# terms

id: PBO:0087214
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-adenosylmethionine synthetase; catalyzes transfer of the adenosyl group of ATP to the sulfur atom of methionine; comparative analysis suggests that a mitochondrially targeted form may result from translation starting at a non-canonical codon upstream of the annotated start codon","termid":"PBO:0087214"}


id: GO:0030950
data:
  {"annotated_genes":["SJAG_00661","SJAG_00424","SJAG_02392","SJAG_00030","SJAG_04461","SJAG_02838","SJAG_00152","SJAG_03748"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73608,88807,89776,96181,99650,100498,105677,111072],"is_not":false,"summary":null,"term":"GO:0030950"}]},"cv_name":"biological_process","definition":"Any cellular process that results in the specification, formation or maintenance of polarized actin-based cytoskeletal structures.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"actin cytoskeleton organization","termid":"GO:0030036"},{"relation_name":"is_a","term_name":"establishment or maintenance of cytoskeleton polarity","termid":"GO:0030952"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00030":null,"SJAG_00152":null,"SJAG_00424":null,"SJAG_00661":null,"SJAG_02392":null,"SJAG_02838":null,"SJAG_03748":null,"SJAG_04461":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007163"},{"rel_name":"is_a","termid":"GO:0030036"},{"rel_name":"is_a","termid":"GO:0007010"}],"interesting_parent_ids":["GO:0007163","GO:0008150","GO:0030036","GO:0007010"],"is_obsolete":false,"name":"establishment or maintenance of actin cytoskeleton polarity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0030950","terms_by_termid":{"GO:0030950":null}}


id: MONDO:0005059
data:
  {"annotated_genes":["SJAG_01349","SJAG_03905","SJAG_01013","SJAG_05979","SJAG_03453","SJAG_01748"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87557,87559,87711,87712,87558,87556],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0018874"}]},"cv_name":"mondo","definition":"A malignant (clonal) hematologic disorder, involving hematopoietic stem cells and characterized by the presence of primitive or atypical myeloid or lymphoid cells in the bone marrow and the blood. Leukemias are classified as acute or chronic based on the degree of cellular differentiation and the predominant cell type present. Leukemia is usually associated with anemia, fever, hemorrhagic episodes, and splenomegaly. Common leukemias include acute myeloid leukemia, chronic myelogenous leukemia, acute lymphoblastic or precursor lymphoblastic leukemia, and chronic lymphocytic leukemia. Treatment is vital to patient survival; untreated, the natural course of acute leukemias is normally measured in weeks or months, while that of chronic leukemias is more often measured in months or years.","definition_xrefs":["NCIT:C3161"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"lymphoid neoplasm","termid":"MONDO:0005157"},{"relation_name":"is_a","term_name":"hematopoietic and lymphoid cell neoplasm","termid":"MONDO:0044881"}],"gene_count":6,"genes_by_uniquename":{"SJAG_01013":null,"SJAG_01349":null,"SJAG_01748":null,"SJAG_03453":null,"SJAG_03905":null,"SJAG_05979":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"leukemia","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["ICD9:208.80","ICDO:9800/3","DOID:1240","ICD9:208.9","MESH:D007938","ICD9:207","ICD9:208.8","ICD9:207.8","ICD9:207.80","EFO:0000565","ICD9:208.90","NANDO:2100002","ICD9:208","MEDGEN:9725","SCTID:93143009","UMLS:C0023418","HP:0001909"],"synonyms":[{"name":"blood (leukemia)","type":"exact"},{"name":"leukaemia (disease)","type":"exact"},{"name":"leukaemia NOS","type":"related"},{"name":"leukemia","type":"exact"},{"name":"leukemia (disease)","type":"exact"},{"name":"leukemia, disease","type":"exact"},{"name":"leukemia, malignant","type":"exact"},{"name":"leukemias","type":"exact"},{"name":"leukemias, general","type":"exact"}],"termid":"MONDO:0005059","terms_by_termid":{"MONDO:0018874":null},"xrefs":{"Monarch":{"xref_id":"0005059"}}}


id: PBO:0090730
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein S12 Mrps12a","termid":"PBO:0090730"}


id: GO:0033938
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of (1->6) linkages between alpha-L-fucose and N-acetyl-D-glucosamine in glycopeptides such as immunoglobulin G glycopeptide and fucosyl-asialo-agalacto-fetuin.","definition_xrefs":["EC:3.2.1.127"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-L-fucosidase activity","termid":"GO:0004560"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016798","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"1,6-alpha-L-fucosidase activity","secondary_identifiers":["MetaCyc:3.2.1.127-RXN"],"synonyms":[{"name":"1,6-L-fucosyl-N-acetyl-D-glucosaminylglycopeptide fucohydrolase activity","type":"related"}],"termid":"GO:0033938"}


id: GO:0044036
data:
  {"annotated_genes":["SJAG_01453","SJAG_03705","SJAG_05285","SJAG_04462","SJAG_04483","SJAG_01264","SJAG_01787","SJAG_00610","SJAG_04771","SJAG_01028","SJAG_03057","SJAG_00816","SJAG_02222","SJAG_01171","SJAG_01255","SJAG_03646","SJAG_04770","SJAG_01017","SJAG_03082","SJAG_02192","SJAG_01276","SJAG_01835","SJAG_04906","SJAG_01288","SJAG_04327","SJAG_01021","SJAG_00598","SJAG_03587","SJAG_04864","SJAG_00876","SJAG_03123","SJAG_04659","SJAG_04668","SJAG_04184","SJAG_00424","SJAG_02278","SJAG_04236","SJAG_02916","SJAG_04666","SJAG_00218","SJAG_00667","SJAG_01290","SJAG_02519","SJAG_05001"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94800],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034413"},{"annotations":[73430],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034412"},{"annotations":[72429,78385,74922,79708,80783,77427,87845,77978,75151],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000032"},{"annotations":[100471,94359],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044347"},{"annotations":[73757,73939,79013,70985,71808],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070600"},{"annotations":[73432,106426,76217,113468,74863,71261,91935,116119],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071970"},{"annotations":[78609,102958],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070880"},{"annotations":[95438,102261,108380,102262],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070879"},{"annotations":[107010,72821],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071966"},{"annotations":[92761,87860],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0140748"},{"annotations":[118334,91109,103161,105667,92745,106239,118207],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0090334"},{"annotations":[89780,103163,95275,92767],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0070610"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving macromolecules forming, or destined to form, part of the cell wall. A cell wall is a rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.","definition_xrefs":["GOC:mah","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"macromolecule metabolic process","termid":"GO:0043170"},{"relation_name":"part_of","term_name":"cell wall organization or biogenesis","termid":"GO:0071554"}],"gene_count":44,"genes_by_uniquename":{"SJAG_00218":null,"SJAG_00424":null,"SJAG_00598":null,"SJAG_00610":null,"SJAG_00667":null,"SJAG_00816":null,"SJAG_00876":null,"SJAG_01017":null,"SJAG_01021":null,"SJAG_01028":null,"SJAG_01171":null,"SJAG_01255":null,"SJAG_01264":null,"SJAG_01276":null,"SJAG_01288":null,"SJAG_01290":null,"SJAG_01453":null,"SJAG_01787":null,"SJAG_01835":null,"SJAG_02192":null,"SJAG_02222":null,"SJAG_02278":null,"SJAG_02519":null,"SJAG_02916":null,"SJAG_03057":null,"SJAG_03082":null,"SJAG_03123":null,"SJAG_03587":null,"SJAG_03646":null,"SJAG_03705":null,"SJAG_04184":null,"SJAG_04236":null,"SJAG_04327":null,"SJAG_04462":null,"SJAG_04483":null,"SJAG_04659":null,"SJAG_04666":null,"SJAG_04668":null,"SJAG_04770":null,"SJAG_04771":null,"SJAG_04864":null,"SJAG_04906":null,"SJAG_05001":null,"SJAG_05285":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0071554"],"is_obsolete":false,"name":"cell wall macromolecule metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0010382"],"synonyms":[{"name":"cellular cell wall macromolecule metabolic process","type":"exact"},{"name":"cellular cell wall macromolecule metabolism","type":"exact"}],"termid":"GO:0044036","terms_by_termid":{"GO:0000032":null,"GO:0034412":null,"GO:0034413":null,"GO:0044347":null,"GO:0070600":null,"GO:0070610":null,"GO:0070879":null,"GO:0070880":null,"GO:0071966":null,"GO:0071970":null,"GO:0090334":null,"GO:0140748":null}}


id: MOD:01829
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to S-carboxymethyl-L-cysteine sulfoxide.","definition_xrefs":["PubMed:18688235","PubMed:17689096"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"S-carboxymethyl-L-cysteine","termid":"MOD:01061"},{"relation_name":"is_a","term_name":"iodoacetic acid derivatized residue","termid":"MOD:00399"},{"relation_name":"is_a","term_name":"sulfur oxygenated L-cysteine","termid":"MOD:00708"},{"relation_name":"is_a","term_name":"sulfur monooxygenated residue","termid":"MOD:01854"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"S-carboxymethyl-L-cysteine sulfoxide","synonyms":[{"name":"CmCO","type":"exact"}],"termid":"MOD:01829"}


id: GO:0010392
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving galactoglucomannan, a polysaccharide composed of D-glucose, D-galactose and D-mannose. The mannose units form the backbone structure (a linear main chain) decorated with a mixture of D-glucose and D-galactose side-units.","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"substituted mannan metabolic process","termid":"GO:0006080"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"galactoglucomannan metabolic process","synonyms":[{"name":"galactoglucomannan metabolism","type":"related"}],"termid":"GO:0010392"}


id: MOD:02055
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that contains an L-serine residue crosslinked to one or more amino acid residues.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-serine residue","termid":"MOD:00916"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"crosslinked L-serine residue","synonyms":[{"name":"XlnkSer","type":"exact"}],"termid":"MOD:02055"}


id: PBO:0059587
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial amidoxime reducing component 2","termid":"PBO:0059587"}


id: GO:0062233
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of F2-isoprostane.","definition_xrefs":["PMID:25449649","PMID:16371369"],"direct_ancestors":[{"relation_name":"is_a","term_name":"icosanoid catabolic process","termid":"GO:1901523"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"F2-isoprostane catabolic process","termid":"GO:0062233"}


id: MONDO:0001415
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Loss of testicular volume.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"testicular disorder","termid":"MONDO:0002329"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"atrophy of testis","secondary_identifiers":["NCIT:C123259","MEDGEN:57626","ICD9:608.3","SCTID:17585008","icd11.foundation:1735709719","DOID:11994","ICD10CM:N50.0","UMLS:C0156312"],"synonyms":[{"name":"testicular atrophy","type":"exact"}],"termid":"MONDO:0001415","xrefs":{"Monarch":{"xref_id":"0001415"}}}


id: PR:Q10078
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A serine/threonine-protein kinase 16 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR22967:SF29","OMA:SCHPO00803"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein kinase ppk13 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3H1.13","secondary_identifiers":["UniProtKB:Q10078"],"synonyms":[{"name":"Spom972h-STK16","type":"exact"}],"termid":"PR:Q10078"}


id: GO:1990030
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Ramification of basket cell axon surrounding cell bodies, forming the characteristic pericellular baskets from which the cell class derives its name.","definition_xrefs":["NIF_Subcellular:sao413722576"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"axon","termid":"GO:0030424"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"pericellular basket","synonyms":[{"name":"peri cellular basket","type":"exact"},{"name":"peri-cellular basket","type":"exact"}],"termid":"GO:1990030"}


id: GO:0031301
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the organelle membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.","definition_xrefs":["GOC:dos","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete integral component of organelle membrane (obsolete GO:0031301)","synonyms":[{"name":"integral to organelle membrane","type":"exact"}],"termid":"GO:0031301"}


id: MONDO:0023541
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Kasznica-Carlson-Coppedge syndrome","secondary_identifiers":["MESH:C537011","UMLS:C2931393","MEDGEN:444045"],"synonyms":[{"name":"Kasznica Carlson Coppedge syndrome","type":"related"},{"name":"ectrodactyly spina bifida cardiopathy","type":"related"},{"name":"ectrodactyly, retrognathism, abnormal ears, highly arched palate, spina bifida, congenital heart defect, single umbilical artery","type":"related"}],"termid":"MONDO:0023541","xrefs":{"Monarch":{"xref_id":"0023541"}}}


id: MONDO:0004247
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A digestive system disease characterized by discontinuation in the inner lining of the gastrointestinal (GI) tract because of gastric acid secretion or pepsin.","direct_ancestors":[{"relation_name":"is_a","term_name":"digestive system disorder","termid":"MONDO:0004335"},{"relation_name":"is_a","term_name":"ulcer disease","termid":"MONDO:0043839"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"peptic ulcer disease","secondary_identifiers":["DOID:750","MEDGEN:45384","ICD9:533","MESH:D010437","NCIT:C3318","SCTID:13200003","UMLS:C0030920"],"synonyms":[{"name":"acute peptic ulcer with haemorrhage","type":"exact"},{"name":"acute peptic ulcer with haemorrhage and perforation","type":"exact"},{"name":"acute peptic ulcer with hemorrhage","type":"exact"},{"name":"acute peptic ulcer with hemorrhage and perforation","type":"exact"},{"name":"acute peptic ulcer without haemorrhage and without perforation","type":"exact"},{"name":"acute peptic ulcer without hemorrhage and without perforation","type":"exact"},{"name":"peptic ulcer","type":"exact"}],"termid":"MONDO:0004247","xrefs":{"Monarch":{"xref_id":"0004247"}}}


id: MONDO:1011704
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hematologic disorder, non-human animal","termid":"MONDO:1011319"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exercise-induced pulmonary hemorrhage, non-human animal","secondary_identifiers":["OMIA:001896"],"termid":"MONDO:1011704","xrefs":{"Monarch":{"xref_id":"1011704"}}}


id: PBO:0069563
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 835, pseudogene","termid":"PBO:0069563"}


id: MONDO:0019324
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pemphigus foliaceous is a rare superficial pemphigus disease characterized by multiple, pruritic, scaly, crusted cutaneous erosions, with flaky circumscribed patches, localized mostly on the face, scalp, trunk and extremities, often presenting an erythematous base. Mucosal involvement is rarely observed.","definition_xrefs":["Orphanet:79481"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pemphigus","termid":"MONDO:0006594"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0005046"],"is_obsolete":false,"name":"pemphigus foliaceus","secondary_identifiers":["MEDGEN:75513","UMLS:C0263313","HGNC:3050","MedDRA:10057069","SCTID:35154004","icd11.foundation:24246260","GARD:7354","EFO:0008601","NANDO:1200230","DOID:0080850"],"synonyms":[{"name":"PF","type":"related"}],"termid":"MONDO:0019324","xrefs":{"Monarch":{"xref_id":"0019324"}}}


id: GO:0002479
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class I protein complex following intracellular transport via a TAP (transporter associated with antigen processing) pathway. The peptide is typically a fragment of a larger exogenous protein which has been degraded within the cell and is dependent on TAP transport from the cytosol to ER for association with the MHC class I molecule. Class I here refers to classical class I molecules.","definition_xrefs":["PMID:15771591","PMID:16181335","PMID:15224093","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antigen processing and presentation of exogenous peptide antigen via MHC class I","termid":"GO:0042590"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent","secondary_identifiers":["Reactome:R-HSA-1236973","Reactome:R-HSA-1236978","Reactome:R-HSA-1236974"],"synonyms":[{"name":"TAP-dependent antigen processing and presentation of exogenous peptide antigen via MHC class I","type":"exact"},{"name":"TAP-dependent exogenous peptide antigen processing and presentation via MHC class I","type":"exact"},{"name":"cross presentation","type":"broad"},{"name":"cross-presentation","type":"broad"},{"name":"exogenous peptide antigen processing and presentation via MHC class I, TAP-dependent","type":"exact"}],"termid":"GO:0002479"}


id: PBO:0087876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcriptional regulator; involved in activation of the GAL genes in response to galactose; forms a complex with Gal80p to relieve Gal80p inhibition of Gal4p; binds galactose and ATP but does not have galactokinase activity; GAL3 has a paralog, GAL1, that arose from the whole genome duplication","termid":"PBO:0087876"}


id: GO:1900417
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A negative regulation of transcription from RNA polymerase II promoter that results in negative regulation of transmembrane transport.","definition_xrefs":["GOC:TermGenie","GOC:mah","PMID:20404084"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of transmembrane transport by negative regulation of transcription from RNA polymerase II promoter (obsolete GO:1900417)","termid":"GO:1900417"}


id: PR:Q9UUJ6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ned1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UUJ6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear elongation and deformation protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1952.13","synonyms":[{"name":"Spom972h-ned1","type":"exact"}],"termid":"PR:Q9UUJ6"}


id: GO:0097488
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding a multivesicular body internal vesicle.","definition_xrefs":["PMID:21183070","GOC:pde"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic vesicle membrane","termid":"GO:0030659"},{"relation_name":"is_a","term_name":"bounding membrane of organelle","termid":"GO:0098588"},{"relation_name":"part_of","term_name":"multivesicular body, internal vesicle","termid":"GO:0097487"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005768"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0031410","GO:0005768","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"multivesicular body, internal vesicle membrane","termid":"GO:0097488"}


id: PR:P48010
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A septin-14 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01283"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin homolog spn5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC24C9.15c","secondary_identifiers":["UniProtKB:P48010"],"synonyms":[{"name":"Spom972h-SEPT14","type":"exact"},{"name":"mei4-dependent protein 9 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"meiotic expression up-regulated protein 28 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P48010"}


id: GO:0034426
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Either of the lipid bilayers that surround a etioplast and form the etioplast envelope.","definition_xrefs":["GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plastid membrane","termid":"GO:0042170"},{"relation_name":"part_of","term_name":"etioplast envelope","termid":"GO:0034425"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"etioplast membrane","termid":"GO:0034426"}


id: MONDO:1012173
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"dysphagia-associated muscular dystrophy, non-human animal","termid":"MONDO:1011790"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dysphagia-associated muscular dystrophy, dog","secondary_identifiers":["OMIA:000681-9615"],"termid":"MONDO:1012173","xrefs":{"Monarch":{"xref_id":"1012173"}}}


id: PATO:0002341
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality of being covered with short, dense, matted hairs.","definition_xrefs":["thefreedictionary:www.thefreedictionary.com"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hairy","termid":"PATO:0000454"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tomentose","termid":"PATO:0002341"}


id: GO:0010349
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-galactose + NAD+ = L-galactono-1,4-lactone + NADH + H+.","definition_xrefs":["RHEA:31559","PMID:12047629"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"L-galactose dehydrogenase activity","secondary_identifiers":["EC:1.1.1.316","MetaCyc:RXN-1884"],"synonyms":[{"name":"L-galactose 1-dehydrogenase activity","type":"related"}],"termid":"GO:0010349"}


id: PBO:0001962
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"target genes transcriptionally co-regulated by Cdk9","termid":"PBO:0001962"}


id: PBO:0069043
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 288, pseudogene","termid":"PBO:0069043"}


id: MONDO:0800291
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"polydactyly-syndactyly-triphalangism","termid":"MONDO:0800066"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"crossed polydactyly, type I","secondary_identifiers":["MEDGEN:357421","UMLS:C1868112","GARD:1616"],"synonyms":[{"name":"CP1","type":"exact"}],"termid":"MONDO:0800291","xrefs":{"Monarch":{"xref_id":"0800291"}}}


id: PBO:0082668
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the cytosolic Fe-S protein assembly (CIA) machinery; contains an Fe-S cluster that receives electrons from NADPH via the action of Tah18p in an early step in the CIA pathway; ortholog of human Ciapin1; protein abundance increases in response to DNA replication stress; inviability of the null mutant is functionally complemented by human CIAPIN1","termid":"PBO:0082668"}


id: GO:1901528
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any hydrogen peroxide mediated signaling pathway that is involved in stomatal movement.","definition_xrefs":["GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete hydrogen peroxide mediated signaling pathway involved in stomatal movement (obsolete GO:1901528)","synonyms":[{"name":"H2O2 mediated signaling pathway involved in stomatal movement","type":"exact"},{"name":"hydrogen peroxide mediated signalling pathway involved in stomatal movement","type":"exact"}],"termid":"GO:1901528"}


id: GO:1990851
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex containing a secreted Wnt protein associated with its receptor, Frizzled (Fz), and co-receptor low density lipoprotein receptor-related protein 5 (LRP5) or LRP6.","definition_xrefs":["PMID:20093360","GOC:PARL","GOC:bf","PMID:11448771"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005886"],"is_obsolete":false,"name":"Wnt-Frizzled-LRP5/6 complex","synonyms":[{"name":"Frizzled-LRP5/6 complex","type":"related"},{"name":"Fz/Wnt/LRP6 complex","type":"narrow"},{"name":"WNT-FZD-LRP5 complex","type":"narrow"},{"name":"WNT-FZD-LRP6 complex","type":"narrow"},{"name":"Wnt receptor complex","type":"broad"},{"name":"Wnt-FZD-LRP5/6 trimeric complex","type":"exact"},{"name":"Wnt-induced Frizzled-LRP5/6 complex","type":"related"},{"name":"Wnt.Fz.LRP ternary complex","type":"exact"}],"termid":"GO:1990851"}


id: MONDO:0002503
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An astrocytic tumor occurring during adulthood. Representative examples include diffuse astrocytoma, anaplastic astrocytoma, and glioblastoma.","definition_xrefs":["NCIT:C7049"],"direct_ancestors":[{"relation_name":"is_a","term_name":"astrocytic tumor","termid":"MONDO:0021636"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adult astrocytic tumor","secondary_identifiers":["DOID:3076","MEDGEN:272290","UMLS:C1332183"],"synonyms":[{"name":"adult astrocytic neoplasm","type":"exact"},{"name":"adult astrocytic tumor","type":"exact"},{"name":"adult astrocytoma","type":"exact"},{"name":"astrocytic tumor","type":"broad"},{"name":"astrocytic tumour","type":"broad"}],"termid":"MONDO:0002503","xrefs":{"Monarch":{"xref_id":"0002503"}}}


id: MONDO:0020830
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"diaphragm disorder","termid":"MONDO:0005728"},{"relation_name":"is_a","term_name":"inflammatory disease","termid":"MONDO:0021166"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diaphragmitis","secondary_identifiers":["MEDGEN:507638","SCTID:73160007","UMLS:C0011985","icd11.foundation:1124735890"],"synonyms":[{"name":"diaphragmatitis","type":"exact"},{"name":"diaphragmitis","type":"exact"}],"termid":"MONDO:0020830","xrefs":{"Monarch":{"xref_id":"0020830"}}}


id: PBO:0073204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"semaphorin 3D","termid":"PBO:0073204"}


id: PBO:0076003
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STIM1 antisense RNA 1","termid":"PBO:0076003"}


id: GO:0004612
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + oxaloacetate = ADP + CO2 + H+ + phosphoenolpyruvate.","definition_xrefs":["RHEA:18617","EC:4.1.1.49"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphoenolpyruvate carboxykinase activity","termid":"GO:0004611"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"phosphoenolpyruvate carboxykinase (ATP) activity","secondary_identifiers":["KEGG_REACTION:R00341","MetaCyc:PEPCARBOXYKIN-RXN"],"synonyms":[{"name":"ATP:oxaloacetate carboxy-lyase (transphosphorylating)","type":"related"},{"name":"ATP:oxaloacetate carboxy-lyase (transphosphorylating; phosphoenolpyruvate-forming)","type":"related"},{"name":"PEPCK (ATP)","type":"related"},{"name":"PEPK","type":"related"},{"name":"phosphoenolpyruvate carboxylase (ATP)","type":"related"},{"name":"phosphoenolpyruvic carboxykinase","type":"broad"},{"name":"phosphopyruvate carboxykinase","type":"broad"},{"name":"phosphopyruvate carboxykinase (adenosine triphosphate)","type":"related"},{"name":"phosphopyruvate carboxylase (ATP)","type":"related"}],"termid":"GO:0004612"}


id: MONDO:0012465
data:
  {"annotated_genes":["SJAG_03115"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85564],"is_not":false,"summary":null,"term":"MONDO:0012465"}]},"cv_name":"mondo","definition":"The combination of a propensity for venous thrombosis and seizures has been reported in two unrelated kindreds. Transmission is autosomal recessive. It results from a point mutation of PIGM, which reduces transcription of PIGM and blocks mannosylation of glycosylphosphatidylinositol (GPI), leading to partial but severe deficiency of GPI.","definition_xrefs":["Orphanet:83639"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital hematological disorder","termid":"MONDO:0009332"},{"relation_name":"is_a","term_name":"inborn disorder of glycosphingolipid and glycosylphosphatidylinositol anchor glycosylation","termid":"MONDO:0017748"},{"relation_name":"is_a","term_name":"inherited blood coagulation disorder","termid":"MONDO:0021181"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03115":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0024322"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002525"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005066","MONDO:0002525","MONDO:0024322"],"is_obsolete":false,"name":"hypercoagulability syndrome due to glycosylphosphatidylinositol deficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:610293","SCTID:724344004","UMLS:C5201145","MEDGEN:1684821","NANDO:1200983","GARD:9965","icd11.foundation:1811042875"],"synonyms":[{"name":"GPI deficiency","type":"related"},{"name":"GPID","type":"related"},{"name":"PIGM-CDG","type":"exact"},{"name":"congenital disorder of glycosylation due to PIGM deficiency","type":"related"},{"name":"glycosylphosphatidylinositol biosynthesis defect 1","type":"related"},{"name":"glycosylphosphatidylinositol deficiency","type":"related"}],"termid":"MONDO:0012465","terms_by_termid":{"MONDO:0012465":null},"xrefs":{"Monarch":{"xref_id":"0012465"}}}


id: FYPO:0007275
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which mitochondrion inheritance is abnormal during the meiotic cell cycle. Mitochondrion inheritance is a cellular process that results in the distribution of mitochondria into daughter cells after mitosis or meiosis, mediated by interactions between mitochondria and the cytoskeleton.","definition_xrefs":["PomBase:mah","GO:0000001"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular process during meiotic cell cycle","termid":"FYPO:0007260"},{"relation_name":"is_a","term_name":"abnormal mitochondrion inheritance","termid":"FYPO:0007274"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000138","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abnormal mitochondrion inheritance during meiotic cell cycle","synonyms":[{"name":"abnormal mitochondrial inheritance during meiotic cell cycle","type":"exact"},{"name":"abnormal mitochondrion inheritance during meiosis","type":"related"}],"termid":"FYPO:0007275"}


id: GO:0032529
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a microvillus on a follicle cell. A microvillus is a thin cylindrical membrane-covered projection on the surface of an animal cell containing a core bundle of actin filaments.","definition_xrefs":["GOC:sart","PMID:16507588"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microvillus organization","termid":"GO:0032528"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"follicle cell microvillus organization","synonyms":[{"name":"follicle cell microvillus organisation","type":"exact"},{"name":"follicle cell microvillus organization and biogenesis","type":"related"}],"termid":"GO:0032529"}


id: SO:1000032
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence alteration which included an insertion and a deletion, affecting 2 or more bases.","direct_ancestors":[{"relation_name":"is_a","term_name":"sequence_alteration","termid":"SO:0001059"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"delins","secondary_identifiers":["loinc:LA9659-9","http://en.wikipedia.org/wiki/Indel"],"synonyms":[{"name":"deletion-insertion","type":"exact"},{"name":"indel","type":"exact"}],"termid":"SO:1000032"}


id: PBO:0028692
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_doxorubicin","termid":"PBO:0028692"}


id: PBO:0075472
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spermatogenesis associated 22","termid":"PBO:0075472"}


id: GO:0070123
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with transforming growth factor beta to initiate a change in cell activity; facilitates ligand binding to type I and type II TGF-beta receptors.","definition_xrefs":["GOC:mah","PMID:9759503","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transforming growth factor beta receptor activity","termid":"GO:0005024"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016301","GO:0003674","GO:0016740","GO:0140096","GO:0003824","GO:0004672","GO:0038023"],"is_obsolete":false,"name":"transforming growth factor beta receptor activity, type III","synonyms":[{"name":"betaglycan","type":"narrow"},{"name":"endoglin","type":"narrow"},{"name":"transforming growth factor beta ligand binding to type III receptor","type":"related"},{"name":"type III TGF-beta receptor activity","type":"exact"},{"name":"type III TGFbeta receptor activity","type":"exact"},{"name":"type III transforming growth factor beta receptor activity","type":"exact"}],"termid":"GO:0070123"}


id: GO:0002124
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Aggressive behavior performed in defence of a fixed area against intruders, typically conspecifics.","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aggressive behavior","termid":"GO:0002118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"territorial aggressive behavior","synonyms":[{"name":"territorial aggression","type":"exact"}],"termid":"GO:0002124"}


id: FYPO:0000374
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of RNA modification is increased. All RNA modification may be increased, or one or more specific RNA modifications may be selectively affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal RNA modification","termid":"FYPO:0000370"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000294","FYPO:0005447","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"increased RNA modification","synonyms":[{"name":"RNA modification: increased","type":"related"},{"name":"increased RNA modification during mitotic cell cycle","type":"related"},{"name":"increased RNA modification during vegetative growth","type":"exact"}],"termid":"FYPO:0000374"}


id: PBO:0086476
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative mitochondrial protein of unknown function; null mutant is viable","termid":"PBO:0086476"}


id: PBO:0109367
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed transcript, Y-linked 4","termid":"PBO:0109367"}


id: MONDO:0016034
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete cleft lip with or without cleft palate (obsolete MONDO:0016034)","secondary_identifiers":["Orphanet:1991"],"synonyms":[{"name":"Tessier cleft number 1,2","type":"exact"}],"termid":"MONDO:0016034","xrefs":{"Monarch":{"xref_id":"0016034"}}}


id: GO:0031597
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A proteasome complex found in the cytosol of a cell.","definition_xrefs":["GOC:mtg_sensu","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proteasome complex","termid":"GO:0000502"},{"relation_name":"part_of","term_name":"cytosol","termid":"GO:0005829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005829"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0032991","GO:0005829","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"cytosolic proteasome complex","termid":"GO:0031597"}


id: MONDO:0005282
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An autoimmune disorder that manifests as different lupus-specific skin disorders; it can occur with systemic lupus erythematosus, or as a singular disease.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lupus erythematosus","termid":"MONDO:0004670"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"cutaneous lupus erythematosus","secondary_identifiers":["MESH:D008178","DOID:0050169","UMLS:C0024137","icd11.foundation:1401395930","GARD:6225","EFO:0003834","MEDGEN:7401","NCIT:C26819","SCTID:7119001"],"synonyms":[{"name":"lupus erythematosus, cutaneous","type":"related"}],"termid":"MONDO:0005282","xrefs":{"Monarch":{"xref_id":"0005282"}}}


id: GO:0047960
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: glycine + H2O + NAD+ = glyoxylate + NH3 + NADH.","definition_xrefs":["EC:1.4.1.10","MetaCyc:GLYCINE-DEHYDROGENASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor","termid":"GO:0016639"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"glycine dehydrogenase activity","secondary_identifiers":["RHEA:15721"],"synonyms":[{"name":"glycine:NAD+ oxidoreductase (deaminating)","type":"related"}],"termid":"GO:0047960"}


id: PBO:0028347
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_CENP-A_containing_chromatin","termid":"PBO:0028347"}


id: GO:0061208
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the cells of the mesonephros as it progresses from its formation to the mature state.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation involved in kidney development","termid":"GO:0061005"},{"relation_name":"part_of","term_name":"mesonephros development","termid":"GO:0001823"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell differentiation involved in mesonephros development","termid":"GO:0061208"}


id: GO:0050958
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events required for an organism to receive a stimulus relating to a magnetic field, convert it to a molecular signal, and recognize and characterize the signal. Stimuli may be chemical, mechanical or electrical and interpreting these stimuli allows an organism to determine the orientation of a magnetic field. Magnetoreception also involves the perception of light; birds cannot orient without the presence of short wavelength (blue/green) light.","definition_xrefs":["PMID:15886990","Wikipedia:Magnetoception","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensory perception","termid":"GO:0007600"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"magnetoreception","synonyms":[{"name":"magnetoception","type":"exact"},{"name":"sensory perception of magnetic field","type":"exact"}],"termid":"GO:0050958"}


id: PR:Q9HDY3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAPB1A10.07c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9HDY3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane protein PB1A10.07c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAPB1A10.07c","synonyms":[{"name":"Spom972h-SPAPB1A10.07c","type":"exact"}],"termid":"PR:Q9HDY3"}


id: PBO:0049758
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HCFC1 antisense RNA 1","termid":"PBO:0049758"}


id: MONDO:0017507
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Congenital absence/hypoplasia of thumb, bilateral is a rare developmental defect during embryogenesis characterized by bilateral underdevelopment of the thumbs, ranging from a slight decrease in thumb size to complete absence of the thumbs. This anomaly counts for 20-60% of thumb hypoplasias.","definition_xrefs":["Orphanet:295112"],"gene_count":0,"genotype_count":0,"name":"obsolete congenital absence/hypoplasia of thumb, bilateral (obsolete MONDO:0017507)","synonyms":[{"name":"thumb hypodactyly, bilateral","type":"exact"},{"name":"thumb oligodactyly, bilateral","type":"exact"}],"termid":"MONDO:0017507","xrefs":{"Monarch":{"xref_id":"0017507"}}}


id: PBO:0055172
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2596","termid":"PBO:0055172"}


id: PBO:0032769
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme E2, Ubc11/UbcP4","termid":"PBO:0032769"}


id: PBO:0060253
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MYCL pseudogene 3","termid":"PBO:0060253"}


id: PR:O59701
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cys11 gene.","definition_xrefs":["UniProtKB:O59701","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cysteine synthase 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC36.04","synonyms":[{"name":"CSase 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"O-acetylserine (thiol)-lyase 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"O-acetylserine sulfhydrylase 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"OAS-TL 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-cys11","type":"exact"}],"termid":"PR:O59701"}


id: MONDO:0018053
data:
  {"annotated_genes":["SJAG_00159","SJAG_03112","SJAG_00995","SJAG_01235","SJAG_03206","SJAG_01797","SJAG_01207","SJAG_01159"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87366],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011125"},{"annotations":[85647],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014615"},{"annotations":[85648],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014619"},{"annotations":[85661],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010495"},{"annotations":[85979],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014841"},{"annotations":[87329],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032806"},{"annotations":[86452],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030517"},{"annotations":[86457],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030518"}]},"cv_name":"mondo","definition":"Trichothiodystrophy or TTD is a heterogeneous group disorders characterized by short, brittle hair with low-sulphur content (due to an abnormal synthesis of the sulfur containing keratins).","definition_xrefs":["Orphanet:33364"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ectodermal dysplasia syndrome","termid":"MONDO:0019287"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00159":null,"SJAG_00995":null,"SJAG_01159":null,"SJAG_01207":null,"SJAG_01235":null,"SJAG_01797":null,"SJAG_03112":null,"SJAG_03206":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"trichothiodystrophy","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MedDRA:10044628","OMIMPS:601675","MEDGEN:363064","UMLS:C1955934","NORD:1292","SCTID:723551003","NANDO:1200627","GARD:12109","DOID:0111866","NCIT:C4924","icd11.foundation:1366758649"],"synonyms":[{"name":"trichothiodystrophy syndrome","type":"exact"}],"termid":"MONDO:0018053","terms_by_termid":{"MONDO:0010495":null,"MONDO:0011125":null,"MONDO:0014615":null,"MONDO:0014619":null,"MONDO:0014841":null,"MONDO:0030517":null,"MONDO:0030518":null,"MONDO:0032806":null},"xrefs":{"Monarch":{"xref_id":"0018053"}}}


id: PBO:0036222
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_replication_fork_pausing_at_rDNA","termid":"PBO:0036222"}


id: MONDO:0014158
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any nephronophthisis in which the cause of the disease is a mutation in the ANKS6 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephronophthisis","termid":"MONDO:0019005"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0005240","MONDO:0006025"],"is_obsolete":false,"name":"nephronophthisis 16","secondary_identifiers":["DOID:0111124","GARD:18183","OMIM:615382","MEDGEN:815650","SCTID:444558002","UMLS:C3809320"],"synonyms":[{"name":"ANKS6 nephronophthisis (disease)","type":"exact"},{"name":"NPHP16","type":"exact"},{"name":"autosomal recessive infantile NPHP","type":"related"},{"name":"autosomal recessive infantile nephronophthisis","type":"related"},{"name":"infantile nephronophthisis","type":"related"},{"name":"nephronophthisis (disease) caused by mutation in ANKS6","type":"exact"},{"name":"nephronophthisis 16","type":"exact"},{"name":"nephronophthisis type 16","type":"exact"}],"termid":"MONDO:0014158","xrefs":{"Monarch":{"xref_id":"0014158"}}}


id: PBO:0067631
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 803, pseudogene","termid":"PBO:0067631"}


id: PBO:0091641
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription factor Grt1","termid":"PBO:0091641"}


id: PR:O74551
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC777.12c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74551"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C777.12c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC777.12c","synonyms":[{"name":"Spom972h-SPCC777.12c","type":"exact"}],"termid":"PR:O74551"}


id: PR:O74890
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A tyrosine--tRNA ligase, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11766:SF0","PRO:DNx","OMA:SCHPO04935"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tyrosine--tRNA ligase, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC576.06c","secondary_identifiers":["UniProtKB:O74890"],"synonyms":[{"name":"Spom972h-YARS2","type":"exact"},{"name":"TyrRS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"tyrosyl-tRNA synthetase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74890"}


id: GO:0002191
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process where the cap structure, composed of a 7- methylguanosine (m7G) group and associated cap-binding proteins, located at the 5' end of an mRNA molecule, which serves as a molecular tag that marks the spot where the 40S ribosomal subunit, is recruited and will then scan in a 5' to 3' direction until an AUG codon is encountered in an appropriate sequence context to initiate mRNA translation.","definition_xrefs":["PMID:17284590","PMID:19604130"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic translational initiation","termid":"GO:0002183"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0002181"}],"interesting_parent_ids":["GO:0002181","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"cap-dependent translational initiation","termid":"GO:0002191"}


id: MONDO:0700248
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant epidermolytic ichthyosis","termid":"MONDO:0020702"},{"relation_name":"is_a","term_name":"epidermolytic hyperkeratosis 2","termid":"MONDO:0958184"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0005093"],"is_obsolete":false,"name":"epidermolytic hyperkeratosis 2A, autosomal dominant","secondary_identifiers":["UMLS:C5882671","MEDGEN:1846123","OMIM:620150"],"termid":"MONDO:0700248","xrefs":{"Monarch":{"xref_id":"0700248"}}}


id: PATO:0000164
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000164 relative temporal (obsolete PATO:0000164)","termid":"PATO:0000164"}


id: MONDO:0002299
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A morphologic variant of the glomus tumor characterized by the presence of dilated veins, surrounded by small clusters of glomus cells. Glomangiomas are most often present in patients with multiple lesions.","definition_xrefs":["NCIT:C4222"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glomus tumor","termid":"MONDO:0018327"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glomangioma","secondary_identifiers":["ICDO:8712/0","DOID:2436","MEDGEN:87239","UMLS:C0334421"],"synonyms":[{"name":"glomangioma","type":"exact"}],"termid":"MONDO:0002299","xrefs":{"Monarch":{"xref_id":"0002299"}}}


id: PBO:0086711
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; mutant exhibits mitophagy defects; in closely related species and other S. cerevisiae strain backgrounds YIL165C and adjacent ORF, YIL164C, likely constitute a single ORF encoding a nitrilase gene","termid":"PBO:0086711"}


id: PBO:0046776
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exostosin like glycosyltransferase 2","termid":"PBO:0046776"}


id: PBO:0043646
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COP9 signalosome subunit 6","termid":"PBO:0043646"}


id: GO:0180021
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + U6 snRNA = S-adenosyl-L-homocysteine + U6 containing a 3'-terminal 2'-O-methylnucleotide + H+.","definition_xrefs":["RHEA:63088","PMID:37403782"],"direct_ancestors":[{"relation_name":"is_a","term_name":"small RNA 2'-O-methyltransferase activity","termid":"GO:0090486"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0016741","GO:0003824","GO:0003674","GO:0140098","GO:0016740"],"is_obsolete":false,"name":"U6 snRNA 2'-O-ribose methyltransferase activity","termid":"GO:0180021"}


id: PBO:0117128
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SOX7 antisense RNA 1","termid":"PBO:0117128"}


id: GO:0035859
data:
  {"annotated_genes":["SJAG_00561","SJAG_02765","SJAG_04496","SJAG_03907","SJAG_01184","SJAG_02424","SJAG_00824","SJAG_00209"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[80291,88358,73935,73956],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1990130"},{"annotations":[75787,88359,89754,88649,106885],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0061700"}]},"cv_name":"cellular_component","definition":"A GTPase-activating protein (GAP) complex that regulates TORC1 signaling by interacting with the Rag GTPase. In S. cerevisiae the complex contains Seh1p, Sec13p, Npr2p, Npr3p, Iml1p, Mtc5p, Rtc1p, and Sea4p.","definition_xrefs":["PMID:23974112","GOC:jh","PMID:21454883"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00209":null,"SJAG_00561":null,"SJAG_00824":null,"SJAG_01184":null,"SJAG_02424":null,"SJAG_02765":null,"SJAG_03907":null,"SJAG_04496":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"Seh1-associated complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"GATOR complex","type":"exact"},{"name":"SEA complex","type":"exact"}],"termid":"GO:0035859","terms_by_termid":{"GO:0061700":null,"GO:1990130":null}}


id: PBO:0029856
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H3_acetylation_at_centromere_outer_repeat","termid":"PBO:0029856"}


id: PBO:0051503
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IK cytokine","termid":"PBO:0051503"}


id: PBO:0054921
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2335","termid":"PBO:0054921"}


id: GO:0047875
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: Ecdysone + O2 = 3-dehydroecdysone + H2O2.","definition_xrefs":["EC:1.1.3.16","RHEA:11796"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor","termid":"GO:0016899"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"ecdysone oxidase activity","secondary_identifiers":["KEGG_REACTION:R02373","MetaCyc:ECDYSONE-OXIDASE-RXN"],"synonyms":[{"name":"beta-ecdysone oxidase activity","type":"related"},{"name":"ecdysone:oxygen 3-oxidoreductase activity","type":"related"}],"termid":"GO:0047875"}


id: PBO:0000960
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Fission yeast Fun Thirty","termid":"PBO:0000960"}


id: PBO:0079459
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trans-golgi network vesicle protein 23 homolog A","termid":"PBO:0079459"}


id: PBO:0066120
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ras association domain family member 1","termid":"PBO:0066120"}


id: MOD:00204
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-leucine residue to D-leucine.","definition_xrefs":["RESID:AA0197","PubMed:1548227","PubMed:10461743","ChEBI:30005","PubMed:1358533","PubMed:12135762"],"direct_ancestors":[{"relation_name":"is_a","term_name":"residues isobaric at 113.084064 Da","termid":"MOD:00306"},{"relation_name":"is_a","term_name":"stereoisomerized residue","termid":"MOD:00664"},{"relation_name":"is_a","term_name":"modified L-leucine residue","termid":"MOD:00911"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"D-leucine","synonyms":[{"name":"(2R)-2-amino-4-methylpentanoic acid","type":"exact"},{"name":"D-Leu","type":"exact"},{"name":"D-leucine","type":"exact"},{"name":"MOD_RES D-leucine","type":"exact"},{"name":"alpha-aminoisocaproic acid","type":"exact"}],"termid":"MOD:00204"}


id: GO:0004659
data:
  {"annotated_genes":["SJAG_02163","SJAG_04434","SJAG_02719","SJAG_03810","SJAG_00580","SJAG_04923","SJAG_03352","SJAG_04568","SJAG_00554","SJAG_01865","SJAG_06603","SJAG_03173","SJAG_02583","SJAG_03029"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[67924,58204],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004337"},{"annotations":[77647],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008412"},{"annotations":[119535,119534],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097269"},{"annotations":[74303,71653],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004662"},{"annotations":[74825,72311],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045547"},{"annotations":[109795,99924],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004311"},{"annotations":[71652,73919],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004660"},{"annotations":[78713],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008495"},{"annotations":[101725,74206,79177],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004663"},{"annotations":[76620],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051996"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of a prenyl group from one compound (donor) to another (acceptor).","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity, transferring alkyl or aryl (other than methyl) groups","termid":"GO:0016765"}],"gene_count":14,"genes_by_uniquename":{"SJAG_00554":null,"SJAG_00580":null,"SJAG_01865":null,"SJAG_02163":null,"SJAG_02583":null,"SJAG_02719":null,"SJAG_03029":null,"SJAG_03173":null,"SJAG_03352":null,"SJAG_03810":null,"SJAG_04434":null,"SJAG_04568":null,"SJAG_04923":null,"SJAG_06603":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016765"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016765","GO:0003674","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"prenyltransferase activity","references_by_uniquename":{"GO_REF:0000003":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:29191091":null},"secondary_identifiers":["Reactome:R-HSA-6806674"],"termid":"GO:0004659","terms_by_termid":{"GO:0004311":null,"GO:0004337":null,"GO:0004660":null,"GO:0004662":null,"GO:0004663":null,"GO:0006743":null,"GO:0006744":null,"GO:0008412":null,"GO:0008495":null,"GO:0045547":null,"GO:0051996":null,"GO:0097269":null}}


id: PBO:0060204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mucin like 3","termid":"PBO:0060204"}


id: PBO:0050721
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family D (Hsp60) member 1 pseudogene 7","termid":"PBO:0050721"}


id: FYPO:0003917
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the degradation of messenger RNA (mRNA) molecules that contain nonsense mutations is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA catabolic process during vegetative growth","termid":"FYPO:0002137"},{"relation_name":"is_a","term_name":"abnormal nonsense-mediated decay","termid":"FYPO:0003916"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0000294","FYPO:0005447","FYPO:0006551"],"is_obsolete":false,"name":"decreased nonsense-mediated decay","synonyms":[{"name":"decreased NMD","type":"exact"},{"name":"decreased nonsense-mediated decay during mitotic cell cycle","type":"related"},{"name":"decreased nonsense-mediated decay during vegetative growth","type":"exact"},{"name":"decreased nuclear-transcribed mRNA catabolic process, nonsense-mediated decay","type":"exact"},{"name":"reduced nonsense-mediated decay","type":"exact"}],"termid":"FYPO:0003917"}


id: PBO:0004894
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial conserved protein (predicted)","termid":"PBO:0004894"}


id: PBO:0014300
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S. pombe specific protein","termid":"PBO:0014300"}


id: GO:0180036
data:
  {"annotated_genes":["SJAG_02622"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[118411],"is_not":false,"summary":null,"term":"GO:0180036"}]},"cv_name":"biological_process","definition":"A process that identifies and degrades defective or aberrant lncRNAs within the nucleus.","definition_xrefs":["GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear RNA surveillance","termid":"GO:0071027"},{"relation_name":"is_a","term_name":"lncRNA catabolic process","termid":"GO:0110064"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02622":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"nuclear lncRNA surveillance","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0180036","terms_by_termid":{"GO:0180036":null}}


id: MONDO:0014423
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Severe combined immunodeficiency (SCID) due to DNA-PKcs deficiency is an extremely rare type of SCID characterized by the classical signs of SCID (severe and recurrent infections, diarrhea, failure to thrive), absence of T and B lymphocytes, and cell sensitivity to ionizing radiation.","definition_xrefs":["Orphanet:317425"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T-B- severe combined immunodeficiency","termid":"MONDO:0017855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"severe combined immunodeficiency due to DNA-PKcs deficiency","secondary_identifiers":["UMLS:C4014833","DOID:0111961","GARD:17441","MEDGEN:863270","SCTID:716871006","OMIM:615966"],"synonyms":[{"name":"IMD26","type":"related"},{"name":"SCID due to DNA-PKcs deficiency","type":"exact"},{"name":"immunodeficiency 26 with or without neurologic abnormalities","type":"related"},{"name":"immunodeficiency 26, with or without neurologic abnormalities","type":"exact"}],"termid":"MONDO:0014423","xrefs":{"Monarch":{"xref_id":"0014423"}}}


id: GO:0035121
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which the anatomical structures of the tail are generated and organized. The tail is the hindmost part of some animals.","definition_xrefs":["ISBN:0198612001"],"gene_count":0,"genotype_count":0,"name":"obsolete tail morphogenesis (obsolete GO:0035121)","synonyms":[{"name":"tail morphogenesis","type":"exact"}],"termid":"GO:0035121"}


id: MONDO:0014087
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Smith-McCort dysplasia in which the cause of the disease is a mutation in the RAB33B gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Smith-McCort dysplasia","termid":"MONDO:0015799"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"Smith-McCort dysplasia 2","secondary_identifiers":["UMLS:C3714896","DOID:0081271","GARD:15921","OMIM:615222","MEDGEN:811489"],"synonyms":[{"name":"RAB33B Smith-McCort dysplasia","type":"exact"},{"name":"SMITH-McCort dysplasia 2","type":"related"},{"name":"Smc2","type":"related"},{"name":"Smith-McCort dysplasia 2","type":"exact"},{"name":"Smith-McCort dysplasia caused by mutation in RAB33B","type":"exact"},{"name":"Smith-McCort dysplasia type 2","type":"exact"}],"termid":"MONDO:0014087","xrefs":{"Monarch":{"xref_id":"0014087"}}}


id: PBO:0057505
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 623","termid":"PBO:0057505"}


id: PBO:0070802
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L12 pseudogene 32","termid":"PBO:0070802"}


id: PBO:0048136
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FMR1 autosomal homolog 2","termid":"PBO:0048136"}


id: GO:0030328
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of prenylcysteine, 3-methyl-2-buten-1-yl-cysteine, a derivative of the amino acid cysteine formed by the covalent addition of a prenyl residue.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"prenylcysteine metabolic process","termid":"GO:0030329"},{"relation_name":"is_a","term_name":"modified amino acid catabolic process","termid":"GO:0042219"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"prenylcysteine catabolic process","synonyms":[{"name":"prenylcysteine breakdown","type":"exact"},{"name":"prenylcysteine catabolism","type":"exact"},{"name":"prenylcysteine degradation","type":"exact"}],"termid":"GO:0030328"}


id: GO:0047571
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a 3-oxosteroid + acceptor = a 3-oxo-D1-steroid + reduced acceptor.","definition_xrefs":["MetaCyc:3-OXOSTEROID-1-DEHYDROGENASE-RXN","EC:1.3.99.4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid dehydrogenase activity, acting on the CH-CH group of donors","termid":"GO:0033765"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"3-oxosteroid 1-dehydrogenase activity","secondary_identifiers":["RHEA:13329"],"synonyms":[{"name":"1-ene-dehydrogenase activity","type":"related"},{"name":"3-ketosteroid-1-en-dehydrogenase activity","type":"related"},{"name":"3-ketosteroid-delta1-dehydrogenase activity","type":"related"},{"name":"3-oxosteroid delta1-dehydrogenase activity","type":"related"},{"name":"3-oxosteroid:(2,6-dichlorphenolindophenol) delta1-oxidoreductase activity","type":"related"},{"name":"3-oxosteroid:(acceptor) delta1-oxidoreductase activity","type":"related"},{"name":"3-oxosteroid:acceptor delta1-oxidoreductase activity","type":"related"},{"name":"4-en-3-oxosteroid:(acceptor)-1-en-oxido-reductase activity","type":"related"},{"name":"delta1-dehydrogenase activity","type":"related"},{"name":"delta1-steroid reductase activity","type":"related"}],"termid":"GO:0047571"}


id: PR:O74968
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- usp102 gene.","definition_xrefs":["UniProtKB:O74968","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U1 small nuclear ribonucleoprotein usp102 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC4B4.07c","synonyms":[{"name":"Spom972h-usp102","type":"exact"},{"name":"U1 snRNP protein usp102 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74968"}


id: GO:1904120
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of otic vesicle morphogenesis.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:25677106"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of animal organ morphogenesis","termid":"GO:0110110"},{"relation_name":"is_a","term_name":"regulation of otic vesicle morphogenesis","termid":"GO:1904118"},{"relation_name":"is_a","term_name":"positive regulation of morphogenesis of an epithelium","termid":"GO:1905332"},{"relation_name":"positively_regulates","term_name":"otic vesicle morphogenesis","termid":"GO:0071600"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of otic vesicle morphogenesis","synonyms":[{"name":"activation of otic vesicle morphogenesis","type":"narrow"},{"name":"up regulation of otic vesicle morphogenesis","type":"exact"},{"name":"up-regulation of otic vesicle morphogenesis","type":"exact"},{"name":"upregulation of otic vesicle morphogenesis","type":"exact"}],"termid":"GO:1904120"}


id: GO:0043962
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of adenylate cyclase-mediated signal transduction in the symbiont organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation by host of symbiont adenylate cyclase-mediated signal transduction (obsolete GO:0043962)","termid":"GO:0043962"}


id: PBO:0056021
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich single-pass membrane protein 2","termid":"PBO:0056021"}


id: GO:0031237
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of a plasma membrane consisting of gene products and protein complexes that penetrate the periplasmic side of the plasma membrane only, either directly or via some covalently attached hydrophobic anchor.","definition_xrefs":["GOC:mah","GOC:mtg_sensu"],"gene_count":0,"genotype_count":0,"name":"obsolete intrinsic component of periplasmic side of plasma membrane (obsolete GO:0031237)","synonyms":[{"name":"intrinsic to external leaflet of plasma membrane, in periplasmic space","type":"exact"},{"name":"intrinsic to periplasmic side of plasma membrane","type":"exact"}],"termid":"GO:0031237"}


id: MONDO:0008770
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"amelogenesis imperfecta type 1","termid":"MONDO:0015047"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amelogenesis imperfecta type 1C","secondary_identifiers":["GARD:15136","OMIM:204650","MESH:C567147","DOID:0110056","MEDGEN:388763","UMLS:C2673923"],"synonyms":[{"name":"AI1C","type":"exact"},{"name":"amelogenesis imperfecta type IC","type":"exact"},{"name":"amelogenesis imperfecta, hypoplastic, with or without Openbite malocclusion, autosomal recessive","type":"related"},{"name":"amelogenesis imperfecta, local hypoplastic type, autosomal recessive","type":"related"},{"name":"amelogenesis imperfecta, type 1C","type":"exact"},{"name":"amelogenesis imperfecta, type IC","type":"related"},{"name":"autosomal recessive amelogenesis imperfecta hypoplastic with or without openbite malocclusion","type":"exact"},{"name":"autosomal recessive amelogenesis imperfecta local hypoplastic type","type":"exact"}],"termid":"MONDO:0008770","xrefs":{"Monarch":{"xref_id":"0008770"}}}


id: GO:0090612
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: cyclic adenosine monophosphate + H2O = cyclic inosine monophosphate + NH3.","definition_xrefs":["RHEA:22908","PMID:24074367"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines","termid":"GO:0016814"},{"relation_name":"is_a","term_name":"deaminase activity","termid":"GO:0019239"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016810"}],"interesting_parent_ids":["GO:0016810","GO:0003824","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"cAMP deaminase activity","secondary_identifiers":["EC:3.5.4.46"],"synonyms":[{"name":"cyclic adenosine monophosphate deaminase activity","type":"exact"}],"termid":"GO:0090612"}


id: MONDO:0006426
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A central nervous system embryonal tumor, not otherwise specified arising from the spinal cord.","definition_xrefs":["NCIT:C5406"],"direct_ancestors":[{"relation_name":"is_a","term_name":"central nervous system primitive neuroectodermal neoplasm","termid":"MONDO:0000640"},{"relation_name":"is_a","term_name":"spinal cord cancer","termid":"MONDO:0003544"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"spinal cord primitive neuroectodermal tumor","secondary_identifiers":["EFO:1000545","MEDGEN:234805","DOID:6872","UMLS:C1336048"],"synonyms":[{"name":"primitive neuroectodermal neoplasm of spinal cord","type":"exact"},{"name":"primitive neuroectodermal neoplasm of the spinal cord","type":"exact"},{"name":"primitive neuroectodermal tumor of spinal cord","type":"exact"},{"name":"primitive neuroectodermal tumor of the spinal cord","type":"exact"},{"name":"primitive neuroectodermal tumour of spinal cord","type":"exact"},{"name":"primitive neuroectodermal tumour of the spinal cord","type":"exact"},{"name":"spinal cord PNET","type":"exact"},{"name":"spinal cord primitive neuroectodermal neoplasm","type":"exact"},{"name":"spinal cord primitive neuroectodermal tumor","type":"exact"}],"termid":"MONDO:0006426","xrefs":{"Monarch":{"xref_id":"0006426"}}}


id: SO:1001270
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1001270 stop_codon_redefinition_as_pyrrolysine (obsolete SO:1001270)","termid":"SO:1001270"}


id: MONDO:0975837
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neurodegeneration, infantile-onset, with optic atrophy and brain abnormalities","secondary_identifiers":["OMIM:620987"],"termid":"MONDO:0975837","xrefs":{"Monarch":{"xref_id":"0975837"}}}


id: PBO:0091463
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ell Binding Protein","termid":"PBO:0091463"}


id: PBO:0116616
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3142","termid":"PBO:0116616"}


id: MONDO:0018503
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"gastric carcinoma","termid":"MONDO:0004950"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0004335"],"is_obsolete":false,"name":"carcinoma of stomach, salivary gland type","secondary_identifiers":["Orphanet:423781"],"synonyms":[{"name":"gastric carcinoma, salivary gland type","type":"exact"}],"termid":"MONDO:0018503","xrefs":{"Monarch":{"xref_id":"0018503"}}}


id: GO:1901639
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of XDP.","definition_xrefs":["GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete XDP catabolic process (obsolete GO:1901639)","synonyms":[{"name":"XDP breakdown","type":"exact"},{"name":"XDP catabolism","type":"exact"},{"name":"XDP degradation","type":"exact"}],"termid":"GO:1901639"}


id: GO:0009139
data:
  {"annotated_genes":["SJAG_02874","SJAG_04665","SJAG_04657","SJAG_00779","SJAG_00885"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[80762],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046705"},{"annotations":[92778,95821,107572],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006240"},{"annotations":[71368],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006233"},{"annotations":[71367],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006227"},{"annotations":[80765],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006225"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of pyrimidine nucleoside diphosphate, a compound consisting of a pyrimidine base linked to a ribose or deoxyribose sugar esterified with diphosphate on the sugar.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside diphosphate biosynthetic process","termid":"GO:0009133"},{"relation_name":"is_a","term_name":"pyrimidine nucleoside diphosphate metabolic process","termid":"GO:0009138"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00779":null,"SJAG_00885":null,"SJAG_02874":null,"SJAG_04657":null,"SJAG_04665":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0055086"],"is_obsolete":false,"name":"pyrimidine nucleoside diphosphate biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"pyrimidine nucleoside diphosphate anabolism","type":"exact"},{"name":"pyrimidine nucleoside diphosphate biosynthesis","type":"exact"},{"name":"pyrimidine nucleoside diphosphate formation","type":"exact"},{"name":"pyrimidine nucleoside diphosphate synthesis","type":"exact"}],"termid":"GO:0009139","terms_by_termid":{"GO:0006225":null,"GO:0006227":null,"GO:0006233":null,"GO:0006240":null,"GO:0046705":null}}


id: MONDO:0019641
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pauci-immune glomerulonephritis (GN) is one of the most frequent causes of rapidly progressive GN (RPGN). It is characterized clinically by renal manifestations of RPGN (hematuria, hypertension) leading to renal failure within days or weeks, and may be associated with manifestations of systemic vasculitis (arthralgia, fever, seizures, mono neuritis and lung involvement). Pauci-immune GN is histologically characterized by focal necrotizing and crescentic GN, with mild or absent glomerular staining for immunoglobulin and complement by fluorescence microscopy, which may manifest either as part of a systemic small vessel vasculitis (including microscopic polyangiitis, granulomatosis with polyangiitis and eosinophilic granulomatosis with polyangiitis), or rarely as part of renal-limited vasculitis (RLV, idiopathic crescentic GN). Immunologic classification is based on the presence or absence of circulating anti-neutrophil cytoplasmic antibodies (ANCAs), namely pauci-immune-GN with ANCA and pauci-immune GN without ANCA.","definition_xrefs":["Orphanet:93126"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete secondary glomerular disease (obsolete MONDO:0019724)","termid":"MONDO:0019724"},{"relation_name":"is_a","term_name":"glomerulonephritis","termid":"MONDO:0002462"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"Pauci-immune glomerulonephritis","secondary_identifiers":["icd11.foundation:1359757645","MEDGEN:575439","UMLS:C0343196","GARD:19175"],"termid":"MONDO:0019641","xrefs":{"Monarch":{"xref_id":"0019641"}}}


id: GO:0016356
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete organophosphorus susceptibility/resistance (obsolete GO:0016356)","synonyms":[{"name":"organophosphorus susceptibility/resistance","type":"exact"}],"termid":"GO:0016356"}


id: MONDO:0032740
data:
  {"annotated_genes":["SJAG_00244"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87465],"is_not":false,"summary":null,"term":"MONDO:0032740"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hearing loss, autosomal recessive","termid":"MONDO:0019588"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00244":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019497"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0019497"],"is_obsolete":false,"name":"hearing loss, autosomal recessive 100","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5193087","OMIM:618422","MEDGEN:1682525","GARD:22660","DOID:0111638"],"synonyms":[{"name":"DFNB100","type":"narrow"},{"name":"deafness, autosomal recessive 100","type":"narrow"}],"termid":"MONDO:0032740","terms_by_termid":{"MONDO:0032740":null},"xrefs":{"Monarch":{"xref_id":"0032740"}}}


id: PBO:0068219
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 526","termid":"PBO:0068219"}


id: PBO:0044742
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD-box helicase 20","termid":"PBO:0044742"}


id: PBO:0063768
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PHD finger protein 1","termid":"PBO:0063768"}


id: GO:0010228
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process involved in transforming a meristem that produces vegetative structures, such as leaves, into a meristem that produces reproductive structures, such as a flower or an inflorescence.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"part_of","term_name":"post-embryonic development","termid":"GO:0009791"},{"relation_name":"part_of","term_name":"reproductive structure development","termid":"GO:0048608"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"vegetative to reproductive phase transition of meristem","synonyms":[{"name":"floral evocation","type":"related"},{"name":"flowering","type":"related"},{"name":"transition from vegetative to reproductive phase","type":"exact"}],"termid":"GO:0010228"}


id: PBO:0085778
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of the AP180 family, involved in clathrin cage assembly; binds Pan1p and clathrin; YAP1801 has a paralog, YAP1802, that arose from the whole genome duplication","termid":"PBO:0085778"}


id: FYPO:0003239
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of phosphodiesterase I activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nuclease activity","termid":"FYPO:0003163"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000661","FYPO:0000652","FYPO:0001985","FYPO:0000707"],"is_obsolete":false,"name":"abnormal phosphodiesterase I activity","termid":"FYPO:0003239"}


id: PBO:0029524
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_swollen_spheroid_vegetative_cell","termid":"PBO:0029524"}


id: GO:0090708
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the polarity of a plant organ axis is specified.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"specification of axis polarity","termid":"GO:0065001"},{"relation_name":"part_of","term_name":"plant organ morphogenesis","termid":"GO:1905392"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"specification of plant organ axis polarity","termid":"GO:0090708"}


id: PR:Q10348
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An endonuclease V that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01577","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endonuclease C1F12.06c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1F12.06c","secondary_identifiers":["UniProtKB:Q10348"],"synonyms":[{"name":"Spom972h-ENDOV","type":"exact"}],"termid":"PR:Q10348"}


id: MOD:01309
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative - ","definition_xrefs":["Unimod:332#Y"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thiophosphate labeled with biotin-HPDP","termid":"MOD:00639"},{"relation_name":"is_a","term_name":"modified L-tyrosine residue","termid":"MOD:00919"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thiophosphate labeled with biotin-HPDP - site Y","synonyms":[{"name":"Thiophos-S-S-biotin","type":"related"},{"name":"thiophosphate labeled with biotin-HPDP","type":"related"}],"termid":"MOD:01309"}


id: PR:P10506
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- byr1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P10506"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein kinase byr1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1D4.13","synonyms":[{"name":"MAPK kinase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"MAPKK (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-byr1","type":"exact"}],"termid":"PR:P10506"}


id: PBO:0001878
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"human TRF ortholog Taz1","termid":"PBO:0001878"}


id: GO:2000300
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of synaptic vesicle exocytosis.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of neurotransmitter secretion","termid":"GO:0046928"},{"relation_name":"is_a","term_name":"regulation of regulated secretory pathway","termid":"GO:1903305"},{"relation_name":"regulates","term_name":"synaptic vesicle exocytosis","termid":"GO:0016079"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0008150","GO:0016192","GO:0023052","GO:0006810"],"is_obsolete":false,"name":"regulation of synaptic vesicle exocytosis","termid":"GO:2000300"}


id: PBO:0060706
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit A5 pseudogene 3","termid":"PBO:0060706"}


id: MONDO:1012408
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"colorectal hamartomatous polyposis and ganglioneuromatosis, non-human animal","termid":"MONDO:1011820"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"colorectal hamartomatous polyposis and ganglioneuromatosis, dog","secondary_identifiers":["OMIA:001515-9615"],"termid":"MONDO:1012408","xrefs":{"Monarch":{"xref_id":"1012408"}}}


id: PBO:0083286
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; not conserved in closely related Saccharomyces species; partially overlaps the verified gene YNK1","termid":"PBO:0083286"}


id: PBO:0077970
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ala (anticodon AGC) 22-1","termid":"PBO:0077970"}


id: CHEBI:61049
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tacrolimus (anhydrous)","termid":"CHEBI:61049"}


id: GO:0061026
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regrowth of cardiac muscle tissue to repair injured or damaged muscle fibers in the postnatal stage.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tissue regeneration","termid":"GO:0042246"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac muscle tissue regeneration","termid":"GO:0061026"}


id: PBO:0090663
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"human mmtag2 ortholog, implicated in splicing","termid":"PBO:0090663"}


id: PBO:0067269
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 343, pseudogene","termid":"PBO:0067269"}


id: PR:Q9C1W9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- adl1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9C1W9"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA ligase 3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC713.06","synonyms":[{"name":"DNA ligase III (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-adl1","type":"exact"},{"name":"polydeoxyribonucleotide synthase [ATP] 3 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9C1W9"}


id: PBO:0042981
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromodomain helicase DNA binding protein 7","termid":"PBO:0042981"}


id: PBO:0088651
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"19S proteasome regulatory subunit Rpn8","termid":"PBO:0088651"}


id: MONDO:0032835
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spondyloepiphyseal dysplasia","termid":"MONDO:0016761"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"spondyloepiphyseal dysplasia, nishimura type","secondary_identifiers":["MEDGEN:930816","OMIM:618618","icd11.foundation:523290419","UMLS:C4305147","DOID:0112288"],"synonyms":[{"name":"SEDN","type":"related"},{"name":"SPONDYLOEPIPHYSEAL DYSPLASIA, NISHIMURA TYPE","type":"related"}],"termid":"MONDO:0032835","xrefs":{"Monarch":{"xref_id":"0032835"}}}


id: PBO:0049296
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutathione S-transferase kappa 1","termid":"PBO:0049296"}


id: GO:0098905
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of action potential creation, propagation or termination in a cardiac muscle cell of the bundle of His. This typically occurs via modulation of the activity or expression of voltage-gated ion channels.","definition_xrefs":["GOC:BHF","GOC:mtg_cardiac_conduct_nov11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cardiac muscle cell action potential","termid":"GO:0098901"},{"relation_name":"regulates","term_name":"bundle of His cell action potential","termid":"GO:0086043"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of bundle of His cell action potential","synonyms":[{"name":"regulation of bundle of His cardiac muscle cell action potential","type":"exact"}],"termid":"GO:0098905"}


id: PBO:0090698
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HECT-type ubiquitin-protein ligase E3","termid":"PBO:0090698"}


id: PBO:0055298
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2725","termid":"PBO:0055298"}


id: PR:P13681
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- dis2 gene.","definition_xrefs":["UniProtKB:P13681","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein phosphatase PP1-1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC776.02c","synonyms":[{"name":"Spom972h-dis2","type":"exact"}],"termid":"PR:P13681"}


id: PR:P49373
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- tfs1 gene.","definition_xrefs":["UniProtKB:P49373","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription elongation factor S-II (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC20H4.03c","synonyms":[{"name":"Spom972h-tfs1","type":"exact"},{"name":"TFIIS (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P49373"}


id: PBO:0073033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secretin","termid":"PBO:0073033"}


id: PBO:0046880
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 8 member A5, pseudogene","termid":"PBO:0046880"}


id: PBO:0040585
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"beta-secretase 1","termid":"PBO:0040585"}


id: PBO:0036070
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-T-shaped_cell_during_G0_to_G2_transition","termid":"PBO:0036070"}


id: MONDO:0005890
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disorder that is characterized by bone cysts and fractures, resulting from hyperparathyroidism.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bone resorption disease","termid":"MONDO:0000837"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"osteitis fibrosa","secondary_identifiers":["EFO:0007413","MEDGEN:14529","SCTID:84727000","DOID:3341","NCIT:C34875","UMLS:C0029405","MESH:D010002"],"synonyms":[{"name":"Von Recklinghausen disease of Bone","type":"exact"},{"name":"Von Recklinghausen's bone disease","type":"exact"},{"name":"Von Recklinghausen's disease of Bone","type":"exact"},{"name":"hyperparathyroid bone disease","type":"exact"},{"name":"osteitis fibrosa cystica","type":"exact"},{"name":"osteitis fibrosa cystica generalisata","type":"exact"}],"termid":"MONDO:0005890","xrefs":{"Monarch":{"xref_id":"0005890"}}}


id: PBO:0064319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipid phosphatase related 1","termid":"PBO:0064319"}


id: PBO:0078583
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 56","termid":"PBO:0078583"}


id: PBO:0078840
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Pro (anticodon TGG) 3-4","termid":"PBO:0078840"}


id: GO:1903752
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of intrinsic apoptotic signaling pathway in response to hydrogen peroxide.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:18681888"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of hydrogen peroxide-mediated programmed cell death","termid":"GO:1901300"},{"relation_name":"is_a","term_name":"positive regulation of oxidative stress-induced intrinsic apoptotic signaling pathway","termid":"GO:1902177"},{"relation_name":"is_a","term_name":"regulation of intrinsic apoptotic signaling pathway in response to hydrogen peroxide","termid":"GO:1903750"},{"relation_name":"positively_regulates","term_name":"intrinsic apoptotic signaling pathway in response to hydrogen peroxide","termid":"GO:0036481"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of intrinsic apoptotic signaling pathway in response to hydrogen peroxide","synonyms":[{"name":"activation of H2O2-induced intrinsic apoptotic signaling pathway","type":"related"},{"name":"activation of hydrogen peroxide-induced intrinsic apoptotic signaling pathway","type":"narrow"},{"name":"activation of intrinsic apoptotic signaling pathway in response to H2O2","type":"narrow"},{"name":"activation of intrinsic apoptotic signaling pathway in response to hydrogen peroxide","type":"narrow"},{"name":"positive regulation of H2O2-induced intrinsic apoptotic signaling pathway","type":"related"},{"name":"positive regulation of hydrogen peroxide-induced intrinsic apoptotic signaling pathway","type":"exact"},{"name":"positive regulation of intrinsic apoptotic signaling pathway in response to H2O2","type":"exact"},{"name":"up regulation of H2O2-induced intrinsic apoptotic signaling pathway","type":"related"},{"name":"up regulation of hydrogen peroxide-induced intrinsic apoptotic signaling pathway","type":"exact"},{"name":"up regulation of intrinsic apoptotic signaling pathway in response to H2O2","type":"exact"},{"name":"up regulation of intrinsic apoptotic signaling pathway in response to hydrogen peroxide","type":"exact"},{"name":"up-regulation of H2O2-induced intrinsic apoptotic signaling pathway","type":"related"},{"name":"up-regulation of hydrogen peroxide-induced intrinsic apoptotic signaling pathway","type":"exact"},{"name":"up-regulation of intrinsic apoptotic signaling pathway in response to H2O2","type":"exact"},{"name":"up-regulation of intrinsic apoptotic signaling pathway in response to hydrogen peroxide","type":"exact"},{"name":"upregulation of H2O2-induced intrinsic apoptotic signaling pathway","type":"related"},{"name":"upregulation of hydrogen peroxide-induced intrinsic apoptotic signaling pathway","type":"exact"},{"name":"upregulation of intrinsic apoptotic signaling pathway in response to H2O2","type":"exact"},{"name":"upregulation of intrinsic apoptotic signaling pathway in response to hydrogen peroxide","type":"exact"}],"termid":"GO:1903752"}


id: FYPO:0002834
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which chromatin silencing at centromeric regions is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromatin silencing at centromere","termid":"FYPO:0000146"},{"relation_name":"is_a","term_name":"decreased chromatin silencing","termid":"FYPO:0002353"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"decreased chromatin silencing at centromere","synonyms":[{"name":"decreased chromatin silencing at centromere during mitotic cell cycle","type":"related"},{"name":"decreased chromatin silencing at centromere during vegetative growth","type":"exact"},{"name":"decreased heterochromatin silencing at centromere","type":"related"},{"name":"reduced chromatin silencing at centromere","type":"exact"}],"termid":"FYPO:0002834"}


id: GO:0061798
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: GTP=(8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate.","definition_xrefs":["GOC:dph","GOC:ik","PMID:25896388"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-carbon lyase activity","termid":"GO:0016830"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"GTP 3',8'-cyclase activity","secondary_identifiers":["RHEA:49576","EC:4.1.99.22","MetaCyc:RXN-8340"],"termid":"GO:0061798"}


id: GO:0031257
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The portion of the plasma membrane surrounding the trailing edge of a motile cell.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"plasma membrane","termid":"GO:0005886"},{"relation_name":"part_of","term_name":"cell trailing edge","termid":"GO:0031254"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0005886"],"is_obsolete":false,"name":"cell trailing edge membrane","synonyms":[{"name":"trailing edge membrane","type":"exact"}],"termid":"GO:0031257"}


id: PBO:0070610
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 78","termid":"PBO:0070610"}


id: PBO:0074703
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 71C","termid":"PBO:0074703"}


id: PBO:0066438
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"resistin like beta","termid":"PBO:0066438"}


id: PBO:0064389
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PMS1 homolog 2, mismatch repair system component pseudogene 11","termid":"PBO:0064389"}


id: GO:0120194
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involved in the dehiscence of an anther to release the pollen grains contained within it.","definition_xrefs":["GOC:lr","PMID:30911018"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of reproductive process","termid":"GO:2000241"},{"relation_name":"regulates","term_name":"anther dehiscence","termid":"GO:0009901"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of anther dehiscence","termid":"GO:0120194"}


id: GO:0051840
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of cytolysis by that organism of cells in its symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:add"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation by host of cytolysis of symbiont cells (obsolete GO:0051840)","synonyms":[{"name":"down regulation by host of cytolysis of symbiont cells","type":"exact"},{"name":"down-regulation by host of cytolysis of symbiont cells","type":"exact"},{"name":"downregulation by host of cytolysis of symbiont cells","type":"exact"},{"name":"inhibition by host of cytolysis of symbiont cells","type":"narrow"}],"termid":"GO:0051840"}


id: PBO:0076128
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine/tyrosine interacting like 2","termid":"PBO:0076128"}


id: PBO:0079828
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ULK4 pseudogene 3","termid":"PBO:0079828"}


id: PBO:0046463
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"equatorin","termid":"PBO:0046463"}


id: GO:0045552
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: cis-3,4-leucopelargonidin + NADP+ = (+)-dihydrokaempferol + NADPH + H+.","definition_xrefs":["EC:1.1.1.219"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"dihydrokaempferol 4-reductase activity","secondary_identifiers":["MetaCyc:DIHYDROKAEMPFEROL-4-REDUCTASE-RXN","RHEA:23016"],"synonyms":[{"name":"NADPH-dihydromyricetin reductase activity","type":"related"},{"name":"cis-3,4-leucopelargonidin:NADP+ 4-oxidoreductase activity","type":"related"},{"name":"dihydroflavanol 4-reductase activity","type":"related"},{"name":"dihydroflavonol 4-reductase activity","type":"related"},{"name":"dihydromyricetin reductase activity","type":"related"},{"name":"dihydroquercetin reductase activity","type":"related"}],"termid":"GO:0045552"}


id: PBO:0048969
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycerol-3-phosphate acyltransferase, mitochondrial","termid":"PBO:0048969"}


id: FYECO:0000212
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which ethanol was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ ethanol","termid":"FYECO:0000212"}


id: PBO:0072264
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S21 pseudogene 2","termid":"PBO:0072264"}


id: PBO:0111343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small subunit processome, U3 snoRNP-associated protein Utp1","termid":"PBO:0111343"}


id: MONDO:0012240
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any nemaline myopathy in which the cause of the disease is a mutation in the TPM2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"typical nemaline myopathy","termid":"MONDO:0015737"},{"relation_name":"is_a","term_name":"childhood-onset nemaline myopathy","termid":"MONDO:0015738"},{"relation_name":"is_a","term_name":"TPM2-related myopathy","termid":"MONDO:0100196"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0005336","MONDO:0002320"],"is_obsolete":false,"name":"congenital myopathy 23","secondary_identifiers":["UMLS:C1836447","MESH:C538351","NCIT:C164225","DOID:0110932","GARD:15454","MEDGEN:324513","OMIM:609285"],"synonyms":[{"name":"CAPM2","type":"exact"},{"name":"NEM4","type":"exact"},{"name":"TPM2 nemaline myopathy","type":"exact"},{"name":"cap myopathy 2","type":"exact"},{"name":"nemaline myopathy 4","type":"exact"},{"name":"nemaline myopathy 4, autosomal dominant","type":"exact"},{"name":"nemaline myopathy caused by mutation in TPM2","type":"exact"},{"name":"nemaline myopathy type 4","type":"exact"}],"termid":"MONDO:0012240","xrefs":{"Monarch":{"xref_id":"0012240"}}}


id: PBO:0086973
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Regulatory subunit of protein phosphatase 1 (Glc7p); involved in glycogen metabolism and chromosome segregation; proposed to regulate Glc7p activity via conformational alteration; ortholog of the mammalian protein phosphatase inhibitor 2; protein abundance increases in response to DNA replication stress","termid":"PBO:0086973"}


id: MONDO:0019199
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Interstitial granulomatous dermatitis with arthritis is a rare rheumatologic disease characterized by the occurrence of inflammatory arthritis in association with large, erythematous, symmetrical cutaneous lesions (ranging from typical, but infrequent, cord-like lesions on the flanks to more common violaceous plaques on the trunk and limbs) featuring a typical histologic infiltrate mainly constituted of histiocytes.","definition_xrefs":["Orphanet:79099"],"direct_ancestors":[{"relation_name":"is_a","term_name":"skin disorder","termid":"MONDO:0005093"},{"relation_name":"is_a","term_name":"rheumatic disorder","termid":"MONDO:0005554"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"interstitial granulomatous dermatitis with arthritis","secondary_identifiers":["GARD:18940","MEDGEN:1658052","UMLS:C4751206"],"synonyms":[{"name":"Ackerman dermatitis syndrome","type":"exact"},{"name":"IGDA","type":"exact"}],"termid":"MONDO:0019199","xrefs":{"Monarch":{"xref_id":"0019199"}}}


id: MONDO:0859285
data:
  {"annotated_genes":["SJAG_02750"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86077],"is_not":false,"summary":null,"term":"MONDO:0859285"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02750":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with microcephaly, short stature, and speech delay","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:620027","MEDGEN:1823984","UMLS:C5774211"],"termid":"MONDO:0859285","terms_by_termid":{"MONDO:0859285":null},"xrefs":{"Monarch":{"xref_id":"0859285"}}}


id: PBO:0087943
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Translation elongation factor eIF-5A; required for translation of proteins containing polyproline stretches, including Bni1p, and this leads to a requirement for mating projection formation; structural homolog of bacterial EF-P; undergoes an essential hypusination modification; HYP2 has a paralog, ANB1, that arose from the whole genome duplication; human EIF5A complements the inviability of the yeast hyp2 anb1 double null mutant","termid":"PBO:0087943"}


id: PR:P87293
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC16A10.01 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P87293"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized UPF0442 protein C16A10.01 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC16A10.01","synonyms":[{"name":"Spom972h-SPAC16A10.01","type":"exact"}],"termid":"PR:P87293"}


id: FYPO:0005542
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which telomerase template activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal DNA binding","termid":"FYPO:0000656"},{"relation_name":"is_a","term_name":"abnormal metabolic process","termid":"FYPO:0000860"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000653"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0005447","FYPO:0001985","FYPO:0000653","FYPO:0000002","FYPO:0000707"],"is_obsolete":false,"name":"abnormal telomerase template activity","synonyms":[{"name":"abnormal telomerase RNA activity","type":"exact"},{"name":"abnormal template for synthesis of G-rich strand of telomere DNA activity","type":"exact"}],"termid":"FYPO:0005542"}


id: PBO:0086565
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; conserved among S. cerevisiae strains; YMR320W is not an essential gene","termid":"PBO:0086565"}


id: MONDO:0013660
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arthrogryposis, Perthes disease, and upward gaze palsy","secondary_identifiers":["UMLS:C3280309","MEDGEN:481939","OMIM:614262"],"synonyms":[{"name":"APUG","type":"related"},{"name":"arthrogryposis, Perthes disease, and upward gaze palsy","type":"exact"}],"termid":"MONDO:0013660","xrefs":{"Monarch":{"xref_id":"0013660"}}}


id: MONDO:0007698
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hand-foot-genital syndrome (HFGS) is a very rare multiple congenital abnormality syndrome characterized by distal limb malformations and urogenital defects.","definition_xrefs":["Orphanet:2438"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"reproductive system disorder","termid":"MONDO:0005039"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome without intellectual disability","termid":"MONDO:0015161"},{"relation_name":"is_a","term_name":"dysostosis","termid":"MONDO:0018234"},{"relation_name":"is_a","term_name":"congenital limb malformation","termid":"MONDO:0019054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0005497","MONDO:0000426"],"is_obsolete":false,"name":"hand-foot-genital syndrome","secondary_identifiers":["GARD:2594","ICD9:759.89","MEDGEN:331103","MESH:C535627","MedDRA:10072361","DOID:0060739","OMIM:140000","UMLS:C1841679","SCTID:702425002"],"synonyms":[{"name":"HFG","type":"related"},{"name":"HFG syndrome","type":"related"},{"name":"HFGS","type":"exact"},{"name":"HFU syndrome","type":"related"},{"name":"hand foot genital syndrome","type":"related"},{"name":"hand foot uterus syndrome","type":"related"},{"name":"hand-foot-genital syndrome","type":"exact"},{"name":"hand-foot-uterus syndrome","type":"exact"}],"termid":"MONDO:0007698","xrefs":{"Monarch":{"xref_id":"0007698"}}}


id: MONDO:0001685
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"chronic conjunctivitis","termid":"MONDO:0002314"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"chronic follicular conjunctivitis","secondary_identifiers":["MEDGEN:509808","ICD9:372.12","SCTID:39429002","DOID:13326","UMLS:C0155147"],"termid":"MONDO:0001685","xrefs":{"Monarch":{"xref_id":"0001685"}}}


id: PBO:0048042
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibrous sheath interacting protein 2 like, pseudogene","termid":"PBO:0048042"}


id: MONDO:0003839
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant neoplasm of the ovary with an invasive epithelial component and a fibrotic stroma. The epithelial component is characterized by the presence of malignant epithelial cells with intracytoplasmic mucin. Cystic spaces are also present which contain mucoid material.","definition_xrefs":["NCIT:C40034"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenocarcinofibroma","termid":"MONDO:0002991"},{"relation_name":"is_a","term_name":"mucinous ovarian cancer","termid":"MONDO:0024282"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"ovarian mucinous adenocarcinofibroma","secondary_identifiers":["MEDGEN:384497","UMLS:C2212014","DOID:6278","ICDO:9015/3"],"synonyms":[{"name":"ovarian mucinous adenocarcinofibroma","type":"exact"},{"name":"ovarian mucinous malignant adenofibroma","type":"exact"}],"termid":"MONDO:0003839","xrefs":{"Monarch":{"xref_id":"0003839"}}}


id: PBO:0056569
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microcephalin 1","termid":"PBO:0056569"}


id: PBO:0085801
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; contains transmembrane domains; involved in secretion of proteins that lack classical secretory signal sequences; component of the detergent-insoluble glycolipid-enriched complexes (DIGs); NCE102 has a paralog, FHN1, that arose from the whole genome duplication","termid":"PBO:0085801"}


id: MONDO:0016523
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Bronchogenic cysts (BCs) are congenital malformations resulting from abnormal budding of the foregut and are most commonly found in the mediastinum.","definition_xrefs":["Orphanet:2357"],"direct_ancestors":[{"relation_name":"is_a","term_name":"respiratory system disorder","termid":"MONDO:0005087"},{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bronchogenic cyst","secondary_identifiers":["GARD:1025","MESH:D001994","HP:0100730","icd11.foundation:355400995","MedDRA:10064585","MEDGEN:668","UMLS:C0006281"],"synonyms":[{"name":"bronchogenic cyst","type":"exact"},{"name":"bronchogenic cyst (disease)","type":"exact"}],"termid":"MONDO:0016523","xrefs":{"Monarch":{"xref_id":"0016523"}}}


id: GO:0032678
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of interleukin-9 production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytokine production","termid":"GO:0001817"},{"relation_name":"regulates","term_name":"interleukin-9 production","termid":"GO:0032638"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of interleukin-9 production","secondary_identifiers":["GO:0045417"],"synonyms":[{"name":"regulation of IL-9 production","type":"exact"},{"name":"regulation of interleukin-9 biosynthetic process","type":"narrow"}],"termid":"GO:0032678"}


id: PBO:0059249
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L18","termid":"PBO:0059249"}


id: MONDO:0015740
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Trisomy 18p is an extremely rare chromosomal anomaly with a poorly defined clinical phenotype. Reported manifestations include short stature, mild, moderate or severe developmental delay and intellectual disability, variable but mild facial dysmorphism, and epilepsy.","definition_xrefs":["Orphanet:1715"],"direct_ancestors":[{"relation_name":"is_a","term_name":"partial trisomy/tetrasomy of the short arm of chromosome 18","termid":"MONDO:0016951"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trisomy 18p","secondary_identifiers":["icd11.foundation:2079728626","UMLS:C2931811","GARD:5323","MESH:C538307","MEDGEN:419907"],"synonyms":[{"name":"18p duplication","type":"related"},{"name":"18p trisomy","type":"related"},{"name":"Duplication 18p","type":"exact"},{"name":"Duplication of the short arm of chromosome 18","type":"exact"},{"name":"chromosome 18p duplication","type":"related"},{"name":"partial trisomy 18p","type":"related"},{"name":"trisomy of the short arm of chromosome 18","type":"exact"},{"name":"trisomy type 18p","type":"exact"}],"termid":"MONDO:0015740","xrefs":{"Monarch":{"xref_id":"0015740"}}}


id: PBO:0090503
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase Dbp3","termid":"PBO:0090503"}


id: PATO:0002117
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A morphology quality inhering in a bearer by virtue of the bearer's exhbiting the morphological characteristics of a gland.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"morphology","termid":"PATO:0000051"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glandular","termid":"PATO:0002117"}


id: PBO:0052787
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 26","termid":"PBO:0052787"}


id: MONDO:0010409
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"X-linked intellectual disability, Shrimpton type is characterized by the association of severe intellectual deficit with microcephaly, strabismus and short stature. It has been described in three boys from two unrelated families. Transmission is X-linked recessive and the causative gene has been localized to the q12-Xq21.31 region of the X-chromosome.","definition_xrefs":["Orphanet:85324"],"direct_ancestors":[{"relation_name":"is_a","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syndromic X-linked intellectual disability Shrimpton type","secondary_identifiers":["DOID:0060813","MEDGEN:395523","GARD:16751","MESH:C567474","OMIM:300709","UMLS:C2678039"],"synonyms":[{"name":"MRXS9","type":"exact"},{"name":"X-linked intellectual disability, Shrimpton type","type":"related"},{"name":"intellectual disability, X-linked, syndromic 9","type":"exact"},{"name":"mental retardation, X-linked, syndromic 9","type":"exact"}],"termid":"MONDO:0010409","xrefs":{"Monarch":{"xref_id":"0010409"}}}


id: PBO:0038821
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADAM metallopeptidase domain 24, pseudogene","termid":"PBO:0038821"}


id: GO:0002770
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by an extracellular ligand binding to a receptor on the surface of a T cell capable of inhibiting an immune effector process contributing to an immune response.","definition_xrefs":["GOC:add","PMID:15258309"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune response-inhibiting cell surface receptor signaling pathway","termid":"GO:0002767"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"T cell inhibitory signaling pathway","synonyms":[{"name":"T cell inhibitory signalling pathway","type":"exact"},{"name":"T lymphocyte inhibitory signaling pathway","type":"exact"},{"name":"T-cell inhibitory signaling pathway","type":"exact"},{"name":"T-lymphocyte inhibitory signaling pathway","type":"exact"}],"termid":"GO:0002770"}


id: FYPO:0001765
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which tRNA modification, the covalent alteration of one or more nucleotides within a tRNA molecule, is abnormal.","definition_xrefs":["PomBase:mah","GO:0006400"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal RNA modification","termid":"FYPO:0000370"},{"relation_name":"is_a","term_name":"abnormal tRNA processing","termid":"FYPO:0001554"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000294"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0006551","FYPO:0000294","FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abnormal tRNA modification","synonyms":[{"name":"abnormal tRNA modification during mitotic cell cycle","type":"related"},{"name":"abnormal tRNA modification during vegetative growth","type":"exact"}],"termid":"FYPO:0001765"}


id: MONDO:0030679
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Noonan syndrome","termid":"MONDO:0018997"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267","MONDO:0005046"],"is_obsolete":false,"name":"Noonan syndrome 14","secondary_identifiers":["UMLS:C5676916","MEDGEN:1807988","OMIM:619745"],"synonyms":[{"name":"NS14","type":"exact"},{"name":"Noonan syndrome 14","type":"exact"}],"termid":"MONDO:0030679","xrefs":{"Monarch":{"xref_id":"0030679"}}}


id: PBO:0074056
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 25 member 35","termid":"PBO:0074056"}


id: PBO:0085418
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Plasma membrane transporter of the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; confers resistance to short-chain monocarboxylic acids and quinidine; involved in the excretion of excess amino acids; AQR1 has a paralog, QDR1, that arose from the whole genome duplication; relocalizes from plasma membrane to cytoplasm upon DNA replication stress","termid":"PBO:0085418"}


id: GO:0045259
data:
  {"annotated_genes":["SJAG_03925","SJAG_00915","SJAG_03114","SJAG_04122","SJAG_MIT37","SJAG_00133","SJAG_00985","SJAG_02598","SJAG_00542","SJAG_MIT15","SJAG_00438","SJAG_02105","SJAG_00836","SJAG_MIT09","SJAG_07003","SJAG_02564","SJAG_05204"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[57295,57853,60043,60506,64005,64509,65241,66809,67131,67462,95178,103996,108213,116144,119357,119363,119368],"is_not":false,"summary":null,"term":"GO:0045259"}]},"cv_name":"cellular_component","definition":"A proton-transporting two-sector ATPase complex that catalyzes the phosphorylation of ADP to ATP during oxidative phosphorylation. The complex comprises a membrane sector (F0) that carries out proton transport and a cytoplasmic compartment sector (F1) that catalyzes ATP synthesis by a rotational mechanism; the extramembrane sector (containing 3 a and 3 b subunits) is connected via the d-subunit to the membrane sector by several smaller subunits. Within this complex, the g and e subunits and the 9-12 c subunits rotate by consecutive 120 degree angles and perform parts of ATP synthesis. This movement is driven by the hydrogen ion electrochemical potential gradient.","definition_xrefs":["ISBN:0198547684","ISBN:0716743663"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proton-transporting two-sector ATPase complex","termid":"GO:0016469"},{"relation_name":"is_a","term_name":"cation channel complex","termid":"GO:0034703"},{"relation_name":"is_a","term_name":"respiratory chain complex","termid":"GO:0098803"},{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00133":null,"SJAG_00438":null,"SJAG_00542":null,"SJAG_00836":null,"SJAG_00915":null,"SJAG_00985":null,"SJAG_02105":null,"SJAG_02564":null,"SJAG_02598":null,"SJAG_03114":null,"SJAG_03925":null,"SJAG_04122":null,"SJAG_05204":null,"SJAG_07003":null,"SJAG_MIT09":null,"SJAG_MIT15":null,"SJAG_MIT37":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"proton-transporting ATP synthase complex","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000043":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0045255"],"synonyms":[{"name":"F1-F0 complex","type":"exact"},{"name":"hydrogen-translocating F-type ATPase complex","type":"exact"},{"name":"hydrogen-transporting ATP synthase complex","type":"exact"},{"name":"proton-transporting F-type ATPase complex","type":"related"}],"termid":"GO:0045259","terms_by_termid":{"GO:0045259":null}}


id: GO:0098772
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id: PBO:0044462
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 4 subfamily F member 61, pseudogene","termid":"PBO:0044462"}


id: PBO:0050242
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosomal binding domain 2 pseudogene 20","termid":"PBO:0050242"}


id: PBO:0108514
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rpd3L histone deacetylase complex PHD finger subunit Cti6","termid":"PBO:0108514"}


id: GO:0052747
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  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: sinapaldehyde + NADPH + H+ = sinapyl-alcohol + NADP+.","definition_xrefs":["GOC:mengo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete sinapyl alcohol dehydrogenase activity (obsolete GO:0052747)","synonyms":[{"name":"sinapyl-alcohol dehydrogenase activity","type":"related"},{"name":"sinapyl-alcohol:NADP+ oxidoreductase activity","type":"exact"}],"termid":"GO:0052747"}


id: PBO:0080493
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"von Willebrand factor C domain containing 2 like","termid":"PBO:0080493"}


id: PBO:0032731
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfite reductase beta subunit Sir1","termid":"PBO:0032731"}


id: MONDO:0002876
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare malignant mixed epithelial and mesenchymal neoplasm that arises from the cervix and is characterized by the presence of malignant mesenchymal elements and benign epithelial elements.","definition_xrefs":["NCIT:C40229"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"cervical carcinosarcoma","termid":"MONDO:0002877"},{"relation_name":"is_a","term_name":"adenosarcoma","termid":"MONDO:0005636"},{"relation_name":"is_a","term_name":"malignant mixed epithelial and mesenchymal tumor of cervix uteri","termid":"MONDO:0016277"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"cervical adenosarcoma","secondary_identifiers":["GARD:20492","MEDGEN:308948","DOID:4111","ICD10CM:C53.0","SCTID:764847000","Orphanet:213792","UMLS:C1516426"],"synonyms":[{"name":"adenosarcoma of the cervix uteri","type":"exact"},{"name":"adenosarcoma of uterine cervix","type":"exact"},{"name":"cervical Muellerian adenosarcoma","type":"exact"},{"name":"cervical Mullerian adenosarcoma","type":"exact"},{"name":"cervical Müllerian adenosarcoma","type":"exact"},{"name":"cervical adenosarcoma","type":"exact"},{"name":"uterine cervix adenosarcoma","type":"exact"}],"termid":"MONDO:0002876","xrefs":{"Monarch":{"xref_id":"0002876"}}}


id: GO:0160131
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The controlled self-propelled movement of a sperm cell from the uterus through the uterotubal junction (UTJ) into the oviduct, where interaction between the sperm and the UTJ acts as a major selective barrier for sperm, allowing only living, motile, uncapacitated, morphologically normal sperm with intact acrosomes to pass from the uterus into the oviduct.","definition_xrefs":["PMID:32712384","GOC:krc","PMID:31131960","PMID:29353867","PMID:34057175"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell migration","termid":"GO:0016477"},{"relation_name":"part_of","term_name":"multicellular organismal reproductive process","termid":"GO:0048609"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sperm migration through the uterotubal junction","synonyms":[{"name":"sperm migration from the uterus to the oviduct","type":"exact"},{"name":"sperm migration through the UTJ","type":"related"}],"termid":"GO:0160131"}


id: PBO:0068715
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4atac small nuclear 4, pseudogene","termid":"PBO:0068715"}


id: PBO:0079067
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Trp (anticodon CCA) 3-1","termid":"PBO:0079067"}


id: PBO:0065438
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome 26S subunit, ATPase 1 pseudogene 11","termid":"PBO:0065438"}


id: MONDO:0015079
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  {"annotated_genes":["SJAG_03920","SJAG_02398","SJAG_00260"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85752,85753,85754],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011740"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete inherited neuroendocrine tumor (obsolete MONDO:0025511)","termid":"MONDO:0025511"},{"relation_name":"is_a","term_name":"polyendocrinopathy","termid":"MONDO:0015126"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00260":null,"SJAG_02398":null,"SJAG_03920":null},"genotype_count":0,"is_obsolete":false,"name":"multiple polyglandular tumor","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["Orphanet:100094","ICD10WHO:D44.8","icd11.foundation:1316827435","GARD:19766","MEDGEN:1863613","UMLS:C5848154"],"termid":"MONDO:0015079","terms_by_termid":{"MONDO:0011740":null},"xrefs":{"Monarch":{"xref_id":"0015079"}}}


id: MONDO:0015856
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  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"breast disorder","termid":"MONDO:0002657"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syndromic breast hypoplasia/aplasia","secondary_identifiers":["Orphanet:180193","UMLS:C5680482","GARD:20196","MEDGEN:1842220"],"termid":"MONDO:0015856","xrefs":{"Monarch":{"xref_id":"0015856"}}}


id: PBO:0109043
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BLTP3B divergent transcript","termid":"PBO:0109043"}


id: PR:000027591
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A fungal histone H3.2, initiator methionine removed phosphorylated 1 in Schizosaccharomyces pombe. Phosphorylated by Haspin. Example: UniProtKB:P09988-1, 2-136, Thr-4, MOD:00047.","definition_xrefs":["PMID:20929775","PomBase:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H3.2, initiator methionine removed form (Schizosaccharomyces pombe)","termid":"PR:000027580"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hht2/Phos(T3)","pombase_gene_id":"SPBC8D2.04","synonyms":[{"name":"H3-pT3","type":"related"},{"name":"PomBase_original_PRO_term_name: histone H3.2, initiator methionine removed phosphorylated 1 (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-hht2/InitMet-/Phos:1","type":"exact"},{"name":"hht2/InitMet-/Phos:(T4)","type":"exact"},{"name":"hht2/Phos(T3)","type":"exact"}],"termid":"PR:000027591"}


id: GO:0016993
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  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: precorrin-8X = hydrogenobyrinate.","definition_xrefs":["EC:5.4.99.61"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular acyltransferase activity","termid":"GO:0016867"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0016853","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"precorrin-8X methylmutase activity","secondary_identifiers":["RHEA:22512","MetaCyc:5.4.1.2-RXN"],"synonyms":[{"name":"HBA synthase activity","type":"related"},{"name":"hydrogenobyrinic acid-binding protein activity","type":"narrow"},{"name":"precorrin isomerase activity","type":"related"},{"name":"precorrin-8X 11,12-methylmutase activity","type":"exact"}],"termid":"GO:0016993"}


id: MONDO:0800478
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A syndrome characterized by an uncommon and relatively unknown cause of facial ulceration that occurs after damage to the trigeminal nerve. It characteristically involves non-healing facial ulceration(s) with accompanying anesthesia, paresthesia, and dysesthesia along the distribution of a trigeminal dermatome.","definition_xrefs":["PMID:37089852"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trigeminal trophic syndrome","secondary_identifiers":["Orphanet:664901","MEDGEN:698241","icd11.foundation:983392135","UMLS:C1274928"],"synonyms":[{"name":"TTS","type":"exact"}],"termid":"MONDO:0800478","xrefs":{"Monarch":{"xref_id":"0800478"}}}


id: PBO:0053556
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 563","termid":"PBO:0053556"}


id: PBO:0003697
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  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sfr1 assembly at DNA damage sites is dependent on Rhp51","termid":"PBO:0003697"}


id: PBO:0003599
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor TFIIIC complex subunit Sfc9 (predicted)","termid":"PBO:0003599"}


id: PBO:0041112
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"binder of sperm protein homolog 1","termid":"PBO:0041112"}


id: GO:0031414
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  {"annotated_genes":["SJAG_02920","SJAG_04631","SJAG_02726","SJAG_03045","SJAG_01826","SJAG_03215","SJAG_04131","SJAG_04179","SJAG_06449"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[76312,70427,77711,71186],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031415"},{"annotations":[70916,78247],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031416"},{"annotations":[72609,67329,75586],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031417"}]},"cv_name":"cellular_component","definition":"A complex that catalyzes the transfer of an acetyl group to the N-terminal residue of a protein acceptor molecule.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein acetyltransferase complex","termid":"GO:0031248"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":9,"genes_by_uniquename":{"SJAG_01826":null,"SJAG_02726":null,"SJAG_02920":null,"SJAG_03045":null,"SJAG_03215":null,"SJAG_04131":null,"SJAG_04179":null,"SJAG_04631":null,"SJAG_06449":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"N-terminal protein acetyltransferase complex","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null},"synonyms":[{"name":"NAT complex","type":"exact"}],"termid":"GO:0031414","terms_by_termid":{"GO:0031415":null,"GO:0031416":null,"GO:0031417":null}}


id: PBO:0049425
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GUSB pseudogene 2","termid":"PBO:0049425"}


id: GO:0051035
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  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of DNA, deoxyribonucleic acid, from one side of a membrane to the other.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleic acid transmembrane transporter activity","termid":"GO:0051032"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"DNA transmembrane transporter activity","termid":"GO:0051035"}


id: PBO:0042422
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell division cycle 27 pseudogene 6","termid":"PBO:0042422"}


id: GO:0042205
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of chlorinated hydrocarbons, compounds derived from hydrocarbons by replacing one or more hydrogen atoms with chlorine atoms.","definition_xrefs":["GOC:krc","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chlorinated hydrocarbon metabolic process","termid":"GO:0042196"},{"relation_name":"is_a","term_name":"halogenated hydrocarbon catabolic process","termid":"GO:0042206"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"chlorinated hydrocarbon catabolic process","synonyms":[{"name":"chlorinated hydrocarbon breakdown","type":"exact"},{"name":"chlorinated hydrocarbon catabolism","type":"exact"},{"name":"chlorinated hydrocarbon degradation","type":"exact"}],"termid":"GO:0042205"}


id: PBO:0057365
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 548ah","termid":"PBO:0057365"}


id: PBO:0004878
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"APC amino acid transporter (predicted)","termid":"PBO:0004878"}


id: PBO:0063372
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prenylcysteine oxidase 1 like","termid":"PBO:0063372"}


id: GO:0061810
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: NAD+ + H2O = nicotinamide + ADP-ribose without proceeding through a cyclic ADP-ribose intermediate.","definition_xrefs":["GOC:pde","GOC:dph","GOC:pad","GOC:PARL","PMID:11866528"],"gene_count":0,"genotype_count":0,"name":"obsolete NAD glycohydrolase activity (obsolete GO:0061810)","termid":"GO:0061810"}


id: GO:0045585
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cytotoxic T cell differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of T cell differentiation","termid":"GO:0045582"},{"relation_name":"is_a","term_name":"regulation of cytotoxic T cell differentiation","termid":"GO:0045583"},{"relation_name":"positively_regulates","term_name":"cytotoxic T cell differentiation","termid":"GO:0045065"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"positively_regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"positive regulation of cytotoxic T cell differentiation","synonyms":[{"name":"activation of cytotoxic T cell differentiation","type":"narrow"},{"name":"positive regulation of cytotoxic T cell development","type":"related"},{"name":"positive regulation of cytotoxic T lymphocyte differentiation","type":"exact"},{"name":"positive regulation of cytotoxic T-cell differentiation","type":"exact"},{"name":"positive regulation of cytotoxic T-lymphocyte differentiation","type":"exact"},{"name":"stimulation of cytotoxic T cell differentiation","type":"narrow"},{"name":"up regulation of cytotoxic T cell differentiation","type":"exact"},{"name":"up-regulation of cytotoxic T cell differentiation","type":"exact"},{"name":"upregulation of cytotoxic T cell differentiation","type":"exact"}],"termid":"GO:0045585"}


id: PBO:0034142
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-in_regulogy_relationship_with","termid":"PBO:0034142"}


id: MONDO:0013023
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"orofacial cleft","termid":"MONDO:0000358"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"orofacial cleft 12","secondary_identifiers":["MEDGEN:411596","OMIM:612858","DOID:0080405","UMLS:C2748505","MESH:C567548"],"synonyms":[{"name":"OFC12","type":"exact"},{"name":"cleft lip with or without cleft palate, nonsyndromic, 12","type":"related"},{"name":"orofacial cleft 12","type":"exact"}],"termid":"MONDO:0013023","xrefs":{"Monarch":{"xref_id":"0013023"}}}


id: FYPO:0003806
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which a cell population does not grow in a medium containing one or more non-fermentable substance(s) as the only carbon source(s).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished vegetative cell population growth","termid":"FYPO:0001575"},{"relation_name":"is_a","term_name":"decreased cell population growth on non-fermentable carbon source","termid":"FYPO:0003805"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0002058","FYPO:0002057","FYPO:0000139","FYPO:0005447","FYPO:0001985","FYPO:0002060","FYPO:0000003"],"is_obsolete":false,"name":"abolished cell population growth on non-fermentable carbon source","synonyms":[{"name":"abolished growth on non-fermentable carbon source","type":"broad"},{"name":"abolished non-fermentable carbon source utilization","type":"related"},{"name":"abolished vegetative cell population growth on non-fermentable carbon source","type":"exact"},{"name":"cell population growth on non-fermentable carbon source abolished","type":"exact"}],"termid":"FYPO:0003806"}


id: GO:1990357
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An actin-rich cytoskeletal network located beneath the microvilli of the apical plasma membrane of polarized epithelial cells. In addition to actin filaments, the terminal web may contain actin-binding proteins, myosin motor proteins, and intermediate filaments. The terminal web can function as a contractile structure that influences the spatial distribution of microvilli as well as the development and morphogenesis of tissues containing polarized epithelial cells.","definition_xrefs":["PMID:7511618","GOC:kmv","PMID:24677443","Wikipedia:Terminal_web","PMID:19437512"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cortical actin cytoskeleton","termid":"GO:0030864"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0015629"},{"rel_name":"part_of","termid":"GO:0005938"}],"interesting_parent_ids":["GO:0005938","GO:0005737","GO:0015629","GO:0005575"],"is_obsolete":false,"name":"terminal web","termid":"GO:1990357"}


id: GO:2001277
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of L-leucine biosynthetic process.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of small molecule metabolic process","termid":"GO:0062014"},{"relation_name":"is_a","term_name":"negative regulation of amino acid biosynthetic process","termid":"GO:2000283"},{"relation_name":"is_a","term_name":"regulation of L-leucine biosynthetic process","termid":"GO:2001276"},{"relation_name":"negatively_regulates","term_name":"L-leucine biosynthetic process","termid":"GO:0009098"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006520"},{"rel_name":"negatively_regulates","termid":"GO:0006520"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"negative regulation of L-leucine biosynthetic process","synonyms":[{"name":"negative regulation of L-leucine anabolism","type":"exact"},{"name":"negative regulation of L-leucine biosynthesis","type":"exact"},{"name":"negative regulation of L-leucine formation","type":"exact"},{"name":"negative regulation of L-leucine synthesis","type":"exact"},{"name":"negative regulation of leucine biosynthetic process","type":"broad"}],"termid":"GO:2001277"}


id: GO:0044305
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The terminal specialization of a calyciferous axon which forms large synapses in the mammalian auditory central nervous system.","definition_xrefs":["NIF_Subcellular:sao1684283879","PMID:11823805"],"direct_ancestors":[{"relation_name":"is_a","term_name":"axon terminus","termid":"GO:0043679"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"calyx of Held","termid":"GO:0044305"}


id: PR:O13944
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An oxysterol-binding protein-related protein 11 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oxysterol-binding protein homolog C23H4.01c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23H4.01c","secondary_identifiers":["UniProtKB:O13944"],"synonyms":[{"name":"Spom972h-OSBPL11","type":"exact"}],"termid":"PR:O13944"}


id: MONDO:0007961
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"megalencephaly","termid":"MONDO:0016608"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"megalencephaly, autosomal dominant","secondary_identifiers":["OMIM:155350","MEDGEN:812057","UMLS:C3805727"],"synonyms":[{"name":"megalencephaly, autosomal dominant","type":"exact"}],"termid":"MONDO:0007961","xrefs":{"Monarch":{"xref_id":"0007961"}}}


id: PBO:0038935
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alcohol dehydrogenase 1C (class I), gamma polypeptide","termid":"PBO:0038935"}


id: GO:0010820
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of T cell chemotaxis. T cell chemotaxis is the directed movement of a T cell in response to an external stimulus.","definition_xrefs":["GOC:tb","GOC:dph","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of T cell chemotaxis","termid":"GO:0010819"},{"relation_name":"is_a","term_name":"positive regulation of lymphocyte chemotaxis","termid":"GO:0140131"},{"relation_name":"is_a","term_name":"positive regulation of T cell migration","termid":"GO:2000406"},{"relation_name":"positively_regulates","term_name":"T cell chemotaxis","termid":"GO:0010818"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of T cell chemotaxis","termid":"GO:0010820"}


id: PBO:0088780
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dysferlin-like membrane trafficking protein Mug65","termid":"PBO:0088780"}


id: GO:0060530
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a smooth muscle cell of the prostate glandular acinus.","definition_xrefs":["PMID:18977204","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"smooth muscle cell differentiation","termid":"GO:0051145"},{"relation_name":"part_of","term_name":"prostate glandular acinus development","termid":"GO:0060525"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"smooth muscle cell differentiation involved in prostate glandular acinus development","termid":"GO:0060530"}


id: PR:Q9HDX6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pof15 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9HDX6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box protein pof15 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAPB1A10.14","synonyms":[{"name":"Spom972h-pof15","type":"exact"}],"termid":"PR:Q9HDX6"}


id: PBO:0045550
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dual specificity phosphatase 5","termid":"PBO:0045550"}


id: GO:0046565
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-dehydroshikimate = 3,4-dihydroxybenzoate + H2O. 3,4-dihydroxybenzoate is also known as protocatechuate.","definition_xrefs":["MetaCyc:DHSHIKIMATE-DEHYDRO-RXN","EC:4.2.1.118"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"3-dehydroshikimate dehydratase activity","secondary_identifiers":["RHEA:24848"],"termid":"GO:0046565"}


id: SOFP:synonym
data:
  {"annotation_feature_type":"gene","cv_name":"feature_property","definition":"Historic community symbol, may have originally been symbol","direct_ancestors":[{"relation_name":"is_a","term_name":"feature_property","termid":"SOFP:feature_property"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synonym","termid":"SOFP:synonym"}


id: MONDO:0016868
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndrome caused by partial chromosomal deletion","termid":"MONDO:0000761"},{"relation_name":"is_a","term_name":"chromosome 3 disorder","termid":"MONDO:0700010"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"partial deletion of chromosome 3","secondary_identifiers":["MEDGEN:1826012","GARD:20791","Orphanet:261776","UMLS:C5679651"],"synonyms":[{"name":"partial deletion of chromosome type 3","type":"exact"},{"name":"partial monosomy of chromosome 3","type":"exact"}],"termid":"MONDO:0016868","xrefs":{"Monarch":{"xref_id":"0016868"}}}


id: PBO:0001722
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA 2'-O-methyltransferase Trm13 (predicted)","termid":"PBO:0001722"}


id: GO:0003028
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that modulates blood pressure by the action of chemoreceptors found in the aortic bodies and their resultant modulation of the vasomotor center. Chemoreceptors respond to oxygen, carbon dioxide and hydrogen ions.","definition_xrefs":["GOC:mtg_cardio","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of systemic arterial blood pressure by chemoreceptor signaling","termid":"GO:0001979"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of systemic arterial blood pressure by aortic body chemoreceptor signaling","synonyms":[{"name":"aortic body chemoreceptor regulation of systemic arterial blood pressure","type":"exact"},{"name":"aortic body chemoreceptor response to lowering of systemic arterial blood pressure","type":"exact"},{"name":"regulation of systemic arterial blood pressure by aortic body chemoreceptor signalling","type":"exact"}],"termid":"GO:0003028"}


id: PBO:0034405
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-regulates_process_that_occurs_in","termid":"PBO:0034405"}


id: PBO:0054238
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1620","termid":"PBO:0054238"}


id: PBO:0047203
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 218 member A","termid":"PBO:0047203"}


id: GO:1901132
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of kanamycin.","definition_xrefs":["UniPathway:UPA00965","GOC:yaf","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoglycoside antibiotic catabolic process","termid":"GO:0030649"},{"relation_name":"is_a","term_name":"polyol catabolic process","termid":"GO:0046174"},{"relation_name":"is_a","term_name":"kanamycin metabolic process","termid":"GO:1901131"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"kanamycin catabolic process","synonyms":[{"name":"kanamycin breakdown","type":"exact"},{"name":"kanamycin catabolism","type":"exact"},{"name":"kanamycin degradation","type":"exact"}],"termid":"GO:1901132"}


id: GO:0048463
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that contributes to the act of creating the structural organization of the carpel. This process pertains to the physical shaping of a rudimentary structure.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"floral organ structural organization","termid":"GO:0048450"},{"relation_name":"part_of","term_name":"carpel morphogenesis","termid":"GO:0048445"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"carpel structural organization","secondary_identifiers":["GO:0048432"],"synonyms":[{"name":"carpel structural organisation","type":"exact"}],"termid":"GO:0048463"}


id: MOD:01932
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cross-links two lysine residues with a carbon-nitrogen bond to form L-lysinonorleucine..","definition_xrefs":["PubMed:5879466","PubMed:5117030","PubMed:5817620","RESID:AA0586","PubMed:6030254"],"direct_ancestors":[{"relation_name":"is_a","term_name":"crosslinked residues with loss of ammonia","termid":"MOD:00946"},{"relation_name":"is_a","term_name":"crosslinked L-lysine residue","termid":"MOD:02051"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-lysinonorleucine","synonyms":[{"name":"(2S)-2-amino-6-([(5S)-5-amino-5-carboxypentyl]amino)hexanoic acid","type":"exact"},{"name":"(2S,2'S)-6,6'-iminobis(2-aminohexanoic acid)","type":"exact"},{"name":"6-(N6-L-lysino)-L-norleucine","type":"exact"},{"name":"L-lysinonorleucine","type":"exact"},{"name":"N6-[(5S)-5-amino-5-carboxypentyl]-L-lysine","type":"exact"},{"name":"lysinonorleucine","type":"exact"},{"name":"lysinorleucine [misspelling]","type":"exact"},{"name":"lysylnorleucine","type":"exact"}],"termid":"MOD:01932"}


id: PBO:0047863
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, aphidicolin type, common, fra(2)(p24.2)","termid":"PBO:0047863"}


id: PR:000044703
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A histone H3.3, initiator methionine removed K9-methylated form (Schizosaccharomyces pombe) whose methylation type is monomethylation. Example: UniProtKB:P10651-1, 2-136, Lys-10, MOD:00085.","definition_xrefs":["PRO:DAN","PMID:23849629"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hht3/Me(K9)","termid":"PR:000027604"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H3.3, initiator methionine removed K9-monomethylated form (Schizosaccharomyces pombe)","pombase_gene_id":"SPBC1105.11c","synonyms":[{"name":"Spom-hht3/InitMet-/K9me1","type":"exact"}],"termid":"PR:000044703"}


id: MONDO:0032693
data:
  {"annotated_genes":["SJAG_03986","SJAG_01374"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86432,86433],"is_not":false,"summary":null,"term":"MONDO:0032693"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Galloway-Mowat syndrome","termid":"MONDO:0009627"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01374":null,"SJAG_03986":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025"],"is_obsolete":false,"name":"Galloway-Mowat syndrome 8","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1675829","OMIM:618349","GARD:16345","UMLS:C5193045"],"synonyms":[{"name":"GALLOWAY-MOWAT SYNDROME 8","type":"related"},{"name":"GAMOS8","type":"related"}],"termid":"MONDO:0032693","terms_by_termid":{"MONDO:0032693":null},"xrefs":{"Monarch":{"xref_id":"0032693"}}}


id: MONDO:0001067
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Early yaws includes primary and secondary stages of yaws, endemic tropical treponemal nonvenereal infection: development of initial lesion at inoculation site followed by widespread dissemination of treponemes and generalized secondary granulomatous lesions that may relapse repeatedly.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"yaws","termid":"MONDO:0006019"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"early yaws","secondary_identifiers":["DOID:10568","MEDGEN:124440","UMLS:C0275998","ICD9:102.2","ICD9:102.6","SCTID:23191004","NCIT:C41352","ICD9:102.0"],"synonyms":[{"name":"bone and joint lesions due to yaws","type":"exact"},{"name":"bone and joint yaws lesion","type":"exact"},{"name":"chancre of yaws","type":"exact"},{"name":"frambesia, initial or primary","type":"exact"},{"name":"initial frambesial ulcer","type":"exact"},{"name":"initial lesions of yaws","type":"exact"},{"name":"primary frambesia","type":"exact"}],"termid":"MONDO:0001067","xrefs":{"Monarch":{"xref_id":"0001067"}}}


id: PBO:0035923
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_number_of_Rad52_foci_during_mitotic_S_phase","termid":"PBO:0035923"}


id: GO:0050349
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + triacetate lactone = triacetate.","definition_xrefs":["EC:3.1.1.38","RHEA:22260"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic ester hydrolase activity","termid":"GO:0052689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0016788","GO:0003674"],"is_obsolete":false,"name":"triacetate-lactonase activity","secondary_identifiers":["KEGG_REACTION:R03702","MetaCyc:RXN-20777"],"synonyms":[{"name":"TAL hydrolase activity","type":"related"},{"name":"triacetate lactone hydrolase activity","type":"related"},{"name":"triacetic acid lactone hydrolase activity","type":"related"},{"name":"triacetic lactone hydrolase activity","type":"related"},{"name":"triacetolactone lactonohydrolase activity","type":"related"}],"termid":"GO:0050349"}


id: PR:O74401
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ERO1-like protein beta that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ERO1-like protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC4F6.16c","secondary_identifiers":["UniProtKB:O74401"],"synonyms":[{"name":"SPBC4F6.16c","type":"related"},{"name":"Spom972h-ERO1LB","type":"exact"},{"name":"endoplasmic reticulum oxidoreductin-1-like protein A (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74401"}


id: PBO:0064541
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"POM121 transmembrane nucleoporin like 2","termid":"PBO:0064541"}


id: MOD:01645
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively removes or replaces an L-proline.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-proline residue","termid":"MOD:00915"},{"relation_name":"is_a","term_name":"natural, standard, encoded residue removal","termid":"MOD:01651"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-proline removal","termid":"MOD:01645"}


id: PATO:0002343
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A positional quality inhering in a bearer by virtue of the bearer's lying or growing on the ground but with erect or rising tips.","definition_xrefs":["thefreedictionary:www.thefreedictionary.com"],"direct_ancestors":[{"relation_name":"is_a","term_name":"prostrate","termid":"PATO:0000631"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decumbent","termid":"PATO:0002343"}


id: MONDO:0002182
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disorder characterized by an individual's inability to comprehend or share ideas or feelings because of an impairment in language, speech, or hearing.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"specific developmental disorder","termid":"MONDO:0000592"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"communication disorder","secondary_identifiers":["NCIT:C2958","DOID:2033","MEDGEN:3549","SCTID:278919001","UMLS:C0009460","ICD9:307.9","MESH:D003147"],"synonyms":[{"name":"communicative disorders","type":"exact"}],"termid":"MONDO:0002182","xrefs":{"Monarch":{"xref_id":"0002182"}}}


id: PBO:0091771
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CeNTaurin b5-like gene","termid":"PBO:0091771"}


id: MONDO:0021542
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A hemangioma that involves the optic choroid.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hemangioma","termid":"MONDO:0006500"},{"relation_name":"is_a","term_name":"benign neoplasm of choroid","termid":"MONDO:0021487"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"hemangioma of choroid","secondary_identifiers":["ICD9:228.09","SCTID:255022003","MEDGEN:83424","NCIT:C4562","UMLS:C0346390"],"synonyms":[{"name":"angioma of choroid","type":"exact"},{"name":"angioma of the choroid","type":"exact"},{"name":"benign angioma of choroid","type":"exact"},{"name":"benign angioma of the choroid","type":"exact"},{"name":"benign choroid angioma","type":"exact"},{"name":"benign choroid hemangioma","type":"exact"},{"name":"benign hemangioma of choroid","type":"exact"},{"name":"benign hemangioma of the choroid","type":"exact"},{"name":"choroid angioma","type":"exact"},{"name":"choroid hemangioma","type":"exact"},{"name":"hemangioma of optic choroid","type":"exact"},{"name":"hemangioma of the choroid","type":"exact"},{"name":"hemangioma, choroid, benign","type":"exact"},{"name":"optic choroid hemangioma","type":"exact"}],"termid":"MONDO:0021542","xrefs":{"Monarch":{"xref_id":"0021542"}}}


id: PBO:0075477
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPATA31 subfamily A member 5","termid":"PBO:0075477"}


id: PBO:0044649
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynactin subunit 1","termid":"PBO:0044649"}


id: GO:0140048
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of manganese ions from inside of a cell, across the plasma membrane and into the extracellular region.","definition_xrefs":["PMID:25319704"],"direct_ancestors":[{"relation_name":"is_a","term_name":"manganese ion transmembrane transport","termid":"GO:0071421"},{"relation_name":"is_a","term_name":"export across plasma membrane","termid":"GO:0140115"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"manganese ion export across plasma membrane","synonyms":[{"name":"manganese ion export from cell","type":"exact"}],"termid":"GO:0140048"}


id: FYPO:0004663
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which a normal proportion of cells in the population remains viable after exposure to methyl methanesulfonate.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal phenotype","termid":"FYPO:0000257"},{"relation_name":"is_a","term_name":"cell population viability","termid":"FYPO:0002057"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0002057","FYPO:0000003","FYPO:0000257"],"is_obsolete":false,"name":"normal viability following cellular response to methyl methanesulfonate","synonyms":[{"name":"normal cell population viability following cellular response to methyl methanesulfonate","type":"exact"},{"name":"normal viability following MMS exposure","type":"exact"},{"name":"normal viability following cellular response to MMS","type":"exact"},{"name":"normal viability following cellular response to methyl methanesulphonate","type":"exact"}],"termid":"FYPO:0004663"}


id: PBO:0063531
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PDZK1 interacting protein 1","termid":"PBO:0063531"}


id: GO:1901635
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of maintenance of presynaptic active zone structure.","definition_xrefs":["PMID:22426000","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of maintenance of presynaptic active zone structure (obsolete GO:1901635)","synonyms":[{"name":"regulation of maintenance of presynaptic active zone structure","type":"exact"}],"termid":"GO:1901635"}


id: PR:000085737
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DNA-directed RNA polymerase II subunit rpb1 CTD-phosphorylated form (Schizosaccharomyces pombe) that has been post-translationally modified to include phosphoserine at the fifth and seventh positions of one or more of the C-terminal heptad repeats (YSPTSPS).","definition_xrefs":["PomBase:VW","PRO:DAN","PMID:26264592"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rpb1/Phos(CTD-S2,S5,S7)","termid":"PR:000050494"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rpb1/Phos(CTD-S5,S7)","pombase_gene_id":"SPBC28F2.12","synonyms":[{"name":"PomBase_original_PRO_term_name: DNA-directed RNA polymerase II subunit rpb1 phosphorylated 4 (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-rpb1/Phos:4","type":"exact"},{"name":"rpb1/Phos(CTD-S5,S7)","type":"exact"}],"termid":"PR:000085737"}


id: GO:0033688
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of osteoblast proliferation.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell population proliferation","termid":"GO:0042127"},{"relation_name":"regulates","term_name":"osteoblast proliferation","termid":"GO:0033687"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of osteoblast proliferation","termid":"GO:0033688"}


id: FYPO:0006326
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the medial cortical nodes is decreased in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to medial cortex during vegetative growth","termid":"FYPO:0002557"},{"relation_name":"is_a","term_name":"abnormal protein localization to medial cortical node","termid":"FYPO:0003289"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased protein localization to medial cortical node","synonyms":[{"name":"decreased protein localisation to medial cortical node","type":"exact"},{"name":"decreased protein localization to cytokinetic nodes","type":"related"},{"name":"decreased protein localization to medial cortical node during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to medial cortical node during vegetative growth","type":"exact"},{"name":"decreased protein recruitment to medial cortical node","type":"related"},{"name":"reduced protein localization to medial cortical node","type":"exact"}],"termid":"FYPO:0006326"}


id: MONDO:0014502
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Mendelian susceptibility to mycobacterial diseases (MSMD) due to complete ISG15 deficiency is a genetic variant of MSMD characterized by Bacille Calmette-GuC)rin (BCG) infections.","definition_xrefs":["Orphanet:319563"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete type 1 interferonopathy (obsolete MONDO:0018782)","termid":"MONDO:0018782"},{"relation_name":"is_a","term_name":"inherited susceptibility to mycobacterial diseases","termid":"MONDO:0019146"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency","secondary_identifiers":["DOID:0111934","UMLS:C4015293","MEDGEN:863730","OMIM:616126"],"synonyms":[{"name":"IMD38","type":"related"},{"name":"ISG15 autosomal recessive mendelian susceptibility to mycobacterial diseases due to a complete deficiency","type":"exact"},{"name":"ISG15 deficiency, autosomal recessive","type":"related"},{"name":"MSMD due to complete ISG15 deficiency","type":"exact"},{"name":"autosomal recessive mendelian susceptibility to mycobacterial diseases due to a complete deficiency caused by mutation in ISG15","type":"exact"},{"name":"immunodeficiency 38","type":"exact"},{"name":"immunodeficiency 38 with basal ganglia calcification","type":"related"},{"name":"immunodeficiency 38, Mycobacteriosis, autosomal recessive","type":"related"}],"termid":"MONDO:0014502","xrefs":{"Monarch":{"xref_id":"0014502"}}}


id: MONDO:0018806
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"biliary tract disorder","termid":"MONDO:0004868"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0002515"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0002515"],"is_obsolete":false,"name":"primary intrahepatic lithiasis","secondary_identifiers":["GARD:21974","MEDGEN:1814175","UMLS:C5576557","Orphanet:480506"],"synonyms":[{"name":"PIHL","type":"exact"},{"name":"primary hepatolithiasis","type":"exact"}],"termid":"MONDO:0018806","xrefs":{"Monarch":{"xref_id":"0018806"}}}


id: PBO:0070068
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6atac small nuclear 25, pseudogene","termid":"PBO:0070068"}


id: GO:0019538
data:
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id: PBO:0048454
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GRIP and coiled-coil domain containing 1","termid":"PBO:0048454"}


id: PBO:0054646
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2051","termid":"PBO:0054646"}


id: PBO:0054782
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2195","termid":"PBO:0054782"}


id: PBO:0057474
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 592","termid":"PBO:0057474"}


id: MOD:01946
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that forms (2-aminosuccinimidyl)pentanedioicacid by crosslinking either an aspartic acid residue or an asparagine residue with the following glutamic acid\\n residue.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2-aminosuccinimide ring crosslinked residues","termid":"MOD:01944"},{"relation_name":"is_a","term_name":"crosslinked L-glutamic acid residue","termid":"MOD:02045"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2-(2-aminosuccinimidyl)pentanedioic acid","termid":"MOD:01946"}


id: SO:0001950
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A kind of histone modification site, whereby the 4th residue (a lysine), from the start of the H4 protein is tri-methylated.","definition_xrefs":["EBI:nj"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone_methylation_site","termid":"SO:0001701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"H4K4_trimethylation_site","synonyms":[{"name":" H4K4me3","type":"exact"},{"name":"H4K4 trimethylation site","type":"exact"}],"termid":"SO:0001950"}


id: PBO:0030692
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cellular_glutathione_disulfide_level","termid":"PBO:0030692"}


id: PR:P87126
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cwf2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P87126"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre-mRNA-splicing factor cwf2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3A12.11c","synonyms":[{"name":"Spom972h-cwf2","type":"exact"},{"name":"complexed with cdc5 protein 2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"pre-mRNA-processing protein 3 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P87126"}


id: PBO:0038366
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_component_process","termid":"PBO:0038366"}


id: PATO:0000187
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A relational quality of occurrent inhering in a bearer by virtue of the bearer's ability to consume a resource.","definition_xrefs":["PATOC:GVG"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000187 consumption quality (obsolete PATO:0000187)","synonyms":[{"name":"propensity to consume","type":"related"}],"termid":"PATO:0000187"}


id: PR:Q8TFF8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBPB8B6.05c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q8TFF8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-asparaginase 4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBPB8B6.05c","synonyms":[{"name":"L-asparagine amidohydrolase 4 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-SPBPB8B6.05c","type":"exact"}],"termid":"PR:Q8TFF8"}


id: GO:0050889
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The determination of the perceived strength of a sensory stimulus.","definition_xrefs":["ISBN:0721619908"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensory processing","termid":"GO:0050893"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"determination of stimulus intensity","termid":"GO:0050889"}


id: SO:0001726
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is di-methylated.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"H3K27_methylation_site","termid":"SO:0001732"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"H3K27_dimethylation_site","synonyms":[{"name":"H3K27 di-methylation site","type":"exact"},{"name":"H3K27Me2","type":"related"}],"termid":"SO:0001726"}


id: GO:0021710
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which neuroblasts acquire specialized structural and/or functional features that characterize the mature cerebellar stellate cell. Differentiation includes the processes involved in commitment of a neuroblast to a cerebellar stellate cell fate. A cerebellar stellate cell is an inhibitory GABAergic interneuron found in the cerebellar cortex.","definition_xrefs":["GOC:dgh","GOC:cls","GO_REF:0000021","PMID:15157725","GOC:jid","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation in hindbrain","termid":"GO:0021533"},{"relation_name":"is_a","term_name":"central nervous system neuron differentiation","termid":"GO:0021953"},{"relation_name":"part_of","term_name":"cerebellar molecular layer formation","termid":"GO:0021688"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cerebellar stellate cell differentiation","termid":"GO:0021710"}


id: PBO:0070560
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 26","termid":"PBO:0070560"}


id: PBO:0063208
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PCBP2 pseudogene 4","termid":"PBO:0063208"}


id: MONDO:0035018
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare syndromic frontonasal dysplasia characterized by distinctive facial dysmorphic features including hypertelorism, almond-shaped palpebral fissures, nasal deformity with creased ridge, depressed or absent tip, and asymmetry and partial absence of nasal bones, and downturned corners of the mouth. Additional reported manifestations are limb anomalies (e. g. Poland anomaly, transverse limb agenesis, and anomalies of the hands and feet, such as camptodactyly, oligodactyly, clinodactyly, and syndactyly), frontonasal encephalocele, choanal atresia, congenital renal/cardiac malformations, and corpus callosum agenesis.","definition_xrefs":["Orphanet:521308"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"frontonasal dysplasia-bifid nose-upper limb anomalies syndrome","secondary_identifiers":["UMLS:C5567892","GARD:22142","MEDGEN:1799315"],"termid":"MONDO:0035018","xrefs":{"Monarch":{"xref_id":"0035018"}}}


id: GO:0034568
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: isoproturon + H2O = formaldehyde + monodemethylisoproturon + 2 H+ + 2 e-.","definition_xrefs":["UM-BBD_reactionID:r0892"],"gene_count":0,"genotype_count":0,"name":"obsolete isoproturon dimethylaminedehydrogenase activity (obsolete GO:0034568)","termid":"GO:0034568"}


id: PBO:0084310
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Isocitrate lyase; catalyzes the formation of succinate and glyoxylate from isocitrate, a key reaction of the glyoxylate cycle; expression of ICL1 is induced by growth on ethanol and repressed by growth on glucose","termid":"PBO:0084310"}


id: PBO:0056801
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane frizzled-related protein","termid":"PBO:0056801"}


id: PBO:0061634
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nudix hydrolase 15 pseudogene 2","termid":"PBO:0061634"}


id: GO:0044476
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which an organism inhibits or disrupts the activity of a low voltage-gated calcium channel in another organism via the action of a venom.","definition_xrefs":["GOC:fj","PMID:20920515","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"venom-mediated inhibition of voltage-gated calcium channel activity","termid":"GO:0044474"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"venom-mediated inhibition of low voltage-gated calcium channel activity","synonyms":[{"name":"envenomation resulting in negative regulation of low voltage-gated calcium channel activity in another organism","type":"exact"},{"name":"envenomation resulting in negative regulation of low voltage-gated calcium channel activity in other organism","type":"exact"}],"termid":"GO:0044476"}


id: GO:0043761
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: CDP-digeranylgeranylglycerol + L-serine = archaetidylserine + CMP.","definition_xrefs":["PMID:12562787"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, for other substituted phosphate groups","termid":"GO:0016780"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016780"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016780","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"archaetidylserine synthase activity","secondary_identifiers":["EC:2.7.8.38"],"synonyms":[{"name":"CDP-2,3-di-O-geranylgeranyl-sn-glycerol inositol 1-archaetidyltransferase activity","type":"exact"},{"name":"CDP-2,3-di-O-geranylgeranyl-sn-glycerol:l-serine O-archaetidyltransferase activity","type":"exact"}],"termid":"GO:0043761"}


id: MONDO:0017898
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Autosomal recessive form of mendelian susceptibility to mycobacterial diseases due to a partial deficiency.","definition_xrefs":["MONDO:patterns/autosomal_recessive"],"gene_count":0,"genotype_count":0,"name":"obsolete autosomal recessive mendelian susceptibility to mycobacterial diseases due to a partial deficiency (obsolete MONDO:0017898)","secondary_identifiers":["Orphanet:319539"],"synonyms":[{"name":"autosomal recessive MSMD due to a partial deficiency","type":"exact"},{"name":"mendelian susceptibility to mycobacterial diseases due to a partial deficiency, autosomal recessive","type":"exact"}],"termid":"MONDO:0017898","xrefs":{"Monarch":{"xref_id":"0017898"}}}


id: PBO:0066134
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribonucleoprotein, PTB binding 1","termid":"PBO:0066134"}


id: MONDO:0032783
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any aortic valve disease characterized by aortic stenosis and/or bicuspid aortic valve in which the cause of the disease is a mutation in the ROBO4 gene.","definition_xrefs":["OMIM:618496"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial bicuspid aortic valve","termid":"MONDO:0007194"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"aortic valve disease 3","secondary_identifiers":["DOID:0080977","UMLS:C5193127","MEDGEN:1681142"],"synonyms":[{"name":"AORTIC VALVE DISEASE 3","type":"related"},{"name":"AOVD3","type":"related"}],"termid":"MONDO:0032783","xrefs":{"Monarch":{"xref_id":"0032783"}}}


id: PBO:0034770
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDP-diacylglycerol-glycerol-3-phosphate3-phosphatidyltransferase Pgs1","termid":"PBO:0034770"}


id: PBO:0001189
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARID domain","termid":"PBO:0001189"}


id: GO:2000690
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cardiac muscle cell myoblast differentiation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of myoblast differentiation","termid":"GO:0045661"},{"relation_name":"is_a","term_name":"regulation of cardioblast differentiation","termid":"GO:0051890"},{"relation_name":"regulates","term_name":"cardiac muscle cell myoblast differentiation","termid":"GO:0060379"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cardiac muscle cell myoblast differentiation","synonyms":[{"name":"regulation of cardiac myoblast differentiation","type":"related"},{"name":"regulation of myocardial precursor cell differentiation","type":"exact"}],"termid":"GO:2000690"}


id: GO:1990384
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process in which the hyaloid vascular plexus is destroyed as a part of its normal progression.","definition_xrefs":["PMID:18841878","GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure regression","termid":"GO:0060033"},{"relation_name":"part_of","term_name":"camera-type eye development","termid":"GO:0043010"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hyaloid vascular plexus regression","termid":"GO:1990384"}


id: PBO:0049257
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G0/G1 switch 2","termid":"PBO:0049257"}


id: MONDO:0017160
data:
  {"annotated_genes":["SJAG_04489"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85678],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010936"}]},"cv_name":"mondo","definition":"Behavioral variant of frontotemporal dementia (bv-FTD) is a form of frontotemporal dementia (FTD), characterized by progressive behavioral impairment and a decline in executive function with frontal lobe-predominant atrophy.","definition_xrefs":["Orphanet:275864"],"direct_ancestors":[{"relation_name":"is_a","term_name":"movement disorder","termid":"MONDO:0005395"},{"relation_name":"is_a","term_name":"frontotemporal dementia","termid":"MONDO:0017276"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04489":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0002039"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0002039"],"is_obsolete":false,"name":"behavioral variant of frontotemporal dementia","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:860225","SCTID:716994006","UMLS:C4011788","GARD:7392","NANDO:1200549"],"synonyms":[{"name":"bv-FTD","type":"exact"}],"termid":"MONDO:0017160","terms_by_termid":{"MONDO:0010936":null},"xrefs":{"Monarch":{"xref_id":"0017160"}}}


id: PBO:0030048
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_ferric_iron_import","termid":"PBO:0030048"}


id: PBO:0013788
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae TPS1","termid":"PBO:0013788"}


id: PBO:0013471
data:
  {"annotation_feature_type":"gene","cv_name":"species_dist","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"no apparent S. cerevisiaie ortholog","termid":"PBO:0013471"}


id: GO:0010638
data:
  {"annotated_genes":["SJAG_03957","SJAG_02342","SJAG_04776","SJAG_02498","SJAG_03624","SJAG_04597","SJAG_00823","SJAG_02336","SJAG_00666","SJAG_03631","SJAG_03353","SJAG_03126","SJAG_03048","SJAG_00142","SJAG_03137","SJAG_00718","SJAG_03851","SJAG_00266","SJAG_04573","SJAG_01805","SJAG_02332","SJAG_03438","SJAG_04968","SJAG_02592","SJAG_03681","SJAG_04312","SJAG_00082","SJAG_04259","SJAG_02169","SJAG_01212","SJAG_03936","SJAG_02433","SJAG_02380","SJAG_05289","SJAG_00883","SJAG_01297","SJAG_02990","SJAG_01837","SJAG_03581","SJAG_02451","SJAG_03812","SJAG_01679"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[108281],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010846"},{"annotations":[91062,114572,104210,114085,99914,107546,108567,112267,116200],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902426"},{"annotations":[94537],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140499"},{"annotations":[108969,108879],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000786"},{"annotations":[97951],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1901098"},{"annotations":[64749],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903373"},{"annotations":[99289],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031453"},{"annotations":[102692,89990,116972],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905561"},{"annotations":[102169],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031117"},{"annotations":[96079],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090297"},{"annotations":[109194],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090141"},{"annotations":[94748,90339],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903501"},{"annotations":[113669,94749,87876,94917,110834],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903473"},{"annotations":[102696,116974],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903380"},{"annotations":[100463,115071,102426,98025,94145,102697,111683],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045842"},{"annotations":[94750,90342],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902846"},{"annotations":[111744],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0110161"},{"annotations":[91524],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090053"},{"annotations":[89402],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010845"},{"annotations":[94710,91525,110656],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090055"},{"annotations":[107720],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045876"},{"annotations":[97515],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032215"},{"annotations":[97952,110578],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061191"}]},"cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of an organelle.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of organelle organization","termid":"GO:0033043"},{"relation_name":"is_a","term_name":"positive regulation of cellular component organization","termid":"GO:0051130"},{"relation_name":"positively_regulates","term_name":"organelle organization","termid":"GO:0006996"}],"gene_count":42,"genes_by_uniquename":{"SJAG_00082":null,"SJAG_00142":null,"SJAG_00266":null,"SJAG_00666":null,"SJAG_00718":null,"SJAG_00823":null,"SJAG_00883":null,"SJAG_01212":null,"SJAG_01297":null,"SJAG_01679":null,"SJAG_01805":null,"SJAG_01837":null,"SJAG_02169":null,"SJAG_02332":null,"SJAG_02336":null,"SJAG_02342":null,"SJAG_02380":null,"SJAG_02433":null,"SJAG_02451":null,"SJAG_02498":null,"SJAG_02592":null,"SJAG_02990":null,"SJAG_03048":null,"SJAG_03126":null,"SJAG_03137":null,"SJAG_03353":null,"SJAG_03438":null,"SJAG_03581":null,"SJAG_03624":null,"SJAG_03631":null,"SJAG_03681":null,"SJAG_03812":null,"SJAG_03851":null,"SJAG_03936":null,"SJAG_03957":null,"SJAG_04259":null,"SJAG_04312":null,"SJAG_04573":null,"SJAG_04597":null,"SJAG_04776":null,"SJAG_04968":null,"SJAG_05289":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of organelle organization","references_by_uniquename":{"GO_REF:0000104":null,"GO_REF:0000107":null},"synonyms":[{"name":"positive regulation of organelle organisation","type":"exact"},{"name":"positive regulation of organelle organization and biogenesis","type":"related"}],"termid":"GO:0010638","terms_by_termid":{"GO:0010845":null,"GO:0010846":null,"GO:0031117":null,"GO:0031453":null,"GO:0032215":null,"GO:0045842":null,"GO:0045876":null,"GO:0061191":null,"GO:0090053":null,"GO:0090055":null,"GO:0090141":null,"GO:0090297":null,"GO:0110161":null,"GO:0140499":null,"GO:1901098":null,"GO:1902426":null,"GO:1902846":null,"GO:1903373":null,"GO:1903380":null,"GO:1903473":null,"GO:1903501":null,"GO:1905561":null,"GO:2000786":null}}


id: PATO:0000264
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000264 absolute visual_ability (obsolete PATO:0000264)","termid":"PATO:0000264"}


id: PBO:0080636
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat domain 83 opposite strand","termid":"PBO:0080636"}


id: GO:2000651
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of sodium ion transmembrane transporter activity.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of ion transmembrane transporter activity","termid":"GO:0032414"},{"relation_name":"is_a","term_name":"positive regulation of sodium ion transmembrane transport","termid":"GO:1902307"},{"relation_name":"is_a","term_name":"regulation of sodium ion transmembrane transporter activity","termid":"GO:2000649"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"positive regulation of sodium ion transmembrane transporter activity","synonyms":[{"name":"positive regulation of sodium transporter activity","type":"exact"}],"termid":"GO:2000651"}


id: PBO:0081062
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger CCHC-type and RNA binding motif containing 1","termid":"PBO:0081062"}


id: PBO:0035764
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_heterochromatin_assembly_at_centromere_outer_repeat_during_vegetative_growth","termid":"PBO:0035764"}


id: GO:0047507
data:
  {"annotated_genes":["SJAG_04657"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71363],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004798"},{"annotations":[118329],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0120136"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a 2'-deoxyribonucleoside 5'-phosphate + ATP = a 2'-deoxyribonucleoside 5'-diphosphate + ADP.","definition_xrefs":["RHEA:11216"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, phosphate group as acceptor","termid":"GO:0016776"},{"relation_name":"is_a","term_name":"nucleobase-containing compound kinase activity","termid":"GO:0019205"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04657":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0003824","GO:0016301"],"is_obsolete":false,"name":"deoxynucleoside-phosphate kinase activity, ATP as phosphate donor","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:DEOXYNUCLEOSIDE-PHOSPHATE-KINASE-RXN","EC:2.7.4.13"],"synonyms":[{"name":"ATP:deoxynucleoside-phosphate phosphotransferase activity","type":"related"},{"name":"deoxynucleoside monophosphate kinase activity","type":"related"},{"name":"deoxynucleoside-5'-monophosphate kinase activity","type":"related"},{"name":"deoxynucleoside-phosphate kinase activity","type":"broad"},{"name":"deoxyribonucleoside monophosphokinase activity","type":"related"}],"termid":"GO:0047507","terms_by_termid":{"GO:0004798":null,"GO:0120136":null}}


id: MONDO:1012985
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autoimmune disease that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune system disorder, non-human animal","termid":"MONDO:0700106"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autoimmune disease, non-human animal","termid":"MONDO:1012985","xrefs":{"Monarch":{"xref_id":"1012985"}}}


id: FYPO:0005362
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which chromosome recapture is abnormal during metaphase of mitosis. Chromosome recapture is the reattachment of chromosomes which have become detached from the spindle.","definition_xrefs":["PomBase:mah","GO:1990942","PMID:18256284"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic chromosome congression","termid":"FYPO:0000030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"part_of","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000641","FYPO:0005447","FYPO:0001985","FYPO:0000337","FYPO:0001320","FYPO:0000631","FYPO:0000138"],"is_obsolete":false,"name":"abnormal mitotic metaphase chromosome recapture","synonyms":[{"name":"abnormal chromosome recapture during mitotic metaphase","type":"exact"},{"name":"abnormal kinetochore retrieval in mitotic metaphase","type":"exact"},{"name":"abnormal mitotic kinetochore retrieval","type":"exact"},{"name":"abnormal mitotic metaphase chromosome recapture during vegetative growth","type":"exact"},{"name":"abnormal mitotic metaphase chromosome retrieval to the spindle pole body","type":"exact"},{"name":"abnormal mitotic sister kinetochore recapture","type":"exact"}],"termid":"FYPO:0005362"}


id: PBO:0073502
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SH2B adaptor protein 1","termid":"PBO:0073502"}


id: RO:HOM0000013
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Syntenic homology that involves chromosomes of different species.","direct_ancestors":[{"relation_name":"is_a","term_name":"in_syntenic_homology_relationship_with","termid":"RO:HOM0000010"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"in_syntenic_orthology_relationship_with","synonyms":[{"name":"syntenic orthologous to","type":"exact"}],"termid":"RO:HOM0000013"}


id: GO:0047460
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-2-amino-4-chloropent-4-enoate + H2O = 2-oxopent-4-enoate + chloride + H+ + NH4.","definition_xrefs":["RHEA:11620","EC:4.5.1.4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-halide lyase activity","termid":"GO:0016848"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"L-2-amino-4-chloropent-4-enoate dehydrochlorinase activity","secondary_identifiers":["KEGG_REACTION:R02605","MetaCyc:4.5.1.4-RXN"],"synonyms":[{"name":"L-2-amino-4-chloro-4-pentenoate dehalogenase activity","type":"related"},{"name":"L-2-amino-4-chloropent-4-enoate chloride-lyase (adding H2O; deaminating; 2-oxopent-4-enoate-forming)","type":"related"},{"name":"L-2-amino-4-chloropent-4-enoate chloride-lyase (deaminating)","type":"related"}],"termid":"GO:0047460"}


id: MONDO:0009569
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hennekam-Beemer syndrome is characterized by the association of skin mastocytosis (appearing as diffuse pigmentation), short stature, microcephaly, conductive hearing loss, and dysmorphic features. It has been described in only two (female) cases: one with normal mental development born to consanguineous parents and the other with severe psychomotor retardation born to unrelated parents. The mode of inheritance is most likely autosomal recessive.","definition_xrefs":["Orphanet:2135"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-variable intellectual disability syndrome","termid":"MONDO:0015160"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hennekam-Beemer syndrome","secondary_identifiers":["ICD10CM:Q82.2","MEDGEN:462843","OMIM:248910","MESH:C536033","SCTID:722453009","UMLS:C3151493","GARD:3409"],"synonyms":[{"name":"Hennekam Beemer syndrome","type":"related"},{"name":"cutaneous mastocytosis, conductive hearing loss and microtia","type":"related"},{"name":"mastocytosis cutaneous with short stature conductive hearing loss and microtia","type":"related"},{"name":"mastocytosis-short stature-hearing loss syndrome","type":"exact"},{"name":"skin mastocytosis hearing loss microcephaly mild dysmorphic features and severe intellectual disability","type":"related"},{"name":"skin mastocytosis hearing loss microcephaly mild dysmorphic features and severe mental retardation","type":"related"}],"termid":"MONDO:0009569","xrefs":{"Monarch":{"xref_id":"0009569"}}}


id: PR:Q09811
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rqh1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09811"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent DNA helicase hus2/rqh1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2G11.12","synonyms":[{"name":"Spom972h-rqh1","type":"exact"}],"termid":"PR:Q09811"}


id: MONDO:0016099
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Overlap myositis (OM) is a form of idiopathic inflammatory myopathy (IIM) characterized by myositis with at least one clinical and/or autoantibody overlap feature.","definition_xrefs":["Orphanet:206572"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acquired idiopathic inflammatory myopathy","termid":"MONDO:0020122"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005336"],"is_obsolete":false,"name":"overlap myositis","secondary_identifiers":["GARD:20352","MEDGEN:1814440","UMLS:C5679784"],"synonyms":[{"name":"adult-onset overlap myositis","type":"exact"},{"name":"non-specific myositis","type":"exact"}],"termid":"MONDO:0016099","xrefs":{"Monarch":{"xref_id":"0016099"}}}


id: PBO:0083069
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dihydrouridine synthase; member of a widespread family of conserved proteins including Smm1p, Dus1p, and Dus4p; contains a consensus oleate response element (ORE) in its promoter region; forms nuclear foci upon DNA replication stress","termid":"PBO:0083069"}


id: GO:0100045
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates arginine catabolic process.","definition_xrefs":["GOC:cjm","GOC:obol"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of arginine catabolic process by transcription from RNA polymerase II promoter (obsolete GO:0100045)","termid":"GO:0100045"}


id: SO:0000752
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region that is involved in the regulation of transcription of a group of regulated genes.","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000752 gene_group_regulatory_region (obsolete SO:0000752)","synonyms":[{"name":"gene group regulatory region","type":"exact"}],"termid":"SO:0000752"}


id: PBO:0043773
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COX20 pseudogene 2","termid":"PBO:0043773"}


id: PBO:0073848
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 9 member A3","termid":"PBO:0073848"}


id: PBO:0065679
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidyl-tRNA hydrolase 1 homolog","termid":"PBO:0065679"}


id: GO:0001695
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of histamine, a physiologically active amine, found in plant and animal tissue and released from mast cells as part of an allergic reaction in humans.","definition_xrefs":["GOC:jl","ISBN:0395825172"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histamine metabolic process","termid":"GO:0001692"},{"relation_name":"is_a","term_name":"biogenic amine catabolic process","termid":"GO:0042402"},{"relation_name":"is_a","term_name":"imidazole-containing compound catabolic process","termid":"GO:0052805"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"histamine catabolic process","synonyms":[{"name":"histamine breakdown","type":"exact"},{"name":"histamine catabolism","type":"exact"},{"name":"histamine degradation","type":"exact"}],"termid":"GO:0001695"}


id: PBO:0091256
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Suppressor of cut TWenty","termid":"PBO:0091256"}


id: GO:1990071
data:
  {"annotated_genes":["SJAG_02525","SJAG_03467","SJAG_01415","SJAG_04021","SJAG_04618","SJAG_02655","SJAG_04837","SJAG_02750","SJAG_03663","SJAG_04358"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[71912,75423,89002,89686,97633,99427,100085,102844,103689,110132],"is_not":false,"summary":null,"term":"GO:1990071"}]},"cv_name":"cellular_component","definition":"A complex that mediates intra-Golgi traffic, Golgi exit, endosome-to-Golgi traffic, and the trafficking of autophagy proteins from Golgi to the phagophore assembly site. Binds to a component of the COPI coat. In yeast it includes the following subunits: Bet3 (as homodimer), Bet5, Tca17, Trs20, Trs23, Trs31, Trs33, Trs65, Trs120, Trs130. The whole complex is thought to dimerize with itself.","definition_xrefs":["PMID:20375281","PMID:22669257","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"TRAPP complex","termid":"GO:0030008"},{"relation_name":"part_of","term_name":"endosome","termid":"GO:0005768"},{"relation_name":"part_of","term_name":"Golgi apparatus","termid":"GO:0005794"}],"gene_count":10,"genes_by_uniquename":{"SJAG_01415":null,"SJAG_02525":null,"SJAG_02655":null,"SJAG_02750":null,"SJAG_03467":null,"SJAG_03663":null,"SJAG_04021":null,"SJAG_04358":null,"SJAG_04618":null,"SJAG_04837":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005768"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005794"},{"rel_name":"part_of","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0031410","GO:0005737","GO:0005794","GO:0005768","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"TRAPPII protein complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:1990071","terms_by_termid":{"GO:1990071":null}}


id: GO:1904342
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of colon smooth muscle contraction.","definition_xrefs":["GOC:TermGenie","PMID:24170253","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of gastro-intestinal system smooth muscle contraction","termid":"GO:1904305"},{"relation_name":"is_a","term_name":"regulation of colon smooth muscle contraction","termid":"GO:1904341"},{"relation_name":"negatively_regulates","term_name":"colon smooth muscle contraction","termid":"GO:1990765"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of colon smooth muscle contraction","synonyms":[{"name":"down regulation of colon smooth muscle contraction","type":"exact"},{"name":"down-regulation of colon smooth muscle contraction","type":"exact"},{"name":"downregulation of colon smooth muscle contraction","type":"exact"},{"name":"inhibition of colon smooth muscle contraction","type":"narrow"}],"termid":"GO:1904342"}


id: PBO:0071689
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L37 pseudogene 21","termid":"PBO:0071689"}


id: PBO:0086297
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein with a role in snRNA and snoRNA cap trimethylation; interacts with Tgs1p and shows similar phenotypes; required for trimethylation of the caps of spliceosomal snRNAs and the U3 snoRNA, and for efficient 3' end processing of U3 snoRNA; may act as a specificity factor for Tgs1p","termid":"PBO:0086297"}


id: PBO:0087379
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sterol-binding protein; has a probable role in retrograde transport of sterols from the plasma membrane to the ER; contains two StART-like domains that bind sterols and a GRAM domain; co-localizes to puncta in the cortical ER with Sip3p; one of six StART-like domain-containing proteins in yeast that may be involved in sterol transfer between intracellular membranes; conserved across eukaryotes","termid":"PBO:0087379"}


id: GO:0046415
data:
  {"annotated_genes":["SJAG_04299"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73859],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019628"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving urate, the anion of uric acid, 2,6,8-trioxypurine, the end product of purine metabolism in certain mammals and the main excretory product in uricotelic animals.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"small molecule metabolic process","termid":"GO:0044281"},{"relation_name":"is_a","term_name":"purine-containing compound metabolic process","termid":"GO:0072521"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04299":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"urate metabolic process","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"urate metabolism","type":"exact"}],"termid":"GO:0046415","terms_by_termid":{"GO:0019628":null}}


id: FYPO:0005339
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the nucleus is increased during a cellular response to hydroxyurea.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein localization to nucleus during vegetative growth","termid":"FYPO:0001130"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0000138","FYPO:0001985"],"is_obsolete":false,"name":"increased protein localization to nucleus during cellular response to hydroxyurea","synonyms":[{"name":"increased protein localisation to nucleus during cellular response to hydroxyurea","type":"exact"},{"name":"increased protein localization to nucleus during cellular response to HU","type":"exact"},{"name":"increased protein localization to nucleus during cellular response to hydroxyurea during mitotic cell cycle","type":"related"},{"name":"increased protein localization to nucleus during cellular response to hydroxyurea during vegetative growth","type":"exact"}],"termid":"FYPO:0005339"}


id: PR:O74835
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein RRP5 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04382","PANTHER:PTHR23270:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rRNA biogenesis protein rrp5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1183.07","secondary_identifiers":["UniProtKB:O74835"],"synonyms":[{"name":"Spom972h-PDCD11","type":"exact"},{"name":"U3 small nucleolar RNA-associated protein rrp5 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"U3 snoRNA-associated protein rrp5 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ribosomal RNA-processing protein 5 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74835"}


id: PBO:0058208
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIR4500 host gene","termid":"PBO:0058208"}


id: PR:O94672
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sec2302 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94672"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein transport protein sec23-2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC776.04","synonyms":[{"name":"Spom972h-sec2302","type":"exact"}],"termid":"PR:O94672"}


id: FYPO:0007397
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of heme into the cell is abolished.","definition_xrefs":["GO:0140420","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular process during vegetative growth","termid":"FYPO:0001362"},{"relation_name":"is_a","term_name":"abnormal transport","termid":"FYPO:0001720"},{"relation_name":"is_a","term_name":"abolished biological process","termid":"FYPO:0005448"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"abolished heme import","synonyms":[{"name":"abolished haem import","type":"exact"},{"name":"abolished heme import during mitotic cell cycle","type":"related"},{"name":"abolished heme import during vegetative growth","type":"exact"},{"name":"abolished heme import into cell","type":"exact"},{"name":"heme import abolished during vegetative growth","type":"exact"}],"termid":"FYPO:0007397"}


id: GO:0047950
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 glutathione + O2 = glutathione disulfide + H2O2.","definition_xrefs":["EC:1.8.3.3","RHEA:24112"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor","termid":"GO:0016670"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"glutathione oxidase activity","secondary_identifiers":["MetaCyc:GLUTATHIONE-OXIDASE-RXN","KEGG_REACTION:R00120"],"synonyms":[{"name":"glutathione:oxygen oxidoreductase activity","type":"related"}],"termid":"GO:0047950"}


id: MONDO:0004845
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A recurrent disease of the oral mucosa of unknown etiology. It is characterized by small white ulcerative lesions, single or multiple, round or oval, lasting for 7-14 days and healing without scarring.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"canker sore","termid":"MONDO:0005318"},{"relation_name":"is_a","term_name":"stomatitis","termid":"MONDO:0004842"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aphthous stomatitis","secondary_identifiers":["MEDGEN:20959","ICD9:528.2","DOID:9663","UMLS:C0038363"],"synonyms":[{"name":"aphtha","type":"exact"},{"name":"aphthous ulceration","type":"exact"},{"name":"canker sore","type":"related"},{"name":"oral aphthae","type":"exact"},{"name":"oral aphthous ulcer","type":"related"},{"name":"oral ulcer","type":"exact"}],"termid":"MONDO:0004845","xrefs":{"Monarch":{"xref_id":"0004845"}}}


id: PBO:0064420
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"partner of NOB1 homolog","termid":"PBO:0064420"}


id: MONDO:0020665
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"cancer","termid":"MONDO:0004992"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"high grade malignant neoplasm","secondary_identifiers":["MEDGEN:234350","UMLS:C1334017","NCIT:C36046"],"synonyms":[{"name":"high grade malignant neoplasm","type":"exact"}],"termid":"MONDO:0020665","xrefs":{"Monarch":{"xref_id":"0020665"}}}


id: FYPO:0007871
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the lateral cortex of a cell is decreased, and some of the protein is detected distributed throughout the cell cortex. There may be little or no protein detected at the medial cortex.","definition_xrefs":["PMID:34533984","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to cell cortex during vegetative growth","termid":"FYPO:0000928"},{"relation_name":"is_a","term_name":"abnormal protein localization to lateral cell cortex","termid":"FYPO:0007869"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"decreased protein localization to lateral cell cortex, with protein distributed in cell cortex, during vegetative growth","synonyms":[{"name":"decreased protein localisation to lateral cell cortex, with protein distributed in cell cortex, during vegetative growth","type":"exact"},{"name":"decreased protein localization to cell side, with protein distributed in cell cortex, during vegetative growth","type":"related"},{"name":"decreased protein localization to lateral cell cortex, with protein distributed in cell cortex, during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to lateral cortex, with protein distributed in cell cortex, during vegetative growth","type":"exact"},{"name":"reduced protein localization to lateral cell cortex, with protein distributed in cell cortex, during vegetative growth","type":"exact"}],"termid":"FYPO:0007871"}


id: MONDO:0011313
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any megalencephaly-polymicrogyria-postaxial polydactyly-hydrocephalus syndrome in which the cause of the disease is a mutation in the PIK3R2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"megalencephaly-polymicrogyria-postaxial polydactyly-hydrocephalus syndrome","termid":"MONDO:0019375"},{"relation_name":"is_a","term_name":"PIK3R2-related overgrowth spectrum","termid":"MONDO:1040004"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0020022"}],"interesting_parent_ids":["MONDO:0020022"],"is_obsolete":false,"name":"megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome 1","secondary_identifiers":["MEDGEN:861164","UMLS:C4012727","MESH:C566381","OMIM:603387","GARD:18077"],"synonyms":[{"name":"MPPH1","type":"related"},{"name":"Meg-PMG-Megacc syndrome","type":"related"},{"name":"PIK3R2 megalencephaly-polymicrogyria-postaxial polydactyly-hydrocephalus syndrome","type":"exact"},{"name":"megalencephaly, mega corpus callosum, and complete lack of motor development","type":"related"},{"name":"megalencephaly, polymicrogyria, mega corpus callosum syndrome","type":"related"},{"name":"megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome 1","type":"exact"},{"name":"megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome type 1","type":"exact"},{"name":"megalencephaly-polymicrogyria-postaxial polydactyly-hydrocephalus syndrome caused by mutation in PIK3R2","type":"exact"}],"termid":"MONDO:0011313","xrefs":{"Monarch":{"xref_id":"0011313"}}}


id: PBO:0060128
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND6 pseudogene 29","termid":"PBO:0060128"}


id: PBO:0069858
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1145, pseudogene","termid":"PBO:0069858"}


id: PBO:0057346
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 541","termid":"PBO:0057346"}


id: PBO:0079508
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin pseudogene 6","termid":"PBO:0079508"}


id: MONDO:0012790
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any amyotrophic lateral sclerosis in which the cause of the disease is a mutation in the TARDBP gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial amyotrophic lateral sclerosis","termid":"MONDO:0005144"},{"relation_name":"is_a","term_name":"frontotemporal dementia with motor neuron disease","termid":"MONDO:0017161"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0002039"}],"interesting_parent_ids":["MONDO:0002039","MONDO:0005559"],"is_obsolete":false,"name":"amyotrophic lateral sclerosis type 10","secondary_identifiers":["OMIM:612069","GARD:15540","DOID:0060201","MEDGEN:383137","MESH:C567429","UMLS:C2677565"],"synonyms":[{"name":"ALS10","type":"exact"},{"name":"Ftld-TDP, Tardbp-related","type":"related"},{"name":"TARDBP amyotrophic lateral sclerosis","type":"exact"},{"name":"TARDBP-related frontotemporal lobar degeneration with Tdp43 inclusions","type":"exact"},{"name":"amyotrophic lateral sclerosis 10","type":"exact"},{"name":"amyotrophic lateral sclerosis 10 with or without frontotemporal dementia","type":"related"},{"name":"amyotrophic lateral sclerosis 10, with or without FTD","type":"exact"},{"name":"amyotrophic lateral sclerosis 10, with or without frontotemporal dementia","type":"exact"},{"name":"amyotrophic lateral sclerosis caused by mutation in TARDBP","type":"exact"},{"name":"amyotrophic lateral sclerosis type 10","type":"exact"},{"name":"frontotemporal dementia with Tdp43 inclusions, Tardbp-related","type":"related"},{"name":"frontotemporal lobar Degeneration with Tdp43 inclusions, Tardbp-related","type":"related"},{"name":"frontotemporal lobar degeneration, TARDBP-related","type":"exact"}],"termid":"MONDO:0012790","xrefs":{"Monarch":{"xref_id":"0012790"}}}


id: PBO:0068143
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 450","termid":"PBO:0068143"}


id: PBO:0116750
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SWI/SNF related BAF chromatin remodeling complex subunit C2","termid":"PBO:0116750"}


id: PBO:0029039
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cellular_glycerol_level","termid":"PBO:0029039"}


id: MONDO:0958180
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"bradyopsia","termid":"MONDO:0012033"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"prolonged electroretinal response suppression 1","secondary_identifiers":["MEDGEN:1840510","UMLS:C5829874","DOID:0070363","OMIM:608415"],"termid":"MONDO:0958180","xrefs":{"Monarch":{"xref_id":"0958180"}}}


id: MOD:00653
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue sulfanyl group with an palmitoylsulfanyl group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"palmitoylated residue","termid":"MOD:00440"},{"relation_name":"is_a","term_name":"S-acylated residue","termid":"MOD:00672"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:01155"}],"interesting_parent_ids":["MOD:01155"],"is_obsolete":false,"name":"S-palmitoylated residue","synonyms":[{"name":"S-hexadecanoylated residue","type":"exact"},{"name":"SPamRes","type":"exact"}],"termid":"MOD:00653"}


id: PBO:0086924
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pyrimidine nucleotidase; responsible for production of nicotinamide riboside and nicotinic acid riboside; overexpression suppresses the 6-AU sensitivity of transcription elongation factor S-II, as well as resistance to other pyrimidine derivatives; SDT1 has a paralog, PHM8, that arose from the whole genome duplication","termid":"PBO:0086924"}


id: PBO:0034622
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_transcription_from_CRE_promoter_during_cellular_response_to_miconazole","termid":"PBO:0034622"}


id: PBO:0040888
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bone morphogenetic protein 10","termid":"PBO:0040888"}


id: GO:0061819
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A telomere maintenance process that results in the formation of small fragments of circular extrachromosomal DNA elements which contain telomeric DNA. It is speculated that telomeric DNA-containing double minutes are formed through a recombination event between the telomere and chromosome-internal TTAGGG-like sequences. Telomeric DNA-containing double minutes appear as two closely positioned dots in metaphase.","definition_xrefs":["GOC:nc","GOC:BHF","PMID:14690602","PMID:2397458","GOC:BHF_telomere"],"direct_ancestors":[{"relation_name":"is_a","term_name":"telomere maintenance via recombination","termid":"GO:0000722"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006310"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0032200"}],"interesting_parent_ids":["GO:0006259","GO:0032200","GO:0008150","GO:0006310"],"is_obsolete":false,"name":"telomeric DNA-containing double minutes formation","synonyms":[{"name":"TDMs formation","type":"exact"}],"termid":"GO:0061819"}


id: GO:0018043
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The formation of a C-terminal peptidyl-isoleucine amide by hydrolysis and oxidation of an interior Ile-Gly peptide in a secreted protein.","definition_xrefs":["RESID:AA0090"],"gene_count":0,"genotype_count":0,"name":"obsolete C-terminal peptidyl-isoleucine amidation (obsolete GO:0018043)","termid":"GO:0018043"}


id: PBO:0069178
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 432, pseudogene","termid":"PBO:0069178"}


id: MONDO:0011161
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sperm-specific antigen 1","secondary_identifiers":["UMLS:C1420425","MEDGEN:244171","OMIM:601876"],"synonyms":[{"name":"SSFA1","type":"related"},{"name":"fertilisation antigen 1","type":"related"},{"name":"fertilization antigen 1","type":"related"},{"name":"sperm-specific antigen 1","type":"exact"},{"name":"sperm-specific antigen type 1","type":"exact"}],"termid":"MONDO:0011161","xrefs":{"Monarch":{"xref_id":"0011161"}}}


id: GO:0055016
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the hypochord over time, from its formation to the mature structure. The hypochord is a transient rod-like structure in the embryos of fish, lampreys and amphibians that is located immediately ventral to the notochord. The hypochord may play a role in positioning the dorsal aorta.","definition_xrefs":["GOC:lb","GOC:devbiol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tissue development","termid":"GO:0009888"},{"relation_name":"is_a","term_name":"embryonic organ development","termid":"GO:0048568"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hypochord development","synonyms":[{"name":"subnotochordal rod development","type":"exact"}],"termid":"GO:0055016"}


id: GO:0008048
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and increases the activity of guanylate cyclase in response to a change in calcium ion concentration.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"guanylate cyclase activator activity","termid":"GO:0030250"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"regulates","termid":"GO:0003824"},{"rel_name":"regulates","termid":"GO:0009975"},{"rel_name":"regulates","termid":"GO:0016829"},{"rel_name":"positively_regulates","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"positively_regulates","termid":"GO:0016829"},{"rel_name":"positively_regulates","termid":"GO:0009975"}],"interesting_parent_ids":["GO:0003674","GO:0098772","GO:0009975","GO:0003824","GO:0030234","GO:0140677","GO:0016829"],"is_obsolete":false,"name":"calcium sensitive guanylate cyclase activator activity","termid":"GO:0008048"}


id: PBO:0084843
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial ribosomal protein of the large subunit; has similarity to E. coli L4 ribosomal protein and human mitoribosomal MRP-L4 protein; essential for viability, unlike most other mitoribosomal proteins","termid":"PBO:0084843"}


id: MONDO:0021534
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A well differentiated, low grade neuroendocrine tumor (carcinoid tumor) that arises from the rectum. The mitotic count is less than 2 per 10 HPF and/or the Ki67 index is equal to or less than 2 percent.","definition_xrefs":["NCIT:C5547"],"direct_ancestors":[{"relation_name":"is_a","term_name":"colorectal neuroendocrine tumor G1","termid":"MONDO:0006162"},{"relation_name":"is_a","term_name":"rectal neuroendocrine tumor","termid":"MONDO:0015068"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"rectal neuroendocrine tumor G1","secondary_identifiers":["MEDGEN:233389","SCTID:713306000","UMLS:C1335678"],"synonyms":[{"name":"carcinoid of rectum","type":"exact"},{"name":"carcinoid of the rectum","type":"exact"},{"name":"carcinoid tumor of rectum","type":"exact"},{"name":"carcinoid tumor of the rectum","type":"exact"},{"name":"carcinoid tumour of rectum","type":"exact"},{"name":"carcinoid tumour of the rectum","type":"exact"},{"name":"grade 1 neuroendocrine neoplasm of rectum","type":"exact"},{"name":"rectal NET G1","type":"exact"},{"name":"rectal carcinoid","type":"exact"},{"name":"rectal carcinoid tumor","type":"exact"},{"name":"rectal carcinoid tumour","type":"exact"},{"name":"rectal neuroendocrine tumor G1","type":"exact"},{"name":"rectum NET G1","type":"exact"},{"name":"rectum carcinoid tumor","type":"exact"},{"name":"rectum carcinoid tumor (disease)","type":"exact"},{"name":"rectum carcinoid tumour","type":"exact"},{"name":"rectum carcinoid tumour (disease)","type":"exact"},{"name":"rectum neuroendocrine neoplasm G1","type":"exact"},{"name":"rectum neuroendocrine tumor, well differentiated, low grade","type":"exact"}],"termid":"MONDO:0021534","xrefs":{"Monarch":{"xref_id":"0021534"}}}


id: PBO:0073536
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SH3 and PX domains 2A","termid":"PBO:0073536"}


id: GO:0103093
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 3-(7'-methylthio)heptylmalate = H+ + 2-oxo-10-methylthiodecanoate + carbon dioxide.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete methylthioalkylmalate dehydrogenase activity (obsolete GO:0103093)","termid":"GO:0103093"}


id: GO:0033728
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: protochlorophyllide a + NADP+ = 3,8-divinyl protochlorophyllide a + NADPH + H+, and chlorophyllide a + NADP+ = 3,8-divinyl chlorophyllide a + NADPH + H+.","definition_xrefs":["EC:1.3.1.75"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","termid":"GO:0016628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity","synonyms":[{"name":"3,8-divinyl protochlorophyllide a 8-vinyl reductase activity","type":"exact"},{"name":"3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activit","type":"exact"},{"name":"4VCR","type":"related"},{"name":"[4-vinyl]chlorophyllide a reductase activity","type":"related"},{"name":"chlorophyllide-a:NADP+ oxidoreductase activity","type":"related"}],"termid":"GO:0033728"}


id: PBO:0042879
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cilia and flagella associated protein 206","termid":"PBO:0042879"}


id: PBO:0040281
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP1A1 antisense RNA 1","termid":"PBO:0040281"}


id: SO:0001602
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A variant that changes the translational product with respect to the reference.","direct_ancestors":[{"relation_name":"is_a","term_name":"translational_product_function_variant","termid":"SO:0001539"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complex_change_of_translational_product_variant","synonyms":[{"name":"complex change of translational product variant","type":"exact"}],"termid":"SO:0001602"}


id: MONDO:0014071
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any muscular dystrophy-dystroglycanopathy, type A in which the cause of the disease is a mutation in the B3GALNT2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"muscular dystrophy-dystroglycanopathy, type A","termid":"MONDO:0000171"},{"relation_name":"is_a","term_name":"muscle-eye-brain disease","termid":"MONDO:0018939"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0002320","MONDO:0005336"],"is_obsolete":false,"name":"muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 11","secondary_identifiers":["MEDGEN:767552","DOID:0111230","OMIM:615181","GARD:15915","UMLS:C3554638"],"synonyms":[{"name":"B3GALNT2 muscular dystrophy-dystroglycanopathy, type A","type":"exact"},{"name":"MDDGA11","type":"related"},{"name":"Walker-Warburg syndrome or muscle-eye-brain disease, B3Galnt2-related","type":"related"},{"name":"muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 11","type":"related"},{"name":"muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 11","type":"exact"},{"name":"muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies, type A, 11","type":"exact"},{"name":"muscular dystrophy-dystroglycanopathy, type A caused by mutation in B3GALNT2","type":"exact"}],"termid":"MONDO:0014071","xrefs":{"Monarch":{"xref_id":"0014071"}}}


id: PATO:0020002
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A biological sex quality inhering in an individual or a population based upon genotypic composition that confers the capability for an organism to differentiate female gonads.","definition_xrefs":["PATOC:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"genotypic sex","termid":"PATO:0020000"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"female genotypic sex","termid":"PATO:0020002"}


id: GO:1990455
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A phospholipid phosphatase complex that catalyses the hydrolysis of the second messenger PtdIns (3,4,5)P3. Will also dephosphorylate PtdIns(3,4)P2, PtdIns3P, and Ins(1,3,4,5)P4. Dimerization is critical for its lipid phosphatase function.","definition_xrefs":["PMID:24766807","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylinositol phosphate phosphatase complex","termid":"GO:1904144"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"PTEN phosphatase complex","synonyms":[{"name":"phosphatase and tensin homolog","type":"exact"},{"name":"phosphatase and tensin homolog deleted on chromosome ten homodimer","type":"exact"},{"name":"phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN homodimer","type":"exact"}],"termid":"GO:1990455"}


id: MONDO:0003948
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A hemangioma arising from the cerebral hemisphere.","definition_xrefs":["NCIT:C5433"],"direct_ancestors":[{"relation_name":"is_a","term_name":"brain hemangioma","termid":"MONDO:0003428"},{"relation_name":"is_a","term_name":"benign neoplasm of cerebrum","termid":"MONDO:0021497"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cerebral hemangioma","secondary_identifiers":["MEDGEN:164084","UMLS:C0877388","DOID:6621"],"synonyms":[{"name":"angioma of cerebral hemispheres","type":"exact"},{"name":"angioma of cerebrum","type":"exact"},{"name":"angioma of the cerebral hemispheres","type":"exact"},{"name":"angioma of the cerebrum","type":"exact"},{"name":"cerebral angioma","type":"exact"},{"name":"cerebral hemangioma","type":"exact"},{"name":"cerebral hemispheric angioma","type":"exact"},{"name":"cerebral hemispheric hemangioma","type":"exact"},{"name":"hemangioma of cerebral hemispheres","type":"exact"},{"name":"hemangioma of cerebrum","type":"exact"},{"name":"hemangioma of telencephalon","type":"exact"},{"name":"hemangioma of the cerebral hemispheres","type":"exact"},{"name":"hemangioma of the cerebrum","type":"exact"},{"name":"telencephalon hemangioma","type":"exact"}],"termid":"MONDO:0003948","xrefs":{"Monarch":{"xref_id":"0003948"}}}


id: PBO:0082630
data:
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id: PBO:0062367
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily A member 2 pseudogene","termid":"PBO:0062367"}


id: GO:0000189
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a MAP kinase to the nucleus upon activation.","definition_xrefs":["PMID:9561267"],"gene_count":0,"genotype_count":0,"name":"obsolete MAPK import into nucleus (obsolete GO:0000189)","synonyms":[{"name":"nuclear translocation of MAPK","type":"narrow"}],"termid":"GO:0000189"}


id: GO:0030205
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways involving dermatan sulfate, any of a group of glycosaminoglycans with repeats consisting of beta-(1,4)-linked L-iduronyl-beta-(1,3)-N-acetyl-D-galactosamine 4-sulfate units. They are important components of ground substance or intercellular cement of skin and some connective tissues.","definition_xrefs":["GOC:mah","ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete dermatan sulfate metabolic process (obsolete GO:0030205)","synonyms":[{"name":"chondroitin sulfate B metabolic process","type":"exact"},{"name":"chondroitin sulfate B metabolism","type":"exact"},{"name":"dermatan sulfate metabolism","type":"exact"},{"name":"dermatan sulphate metabolic process","type":"exact"},{"name":"dermatan sulphate metabolism","type":"exact"}],"termid":"GO:0030205"}


id: PBO:0067062
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 87, pseudogene","termid":"PBO:0067062"}


id: PR:000035574
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A MAD2:MAD3 complex whose components are encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PMID:12676091","PRO:KER"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAD2:MAD3 complex (Schizosaccharomyces pombe 972h-)","synonyms":[{"name":"Spom972h-(MAD2:MAD3)","type":"exact"}],"termid":"PR:000035574"}


id: _global:transports
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"Holds between p and c when p is a transport process or transporter activity and the outcome of this p is to move c from one location to another.","direct_ancestors":[{"relation_name":"is_a","term_name":"transports_or_maintains_localization_of","termid":"_global:transports_or_maintains_localization_of"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transports","secondary_identifiers":["RO:0002020"],"termid":"_global:transports"}


id: PBO:0053851
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1120","termid":"PBO:0053851"}


id: MONDO:0002647
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An acute or chronic, bacterial or viral inflammatory process affecting the larynx. Signs and symptoms include sore throat, cough, swallowing difficulties, and hoarseness.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"laryngeal disorder","termid":"MONDO:0004382"},{"relation_name":"is_a","term_name":"inflammatory disease","termid":"MONDO:0021166"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"laryngitis","secondary_identifiers":["NCIT:C26811","ICD9:464.00","DOID:3437","SCTID:45913009","UMLS:C0023067","MESH:D007827","MEDGEN:7273"],"synonyms":[{"name":"inflammation of larynx","type":"exact"},{"name":"laryngeal Inflammation","type":"exact"},{"name":"laryngeal inflammation","type":"exact"},{"name":"larynx inflammation","type":"exact"}],"termid":"MONDO:0002647","xrefs":{"Monarch":{"xref_id":"0002647"}}}


id: MONDO:0700043
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  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"partial trisomy/tetrasomy of chromosome 9","termid":"MONDO:0016930"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syndrome caused by partial chromosomal duplication of the short arm of chromosome 9","termid":"MONDO:0700043","xrefs":{"Monarch":{"xref_id":"0700043"}}}


id: PBO:0086483
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative, non-essential component vacuolar ATPase; conserved in fungi; SWAT-GFP fusion protein localizes to vacuole membrane; partially overlaps the dubious genes YPR169W-A, YPR170W-A and YRP170C","termid":"PBO:0086483"}


id: PBO:0046300
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EMX2 opposite strand/antisense RNA","termid":"PBO:0046300"}


id: MONDO:0002953
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A variant of basal cell carcinoma presenting as a pale, indurated plaque, usually in the upper trunk or face. Morphologically, it is characterized by the presence of strands, cords, and columns of basaloid cells infiltrating the dermis. Perineural invasion may be present and the basaloid cell infiltrate may extend into deeper tissues.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"skin basal cell carcinoma","termid":"MONDO:0005341"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0004992"],"is_obsolete":false,"name":"skin infiltrative basal cell carcinoma","secondary_identifiers":["ICDO:8092/3","UMLS:C0334257","DOID:4299","MEDGEN:87201","NCIT:C27539"],"synonyms":[{"name":"infiltrating basal cell carcinoma","type":"exact"},{"name":"infiltrative basal cell carcinoma","type":"related"},{"name":"skin infiltrating basal cell carcinoma","type":"exact"}],"termid":"MONDO:0002953","xrefs":{"Monarch":{"xref_id":"0002953"}}}


id: PBO:0071704
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L39 pseudogene 2","termid":"PBO:0071704"}


id: MONDO:0026762
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Wieacker-Wolff syndrome (spectrum)","termid":"MONDO:0025445"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Wieacker-Wolff syndrome, female-restricted","secondary_identifiers":["MEDGEN:1715791","OMIM:301041","UMLS:C5393303"],"synonyms":[{"name":"WIEACKER-WOLFF SYNDROME, FEMALE-RESTRICTED","type":"related"},{"name":"WRWFFR","type":"related"},{"name":"Wieacker-Wolff syndrome, female-restricted, X-linked dominant","type":"exact"}],"termid":"MONDO:0026762","xrefs":{"Monarch":{"xref_id":"0026762"}}}


id: SO:0000293
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  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A repetitive element that is engineered and foreign.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"engineered","termid":"SO:0000783"},{"relation_name":"has_quality","term_name":"foreign","termid":"SO:0000784"},{"relation_name":"is_a","term_name":"repeat_region","termid":"SO:0000657"},{"relation_name":"is_a","term_name":"engineered_foreign_region","termid":"SO:0000805"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"engineered_foreign_repetitive_element","synonyms":[{"name":"engineered foreign repetitive element","type":"exact"}],"termid":"SO:0000293"}


id: SO:0002356
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An RNA comprising an extended inverted repeat, the stem of which is typically much longer than that of miRNA precursors and can be up to 400 base pairs in length. hpRNAs are processed by Dicer-2 to generate endogenous short interfering RNAs (siRNAs).","definition_xrefs":["PMID:25544562","PMID:18463630","PMID:18719707"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ncRNA","termid":"SO:0000655"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hpRNA","synonyms":[{"name":"Hairpin RNA","type":"exact"}],"termid":"SO:0002356"}


id: PBO:0087667
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the inner ring of the nuclear pore complex (NPC); contributes to NPC assembly and tethering of DNA to the nuclear periphery; both Nup170p and NUP157p are similar to human Nup155p; NUP157 has a paralog, NUP170, that arose from the whole genome duplication","termid":"PBO:0087667"}


id: PBO:0004420
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amino acid permease, predicted Meu22","termid":"PBO:0004420"}


id: PBO:0055709
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"limb development membrane protein 1","termid":"PBO:0055709"}


id: GO:0008132
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the hydrolysis of proteins, including elastin.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete pancreatic elastase activity (obsolete GO:0008132)","synonyms":[{"name":"pancreatic elastase activity","type":"exact"}],"termid":"GO:0008132"}


id: PBO:0040475
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATRX chromatin remodeler","termid":"PBO:0040475"}


id: GO:0030120
data:
  {"annotated_genes":["SJAG_02539","SJAG_00104","SJAG_04644","SJAG_02177","SJAG_03907","SJAG_03558","SJAG_04569","SJAG_02805","SJAG_04517","SJAG_00192","SJAG_01167","SJAG_05344","SJAG_00379","SJAG_00072","SJAG_02234","SJAG_02349","SJAG_02482","SJAG_04474","SJAG_00800","SJAG_04609","SJAG_04002","SJAG_04565","SJAG_02282","SJAG_05345","SJAG_00284","SJAG_00906","SJAG_03153","SJAG_01809","SJAG_04070","SJAG_01508","SJAG_04391"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[62231,78117,113088,113300],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030121"},{"annotations":[108645,78455,58326,74704],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030122"},{"annotations":[65655,58810],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030130"},{"annotations":[74072,80115],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030125"},{"annotations":[80246,98776,93570,78397,64397,71249,78743,107437,73877],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030126"},{"annotations":[76846,73398,71689,78781,75162,75393,77435,95843,76022,71719],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030127"}]},"cv_name":"cellular_component","definition":"A membrane coat found on a coated vesicle.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane coat","termid":"GO:0030117"},{"relation_name":"part_of","term_name":"coated vesicle membrane","termid":"GO:0030662"}],"gene_count":31,"genes_by_uniquename":{"SJAG_00072":null,"SJAG_00104":null,"SJAG_00192":null,"SJAG_00284":null,"SJAG_00379":null,"SJAG_00800":null,"SJAG_00906":null,"SJAG_01167":null,"SJAG_01508":null,"SJAG_01809":null,"SJAG_02177":null,"SJAG_02234":null,"SJAG_02282":null,"SJAG_02349":null,"SJAG_02482":null,"SJAG_02539":null,"SJAG_02805":null,"SJAG_03153":null,"SJAG_03558":null,"SJAG_03907":null,"SJAG_04002":null,"SJAG_04070":null,"SJAG_04391":null,"SJAG_04474":null,"SJAG_04517":null,"SJAG_04565":null,"SJAG_04569":null,"SJAG_04609":null,"SJAG_04644":null,"SJAG_05344":null,"SJAG_05345":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0031410","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"vesicle coat","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["NIF_Subcellular:sao1177708494"],"termid":"GO:0030120","terms_by_termid":{"GO:0030121":null,"GO:0030122":null,"GO:0030125":null,"GO:0030126":null,"GO:0030127":null,"GO:0030130":null}}


id: PBO:0048956
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GOT2 pseudogene 7","termid":"PBO:0048956"}


id: GO:0008765
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: meso-2,6-diaminopimelate + ATP + UDP-N-acetylmuramoyl-L-alanyl-D-glutamate = ADP + 2 H+ + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminoheptanedioate.","definition_xrefs":["EC:6.3.2.13","RHEA:23676"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-amino acid ligase activity","termid":"GO:0016881"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016874","GO:0003674"],"is_obsolete":false,"name":"UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase activity","secondary_identifiers":["MetaCyc:UDP-NACMURALGLDAPLIG-RXN","KEGG_REACTION:R02788"],"synonyms":[{"name":"MurE synthetase activity","type":"related"},{"name":"UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:(L)-meso-2,6-diaminoheptanedioate gamma-ligase (ADP-forming)","type":"related"},{"name":"UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso-2,6-diamino-heptanedioate ligase (ADP-forming) activity","type":"related"},{"name":"UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelate synthetase activity","type":"related"},{"name":"UDP-N-acetylmuramyl-tripeptide synthetase activity","type":"related"}],"termid":"GO:0008765"}


id: GO:0060007
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A vestibular reflex by which a response to a linear acceleration stimulus begins with an afferent nerve impulse from a receptor in the otolith and ends with the compensatory action of eye muscles. Signaling never reaches a level of consciousness.","definition_xrefs":["PMID:11784757","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vestibular reflex","termid":"GO:0060005"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"linear vestibuloocular reflex","termid":"GO:0060007"}


id: MONDO:0016487
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Beta-thalassemia (BT) intermedia is a form of BT characterized by mild to moderate anemia which does not or only occasionally requires transfusion.","definition_xrefs":["Orphanet:231222"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta-thalassemia HBB/LCRB","termid":"MONDO:0013517"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0002280"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0002280"],"is_obsolete":false,"name":"beta-thalassemia intermedia","secondary_identifiers":["MEDGEN:450544","GARD:17163","SCTID:191189009","DOID:0080772","UMLS:C0472767","MedDRA:10062923","ICD9:282.49"],"termid":"MONDO:0016487","xrefs":{"Monarch":{"xref_id":"0016487"}}}


id: PBO:0029160
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_sensitivity_to_chemical","termid":"PBO:0029160"}


id: GO:0001582
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events required for a sweet taste stimulus to be received and converted to a molecular signal.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detection of chemical stimulus involved in sensory perception of taste","termid":"GO:0050912"},{"relation_name":"part_of","term_name":"sensory perception of sweet taste","termid":"GO:0050916"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of chemical stimulus involved in sensory perception of sweet taste","synonyms":[{"name":"perception of sweet taste, detection of chemical stimulus","type":"exact"},{"name":"perception of sweet taste, sensory transduction of chemical stimulus","type":"exact"},{"name":"sensory detection of chemical stimulus during perception of sweet taste","type":"exact"},{"name":"sensory detection of sweet taste","type":"exact"},{"name":"sensory transduction of chemical stimulus during perception of sweet taste","type":"exact"},{"name":"sensory transduction of sweet taste","type":"exact"},{"name":"sweet taste detection","type":"exact"}],"termid":"GO:0001582"}


id: FYPO:0004437
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the frequency of occurrence of mitotic recombination is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah","PMID:17515930"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal mitotic recombination","termid":"FYPO:0000503"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0001320","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal mitotic recombination frequency","synonyms":[{"name":"normal mitotic recombination frequency during vegetative growth","type":"exact"},{"name":"normal occurrence of mitotic recombination","type":"exact"},{"name":"normal recombination frequency during mitotic cell cycle","type":"related"}],"termid":"FYPO:0004437"}


id: PBO:0108712
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RabGEF, implicated in endosomal transport","termid":"PBO:0108712"}


id: GO:0032967
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of biosynthetic process","termid":"GO:0009891"},{"relation_name":"is_a","term_name":"positive regulation of collagen metabolic process","termid":"GO:0010714"},{"relation_name":"is_a","term_name":"regulation of collagen biosynthetic process","termid":"GO:0032965"},{"relation_name":"positively_regulates","term_name":"collagen biosynthetic process","termid":"GO:0032964"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of collagen biosynthetic process","synonyms":[{"name":"positive regulation of collagen anabolism","type":"exact"},{"name":"positive regulation of collagen biosynthesis","type":"exact"},{"name":"positive regulation of collagen formation","type":"exact"},{"name":"positive regulation of collagen synthesis","type":"exact"}],"termid":"GO:0032967"}


