# terms

id: PBO:0017817
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial FUN14 family protein involved in mitophagy","termid":"PBO:0017817"}


id: PR:O14250
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A proteasome subunit alpha type-1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01345","PANTHER:PTHR11599:SF12"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome subunit alpha type-6 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6G10.04c","secondary_identifiers":["UniProtKB:O14250"],"synonyms":[{"name":"Spom972h-PSMA1","type":"exact"}],"termid":"PR:O14250"}


id: GO:0071729
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the beak are generated and organized. The avian beak is an external anatomical structure, in the head region, that is adapted for feeding self and young, catching prey, probing, etc. It encompasses, but is not restricted to, the maxilla, mandible, maxillary rhamphotheca, mandibular rhamphotheca, nostril, nasal fossa, nasal bones, egg tooth and rictus.","definition_xrefs":["GOC:lp","ISBN:0702008729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"},{"relation_name":"part_of","term_name":"beak development","termid":"GO:0071728"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"beak morphogenesis","termid":"GO:0071729"}


id: PBO:0053243
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LHFPL tetraspan subfamily member 7","termid":"PBO:0053243"}


id: PBO:0044496
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell cycle regulator of NHEJ","termid":"PBO:0044496"}


id: GO:1901919
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of exoribonuclease activity.","definition_xrefs":["PMID:22570495","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of nuclease activity","termid":"GO:0032075"},{"relation_name":"is_a","term_name":"regulation of ribonuclease activity","termid":"GO:0060700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of exoribonuclease activity","synonyms":[{"name":"activation of exoribonuclease activity","type":"narrow"},{"name":"up regulation of exoribonuclease activity","type":"exact"},{"name":"up-regulation of exoribonuclease activity","type":"exact"},{"name":"upregulation of exoribonuclease activity","type":"exact"}],"termid":"GO:1901919"}


id: PBO:0027664
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_heterochromatin_organization_during_vegetative_growth","termid":"PBO:0027664"}


id: MONDO:0006137
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplastic process in the cervix characterized by morphologic features of both moderate and severe intraepithelial neoplasia.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"cervical adenocarcinoma","termid":"MONDO:0005153"},{"relation_name":"is_a","term_name":"cervical intraepithelial neoplasia","termid":"MONDO:0022394"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cervical intraepithelial neoplasia grade 2/3","secondary_identifiers":["UMLS:C2986622","EFO:1000166","MEDGEN:458848","NCIT:C94676"],"synonyms":[{"name":"CIN 2/3","type":"exact"}],"termid":"MONDO:0006137","xrefs":{"Monarch":{"xref_id":"0006137"}}}


id: MONDO:0011859
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete distal myopathy with early respiratory muscle involvement (obsolete MONDO:0011859)","termid":"MONDO:0011859","xrefs":{"Monarch":{"xref_id":"0011859"}}}


id: PBO:0084921
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Monoacylglycerol and triacylglycerol lipase; MAG lipase with preference for palmitoyl-MAG; TAG lipase involved in TAG catabolism; minor role in medium-chain fatty acid ethyl ester biosynthesis; contains an alpha/beta hydrolase domain and a typical lipase motif (GXSXG); similar to acyltransferases, Eeb1p, Eht1p, and human ABHD1","termid":"PBO:0084921"}


id: PBO:0091557
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"the sequence previously referred to as SPAC27D7.10c was a duplication caused by misassembly of the cosmid","termid":"PBO:0091557"}


id: PBO:0053490
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 467","termid":"PBO:0053490"}


id: GO:1904451
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of hydrogen:potassium-exchanging ATPase activity.","definition_xrefs":["GOC:TermGenie","GO_REF:0000059","PMID:11897793"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of proton transport","termid":"GO:0010155"},{"relation_name":"is_a","term_name":"regulation of ATP-dependent activity","termid":"GO:0043462"},{"relation_name":"is_a","term_name":"regulation of potassium ion transmembrane transporter activity","termid":"GO:1901016"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of potassium:proton exchanging ATPase activity","synonyms":[{"name":"regulation of (K+ + H+)-ATPase activity","type":"exact"},{"name":"regulation of ATP phosphohydrolase (H+/K+-exchanging)","type":"exact"},{"name":"regulation of H+-K+-ATPase activity","type":"exact"},{"name":"regulation of H+/K(+)-ATPase activity","type":"exact"},{"name":"regulation of H+/K(+)-exchanging ATPase activity","type":"exact"},{"name":"regulation of H+/K+-ATPase activity","type":"exact"},{"name":"regulation of H+/K+-exchanging ATPase activity","type":"exact"},{"name":"regulation of H,K-ATPase activity","type":"exact"},{"name":"regulation of gastric H+/K(+) ATPase activity","type":"narrow"},{"name":"regulation of gastric H+/K+ ATPase","type":"narrow"},{"name":"regulation of hydrogen/potassium-exchanging ATPase activity","type":"exact"},{"name":"regulation of hydrogen:potassium exchanging ATPase activity","type":"exact"},{"name":"regulation of hydrogen:potassium-exchanging ATPase activity","type":"exact"},{"name":"regulation of proton pump activity","type":"broad"}],"termid":"GO:1904451"}


id: GO:0032998
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex composed of an Fc-epsilon RI alpha chain and an Fc-epsilon RI gamma chain dimer with or without an Fc-episilon RI beta chain and additional signaling components. The complex functions primarily as an activating receptor for IgE.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Fc receptor complex","termid":"GO:0032997"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005886","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"Fc-epsilon receptor I complex","synonyms":[{"name":"FceRI complex","type":"exact"},{"name":"IgE receptor complex","type":"broad"},{"name":"immunoglobulin E receptor complex","type":"broad"}],"termid":"GO:0032998"}


id: FYPO:0003864
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount a specific substance measured in a cell is lower than normal when the cell is in G0 phase.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased level of substance in cell","termid":"FYPO:0000991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased level of substance in cell during G0","synonyms":[{"name":"decreased accumulation of substance in cell during G0","type":"related"},{"name":"decreased level of substance in cell during cell quiescence","type":"exact"},{"name":"decreased level of substance in cell during quiescence","type":"exact"},{"name":"decreased substance level during G0","type":"exact"},{"name":"reduced level of substance in cell during G0","type":"exact"}],"termid":"FYPO:0003864"}


id: PR:O43033
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- oms1 gene.","definition_xrefs":["UniProtKB:O43033","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized methyltransferase C3B9.04, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC3B9.04","synonyms":[{"name":"Spom972h-oms1","type":"exact"}],"termid":"PR:O43033"}


id: GO:0061068
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the urethra over time from its initial formation to the mature structure. The urethra is a renal system organ that carries urine from the bladder to outside the body.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"animal organ development","termid":"GO:0048513"},{"relation_name":"part_of","term_name":"renal system development","termid":"GO:0072001"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"urethra development","termid":"GO:0061068"}


id: PBO:0070264
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U105B small nucleolar","termid":"PBO:0070264"}


id: PBO:0000141
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"agmatinase (predicted)","termid":"PBO:0000141"}


id: PBO:0081743
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 674","termid":"PBO:0081743"}


id: PBO:0057251
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 451b","termid":"PBO:0057251"}


id: PBO:0090404
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CENP-A amino terminus domain (NTD) isomerase Ani1","termid":"PBO:0090404"}


id: PBO:0055181
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2605","termid":"PBO:0055181"}


id: GO:0170051
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A ribonucleoprotein complex containing a small CB-specific RNA (scaRNA), with a short sequence motif (GU/UG wobble stem) for CB localization that is capable of methylation of target RNAs.","definition_xrefs":["PMID:27775477"],"direct_ancestors":[{"relation_name":"is_a","term_name":"box C/D RNP complex","termid":"GO:0170049"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"box C/D methylation guide scaRNP complex","termid":"GO:0170051"}


id: FYPO:0005932
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nucleosome occupancy is lower than normal at long terminal repeat (LTR) regions. Nucleosome occupancy measures the tendency for DNA in a given region to be packaged into nucleosomes.","definition_xrefs":["PMID:25798942","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased nucleosome occupancy","termid":"FYPO:0004491"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000641"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000641","FYPO:0000002"],"is_obsolete":false,"name":"decreased nucleosome occupancy at long terminal repeat","synonyms":[{"name":"decreased nucleosome occupancy at LTR","type":"exact"},{"name":"decreased nucleosome occupancy at long terminal repeat during mitotic cell cycle","type":"related"},{"name":"decreased nucleosome occupancy at long terminal repeat during vegetative growth","type":"exact"},{"name":"decreased nucleosome occupancy in long terminal repeat","type":"exact"},{"name":"reduced nucleosome occupancy at long terminal repeat","type":"exact"}],"termid":"FYPO:0005932"}


id: GO:0007356
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Specification of the central (trunk) regions of the embryo by the gap genes; exemplified in insects by the actions of the Kruppel gene product.","definition_xrefs":["ISBN:0879694238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anterior/posterior pattern specification","termid":"GO:0009952"},{"relation_name":"part_of","term_name":"zygotic determination of anterior/posterior axis, embryo","termid":"GO:0007354"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"thorax and anterior abdomen determination","termid":"GO:0007356"}


id: GO:0141159
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont inhibits or disrupts the normal acidification of host phagosomes. Mechanisms by which a symbiont prevents host phagosome acidification include the inhibitition of host V-ATPase, the proton pump that acidifies the phagosome, or disruption of the phagosome membrane by pore-forming toxin. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:20333253","PMID:22087003","PMID:33505976"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host defense response","termid":"GO:0052031"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated suppression of host phagosome acidification","termid":"GO:0141159"}


id: GO:0047111
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ferricytochrome C-553 + formate = ferrocytochrome C-553 + CO2.","definition_xrefs":["EC:1.17.2.3","MetaCyc:1.2.2.3-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors, cytochrome as acceptor","termid":"GO:0016622"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"formate dehydrogenase (cytochrome-c-553) activity","secondary_identifiers":["RHEA:15189"],"synonyms":[{"name":"formate dehydrogenase (cytochrome c-553)","type":"related"},{"name":"formate:ferricytochrome-c-553 oxidoreductase activity","type":"related"}],"termid":"GO:0047111"}


id: PBO:0074981
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 114-23","termid":"PBO:0074981"}


id: MONDO:0006987
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An aortic stenosis caused by fibromuscular stenosis or hypertrophic cardiomyopathy. It may be associated with congenital heart defects.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aortic valve stenosis","termid":"MONDO:0042981"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"subvalvular aortic stenosis","secondary_identifiers":["MEDGEN:90950","NANDO:2100093","MedDRA:10042431","NANDO:2200277","NCIT:C85172","UMLS:C0340375","EFO:1001199","SCTID:204368006","GARD:5052","MESH:D001020","DOID:5805"],"termid":"MONDO:0006987","xrefs":{"Monarch":{"xref_id":"0006987"}}}


id: PR:O13981
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- emc1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13981"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER membrane protein complex subunit 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC25H1.07","synonyms":[{"name":"Spom972h-emc1","type":"exact"}],"termid":"PR:O13981"}


id: MONDO:0008212
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pechet factor deficiency","secondary_identifiers":["MEDGEN:358349","MESH:C566814","OMIM:169200","UMLS:C1868545"],"synonyms":[{"name":"Dynia factor deficiency","type":"related"},{"name":"Pechet factor deficiency","type":"exact"}],"termid":"MONDO:0008212","xrefs":{"Monarch":{"xref_id":"0008212"}}}


id: MONDO:1012209
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"perosomus elumbis, non-human animal","termid":"MONDO:1011668"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"perosomus elumbis, pig","secondary_identifiers":["OMIA:000789-9823"],"termid":"MONDO:1012209","xrefs":{"Monarch":{"xref_id":"1012209"}}}


id: PBO:0086615
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to both the cytoplasm and the nucleus and is induced in response to the DNA-damaging agent MMS","termid":"PBO:0086615"}


id: GO:0090360
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of any platelet-derived growth factor due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine production","termid":"GO:0001816"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"platelet-derived growth factor production","termid":"GO:0090360"}


id: PBO:0072859
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SAP domain containing ribonucleoprotein","termid":"PBO:0072859"}


id: GO:0030957
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to Tat, a viral transactivating regulatory protein from the human immunodeficiency virus, or the equivalent protein from another virus.","definition_xrefs":["GOC:mah","PMID:9094689"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II-specific DNA-binding transcription factor binding","termid":"GO:0061629"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"Tat protein binding","termid":"GO:0030957"}


id: PBO:0066867
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 167","termid":"PBO:0066867"}


id: PR:O94642
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A tRNA-specific adenosine deaminase 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11079:SF9","PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-specific adenosine deaminase subunit tad2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16D10.10","secondary_identifiers":["UniProtKB:O94642"],"synonyms":[{"name":"SPBC16D10.10","type":"related"},{"name":"Spom972h-ADAT2","type":"exact"},{"name":"tRNA-specific adenosine-34 deaminase subunit tad2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94642"}


id: PBO:0047241
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 236 member A","termid":"PBO:0047241"}


id: PBO:0059907
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND1 pseudogene 30","termid":"PBO:0059907"}


id: FYPO:0009104
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the recoil time of the cytokynetic ring after ring ablation is increased with respect to wild type. Experimentally, a localised cut or ablation is typically achieved using a laser. The recoil time is the time it takes the recoil to stop after laser ablation. This timing, in combination with the recoil distance are used to compute effective stiffness and drag of the ring components. See PMID:36980258.","direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actomyosin contractile ring","termid":"FYPO:0004736"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0004803"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0004803","FYPO:0001320","FYPO:0000631"],"is_obsolete":false,"name":"increased actomyosin contractile ring recoil time after ring ablation","secondary_identifiers":["PMID:36980258"],"synonyms":[{"name":"increased cytokinetic ring recoil distance after laser ablation","type":"broad"}],"termid":"FYPO:0009104"}


id: GO:0009030
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + thiamine phosphate = ADP + H+ + thiamine diphosphate.","definition_xrefs":["EC:2.7.4.16","RHEA:15913"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, phosphate group as acceptor","termid":"GO:0016776"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0003824","GO:0016301"],"is_obsolete":false,"name":"thiamine-phosphate kinase activity","secondary_identifiers":["KEGG_REACTION:R00617","MetaCyc:THI-P-KIN-RXN"],"synonyms":[{"name":"ATP:thiamine-phosphate phosphotransferase activity","type":"related"},{"name":"thiamin monophosphatase activity","type":"related"},{"name":"thiamin monophosphokinase activity","type":"related"},{"name":"thiamin phosphate kinase activity","type":"exact"},{"name":"thiamin-monophosphate kinase activity","type":"related"},{"name":"thiamin-phosphate kinase activity","type":"exact"},{"name":"thiamine-monophosphate kinase activity","type":"related"}],"termid":"GO:0009030"}


id: GO:0002172
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with high affinity with an immunoglobulin of an IgM isotype via the Fc region, and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.","definition_xrefs":["GOC:signaling","GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"IgM receptor activity","termid":"GO:0001793"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"high-affinity IgM receptor activity","synonyms":[{"name":"high affinity IgM receptor activity","type":"exact"}],"termid":"GO:0002172"}


id: MONDO:0017247
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital pulmonary sequestration","termid":"MONDO:0017843"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"communicating congenital bronchopulmonary-foregut malformation","secondary_identifiers":["Orphanet:280821","GARD:21092","UMLS:C0265790","MEDGEN:539496"],"termid":"MONDO:0017247","xrefs":{"Monarch":{"xref_id":"0017247"}}}


id: GO:0102045
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-chlorobenzoate + O2 + a reduced electron acceptor = 3-chlorobenzoate-cis-3,4-diol + an oxidized electron acceptor.","definition_xrefs":["PMID:8285670","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of two atoms of oxygen into one donor","termid":"GO:0016708"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"3-chlorobenzoate-3,4-oxygenase activity","secondary_identifiers":["MetaCyc:RXN-10422"],"termid":"GO:0102045"}


id: PBO:0081362
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 197","termid":"PBO:0081362"}


id: MONDO:0009855
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A genetic disorder that affects the ability of the body to effectively break down fat from our diet. It is typically characterized by hypotonia (low muscle tone) and seizures in the newborn period. Other symptoms include unusual facial features and an enlarged liver (hepatomegaly). Most babies with this condition nevergain anydevelopmental skills and do not survive past the age of 2. DBP deficiency is caused by mutations in the HSD17B4 gene and is inherited in an autosomal recessive manner. Some researchers have suggested classifying DBP deficiency into three subtypes, depending on how severely the mutation in the HSD17B4 gene affects the function of the gene and the protein that it codes for. Almost all individuals with types I, II, and III have similar signs and symptoms. A fourth subtype has additionally been proposed for individuals that have less severe symptoms. While there is no cure for DBP deficiency, treatment is focused on improving nutrition and growth, controlling symptoms, and limiting the progression of liver disease.","direct_ancestors":[{"relation_name":"is_a","term_name":"disorder of peroxisomal beta oxidation","termid":"MONDO:0019233"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019053"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0019053","MONDO:0005066"],"is_obsolete":false,"name":"d-bifunctional protein deficiency","secondary_identifiers":["UMLS:C0342870","GARD:4539","Orphanet:300","ICD9:277.6","MEDGEN:137982","DOID:0090031","NCIT:C119676","OMIM:261515","SCTID:238068007","NANDO:1200766"],"synonyms":[{"name":"17-beta-hydroxysteroid dehydrogenase 4 deficiency","type":"related"},{"name":"17-beta-hydroxysteroid dehydrogenase IV deficiency","type":"related"},{"name":"D-bifunctional enzyme deficiency","type":"exact"},{"name":"DBP deficiency","type":"related"},{"name":"HSD17B4 deficiency","type":"exact"},{"name":"Pbfe deficiency","type":"related"},{"name":"bifunctional enzyme deficiency","type":"related"},{"name":"d-bifunctional protein deficiency","type":"exact"},{"name":"multifunctional enzyme deficiency","type":"exact"},{"name":"peroxisomal bifunctional enzyme deficiency","type":"related"},{"name":"peroxisomal multifunctional enzyme (MFE2) deficiency","type":"exact"},{"name":"peroxisomal multifunctional enzyme deficiency","type":"exact"},{"name":"pseudo-Zellweger syndrome","type":"exact"}],"termid":"MONDO:0009855","xrefs":{"Monarch":{"xref_id":"0009855"}}}


id: FYECO:0000072
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Experiments were performed in minimal medium where glycerol is the main carbon source, but the medium also contained trace amounts of glucose (<0.1%).","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping defined medium","termid":"FYECO:0000013"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycerol MM with trace glucose","synonyms":[{"name":"glycerol main carbon source + very low glucose MM","type":"exact"},{"name":"glycerol minimal medium with trace glucose","type":"exact"}],"termid":"FYECO:0000072"}


id: PBO:0017055
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine-rich Schizosaccharomyces specific protein, predicted GPI anchor","termid":"PBO:0017055"}


id: PBO:0030737
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cell_cycle_arrest_in_mitotic_G1_phase_during_nitrogen_starvation","termid":"PBO:0030737"}


id: PBO:0031743
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_invasive_growth_(obsolete_FYPO:0000466)","termid":"PBO:0031743"}


id: MONDO:0035002
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete isolated inherited retinal disorder (obsolete MONDO:0035002)","secondary_identifiers":["Orphanet:520817"],"termid":"MONDO:0035002","xrefs":{"Monarch":{"xref_id":"0035002"}}}


id: PBO:0110869
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone deacetylase (class II), SHREC complex Clr3","termid":"PBO:0110869"}


id: PBO:0001360
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S23 (predicted)","termid":"PBO:0001360"}


id: PBO:0057511
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 629","termid":"PBO:0057511"}


id: PBO:0054970
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2384","termid":"PBO:0054970"}


id: PBO:0086485
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative nucleotide sugar transporter; has similarity to Vrg4p","termid":"PBO:0086485"}


id: GO:0051364
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The formylation of the N-terminal proline of proteins to form the derivative N-formylproline.","definition_xrefs":["PMID:12051774","RESID:AA0384","PMID:5464655"],"gene_count":0,"genotype_count":0,"name":"obsolete N-terminal peptidyl-proline N-formylation (obsolete GO:0051364)","termid":"GO:0051364"}


id: MONDO:0003206
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A hemangioma that is not present at birth but develops later in life.","definition_xrefs":["NCIT:C27018"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hemangioma","termid":"MONDO:0006500"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acquired hemangioma","secondary_identifiers":["MEDGEN:208988","UMLS:C0856897","DOID:492"],"synonyms":[{"name":"acquired hemangioma","type":"exact"}],"termid":"MONDO:0003206","xrefs":{"Monarch":{"xref_id":"0003206"}}}


id: GO:0010968
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of microtubule nucleation. Microtubule nucleation is the 'de novo' formation of a microtubule, in which tubulin heterodimers form metastable oligomeric aggregates, some of which go on to support formation of a complete microtubule. Microtubule nucleation usually occurs from a specific site within a cell.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of microtubule polymerization","termid":"GO:0031113"},{"relation_name":"regulates","term_name":"microtubule nucleation","termid":"GO:0007020"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0000226"},{"rel_name":"regulates","termid":"GO:0007010"}],"interesting_parent_ids":["GO:0044085","GO:0065003","GO:0008150","GO:0000226","GO:0007010"],"is_obsolete":false,"name":"regulation of microtubule nucleation","termid":"GO:0010968"}


id: PR:Q9P7H9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC105.03c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P7H9"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized transcriptional regulatory protein C105.03c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC105.03c","synonyms":[{"name":"Spom972h-SPAC105.03c","type":"exact"}],"termid":"PR:Q9P7H9"}


id: PBO:0051866
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interferon stimulated exonuclease gene 20","termid":"PBO:0051866"}


id: PBO:0050859
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ICMT divergent transcript","termid":"PBO:0050859"}


id: PBO:0077646
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TNF alpha induced protein 3","termid":"PBO:0077646"}


id: PBO:0078858
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TRPC6 pseudogene 6","termid":"PBO:0078858"}


id: PBO:0002312
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal-ubiquitin fusion protein Ubi1 (predicted)","termid":"PBO:0002312"}


id: PBO:0072479
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein SA pseudogene 8","termid":"PBO:0072479"}


id: PBO:0076399
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TAF1A antisense RNA 1","termid":"PBO:0076399"}


id: PBO:0011099
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"copper membrane transporter, meiotic Mfc1","termid":"PBO:0011099"}


id: GO:0072467
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process that occurs in response to signals generated as a result of cell shape checkpoint signaling.","definition_xrefs":["GOC:mtg_cell_cycle"],"gene_count":0,"genotype_count":0,"name":"obsolete response to cell shape checkpoint signaling (obsolete GO:0072467)","synonyms":[{"name":"cell shape checkpoint effector process","type":"exact"},{"name":"response to signal involved in cell shape checkpoint","type":"exact"}],"termid":"GO:0072467"}


id: GO:0090354
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving auxins, plant hormones that regulate aspects of plant growth.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of hormone metabolic process","termid":"GO:0032350"},{"relation_name":"regulates","term_name":"auxin metabolic process","termid":"GO:0009850"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of auxin metabolic process","synonyms":[{"name":"regulation of auxin metabolism","type":"exact"}],"termid":"GO:0090354"}


id: PBO:0049269
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"germ cell associated 1","termid":"PBO:0049269"}


id: GO:0042854
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving eugenol, a colorless, aromatic, liquid hydrocarbon (C10H12O2) found in clove oil.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenylpropanoid metabolic process","termid":"GO:0009698"},{"relation_name":"is_a","term_name":"ether metabolic process","termid":"GO:0018904"},{"relation_name":"is_a","term_name":"phenol-containing compound metabolic process","termid":"GO:0018958"},{"relation_name":"is_a","term_name":"benzene-containing compound metabolic process","termid":"GO:0042537"},{"relation_name":"is_a","term_name":"olefinic compound metabolic process","termid":"GO:0120254"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0019748"],"is_obsolete":false,"name":"eugenol metabolic process","synonyms":[{"name":"4-allyl-2-methoxyphenol metabolic process","type":"exact"},{"name":"4-allyl-2-methoxyphenol metabolism","type":"exact"},{"name":"eugenic acid metabolic process","type":"exact"},{"name":"eugenic acid metabolism","type":"exact"},{"name":"eugenol metabolism","type":"exact"}],"termid":"GO:0042854"}


id: MONDO:0011501
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Skeletal dysplasia with wormian bone-multiple fractures-dentinogenesis imperfecta is a skeletal disorder, reported in three patients to date, characterized clinically by multiple fractures, wormian bones of the skull, dentinogenesis imperfecta and facial dysmorphism (hypertelorism, periorbital fullness). Although the signs are very similar to osteogenesis imperfecta, characteristic cortical defects in the absence of osteopenia and collagen abnormalities are considered to be distinctive. There have been no further descriptions in the literature since 1999.","definition_xrefs":["Orphanet:166277"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete malformative syndrome with dentinogenesis imperfecta (obsolete MONDO:0015877)","termid":"MONDO:0015877"},{"relation_name":"excluded_subClassOf","term_name":"obsolete primary bone dysplasia with decreased bone density (obsolete MONDO:0019704)","termid":"MONDO:0019704"},{"relation_name":"is_a","term_name":"musculoskeletal system disorder","termid":"MONDO:0002081"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wormian bone-multiple fractures-dentinogenesis imperfecta-skeletal dysplasia","secondary_identifiers":["UMLS:C1858032","GARD:10290","MESH:C565734","OMIM:604922","MEDGEN:387969"],"synonyms":[{"name":"Suarez-Stickler syndrome","type":"exact"},{"name":"cortical defects wormian bones and dentinogenesis imperfecta","type":"related"},{"name":"cortical defects, WORMIAN bones, and dentinogenesis imperfecta","type":"related"}],"termid":"MONDO:0011501","xrefs":{"Monarch":{"xref_id":"0011501"}}}


id: MONDO:0008338
data:
  {"annotated_genes":["SJAG_02431","SJAG_03703"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87485,87486],"is_not":false,"summary":null,"term":"MONDO:0008338"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"distal arthrogryposis","termid":"MONDO:0019942"},{"relation_name":"is_a","term_name":"contractures, pterygia, and variable skeletal fusions syndrome","termid":"MONDO:0020937"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02431":null,"SJAG_03703":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"contractures, pterygia, and spondylocarpotarsal fusion syndrome 1A","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0081321","UMLS:C1867440","GARD:13058","MEDGEN:401232","OMIM:178110","MESH:C566739","Orphanet:65743"],"synonyms":[{"name":"DA8","type":"related"},{"name":"arthrogryposis, distal, type 8","type":"related"},{"name":"contractures, pterygia, and spondylocarpostarsal fusion syndrome 1A","type":"exact"},{"name":"distal arthrogryposis type 8","type":"exact"},{"name":"multiple pterygium syndrome, autosomal dominant","type":"exact"},{"name":"pterygium syndrome, multiple, autosomal dominant","type":"related"}],"termid":"MONDO:0008338","terms_by_termid":{"MONDO:0008338":null},"xrefs":{"Monarch":{"xref_id":"0008338"}}}


id: PBO:0074833
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 28B","termid":"PBO:0074833"}


id: GO:0140138
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process by which an organism effects a change that impairs the structure or function of an anatomical structure in another organism via the action of a venom. Venoms are injected into the prey by a bite or a sting.","definition_xrefs":["GOC:pg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disruption of anatomical structure in another organism","termid":"GO:0141060"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"venom-mediated disruption of anatomical structure in another organism","termid":"GO:0140138"}


id: GO:0090073
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the frequency, rate or extent of protein homodimerization, interacting selectively with an identical protein to form a homodimer.","definition_xrefs":["GOC:tb","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of protein homodimerization activity (obsolete GO:0090073)","termid":"GO:0090073"}


id: PBO:0016106
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial phenylalanyl-tRNA synthetase Msf1 (predicted)","termid":"PBO:0016106"}


id: PBO:0046562
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group K member 4","termid":"PBO:0046562"}


id: GO:2000288
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of myoblast proliferation.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell population proliferation","termid":"GO:0008284"},{"relation_name":"is_a","term_name":"regulation of myoblast proliferation","termid":"GO:2000291"},{"relation_name":"positively_regulates","term_name":"myoblast proliferation","termid":"GO:0051450"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of myoblast proliferation","termid":"GO:2000288"}


id: PBO:0065166
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein interacting with cyclin A1","termid":"PBO:0065166"}


id: PBO:0080612
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat domain 46","termid":"PBO:0080612"}


id: GO:0106063
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with folate and transmitting the signal from one side of the membrane to the other by activating an associated G-protein, initiating a change in cell activity.","definition_xrefs":["PMID:26906738"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor activity","termid":"GO:0004930"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"G protein-coupled folate receptor activity","synonyms":[{"name":"G-protein coupled folate receptor activity","type":"exact"},{"name":"G-protein coupled folic acid receptor activity","type":"exact"}],"termid":"GO:0106063"}


id: PBO:0059219
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"maestro heat like repeat family member 2A","termid":"PBO:0059219"}


id: PBO:0113110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eIF3j component of translation initiation factor 3 (eIF3); role in initiation as a substoichiometric component of eIF3; 60S ribosomal subunit recycling accessory factor; involved in nonsense-mediated mRNA decay (NMD); required for 20S pre-rRNA processing; post-transcriptional role in retrotransposition; absence decreases Ty1 Gag protein levels; binds eIF3 subunits Rpg1p, Prt1p and 18S rRNA; eIF3 promotes programmed stop codon readthrough; human homolog EIF3J can complement a yeast null mutant","termid":"PBO:0113110"}


id: GO:1905490
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of sensory neuron axon guidance.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:16516839"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of axon guidance","termid":"GO:1902668"},{"relation_name":"is_a","term_name":"regulation of sensory neuron axon guidance","termid":"GO:1905489"},{"relation_name":"negatively_regulates","term_name":"sensory neuron axon guidance","termid":"GO:0097374"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of sensory neuron axon guidance","synonyms":[{"name":"down regulation of sensory neuron axon guidance","type":"exact"},{"name":"down-regulation of sensory neuron axon guidance","type":"exact"},{"name":"downregulation of sensory neuron axon guidance","type":"exact"},{"name":"inhibition of sensory neuron axon guidance","type":"narrow"}],"termid":"GO:1905490"}


id: MONDO:0800145
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any non-severe combined immunodeficiency in which the cause of the disease is variation in the POLD1/POLD2 gene.","definition_xrefs":["PMID:31449058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-SCID combined immunodeficiency","termid":"MONDO:0018814"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"non-severe combined immunodeficiency due to polymerase delta deficiency","termid":"MONDO:0800145","xrefs":{"Monarch":{"xref_id":"0800145"}}}


id: PBO:0017976
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO activating enzyme E1-type Fub2 (predicted)","termid":"PBO:0017976"}


id: GO:0075299
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates, maintains or increases the frequency, rate or extent of frequency, rate or extent of zygospore formation, a process in which a thick-walled spore of some algae and fungi is formed by union of two similar sexual cells, usually serves as a resting spore, and produces the sporophytic phase.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of sexual sporulation resulting in formation of a cellular spore","termid":"GO:0043941"},{"relation_name":"is_a","term_name":"regulation of zygospore formation","termid":"GO:0075298"},{"relation_name":"positively_regulates","term_name":"zygospore formation","termid":"GO:0034296"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"positive regulation of zygospore formation","termid":"GO:0075299"}


id: MONDO:0010601
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. An instance of gynecomastia that is caused by an inherited modification of the individual's genome.","definition_xrefs":["MONDO:patterns/hereditary"],"gene_count":0,"genotype_count":0,"name":"obsolete gynecomastia, familial (obsolete MONDO:0010601)","secondary_identifiers":["MESH:C564416","OMIM:306500"],"synonyms":[{"name":"gynecomastia, familial","type":"exact"},{"name":"hereditary gynecomastia","type":"exact"}],"termid":"MONDO:0010601","xrefs":{"Monarch":{"xref_id":"0010601"}}}


id: PBO:0056618
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MECOM antisense RNA 1","termid":"PBO:0056618"}


id: PBO:0116630
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARF GTPase 4 pseudogene 3","termid":"PBO:0116630"}


id: MONDO:0010464
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare, genetic syndrome with a cerebellar malformation as major feature characterized by cerebellar vermis hypo- or aplasia, ventriculomegaly, agenesis of corpus callosum and abnormalities of the brainstem and cerebral cortex in association with ocular coloboma. Clinically, patients show hydrocephalus at birth, neonatal hypotonia with abnormal breathing pattern, ocular abnormalities with impaired vision, severe psychomotor delay, and seizures.","definition_xrefs":["Orphanet:163961"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"},{"relation_name":"is_a","term_name":"central nervous system malformation","termid":"MONDO:0020022"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0020022"}],"interesting_parent_ids":["MONDO:0020022"],"is_obsolete":false,"name":"X-linked cerebral-cerebellar-coloboma syndrome syndrome","secondary_identifiers":["OMIM:300864","MEDGEN:477118","UMLS:C3275487","GARD:17006"],"synonyms":[{"name":"X-linked cerebral-cerebellar-coloboma syndrome","type":"related"},{"name":"X-linked intellectual disability, Kroes type","type":"exact"},{"name":"cerebral-cerebellar-coloboma syndrome, X-linked","type":"related"},{"name":"cerebral-cerebellar-coloboma syndrome, X-linked, X-linked recessive","type":"exact"}],"termid":"MONDO:0010464","xrefs":{"Monarch":{"xref_id":"0010464"}}}


id: GO:0043889
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction:(2E,6E,10E)-geranylgeranyl diphosphate + sn-glycerol 1-phosphate = diphosphate + sn-3-O-(geranylgeranyl)glycerol 1-phosphate.","definition_xrefs":["PMID:12801917","PMID:17253090","PMID:8408023"],"gene_count":0,"genotype_count":0,"name":"obsolete (S)-3-O-geranylgeranylglyceryl phosphate synthase activity (obsolete GO:0043889)","synonyms":[{"name":"(S)-3-O-geranylgeranylglycerylphosphate synthase activity","type":"exact"},{"name":"(S)-GGGP synthase activity","type":"exact"},{"name":"GGGP synthase activity","type":"exact"},{"name":"GGGPS","type":"exact"}],"termid":"GO:0043889"}


id: FYPO:0006718
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the duration of protein phosphorylation is longer than normal during a cellular response to osmotic stress. All phosphorylation may be affected, or only phosphorylation of specific proteins, or even specific sites within specific proteins.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased duration of protein modification during vegetative growth","termid":"FYPO:0000548"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0002274","FYPO:0002494","FYPO:0005447"],"is_obsolete":false,"name":"increased duration of protein phosphorylation during cellular response to osmotic stress","synonyms":[{"name":"increased duration of protein phosphorylation during cellular response to osmotic stress during mitotic cell cycle","type":"related"},{"name":"increased duration of protein phosphorylation during cellular response to osmotic stress during vegetative growth","type":"exact"},{"name":"prolonged protein phosphorylation during cellular response to osmotic stress","type":"exact"}],"termid":"FYPO:0006718"}


id: GO:1904557
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of L-alanine across a membrane by means of some agent such as a transporter or a pore.","definition_xrefs":["GOC:TermGenie","GOC:kmv","GO_REF:0000069"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-alanine transport","termid":"GO:0015808"},{"relation_name":"is_a","term_name":"L-alpha-amino acid transmembrane transport","termid":"GO:1902475"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"L-alanine transmembrane transport","termid":"GO:1904557"}


id: PBO:0056170
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAP kinase activating death domain","termid":"PBO:0056170"}


id: PBO:0036406
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"folylpolyglutamate synthase Met7 (predicted)","termid":"PBO:0036406"}


id: GO:0004461
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-galactose + D-glucose = UDP + lactose.","definition_xrefs":["EC:2.4.1.22"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-galactosyltransferase activity","termid":"GO:0035250"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016757","GO:0003824"],"is_obsolete":false,"name":"lactose synthase activity","secondary_identifiers":["RHEA:12404","Reactome:R-HSA-5653878","MetaCyc:LACTOSE-SYNTHASE-RXN"],"synonyms":[{"name":"UDP-galactose-glucose galactosyltransferase activity","type":"related"},{"name":"UDP-galactose:D-glucose 4-beta-D-galactotransferase activity","type":"related"},{"name":"UDPgalactose-glucose galactosyltransferase activity","type":"related"},{"name":"UDPgalactose:D-glucose 4-beta-D-galactotransferase activity","type":"related"},{"name":"lactose synthetase activity","type":"related"},{"name":"uridine diphosphogalactose-glucose galactosyltransferase activity","type":"related"}],"termid":"GO:0004461"}


id: GO:0070170
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of tooth mineralization, the deposition of calcium salts in tooth structures.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of biomineral tissue development","termid":"GO:0070167"},{"relation_name":"regulates","term_name":"tooth mineralization","termid":"GO:0034505"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of tooth mineralization","termid":"GO:0070170"}


id: GO:1901812
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of beta-carotene.","definition_xrefs":["MetaCyc:PWY-5943","PMID:11387982","UniPathway:UPA00802","GOC:TermGenie","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carotenoid biosynthetic process","termid":"GO:0016117"},{"relation_name":"is_a","term_name":"carotene biosynthetic process","termid":"GO:0016120"},{"relation_name":"is_a","term_name":"beta-carotene metabolic process","termid":"GO:1901810"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"beta-carotene biosynthetic process","synonyms":[{"name":"beta-carotene anabolism","type":"exact"},{"name":"beta-carotene biosynthesis","type":"exact"},{"name":"beta-carotene formation","type":"exact"},{"name":"beta-carotene synthesis","type":"exact"}],"termid":"GO:1901812"}


id: PBO:0067720
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 18","termid":"PBO:0067720"}


id: GO:0031450
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of slow-twitch skeletal muscle contraction.","definition_xrefs":["GOC:dph","GOC:ef","GOC:mah","GOC:tb","GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of slow-twitch skeletal muscle fiber contraction","termid":"GO:0031449"},{"relation_name":"is_a","term_name":"negative regulation of striated muscle contraction","termid":"GO:0045988"},{"relation_name":"negatively_regulates","term_name":"slow-twitch skeletal muscle fiber contraction","termid":"GO:0031444"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of slow-twitch skeletal muscle fiber contraction","synonyms":[{"name":"down regulation of slow-twitch skeletal muscle contraction","type":"exact"},{"name":"down-regulation of slow-twitch skeletal muscle contraction","type":"exact"},{"name":"downregulation of slow-twitch skeletal muscle contraction","type":"exact"},{"name":"inhibition of slow-twitch skeletal muscle contraction","type":"narrow"},{"name":"negative regulation of slow-twitch skeletal muscle contraction","type":"exact"}],"termid":"GO:0031450"}


id: PR:O74545
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC777.06c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74545"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydrolase C777.06c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC777.06c","synonyms":[{"name":"Spom972h-SPCC777.06c","type":"exact"}],"termid":"PR:O74545"}


id: GO:0075039
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which hydrostatic pressure is increased within the symbiont appressorium to breach the cuticle of the host. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"formation of structure involved in a symbiotic process","termid":"GO:0044111"},{"relation_name":"part_of","term_name":"appressorium maturation","termid":"GO:0075035"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"establishment of turgor in appressorium","synonyms":[{"name":"establishment of turgor in symbiont appressorium on or near host","type":"exact"},{"name":"formation of turgor in appressorium","type":"exact"},{"name":"generation of turgor in appressorium","type":"exact"}],"termid":"GO:0075039"}


id: PR:P0CS86
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC1348.01 gene.","definition_xrefs":["UniProtKB:P0CS86","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPF0494 membrane protein C1348.01 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1348.01","synonyms":[{"name":"Spom972h-SPBC1348.01","type":"exact"}],"termid":"PR:P0CS86"}


id: GO:0044587
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a cellopentaose, an oligosaccharide consisting of four glucose residues resulting from hydrolysis of cellulose.","definition_xrefs":["GOC:mengo_curators","GOC:tt"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligosaccharide binding","termid":"GO:0070492"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"cellopentaose binding","termid":"GO:0044587"}


id: PBO:0034338
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-in_1_to_1_orthology_relationship_with","termid":"PBO:0034338"}


id: PBO:0045952
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EGF like domain multiple 8","termid":"PBO:0045952"}


id: PBO:0050450
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein U pseudogene 1","termid":"PBO:0050450"}


id: MONDO:0005271
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An immune response that occurs following re-exposure to an innocuous antigen, and that requires the presence of existing antibodies against that antigen. This response involves the binding of IgE to mast cells, and may worsen with repeated exposures.","definition_xrefs":["NCIT:C114476"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hypersensitivity reaction disease","termid":"MONDO:0000605"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"allergic disease","secondary_identifiers":["ICD9:995.3","MEDGEN:9370","UMLS:C0020517","SCTID:609328004","ICD9:V15.09","MESH:D006967","DOID:1205"],"synonyms":[{"name":"allergic disease or disorder","type":"exact"},{"name":"allergic form of disease or disorder","type":"exact"},{"name":"allergic form of immune system disease","type":"exact"},{"name":"allergic hypersensitivity disease","type":"related"},{"name":"allergic reaction","type":"exact"},{"name":"allergic response","type":"exact"},{"name":"allergy","type":"exact"},{"name":"disorder of type I hypersensitivity","type":"exact"},{"name":"hypersensitivity","type":"related"},{"name":"hypersensitivity reaction type I disease","type":"exact"},{"name":"type I hypersensitivity disease","type":"exact"}],"termid":"MONDO:0005271","xrefs":{"Monarch":{"xref_id":"0005271"}}}


id: GO:0035745
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that contributes to cytokine production by a T-helper 2 cell.","definition_xrefs":["CL:0000546","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CD4-positive, alpha-beta T cell cytokine production","termid":"GO:0035743"},{"relation_name":"part_of","term_name":"type 2 immune response","termid":"GO:0042092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"T-helper 2 cell cytokine production","synonyms":[{"name":"Th2 cell cytokine production","type":"exact"}],"termid":"GO:0035745"}


id: SO:0001152
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A type VIa beta turn with the following phi and psi sngles on amino acid residues 2 and 3: phi-2 = -60 degrees, psi-2 = 120 degrees, phi-3 = -90 degrees, psi-3 = 0 degrees.","definition_xrefs":["PMID:27428516"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta_turn_type_six_a","termid":"SO:0001151"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"beta_turn_type_six_a_one","synonyms":[{"name":"beta turn type six a one","type":"exact"},{"name":"type VIa1 beta turn","type":"exact"},{"name":"type VIa1 turn","type":"exact"}],"termid":"SO:0001152"}


id: GO:0004351
data:
  {"annotated_genes":["SJAG_00937"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[80016],"is_not":false,"summary":null,"term":"GO:0004351"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-glutamate = 4-aminobutanoate + CO2.","definition_xrefs":["EC:4.1.1.15"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00937":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"glutamate decarboxylase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:GLUTDECARBOX-RXN","Reactome:R-HSA-888572","RHEA:17785","Reactome:R-HSA-888577"],"synonyms":[{"name":"L-aspartate-alpha-decarboxylase activity","type":"related"},{"name":"L-glutamate 1-carboxy-lyase (4-aminobutanoate-forming)","type":"related"},{"name":"L-glutamate 1-carboxy-lyase activity","type":"related"},{"name":"L-glutamate alpha-decarboxylase activity","type":"related"},{"name":"L-glutamic acid decarboxylase activity","type":"related"},{"name":"L-glutamic decarboxylase activity","type":"related"},{"name":"aspartic alpha-decarboxylase","type":"broad"},{"name":"cysteic acid decarboxylase activity","type":"related"},{"name":"gamma-glutamate decarboxylase activity","type":"related"}],"termid":"GO:0004351","terms_by_termid":{"GO:0004351":null}}


id: PBO:0086283
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein with a role in 5'-end processing of mitochondrial RNAs; located in the mitochondrial membrane","termid":"PBO:0086283"}


id: MONDO:1012451
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"intestinal cobalamin (vitamin B12) malabsorption, non-human animal","termid":"MONDO:1011719"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intestinal cobalamin (vitamin B12) malabsorption, dog","secondary_identifiers":["OMIA:001791-9615"],"termid":"MONDO:1012451","xrefs":{"Monarch":{"xref_id":"1012451"}}}


id: GO:0015047
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: NADPH + H+ + 2 ferricytochrome c2 = NADP+ + 2 ferrocytochrome c2.","definition_xrefs":["EC:1.6.2.5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor","termid":"GO:0016653"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"NADPH-cytochrome-c2 reductase activity","secondary_identifiers":["RHEA:15237","MetaCyc:NADPH--CYTOCHROME-C2-REDUCTASE-RXN"],"synonyms":[{"name":"NADPH:ferricytochrome-c2 oxidoreductase activity","type":"related"},{"name":"cytochrome c2 reductase (reduced nicotinamide adinine dinucleotide phosphate, NADPH)","type":"related"},{"name":"reductase, cytochrome c2 (reduced nicotinamide adenine dinucleotide phosphate)","type":"related"}],"termid":"GO:0015047"}


id: PR:O59811
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A zinc finger protein 622 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04600","PANTHER:PTHR13182:SF7","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytoplasmic 60S subunit biogenesis factor SPCC550.15c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC550.15c","secondary_identifiers":["UniProtKB:O59811"],"synonyms":[{"name":"Spom972h-ZNF622","type":"exact"},{"name":"pre-60S factor REI1 homolog (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O59811"}


id: PBO:0065161
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prion like protein doppel","termid":"PBO:0065161"}


id: GO:0051731
data:
  {"annotated_genes":["SJAG_02680","SJAG_01979","SJAG_03789","SJAG_01791","SJAG_00956"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71874],"is_not":false,"summary":null,"term":"GO:0051731"},{"annotations":[88471,71103],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046404"},{"annotations":[93812],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051736"},{"annotations":[61792],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051730"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: NTP + 5'-dephosphopolynucleotide = NDP + 5'-phosphopolynucleotide. The polynucleotide may be DNA or RNA.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"},{"relation_name":"is_a","term_name":"nucleobase-containing compound kinase activity","termid":"GO:0019205"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00956":null,"SJAG_01791":null,"SJAG_01979":null,"SJAG_02680":null,"SJAG_03789":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016301","GO:0016740","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"polynucleotide 5'-hydroxyl-kinase activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"5'-dephosphopolynucleotide kinase activity","type":"exact"},{"name":"5'-hydroxyl polynucleotide kinase activity","type":"exact"},{"name":"PNK","type":"related"},{"name":"polynucleotide 5'-hydroxy-kinase activity","type":"exact"},{"name":"polynucleotide 5'-hydroxyl kinase (phosphorylating) activity","type":"exact"},{"name":"polynucleotide kinase activity","type":"broad"}],"termid":"GO:0051731","terms_by_termid":{"GO:0046404":null,"GO:0051730":null,"GO:0051731":null,"GO:0051736":null}}


id: GO:1900698
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of o-orsellinic acid biosynthetic process.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of ketone metabolic process","termid":"GO:0010565"},{"relation_name":"is_a","term_name":"regulation of small molecule metabolic process","termid":"GO:0062012"},{"relation_name":"is_a","term_name":"regulation of secondary metabolite biosynthetic process","termid":"GO:1900376"},{"relation_name":"regulates","term_name":"o-orsellinic acid biosynthetic process","termid":"GO:1900584"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0019748","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"regulation of o-orsellinic acid biosynthetic process","synonyms":[{"name":"regulation of o-orsellinic acid anabolism","type":"exact"},{"name":"regulation of o-orsellinic acid biosynthesis","type":"exact"},{"name":"regulation of o-orsellinic acid formation","type":"exact"},{"name":"regulation of o-orsellinic acid synthesis","type":"exact"}],"termid":"GO:1900698"}


id: PBO:0048148
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FXYD domain containing ion transport regulator 7","termid":"PBO:0048148"}


id: PBO:0044640
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decapping mRNA 2","termid":"PBO:0044640"}


id: PBO:0070511
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L6 pseudogene 10","termid":"PBO:0070511"}


id: GO:0009909
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of flower development.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of post-embryonic development","termid":"GO:0048580"},{"relation_name":"is_a","term_name":"regulation of shoot system development","termid":"GO:0048831"},{"relation_name":"is_a","term_name":"regulation of reproductive process","termid":"GO:2000241"},{"relation_name":"regulates","term_name":"flower development","termid":"GO:0009908"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of flower development","termid":"GO:0009909"}


id: PBO:0069440
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 705, pseudogene","termid":"PBO:0069440"}


id: GO:0002302
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an antigenically naive CD8-positive, alpha-beta T cell acquires the specialized features of an effector, regulatory, or memory T cell as part of an immune response. Effector T cells include cells which provide T cell help or exhibit cytotoxicity towards other cells.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-beta T cell differentiation involved in immune response","termid":"GO:0002293"},{"relation_name":"is_a","term_name":"CD8-positive, alpha-beta T cell differentiation","termid":"GO:0043374"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"CD8-positive, alpha-beta T cell differentiation involved in immune response","synonyms":[{"name":"CD8-positive, alpha-beta T cell differentiation during immune response","type":"related"},{"name":"CD8-positive, alpha-beta T lymphocyte differentiation during immune response","type":"related"},{"name":"CD8-positive, alpha-beta T-cell differentiation during immune response","type":"related"},{"name":"CD8-positive, alpha-beta T-lymphocyte differentiation during immune response","type":"related"},{"name":"CD8-positive, alpha-beta intraepithelial T cell development","type":"related"}],"termid":"GO:0002302"}


id: GO:0007085
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete nuclear membrane vesicle binding to chromatin (obsolete GO:0007085)","synonyms":[{"name":"nuclear membrane vesicle binding to chromatin","type":"exact"}],"termid":"GO:0007085"}


id: PBO:0079143
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TSPAN5 divergent transcript","termid":"PBO:0079143"}


id: PBO:0047527
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FYVE, RhoGEF and PH domain containing 1","termid":"PBO:0047527"}


id: PBO:0067770
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 70","termid":"PBO:0067770"}


id: GO:0046175
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of aldonic acid, a monocarboxylic acid with a chain of three or more carbon atoms, derived from an aldose by oxidation of the aldehydic group.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldonic acid metabolic process","termid":"GO:0019520"},{"relation_name":"is_a","term_name":"monocarboxylic acid biosynthetic process","termid":"GO:0072330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0005975"],"is_obsolete":false,"name":"aldonic acid biosynthetic process","synonyms":[{"name":"aldonic acid anabolism","type":"exact"},{"name":"aldonic acid biosynthesis","type":"exact"},{"name":"aldonic acid formation","type":"exact"},{"name":"aldonic acid synthesis","type":"exact"}],"termid":"GO:0046175"}


id: PBO:0070779
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L12 pseudogene 9","termid":"PBO:0070779"}


id: PBO:0090055
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ASTRA complex subunit, Armadillo-type fold Tti1","termid":"PBO:0090055"}


id: MONDO:0014925
data:
  {"annotated_genes":["SJAG_01184"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87488],"is_not":false,"summary":null,"term":"MONDO:0014925"}]},"cv_name":"mondo","definition":"Any epilepsy, familial focal, with variable foci in which the cause of the disease is a mutation in the NPRL3 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial focal epilepsy with variable foci","termid":"MONDO:0020310"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01184":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"epilepsy, familial focal, with variable foci 3","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:934675","UMLS:C4310708","OMIM:617118","DOID:0081423","GARD:18204"],"synonyms":[{"name":"FFEVF3","type":"exact"},{"name":"NPRL3 epilepsy, familial focal, with variable foci","type":"exact"},{"name":"epilepsy, familial focal, with variable foci 3","type":"exact"},{"name":"epilepsy, familial focal, with variable foci 3; FFEVF3","type":"exact"},{"name":"epilepsy, familial focal, with variable foci caused by mutation in NPRL3","type":"exact"},{"name":"epilepsy, familial focal, with variable foci type 3","type":"exact"}],"termid":"MONDO:0014925","terms_by_termid":{"MONDO:0014925":null},"xrefs":{"Monarch":{"xref_id":"0014925"}}}


id: PBO:0003995
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chaperonin-containing T-complex alpha subunit Cct1","termid":"PBO:0003995"}


id: MONDO:0010441
data:
  {"annotated_genes":["SJAG_02855"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87253],"is_not":false,"summary":null,"term":"MONDO:0010441"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02855":null},"genotype_count":0,"is_obsolete":false,"name":"CK syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0111898","OMIM:300831","Orphanet:251383","UMLS:C3151781","GARD:17210","MEDGEN:463131"],"synonyms":[{"name":"CK syndrome","type":"exact"},{"name":"CK syndrome, X-linked recessive","type":"exact"},{"name":"X-linked intellectual disability-microcephaly-cortical malformation-thin habitus syndrome","type":"exact"},{"name":"intellectual disability, X-linked, with thin body habitus and cortical malformation","type":"related"},{"name":"mental retardation, X-linked, with thin body habitus and cortical malformation","type":"related"}],"termid":"MONDO:0010441","terms_by_termid":{"MONDO:0010441":null},"xrefs":{"Monarch":{"xref_id":"0010441"}}}


id: PBO:0088070
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ubiquitin-specific protease; situated in the base subcomplex of the 26S proteasome, releases free ubiquitin from branched polyubiquitin chains en bloc, rather than from the distal tip of the chain; negatively regulates degradation of ubiquitinated proteins by the proteasome; works in opposition to Hul5p polyubiquitin elongation activity; mutant has aneuploidy tolerance; human homolog UBP14 complements yeast null mutant","termid":"PBO:0088070"}


id: PBO:0000717
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.2.1.39","termid":"PBO:0000717"}


id: PBO:0000566
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyperammonemia","termid":"PBO:0000566"}


id: PBO:0057744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1539","termid":"PBO:0057744"}


id: PBO:0043155
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"capicua transcriptional repressor pseudogene 23","termid":"PBO:0043155"}


id: GO:0097057
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex comprising tumor necrosis factor (TNF) receptor-associated factor 2 (TRAF2) and glutathione S-transferase pi 1 (GSTP1). This complex is thought to disrupt the TNF signaling cascade, thus down-regulating inflammatory responses.","definition_xrefs":["PMID:16636664","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"TRAF2-GSTP1 complex","termid":"GO:0097057"}


id: GO:0016502
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a nucleotide and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity. A nucleotide is a compound that consists of a nucleoside esterified with a phosphate molecule.","definition_xrefs":["GOC:signaling","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane signaling receptor activity","termid":"GO:0004888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"nucleotide receptor activity","termid":"GO:0016502"}


id: PBO:0056207
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAGE family member B2","termid":"PBO:0056207"}


id: GO:0097692
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H3 by addition of one methyl group to lysine at position 4 of the histone.","definition_xrefs":["GOC:jh2","PMID:26320581"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H3-K4 monomethylation (obsolete GO:0097692)","termid":"GO:0097692"}


id: PBO:0082826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Conserved phosphatase acting as a metabolite repair enzyme; shows specific dephosphorylating activity on two side-products of central carbohydrate metabolism, 2-phosphoglycolate and 4-phosphoerythronate; alkaline phosphatase specific for p-nitrophenyl phosphate; also has protein phosphatase activity; human ortholog PGP shows similar substrate specificity, deletion causes similar metabolite accumulation phenotypes, suggesting conserved role in eliminating glycolytic byproducts","termid":"PBO:0082826"}


id: GO:0014915
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the velocity of muscle filament sliding, and consequently contributes to the regulation of the velocity of shortening of skeletal muscle contraction.","definition_xrefs":["GOC:tb","GOC:mtg_muscle","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of muscle filament sliding involved in regulation of the velocity of shortening in skeletal muscle contraction","termid":"GO:0014880"},{"relation_name":"is_a","term_name":"regulation of muscle filament sliding speed","termid":"GO:0032972"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of muscle filament sliding speed involved in regulation of the velocity of shortening in skeletal muscle contraction","termid":"GO:0014915"}


id: PBO:0088207
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Zn-ribbon protein that co-purifies with Dph1 and Dph2; forms a complex required for synthesis of diphthamide on translation factor eEF2 and with Elongator subunits Iki3p, Elp2p, and Elp3p; involved in modification of wobble nucleosides in tRNAs; forms a stable heterodimer with Ats1p","termid":"PBO:0088207"}


id: PBO:0091291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation elongation factor EF-1 alpha (eEF1A) lysine 390 methyltransferase Efm6","termid":"PBO:0091291"}


id: MONDO:0012543
data:
  {"annotated_genes":["SJAG_02848","SJAG_02384"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86027,86028],"is_not":false,"summary":null,"term":"MONDO:0012543"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant optic atrophy","termid":"MONDO:0020250"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02384":null,"SJAG_02848":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0005328","MONDO:0005559"],"is_obsolete":false,"name":"optic atrophy 5","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:377837","GARD:10201","MESH:C537126","OMIM:610708","UMLS:C1853139","DOID:0111438"],"synonyms":[{"name":"OPA5","type":"exact"},{"name":"optic atrophy 5","type":"exact"}],"termid":"MONDO:0012543","terms_by_termid":{"MONDO:0012543":null},"xrefs":{"Monarch":{"xref_id":"0012543"}}}


id: PBO:0041426
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 8 open reading frame 48","termid":"PBO:0041426"}


id: GO:0030641
data:
  {"annotated_genes":["SJAG_01669","SJAG_00136","SJAG_02716","SJAG_04955","SJAG_05294","SJAG_00516","SJAG_01397","SJAG_00212","SJAG_04616","SJAG_03962","SJAG_02470","SJAG_04258","SJAG_01817","SJAG_01129","SJAG_02023","SJAG_00301","SJAG_01913"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[100834],"is_not":false,"summary":null,"term":"GO:0030641"},{"annotations":[73577,71151,78244,71776],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051453"},{"annotations":[71353,73334,96166,101956,73001,74360,100339,104227,95985,88378,78864,80415],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007035"}]},"cv_name":"biological_process","definition":"Any process involved in the maintenance of an internal equilibrium of hydrogen ions (protons) within a cell or between a cell and its external environment.","definition_xrefs":["GOC:dph","GOC:mah","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of pH","termid":"GO:0006885"},{"relation_name":"is_a","term_name":"intracellular monoatomic cation homeostasis","termid":"GO:0030003"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00136":null,"SJAG_00212":null,"SJAG_00301":null,"SJAG_00516":null,"SJAG_01129":null,"SJAG_01397":null,"SJAG_01669":null,"SJAG_01817":null,"SJAG_01913":null,"SJAG_02023":null,"SJAG_02470":null,"SJAG_02716":null,"SJAG_03962":null,"SJAG_04258":null,"SJAG_04616":null,"SJAG_04955":null,"SJAG_05294":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cellular pH","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"cellular hydrogen ion homeostasis","type":"exact"},{"name":"proton homeostasis","type":"exact"}],"termid":"GO:0030641","terms_by_termid":{"GO:0007035":null,"GO:0030641":null,"GO:0051453":null}}


id: MONDO:0006827
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A syndrome caused by an infarct in the vertebral or posterior inferior cerebellar artery. It is characterized by sensory defects affecting the same side of the face as the infarct and the opposite side of the trunk as the infarct. Patients experience difficulty swallowing and/or speaking.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"brain stem infarction","termid":"MONDO:0006686"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lateral medullary syndrome","secondary_identifiers":["EFO:1001011","DOID:3522","MedDRA:10024033","ICD9:437.1","MESH:D014854","SCTID:78569004","icd11.foundation:1606151456","UMLS:C0043019","MEDGEN:53057","NCIT:C84807"],"synonyms":[{"name":"Lateral medullary syndrome","type":"related"},{"name":"PICA syndrome","type":"related"},{"name":"Posterior inferior cerebellar artery syndrome","type":"exact"},{"name":"Vertebral artery syndrome","type":"related"},{"name":"Wallenberg syndrome","type":"exact"},{"name":"Wallenberg's syndrome","type":"exact"}],"termid":"MONDO:0006827","xrefs":{"Monarch":{"xref_id":"0006827"}}}


id: PBO:0084487
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Meiosis-specific prospore protein; required for meiotic spindle pole body duplication and separation; required to produce bending force necessary for proper prospore membrane assembly during sporulation; has similarity to phospholipase B","termid":"PBO:0084487"}


id: MONDO:1012250
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spastic lameness, non-human animal","termid":"MONDO:1011794"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spastic lameness, cattle","secondary_identifiers":["OMIA:000926-9913"],"termid":"MONDO:1012250","xrefs":{"Monarch":{"xref_id":"1012250"}}}


id: MONDO:0859003
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inborn disorder of purine metabolism","termid":"MONDO:0019236"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019254"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0019254"],"is_obsolete":false,"name":"PAICS deficiency","secondary_identifiers":["Orphanet:633099"],"termid":"MONDO:0859003","xrefs":{"Monarch":{"xref_id":"0859003"}}}


id: PR:O13339-1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A telomerase reverse transcriptase (Schizosaccharomyces pombe 972h-) that is a translation product of some mRNA giving rise to a protein with the amino acid sequence represented by UniProtKB:O13339-1.","definition_xrefs":["PRO:DNx","UniProtKB:O13339"],"direct_ancestors":[{"relation_name":"is_a","term_name":"telomerase reverse transcriptase (Schizosaccharomyces pombe 972h-)","termid":"PR:O13339"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"telomerase reverse transcriptase isoform 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1002.01","secondary_identifiers":["UniProtKB:O13339-1"],"synonyms":[{"name":"Spom972h-TERT/iso:1","type":"exact"}],"termid":"PR:O13339-1"}


id: PBO:0088617
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MTREC (exosome adaptor) complex zf-C2H2 type zinc finger subunit Pir2","termid":"PBO:0088617"}


id: PBO:0079590
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme E2 D3 pseudogene 2","termid":"PBO:0079590"}


id: PBO:0047342
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibrillin 3","termid":"PBO:0047342"}


id: PBO:0059408
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein S34","termid":"PBO:0059408"}


id: PBO:0049359
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"general transcription factor IIi pseudogene 17","termid":"PBO:0049359"}


id: GO:0043603
data:
  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chemical reactions and pathways involving an amide, any derivative of an oxoacid in which an acidic hydroxy group has been replaced by an amino or substituted amino group, as carried out by individual cells.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic 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id: GO:0047562
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (3R)-3-hydroxy-L-aspartate = glycine + glyoxylate.","definition_xrefs":["EC:4.1.3.14","RHEA:14377"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxo-acid-lyase activity","termid":"GO:0016833"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"3-hydroxyaspartate aldolase activity","secondary_identifiers":["MetaCyc:RXN-11769","KEGG_REACTION:R00478"],"synonyms":[{"name":"erythro-3-hydroxy-L(s)-aspartate glyoxylate-lyase activity","type":"related"},{"name":"erythro-3-hydroxy-Ls-aspartate glyoxylate-lyase (glycine-forming)","type":"related"},{"name":"erythro-3-hydroxy-Ls-aspartate glyoxylate-lyase activity","type":"related"},{"name":"erythro-beta-hydroxyaspartate aldolase activity","type":"related"},{"name":"erythro-beta-hydroxyaspartate glycine-lyase activity","type":"related"}],"termid":"GO:0047562"}


id: PBO:0087792
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO E3 ligase; required for synaptonemal complex formation; localizes to synapsis initiation sites on meiotic chromosomes; associates with centromeres early in meiosis, then with chromosome axes and finally with double-strand break sites that are engaged in repair by crossovers; potential Cdc28p substrate","termid":"PBO:0087792"}


id: FYPO:0006296
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which negative regulation of transcription by glucose (glucose repression) occurs to a greater extent than normal. Specific genes that are normally not transcribed in the presence of glucose are not derepressed in the mutant under conditions that derepress transcription in wild type cells.","definition_xrefs":["PMID:20139237","GO:0045014","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal negative regulation of transcription by glucose","termid":"FYPO:0000044"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0000298"],"is_obsolete":false,"name":"increased negative regulation of transcription by glucose","synonyms":[{"name":"glucose repression defects","type":"related"},{"name":"increased glucose repression","type":"exact"},{"name":"increased glucose repression during vegetative growth","type":"exact"},{"name":"increased negative regulation of transcription by glucose during mitotic cell cycle","type":"related"},{"name":"increased negative regulation of transcription by glucose during vegetative growth","type":"exact"},{"name":"increased transcription of glucose starvation gene during vegetative growth","type":"related"}],"termid":"FYPO:0006296"}


id: PBO:0080114
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UV radiation resistance associated","termid":"PBO:0080114"}


id: PBO:0056429
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MARK2 pseudogene 2","termid":"PBO:0056429"}


id: PBO:0063216
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protocadherin 1","termid":"PBO:0063216"}


id: GO:0048319
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the axial mesoderm are generated and organized.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesoderm morphogenesis","termid":"GO:0048332"},{"relation_name":"part_of","term_name":"axial mesoderm development","termid":"GO:0048318"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"axial mesoderm morphogenesis","termid":"GO:0048319"}


id: GO:0072280
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Coordinated organization of groups of cells in the plane of an epithelium that contributes to the shaping of a nephron in the metanephros.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment of planar polarity involved in nephron morphogenesis","termid":"GO:0072046"},{"relation_name":"part_of","term_name":"metanephric nephron morphogenesis","termid":"GO:0072273"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"establishment of planar polarity involved in metanephric nephron morphogenesis","synonyms":[{"name":"establishment of planar cell polarity involved in metanephric nephron morphogenesis","type":"narrow"}],"termid":"GO:0072280"}


id: PBO:0076197
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO2 pseudogene 6","termid":"PBO:0076197"}


id: PBO:0039557
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ANKRD49 pseudogene 4","termid":"PBO:0039557"}


id: PBO:0048098
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferritin light chain pseudogene 19","termid":"PBO:0048098"}


id: GO:0006123
data:
  {"annotated_genes":["SJAG_02504","SJAG_07007","SJAG_MIT20","SJAG_01190","SJAG_02744","SJAG_00976","SJAG_05629","SJAG_MIT04","SJAG_01355","SJAG_MIT13","SJAG_01077"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72377,74650,76632,79218,108598,114530,114959,115759,119327,119349,119377],"is_not":false,"summary":null,"term":"GO:0006123"}]},"cv_name":"biological_process","definition":"The transfer of electrons from cytochrome c to oxygen that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex IV.","definition_xrefs":["ISBN:0716731363"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aerobic electron transport chain","termid":"GO:0019646"},{"relation_name":"part_of","term_name":"mitochondrial ATP synthesis coupled electron transport","termid":"GO:0042775"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00976":null,"SJAG_01077":null,"SJAG_01190":null,"SJAG_01355":null,"SJAG_02504":null,"SJAG_02744":null,"SJAG_05629":null,"SJAG_07007":null,"SJAG_MIT04":null,"SJAG_MIT13":null,"SJAG_MIT20":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0008150","GO:0006091"],"is_obsolete":false,"name":"mitochondrial electron transport, cytochrome c to oxygen","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"complex IV (reduction of O2)","type":"related"}],"termid":"GO:0006123","terms_by_termid":{"GO:0006123":null}}


id: FYPO:0007238
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of two crossovers within a given interval during meiosis I is higher than normal.","definition_xrefs":["PomBase:mah","PMID:30217891"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal meiotic recombination","termid":"FYPO:0000008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000293","FYPO:0005447","FYPO:0000631","FYPO:0001985"],"is_obsolete":false,"name":"increased meiotic double crossover formation","synonyms":[{"name":"decreased crossover interference","type":"exact"}],"termid":"FYPO:0007238"}


id: MONDO:0007633
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Friedreich ataxia, so-called, with optic atrophy and sensorineural deafness","secondary_identifiers":["MEDGEN:376920","OMIM:136600","MESH:C564999","UMLS:C1850982"],"synonyms":[{"name":"Friedreich ataxia, so-called, with optic atrophy and sensorineural deafness","type":"exact"}],"termid":"MONDO:0007633","xrefs":{"Monarch":{"xref_id":"0007633"}}}


id: GO:0070298
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction via a phosphorelay signal transduction system.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of phosphorelay signal transduction system","termid":"GO:0070297"},{"relation_name":"is_a","term_name":"negative regulation of intracellular signal transduction","termid":"GO:1902532"},{"relation_name":"negatively_regulates","term_name":"phosphorelay signal transduction system","termid":"GO:0000160"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of phosphorelay signal transduction system","synonyms":[{"name":"down regulation of two-component signal transduction","type":"exact"},{"name":"down-regulation of two-component signal transduction","type":"exact"},{"name":"downregulation of two-component signal transduction","type":"exact"},{"name":"inhibition of two-component signal transduction","type":"narrow"},{"name":"negative regulation of histidyl-aspartyl phosphorelay","type":"exact"},{"name":"negative regulation of two-component signal transduction system (phosphorelay)","type":"narrow"}],"termid":"GO:0070298"}


id: MONDO:1010539
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Megacolon that occurs in rabbit.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"megacolon, non-human animal","termid":"MONDO:1010039"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"megacolon, rabbit","secondary_identifiers":["OMIA:000629-9986"],"termid":"MONDO:1010539","xrefs":{"Monarch":{"xref_id":"1010539"}}}


id: PBO:0075214
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syntrophin gamma 2","termid":"PBO:0075214"}


id: PBO:0049893
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HECT and RLD domain containing E3 ubiquitin protein ligase 3","termid":"PBO:0049893"}


id: PBO:0040288
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase Na+/K+ transporting subunit beta 3","termid":"PBO:0040288"}


id: GO:0070189
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving kynurenine, the amino acid 3-(2-aminobenzoyl)-alanine.","definition_xrefs":["GOC:mah","GOC:rph","CHEBI:28683"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ketone metabolic process","termid":"GO:0042180"},{"relation_name":"is_a","term_name":"benzene-containing compound metabolic process","termid":"GO:0042537"},{"relation_name":"is_a","term_name":"non-proteinogenic amino acid metabolic process","termid":"GO:0170041"},{"relation_name":"is_a","term_name":"alpha-amino acid metabolic process","termid":"GO:1901605"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"kynurenine metabolic process","synonyms":[{"name":"kynurenine metabolism","type":"exact"}],"termid":"GO:0070189"}


id: GO:0045178
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The region of a cell situated near the base. For example, in a polarized epithelial cell, the basal surface rests on the basal lamina that separates the epithelium from other tissue.","definition_xrefs":["ISBN:0815316194","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"basal part of cell","termid":"GO:0045178"}


id: MONDO:0009769
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Oculopalatocerebral syndrome is characterized by the association of four anomalies: intellectual deficit, microcephaly, palate anomalies and ocular abnormalities.","definition_xrefs":["Orphanet:2714"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oculo-palato-cerebral syndrome","secondary_identifiers":["MEDGEN:338025","OMIM:257910","GARD:16606","SCTID:722055008","MESH:C564935","UMLS:C1850338"],"synonyms":[{"name":"OPC dwarfism","type":"related"},{"name":"oculo-palato-cerebral dwarfism","type":"exact"},{"name":"oculopalatocerebral dwarfism","type":"related"},{"name":"oculopalatocerebral syndrome","type":"related"}],"termid":"MONDO:0009769","xrefs":{"Monarch":{"xref_id":"0009769"}}}


id: PBO:0083525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF RSM7/YJR113C","termid":"PBO:0083525"}


id: PR:O94634
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A threonine dehydratase biosynthetic that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03919","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"threonine dehydratase, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1677.03c","secondary_identifiers":["UniProtKB:O94634"],"synonyms":[{"name":"Spom972h-ilvA","type":"exact"},{"name":"threonine deaminase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94634"}


id: GO:0061666
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of UFM1 to a substrate protein via the reaction X-UFM1 + S = X + S-UFM1, where X is either an E2 or E3 enzyme, the X-UFM1 linkage is a thioester bond, and the S-UFM1 linkage is an isopeptide bond between the C-terminal amino acid of UFM1 and the epsilon-amino group of lysine residues in the substrate.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ubiquitin-like protein ligase activity","termid":"GO:0061659"},{"relation_name":"is_a","term_name":"UFM1 transferase activity","termid":"GO:0071568"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0019787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0003674","GO:0140096","GO:0016746","GO:0019787"],"is_obsolete":false,"name":"UFM1 ligase activity","synonyms":[{"name":"E3","type":"broad"}],"termid":"GO:0061666"}


id: GO:0032571
data:
  {"annotated_genes":["SJAG_01162"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[105546],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036245"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin K stimulus.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to vitamin","termid":"GO:0033273"},{"relation_name":"is_a","term_name":"response to ketone","termid":"GO:1901654"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01162":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to vitamin K","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0032571","terms_by_termid":{"GO:0036245":null}}


id: MONDO:0035776
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"coagulation protein disease","termid":"MONDO:0002242"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"combined deficiency of factor VII and factor X","secondary_identifiers":["UMLS:C5681529","GARD:22418","MEDGEN:1843297","Orphanet:600691"],"termid":"MONDO:0035776","xrefs":{"Monarch":{"xref_id":"0035776"}}}


id: PBO:0083517
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF MND1/YGL183C","termid":"PBO:0083517"}


id: GO:0140836
data:
  {"annotated_genes":["SJAG_00342","SJAG_00150"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[94680,106375],"is_not":false,"summary":null,"term":"GO:0140836"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + RNA polymerase II large subunit CTD heptapeptide repeat (consensus YSPTSPS) = ADP + H+ + RNA polymerase II large subunit phosphoserine (position 5).","definition_xrefs":["PMID:28248323"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II CTD heptapeptide repeat kinase activity","termid":"GO:0008353"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00150":null,"SJAG_00342":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016301","GO:0003674","GO:0003824","GO:0140096","GO:0016740","GO:0004672"],"is_obsolete":false,"name":"RNA polymerase II CTD heptapeptide repeat S5 kinase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"RNA polymerase II C-terminal domain S5 kinase activity","type":"exact"}],"termid":"GO:0140836","terms_by_termid":{"GO:0140836":null}}


id: PBO:0030738
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-enlarged_nucleus_during_nitrogen_starvation","termid":"PBO:0030738"}


id: GO:1905436
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of histone H3-K4 trimethylation.","definition_xrefs":["PMID:27541139","GOC:TermGenie","GO_REF:0000058"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of histone H3-K4 trimethylation (obsolete GO:1905436)","synonyms":[{"name":"down regulation of histone H3-K4 trimethylation","type":"exact"},{"name":"down-regulation of histone H3-K4 trimethylation","type":"exact"},{"name":"downregulation of histone H3-K4 trimethylation","type":"exact"},{"name":"inhibition of histone H3-K4 trimethylation","type":"narrow"}],"termid":"GO:1905436"}


id: PBO:0054102
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1461","termid":"PBO:0054102"}


id: MONDO:0005886
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Infection of the mucosal lining of the mouth with the fungus Candida albicans.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"candidiasis","termid":"MONDO:0002026"},{"relation_name":"is_a","term_name":"mouth disorder","termid":"MONDO:0006858"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oral candidiasis","secondary_identifiers":["UMLS:C0006849","DOID:14262","EFO:0007406","ICD9:112.0","MEDGEN:14300","MESH:D002180","SCTID:79740000","NCIT:C28137"],"synonyms":[{"name":"candidiasis of mouth","type":"exact"},{"name":"mouth candidiasis","type":"exact"},{"name":"oral moniliasis","type":"exact"},{"name":"thrush","type":"broad"},{"name":"thrush, oral","type":"exact"}],"termid":"MONDO:0005886","xrefs":{"Monarch":{"xref_id":"0005886"}}}


id: PBO:0091722
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WW domain containing conserved fungal protein Wwm1","termid":"PBO:0091722"}


id: GO:1901312
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of gene expression involved in extracellular matrix organization.","definition_xrefs":["GOC:BHF","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of gene expression involved in extracellular matrix organization (obsolete GO:1901312)","synonyms":[{"name":"down regulation of expression of extracellular matrix proteins","type":"exact"},{"name":"down regulation of extracellular matrix protein production","type":"related"},{"name":"down regulation of gene expression involved in extracellular matrix organization","type":"exact"},{"name":"down-regulation of expression of extracellular matrix proteins","type":"exact"},{"name":"down-regulation of extracellular matrix protein production","type":"related"},{"name":"down-regulation of gene expression involved in extracellular matrix organization","type":"exact"},{"name":"downregulation of expression of extracellular matrix proteins","type":"exact"},{"name":"downregulation of extracellular matrix protein production","type":"related"},{"name":"downregulation of gene expression involved in extracellular matrix organization","type":"exact"},{"name":"inhibition of expression of extracellular matrix proteins","type":"exact"},{"name":"inhibition of extracellular matrix protein production","type":"related"},{"name":"inhibition of gene expression involved in extracellular matrix organization","type":"narrow"},{"name":"negative regulation of expression of extracellular matrix proteins","type":"exact"},{"name":"negative regulation of extracellular matrix protein production","type":"related"}],"termid":"GO:1901312"}


id: FYPO:0001671
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of GDP binding by a gene product (usually a protein) in a mutant is decreased. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal GDP binding","termid":"FYPO:0001670"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000652","FYPO:0000707"],"is_obsolete":false,"name":"decreased GDP binding","synonyms":[{"name":"reduced GDP binding","type":"exact"}],"termid":"FYPO:0001671"}


id: GO:0051518
data:
  {"annotated_genes":["SJAG_03581","SJAG_02392","SJAG_00514"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94914,96180,90204],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051519"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of bipolar cell growth, polarized growth from both ends of a cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of unidimensional cell growth","termid":"GO:0051512"},{"relation_name":"is_a","term_name":"regulation of bipolar cell growth","termid":"GO:0051516"},{"relation_name":"positively_regulates","term_name":"bipolar cell growth","termid":"GO:0042815"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00514":null,"SJAG_02392":null,"SJAG_03581":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of bipolar cell growth","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"stimulation of bipolar cell growth","type":"narrow"},{"name":"up regulation of bipolar cell growth","type":"exact"},{"name":"up-regulation of bipolar cell growth","type":"exact"},{"name":"upregulation of bipolar cell growth","type":"exact"}],"termid":"GO:0051518","terms_by_termid":{"GO:0051519":null}}


id: PBO:0004577
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"imidazoleglycerol-phosphate synthase (predicted)","termid":"PBO:0004577"}


id: PBO:0083950
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Gamma subunit of the translation initiation factor eIF2; involved in the identification of the start codon; binds GTP when forming the ternary complex with GTP and tRNAi-Met; mutations in human ortholog cause X-linked intellectual disability (XLID) syndrome","termid":"PBO:0083950"}


id: GO:0120189
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the controlled release of bile acid from a cell or a tissue.","definition_xrefs":["GOC:BHF","PMID:22767443","GOC:rph","GOC:BHF_miRNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of organic acid transport","termid":"GO:0032892"},{"relation_name":"is_a","term_name":"positive regulation of secretion","termid":"GO:0051047"},{"relation_name":"is_a","term_name":"regulation of bile acid secretion","termid":"GO:0120188"},{"relation_name":"positively_regulates","term_name":"bile acid secretion","termid":"GO:0032782"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of bile acid secretion","termid":"GO:0120189"}


id: FYPO:0002556
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the medial cortex of a cell is decreased, and the protein is instead detected distributed throughout the cell cortex of half of the cell nearer the non-growing end. There may be little or no protein detected at the medial cortex.","definition_xrefs":["PomBase:al","PomBase:mah","PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to medial cortex, with protein distributed in cell cortex, during vegetative growth","termid":"FYPO:0006638"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"has_part","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"decreased protein localization to medial cortex, with protein distributed in cell cortex near non-growing end, during vegetative growth","synonyms":[{"name":"abolished protein localization to medial cortex during vegetative growth, with protein distributed in cortex of non-growing half of cell","type":"narrow"},{"name":"decreased protein localisation to medial cortex during vegetative growth, with protein distributed in cell cortex near non-growing end","type":"exact"},{"name":"decreased protein localization to medial cortex during vegetative growth, with protein distributed in cell cortex near non-growing end","type":"exact"},{"name":"decreased protein localization to medial cortex during vegetative growth, with protein distributed in cell cortex near non-growing end, during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to medial cortex during vegetative growth, with protein distributed in cortex of non-growing half of cell","type":"exact"},{"name":"decreased protein localization to medial ring, with protein distributed in cell cortex near non-growing end, during vegetative growth","type":"exact"},{"name":"reduced protein localization to medial cortex during vegetative growth, with protein distributed in cell cortex near non-growing end","type":"exact"}],"termid":"FYPO:0002556"}


id: PATO:0000376
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000376 flavor value (obsolete PATO:0000376)","termid":"PATO:0000376"}


id: PBO:0067181
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 239, pseudogene","termid":"PBO:0067181"}


id: MONDO:0012010
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"excluded_subClassOf","term_name":"coronary artery disorder","termid":"MONDO:0005010"},{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coronary heart disease, susceptibility to, 4","secondary_identifiers":["MEDGEN:374891","OMIM:608318","UMLS:C1842258"],"synonyms":[{"name":"Chds4","type":"related"},{"name":"coronary heart disease, susceptibility to, 4","type":"exact"},{"name":"coronary heart disease, susceptibility to, type 4","type":"exact"}],"termid":"MONDO:0012010","xrefs":{"Monarch":{"xref_id":"0012010"}}}


id: GO:1900267
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of substance P receptor binding.","definition_xrefs":["GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of substance P receptor binding (obsolete GO:1900267)","synonyms":[{"name":"activation of neurokinin-1 receptor binding","type":"exact"},{"name":"activation of substance P receptor binding","type":"narrow"},{"name":"activation of substance P receptor ligand","type":"narrow"},{"name":"positive regulation of neurokinin-1 receptor binding","type":"exact"},{"name":"positive regulation of substance P receptor ligand","type":"narrow"},{"name":"up regulation of neurokinin-1 receptor binding","type":"exact"},{"name":"up regulation of substance P receptor binding","type":"exact"},{"name":"up regulation of substance P receptor ligand","type":"narrow"},{"name":"up-regulation of neurokinin-1 receptor binding","type":"exact"},{"name":"up-regulation of substance P receptor binding","type":"exact"},{"name":"up-regulation of substance P receptor ligand","type":"narrow"},{"name":"upregulation of neurokinin-1 receptor binding","type":"exact"},{"name":"upregulation of substance P receptor binding","type":"exact"},{"name":"upregulation of substance P receptor ligand","type":"narrow"}],"termid":"GO:1900267"}


id: MONDO:0011305
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any familial cerebral cavernous malformation in which the cause of the disease is a mutation in the PDCD10 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"famililal cerebral cavernous malformations","termid":"MONDO:0031037"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"cerebral cavernous malformation 3","secondary_identifiers":["DOID:0060671","MEDGEN:355121","MESH:C566393","UMLS:C1864040","OMIM:603285","GARD:18314"],"synonyms":[{"name":"CCM3","type":"exact"},{"name":"PDCD10 familial cerebral cavernous malformation","type":"exact"},{"name":"cerebral cavernous malformation 3","type":"exact"},{"name":"cerebral cavernous malformation type 3","type":"exact"},{"name":"cerebral cavernous malformations 3","type":"exact"},{"name":"cerebral cavernous malformations type 3","type":"exact"},{"name":"cerebral cavernous malformations-3","type":"exact"},{"name":"familial cerebral cavernous malformation caused by mutation in PDCD10","type":"exact"}],"termid":"MONDO:0011305","xrefs":{"Monarch":{"xref_id":"0011305"}}}


id: GO:0060223
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the developmental fate of a cell becomes restricted such that it will develop into a retinal rod cell. A retinal rod cell is one of the two photoreceptor subtypes in a camera-type eye.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"camera-type eye photoreceptor cell fate commitment","termid":"GO:0060220"},{"relation_name":"part_of","term_name":"retinal rod cell differentiation","termid":"GO:0060221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"retinal rod cell fate commitment","termid":"GO:0060223"}


id: GO:0008991
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the cleavage of a signal peptide from a protein precursor by a serine endopeptidase mechanism.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete serine-type signal peptidase activity (obsolete GO:0008991)","synonyms":[{"name":"serine-type signal peptidase activity","type":"exact"}],"termid":"GO:0008991"}


id: GO:0009640
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The control of plant growth, development, and differentiation by the duration and nature of light, independent of photosynthesis.","definition_xrefs":["GOC:lr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to red or far red light","termid":"GO:0009639"},{"relation_name":"is_a","term_name":"post-embryonic development","termid":"GO:0009791"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"photomorphogenesis","secondary_identifiers":["Wikipedia:Photomorphogenesis"],"synonyms":[{"name":"plant development in response to light","type":"exact"}],"termid":"GO:0009640"}


id: MONDO:0024278
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Inflammation of the rectum and colon.","definition_xrefs":["NCIT:C77952"],"direct_ancestors":[{"relation_name":"is_a","term_name":"colitis","termid":"MONDO:0005292"},{"relation_name":"is_a","term_name":"proctitis","termid":"MONDO:0005538"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0005046"],"is_obsolete":false,"name":"proctocolitis","secondary_identifiers":["MEDGEN:18651","UMLS:C0033247","SCTID:418130002","MESH:D011350"],"synonyms":[{"name":"colorectum inflammation","type":"exact"},{"name":"inflammation of colorectum","type":"exact"},{"name":"proctocolitis","type":"exact"}],"termid":"MONDO:0024278","xrefs":{"Monarch":{"xref_id":"0024278"}}}


id: PBO:0112847
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"asynchronous replication autosomal RNA 8-1","termid":"PBO:0112847"}


id: PBO:0053988
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1305","termid":"PBO:0053988"}


id: PR:O14281
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC8C9.12c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14281"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized mitochondrial carrier C8C9.12c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC8C9.12c","synonyms":[{"name":"Spom972h-SPAC8C9.12c","type":"exact"}],"termid":"PR:O14281"}


id: FYPO:0005147
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a proteasome to the nuclear periphery is abolished.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to nucleus during vegetative growth","termid":"FYPO:0001424"},{"relation_name":"is_a","term_name":"abnormal protein localization to nuclear periphery","termid":"FYPO:0002338"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000138","FYPO:0000002","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"abolished proteasome localization to nuclear periphery","synonyms":[{"name":"abolished proteasome localisation to nuclear periphery","type":"exact"},{"name":"abolished proteasome localization to nuclear periphery during mitotic cell cycle","type":"related"},{"name":"abolished proteasome localization to nuclear periphery during vegetative growth","type":"exact"},{"name":"proteasome localization to nuclear periphery abolished","type":"exact"}],"termid":"FYPO:0005147"}


id: MONDO:0002005
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete acrodysostosis (obsolete MONDO:0002005)","termid":"MONDO:0002005","xrefs":{"Monarch":{"xref_id":"0002005"}}}


id: SO:0001814
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute of a coding genomic variant.","direct_ancestors":[{"relation_name":"is_a","term_name":"variant_quality","termid":"SO:0001761"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coding_variant_quality","synonyms":[{"name":"coding variant quality","type":"exact"}],"termid":"SO:0001814"}


id: GO:0071906
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a CRD (context dependent regulatory) domain, a domain of about 130 residues that is the most divergent region among the LEF/TCF proteins.","definition_xrefs":["PMID:19460168","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"CRD domain binding","synonyms":[{"name":"context dependent regulatory domain binding","type":"exact"}],"termid":"GO:0071906"}


id: MONDO:0700152
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant tumor arising from hepatocytes that occurs in dogs.","definition_xrefs":["NCIT:C129298"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenocarcinoma, non-human animal","termid":"MONDO:0700099"},{"relation_name":"is_a","term_name":"cancer, dog","termid":"MONDO:1012570"},{"relation_name":"is_a","term_name":"liver disorder, non-human animal","termid":"MONDO:1012967"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"canine hepatocellular carcinoma","termid":"MONDO:0700152","xrefs":{"Monarch":{"xref_id":"0700152"}}}


id: GO:0009478
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete cytochrome c554 (obsolete GO:0009478)","synonyms":[{"name":"cytochrome c554","type":"exact"}],"termid":"GO:0009478"}


id: GO:0034926
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: pyrene-4,5-oxide + H2O = trans-4,5-dihydroxy-4,5-dihydropyrene.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete pyrene-4,5-epoxide hydrolase activity (obsolete GO:0034926)","termid":"GO:0034926"}


id: GO:0032753
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of interleukin-4 production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of interleukin-4 production","termid":"GO:0032673"},{"relation_name":"positively_regulates","term_name":"interleukin-4 production","termid":"GO:0032633"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of interleukin-4 production","secondary_identifiers":["GO:0150135","GO:0045404"],"synonyms":[{"name":"activation of interleukin-4 production","type":"narrow"},{"name":"positive regulation of IL-4 production","type":"exact"},{"name":"positive regulation of interleukin-4 biosynthetic process","type":"narrow"},{"name":"positive regulation of interleukin-4 secretion","type":"narrow"},{"name":"stimulation of interleukin-4 production","type":"narrow"},{"name":"up regulation of interleukin-4 production","type":"exact"},{"name":"up-regulation of interleukin-4 production","type":"exact"},{"name":"upregulation of interleukin-4 production","type":"exact"}],"termid":"GO:0032753"}


id: PR:Q9UTQ0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC1093.04c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UTQ0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCA tRNA nucleotidyltransferase 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1093.04c","synonyms":[{"name":"CCA-adding enzyme 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-SPAC1093.04c","type":"exact"},{"name":"tRNA CCA-pyrophosphorylase 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"tRNA adenylyltransferase 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"tRNA nucleotidyltransferase 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UTQ0"}


id: PBO:0059772
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO3 pseudogene 46","termid":"PBO:0059772"}


id: MONDO:0010862
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inherited susceptibility or predisposition to developing type 1 diabetes mellitus that has material basis in mutation of the locus at chromosome 11q13.","definition_xrefs":["MONDO:patterns/inherited_susceptibility","DOID:0110743","PMID:9683605"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"type 1 diabetes mellitus","termid":"MONDO:0005147"},{"relation_name":"is_a","term_name":"diabetes mellitus, insulin-dependent, X-linked, susceptibility to","termid":"MONDO:0010255"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"type 1 diabetes mellitus 4","secondary_identifiers":["MEDGEN:373925","OMIM:600319","UMLS:C1838261","MESH:C563959"],"synonyms":[{"name":"IDDM4","type":"exact"},{"name":"diabetes mellitus, insulin-dependent, 4","type":"related"},{"name":"insulin-dependent diabetes mellitus 4","type":"exact"}],"termid":"MONDO:0010862","xrefs":{"Monarch":{"xref_id":"0010862"}}}


id: MONDO:0033657
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"leukodystrophy","termid":"MONDO:0019046"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"leukodystrophy, hypomyelinating, 20","secondary_identifiers":["OMIM:619071","DOID:0112153","UMLS:C5436730","MEDGEN:1765130"],"synonyms":[{"name":"HLD20","type":"exact"}],"termid":"MONDO:0033657","xrefs":{"Monarch":{"xref_id":"0033657"}}}


id: PBO:0109623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FERM and PDZ domain containing 2B (pseudogene)","termid":"PBO:0109623"}


id: PBO:0069106
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 354, pseudogene","termid":"PBO:0069106"}


id: MONDO:0020627
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete epileptic encephalopathy, infantile or early childhood (obsolete MONDO:0020627)","secondary_identifiers":["OMIMPS:617711"],"termid":"MONDO:0020627","xrefs":{"Monarch":{"xref_id":"0020627"}}}


id: PBO:0071561
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L35a pseudogene 27","termid":"PBO:0071561"}


id: MONDO:0010514
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"non-SCID combined immunodeficiency","termid":"MONDO:0018814"},{"relation_name":"is_a","term_name":"inborn error of immunity","termid":"MONDO:0003778"},{"relation_name":"is_a","term_name":"combined immunodeficiency","termid":"MONDO:0015131"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"combined immunodeficiency due to moesin deficiency","secondary_identifiers":["DOID:0112001","UMLS:C5568123","Orphanet:504530","MEDGEN:1799546","OMIM:300988","GARD:17939"],"synonyms":[{"name":"CID due to Moesin deficiency","type":"exact"},{"name":"IMD50","type":"exact"},{"name":"MSN-related combined immunodeficiency","type":"exact"},{"name":"X-linked Moesin-associated immunodeficiency","type":"exact"},{"name":"immunodeficiency 50","type":"exact"},{"name":"immunodeficiency 50, X-linked recessive","type":"related"},{"name":"immunodeficiency type 50","type":"exact"}],"termid":"MONDO:0010514","xrefs":{"Monarch":{"xref_id":"0010514"}}}


id: PR:Q9UUH3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mug58 gene.","definition_xrefs":["UniProtKB:Q9UUH3","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized kinase mug58 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC630.09c","synonyms":[{"name":"Spom972h-mug58","type":"exact"},{"name":"meiotically up-regulated gene 58 protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UUH3"}


id: PBO:0087600
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the BLOC-1 complex involved in endosomal maturation; interacts with Vps21p-GFP; has potential role in vacuolar function, as suggested by its ability to bind Vac8p; likely member of; Vab2p-GFP-fusion localizes to cytoplasm in punctate pattern","termid":"PBO:0087600"}


id: MONDO:0007798
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Adult hypophosphatasia (A-HPP) is a mildform of hypophosphatasia characterized by osteomalacia, chondrocalcinosis, osteoarthropathy, stress fractures duringmiddle age, and dental anomalies.","definition_xrefs":["Orphanet:247676"],"gene_count":0,"genotype_count":0,"name":"obsolete adult hypophosphatasia (obsolete MONDO:0007798)","secondary_identifiers":["ICD10CM:E83.3","OMIM:146300","SCTID:20756002","DOID:0110913"],"synonyms":[{"name":"adult Rathburn disease","type":"exact"},{"name":"adult phosphoethanolaminuria","type":"exact"},{"name":"hypophosphatasia of adults","type":"exact"},{"name":"hypophosphatasia, ADULT","type":"related"},{"name":"hypophosphatasia, mild","type":"related"},{"name":"mild hypophosphatasia","type":"related"},{"name":"obsolete adult hypophosphatasia","type":"exact"},{"name":"odontohypophosphatasia","type":"related"}],"termid":"MONDO:0007798","xrefs":{"Monarch":{"xref_id":"0007798"}}}


id: GO:0061046
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of the process in which a highly ordered sequence of patterning events generates the branched structures of the lung, consisting of reiterated combinations of bud outgrowth, elongation, and dichotomous subdivision of terminal units.","definition_xrefs":["GOC:yaf","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of morphogenesis of a branching structure","termid":"GO:0060688"},{"relation_name":"is_a","term_name":"regulation of morphogenesis of an epithelium","termid":"GO:1905330"},{"relation_name":"regulates","term_name":"epithelial tube branching involved in lung morphogenesis","termid":"GO:0060441"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of branching involved in lung morphogenesis","termid":"GO:0061046"}


id: GO:0043996
data:
  {"annotated_genes":["SJAG_00676"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[88771],"is_not":false,"summary":null,"term":"GO:0043996"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + histone H4 L-lysine (position 8) = CoA + histone H4 N6-acetyl-L-lysine (position 8).","definition_xrefs":["PMID:19056256","PMID:18552846"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H4 acetyltransferase activity","termid":"GO:0010485"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00676":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0034212"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0016740","GO:0140096","GO:0003674","GO:0003824","GO:0034212","GO:0016746"],"is_obsolete":false,"name":"histone H4K8 acetyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"histone acetylase activity (H4-K8 specific)","type":"exact"},{"name":"histone acetyltransferase activity (H4-K8 specific)","type":"exact"},{"name":"histone lysine N-acetyltransferase activity (H4-K8 specific)","type":"exact"}],"termid":"GO:0043996","terms_by_termid":{"GO:0043996":null}}


id: PBO:0012855
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defective in sister chromatid disjoining","termid":"PBO:0012855"}


id: GO:0090053
data:
  {"annotated_genes":["SJAG_00142"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91524],"is_not":false,"summary":null,"term":"GO:0090053"}]},"cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of pericentric heterochromatin formation.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of heterochromatin formation","termid":"GO:0031453"},{"relation_name":"is_a","term_name":"regulation of pericentric heterochromatin formation","termid":"GO:0090052"},{"relation_name":"positively_regulates","term_name":"pericentric heterochromatin formation","termid":"GO:0031508"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00142":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0006325"},{"rel_name":"regulates","termid":"GO:0006325"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0006325","GO:0044085"],"is_obsolete":false,"name":"positive regulation of pericentric heterochromatin formation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"positive regulation of chromatin silencing at centromere","type":"exact"},{"name":"positive regulation of pericentric heterochromatin assembly","type":"exact"}],"termid":"GO:0090053","terms_by_termid":{"GO:0090053":null}}


id: MONDO:0011433
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anemia, congenital hypoplastic, with multiple congenital anomalies/intellectual disability syndrome","secondary_identifiers":["OMIM:604315","MESH:C565796","MEDGEN:388087","UMLS:C1858537"],"synonyms":[{"name":"anemia, congenital hypoplastic, with multiple congenital anomalies/intellectual disability syndrome","type":"exact"},{"name":"anemia, congenital hypoplastic, with multiple congenital anomalies/mental retardation syndrome","type":"exact"}],"termid":"MONDO:0011433","xrefs":{"Monarch":{"xref_id":"0011433"}}}


id: MONDO:0002670
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A carcinoma that arises from glandular epithelial cells of the hepatopancreatic ampulla","direct_ancestors":[{"relation_name":"is_a","term_name":"extrahepatic bile duct adenocarcinoma","termid":"MONDO:0002665"},{"relation_name":"is_a","term_name":"duodenal adenocarcinoma","termid":"MONDO:0006186"},{"relation_name":"is_a","term_name":"carcinoma of the ampulla of vater","termid":"MONDO:0017590"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0004335","MONDO:0002515"],"is_obsolete":false,"name":"ampulla of vater adenocarcinoma","secondary_identifiers":["DOID:3502","EFO:0008490","NCIT:C6650","UMLS:C1332243","MEDGEN:231054"],"synonyms":[{"name":"adenocarcinoma of ampulla of Vater","type":"exact"},{"name":"adenocarcinoma of ampulla of vater","type":"related"},{"name":"ampulla of Vater adenocarcinoma","type":"exact"},{"name":"ampullary adenocarcinoma","type":"exact"},{"name":"hepatopancreatic ampulla adenocarcinoma","type":"exact"},{"name":"invasive adenocarcinoma of the ampullary region","type":"exact"}],"termid":"MONDO:0002670","xrefs":{"Monarch":{"xref_id":"0002670"}}}


id: MONDO:0859316
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iron overload, susceptibility to","secondary_identifiers":["MEDGEN:1814970","OMIM:620121","UMLS:C5703292"],"termid":"MONDO:0859316","xrefs":{"Monarch":{"xref_id":"0859316"}}}


id: PBO:0050024
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major histocompatibility complex, class II, DP beta 2 (pseudogene)","termid":"PBO:0050024"}


id: PBO:0061535
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear speckle splicing regulatory protein 1","termid":"PBO:0061535"}


id: GO:0140765
data:
  {"annotated_genes":["SJAG_04039"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[90397],"is_not":false,"summary":null,"term":"GO:0140765"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: histone H3 N6-acetyl-L-lysine (position 56) + NAD+ + H2O = histone H3 L-lysine (position 56) + 2''-O-acetyl-ADP-D-ribose + nicotinamide. This reaction transfers an acetyl group attached to a lysine residue in H3K56 to NAD, producing nicotinamide.","definition_xrefs":["PMID:30374165","PMID:23911928"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone deacetylase activity, NAD-dependent","termid":"GO:0017136"},{"relation_name":"is_a","term_name":"histone H3K deacetylase activity","termid":"GO:0141050"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04039":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0033558"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0019213"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0033558","GO:0019213","GO:0003824","GO:0003674","GO:0016746","GO:0016740","GO:0140096"],"is_obsolete":false,"name":"histone H3K56 deacetylase activity, NAD-dependent","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"NAD-dependent histone H3-K56 deacetylase activity","type":"exact"},{"name":"NAD-dependent histone H3K56 deacetylase activity","type":"exact"},{"name":"NAD-dependent histone deacetylase activity (H3-K56 specific)","type":"exact"}],"termid":"GO:0140765","terms_by_termid":{"GO:0140765":null}}


id: PBO:0004468
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin specific chaperone cofactor D, Alp1","termid":"PBO:0004468"}


id: PBO:0004224
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4.6.1.1","termid":"PBO:0004224"}


id: PBO:0057828
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3147","termid":"PBO:0057828"}


id: FYPO:0007283
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the lateral cell cortex is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PMID:26960792","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to cell cortex during vegetative growth","termid":"FYPO:0001402"},{"relation_name":"is_a","term_name":"normal protein localization to cytoplasm","termid":"FYPO:0001788"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001312","FYPO:0000002","FYPO:0000138","FYPO:0001320"],"is_obsolete":false,"name":"normal protein localization to lateral cell cortex during vegetative growth","synonyms":[{"name":"normal protein localisation to lateral cell cortex during vegetative growth","type":"exact"},{"name":"normal protein localization to cell side during vegetative growth","type":"related"},{"name":"normal protein localization to lateral cell cortex during mitotic cell cycle","type":"related"},{"name":"normal protein localization to lateral cortex during vegetative growth","type":"exact"}],"termid":"FYPO:0007283"}


id: MONDO:0004448
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign neoplasm that arises from the ciliated respiratory mucosa that lines the frontal sinus. It results from the invagination and proliferation of epithelial cells in the underlying stroma.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inverted papilloma","termid":"MONDO:0002537"},{"relation_name":"is_a","term_name":"frontal sinus Schneiderian papilloma","termid":"MONDO:0003752"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"frontal sinus inverted papilloma","secondary_identifiers":["DOID:8060","MEDGEN:272638","UMLS:C1333644","NCIT:C6842"],"synonyms":[{"name":"frontal sinus inverted papilloma","type":"exact"},{"name":"inverted papilloma of frontal sinus","type":"exact"},{"name":"inverted papilloma of the frontal sinus","type":"exact"}],"termid":"MONDO:0004448","xrefs":{"Monarch":{"xref_id":"0004448"}}}


id: GO:0060684
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in the transfer of information from an epithelial cell to a mesenchymal cell where it is interpreted.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell signaling","termid":"GO:0007267"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"epithelial-mesenchymal cell signaling","synonyms":[{"name":"epithelial-mesenchymal cell signalling","type":"exact"}],"termid":"GO:0060684"}


id: PBO:0027214
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_level_of_translation_gene_mRNA_during_vegetative_growth","termid":"PBO:0027214"}


id: GO:0061429
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involving oleic acid that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.","definition_xrefs":["PMID:20395639","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon catabolite activation of transcription from RNA polymerase II promoter","termid":"GO:0000436"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006351"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0006355"}],"interesting_parent_ids":["GO:0010467","GO:0006351","GO:0008150","GO:0006355"],"is_obsolete":false,"name":"positive regulation of transcription from RNA polymerase II promoter by oleic acid","termid":"GO:0061429"}


id: GO:0090083
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of inclusion body assembly. Inclusion body assembly is the aggregation, arrangement and bonding together of a set of components to form an inclusion body.","definition_xrefs":["GOC:BHF","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular component biogenesis","termid":"GO:0044087"},{"relation_name":"is_a","term_name":"regulation of cellular component organization","termid":"GO:0051128"},{"relation_name":"regulates","term_name":"inclusion body assembly","termid":"GO:0070841"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"regulation of inclusion body assembly","termid":"GO:0090083"}


id: MONDO:0006886
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A thyroid neoplasm of mixed papillary and follicular arrangement. Its biological behavior and prognosis is the same as that of a papillary adenocarcinoma of the thyroid. (From DeVita Jr et al., Cancer: Principles & Practice of Oncology, 3d ed, p1271)","definition_xrefs":["MESH:D018265"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thyroid gland follicular carcinoma","termid":"MONDO:0005034"},{"relation_name":"is_a","term_name":"thyroid gland papillary carcinoma","termid":"MONDO:0005075"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"thyroid gland papillary and follicular carcinoma","secondary_identifiers":["UMLS:C0206683","MEDGEN:64631","NCIT:C7380","DOID:3968","EFO:1001083"],"synonyms":[{"name":"papillary and follicular adenocarcinoma","type":"exact"},{"name":"papillary and follicular carcinoma","type":"exact"},{"name":"papillary follicular thyroid adenocarcinoma","type":"related"},{"name":"thyroid gland papillary and follicular carcinoma","type":"exact"}],"termid":"MONDO:0006886","xrefs":{"Monarch":{"xref_id":"0006886"}}}


id: PBO:0030489
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_succinate_import","termid":"PBO:0030489"}


id: GO:0015029
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete internalization receptor activity (obsolete GO:0015029)","synonyms":[{"name":"internalization receptor activity","type":"exact"}],"termid":"GO:0015029"}


id: MOD:01967
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-arginine residue to  omega-N-(N-acetylamino)glucosyl-L-arginine.","definition_xrefs":["PubMed:23955153","RESID:AA0609"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-acetylaminoglucosylated residue","termid":"MOD:00448"},{"relation_name":"is_a","term_name":"omega-N-glycosyl-L-arginine","termid":"MOD:01980"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"omega-N-(N-acetylamino)glucosyl-L-arginine","synonyms":[{"name":"(2S)-2-amino-5-[(amino[(2-N-acetylamino-2-deoxy-D-glucopyranosyl)amino]methylidene)amino]pentanoic acid","type":"exact"},{"name":"CARBOHYD N-linked (GlcNAc) arginine","type":"exact"},{"name":"N(omega)-(2-N-acetylaminoglucosyl)arginine","type":"exact"},{"name":"N(omega)-(2-acetamido-2-deoxy-D-glucopyranosyl)-L-arginine","type":"exact"},{"name":"N(omega)-(2-acetylamino-2-deoxy-D-glucopyranosyl)-L-arginine","type":"exact"},{"name":"NG-(2-N-acetylaminoglucosyl)arginine","type":"exact"},{"name":"NG-(2-acetamido-2-deoxy-D-glucopyranosyl)-L-arginine","type":"exact"},{"name":"NG-(2-acetylamino-2-deoxy-D-glucopyranosyl)-L-arginine","type":"exact"},{"name":"omega-N-(2-N-acetylaminoglucosyl)arginine","type":"exact"},{"name":"omega-N-(2-acetamido-2-deoxy-D-glucopyranosyl)-L-arginine","type":"exact"},{"name":"omega-N-(2-acetylamino-2-deoxy-D-glucopyranosyl)-L-arginine","type":"exact"},{"name":"omega-N-(N-acetylamino)glucosyl-L-arginine","type":"exact"}],"termid":"MOD:01967"}


id: FYPO:0001350
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype that affects the organization of the microtubule cytoskeleton in the vegetative growth phase of the life cycle. Microtubule cytoskeleton organization is a cellular process that results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins.","definition_xrefs":["PomBase:mah","GO:0000226"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal microtubule cytoskeleton organization","termid":"FYPO:0000054"},{"relation_name":"is_a","term_name":"abnormal cytoskeleton organization during vegetative growth","termid":"FYPO:0001328"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0000054","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"abnormal microtubule cytoskeleton organization during vegetative growth","synonyms":[{"name":"abnormal microtubule cytoskeleton organisation during vegetative growth","type":"exact"},{"name":"abnormal microtubule cytoskeleton organization during mitotic cell cycle","type":"related"},{"name":"abnormal microtubule organisation during vegetative growth","type":"related"},{"name":"abnormal microtubule organization during vegetative growth","type":"related"},{"name":"disorganized microtubule cytoskeleton during vegetative growth","type":"related"},{"name":"microtubule cytoskeleton defects during vegetative growth","type":"exact"},{"name":"microtubule organization defects during vegetative growth","type":"related"}],"termid":"FYPO:0001350"}


id: PBO:0089927
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 snoRNP-associated protein Rrp9","termid":"PBO:0089927"}


id: PBO:0005520
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"condensin complex non-SMC subunit Cnd3","termid":"PBO:0005520"}


id: GO:0010505
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the frequency or rate of cell cycle arrest in response to nitrogen starvation.","definition_xrefs":["GOC:dph","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of cell cycle arrest in response to nitrogen starvation (obsolete GO:0010505)","termid":"GO:0010505"}


id: FYPO:0007157
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of histone binding by a gene product (usually a protein) in a mutant is abnormal. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein-protein interaction","termid":"FYPO:0000704"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000702"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0001985","FYPO:0000652","FYPO:0000702"],"is_obsolete":false,"name":"abnormal histone binding","termid":"FYPO:0007157"}


id: PBO:0058441
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 5006","termid":"PBO:0058441"}


id: GO:1903945
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of hepatocyte apoptotic process.","definition_xrefs":["GOC:TermGenie","PMID:8649852","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of hepatocyte apoptotic process","termid":"GO:1903943"},{"relation_name":"is_a","term_name":"positive regulation of epithelial cell apoptotic process","termid":"GO:1904037"},{"relation_name":"positively_regulates","term_name":"hepatocyte apoptotic process","termid":"GO:0097284"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of hepatocyte apoptotic process","synonyms":[{"name":"activation of hepatocyte apoptosis","type":"narrow"},{"name":"activation of hepatocyte apoptotic process","type":"narrow"},{"name":"positive regulation of hepatocyte apoptosis","type":"narrow"},{"name":"up regulation of hepatocyte apoptosis","type":"narrow"},{"name":"up regulation of hepatocyte apoptotic process","type":"exact"},{"name":"up-regulation of hepatocyte apoptosis","type":"narrow"},{"name":"up-regulation of hepatocyte apoptotic process","type":"exact"},{"name":"upregulation of hepatocyte apoptosis","type":"narrow"},{"name":"upregulation of hepatocyte apoptotic process","type":"exact"}],"termid":"GO:1903945"}


id: FYPO:0001562
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-histidine measured in a cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cellular amino acid level","termid":"FYPO:0003985"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"decreased cellular histidine level","secondary_identifiers":["FYPO:0001620"],"synonyms":[{"name":"decreased cellular L-histidine level","type":"exact"},{"name":"decreased cellular histidine level during mitotic cell cycle","type":"related"},{"name":"decreased cellular histidine level during vegetative growth","type":"exact"},{"name":"decreased histidine accumulation","type":"related"},{"name":"reduced cellular histidine level","type":"exact"}],"termid":"FYPO:0001562"}


id: GO:0021602
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structure of the cranial nerves are generated and organized. The cranial nerves are composed of twelve pairs of nerves that emanate from the nervous tissue of the hindbrain. These nerves are sensory, motor, or mixed in nature, and provide the motor and general sensory innervation of the head, neck and viscera. They mediate vision, hearing, olfaction and taste and carry the parasympathetic innervation of the autonomic ganglia that control visceral functions.","definition_xrefs":["GOC:dgh","GOC:jid","GOC:cls","GOC:dph","GO_REF:0000021","ISBN:0838580343"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"},{"relation_name":"part_of","term_name":"cranial nerve development","termid":"GO:0021545"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cranial nerve morphogenesis","termid":"GO:0021602"}


id: GO:0016167
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with glial cell line-derived neurotrophic factor and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.","definition_xrefs":["GOC:signaling","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor activity","termid":"GO:0004896"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"glial cell-derived neurotrophic factor receptor activity","synonyms":[{"name":"GDNF receptor activity","type":"exact"},{"name":"glial cell line-derived neurotrophic factor receptor activity","type":"exact"}],"termid":"GO:0016167"}


id: PBO:0069837
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1123, pseudogene","termid":"PBO:0069837"}


id: PBO:0083046
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Deoxyhypusine synthase; catalyzes formation of deoxyhypusine, the first step in hypusine biosynthesis; triggers posttranslational hypusination of translation elongation factor eIF-5A and regulates its intracellular levels; tetrameric; human homolog DHPS allows growth of yeast haploid dys1 null mutant after sporulation of heterozygous diploid","termid":"PBO:0083046"}


id: PBO:0000589
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcineurin responsive transcription factor Prz1","termid":"PBO:0000589"}


id: MONDO:0004260
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Penetration of a peptic ulcer through the wall of duodenum or stomach allowing the leakage of luminal contents into the peritoneal cavity.","definition_xrefs":["MESH:D010439"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptic ulcer disease","termid":"MONDO:0004247"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"peptic ulcer perforation","secondary_identifiers":["DOID:752","EFO:1001389","MEDGEN:45385","SCTID:79118000","UMLS:C0030925"],"synonyms":[{"name":"acute peptic ulcer with perforation","type":"exact"},{"name":"peptic ulcer with perforation","type":"exact"},{"name":"perforated peptic ulcer","type":"exact"}],"termid":"MONDO:0004260","xrefs":{"Monarch":{"xref_id":"0004260"}}}


id: MONDO:0007234
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"branchial myoclonus with spastic paraparesis and cerebellar ataxia","secondary_identifiers":["UMLS:C1862071","OMIM:113610","MEDGEN:349424","MESH:C566188"],"synonyms":[{"name":"branchial myoclonus with spastic paraparesis and cerebellar ataxia","type":"exact"}],"termid":"MONDO:0007234","xrefs":{"Monarch":{"xref_id":"0007234"}}}


id: PBO:0050986
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intraflagellar transport 70A","termid":"PBO:0050986"}


id: PBO:0083302
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps 5' end of essential NBP1/YLR457C gene required for mitosis","termid":"PBO:0083302"}


id: PR:O13614
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rps1002 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13614"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S10-B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP22H7.08","synonyms":[{"name":"Spom972h-rps1002","type":"exact"}],"termid":"PR:O13614"}


id: PBO:0088053
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ubiquitin-like protein modifier; promotes alternative splicing of SRC1 pre-mRNA; binds non-covalently to the HIND domain of Snu66, may function in modification of Sph1p and Hbt1p, functionally complemented by the human or S. pombe ortholog; mechanism of Hub1p adduct formation not yet clear","termid":"PBO:0088053"}


id: PBO:0087672
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the Isw1b complex; exhibits nucleosome-stimulated ATPase activity and acts within coding regions to coordinate transcription elongation with termination and processing; contains a PHD finger motif; other complex members are Isw1p and Ioc4p","termid":"PBO:0087672"}


id: PBO:0070778
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L12 pseudogene 8","termid":"PBO:0070778"}


id: GO:0043778
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: cobalt-precorrin 8 = cobyrinate.","definition_xrefs":["MetaCyc:RXN-8768"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular acyltransferase activity","termid":"GO:0016867"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0016853","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"cobalt-precorrin-8 methylmutase activity","secondary_identifiers":["RHEA:16209","EC:5.4.99.60"],"synonyms":[{"name":"cobalt-precorrin 8 methylmutase activity","type":"exact"},{"name":"cobalt-precorrin 8X methylmutase activity","type":"exact"},{"name":"cobalt-precorrin-8X methylmutase activity","type":"exact"}],"termid":"GO:0043778"}


id: GO:0002115
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A calcium ion entry mechanism in the plasma membrane activated by the depletion of calcium ion from the internal calcium ion store in the endoplasmic reticulum.","definition_xrefs":["PMID:11120592","PMID:17956991","GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"calcium ion transport","termid":"GO:0006816"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"store-operated calcium entry","synonyms":[{"name":"SOCE","type":"exact"},{"name":"calcium ion import","type":"broad"},{"name":"capacitative calcium entry","type":"exact"},{"name":"store-operated calcium import","type":"exact"}],"termid":"GO:0002115"}


id: GO:0042973
data:
  {"annotated_genes":["SJAG_02192","SJAG_00667","SJAG_01017"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[74488,78171,80425],"is_not":false,"summary":null,"term":"GO:0042973"}]},"cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of (1->3)-beta-D-glucosidic linkages in (1->3)-beta-D-glucans.","definition_xrefs":["EC:3.2.1.39"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta-glucosidase activity","termid":"GO:0008422"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00667":null,"SJAG_01017":null,"SJAG_02192":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016798","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"glucan endo-1,3-beta-D-glucosidase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:3.2.1.39-RXN"],"synonyms":[{"name":"(1->3)-beta-glucan 3-glucanohydrolase activity","type":"related"},{"name":"(1->3)-beta-glucan endohydrolase activity","type":"related"},{"name":"1,3-beta-D-glucan 3-glucanohydrolase activity","type":"related"},{"name":"1,3-beta-D-glucan glucanohydrolase activity","type":"related"},{"name":"beta-1,3-glucanase","type":"broad"},{"name":"callase activity","type":"related"},{"name":"endo-(1,3)-beta-D-glucanase activity","type":"broad"},{"name":"endo-(1->3)-beta-D-glucanase activity","type":"broad"},{"name":"endo-1,3-beta-D-glucanase","type":"broad"},{"name":"endo-1,3-beta-glucanase activity","type":"broad"},{"name":"endo-1,3-beta-glucosidase activity","type":"broad"},{"name":"kitalase activity","type":"related"},{"name":"laminaranase activity","type":"broad"},{"name":"laminarinase activity","type":"broad"},{"name":"oligo-1,3-glucosidase activity","type":"related"}],"termid":"GO:0042973","terms_by_termid":{"GO:0042973":null}}


id: MONDO:0012444
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"PLA2G6-associated neurodegeneration","termid":"MONDO:0017998"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0002039"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0002039","MONDO:0005066"],"is_obsolete":false,"name":"neurodegeneration with brain iron accumulation 2B","secondary_identifiers":["NANDO:1200538","UMLS:C1857747","GARD:10688","MEDGEN:346658","DOID:0110736","OMIM:610217"],"synonyms":[{"name":"Karak syndrome","type":"related"},{"name":"NBIA2B","type":"exact"},{"name":"NBIA2b","type":"exact"},{"name":"atypical neuroaxonal dystrophy","type":"related"},{"name":"early-onset progressive cerebellar ataxia dystonia spasticity and intellectual decline","type":"related"},{"name":"neuroaxonal dystrophy, atypical","type":"exact"},{"name":"neurodegeneration with brain iron accumulation 2B","type":"exact"},{"name":"neurodegeneration with brain iron accumulation type 2B","type":"exact"},{"name":"neurodegeneration with brain iron accumulation type 2b","type":"exact"},{"name":"neurodegeneration with brain iron accumulation, Pla2G6-related","type":"related"},{"name":"neurodegeneration with brain iron accumulation, Pla2g6-related","type":"exact"}],"termid":"MONDO:0012444","xrefs":{"Monarch":{"xref_id":"0012444"}}}


id: PBO:0053649
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 701","termid":"PBO:0053649"}


id: PATO:0000782
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000782 defensive function value (obsolete PATO:0000782)","termid":"PATO:0000782"}


id: GO:0000190
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. MAPKKK cascade involved in transduction of signal promoting pseudohyphal or invasive growth.","definition_xrefs":["PMID:9561267"],"gene_count":0,"genotype_count":0,"name":"obsolete MAPKKK cascade (pseudohyphal growth) (obsolete GO:0000190)","synonyms":[{"name":"MAPKKK cascade (pseudohyphal growth)","type":"exact"}],"termid":"GO:0000190"}


id: PBO:0062712
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 51 subfamily I member 2","termid":"PBO:0062712"}


id: MONDO:0020080
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete histiocytic and dendritic cell tumor (obsolete MONDO:0020080)","termid":"MONDO:0020080","xrefs":{"Monarch":{"xref_id":"0020080"}}}


id: MONDO:0016745
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Diffuse leptomeningeal melanocytosis is a rare tumor of meninges arising from leptomeningeal melanocytes, characterized by diffuse infiltration of the leptomeninges (pia mater and arachnoidea) anywhere in the central nervous system. Clinical features may include stillbirth, intracranial hypertension and hydrocephalus, seizure, ataxia, syringomyelia, cranial nerve palsy, intracranial hemorrhage, sphincter dysfunction and neuropsychiatric symptoms. Transformation into malignant melanoma of the central nervous system was reported. It may be associated with congenital nevi, as a part of neurocutaneous melanosis.","definition_xrefs":["Orphanet:252031"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tumor of meninges","termid":"MONDO:0016743"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diffuse leptomeningeal melanocytosis","secondary_identifiers":["MEDGEN:1651380","GARD:20739","UMLS:C4749348"],"synonyms":[{"name":"DLM","type":"exact"},{"name":"leptomeningeal melanomatosis","type":"broad"}],"termid":"MONDO:0016745","xrefs":{"Monarch":{"xref_id":"0016745"}}}


id: GO:0006611
data:
  {"annotated_genes":["SJAG_04400","SJAG_04472","SJAG_04312","SJAG_03836","SJAG_04366","SJAG_01245","SJAG_01358","SJAG_00753","SJAG_01805","SJAG_04464","SJAG_00375","SJAG_01534"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[64786,64956,71948,93511,101475,109898,117689,117974],"is_not":false,"summary":null,"term":"GO:0006611"},{"annotations":[100763,94147,102170,111323],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0046827"}]},"cv_name":"biological_process","definition":"The directed movement of a protein from the nucleus into the cytoplasm.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein transport","termid":"GO:0006886"},{"relation_name":"is_a","term_name":"nuclear export","termid":"GO:0051168"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00375":null,"SJAG_00753":null,"SJAG_01245":null,"SJAG_01358":null,"SJAG_01534":null,"SJAG_01805":null,"SJAG_03836":null,"SJAG_04312":null,"SJAG_04366":null,"SJAG_04400":null,"SJAG_04464":null,"SJAG_04472":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006913"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006913","GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"protein export from nucleus","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0097349"],"synonyms":[{"name":"copper-induced protein export from nucleus","type":"related"},{"name":"protein export from cell nucleus","type":"exact"},{"name":"protein export out of nucleus","type":"exact"},{"name":"protein transport from nucleus to cytoplasm","type":"exact"},{"name":"protein-nucleus export","type":"exact"}],"termid":"GO:0006611","terms_by_termid":{"GO:0006611":null,"GO:0046827":null}}


id: GO:0008689
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: S-adenosyl-L-methionine + 3-demethylubiquinone-9 = S-adenosyl-L-homocysteine + ubiquinone-9.","definition_xrefs":["GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete 3-demethylubiquinone-9 3-O-methyltransferase activity (obsolete GO:0008689)","termid":"GO:0008689"}


id: PBO:0017888
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coatomer alpha subunit Cop1 (predicted)","termid":"PBO:0017888"}


id: MOD:01643
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively removes or replaces an L-methionine.","definition_xrefs":["OMSSA:9","PubMed:3327521","Unimod:765"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-methionine residue","termid":"MOD:00913"},{"relation_name":"is_a","term_name":"natural, standard, encoded residue removal","termid":"MOD:01651"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-methionine removal","synonyms":[{"name":"Met-loss","type":"related"},{"name":"ntermmcleave","type":"exact"}],"termid":"MOD:01643"}


id: FYPO:0005267
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to aluminium ions. Cells stop growing (and may die) at a concentration of aluminium ions that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0002683","FYPO:0000003","FYPO:0000139","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to aluminium","synonyms":[{"name":"hypersensitive to aluminium","type":"exact"},{"name":"sensitive to aluminium during mitotic cell cycle","type":"related"},{"name":"sensitive to aluminium during vegetative growth","type":"exact"},{"name":"sensitive to aluminium ions","type":"exact"},{"name":"sensitive to aluminum","type":"exact"}],"termid":"FYPO:0005267"}


id: PBO:0058359
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4732","termid":"PBO:0058359"}


id: PBO:0113030
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Catalytic subunit of the DNA polymerase I alpha-primase complex; required for the initiation of DNA replication during mitotic DNA synthesis and premeiotic DNA synthesis; H3-H4 histone chaperone, downstream of Pol32p, involved in the transfer of parental histones to the lagging strand during DNA replication","termid":"PBO:0113030"}


id: GO:0001683
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete axonemal dynein heavy chain (obsolete GO:0001683)","synonyms":[{"name":"axonemal dynein heavy chain","type":"exact"}],"termid":"GO:0001683"}


id: PBO:0003506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"recombination protein Saw1 (predicted)","termid":"PBO:0003506"}


id: GO:0102964
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-corytuberine + S-adenosyl-L-methionine = magnoflorine + S-adenosyl-L-homocysteine.","definition_xrefs":["RHEA:51524"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016741","GO:0016740"],"is_obsolete":false,"name":"S-adenosyl-L-methionine:(S)-corytuberine-N-methyltransferase activity","secondary_identifiers":["MetaCyc:RXN-9315"],"termid":"GO:0102964"}


id: PBO:0111871
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OB fold","termid":"PBO:0111871"}


id: PBO:0081417
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 273","termid":"PBO:0081417"}


id: MONDO:0022965
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A WHO grade I large cystic tumor that occurs almost exclusively in infants, with a prominent desmoplastic stroma having a neuroepithelial population of neoplastic astrocytes together with a variable neuronal component. It involves the superficial cerebral cortex and leptomeninges, and often attaches to the dura. Although clinically it presents as a large tumor, it generally has a good prognosis following surgical resection. (Adapted from WHO)","definition_xrefs":["NCIT:C4738"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mixed neuronal-glial tumor","termid":"MONDO:0016729"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"desmoplastic infantile ganglioglioma","secondary_identifiers":["MEDGEN:231168","DOID:0081259","ONCOTREE:DIG","UMLS:C1321878","GARD:8648"],"synonyms":[{"name":"DIG","type":"exact"},{"name":"Desmoplastic infantile ganglioglioma","type":"exact"}],"termid":"MONDO:0022965","xrefs":{"Monarch":{"xref_id":"0022965"}}}


id: PBO:0050814
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hepatitis B virus integration site 8","termid":"PBO:0050814"}


id: MONDO:0024263
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Aspiration of meconium, blood, amniotic fluid or gastric contents around the time of delivery resulting in clinical symptoms from airway obstruction, parenchymal injury, and ventilation-perfusion mismatch. This may lead to persistent pulmonary hypertension in the newborn.","definition_xrefs":["NCIT:C118312"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"lung disorder","termid":"MONDO:0005275"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neonatal aspiration syndrome","secondary_identifiers":["SCTID:276533002","UMLS:C0349468","MEDGEN:578767"],"termid":"MONDO:0024263","xrefs":{"Monarch":{"xref_id":"0024263"}}}


id: PBO:0116682
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARF like GTPase 13B","termid":"PBO:0116682"}


id: PBO:0038420
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"A1BG antisense RNA 1","termid":"PBO:0038420"}


id: MONDO:0010371
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An X-linked recessive retinal disease characterized by fundus hypopigmentation, decrased visual acuity, nystagmus, astigmatism, progressive axial myopia, defective dark adaptation and protanopia.","definition_xrefs":["Orphanet:178333"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"inherited retinal dystrophy","termid":"MONDO:0019118"},{"relation_name":"is_a","term_name":"X-linked disease","termid":"MONDO:0000425"},{"relation_name":"is_a","term_name":"CACNA1F-related retinopathy","termid":"MONDO:0700243"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"Aland island eye disease","secondary_identifiers":["MESH:C562664","ICD10CM:H35.5","SCTID:266455006","DOID:0050630","MEDGEN:120643","UMLS:C0268505","OMIM:300600","GARD:10574"],"synonyms":[{"name":"AIED","type":"exact"},{"name":"ALAND ISLAND eye disease","type":"related"},{"name":"Aland island eye disease","type":"exact"},{"name":"FORSIUS-Eriksson type ocular albinism","type":"exact"},{"name":"Forsius Eriksson type ocular albinism","type":"related"},{"name":"Forsius-Eriksson syndrome","type":"exact"},{"name":"Forsius-Eriksson type ocular albinism","type":"exact"},{"name":"Åland Islands eye disease","type":"related"}],"termid":"MONDO:0010371","xrefs":{"Monarch":{"xref_id":"0010371"}}}


id: PBO:0052169
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium inwardly rectifying channel subfamily J member 18","termid":"PBO:0052169"}


id: PBO:0055462
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2895","termid":"PBO:0055462"}


id: PBO:0039854
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho GTPase activating protein 20","termid":"PBO:0039854"}


id: PBO:0045488
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Down syndrome critical region 4","termid":"PBO:0045488"}


id: MONDO:0017121
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete syndrome with a Dandy-Walker malformation as major feature (obsolete MONDO:0017121)","secondary_identifiers":["Orphanet:269546"],"termid":"MONDO:0017121","xrefs":{"Monarch":{"xref_id":"0017121"}}}


id: GO:0062131
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: gluconapin + a reduced electron acceptor + O2 = xi-progoitrin + an oxidized electron acceptor + H2O.","definition_xrefs":["PMID:18945935"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dioxygenase activity","termid":"GO:0051213"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"3-butenylglucosinolate 2-hydroxylase activity","secondary_identifiers":["RHEA:60628","MetaCyc:RXNQT-4343"],"synonyms":[{"name":"But-3-enyl Glucosinolate-2-hydroxylase activity","type":"exact"}],"termid":"GO:0062131"}


id: MONDO:0957993
data:
  {"annotated_genes":["SJAG_04665"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86412],"is_not":false,"summary":null,"term":"MONDO:0957993"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"progressive external ophthalmoplegia with mitochondrial DNA deletions","termid":"MONDO:0000090"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04665":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0004069"}],"interesting_parent_ids":["MONDO:0004069","MONDO:0005336","MONDO:0005066","MONDO:0002320"],"is_obsolete":false,"name":"progressive external ophthalmoplegia with mitochondrial dna deletions, autosomal recessive 6","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5882731","MEDGEN:1847098","OMIM:620647"],"termid":"MONDO:0957993","terms_by_termid":{"MONDO:0957993":null},"xrefs":{"Monarch":{"xref_id":"0957993"}}}


id: PBO:0073244
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"selenophosphate synthetase 2 pseudogene 1","termid":"PBO:0073244"}


id: GO:0052772
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of brefeldin A to produce brefeldin A acid. Brefeldin A is also known as gamma,4-dihydroxy-2-(6-hydroxy-1-heptenyl)-4-cyclopentanecrotonic acid lambda-lactone.","definition_xrefs":["PMID:8106385","PMID:10201402","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic ester hydrolase activity","termid":"GO:0052689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0016788","GO:0003824"],"is_obsolete":false,"name":"brefeldin A esterase activity","synonyms":[{"name":"BFA esterase activity","type":"broad"},{"name":"brefeldin A hydrolase activity","type":"exact"}],"termid":"GO:0052772"}


id: GO:0050593
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-N-methylcoclaurine + H+ + NADPH + O2 = (S)-3'-hydroxy-N-methylcoclaurine + H2O + NADP+.","definition_xrefs":["EC:1.14.14.102","RHEA:16649"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"N-methylcoclaurine 3'-monooxygenase activity","secondary_identifiers":["KEGG_REACTION:R05732","MetaCyc:1.14.13.71-RXN"],"synonyms":[{"name":"(S)-N-methylcoclaurine 3'-hydroxylase activity","type":"related"},{"name":"(S)-N-methylcoclaurine,NADPH:oxygen oxidoreductase (3'-hydroxylating)","type":"related"},{"name":"N-methylcoclaurine 3'-hydroxylase activity","type":"exact"},{"name":"cytochrome P450 80B1 activity","type":"related"}],"termid":"GO:0050593"}


id: MONDO:0021143
data:
  {"annotated_genes":["SJAG_03453","SJAG_02855"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85685],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010621"},{"annotations":[87144],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0044792"},{"annotations":[86236],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008097"},{"annotations":[85817],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009578"},{"annotations":[85394],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008093"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"neoplasm","termid":"MONDO:0005070"},{"relation_name":"is_a","term_name":"neurocristopathy","termid":"MONDO:0021635"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02855":null,"SJAG_03453":null},"genotype_count":0,"is_obsolete":false,"name":"melanocytic neoplasm","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:224910","NCIT:C7058","SCTID:399956005","UMLS:C1302746","MESH:D018326"],"synonyms":[{"name":"melanocytic neoplasm","type":"exact"},{"name":"melanomas and nevi","type":"related"}],"termid":"MONDO:0021143","terms_by_termid":{"MONDO:0008093":null,"MONDO:0008097":null,"MONDO:0009578":null,"MONDO:0010621":null,"MONDO:0044792":null},"xrefs":{"Monarch":{"xref_id":"0021143"}}}


id: PBO:0042734
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centromere protein L","termid":"PBO:0042734"}


id: GO:0008824
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: cyanate + H2O = carbamate.","definition_xrefs":["EC:4.2.1.104","RHEA:11120"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-nitrogen lyase activity","termid":"GO:0016840"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"cyanate hydratase activity","secondary_identifiers":["MetaCyc:R524-RXN","UM-BBD_reactionID:r0608"],"synonyms":[{"name":"carbamate hydro-lyase activity","type":"related"},{"name":"cyanase activity","type":"exact"},{"name":"cyanate C-N-lyase activity","type":"related"},{"name":"cyanate aminohydrolase activity","type":"related"},{"name":"cyanate hydrolase activity","type":"related"},{"name":"cyanate lyase activity","type":"exact"}],"termid":"GO:0008824"}


id: PBO:0043584
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collagen type XVI alpha 1 chain","termid":"PBO:0043584"}


id: PBO:0085175
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Omega-class glutathione transferase; induced under oxidative stress; putative peroxisomal localization","termid":"PBO:0085175"}


id: PBO:0073191
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"selenoprotein T pseudogene 2","termid":"PBO:0073191"}


id: MONDO:0003465
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"synovial sarcoma","termid":"MONDO:0010434"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"fibrous synovial sarcoma","secondary_identifiers":["MEDGEN:234267","DOID:5484","NCIT:C6533","UMLS:C1333616"],"synonyms":[{"name":"fibrous sarcoma of synovium","type":"exact"},{"name":"fibrous sarcoma of the synovium","type":"exact"}],"termid":"MONDO:0003465","xrefs":{"Monarch":{"xref_id":"0003465"}}}


id: GO:0009263
data:
  {"annotated_genes":["SJAG_03771","SJAG_02948","SJAG_00885","SJAG_04665","SJAG_02874","SJAG_04487","SJAG_04657","SJAG_04627"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72383],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009265"},{"annotations":[92778,95821,107572],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006240"},{"annotations":[71368],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006233"},{"annotations":[70277,79842],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006231"},{"annotations":[71369,92779,68982],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006235"},{"annotations":[71367],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006227"},{"annotations":[79815,70276],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006226"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a deoxyribonucleotide, a compound consisting of deoxyribonucleoside (a base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide biosynthetic process","termid":"GO:0009165"},{"relation_name":"is_a","term_name":"deoxyribonucleotide metabolic process","termid":"GO:0009262"},{"relation_name":"is_a","term_name":"carbohydrate derivative biosynthetic process","termid":"GO:1901137"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00885":null,"SJAG_02874":null,"SJAG_02948":null,"SJAG_03771":null,"SJAG_04487":null,"SJAG_04627":null,"SJAG_04657":null,"SJAG_04665":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"deoxyribonucleotide biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null},"synonyms":[{"name":"deoxyribonucleotide anabolism","type":"exact"},{"name":"deoxyribonucleotide biosynthesis","type":"exact"},{"name":"deoxyribonucleotide formation","type":"exact"},{"name":"deoxyribonucleotide synthesis","type":"exact"}],"termid":"GO:0009263","terms_by_termid":{"GO:0006226":null,"GO:0006227":null,"GO:0006231":null,"GO:0006233":null,"GO:0006235":null,"GO:0006240":null,"GO:0009265":null}}


id: GO:0097276
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any biological process involved in the maintenance of an internal steady state of creatinine at the level of the cell.","definition_xrefs":["GOC:yaf","PMID:12695560"],"gene_count":0,"genotype_count":0,"name":"obsolete cellular creatinine homeostasis (obsolete GO:0097276)","termid":"GO:0097276"}


id: FYPO:0008022
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which a cell population does not grow in a medium containing alanine as the nitrogen source.","definition_xrefs":["PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished vegetative cell population growth","termid":"FYPO:0001575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000003","FYPO:0002058","FYPO:0000139","FYPO:0002057","FYPO:0001985","FYPO:0002060"],"is_obsolete":false,"name":"abolished cell population growth on alanine nitrogen source","synonyms":[{"name":"abolished alanine utilization","type":"related"},{"name":"abolished growth on alanine nitrogen source","type":"broad"},{"name":"abolished vegetative cell population growth on alanine nitrogen source","type":"exact"},{"name":"cell population growth on alanine nitrogen source abolished","type":"exact"}],"termid":"FYPO:0008022"}


id: FYPO:0006197
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell is inviable, has one nucleus, and has normal length but a greater diameter than normal.","definition_xrefs":["PMID:20805322","PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"mononucleate vegetative cell","termid":"FYPO:0000060"},{"relation_name":"has_part","term_name":"normal vegetative cell length","termid":"FYPO:0003503"},{"relation_name":"is_a","term_name":"mononucleate vegetative cell","termid":"FYPO:0000060"},{"relation_name":"is_a","term_name":"inviable vegetative cell with normal cell morphology","termid":"FYPO:0002199"},{"relation_name":"is_a","term_name":"inviable vegetative cell with abnormal cell morphology","termid":"FYPO:0002273"},{"relation_name":"is_a","term_name":"normal vegetative cell length","termid":"FYPO:0003503"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0001312","FYPO:0000005","FYPO:0000257","FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"inviable mononucleate vegetative cell, with normal cell length and increased cell diameter","synonyms":[{"name":"inviable mononucleate cell, with normal cell length and increased cell diameter, during vegetative growth","type":"exact"},{"name":"inviable mononucleate vegetative cell, with increased cell diameter and normal cell length","type":"exact"},{"name":"inviable mononucleate vegetative cell, with normal cell length and increased cell diameter during mitotic cell cycle","type":"related"},{"name":"inviable mononucleate vegetative cell, with normal length and increased diameter","type":"exact"},{"name":"inviable swollen mononucleate vegetative cell, with normal cell length","type":"related"},{"name":"lethal; mononucleate vegetative cell, with normal cell length and increased cell diameter","type":"exact"}],"termid":"FYPO:0006197"}


id: GO:0070365
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires the specialized features of a hepatocyte. A hepatocyte is specialized epithelial cell that is organized into interconnected plates called lobules, and is the main structural component of the liver.","definition_xrefs":["CL:0000182","PMID:7588884"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell differentiation","termid":"GO:0030855"},{"relation_name":"part_of","term_name":"liver development","termid":"GO:0001889"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hepatocyte differentiation","synonyms":[{"name":"liver cell differentiation","type":"exact"}],"termid":"GO:0070365"}


id: GO:0010016
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the shoot are generated and organized. The shoot is the part of a seed plant body that is usually above ground.","definition_xrefs":["ISBN:0877797099","GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"},{"relation_name":"part_of","term_name":"shoot system development","termid":"GO:0048367"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"shoot system morphogenesis","synonyms":[{"name":"shoot morphogenesis","type":"exact"}],"termid":"GO:0010016"}


id: PBO:0043756
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COX7C pseudogene 4","termid":"PBO:0043756"}


id: GO:1904944
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cardiac ventricle formation.","definition_xrefs":["PMID:23575307","GOC:bc","GOC:BHF","GOC:TermGenie","GOC:BHF_miRNA","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cardiac chamber formation","termid":"GO:1901212"},{"relation_name":"is_a","term_name":"regulation of cardiac ventricle formation","termid":"GO:1904942"},{"relation_name":"positively_regulates","term_name":"cardiac ventricle formation","termid":"GO:0003211"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cardiac ventricle formation","synonyms":[{"name":"activation of cardiac ventricle formation","type":"narrow"},{"name":"up regulation of cardiac ventricle formation","type":"exact"},{"name":"up-regulation of cardiac ventricle formation","type":"exact"},{"name":"upregulation of cardiac ventricle formation","type":"exact"}],"termid":"GO:1904944"}


id: MONDO:0017266
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited ichthyosis","termid":"MONDO:0015947"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"keratinopathic ichthyosis","secondary_identifiers":["Orphanet:281103","icd11.foundation:992865924","GARD:21107","MEDGEN:1393111","SCTID:724837004","UMLS:C4511307","NANDO:1200610","NANDO:2200987"],"synonyms":[{"name":"KPI","type":"exact"}],"termid":"MONDO:0017266","xrefs":{"Monarch":{"xref_id":"0017266"}}}


id: PR:P40370
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- eno101 gene.","definition_xrefs":["UniProtKB:P40370","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"enolase 1-1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1815.01","synonyms":[{"name":"2-phospho-D-glycerate hydro-lyase 1-1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"2-phosphoglycerate dehydratase 1-1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-eno101","type":"exact"}],"termid":"PR:P40370"}


id: PBO:0017785
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cofactor for cytoplasmic methionyl-and glutamyl-tRNA synthetases Asc1 (predicted)","termid":"PBO:0017785"}


id: PBO:0047645
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FKBP prolyl isomerase 2","termid":"PBO:0047645"}


id: MONDO:0020599
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Deficiency of a coagulation factor that is not caused by genetic alterations. Causes include vitamin K deficiency, amyloidosis, and severe liver disease.","definition_xrefs":["NCIT:C34347"],"direct_ancestors":[{"relation_name":"is_a","term_name":"coagulation protein disease","termid":"MONDO:0002242"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"acquired coagulation factor deficiency","secondary_identifiers":["NANDO:1200896","MEDGEN:98","SCTID:25904003","UMLS:C0001169"],"synonyms":[{"name":"acquired coagulation factor deficiency","type":"exact"},{"name":"acquired coagulation protein disease","type":"exact"}],"termid":"MONDO:0020599","xrefs":{"Monarch":{"xref_id":"0020599"}}}


id: GO:0045837
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of membrane potential","termid":"GO:0042391"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of membrane potential","synonyms":[{"name":"down regulation of membrane potential","type":"exact"},{"name":"down-regulation of membrane potential","type":"exact"},{"name":"downregulation of membrane potential","type":"exact"},{"name":"inhibition of membrane potential","type":"narrow"},{"name":"reduction of membrane potential","type":"exact"}],"termid":"GO:0045837"}


id: GO:0035533
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of production of chemokine (C-C motif) ligand 6 (CCL6).","definition_xrefs":["GOC:bf","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of chemokine production","termid":"GO:0032722"},{"relation_name":"is_a","term_name":"regulation of chemokine (C-C motif) ligand 6 production","termid":"GO:0035531"},{"relation_name":"positively_regulates","term_name":"chemokine (C-C motif) ligand 6 production","termid":"GO:0035530"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of chemokine (C-C motif) ligand 6 production","secondary_identifiers":["GO:0035537"],"synonyms":[{"name":"positive regulation of CCL6 production","type":"exact"},{"name":"positive regulation of chemokine (C-C motif) ligand 6 secretion","type":"narrow"}],"termid":"GO:0035533"}


id: GO:0008719
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 7,8-dihydroneopterin 3'-triphosphate = 7,8-dihydromonapterin 3'-triphosphate.","definition_xrefs":["RHEA:28346"],"direct_ancestors":[{"relation_name":"is_a","term_name":"racemase and epimerase activity","termid":"GO:0016854"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016853"],"is_obsolete":false,"name":"dihydroneopterin triphosphate 2'-epimerase activity","secondary_identifiers":["EC:5.1.99.7","MetaCyc:H2NTPEPIM-RXN"],"synonyms":[{"name":"D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase activity","type":"exact"}],"termid":"GO:0008719"}


id: PBO:0079206
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tumor suppressing subtransferable candidate 2 (pseudogene)","termid":"PBO:0079206"}


id: PBO:0028986
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-overlapping_meiosis_I_spindles","termid":"PBO:0028986"}


id: MONDO:0013458
data:
  {"annotated_genes":["SJAG_02977"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87262],"is_not":false,"summary":null,"term":"MONDO:0013458"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"pulmonary hypertension","termid":"MONDO:0005149"},{"relation_name":"is_a","term_name":"inherited renal tubular disease","termid":"MONDO:0015962"},{"relation_name":"is_a","term_name":"mitochondrial oxidative phosphorylation disorder","termid":"MONDO:0016387"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02977":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005240"},{"rel_name":"is_a","termid":"MONDO:0004069"}],"interesting_parent_ids":["MONDO:0004069","MONDO:0005240","MONDO:0005066"],"is_obsolete":false,"name":"hyperuricemia-pulmonary hypertension-renal failure-alkalosis syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C3151209","GARD:17569","Orphanet:363694","OMIM:613845","MEDGEN:462559"],"synonyms":[{"name":"HUPRA syndrome","type":"exact"},{"name":"HUPRAS","type":"related"},{"name":"Hupra syndrome","type":"related"},{"name":"hyperuricemia, pulmonary hypertension, renal failure, and alkalosis","type":"exact"},{"name":"hyperuricemia, pulmonary hypertension, renal failure, and alkalosis syndrome","type":"related"}],"termid":"MONDO:0013458","terms_by_termid":{"MONDO:0013458":null},"xrefs":{"Monarch":{"xref_id":"0013458"}}}


id: PBO:0036050
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_histone_H3-K9_dimethylation_at_centromere_during_vegetative_growth","termid":"PBO:0036050"}


id: GO:0061614
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cellular synthesis of microRNA (miRNA) transcripts. MicroRNA genes are synthesized as primary (pri) miRNA transcripts and subsequently processed to produce the ~22nt miRNAs that function in gene regulation.","definition_xrefs":["PMID:18778799","GOC:dph","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA-templated transcription","termid":"GO:0006351"},{"relation_name":"is_a","term_name":"miRNA metabolic process","termid":"GO:0010586"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006351"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0006351","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"miRNA transcription","synonyms":[{"name":"miRNA gene transcription","type":"exact"},{"name":"microRNA gene transcription","type":"exact"},{"name":"pri-miRNA transcription by RNA polymerase II","type":"exact"},{"name":"pri-miRNA transcription from RNA polymerase II promoter","type":"exact"},{"name":"primary miRNA gene transcription","type":"exact"}],"termid":"GO:0061614"}


id: GO:2000285
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of regulation of excitatory postsynaptic membrane potential.","definition_xrefs":["GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of regulation of excitatory postsynaptic membrane potential (obsolete GO:2000285)","synonyms":[{"name":"negative regulation of EPSP","type":"related"},{"name":"negative regulation of regulation of excitatory postsynaptic membrane potential","type":"exact"}],"termid":"GO:2000285"}


id: MONDO:0013358
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Seckel syndrome in which the cause of the disease is a mutation in the CENPJ gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Seckel syndrome","termid":"MONDO:0019342"},{"relation_name":"is_a","term_name":"microcephaly 6 with or without short stature","termid":"MONDO:0700054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0700092"],"is_obsolete":false,"name":"Seckel syndrome 4","secondary_identifiers":["GARD:15687","OMIM:613676","DOID:0070010","MEDGEN:854819","UMLS:C3888212"],"synonyms":[{"name":"CENPJ Seckel syndrome","type":"exact"},{"name":"SCKL4","type":"exact"},{"name":"Seckel syndrome 4","type":"exact"},{"name":"Seckel syndrome caused by mutation in CENPJ","type":"exact"},{"name":"Seckel syndrome type 4","type":"exact"}],"termid":"MONDO:0013358","xrefs":{"Monarch":{"xref_id":"0013358"}}}


id: GO:0021821
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that results in the release of migrating cells from their interaction with radial glial cells as a component of the process of cerebral cortex glial-mediated radial cell migration.","definition_xrefs":["PMID:12626695","GOC:cls","GOC:jid","GO_REF:0000021","GOC:dgh","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell-cell adhesion","termid":"GO:0022408"},{"relation_name":"part_of","term_name":"layer formation in cerebral cortex","termid":"GO:0021819"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"negative regulation of cell-glial cell adhesion involved in cerebral cortex lamination","synonyms":[{"name":"down regulation of cell-glial cell adhesion involved in cerebral cortex lamination","type":"exact"},{"name":"down-regulation of cell-glial cell adhesion involved in cerebral cortex lamination","type":"exact"},{"name":"downregulation of cell-glial cell adhesion involved in cerebral cortex lamination","type":"exact"},{"name":"inhibition of cell-glial cell adhesion involved in cerebral cortex lamination","type":"narrow"}],"termid":"GO:0021821"}


id: GO:0102456
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: cyanidin 3-O-beta-D-glucoside betaine + 1-O-sinapoyl-beta-D-glucose = cyanin betaine + trans-sinapate + H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete cyanidin 3-O-glucoside 5-O-glucosyltransferase (sinapoyl-glucose dependent) activity (obsolete GO:0102456)","termid":"GO:0102456"}


id: GO:0001167
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binding to a specific DNA sequence in order to modulate transcription by RNA polymerase I. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.","definition_xrefs":["GOC:txnOH"],"gene_count":0,"genotype_count":0,"name":"obsolete RNA polymerase I transcription factor activity, sequence-specific DNA binding (obsolete GO:0001167)","synonyms":[{"name":"sequence-specific DNA binding RNA polymerase I transcription factor activity","type":"exact"}],"termid":"GO:0001167"}


id: PBO:0078042
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha joining 32","termid":"PBO:0078042"}


id: PBO:0034496
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_centromere_during_vegetative_growth","termid":"PBO:0034496"}


id: GO:0019756
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of cyanogenic glycosides, any glycoside containing a cyano group that is released as hydrocyanic acid on acid hydrolysis; such compounds occur in the kernels of various fruits.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycoside biosynthetic process","termid":"GO:0016138"},{"relation_name":"is_a","term_name":"cyanogenic glycoside metabolic process","termid":"GO:0042341"},{"relation_name":"is_a","term_name":"secondary metabolite biosynthetic process","termid":"GO:0044550"},{"relation_name":"is_a","term_name":"nitrile biosynthetic process","termid":"GO:0080028"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"cyanogenic glycoside biosynthetic process","synonyms":[{"name":"cyanogenic glycoside anabolism","type":"exact"},{"name":"cyanogenic glycoside biosynthesis","type":"exact"},{"name":"cyanogenic glycoside formation","type":"exact"},{"name":"cyanogenic glycoside synthesis","type":"exact"}],"termid":"GO:0019756"}


id: PBO:0074360
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMC5 divergent transcript","termid":"PBO:0074360"}


id: GO:0120251
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a hydrocarbon, a compound consisting of carbon and hydrogen only.","definition_xrefs":["Wikipedia:Hydrocarbon","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biosynthetic process","termid":"GO:0009058"},{"relation_name":"is_a","term_name":"hydrocarbon metabolic process","termid":"GO:0120252"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hydrocarbon biosynthetic process","synonyms":[{"name":"hydrocarbon anabolism","type":"exact"},{"name":"hydrocarbon biosynthesis","type":"exact"},{"name":"hydrocarbon formation","type":"exact"},{"name":"hydrocarbon synthesis","type":"exact"}],"termid":"GO:0120251"}


id: GO:0070950
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of neutrophil mediated killing of a bacterium, the directed killing of a bacterium by a neutrophil.","definition_xrefs":["GOC:add","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of neutrophil mediated killing of symbiont cell","termid":"GO:0070949"},{"relation_name":"regulates","term_name":"neutrophil-mediated killing of bacterium","termid":"GO:0070944"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of neutrophil mediated killing of bacterium","termid":"GO:0070950"}


id: GO:0006486
data:
  {"annotated_genes":["SJAG_04090","SJAG_03871","SJAG_00183","SJAG_05348","SJAG_04127","SJAG_04053","SJAG_02163","SJAG_00747","SJAG_00394","SJAG_03032","SJAG_00831","SJAG_02903","SJAG_01389","SJAG_00334","SJAG_01276","SJAG_01006","SJAG_02783","SJAG_03764","SJAG_02648","SJAG_01595","SJAG_04316","SJAG_04906","SJAG_04095","SJAG_00924","SJAG_04571","SJAG_01069","SJAG_01021","SJAG_04728","SJAG_03774","SJAG_01950","SJAG_00816","SJAG_01972","SJAG_03188","SJAG_03656","SJAG_02519","SJAG_04952","SJAG_02102","SJAG_05219","SJAG_04770","SJAG_03311","SJAG_04954","SJAG_04401","SJAG_02996","SJAG_03333","SJAG_01491","SJAG_03082","SJAG_01264","SJAG_00437","SJAG_03056","SJAG_03555","SJAG_00598","SJAG_04363","SJAG_03150","SJAG_03790","SJAG_03676","SJAG_04821","SJAG_04231","SJAG_02056","SJAG_03330","SJAG_00554","SJAG_03149"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[58726,63296,63658,67036,68926,72313,74829,75824,96040,100353,108704,114261,118123],"is_not":false,"summary":null,"term":"GO:0006486"},{"annotations":[111397,105327,63586,100317,61695,77573,65806,69411,77076,73446,94239,91467,75334,64577,80365,100109],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0006488"},{"annotations":[77425,78384,111016,75712,77976,79706,74921,75149,79502,70299,111022,76031,80276,74006,78687],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006487"},{"annotations":[105273,98214,99103,100652,79103,79918,99105,79546,74647,99106,76576,118350,87848,99104],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0018279"},{"annotations":[111017,111023,79707,77977,75150,118351,63015],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006493"},{"annotations":[101861,93378,106287],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035269"}]},"cv_name":"biological_process","definition":"A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins.","definition_xrefs":["GOC:curators","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification process","termid":"GO:0036211"},{"relation_name":"is_a","term_name":"macromolecule glycosylation","termid":"GO:0043413"},{"relation_name":"part_of","term_name":"glycoprotein biosynthetic process","termid":"GO:0009101"}],"gene_count":61,"genes_by_uniquename":{"SJAG_00183":null,"SJAG_00334":null,"SJAG_00394":null,"SJAG_00437":null,"SJAG_00554":null,"SJAG_00598":null,"SJAG_00747":null,"SJAG_00816":null,"SJAG_00831":null,"SJAG_00924":null,"SJAG_01006":null,"SJAG_01021":null,"SJAG_01069":null,"SJAG_01264":null,"SJAG_01276":null,"SJAG_01389":null,"SJAG_01491":null,"SJAG_01595":null,"SJAG_01950":null,"SJAG_01972":null,"SJAG_02056":null,"SJAG_02102":null,"SJAG_02163":null,"SJAG_02519":null,"SJAG_02648":null,"SJAG_02783":null,"SJAG_02903":null,"SJAG_02996":null,"SJAG_03032":null,"SJAG_03056":null,"SJAG_03082":null,"SJAG_03149":null,"SJAG_03150":null,"SJAG_03188":null,"SJAG_03311":null,"SJAG_03330":null,"SJAG_03333":null,"SJAG_03555":null,"SJAG_03656":null,"SJAG_03676":null,"SJAG_03764":null,"SJAG_03774":null,"SJAG_03790":null,"SJAG_03871":null,"SJAG_04053":null,"SJAG_04090":null,"SJAG_04095":null,"SJAG_04127":null,"SJAG_04231":null,"SJAG_04316":null,"SJAG_04363":null,"SJAG_04401":null,"SJAG_04571":null,"SJAG_04728":null,"SJAG_04770":null,"SJAG_04821":null,"SJAG_04906":null,"SJAG_04952":null,"SJAG_04954":null,"SJAG_05219":null,"SJAG_05348":null},"genotype_count":0,"in_subsets":["bp_goslim_japonicus"],"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein glycosylation","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0065006"],"synonyms":[{"name":"protein amino acid glycosylation","type":"exact"},{"name":"protein-carbohydrate complex assembly","type":"related"}],"termid":"GO:0006486","terms_by_termid":{"GO:0006486":null,"GO:0006487":null,"GO:0006488":null,"GO:0006493":null,"GO:0018279":null,"GO:0035269":null}}


id: PBO:0077810
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tumor protein p53 binding protein 1","termid":"PBO:0077810"}


id: PBO:0042908
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cofilin 1 pseudogene 5","termid":"PBO:0042908"}


id: PBO:0069033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 278, pseudogene","termid":"PBO:0069033"}


id: PBO:0075436
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPANX family member N1","termid":"PBO:0075436"}


id: PBO:0116771
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TCF25 ribosome quality control complex subunit","termid":"PBO:0116771"}


id: PBO:0082891
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cyclin-dependent kinase (CDK) catalytic subunit; master regulator of mitotic and meiotic cell cycles; alternately associates with G1, S, G2/M phase cyclins, which provide substrate specificity; regulates metabolism, basal transcription, chromosome dynamics, growth and morphogenesis; transcript induction in osmostress involves antisense RNA; human homologs CDK1, CDK2, CDK3 can complement yeast conditional cdc28 mutants; human CDK1, CDK2 can complement yeast cdc28 null mutant","termid":"PBO:0082891"}


id: GO:1903198
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of L-dopa decarboxylase activity.","definition_xrefs":["GO_REF:0000059","GOC:bf","GOC:PARL","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of L-dopa decarboxylase activity (obsolete GO:1903198)","synonyms":[{"name":"regulation of 4-dihydroxyl-L-phenylalanine decarboxylase activity","type":"exact"},{"name":"regulation of DDC activity","type":"exact"},{"name":"regulation of DOPA decarboxylase activity","type":"exact"}],"termid":"GO:1903198"}


id: PBO:0064480
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"POLH antisense RNA 1","termid":"PBO:0064480"}


id: PBO:0056041
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leukotriene C4 synthase","termid":"PBO:0056041"}


id: GO:1900373
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of purine nucleotide biosynthetic processes.","definition_xrefs":["GOC:TermGenie","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of nucleotide biosynthetic process","termid":"GO:0030810"},{"relation_name":"is_a","term_name":"regulation of purine nucleotide biosynthetic process","termid":"GO:1900371"},{"relation_name":"is_a","term_name":"positive regulation of purine nucleotide metabolic process","termid":"GO:1900544"},{"relation_name":"positively_regulates","term_name":"purine nucleotide biosynthetic process","termid":"GO:0006164"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0055086"},{"rel_name":"regulates","termid":"GO:0055086"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0055086"],"is_obsolete":false,"name":"positive regulation of purine nucleotide biosynthetic process","synonyms":[{"name":"activation of purine nucleotide anabolism","type":"exact"},{"name":"activation of purine nucleotide biosynthesis","type":"exact"},{"name":"activation of purine nucleotide biosynthetic process","type":"narrow"},{"name":"activation of purine nucleotide formation","type":"exact"},{"name":"activation of purine nucleotide synthesis","type":"exact"},{"name":"positive regulation of purine nucleotide anabolism","type":"exact"},{"name":"positive regulation of purine nucleotide biosynthesis","type":"exact"},{"name":"positive regulation of purine nucleotide formation","type":"exact"},{"name":"positive regulation of purine nucleotide synthesis","type":"exact"},{"name":"up regulation of purine nucleotide anabolism","type":"exact"},{"name":"up regulation of purine nucleotide biosynthesis","type":"exact"},{"name":"up regulation of purine nucleotide biosynthetic process","type":"exact"},{"name":"up regulation of purine nucleotide formation","type":"exact"},{"name":"up regulation of purine nucleotide synthesis","type":"exact"},{"name":"up-regulation of purine nucleotide anabolism","type":"exact"},{"name":"up-regulation of purine nucleotide biosynthesis","type":"exact"},{"name":"up-regulation of purine nucleotide biosynthetic process","type":"exact"},{"name":"up-regulation of purine nucleotide formation","type":"exact"},{"name":"up-regulation of purine nucleotide synthesis","type":"exact"},{"name":"upregulation of purine nucleotide anabolism","type":"exact"},{"name":"upregulation of purine nucleotide biosynthesis","type":"exact"},{"name":"upregulation of purine nucleotide biosynthetic process","type":"exact"},{"name":"upregulation of purine nucleotide formation","type":"exact"},{"name":"upregulation of purine nucleotide synthesis","type":"exact"}],"termid":"GO:1900373"}


id: PBO:0076366
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trace amine associated receptor 3, pseudogene","termid":"PBO:0076366"}


id: GO:0016512
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the formation of endothelin 1 by cleavage of the Trp21-Val22 bond in the precursor.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete endothelin-converting enzyme 1 activity (obsolete GO:0016512)","synonyms":[{"name":"ECE-1 activity","type":"related"},{"name":"endothelin-converting enzyme 1 activity","type":"exact"}],"termid":"GO:0016512"}


id: GO:0060096
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of serotonin by a cell, in which released serotonin acts as a neurotransmitter.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"serotonin secretion","termid":"GO:0001820"},{"relation_name":"is_a","term_name":"neurotransmitter secretion","termid":"GO:0007269"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"serotonin secretion, neurotransmission","synonyms":[{"name":"serotonin release, neurotransmission","type":"related"}],"termid":"GO:0060096"}


id: GO:0022819
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the active transport of a potassium ion across a membrane by a mechanism involving conformational change, where energy for active transport is derived from membrane potential if the solute is charged.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"potassium ion transmembrane transporter activity","termid":"GO:0015079"},{"relation_name":"is_a","term_name":"membrane potential driven uniporter activity","termid":"GO:0022810"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"potassium ion uniporter activity","termid":"GO:0022819"}


id: PBO:0072851
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secretion associated Ras related GTPase 1A pseudogene 1","termid":"PBO:0072851"}


id: FYPO:0006521
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which mitotic sister chromatid cohesion is abnormal. Mitotic sister chromatid cohesion is the process in which the sister chromatids of a replicated chromosome are joined along the entire length of the chromosome, from their formation in S phase through metaphase during a mitotic cell cycle.","definition_xrefs":["GO:0007064","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromosome organization","termid":"FYPO:0000641"},{"relation_name":"is_a","term_name":"abnormal cellular component organization during vegetative growth","termid":"FYPO:0001353"},{"relation_name":"is_a","term_name":"abnormal mitotic cell cycle process","termid":"FYPO:0002737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0000631","FYPO:0000641","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"abnormal mitotic sister chromatid cohesion","synonyms":[{"name":"abnormal mitotic chromosome cohesion","type":"exact"},{"name":"abnormal mitotic sister chromatid cohesion during vegetative growth","type":"exact"},{"name":"abnormal sister chromatid cohesion during mitotic cell cycle","type":"related"}],"termid":"FYPO:0006521"}


id: PBO:0078538
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 31","termid":"PBO:0078538"}


id: PBO:0051821
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interferon regulatory factor 1","termid":"PBO:0051821"}


id: GO:1990062
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex first characterized in human and comprised of a R2TP module (R2TP complex), a prefoldin-like module (containing both prefoldin-like proteins and canonical prefoldins), WD40 repeat protein Monad/WDR92 and DNA-dependent RNA polymerase subunit RPB5. This complex might have chaperone activity.","definition_xrefs":["PMID:22418846","PMID:21925213","PMID:20453924","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"RPAP3/R2TP/prefoldin-like complex","synonyms":[{"name":"R2TP/prefoldin-like complex","type":"related"}],"termid":"GO:1990062"}


id: FYPO:0006208
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of RNA measured in a cell differs from normal during a cellular response to copper ion starvation. Total RNA or a specific RNA, such as the mRNA transcribed from a gene of interest, may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered RNA level","termid":"FYPO:0000824"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0006551","FYPO:0005447"],"is_obsolete":false,"name":"altered RNA level during cellular response to copper ion starvation","synonyms":[{"name":"abnormal RNA level during cellular response to copper ion starvation","type":"exact"},{"name":"altered RNA level during cellular response to copper starvation","type":"exact"},{"name":"altered RNA level during copper starvation","type":"exact"},{"name":"altered cellular RNA level during cellular response to copper ion starvation","type":"exact"},{"name":"altered transcript level during cellular response to copper ion starvation","type":"exact"}],"termid":"FYPO:0006208"}


id: PBO:0086143
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein required for normal ER membrane biosynthesis in response to ER stress; ortholog of the FIT family of proteins involved in triglyceride droplet biosynthesis; human homolog FIT2/FITM2, a fatty acyl-CoA diphosphatase, complements the yeast null mutant; disputed role in the synthesis of inositol phospholipids from inositol; required for inositol prototrophy","termid":"PBO:0086143"}


id: GO:0033238
data:
  {"annotated_genes":["SJAG_04546"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[111483],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0170066"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform amines.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of metabolic process","termid":"GO:0019222"},{"relation_name":"regulates","term_name":"amine metabolic process","termid":"GO:0009308"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04546":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of amine metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of amine metabolism","type":"exact"},{"name":"regulation of cellular amine metabolic process","type":"exact"}],"termid":"GO:0033238","terms_by_termid":{"GO:0170066":null}}


id: PBO:0051703
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"INPP5B antisense RNA 1","termid":"PBO:0051703"}


id: PBO:0065624
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PTPN2 pseudogene 2","termid":"PBO:0065624"}


id: MONDO:0003256
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A generally benign intrasellar and/or suprasellar mass arising from the neurohypophysis or infundibulum. It is composed of nests of large cells with granular, eosinophilic cytoplasm due to abundant intracytoplasmic lysosomes. It generally has a slow progression and lacks invasive growth. (Adapted from WHO)","definition_xrefs":["NCIT:C7017"],"direct_ancestors":[{"relation_name":"is_a","term_name":"posterior pituitary gland neoplasm","termid":"MONDO:0003257"},{"relation_name":"is_a","term_name":"granular cell tumor","termid":"MONDO:0006235"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neurohypophysis granular cell tumor","secondary_identifiers":["UMLS:C1333873","ICDO:9582/0","MEDGEN:232255","EFO:1000285","SCTID:699331002","DOID:5047"],"synonyms":[{"name":"granular cell tumor of Neurohypophysis","type":"exact"},{"name":"granular cell tumor of neurohypophysis","type":"exact"},{"name":"granular cell tumor of the Neurohypophysis (WHO grade I)","type":"exact"},{"name":"granular cell tumor of the neurohypophysis","type":"exact"},{"name":"granular cell tumor of the posterior pituitary gland","type":"exact"},{"name":"granular cell tumour of Neurohypophysis","type":"exact"},{"name":"granular cell tumour of neurohypophysis","type":"exact"},{"name":"granular cell tumour of the Neurohypophysis (WHO grade I)","type":"exact"},{"name":"granular cell tumour of the neurohypophysis","type":"exact"},{"name":"granular cell tumour of the posterior pituitary gland","type":"exact"},{"name":"neurohypophysis granular cell tumor","type":"exact"}],"termid":"MONDO:0003256","xrefs":{"Monarch":{"xref_id":"0003256"}}}


id: GO:1904273
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed import of L-alanine from the extracellular region across the plasma membrane and into the cytosol.","definition_xrefs":["PMID:21097500","GO_REF:0000075","GOC:kmv","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid import across plasma membrane","termid":"GO:0089718"},{"relation_name":"is_a","term_name":"L-alanine transmembrane transport","termid":"GO:1904557"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0006810","GO:0055085","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"L-alanine import across plasma membrane","termid":"GO:1904273"}


id: PBO:0004632
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit S4 (predicted)","termid":"PBO:0004632"}


id: MONDO:0020758
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete MONDO:0020758 (obsolete MONDO:0020758)","termid":"MONDO:0020758","xrefs":{"Monarch":{"xref_id":"0020758"}}}


id: MONDO:0700059
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Actinobacillus infectious disease that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bacterial infectious disease, non-human animal","termid":"MONDO:0700050"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Actinobacillus infectious disease, non-human animal","termid":"MONDO:0700059","xrefs":{"Monarch":{"xref_id":"0700059"}}}


id: PBO:0042735
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centromere protein M","termid":"PBO:0042735"}


id: PBO:0091880
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lncRNA nam3","termid":"PBO:0091880"}


id: PBO:0082335
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-binding protein of unknown function; crystal structure resembles that of E.coli pantothenate kinase and other small kinases; null mutant is sensitive to expression of the top1-T722A allele","termid":"PBO:0082335"}


id: PBO:0034664
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_mitotic_cohesin_loading","termid":"PBO:0034664"}


id: PBO:0034201
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-main_stem_of","termid":"PBO:0034201"}


id: GO:0170008
data:
  {"annotated_genes":["SJAG_05694","SJAG_01746","SJAG_02638"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[91667,110197,112466],"is_not":false,"summary":null,"term":"GO:0170008"}]},"cv_name":"molecular_function","definition":"Binds to and increases the activity of mRNA phosphatase.","definition_xrefs":["PMID:22323607"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme activator activity","termid":"GO:0008047"},{"relation_name":"positively_regulates","term_name":"mRNA 5'-triphosphate monophosphatase activity","termid":"GO:0140818"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01746":null,"SJAG_02638":null,"SJAG_05694":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"regulates","termid":"GO:0140098"},{"rel_name":"positively_regulates","termid":"GO:0003824"},{"rel_name":"positively_regulates","termid":"GO:0140098"},{"rel_name":"regulates","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"positively_regulates","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0140677","GO:0003674","GO:0003824","GO:0016787","GO:0030234","GO:0098772","GO:0140098"],"is_obsolete":false,"name":"mRNA phosphatase activator activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0170008","terms_by_termid":{"GO:0170008":null}}


id: MONDO:0017681
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete erythrokeratoderma variabilis progressiva (obsolete MONDO:0017681)","termid":"MONDO:0017681","xrefs":{"Monarch":{"xref_id":"0017681"}}}


id: MONDO:0014127
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Oculocutaneous albinism type 5 (OCA5) is a type of oculocutaneous albinism found in one Pakistani family to date, characterized by white skin, golden hair, photophobia, nystagmus, foveal hypoplasia and impaired visual acuity, that affects males and females equally, and that has been mapped to a locus on chromosome 4q24 but whose gene has not yet been discovered.","definition_xrefs":["Orphanet:370091"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oculocutaneous albinism","termid":"MONDO:0018910"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0005093"],"is_obsolete":false,"name":"oculocutaneous albinism type 5","secondary_identifiers":["GARD:17598","DOID:0070099","UMLS:C3888401","OMIM:615312","MEDGEN:854888","SCTID:722057000"],"synonyms":[{"name":"OCA5","type":"exact"},{"name":"albinism, oculocutaneous, type V","type":"related"},{"name":"oculocutaneous albinism type V","type":"related"}],"termid":"MONDO:0014127","xrefs":{"Monarch":{"xref_id":"0014127"}}}


id: MONDO:0019993
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A narrowing of renal arteries that is present since birth.","definition_xrefs":["PMID:25316474"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kidney disorder","termid":"MONDO:0005240"},{"relation_name":"is_a","term_name":"vascular disorder","termid":"MONDO:0005385"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"congenital renal artery stenosis","secondary_identifiers":["Orphanet:97598","icd11.foundation:856359002","MEDGEN:635552","SCTID:271432005","ICD10CM:Q27.1","UMLS:C0495523","GARD:19381"],"synonyms":[{"name":"congenital RAS","type":"exact"},{"name":"congenital renovascular hypoplasia","type":"exact"}],"termid":"MONDO:0019993","xrefs":{"Monarch":{"xref_id":"0019993"}}}


id: PR:Q9USZ5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A trafficking protein particle complex subunit 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02988","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transport protein particle 20 kDa subunit (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC11G11.04","secondary_identifiers":["UniProtKB:Q9USZ5"],"synonyms":[{"name":"Spom972h-TRAPPC2","type":"exact"},{"name":"TRAPP 20 kDa subunit (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9USZ5"}


id: PBO:0018202
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar membrane zinc transmembrane transporter (predicted)","termid":"PBO:0018202"}


id: PBO:0000509
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDP-diacylglycerol--inositol 3-phosphatidyltransferase Pis1 (predicted)","termid":"PBO:0000509"}


id: MONDO:1011433
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hyperkalemic periodic paralysis that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary neurological disease, non-human animal","termid":"MONDO:1012972"},{"relation_name":"is_a","term_name":"inborn errors of metabolism, non-human animal","termid":"MONDO:1012979"},{"relation_name":"is_a","term_name":"neuromuscular disease, non-human animal","termid":"MONDO:1012983"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyperkalemic periodic paralysis, non-human animal","secondary_identifiers":["OMIA:000785"],"synonyms":[{"name":"HYPP","type":"exact"}],"termid":"MONDO:1011433","xrefs":{"Monarch":{"xref_id":"1011433"}}}


id: PBO:0005871
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"21S rRNA","termid":"PBO:0005871"}


id: PBO:0091580
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial intermembrane space protein, mature-T-Cell Proliferation I type ortholog, unknown biological role Cmc4","termid":"PBO:0091580"}


id: PBO:0029064
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-small_vacuoles","termid":"PBO:0029064"}


id: GO:0106318
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: methane + NADPH + H+ + O2 = methanol + NADP+ + H2O.","definition_xrefs":["RHEA:13641"],"gene_count":0,"genotype_count":0,"name":"obsolete methane monooxygenase NADPH activity (obsolete GO:0106318)","termid":"GO:0106318"}


id: GO:0086086
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transmembrane transfer of a potassium ion by a voltage-gated channel through the plasma membrane of an AV node cardiac muscle cell contributing to the repolarization phase of an action potential. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.","definition_xrefs":["GOC:mtg_cardiac_conduct_nov11","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"voltage-gated potassium channel activity involved in cardiac muscle cell action potential repolarization","termid":"GO:0086008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"voltage-gated potassium channel activity involved in AV node cell action potential repolarization","synonyms":[{"name":"voltage-gated potassium channel activity involved in AV node cardiac muscle cell action potential repolarization","type":"exact"},{"name":"voltage-gated potassium channel activity involved in atrioventricular node cardiac muscle cell action potential","type":"exact"}],"termid":"GO:0086086"}


id: PBO:0048786
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein subunit alpha 15","termid":"PBO:0048786"}


id: PBO:0055073
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2490","termid":"PBO:0055073"}


id: PBO:0045818
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 alpha 1 pseudogene 8","termid":"PBO:0045818"}


id: GO:1903248
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of citrulline biosynthetic process.","definition_xrefs":["GOC:rl","GO_REF:0000058","GOC:BHF","GOC:TermGenie","PMID:19278978"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of small molecule metabolic process","termid":"GO:0062012"},{"relation_name":"is_a","term_name":"regulation of amino acid biosynthetic process","termid":"GO:2000282"},{"relation_name":"regulates","term_name":"citrulline biosynthetic process","termid":"GO:0019240"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006520"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006520"],"is_obsolete":false,"name":"regulation of citrulline biosynthetic process","synonyms":[{"name":"regulation of citrulline anabolism","type":"exact"},{"name":"regulation of citrulline biosynthesis","type":"exact"},{"name":"regulation of citrulline formation","type":"exact"},{"name":"regulation of citrulline synthesis","type":"exact"}],"termid":"GO:1903248"}


id: GO:0140778
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A protein-containing complex stabilizing activity that prevents dissociation of microtubules.","definition_xrefs":["PMID:34970964"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex stabilizing activity","termid":"GO:0140777"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674"],"is_obsolete":false,"name":"microtubule stabilizing activity","termid":"GO:0140778"}


id: GO:0140728
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a GC-box, a DNA motif with the consensus sequence GGGCGG that is located upstream of the start point of eukaryotic transcription units. The GC-box may occur in multiple copies or in either orientation relative to the transcription start site.","definition_xrefs":["PMID:14701757"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II cis-regulatory region sequence-specific DNA binding","termid":"GO:0000978"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0000976"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003677"}],"interesting_parent_ids":["GO:0000976","GO:0005488","GO:0003677","GO:0003674"],"is_obsolete":false,"name":"GC-box binding","synonyms":[{"name":"GC box binding","type":"exact"},{"name":"GC rich promoter region binding","type":"broad"},{"name":"GC-rich region binding","type":"broad"},{"name":"GC_rich_promoter_region binding","type":"broad"}],"termid":"GO:0140728"}


id: PBO:0034766
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hrd1p ubiquitin ligase complex Npl4 (predicted)","termid":"PBO:0034766"}


id: GO:0000348
data:
  {"annotated_genes":["SJAG_00249"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[119016],"is_not":false,"summary":null,"term":"GO:0000348"}]},"cv_name":"biological_process","definition":"Recognition of the pre-mRNA branch site sequence by components of the assembling spliceosome.","definition_xrefs":["GOC:krc","ISBN:0879695897"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-RNA complex assembly","termid":"GO:0022618"},{"relation_name":"part_of","term_name":"spliceosomal complex assembly","termid":"GO:0000245"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00249":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0016071"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0016071","GO:0010467","GO:0065003"],"is_obsolete":false,"name":"mRNA branch site recognition","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0000371","GO:0000370"],"synonyms":[{"name":"U12-type nuclear mRNA branch site recognition","type":"narrow"},{"name":"U2-type nuclear mRNA branch site recognition","type":"narrow"},{"name":"nuclear mRNA branch site recognition","type":"exact"},{"name":"spliceosomal A complex biosynthesis","type":"narrow"},{"name":"spliceosomal A complex formation","type":"narrow"},{"name":"spliceosomal B complex biosynthesis","type":"narrow"},{"name":"spliceosomal B complex formation","type":"narrow"}],"termid":"GO:0000348","terms_by_termid":{"GO:0000348":null}}


id: CHEBI:609827
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-canavanine","termid":"CHEBI:609827"}


id: FYPO:0006891
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of inositol hexakisphosphate kinase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000654","FYPO:0000661","FYPO:0000652","FYPO:0001985"],"is_obsolete":false,"name":"abnormal inositol hexakisphosphate kinase activity","termid":"FYPO:0006891"}


id: PBO:0059026
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"matrix metallopeptidase 15","termid":"PBO:0059026"}


id: MONDO:0010272
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete syndromic X-linked intellectual disability type 10 (obsolete MONDO:0010272)","termid":"MONDO:0010272","xrefs":{"Monarch":{"xref_id":"0010272"}}}


id: PBO:0031403
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-swollen_cell","termid":"PBO:0031403"}


id: PBO:0076501
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"taste 2 receptor member 1","termid":"PBO:0076501"}


id: GO:0006466
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete protein disulfide-isomerase reaction (obsolete GO:0006466)","synonyms":[{"name":"protein disulfide-isomerase reaction","type":"exact"},{"name":"protein disulphide-isomerase reaction","type":"exact"}],"termid":"GO:0006466"}


id: PBO:0028528
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_chromatin_silencing_at_rDNA","termid":"PBO:0028528"}


id: PBO:0035844
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_arginase_activity","termid":"PBO:0035844"}


id: GO:0007323
data:
  {"annotated_genes":["SJAG_00730","SJAG_04923","SJAG_05016","SJAG_04398"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71655,89905],"is_not":false,"summary":null,"term":"GO:0007323"},{"annotations":[93524,88179],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071432"}]},"cv_name":"biological_process","definition":"The generation of a mature, active peptide pheromone via processes unique to its processing and modification. An example of this process is found in Saccharomyces cerevisiae.","definition_xrefs":["GOC:elh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein maturation","termid":"GO:0051604"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00730":null,"SJAG_04398":null,"SJAG_04923":null,"SJAG_05016":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0051604"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0051604"],"is_obsolete":false,"name":"peptide pheromone maturation","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0046613","GO:0007326","GO:0007324"],"synonyms":[{"name":"pheromone processing","type":"exact"}],"termid":"GO:0007323","terms_by_termid":{"GO:0007323":null,"GO:0071432":null}}


id: GO:0030412
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-formimidoyltetrahydrofolate + 2 H+ = 5,10-methenyltetrahydrofolate + NH4.","definition_xrefs":["EC:4.3.1.4","RHEA:22736"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ammonia-lyase activity","termid":"GO:0016841"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"formimidoyltetrahydrofolate cyclodeaminase activity","secondary_identifiers":["KEGG_REACTION:R02302","MetaCyc:4.3.1.4-RXN","Reactome:R-HSA-70920"],"synonyms":[{"name":"5-formimidoyltetrahydrofolate ammonia-lyase (cyclizing)","type":"related"},{"name":"5-formimidoyltetrahydrofolate ammonia-lyase (cyclizing; 5,10-methenyltetrahydrofolate-forming)","type":"related"},{"name":"formiminotetrahydrofolate cyclodeaminase activity","type":"related"}],"termid":"GO:0030412"}


id: PBO:0000799
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal peptidase subunit Spc3 (predicted)","termid":"PBO:0000799"}


id: PBO:0003166
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase A2, PAF family homolog","termid":"PBO:0003166"}


id: GO:2000938
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cellotriose catabolic process.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of catabolic process","termid":"GO:0009896"},{"relation_name":"is_a","term_name":"positive regulation of cellotriose metabolic process","termid":"GO:2000935"},{"relation_name":"is_a","term_name":"regulation of cellotriose catabolic process","termid":"GO:2000936"},{"relation_name":"positively_regulates","term_name":"cellotriose catabolic process","termid":"GO:2000894"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"positive regulation of cellotriose catabolic process","synonyms":[{"name":"positive regulation of cellotriose catabolism","type":"exact"}],"termid":"GO:2000938"}


id: PBO:0067937
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 239","termid":"PBO:0067937"}


id: PBO:0002388
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation elongation factor eIF5A (predicted)","termid":"PBO:0002388"}


id: PBO:0005842
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.7.4.9","termid":"PBO:0005842"}


id: PBO:0072888
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SH3 domain binding kinase family member 3","termid":"PBO:0072888"}


id: MONDO:1010276
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hypogonadism that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endocrine system disorder, non-human animal","termid":"MONDO:1011317"},{"relation_name":"is_a","term_name":"reproductive system disorder, non-human animal","termid":"MONDO:1011354"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypogonadism, non-human animal","secondary_identifiers":["OMIA:000522"],"termid":"MONDO:1010276","xrefs":{"Monarch":{"xref_id":"1010276"}}}


id: PBO:0065504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paraspeckle component 1 pseudogene 1","termid":"PBO:0065504"}


id: MONDO:0043468
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A chronic eruption of fibrous papules that develop and fuse to form a thick sclerotic, hypertrophic band at a site of deep folliculitis, usually along the posterior hairline of the scalp. It is most commonly seen in men of African descent.","definition_xrefs":["NCIT:C34346"],"direct_ancestors":[{"relation_name":"is_a","term_name":"keloid","termid":"MONDO:0005348"},{"relation_name":"is_a","term_name":"folliculitis","termid":"MONDO:0006552"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"acne keloid","secondary_identifiers":["SCTID:238746008","UMLS:C0001145","MESH:D000153","MEDGEN:1720"],"synonyms":[{"name":"Acnes, nuchal keloid","type":"related"},{"name":"Capillitii, dermatitis papillaris","type":"related"},{"name":"Capillitius, dermatitis papillaris","type":"related"},{"name":"Keloidalis nuchae, folliculitis","type":"related"},{"name":"Keloidalis nuchae, lichen","type":"related"},{"name":"acne Keloidalis","type":"related"},{"name":"acne keloid","type":"exact"},{"name":"acne keloids","type":"related"},{"name":"acne, keloidal","type":"related"},{"name":"acne, nuchal keloid","type":"related"},{"name":"dermatitis papillaris Capillitii","type":"related"},{"name":"dermatitis papillaris Capillitius","type":"related"},{"name":"folliculitis Keloidalis","type":"related"},{"name":"folliculitis Keloidalis nuchae","type":"related"},{"name":"keloid Acnes, nuchal","type":"related"},{"name":"keloid acne, nuchal","type":"related"},{"name":"keloid, acne","type":"related"},{"name":"keloidal Acnes","type":"related"},{"name":"keloidal acne","type":"related"},{"name":"keloidal folliculitis","type":"exact"},{"name":"keloids, acne","type":"related"},{"name":"lichen Keloidalis nuchae","type":"related"},{"name":"nuchae, folliculitis Keloidalis","type":"related"},{"name":"nuchae, lichen Keloidalis","type":"related"},{"name":"nuchal keloid Acnes","type":"related"},{"name":"nuchal keloid acne","type":"related"},{"name":"papillaris Capillitii, dermatitis","type":"related"},{"name":"papillaris Capillitius, dermatitis","type":"related"}],"termid":"MONDO:0043468","xrefs":{"Monarch":{"xref_id":"0043468"}}}


id: MONDO:0012779
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"celiac disease","termid":"MONDO:0005130"},{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"celiac disease, susceptibility to, 10","secondary_identifiers":["MEDGEN:394326","UMLS:C2677604","OMIM:612008"],"synonyms":[{"name":"CELIAC10","type":"exact"},{"name":"celiac disease, susceptibility to, 10","type":"exact"},{"name":"gluten-sensitive enteropathy, susceptibility to, 10","type":"related"}],"termid":"MONDO:0012779","xrefs":{"Monarch":{"xref_id":"0012779"}}}


id: GO:0030954
data:
  {"annotated_genes":["SJAG_02737"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[117238],"is_not":false,"summary":null,"term":"GO:0030954"}]},"cv_name":"biological_process","definition":"The 'de novo' formation of an astral microtubule, in which tubulin heterodimers form metastable oligomeric aggregates, some of which go on to support formation of a complete microtubule.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"astral microtubule organization","termid":"GO:0030953"},{"relation_name":"is_a","term_name":"microtubule nucleation by microtubule organizing center","termid":"GO:0051418"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02737":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"part_of","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0000226"},{"rel_name":"part_of","termid":"GO:0000226"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0065003","GO:0007010","GO:0008150","GO:0000226","GO:0007049","GO:0044085"],"is_obsolete":false,"name":"astral microtubule nucleation","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0030954","terms_by_termid":{"GO:0030954":null}}


id: RO:0002411
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"p is causally upstream of q if and only if p precedes q and p and q are linked in a causal chain","direct_ancestors":[{"relation_name":"is_a","term_name":"precedes","termid":"BFO:0000063"},{"relation_name":"is_a","term_name":"causally_upstream_of_or_within","termid":"RO:0002418"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"causally_upstream_of","termid":"RO:0002411"}


id: PBO:0044505
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CYTH1 pseudogene 1","termid":"PBO:0044505"}


id: GO:0000401
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a DNA segment containing the open form of a four-way junction, also known as a Holliday junction, a structure where two DNA double strands are held together by reciprocal exchange of two of the four strands, one strand each from the two original helices. The open form of a four-way junction can be diagrammed without any of the strands crossing over.","definition_xrefs":["GOC:krc","ISBN:0815332181","PMID:15563464"],"direct_ancestors":[{"relation_name":"is_a","term_name":"four-way junction DNA binding","termid":"GO:0000400"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003677"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003677","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"open form four-way junction DNA binding","synonyms":[{"name":"open form Holliday junction binding","type":"exact"}],"termid":"GO:0000401"}


id: PBO:0061278
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear pore associated protein 1","termid":"PBO:0061278"}


id: GO:1901672
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of systemic acquired resistance.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of response to biotic stimulus","termid":"GO:0002833"},{"relation_name":"is_a","term_name":"regulation of systemic acquired resistance","termid":"GO:0010112"},{"relation_name":"is_a","term_name":"positive regulation of defense response","termid":"GO:0031349"},{"relation_name":"is_a","term_name":"positive regulation of response to external stimulus","termid":"GO:0032103"},{"relation_name":"positively_regulates","term_name":"systemic acquired resistance","termid":"GO:0009627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of systemic acquired resistance","synonyms":[{"name":"activation of salicylic acid-dependent systemic resistance","type":"exact"},{"name":"activation of systemic acquired resistance","type":"narrow"},{"name":"positive regulation of salicylic acid-dependent systemic resistance","type":"exact"},{"name":"up regulation of salicylic acid-dependent systemic resistance","type":"exact"},{"name":"up regulation of systemic acquired resistance","type":"exact"},{"name":"up-regulation of salicylic acid-dependent systemic resistance","type":"exact"},{"name":"up-regulation of systemic acquired resistance","type":"exact"},{"name":"upregulation of salicylic acid-dependent systemic resistance","type":"exact"},{"name":"upregulation of systemic acquired resistance","type":"exact"}],"termid":"GO:1901672"}


id: GO:1902579
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A localization which involves another organism.","definition_xrefs":["GOC:jl","GO_REF:0000089","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete multi-organism localization (obsolete GO:1902579)","synonyms":[{"name":"multi organism localization","type":"exact"}],"termid":"GO:1902579"}


id: MONDO:1010807
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Polydactyly that occurs in springbok.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polydactyly, non-human animal","termid":"MONDO:1010158"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polydactyly, springbok","secondary_identifiers":["OMIA:000810-59523"],"termid":"MONDO:1010807","xrefs":{"Monarch":{"xref_id":"1010807"}}}


id: MONDO:0957111
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"muscular channelopathy","termid":"MONDO:0019119"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neurological muscular channelopathy due to a genetic sodium channel defect","secondary_identifiers":["Orphanet:98738","MEDGEN:1842444","UMLS:C5681681","GARD:19563"],"termid":"MONDO:0957111","xrefs":{"Monarch":{"xref_id":"0957111"}}}


id: GO:0015591
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of D-ribose from one side of a membrane to the other. As beta-D-ribofuranose, D-ribose forms the glycose group of all ribonucleosides, ribonucleotides and ribonucleic acids, and also of ribose phosphates, various glycosides, some coenzymes and some forms of vitamin B12.","definition_xrefs":["GOC:mtg_transport","ISBN:0198506732","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pentose transmembrane transporter activity","termid":"GO:0015146"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"D-ribose transmembrane transporter activity","termid":"GO:0015591"}


id: MONDO:0006584
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Jaundice that appears during the neonatal period. In the majority of cases, it appears in the first week of life and is classified as physiologic due to accelerated destruction of erythrocytes and liver immaturity. In a minority of cases it is classified as non-physiologic, appearing in the first twenty four hours after birth, and is associated with underlying diseases including hemolytic disorders, polycythemia, and cephalohematoma.","definition_xrefs":["NCIT:P378"],"gene_count":0,"genotype_count":0,"name":"obsolete neonatal jaundice (obsolete MONDO:0006584)","secondary_identifiers":["SCTID:387712008","MESH:D007567","DOID:2383","ICD9:774.6","ICD9:774.5"],"synonyms":[{"name":"neonatal hyperbilirubinemia","type":"exact"},{"name":"neonatal icterus","type":"exact"}],"termid":"MONDO:0006584","xrefs":{"Monarch":{"xref_id":"0006584"}}}


id: PBO:0070382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulator of chondrogenesis RNA","termid":"PBO:0070382"}


id: GO:0047613
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: cis-aconitate + H+ = CO2 + itaconate.","definition_xrefs":["EC:4.1.1.6","RHEA:15253"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"aconitate decarboxylase activity","secondary_identifiers":["KEGG_REACTION:R02243","MetaCyc:ACONITATE-DECARBOXYLASE-RXN"],"synonyms":[{"name":"CAD activity","type":"broad"},{"name":"cis-aconitate carboxy-lyase (itaconate-forming)","type":"related"},{"name":"cis-aconitate carboxy-lyase activity","type":"related"},{"name":"cis-aconitic decarboxylase activity","type":"related"}],"termid":"GO:0047613"}


id: GO:0051906
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which a pigment granule is maintained in a location and prevented from moving elsewhere.","definition_xrefs":["GOC:tb","GOC:dph","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maintenance of vesicle location","termid":"GO:0051655"},{"relation_name":"part_of","term_name":"pigment granule localization","termid":"GO:0051875"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"maintenance of pigment granule location","synonyms":[{"name":"maintenance of pigment granule localization","type":"related"}],"termid":"GO:0051906"}


id: MONDO:0007219
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A brachymesophalangy with mesomelic short limbs, and carpal and tarsal bone abnormalities. In general, the affected individuals are of slightly short stature and normal intelligence. The syndrome has been described in a kindred with seven affected members from three generations. Transmission appears to be autosomal dominant.","definition_xrefs":["Orphanet:93382"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acromesomelic dysplasia","termid":"MONDO:0019696"},{"relation_name":"is_a","term_name":"brachydactyly","termid":"MONDO:0021004"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"Osebold-Remondini syndrome","secondary_identifiers":["OMIM:112910","DOID:0110968","GARD:983","MEDGEN:350598","MESH:C537092","SCTID:715722003","UMLS:C1862130"],"synonyms":[{"name":"BDA6","type":"exact"},{"name":"Brachymesophalangy with mesomelic short limbs and carpal and tarsal osseous abnormalities","type":"related"},{"name":"OSEBOLD-Remondini syndrome","type":"related"},{"name":"Osebold-Remondini syndrome","type":"exact"},{"name":"brachydactyly type A6","type":"exact"},{"name":"brachydactyly, type A6","type":"exact"},{"name":"brachymesophalangy with mesomelic short limbs and carpal and tarsal osseous abnormalities","type":"exact"}],"termid":"MONDO:0007219","xrefs":{"Monarch":{"xref_id":"0007219"}}}


id: PBO:0040716
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BAF chromatin remodeling complex subunit BCL7B","termid":"PBO:0040716"}


id: PBO:0061928
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 1 subfamily J member 2","termid":"PBO:0061928"}


id: PBO:0044510
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytokine like 1","termid":"PBO:0044510"}


id: PBO:0044774
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD-box helicase 55 pseudogene 1","termid":"PBO:0044774"}


id: MONDO:0060455
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"X-linked disease","termid":"MONDO:0000425"},{"relation_name":"is_a","term_name":"familial hemolytic anemia","termid":"MONDO:0003689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0002280"}],"interesting_parent_ids":["MONDO:0002280","MONDO:0005570"],"is_obsolete":false,"name":"X-linked congenital hemolytic anemia","secondary_identifiers":["MEDGEN:1648376","OMIM:301015","DOID:0111846","UMLS:C4746970"],"synonyms":[{"name":"hemolytic anemia, congenital, X-linked","type":"related"},{"name":"hemolytic anemia, congenital, X-linked, X-linked recessive","type":"exact"}],"termid":"MONDO:0060455","xrefs":{"Monarch":{"xref_id":"0060455"}}}


id: PBO:0048940
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GORAB antisense RNA 1","termid":"PBO:0048940"}


id: PBO:0069789
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1075, pseudogene","termid":"PBO:0069789"}


id: PBO:0050522
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homeobox D10","termid":"PBO:0050522"}


id: GO:0046512
data:
  {"annotated_genes":["SJAG_00880","SJAG_02305","SJAG_02429","SJAG_01057","SJAG_04178","SJAG_02706"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[74052,77212,79244,97234,106311,110023],"is_not":false,"summary":null,"term":"GO:0046512"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of sphingosine (sphing-4-enine), trans-D-erytho-2-amino-octadec-4-ene-1,3-diol, a long chain amino diol sphingoid base that occurs in most sphingolipids in animal tissues.","definition_xrefs":["GOC:ma","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sphingosine metabolic process","termid":"GO:0006670"},{"relation_name":"is_a","term_name":"diol biosynthetic process","termid":"GO:0034312"},{"relation_name":"is_a","term_name":"sphingoid biosynthetic process","termid":"GO:0046520"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00880":null,"SJAG_01057":null,"SJAG_02305":null,"SJAG_02429":null,"SJAG_02706":null,"SJAG_04178":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006629"],"is_obsolete":false,"name":"sphingosine biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"sphingosine anabolism","type":"exact"},{"name":"sphingosine biosynthesis","type":"exact"},{"name":"sphingosine formation","type":"exact"},{"name":"sphingosine synthesis","type":"exact"}],"termid":"GO:0046512","terms_by_termid":{"GO:0046512":null}}


id: PBO:0077629
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane O-mannosyltransferase targeting cadherins 1","termid":"PBO:0077629"}


id: GO:0140236
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Translation that occurs at the presynapse.","definition_xrefs":["PMID:27321671"],"direct_ancestors":[{"relation_name":"is_a","term_name":"translation at synapse","termid":"GO:0140241"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"translation at presynapse","termid":"GO:0140236"}


id: MONDO:0008560
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A hemostatic disorder characterized by a poor anticoagulant response to activated protein C (APC). The activated form of Factor V (Factor Va) is more slowly degraded by activated protein C. Factor V Leiden mutation (R506Q) is the most common cause of APC resistance.","definition_xrefs":["MESH:D020016"],"direct_ancestors":[{"relation_name":"is_a","term_name":"coagulation protein disease","termid":"MONDO:0002242"},{"relation_name":"is_a","term_name":"inherited thrombophilia","termid":"MONDO:0100240"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"thrombophilia due to activated protein C resistance","secondary_identifiers":["MEDGEN:396074","UMLS:C1861171","DOID:0111902","ICD9:289.81","OMIM:188055","SCTID:421527008"],"synonyms":[{"name":"APC resistance","type":"related"},{"name":"Activated Protein C resistance","type":"related"},{"name":"Pccf deficiency","type":"related"},{"name":"Proc cofactor deficiency","type":"related"},{"name":"THPH2","type":"related"},{"name":"resistance, APC","type":"related"},{"name":"thrombophilia 2 due to activated protein C resistance","type":"exact"},{"name":"thrombophilia 5","type":"related"},{"name":"thrombophilia due to ACTIVATED PROTEIN C resistance","type":"related"},{"name":"thrombophilia due to Factor 5 Leiden","type":"related"},{"name":"thrombophilia due to activated protein C resistance","type":"exact"},{"name":"thrombophilia due to deficiency of Activated Protein C cofactor","type":"related"},{"name":"thrombophilia, susceptibility to, due to factor V Leiden","type":"related"}],"termid":"MONDO:0008560","xrefs":{"Monarch":{"xref_id":"0008560"}}}


id: PBO:0027747
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_level_of_regulation_of_mitotic_cell_cycle_gene_mRNA_during_nitrogen_starvation","termid":"PBO:0027747"}


id: SO:1001194
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1001194 alternatively_spliced_gene_encoding_greater_than_1_polypeptide_coding_regions_overlapping (obsolete SO:1001194)","termid":"SO:1001194"}


id: PBO:0089729
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycerol-3-phosphate O-acyltransferase Sct1/Gpt1","termid":"PBO:0089729"}


id: GO:0120264
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, extent or location of chromosome attachment to the nuclear envelope.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell cycle process","termid":"GO:0010564"},{"relation_name":"is_a","term_name":"regulation of localization","termid":"GO:0032879"},{"relation_name":"regulates","term_name":"chromosome attachment to the nuclear envelope","termid":"GO:0097240"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"regulation of chromosome attachment to the nuclear envelope","termid":"GO:0120264"}


id: MONDO:0017641
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete miscellaneous movement disorder due to neurodegenerative disease (obsolete MONDO:0017641)","secondary_identifiers":["Orphanet:306695"],"termid":"MONDO:0017641","xrefs":{"Monarch":{"xref_id":"0017641"}}}


id: CHEBI:45979
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thiabendazole","termid":"CHEBI:45979"}


id: PBO:0042684
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCAAT enhancer binding protein gamma","termid":"PBO:0042684"}


id: PR:Q9USK7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A phosphopantothenate--cysteine ligase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR12290:SF2","OMA:SCHPO04565"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C4B3.18 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC4B3.18","secondary_identifiers":["UniProtKB:Q9USK7"],"synonyms":[{"name":"Spom972h-PPCS","type":"exact"}],"termid":"PR:Q9USK7"}


id: GO:0042996
data:
  {"annotated_genes":["SJAG_03970"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88430],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042997"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the transport of proteins from the Golgi to the plasma membrane.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein transport","termid":"GO:0051223"},{"relation_name":"is_a","term_name":"regulation of vesicle-mediated transport","termid":"GO:0060627"},{"relation_name":"is_a","term_name":"regulation of protein localization to plasma membrane","termid":"GO:1903076"},{"relation_name":"regulates","term_name":"Golgi to plasma membrane protein transport","termid":"GO:0043001"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03970":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0016192","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of Golgi to plasma membrane protein transport","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0042996","terms_by_termid":{"GO:0042997":null}}


id: PBO:0055674
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LIPC antisense RNA 1","termid":"PBO:0055674"}


id: MONDO:0971150
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"neuronopathy, distal hereditary motor, autosomal recessive","termid":"MONDO:0015363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0006025","MONDO:0005244"],"is_obsolete":false,"name":"neuronopathy, distal hereditary motor, autosomal recessive 11, with spasticity","secondary_identifiers":["MEDGEN:1856205","OMIM:620854","UMLS:C5935630"],"termid":"MONDO:0971150","xrefs":{"Monarch":{"xref_id":"0971150"}}}


id: GO:0061606
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The propionylation of the N-terminal amino acid of proteins.","definition_xrefs":["GOC:dph","PMID:17267393","PMID:23043182"],"direct_ancestors":[{"relation_name":"is_a","term_name":"post-translational protein modification","termid":"GO:0043687"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"N-terminal protein amino acid propionylation","termid":"GO:0061606"}


id: GO:0034300
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which sporangiospores, a type of asexual spore found in fungi, are formed. Sporangiospores are formed within sac-like structure, the sporangium, following the division of the cytoplasm.","definition_xrefs":["PMID:32839172","GOC:ds","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"asexual sporulation resulting in formation of a cellular spore","termid":"GO:0043936"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sporangiospore formation","termid":"GO:0034300"}


id: GO:0018596
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: dimethylsilanediol + O2 + 2 H+ + 2 e- = H2O + hydroxymethylmethylsilanediol.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete dimethylsilanediol hydroxylase activity (obsolete GO:0018596)","synonyms":[{"name":"DMSD hydroxylase activity","type":"exact"}],"termid":"GO:0018596"}


id: PBO:0087346
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sphingoid long-chain base kinase; responsible for synthesis of long-chain base phosphates, which function as signaling molecules, regulates synthesis of ceramide from exogenous long-chain bases, localizes to the Golgi and late endosomes; LCB4 has a paralog, LCB5, that arose from the whole genome duplication","termid":"PBO:0087346"}


id: GO:0004807
data:
  {"annotated_genes":["SJAG_04192"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[72455],"is_not":false,"summary":null,"term":"GO:0004807"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: D-glyceraldehyde 3-phosphate = dihydroxyacetone phosphate.","definition_xrefs":["RHEA:18585"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular oxidoreductase activity, interconverting aldoses and ketoses","termid":"GO:0016861"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04192":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016853"],"is_obsolete":false,"name":"triose-phosphate isomerase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["KEGG_REACTION:R01015","MetaCyc:TRIOSEPISOMERIZATION-RXN","Reactome:R-HSA-70454","Reactome:R-HSA-70481","EC:5.3.1.1"],"synonyms":[{"name":"D-glyceraldehyde-3-phosphate aldose-ketose-isomerase activity","type":"related"},{"name":"D-glyceraldehyde-3-phosphate ketol-isomerase activity","type":"related"},{"name":"phosphotriose isomerase activity","type":"related"},{"name":"triose phosphate mutase activity","type":"related"},{"name":"triose phosphoisomerase activity","type":"related"},{"name":"triosephosphate isomerase activity","type":"related"},{"name":"triosephosphate mutase activity","type":"related"}],"termid":"GO:0004807","terms_by_termid":{"GO:0004807":null}}


id: PBO:0032720
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination,_multiple_cell_divisions,_spherical_cell_with_cell_lysis","termid":"PBO:0032720"}


id: PBO:0066391
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"receptor accessory protein 1","termid":"PBO:0066391"}


id: MONDO:0005038
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete genetic disorder (obsolete MONDO:0005038)","termid":"MONDO:0005038","xrefs":{"Monarch":{"xref_id":"0005038"}}}


id: GO:0062237
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which a protein is transported to, and/or maintained at the postsynapse, the part of a synapse that is part of the post-synaptic cell.","definition_xrefs":["PMID:31189538"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to synapse","termid":"GO:0035418"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"protein localization to postsynapse","termid":"GO:0062237"}


id: PBO:0013775
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy protein Atg11","termid":"PBO:0013775"}


id: PR:Q7LL22
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- nsk1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q7LL22"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinetochore protein nsk1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3G9.01","synonyms":[{"name":"Spom972h-nsk1","type":"exact"},{"name":"nucleolus spindle kinetochore protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q7LL22"}


id: FYPO:0007233
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the initiation of nuclear DNA replication begins later than normal at origins that normally fire early.","definition_xrefs":["PMID:22279046","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"delayed onset of mitotic DNA replication initiation","termid":"FYPO:0006031"},{"relation_name":"output_of","term_name":"abnormal regulation of mitotic DNA replication initiation from early origin","termid":"FYPO:0007232"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000293"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000293","FYPO:0005447","FYPO:0000631","FYPO:0001985"],"is_obsolete":false,"name":"delayed onset of mitotic DNA replication initiation from early origin","synonyms":[{"name":"delayed mitotic DNA replication initiation from early origin","type":"exact"},{"name":"delayed onset of DNA replication initiation from early origin during mitotic cell cycle","type":"exact"},{"name":"delayed onset of DNA replication initiation from early origin during vegetative growth","type":"exact"},{"name":"delayed onset of mitotic DNA replication initiation at early origin","type":"exact"},{"name":"delayed onset of mitotic DNA replication initiation from early replication origin","type":"exact"}],"termid":"FYPO:0007233"}


id: MONDO:0007971
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Delayed membranous cranial ossification is a rare, genetic primary bone dysplasia characterized by absent ossification of calvarial bones at birth and characteristic facial dysmorphisms (frontal bossing, hypertelorism, downward-slanting palpebral fissures, proptosis, flat nasal bridge, low-set ears, midface retrusion). Patients present a soft skull at birth which, over time, progressively ossifies and in adulthood typically results in a deformed skull (with brachycephaly and prominent occiput). No other skeletal abnormalities are associated and patients have normal cognitive and motor development.","definition_xrefs":["Orphanet:3034"],"direct_ancestors":[{"relation_name":"is_a","term_name":"skeletal dysplasia","termid":"MONDO:0018230"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"delayed membranous cranial ossification","secondary_identifiers":["SCTID:715524004","UMLS:C1835030","GARD:1727","OMIM:155980","icd11.foundation:766852360","MESH:C563592","MEDGEN:320502"],"synonyms":[{"name":"Gonzales-del Angel syndrome","type":"exact"},{"name":"membranous cranial ossification, delayed","type":"related"}],"termid":"MONDO:0007971","xrefs":{"Monarch":{"xref_id":"0007971"}}}


id: MONDO:0003867
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A diffuse or multifocal proliferation of uniform nevoid polygonal cells in the leptomeninges. Cells may spread into the Virchow-Robin spaces without frank invasion of the brain. Diffuse melanocytosis carries a poor prognosis even in the absence of histologic malignancy. (WHO)","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"central nervous system melanocytic neoplasm","termid":"MONDO:0003222"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"diffuse meningeal melanocytosis","secondary_identifiers":["NCIT:C6890","ICDO:8728/0","MEDGEN:226841","UMLS:C1266112","DOID:6379"],"synonyms":[{"name":"diffuse melanocytosis","type":"exact"},{"name":"diffuse melanocytosis (morphologic abnormality)","type":"exact"},{"name":"diffuse melanosis","type":"exact"},{"name":"meningeal melanocytosis","type":"exact"}],"termid":"MONDO:0003867","xrefs":{"Monarch":{"xref_id":"0003867"}}}


id: GO:0044187
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A small lytic vacuole that has cell cycle-independent morphology and is found in most host animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and host cell lysosomes have a great variety of morphologies and functions.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host intracellular membrane-bounded organelle","termid":"GO:0033648"},{"relation_name":"is_a","term_name":"host cell cytoplasm part","termid":"GO:0033655"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell lysosome","termid":"GO:0044187"}


id: MONDO:0004904
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"degeneration of macula and posterior pole","termid":"MONDO:0002175"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"toxic maculopathy","secondary_identifiers":["MEDGEN:543164","SCTID:44115007","DOID:9867","ICD9:362.55","UMLS:C0271086","icd11.foundation:1889317154"],"synonyms":[{"name":"toxic maculopathy of retina","type":"exact"}],"termid":"MONDO:0004904","xrefs":{"Monarch":{"xref_id":"0004904"}}}


id: PR:P24487
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ATP synthase subunit alpha, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02184"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase subunit alpha, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC14C4.14","secondary_identifiers":["UniProtKB:P24487"],"synonyms":[{"name":"Spom972h-ATP5A1","type":"exact"}],"termid":"PR:P24487"}


id: PBO:0018107
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces specific SAP domain containing protein","termid":"PBO:0018107"}


id: GO:0052057
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which an organism effects a change in the structure or function of its host organism, mediated by a substance secreted by a type III secretion system in the organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete modification by symbiont of host morphology or physiology via protein secreted by type III secretion system (obsolete GO:0052057)","termid":"GO:0052057"}


id: PBO:0078314
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Asp (GTC) 10-1","termid":"PBO:0078314"}


id: GO:1990891
data:
  {"annotated_genes":["SJAG_01837"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[116975],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1905824"}]},"cv_name":"biological_process","definition":"The cell cycle process in which sister chromatid arms are physically detached from each other during mitosis.","definition_xrefs":["PMID:21633354"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitotic cell cycle process","termid":"GO:1903047"},{"relation_name":"part_of","term_name":"mitotic sister chromatid separation","termid":"GO:0051306"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01837":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0000070"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0000070","GO:0007049","GO:0008150"],"is_obsolete":false,"name":"mitotic sister chromatid arm separation","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1990891","terms_by_termid":{"GO:1905824":null}}


id: PR:P78854
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- plb1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P78854"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysophospholipase 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1A6.04c","synonyms":[{"name":"Spom972h-plb1","type":"exact"},{"name":"phospholipase B 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P78854"}


id: PR:Q9Y7Y1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC365.07c gene.","definition_xrefs":["UniProtKB:Q9Y7Y1","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein sgm1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC365.07c","synonyms":[{"name":"Spom972h-SPBC365.07c","type":"exact"}],"termid":"PR:Q9Y7Y1"}


id: PBO:0070943
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L17 pseudogene 51","termid":"PBO:0070943"}


id: GO:1903399
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of m7G(5')pppN diphosphatase activity.","definition_xrefs":["GO_REF:0000059","PMID:22323607","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of m7G(5')pppN diphosphatase activity (obsolete GO:1903399)","synonyms":[{"name":"activation of 7-methylguanosine-5'-triphospho-5'-polynucleotide 7-methylguanosine-5'-phosphohydrolase activity","type":"narrow"},{"name":"activation of M(7)G(5')pppN pyrophosphatase activity","type":"narrow"},{"name":"activation of decapase activity","type":"related"},{"name":"activation of m7G(5')pppN diphosphatase activity","type":"narrow"},{"name":"activation of m7G(5')pppN pyrophosphatase activity","type":"narrow"},{"name":"positive regulation of 7-methylguanosine-5'-triphospho-5'-polynucleotide 7-methylguanosine-5'-phosphohydrolase activity","type":"exact"},{"name":"positive regulation of M(7)G(5')pppN pyrophosphatase activity","type":"exact"},{"name":"positive regulation of decapase activity","type":"related"},{"name":"positive regulation of m7G(5')pppN pyrophosphatase activity","type":"exact"},{"name":"up regulation of 7-methylguanosine-5'-triphospho-5'-polynucleotide 7-methylguanosine-5'-phosphohydrolase activity","type":"exact"},{"name":"up regulation of M(7)G(5')pppN pyrophosphatase activity","type":"exact"},{"name":"up regulation of decapase activity","type":"related"},{"name":"up regulation of m7G(5')pppN diphosphatase activity","type":"exact"},{"name":"up regulation of m7G(5')pppN pyrophosphatase activity","type":"exact"},{"name":"up-regulation of 7-methylguanosine-5'-triphospho-5'-polynucleotide 7-methylguanosine-5'-phosphohydrolase activity","type":"exact"},{"name":"up-regulation of M(7)G(5')pppN pyrophosphatase activity","type":"exact"},{"name":"up-regulation of decapase activity","type":"related"},{"name":"up-regulation of m7G(5')pppN diphosphatase activity","type":"exact"},{"name":"up-regulation of m7G(5')pppN pyrophosphatase activity","type":"exact"},{"name":"upregulation of 7-methylguanosine-5'-triphospho-5'-polynucleotide 7-methylguanosine-5'-phosphohydrolase activity","type":"exact"},{"name":"upregulation of M(7)G(5')pppN pyrophosphatase activity","type":"exact"},{"name":"upregulation of decapase activity","type":"related"},{"name":"upregulation of m7G(5')pppN diphosphatase activity","type":"exact"},{"name":"upregulation of m7G(5')pppN pyrophosphatase activity","type":"exact"}],"termid":"GO:1903399"}


id: PR:O13795
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pof8 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13795"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein pof8 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17G6.17","synonyms":[{"name":"Spom972h-pof8","type":"exact"}],"termid":"PR:O13795"}


id: PBO:0085780
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of the endoplasmic reticulum; required for GPI-phospholipase A2 activity that remodels the GPI anchor as a prerequisite for association of GPI-anchored proteins with lipid rafts; functionally complemented by human ortholog PERLD1","termid":"PBO:0085780"}


id: PBO:0040730
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"beta-carotene oxygenase 2","termid":"PBO:0040730"}


id: PBO:0027625
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cell_cycle_arrest_in_mitotic_G1_phase_in_response_to_nitrogen_starvation","termid":"PBO:0027625"}


id: MONDO:0013877
data:
  {"annotated_genes":["SJAG_01924"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86513],"is_not":false,"summary":null,"term":"MONDO:0013877"}]},"cv_name":"mondo","definition":"An autosomal recessive metabolic disorder characterized by delayed psychomotor development and lactic acidosis with a normal lactate/pyruvate ratio resulting from impaired mitochondrial pyruvate oxidation.","definition_xrefs":["PMID:22628558"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn mitochondrial metabolism disorder","termid":"MONDO:0004069"},{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"pyruvate metabolism disorder","termid":"MONDO:0016789"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01924":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0004069","MONDO:0006025","MONDO:0005066"],"is_obsolete":false,"name":"mitochondrial pyruvate carrier deficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["Orphanet:447784","DOID:0080363","GARD:17771","MEDGEN:766521","UMLS:C3553607","OMIM:614741"],"synonyms":[{"name":"MPYCD","type":"related"},{"name":"mitochondrial pyruvate carrier deficiency","type":"exact"}],"termid":"MONDO:0013877","terms_by_termid":{"MONDO:0013877":null},"xrefs":{"Monarch":{"xref_id":"0013877"}}}


id: MONDO:0015480
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Coloboma of superior eyelid is a rare developmental defect during embryogenesis characterized by a typically unilateral, partial or full-thickness, variably sized defect of the superior eyelid, ranging from a small notch to complete absence of the entire lid, which is commonly triangular in shape (with base at eyelid margin) and located on the medial third of the lid. It can occur isolated, associated with other anomalies (e.g. ocular/orbital and facial), or as part of a syndrome.","definition_xrefs":["Orphanet:155884"],"direct_ancestors":[{"relation_name":"is_a","term_name":"facial cleft","termid":"MONDO:0015411"},{"relation_name":"is_a","term_name":"coloboma of eyelid","termid":"MONDO:0020357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"coloboma of superior eyelid","secondary_identifiers":["SCTID:763132003","GARD:19977","MEDGEN:350283","UMLS:C1863872"],"synonyms":[{"name":"superior palpebral coloboma","type":"exact"}],"termid":"MONDO:0015480","xrefs":{"Monarch":{"xref_id":"0015480"}}}


id: MONDO:0008431
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete slipped femoral capital epiphyses (obsolete MONDO:0008431)","termid":"MONDO:0008431","xrefs":{"Monarch":{"xref_id":"0008431"}}}


id: MONDO:0005969
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A viral encephalitis caused by the St. Louis encephalitis virus (encephalitis virus, st. louis), a flavivirus. It is transmitted to humans and other vertebrates primarily by mosquitoes of the genus culex. The primary animal vectors are wild birds and the disorder is endemic to the midwestern and southeastern United States. Infections may be limited to an influenza-like illness or present as an aseptic meningitis or encephalitis. Clinical manifestations of the encephalitic presentation may include seizures, lethargy, myoclonus, focal neurologic signs, coma, and death. (From Adams et al., Principles of Neurology, 6th ed, p750)","definition_xrefs":["MESH:D004674"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Flaviviridae infectious disease","termid":"MONDO:0005763"},{"relation_name":"is_a","term_name":"mosquito-borne viral encephalitis","termid":"MONDO:0020601"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"st. Louis encephalitis","secondary_identifiers":["DOID:10845","GARD:19041","ICD9:062.3","SCTID:417607009","MedDRA:10041896","EFO:0007495","ICD10CM:A83.3","Orphanet:83484","UMLS:C0014060","MEDGEN:41773","icd11.foundation:1306878274"],"synonyms":[{"name":"Neuroinvasive St. Louis encephalitis virus infection","type":"exact"},{"name":"Saint Louis encephalitis","type":"exact"},{"name":"St. Louis encephalitis virus caused infectious encephalitis","type":"exact"},{"name":"St. Louis encephalitis virus infectious encephalitis","type":"exact"}],"termid":"MONDO:0005969","xrefs":{"Monarch":{"xref_id":"0005969"}}}


id: PBO:0000655
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO E3 ligase Pli1","termid":"PBO:0000655"}


id: PBO:0110373
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HNRNPA3 pseudogene 17","termid":"PBO:0110373"}


id: GO:0099621
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-4-deoxy-4-formamido-beta-L-arabinopyranose + ditrans,octacis-undecaprenyl phosphate = UDP + 4-deoxy-4-formamido-alpha-L-arabinopyranosyl ditrans,octacis-undecaprenyl phosphate.","definition_xrefs":["GOC:dos","GOC:al","PMID:11706007","PMID:15695810"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pentosyltransferase activity","termid":"GO:0016763"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016757","GO:0016740"],"is_obsolete":false,"name":"undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase activity","secondary_identifiers":["GO:0103019","RHEA:27722","EC:2.4.2.53","MetaCyc:RXN0-3521"],"synonyms":[{"name":"Ara4FN transferase activity","type":"exact"},{"name":"undecaprenyl phosphate-L-Ara4FN transferase activity","type":"exact"},{"name":"undecaprenyl-phosphate Ara4FN transferase activity","type":"exact"}],"termid":"GO:0099621"}


id: PBO:0002019
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.1.-.-","termid":"PBO:0002019"}


id: PBO:0059981
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND4L pseudogene 1","termid":"PBO:0059981"}


id: MONDO:0000867
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete multiple pterygium syndrome (obsolete MONDO:0000867)","termid":"MONDO:0000867","xrefs":{"Monarch":{"xref_id":"0000867"}}}


id: SO:0001626
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant where at least one base of the final codon of an incompletely annotated transcript is changed.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terminator_codon_variant","termid":"SO:0001590"},{"relation_name":"is_a","term_name":"inframe_variant","termid":"SO:0001650"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"incomplete_terminal_codon_variant","secondary_identifiers":["http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences"],"synonyms":[{"name":"VEP:incomplete_terminal_codon_variant","type":"exact"},{"name":"incomplete terminal codon variant","type":"exact"},{"name":"partial_codon","type":"exact"}],"termid":"SO:0001626"}


id: GO:0000090
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell cycle phase during which chromosomes separate and migrate towards the poles of the spindle the as part of a mitotic cell cycle.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anaphase","termid":"GO:0051322"},{"relation_name":"part_of","term_name":"mitotic M phase","termid":"GO:0000087"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0000087"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0000087"],"is_obsolete":false,"name":"mitotic anaphase","termid":"GO:0000090"}


id: PBO:0041291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement C1s","termid":"PBO:0041291"}


id: MONDO:0007118
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any anhidrosis in which the cause of the disease is a mutation in the ITPR2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anhidrosis","termid":"MONDO:0006527"},{"relation_name":"is_a","term_name":"subcutaneous tissue disorder","termid":"MONDO:0019296"},{"relation_name":"is_a","term_name":"dermis disorder","termid":"MONDO:0021154"},{"relation_name":"is_a","term_name":"hereditary skin disorder","termid":"MONDO:0100118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"isolated anhidrosis with normal sweat glands","secondary_identifiers":["GARD:17843","OMIM:106190","MEDGEN:1800259","DOID:0060603","Orphanet:468666","UMLS:C5568836"],"synonyms":[{"name":"ANHD","type":"related"},{"name":"Dann-Epstein-Sohar syndrome","type":"exact"},{"name":"ITPR2 anhidrosis","type":"exact"},{"name":"anhidrosis caused by mutation in ITPR2","type":"exact"},{"name":"anhidrosis, isolated, with normal sweat glands","type":"related"},{"name":"isolated generalised anhidrosis with normal sweat glands","type":"related"},{"name":"isolated generalized anhidrosis with normal sweat glands","type":"related"}],"termid":"MONDO:0007118","xrefs":{"Monarch":{"xref_id":"0007118"}}}


id: GO:0048386
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of retinoic acid receptor signaling pathway activity.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of retinoic acid receptor signaling pathway","termid":"GO:0048385"},{"relation_name":"is_a","term_name":"positive regulation of intracellular signal transduction","termid":"GO:1902533"},{"relation_name":"positively_regulates","term_name":"retinoic acid receptor signaling pathway","termid":"GO:0048384"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of retinoic acid receptor signaling pathway","synonyms":[{"name":"activation of retinoic acid receptor signaling pathway","type":"narrow"},{"name":"positive regulation of RAR signaling pathway","type":"exact"},{"name":"positive regulation of retinoic acid receptor signalling pathway","type":"exact"},{"name":"stimulation of retinoic acid receptor signaling pathway","type":"narrow"},{"name":"up regulation of retinoic acid receptor signaling pathway","type":"exact"},{"name":"up-regulation of retinoic acid receptor signaling pathway","type":"exact"},{"name":"upregulation of retinoic acid receptor signaling pathway","type":"exact"}],"termid":"GO:0048386"}


id: PBO:0065372
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"presenilin enhancer, gamma-secretase subunit","termid":"PBO:0065372"}


id: MONDO:0007782
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyperthermia, cutaneous, with headaches and nausea","secondary_identifiers":["MEDGEN:374453","OMIM:145590","UMLS:C1840373","MESH:C564156"],"synonyms":[{"name":"farmer syndrome","type":"related"},{"name":"hyperthermia, cutaneous, with headaches and nausea","type":"exact"}],"termid":"MONDO:0007782","xrefs":{"Monarch":{"xref_id":"0007782"}}}


id: PBO:0057604
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 941-1","termid":"PBO:0057604"}


id: GO:0047105
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: NAD+ + 4-trimethylammoniobutanal = NADH + 4-trimethylammoniobutanoate.","definition_xrefs":["MetaCyc:1.2.1.47-RXN","EC:1.2.1.47"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor","termid":"GO:0016620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"4-trimethylammoniobutyraldehyde dehydrogenase activity","secondary_identifiers":["RHEA:17985","Reactome:R-HSA-71260"],"synonyms":[{"name":"4-N-trimethylaminobutyraldehyde dehydrogenase activity","type":"related"},{"name":"4-trimethylaminobutyraldehyde dehydrogenase activity","type":"related"},{"name":"4-trimethylammoniobutanal:NAD+ 1-oxidoreductase activity","type":"related"}],"termid":"GO:0047105"}


id: PR:000037081
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A tropomyosin cdc8 (Schizosaccharomyces pombe) that has been post-translationally modified to include an acetylated N-terminal methionine.","definition_xrefs":["PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tropomyosin cdc8 (Schizosaccharomyces pombe)","termid":"PR:000027986"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cdc8/Ac(M1)","pombase_gene_id":"SPAC27F1.02c","synonyms":[{"name":"PomBase_original_PRO_term_name: tropomyosin cdc8, acetylated form (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-cdc8/AcRes+","type":"exact"},{"name":"cdc8/Ac(M1)","type":"exact"}],"termid":"PR:000037081"}


id: MONDO:0008554
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"essential thrombocythemia","termid":"MONDO:0005029"},{"relation_name":"is_a","term_name":"familial thrombocytosis","termid":"MONDO:0019111"},{"relation_name":"is_a","term_name":"non-syndromic limb reduction defect","termid":"MONDO:0019713"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"thrombocythemia 1","secondary_identifiers":["UMLS:C3277671","MEDGEN:479301","OMIM:187950"],"synonyms":[{"name":"THCYT1","type":"related"},{"name":"thrombocythemia 1","type":"exact"},{"name":"thrombocythemia type 1","type":"exact"},{"name":"thrombocythemia, somatic","type":"exact"},{"name":"thrombocytosis 1","type":"related"}],"termid":"MONDO:0008554","xrefs":{"Monarch":{"xref_id":"0008554"}}}


id: GO:0080077
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to the oxygen atom of a trihydroxyferuloyl spermidine molecule.","definition_xrefs":["PMID:19077165"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-methyltransferase activity","termid":"GO:0008171"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016741","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"trihydroxyferuloyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity","termid":"GO:0080077"}


id: PBO:0062057
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily W member 4 pseudogene","termid":"PBO:0062057"}


id: PBO:0016108
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CASP family protein involved in Golgi vesicle transport Coy1 (predicted)","termid":"PBO:0016108"}


id: MONDO:0012903
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An autosomal recessive nonsyndromic deafness that has material basis in variation in the chromosome region 1q43-q44.","definition_xrefs":["DOID:0110502","PMID:18325041"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hearing loss, autosomal recessive","termid":"MONDO:0019588"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0019497"}],"interesting_parent_ids":["MONDO:0019497","MONDO:0006025"],"is_obsolete":false,"name":"autosomal recessive nonsyndromic hearing loss 45","secondary_identifiers":["OMIM:612433","UMLS:C3888030","GARD:22628","MEDGEN:854732"],"synonyms":[{"name":"DFNB45","type":"narrow"},{"name":"autosomal recessive deafness 45","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness 45","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness type 45","type":"narrow"},{"name":"deafness, autosomal recessive 45","type":"narrow"}],"termid":"MONDO:0012903","xrefs":{"Monarch":{"xref_id":"0012903"}}}


id: PBO:0082430
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Blocked reading frame otherwise encoding L-serine dehydratase","termid":"PBO:0082430"}


id: PBO:0034152
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-biomechanically_related_to","termid":"PBO:0034152"}


id: MONDO:0012565
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Fanconi anemia in which the cause of the disease is a mutation in the PALB2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Fanconi anemia","termid":"MONDO:0019391"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0021190"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0002280"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046","MONDO:0002280","MONDO:0021190","MONDO:0005066"],"is_obsolete":false,"name":"Fanconi anemia complementation group N","secondary_identifiers":["DOID:0111094","MEDGEN:372133","MESH:C563657","OMIM:610832","UMLS:C1835817","GARD:15500"],"synonyms":[{"name":"FANCN","type":"exact"},{"name":"Fanconi Anemia, complementation group type N","type":"exact"},{"name":"Fanconi anaemia caused by mutation in PALB2","type":"exact"},{"name":"Fanconi anaemia complementation group type N","type":"exact"},{"name":"Fanconi anemia caused by mutation in PALB2","type":"exact"},{"name":"Fanconi anemia complementation group N","type":"exact"},{"name":"Fanconi anemia complementation group type N","type":"exact"},{"name":"Fanconi anemia, complementation group N","type":"related"},{"name":"PALB2 Fanconi anaemia","type":"exact"},{"name":"PALB2 Fanconi anemia","type":"exact"}],"termid":"MONDO:0012565","xrefs":{"Monarch":{"xref_id":"0012565"}}}


id: GO:0047574
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-acetamidobutanoyl-CoA + H2O = 4-aminobutanoyl-CoA + acetate.","definition_xrefs":["EC:3.5.1.51","RHEA:22928"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"},{"relation_name":"is_a","term_name":"deacetylase activity","termid":"GO:0019213"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0019213"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0019213","GO:0003824","GO:0003674","GO:0016810"],"is_obsolete":false,"name":"4-acetamidobutyryl-CoA deacetylase activity","secondary_identifiers":["KEGG_REACTION:R04056","MetaCyc:4-ACETAMIDOBUTYRYL-COA-DEACETYLASE-RXN"],"synonyms":[{"name":"4-acetamidobutanoyl-CoA amidohydrolase activity","type":"related"},{"name":"aminobutyryl-CoA thiolesterase activity","type":"related"},{"name":"deacetylase-thiolesterase activity","type":"related"}],"termid":"GO:0047574"}


id: PBO:0065926
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rac family small GTPase 1","termid":"PBO:0065926"}


id: MONDO:0008811
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"XK aprosencephaly is a very rare syndromic type of cerebral malformation characterized by aprosencephaly (absence of telencephalon and diencephalon), oculo-facial anomalies (i.e. ocular hypotelorism or cyclopia, malformation/absence of nasal structures, cleft lip), preaxial limb defects (i.e. hypoplastic hands, absent halluces) and various other anomalies including ambiguous genitalia, imperforate anus, and vertebral anomalies. The syndrome is thought to have an autosomal recessive mode of inheritance.","definition_xrefs":["Orphanet:3469"],"direct_ancestors":[{"relation_name":"is_a","term_name":"brain disorder","termid":"MONDO:0005560"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"XK aprosencephaly","secondary_identifiers":["GARD:424","OMIM:207770","SCTID:277921008","icd11.foundation:1805259428","MESH:C536767","UMLS:C0795952","MEDGEN:167087"],"synonyms":[{"name":"Garcia-Lurie syndrome","type":"exact"},{"name":"XK aprosencephaly syndrome","type":"related"},{"name":"XK-aprosencephaly","type":"exact"},{"name":"XK-aprosencephaly syndrome","type":"related"},{"name":"Xk syndrome","type":"related"},{"name":"aprosencephaly syndrome","type":"related"},{"name":"aprosencephaly-atelencephaly syndrome","type":"related"},{"name":"atelencephaly","type":"related"}],"termid":"MONDO:0008811","xrefs":{"Monarch":{"xref_id":"0008811"}}}


id: PBO:0041045
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bromodomain containing 2","termid":"PBO:0041045"}


id: PBO:0084280
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Integral membrane protein of the ER; forms an ER-membrane associated protein complex with Slp1p; identified along with SLP1 in a screen for mutants defective in the unfolded protein response (UPR); proposed to function in the folding of integral membrane proteins; interacts genetically with MPS3; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies","termid":"PBO:0084280"}


id: GO:0099637
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of neurotransmitter receptors.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein transport","termid":"GO:0015031"},{"relation_name":"is_a","term_name":"protein-containing complex localization","termid":"GO:0031503"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"neurotransmitter receptor transport","termid":"GO:0099637"}


id: PBO:0031439
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-protein_mislocalized_to_nucleus_during_vegetative_growth","termid":"PBO:0031439"}


id: PBO:0067644
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 818, pseudogene","termid":"PBO:0067644"}


id: MONDO:0032862
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydrocephalus, congenital communicating, 1","secondary_identifiers":["MEDGEN:1684770","OMIM:618667","GARD:18090","UMLS:C5231454"],"synonyms":[{"name":"HYDCC1","type":"related"},{"name":"HYDROCEPHALUS, CONGENITAL COMMUNICATING, 1","type":"related"}],"termid":"MONDO:0032862","xrefs":{"Monarch":{"xref_id":"0032862"}}}


id: PBO:0079419
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin beta pseudogene 2","termid":"PBO:0079419"}


id: MONDO:0009066
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Nephropathic juvenile cystinosis is the intermediate form, in regards to severity and age of onset, of cystinosis, a metabolic disease characterized by an accumulation of cystine inside the lysosomes that causes damage in different organs and tissues, particularly in the kidneys and eyes.","definition_xrefs":["Orphanet:411634"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete nephropathy secondary to a storage or other metabolic disease (obsolete MONDO:0019743)","termid":"MONDO:0019743"},{"relation_name":"is_a","term_name":"inborn disorder of amino acid transport","termid":"MONDO:0019216"},{"relation_name":"is_a","term_name":"nephropathic cystinosis","termid":"MONDO:0100151"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002561"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0004736","MONDO:0005066","MONDO:0006025","MONDO:0002561"],"is_obsolete":false,"name":"juvenile nephropathic cystinosis","secondary_identifiers":["NANDO:1200163","icd11.foundation:422905632","ICD10EXP:E72.0+","MESH:C562683","SCTID:22830006","OMIM:219900","ICD10EXP:N16.3*","NANDO:2201235","GARD:17685","MEDGEN:75701","UMLS:C0268626"],"synonyms":[{"name":"cystinosis, intermediate","type":"related"},{"name":"cystinosis, late-onset juvenile or adolescent nephropathic","type":"exact"},{"name":"cystinosis, late-onset juvenile or adolescent nephropathic type","type":"related"},{"name":"intermediate cystinosis","type":"exact"},{"name":"juvenile cystinosis","type":"exact"},{"name":"juvenile nephropathic cystinosis","type":"exact"}],"termid":"MONDO:0009066","xrefs":{"Monarch":{"xref_id":"0009066"}}}


id: MONDO:0100483
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A type of drug-resistant tuberculosis that is resistant to all first- and second-line antitubercular drugs tested (isoniazid, rifampicin, streptomycin, ethambutol, pyrazinamide, ethionamide, para-aminosalicylic acid, cycloserine, ofloxacin, amikacin, ciprofloxacin, capreomycin, kanamycin).","definition_xrefs":["PMID:24809736","PMID:23641309"],"direct_ancestors":[{"relation_name":"is_a","term_name":"drug-resistant tuberculosis","termid":"MONDO:0041806"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"totally drug-resistant tuberculosis","synonyms":[{"name":"TDR-TB","type":"exact"}],"termid":"MONDO:0100483","xrefs":{"Monarch":{"xref_id":"0100483"}}}


id: PBO:0084915
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitotic spindle protein; interacts with components of the Dam1 (DASH) complex, its effector Sli15p, and microtubule-associated protein Bim1p; also localizes to nuclear microtubules and to the bud neck in a ring-shaped structure; inhibits dynein function","termid":"PBO:0084915"}


id: GO:0004667
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: prostaglandin H(2) = prostaglandin D(2).","definition_xrefs":["EC:5.3.99.2","RHEA:10600"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular oxidoreductase activity","termid":"GO:0016860"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0016853","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"prostaglandin-D synthase activity","secondary_identifiers":["KEGG_REACTION:R02266","Reactome:R-HSA-2161701","MetaCyc:PROSTAGLANDIN-D-SYNTHASE-RXN","Reactome:R-HSA-2161620"],"synonyms":[{"name":"(5,13)-(15S)-9alpha,11alpha-epidioxy-15-hydroxyprosta-5,13-dienoate D-isomerase activity","type":"related"},{"name":"PGD2 synthase activity","type":"related"},{"name":"PGH-PGD isomerase activity","type":"related"},{"name":"prostaglandin D2 synthase activity","type":"related"},{"name":"prostaglandin-H2 D-isomerase activity","type":"related"},{"name":"prostaglandin-R-prostaglandin D isomerase activity","type":"related"}],"termid":"GO:0004667"}


id: MONDO:0002881
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant mixed epithelial and mesenchymal neoplasm that arises from the vagina and is characterized by the presence of a malignant mesenchymal component and a benign or atypical mullerian-type epithelial component.","definition_xrefs":["NCIT:C40277"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"vaginal carcinosarcoma","termid":"MONDO:0006488"},{"relation_name":"is_a","term_name":"vaginal cancer","termid":"MONDO:0001402"},{"relation_name":"is_a","term_name":"adenosarcoma","termid":"MONDO:0005636"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"vaginal adenosarcoma","secondary_identifiers":["UMLS:C1519914","DOID:4117","MEDGEN:274378"],"synonyms":[{"name":"adenosarcoma of vagina","type":"exact"},{"name":"vagina adenosarcoma","type":"exact"},{"name":"vaginal Mullerian adenosarcoma","type":"exact"},{"name":"vaginal Müllerian adenosarcoma","type":"exact"},{"name":"vaginal adenosarcoma","type":"exact"}],"termid":"MONDO:0002881","xrefs":{"Monarch":{"xref_id":"0002881"}}}


id: GO:2000284
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cellular amino acid biosynthetic process.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of biosynthetic process","termid":"GO:0009891"},{"relation_name":"is_a","term_name":"positive regulation of amino acid metabolic process","termid":"GO:0045764"},{"relation_name":"is_a","term_name":"regulation of amino acid biosynthetic process","termid":"GO:2000282"},{"relation_name":"positively_regulates","term_name":"amino acid biosynthetic process","termid":"GO:0008652"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006520"},{"rel_name":"regulates","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0008150","GO:0006520"],"is_obsolete":false,"name":"positive regulation of amino acid biosynthetic process","synonyms":[{"name":"positive regulation of amino acid anabolism","type":"exact"},{"name":"positive regulation of amino acid biosynthesis","type":"exact"},{"name":"positive regulation of amino acid formation","type":"exact"},{"name":"positive regulation of amino acid synthesis","type":"exact"},{"name":"positive regulation of cellular amino acid biosynthetic process","type":"exact"}],"termid":"GO:2000284"}


id: GO:0098825
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The guanylylation of peptidyl-histidine to form (phospho-5'-guanosine)-L-histidine.","definition_xrefs":["RESID:AA0325"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-histidine guanylation (obsolete GO:0098825)","termid":"GO:0098825"}


id: GO:0052377
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process by which an organism avoids the effects of phytoalexins produced as a defense response by the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete evasion or tolerance by organism of symbiont-produced phytoalexins (obsolete GO:0052377)","synonyms":[{"name":"evasion or tolerance by organism of symbiont phytoalexins","type":"exact"},{"name":"evasion or tolerance by organism of symbiont-produced phytoalexins","type":"exact"},{"name":"evasion or tolerance of phytoalexins produced by symbiont in response to organism","type":"exact"},{"name":"symbiont phytoalexin detoxification","type":"narrow"}],"termid":"GO:0052377"}


id: MONDO:0971062
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An intellectual developmental disorder with language impairment and early-onset DOPA-responsive dystonia-parkinsonism in which the cause of the disease is a point mutation in the gene NR4A2.","definition_xrefs":["Orphanet:660012","MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intellectual developmental disorder with language impairment and early-onset DOPA-responsive dystonia-parkinsonism","termid":"MONDO:0859257"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0003441"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0003441"],"is_obsolete":false,"name":"developmental delay-language impairment-dopa responsive dystonia-parkinsonism syndrome due to a NR4A2 point mutation","secondary_identifiers":["MEDGEN:1863959","UMLS:C5925124"],"termid":"MONDO:0971062","xrefs":{"Monarch":{"xref_id":"0971062"}}}


id: PBO:0087564
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of structure-specific Mms4p-Mus81p endonuclease; cleaves branched DNA; involved in DNA repair, replication fork stability, and joint molecule formation/resolution during meiotic recombination; promotes template switching during break-induced replication (BIR), causing non-reciprocal translocations (NRTs); helix-hairpin-helix protein; phosphorylation of non-catalytic subunit Mms4p by Cdc28p and Cdcp during mitotic cell cycle activates function of Mms4p-Mus81p","termid":"PBO:0087564"}


id: MONDO:0015333
data:
  {"annotated_genes":["SJAG_03898","SJAG_04631","SJAG_04540","SJAG_01745","SJAG_04114","SJAG_04934"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86390],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0019569"},{"annotations":[86425],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0019570"},{"annotations":[86869],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0859147"},{"annotations":[87240],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010457"},{"annotations":[87193],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010196"},{"annotations":[86516],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009910"}]},"cv_name":"mondo","definition":"A group of rare genetic disorders which mimic physiological aging, making affected individuals appear to be older than they are.","definition_xrefs":["Wikipedia:Progeroid_syndromes"],"direct_ancestors":[{"relation_name":"is_a","term_name":"premature aging syndrome","termid":"MONDO:0019303"},{"relation_name":"is_a","term_name":"developmental defect during embryogenesis","termid":"MONDO:0019755"}],"gene_count":6,"genes_by_uniquename":{"SJAG_01745":null,"SJAG_03898":null,"SJAG_04114":null,"SJAG_04540":null,"SJAG_04631":null,"SJAG_04934":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019303"}],"interesting_parent_ids":["MONDO:0019303"],"is_obsolete":false,"name":"progeroid syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:19906","NANDO:2100221","Orphanet:139033","MEDGEN:1864204","UMLS:C5848146","DOID:0081332"],"termid":"MONDO:0015333","terms_by_termid":{"MONDO:0009910":null,"MONDO:0010196":null,"MONDO:0010457":null,"MONDO:0019569":null,"MONDO:0019570":null,"MONDO:0859147":null},"xrefs":{"Monarch":{"xref_id":"0015333"}}}


id: PBO:0064208
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasminogen activator, urokinase","termid":"PBO:0064208"}


id: MONDO:0017223
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The transitional form of Pelizaeus-Merzbacher disease (PMD) is the intermediate form of PMD.","definition_xrefs":["Orphanet:280224"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Pelizeaus-Merzbacher spectrum disorder","termid":"MONDO:0010714"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"Pelizaeus-Merzbacher disease, transitional form","secondary_identifiers":["GARD:21074","UMLS:C0751917","icd11.foundation:1471805474","MEDGEN:199764"],"synonyms":[{"name":"transitional PMD","type":"exact"}],"termid":"MONDO:0017223","xrefs":{"Monarch":{"xref_id":"0017223"}}}


id: SO:0002018
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A transcript variant occurring within a conserved region of an intron.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intron_variant","termid":"SO:0001627"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved_intron_variant","secondary_identifiers":["http://snpeff.sourceforge.net/SnpEff_manual.html"],"synonyms":[{"name":"Jannovar:conserved_intron_variant","type":"exact"},{"name":"conserved intron variant","type":"exact"},{"name":"snpEff:INTRON_CONSERVED","type":"exact"}],"termid":"SO:0002018"}


id: PBO:0054414
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1810","termid":"PBO:0054414"}


id: PATO:0000091
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000091 stress sensitivity (obsolete PATO:0000091)","termid":"PATO:0000091"}


id: FYPO:0004048
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of glutathione peroxidase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular process","termid":"FYPO:0000628"},{"relation_name":"is_a","term_name":"abnormal oxidoreductase activity","termid":"FYPO:0000689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000707","FYPO:0000654","FYPO:0000661","FYPO:0000652","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abnormal glutathione peroxidase activity","termid":"FYPO:0004048"}


id: FYPO:0000400
data:
  {"alleles_by_uniquename":{"SJAG_04332:allele-1":{"allele_type":"amino_acid_mutation","description":"I30T,T572P","gene_uniquename":"SJAG_04332","name":"cdc25-D9","uniquename":"SJAG_04332:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[119574],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007701"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which progression through the mitotic cell cycle is arrested at the G2/M transition, under conditions where arrest is not a normal occurrence.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle arrest at mitotic G2/M phase transition","termid":"FYPO:0000446"},{"relation_name":"is_a","term_name":"abnormal cell cycle arrest in mitotic interphase","termid":"FYPO:0001028"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04332":null},"genotype_count":1,"genotypes_by_uniquename":{"cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cdc25-D9(I30T,T572P aa)","display_uniquename":"cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04332:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000631","FYPO:0000002"],"is_obsolete":false,"name":"abnormal cell cycle arrest at mitotic G2/M phase transition","references_by_uniquename":{"PMID:25866389":null},"secondary_identifiers":["FYPO:0003373"],"single_locus_annotated_genes":["SJAG_04332"],"single_locus_genotype_uniquenames":["cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"abnormal cell cycle arrest at mitotic G2/M phase transition during mitotic cell cycle","type":"exact"},{"name":"abnormal cell cycle arrest at mitotic G2/M phase transition during vegetative growth","type":"exact"},{"name":"abnormal mitotic G2/M phase arrest","type":"exact"},{"name":"abnormal mitotic cell cycle arrest at G2/M phase transition","type":"exact"},{"name":"abolished mitotic G2/M phase transition","type":"related"},{"name":"cell cycle progression through the G2/M phase transition: arrested","type":"related"}],"termid":"FYPO:0000400","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000137":null,"FYPO:0007701":null,"FYPO_EXT:0000001":null}}


id: PBO:0080235
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vimentin type intermediate filament associated coiled-coil protein","termid":"PBO:0080235"}


id: GO:0046471
data:
  {"annotated_genes":["SJAG_04323","SJAG_04317","SJAG_00168","SJAG_03563","SJAG_03700"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71416],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035965"},{"annotations":[93383,71641,118148,80424],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032049"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving phosphatidylglycerols, any of a class of phospholipids in which the phosphatidyl group is esterified to the hydroxyl group of glycerol. They are important constituents of cell membranes.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycerophospholipid metabolic process","termid":"GO:0006650"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00168":null,"SJAG_03563":null,"SJAG_03700":null,"SJAG_04317":null,"SJAG_04323":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"phosphatidylglycerol metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"phosphatidylglycerol metabolism","type":"exact"}],"termid":"GO:0046471","terms_by_termid":{"GO:0032049":null,"GO:0035965":null}}


id: GO:0009086
data:
  {"annotated_genes":["SJAG_00309","SJAG_02293","SJAG_04459","SJAG_02689","SJAG_03671","SJAG_04425","SJAG_02290","SJAG_01466","SJAG_02972","SJAG_03712","SJAG_03152","SJAG_03614","SJAG_00395","SJAG_00234","SJAG_04042","SJAG_03881","SJAG_00881","SJAG_01404"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[64261,64639,71410,72227,74900,76754,79399,112277],"is_not":false,"summary":null,"term":"GO:0009086"},{"annotations":[68742,111401,65593,106314],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071266"},{"annotations":[79583,58760,78220,77263,78671,80460],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019509"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins.","definition_xrefs":["GOC:jl","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur amino acid biosynthetic process","termid":"GO:0000097"},{"relation_name":"is_a","term_name":"methionine metabolic process","termid":"GO:0006555"},{"relation_name":"is_a","term_name":"aspartate family amino acid biosynthetic process","termid":"GO:0009067"}],"gene_count":18,"genes_by_uniquename":{"SJAG_00234":null,"SJAG_00309":null,"SJAG_00395":null,"SJAG_00881":null,"SJAG_01404":null,"SJAG_01466":null,"SJAG_02290":null,"SJAG_02293":null,"SJAG_02689":null,"SJAG_02972":null,"SJAG_03152":null,"SJAG_03614":null,"SJAG_03671":null,"SJAG_03712":null,"SJAG_03881":null,"SJAG_04042":null,"SJAG_04425":null,"SJAG_04459":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0006520","GO:0006790","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"methionine biosynthetic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null,"GO_REF:0000108":null,"GO_REF:0000117":null},"synonyms":[{"name":"methionine anabolism","type":"exact"},{"name":"methionine biosynthesis","type":"exact"},{"name":"methionine formation","type":"exact"},{"name":"methionine synthesis","type":"exact"}],"termid":"GO:0009086","terms_by_termid":{"GO:0009086":null,"GO:0019509":null,"GO:0071266":null}}


id: MONDO:0010888
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The growth of endometrial tissue inside the muscular wall of the uterine corpus. Clinical manifestations include pain, dysmenorrhea, and menorrhagia.","definition_xrefs":["NCIT:C6996"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"endometriosis","termid":"MONDO:0005133"},{"relation_name":"is_a","term_name":"endometrial disorder","termid":"MONDO:0000931"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenomyosis","secondary_identifiers":["MESH:D062788","OMIM:600458","MEDGEN:1805484","UMLS:C5574708","icd11.foundation:171294592","ICD9:617.0","SCTID:237115002","DOID:288","ICD10CM:N80.0"],"synonyms":[{"name":"adenomyosis of the uterus","type":"exact"},{"name":"adenomyosis of uterus","type":"exact"},{"name":"endometriosis (disease) of myometrium","type":"exact"},{"name":"endometriosis interna","type":"exact"},{"name":"endometriosis of myometrium","type":"exact"},{"name":"endometriosis of uterus","type":"exact"},{"name":"endometriosis, myometrium","type":"exact"},{"name":"myometrium endometriosis (disease)","type":"exact"},{"name":"uterine adenomyosis","type":"exact"},{"name":"uterine corpus adenomyosis","type":"exact"},{"name":"uterus corpus adenomyosis","type":"exact"}],"termid":"MONDO:0010888","xrefs":{"Monarch":{"xref_id":"0010888"}}}


id: MONDO:0007282
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A cataract that has material basis in variation in the region 2pter-p24.","definition_xrefs":["DOID:0110232","PMID:15933805"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cataract","termid":"MONDO:0005129"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"cataract 29","secondary_identifiers":["OMIM:115800","UMLS:C3805409","GARD:18233","MEDGEN:811739"],"synonyms":[{"name":"CTRCT29","type":"related"},{"name":"cataract 29","type":"exact"},{"name":"cataract 29 coralliform","type":"exact"},{"name":"cataract 29, coralliform","type":"related"},{"name":"cataract type 29","type":"exact"}],"termid":"MONDO:0007282","xrefs":{"Monarch":{"xref_id":"0007282"}}}


id: PATO:0000202
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000202 long term memory (obsolete PATO:0000202)","termid":"PATO:0000202"}


id: _global:causal_relation_between_material_entity_and_a_process
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"A relationship that holds between a material entity and a process in which causality is involved, with either the material entity or some part of the material entity exerting some influence over the process, or the process influencing some aspect of the material entity.","direct_ancestors":[{"relation_name":"is_a","term_name":"causally_related_to","termid":"_global:causally_related_to"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"causal_relation_between_material_entity_and_a_process","secondary_identifiers":["RO:0002595"],"termid":"_global:causal_relation_between_material_entity_and_a_process"}


id: PBO:0091900
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wtf antidote-like meiotic drive suppressor Wtf5","termid":"PBO:0091900"}


id: PBO:0013123
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sequence orphan, localizing to double strand breaks Dbl1","termid":"PBO:0013123"}


id: GO:1900783
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of fumiquinazoline F.","definition_xrefs":["GOC:di","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete fumiquinazoline F catabolic process (obsolete GO:1900783)","synonyms":[{"name":"fumiquinazoline F breakdown","type":"exact"},{"name":"fumiquinazoline F catabolism","type":"exact"},{"name":"fumiquinazoline F degradation","type":"exact"}],"termid":"GO:1900783"}


id: MONDO:0060745
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intellectual developmental disorder with or without epilepsy or cerebellar ataxia","secondary_identifiers":["MEDGEN:1648354","OMIM:618060","UMLS:C4748041"],"synonyms":[{"name":"IDDECA","type":"related"},{"name":"intellectual developmental disorder with or without epilepsy or cerebellar ataxia","type":"exact"}],"termid":"MONDO:0060745","xrefs":{"Monarch":{"xref_id":"0060745"}}}


