# genes

id: SJAG_04465
data:
  {"cv_annotations":{"biological_process":[{"annotations":[79738],"is_not":false,"summary":null,"term":"GO:0000147"},{"annotations":[111331],"is_not":false,"summary":null,"term":"GO:2000369"},{"annotations":[111332],"is_not":false,"summary":null,"term":"GO:0023052"}],"cellular_component":[{"annotations":[111328],"is_not":false,"summary":null,"term":"GO:0030479"},{"annotations":[111329],"is_not":false,"summary":null,"term":"GO:0005829"}],"molecular_function":[{"annotations":[68851],"is_not":false,"summary":null,"term":"GO:0005524"},{"annotations":[79736],"is_not":false,"summary":null,"term":"GO:0004674"}]},"dbxrefs":["EnsemblGenomes-Tr:EEB09269","InterPro:IPR000719","InterPro:IPR008271","EnsemblGenomes-Gn:SJAG_04465","InterPro:IPR011009","UniProtKB/TrEMBL:B6K6W5","GOA:B6K6W5"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":444,"start":407}},{"range":{"end":592,"start":547}},{"range":{"end":682,"start":643}},{"range":{"end":812,"start":784}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"ppk24","uniquename":"SJAG_04469"},{"name":"cdc7","uniquename":"SJAG_04468"},{"uniquename":"SJAG_06431"},{"name":"pnc1","uniquename":"SJAG_04467"},{"uniquename":"SJAG_04466"},{"name":"ppk29","uniquename":"SJAG_04465"},{"name":"pim1","uniquename":"SJAG_04464"},{"uniquename":"SJAG_04463"},{"name":"rga5","uniquename":"SJAG_04462"},{"name":"nak1","uniquename":"SJAG_04461"},{"uniquename":"SJAG_06428"}],"genes_by_uniquename":{"HGNC:18041":null,"HGNC:19679":null,"SJAG_04465":null,"SPBC557.04":null,"YBR059C":null,"YIL095W":null,"YNL020C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Protein kinase domain","id":"PF00069","interpro_description":"Protein kinase domain","interpro_id":"IPR000719","interpro_name":"Prot_kinase_dom","locations":[{"end":310,"start":40}],"match_end":310,"match_start":40,"name":"Pkinase"},{"dbname":"PROSITE_PATTERNS","description":"Serine/Threonine protein kinases active-site signature.","id":"PS00108","interpro_description":"Serine/threonine-protein kinase, active site","interpro_id":"IPR008271","interpro_name":"Ser/Thr_kinase_AS","locations":[{"end":182,"start":170}],"match_end":182,"match_start":170,"name":"PROTEIN_KINASE_ST"},{"dbname":"PROSITE_PROFILES","description":"Protein kinase domain profile.","id":"PS50011","interpro_description":"Protein kinase domain","interpro_id":"IPR000719","interpro_name":"Prot_kinase_dom","locations":[{"end":322,"start":36}],"match_end":322,"match_start":36,"name":"PROTEIN_KINASE_DOM"},{"dbname":"SMART","id":"SM00220","interpro_description":"Protein kinase domain","interpro_id":"IPR000719","interpro_name":"Prot_kinase_dom","locations":[{"end":313,"start":36}],"match_end":313,"match_start":36,"name":"serkin_6"},{"dbname":"SUPERFAMILY","id":"SSF56112","interpro_description":"Protein kinase-like domain superfamily","interpro_id":"IPR011009","interpro_name":"Kinase-like_dom_sf","locations":[{"end":312,"start":37}],"match_end":312,"match_start":37,"name":"Protein kinase-like (PK-like)"},{"dbname":"GENE3D","id":"G3DSA:1.10.510.10","locations":[{"end":338,"start":27}],"match_end":338,"match_start":27,"name":"Transferase(Phosphotransferase) domain 1"},{"dbname":"PANTHER","id":"PTHR22967","locations":[{"end":805,"start":15}],"match_end":805,"match_start":15,"name":"SERINE/THREONINE PROTEIN KINASE"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":444,"start":407},{"end":592,"start":547},{"end":682,"start":643},{"end":812,"start":784}],"match_end":812,"match_start":407,"name":"disorder_prediction"},{"dbname":"MOBIDB-Low-complexity","description":"consensus disorder prediction","id":"mobidb-lite-Low-complexity","locations":[{"end":444,"start":424}],"match_end":444,"match_start":424,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polar","description":"consensus disorder prediction","id":"mobidb-lite-Polar","locations":[{"end":570,"start":557},{"end":592,"start":581},{"end":668,"start":646}],"match_end":668,"match_start":557,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.3","end_pos":816882,"start_pos":814271,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":444,"start":423}},{"range":{"end":754,"start":732}}],"name":"ppk29","ortholog_annotations":[{"gene_uniquename":"SJAG_04465","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:18041","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04465","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:19679","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04465","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC557.04","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04465","ortholog_taxonid":4932,"ortholog_uniquename":"YBR059C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04465","ortholog_taxonid":4932,"ortholog_uniquename":"YBR059C","reference_uniquename":"PMID:26896847"},{"gene_uniquename":"SJAG_04465","ortholog_taxonid":4932,"ortholog_uniquename":"YIL095W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04465","ortholog_taxonid":4932,"ortholog_uniquename":"YIL095W","reference_uniquename":"PMID:26896847"},{"gene_uniquename":"SJAG_04465","ortholog_taxonid":4932,"ortholog_uniquename":"YNL020C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04465","ortholog_taxonid":4932,"ortholog_uniquename":"YNL020C","reference_uniquename":"PMID:26896847"}],"product":"Ark1/Prk1 family protein kinase Ppk29","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0005524"],"not-binding":["GO:0004674"]}},"subset_termids":["GO:0004672","GO:0015629","GO:0005829","GO:0140096","GO:0016301","GO:0023052","GO:0005938","GO:0030479","GO:0030036","GO:0016192"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000147":null,"GO:0004674":null,"GO:0005524":null,"GO:0005829":null,"GO:0023052":null,"GO:0030479":null,"GO:2000369":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04465.1"],"transcripts_by_uniquename":{"SJAG_04465.1":null},"uniprot_identifier":"B6K6W5","uniquename":"SJAG_04465"}


id: SJAG_04466
data:
  {"cv_annotations":{"biological_process":[{"annotations":[111337],"is_not":false,"summary":null,"term":"GO:0070086"}],"cellular_component":[{"annotations":[111335],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[111336],"is_not":false,"summary":null,"term":"GO:0005886"}],"molecular_function":[{"annotations":[111338],"is_not":false,"summary":null,"term":"GO:0005509"},{"annotations":[111339],"is_not":false,"summary":null,"term":"GO:0030674"}]},"dbxrefs":["EnsemblGenomes-Tr:EEB09270","InterPro:IPR011022","UniProtKB/TrEMBL:B6K6W6","EnsemblGenomes-Gn:SJAG_04466","InterPro:IPR014752","InterPro:IPR014756"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"spn7","uniquename":"SJAG_04470"},{"name":"ppk24","uniquename":"SJAG_04469"},{"name":"cdc7","uniquename":"SJAG_04468"},{"uniquename":"SJAG_06431"},{"name":"pnc1","uniquename":"SJAG_04467"},{"uniquename":"SJAG_04466"},{"name":"ppk29","uniquename":"SJAG_04465"},{"name":"pim1","uniquename":"SJAG_04464"},{"uniquename":"SJAG_04463"},{"name":"rga5","uniquename":"SJAG_04462"},{"name":"nak1","uniquename":"SJAG_04461"}],"genes_by_uniquename":{"SJAG_04466":null,"SPBC557.05":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Arrestin (or S-antigen), C-terminal domain","id":"PF02752","interpro_description":"Arrestin C-terminal-like domain","interpro_id":"IPR011022","interpro_name":"Arrestin_C-like","locations":[{"end":364,"start":220}],"match_end":364,"match_start":220,"name":"Arrestin_C"},{"dbname":"SUPERFAMILY","id":"SSF81296","interpro_description":"Immunoglobulin E-set","interpro_id":"IPR014756","interpro_name":"Ig_E-set","locations":[{"end":365,"start":218}],"match_end":365,"match_start":218,"name":"E set domains"},{"dbname":"GENE3D","id":"G3DSA:2.60.40.640","interpro_description":"Arrestin-like, C-terminal","interpro_id":"IPR014752","interpro_name":"Arrestin-like_C","locations":[{"end":364,"start":196}],"match_end":364,"match_start":196}],"location":{"chromosome_name":"supercont5.3","end_pos":813849,"start_pos":812513,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":264,"start":250}},{"range":{"end":368,"start":354}},{"range":{"end":417,"start":408}}],"ortholog_annotations":[{"gene_uniquename":"SJAG_04466","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC557.05","reference_uniquename":"PMID:21511999"}],"product":"arrestin, meiosis specific","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21511999":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0005509"],"not-binding":["GO:0030674"]}},"subset_termids":["GO:0060090","GO:0005886","GO:0005829","GO:0016192"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005509":null,"GO:0005829":null,"GO:0005886":null,"GO:0030674":null,"GO:0070086":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04466.1"],"transcripts_by_uniquename":{"SJAG_04466.1":null},"uniprot_identifier":"B6K6W6","uniquename":"SJAG_04466"}


id: SJAG_04467
data:
  {"cv_annotations":{"biological_process":[{"annotations":[109923],"is_not":false,"summary":null,"term":"GO:0019358"}],"cellular_component":[{"annotations":[109920],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[109921],"is_not":false,"summary":null,"term":"GO:0005634"},{"annotations":[109922],"is_not":false,"summary":null,"term":"GO:0005777"}],"molecular_function":[{"annotations":[109924],"is_not":false,"summary":null,"term":"GO:0008936"}]},"dbxrefs":["EnsemblGenomes-Tr:EEB09271","InterPro:IPR000868","EnsemblGenomes-Gn:SJAG_04467","InterPro:IPR036380","GOA:B6K6W7","UniProtKB/TrEMBL:B6K6W7"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"bxi1","uniquename":"SJAG_04471"},{"name":"spn7","uniquename":"SJAG_04470"},{"name":"ppk24","uniquename":"SJAG_04469"},{"name":"cdc7","uniquename":"SJAG_04468"},{"uniquename":"SJAG_06431"},{"name":"pnc1","uniquename":"SJAG_04467"},{"uniquename":"SJAG_04466"},{"name":"ppk29","uniquename":"SJAG_04465"},{"name":"pim1","uniquename":"SJAG_04464"},{"uniquename":"SJAG_04463"},{"name":"rga5","uniquename":"SJAG_04462"}],"genes_by_uniquename":{"SJAG_04467":null,"SPBC365.20c":null,"YGL037C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Isochorismatase domain","id":"PF00857","interpro_description":"Isochorismatase-like domain","interpro_id":"IPR000868","interpro_name":"Isochorismatase-like_dom","locations":[{"end":210,"start":5}],"match_end":210,"match_start":5,"name":"Isochorismatase"},{"dbname":"SUPERFAMILY","id":"SSF52499","interpro_description":"Isochorismatase-like superfamily","interpro_id":"IPR036380","interpro_name":"Isochorismatase-like_sf","locations":[{"end":212,"start":3}],"match_end":212,"match_start":3,"name":"Isochorismatase-like hydrolases"},{"dbname":"GENE3D","id":"G3DSA:3.40.50.850","interpro_description":"Isochorismatase-like superfamily","interpro_id":"IPR036380","interpro_name":"Isochorismatase-like_sf","locations":[{"end":213,"start":2}],"match_end":213,"match_start":2},{"dbname":"PANTHER","id":"PTHR11080","interpro_description":"Isochorismatase Family Nicotinamidases","interpro_id":"IPR052347","interpro_name":"Isochorismatase_Nicotinamidase","locations":[{"end":211,"start":2}],"match_end":211,"match_start":2,"name":"PYRAZINAMIDASE/NICOTINAMIDASE"}],"location":{"chromosome_name":"supercont5.3","end_pos":812491,"start_pos":811850,"strand":"forward"},"name":"pnc1","ortholog_annotations":[{"gene_uniquename":"SJAG_04467","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC365.20c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04467","ortholog_taxonid":4932,"ortholog_uniquename":"YGL037C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04467","ortholog_taxonid":4932,"ortholog_uniquename":"YGL037C","reference_uniquename":"PMID:26896847"}],"product":"nicotinamidase Pnc1","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0008936"]}},"subset_termids":["GO:0055086","GO:0016810","GO:0005777","GO:0005829","GO:0005634"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005634":null,"GO:0005777":null,"GO:0005829":null,"GO:0008936":null,"GO:0019358":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04467.1"],"transcripts_by_uniquename":{"SJAG_04467.1":null},"uniprot_identifier":"B6K6W7","uniquename":"SJAG_04467"}


id: SJAG_04468
data:
  {"binding_sites":[{"assigned_by":"UniProtKB","ligand":"ATP","range":{"end":40,"start":40}}],"coiled_coil_coords":[{"range":{"end":547,"start":527}}],"cv_annotations":{"biological_process":[{"annotations":[106701],"is_not":false,"summary":null,"term":"GO:0140281"},{"annotations":[106702],"is_not":false,"summary":null,"term":"GO:0031028"}],"cellular_component":[{"annotations":[70512],"is_not":false,"summary":null,"term":"GO:0005737"},{"annotations":[106699],"is_not":false,"summary":null,"term":"GO:0071958"},{"annotations":[106700],"is_not":false,"summary":null,"term":"GO:0071957"}],"molecular_function":[{"annotations":[57429],"is_not":false,"summary":null,"term":"GO:0005524"},{"annotations":[70511],"is_not":false,"summary":null,"term":"GO:0004674"}]},"dbxrefs":["InterPro:IPR016024","EnsemblGenomes-Gn:SJAG_04468","InterPro:IPR008271","InterPro:IPR000225","InterPro:IPR011989","InterPro:IPR017441","InterPro:IPR011009","GOA:B6K6W8","EnsemblGenomes-Tr:EEB09272","InterPro:IPR000719","UniProtKB/TrEMBL:B6K6W8"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":443,"start":391}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"uniquename":"SJAG_04473"},{"name":"sac3","uniquename":"SJAG_04472"},{"name":"bxi1","uniquename":"SJAG_04471"},{"name":"spn7","uniquename":"SJAG_04470"},{"name":"ppk24","uniquename":"SJAG_04469"},{"name":"cdc7","uniquename":"SJAG_04468"},{"uniquename":"SJAG_06431"},{"name":"pnc1","uniquename":"SJAG_04467"},{"uniquename":"SJAG_04466"},{"name":"ppk29","uniquename":"SJAG_04465"},{"name":"pim1","uniquename":"SJAG_04464"}],"genes_by_uniquename":{"SJAG_04468":null,"SPBC21.06c":null,"YAR019C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Protein kinase domain","id":"PF00069","interpro_description":"Protein kinase domain","interpro_id":"IPR000719","interpro_name":"Prot_kinase_dom","locations":[{"end":260,"start":14}],"match_end":260,"match_start":14,"name":"Pkinase"},{"dbname":"CDD","description":"STKc_Cdc7_like","id":"cd06627","locations":[{"end":260,"start":11}],"match_end":260,"match_start":11,"name":"STKc_Cdc7_like"},{"dbname":"PROSITE_PATTERNS","description":"Protein kinases ATP-binding region signature.","id":"PS00107","interpro_description":"Protein kinase, ATP binding site","interpro_id":"IPR017441","interpro_name":"Protein_kinase_ATP_BS","locations":[{"end":40,"start":16}],"match_end":40,"match_start":16,"name":"PROTEIN_KINASE_ATP"},{"dbname":"PROSITE_PATTERNS","description":"Serine/Threonine protein kinases active-site signature.","id":"PS00108","interpro_description":"Serine/threonine-protein kinase, active site","interpro_id":"IPR008271","interpro_name":"Ser/Thr_kinase_AS","locations":[{"end":140,"start":128}],"match_end":140,"match_start":128,"name":"PROTEIN_KINASE_ST"},{"dbname":"PROSITE_PROFILES","description":"Protein kinase domain profile.","id":"PS50011","interpro_description":"Protein kinase domain","interpro_id":"IPR000719","interpro_name":"Prot_kinase_dom","locations":[{"end":260,"start":10}],"match_end":260,"match_start":10,"name":"PROTEIN_KINASE_DOM"},{"dbname":"PROSITE_PROFILES","description":"Armadillo/plakoglobin ARM repeat profile.","id":"PS50176","interpro_description":"Armadillo","interpro_id":"IPR000225","interpro_name":"Armadillo","locations":[{"end":868,"start":821}],"match_end":868,"match_start":821,"name":"ARM_REPEAT"},{"dbname":"SMART","id":"SM00220","interpro_description":"Protein kinase domain","interpro_id":"IPR000719","interpro_name":"Prot_kinase_dom","locations":[{"end":260,"start":10}],"match_end":260,"match_start":10,"name":"serkin_6"},{"dbname":"FUNFAM","description":"Aurora kinase A","id":"G3DSA:3.30.200.20:FF:000042","locations":[{"end":92,"start":6}],"match_end":92,"match_start":6},{"dbname":"FUNFAM","description":"Maternal embryonic leucine zipper kinase","id":"G3DSA:1.10.510.10:FF:000571","locations":[{"end":271,"start":7}],"match_end":271,"match_start":7},{"dbname":"SUPERFAMILY","id":"SSF56112","interpro_description":"Protein kinase-like domain superfamily","interpro_id":"IPR011009","interpro_name":"Kinase-like_dom_sf","locations":[{"end":284,"start":12}],"match_end":284,"match_start":12,"name":"Protein kinase-like (PK-like)"},{"dbname":"SUPERFAMILY","id":"SSF48371","interpro_description":"Armadillo-type fold","interpro_id":"IPR016024","interpro_name":"ARM-type_fold","locations":[{"end":935,"start":554}],"match_end":935,"match_start":554,"name":"ARM repeat"},{"dbname":"GENE3D","id":"G3DSA:1.25.10.10","interpro_description":"Armadillo-like helical","interpro_id":"IPR011989","interpro_name":"ARM-like","locations":[{"end":790,"start":546},{"end":1060,"start":812}],"match_end":1060,"match_start":546},{"dbname":"GENE3D","id":"G3DSA:1.10.510.10","locations":[{"end":297,"start":9}],"match_end":297,"match_start":9,"name":"Transferase(Phosphotransferase) domain 1"},{"dbname":"PANTHER","id":"PTHR48012","interpro_description":"STE20/SPS1-related Proline-Alanine-rich Kinase","interpro_id":"IPR050629","interpro_name":"STE20/SPS1-PAK","locations":[{"end":566,"start":6}],"match_end":566,"match_start":6,"name":"STERILE20-LIKE KINASE, ISOFORM B-RELATED"},{"dbname":"COILS","id":"Coil","locations":[{"end":547,"start":527}],"match_end":547,"match_start":527,"name":"Coil"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":443,"start":391}],"match_end":443,"match_start":391,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polar","description":"consensus disorder prediction","id":"mobidb-lite-Polar","locations":[{"end":401,"start":391},{"end":427,"start":418}],"match_end":427,"match_start":391,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polyampholyte","description":"consensus disorder prediction","id":"mobidb-lite-Polyampholyte","locations":[{"end":417,"start":407}],"match_end":417,"match_start":407,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.3","end_pos":810885,"start_pos":807054,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":540,"start":508}},{"range":{"end":683,"start":667}},{"range":{"end":788,"start":778}}],"name":"cdc7","ortholog_annotations":[{"gene_uniquename":"SJAG_04468","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC21.06c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04468","ortholog_taxonid":4932,"ortholog_uniquename":"YAR019C","reference_uniquename":"PMID:29761456"}],"product":"SIN signalling serine/threonine protein kinase Cdc7","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0005524"],"not-binding":["GO:0004674"]}},"subset_termids":["GO:0140096","GO:0015630","GO:0005816","GO:0016301","GO:0004672","GO:0000281","GO:0023052"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0004674":null,"GO:0005524":null,"GO:0005737":null,"GO:0031028":null,"GO:0071957":null,"GO:0071958":null,"GO:0140281":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04468.1"],"transcripts_by_uniquename":{"SJAG_04468.1":null},"uniprot_identifier":"B6K6W8","uniquename":"SJAG_04468"}


id: SJAG_04469
data:
  {"binding_sites":[{"assigned_by":"UniProtKB","ligand":"ATP","range":{"end":166,"start":166}}],"cv_annotations":{"biological_process":[{"annotations":[106707],"is_not":false,"summary":null,"term":"GO:0000086"},{"annotations":[77561],"is_not":false,"summary":null,"term":"GO:0035556"},{"annotations":[77562],"is_not":false,"summary":null,"term":"GO:0000226"},{"annotations":[106708],"is_not":false,"summary":null,"term":"GO:1902267"}],"cellular_component":[{"annotations":[106705],"is_not":false,"summary":null,"term":"GO:0005739"},{"annotations":[106706],"is_not":false,"summary":null,"term":"GO:0005634"}],"molecular_function":[{"annotations":[66082],"is_not":false,"summary":null,"term":"GO:0005524"},{"annotations":[106711],"is_not":false,"summary":null,"term":"GO:0004674"}]},"dbxrefs":["InterPro:IPR017441","EnsemblGenomes-Gn:SJAG_04469","InterPro:IPR000719","InterPro:IPR008271","UniProtKB/TrEMBL:B6K6W9","EnsemblGenomes-Tr:EEB09273","GOA:B6K6W9","InterPro:IPR011009"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"ret3","uniquename":"SJAG_04474"},{"uniquename":"SJAG_04473"},{"name":"sac3","uniquename":"SJAG_04472"},{"name":"bxi1","uniquename":"SJAG_04471"},{"name":"spn7","uniquename":"SJAG_04470"},{"name":"ppk24","uniquename":"SJAG_04469"},{"name":"cdc7","uniquename":"SJAG_04468"},{"uniquename":"SJAG_06431"},{"name":"pnc1","uniquename":"SJAG_04467"},{"uniquename":"SJAG_04466"},{"name":"ppk29","uniquename":"SJAG_04465"}],"genes_by_uniquename":{"SJAG_04469":null,"SPBC21.07c":null,"YJR059W":null,"YKL198C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Protein kinase domain","id":"PF00069","interpro_description":"Protein kinase domain","interpro_id":"IPR000719","interpro_name":"Prot_kinase_dom","locations":[{"end":428,"start":135}],"match_end":428,"match_start":135,"name":"Pkinase"},{"dbname":"PROSITE_PATTERNS","description":"Protein kinases ATP-binding region signature.","id":"PS00107","interpro_description":"Protein kinase, ATP binding site","interpro_id":"IPR017441","interpro_name":"Protein_kinase_ATP_BS","locations":[{"end":166,"start":138}],"match_end":166,"match_start":138,"name":"PROTEIN_KINASE_ATP"},{"dbname":"PROSITE_PATTERNS","description":"Serine/Threonine protein kinases active-site signature.","id":"PS00108","interpro_description":"Serine/threonine-protein kinase, active site","interpro_id":"IPR008271","interpro_name":"Ser/Thr_kinase_AS","locations":[{"end":276,"start":264}],"match_end":276,"match_start":264,"name":"PROTEIN_KINASE_ST"},{"dbname":"PROSITE_PROFILES","description":"Protein kinase domain profile.","id":"PS50011","interpro_description":"Protein kinase domain","interpro_id":"IPR000719","interpro_name":"Prot_kinase_dom","locations":[{"end":428,"start":132}],"match_end":428,"match_start":132,"name":"PROTEIN_KINASE_DOM"},{"dbname":"SMART","id":"SM00220","interpro_description":"Protein kinase domain","interpro_id":"IPR000719","interpro_name":"Prot_kinase_dom","locations":[{"end":428,"start":132}],"match_end":428,"match_start":132,"name":"serkin_6"},{"dbname":"SUPERFAMILY","id":"SSF56112","interpro_description":"Protein kinase-like domain superfamily","interpro_id":"IPR011009","interpro_name":"Kinase-like_dom_sf","locations":[{"end":439,"start":125}],"match_end":439,"match_start":125,"name":"Protein kinase-like (PK-like)"},{"dbname":"GENE3D","id":"G3DSA:1.10.510.10","locations":[{"end":449,"start":123}],"match_end":449,"match_start":123,"name":"Transferase(Phosphotransferase) domain 1"},{"dbname":"PANTHER","id":"PTHR24346","locations":[{"end":430,"start":128}],"match_end":430,"match_start":128,"name":"MAP/MICROTUBULE AFFINITY-REGULATING KINASE"}],"location":{"chromosome_name":"supercont5.3","end_pos":806787,"start_pos":805334,"strand":"forward"},"name":"ppk24","ortholog_annotations":[{"gene_uniquename":"SJAG_04469","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC21.07c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04469","ortholog_taxonid":4932,"ortholog_uniquename":"YJR059W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04469","ortholog_taxonid":4932,"ortholog_uniquename":"YKL198C","reference_uniquename":"PMID:29761456"}],"product":"serine/threonine protein kinase Ppk24","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0005524"],"not-binding":["GO:0004674"]}},"subset_termids":["GO:0140096","GO:0023052","GO:0005634","GO:0044772","GO:0005739","GO:0016301","GO:0000226","GO:0055085","GO:0004672"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000086":null,"GO:0000226":null,"GO:0004674":null,"GO:0005524":null,"GO:0005634":null,"GO:0005739":null,"GO:0035556":null,"GO:1902267":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04469.1"],"transcripts_by_uniquename":{"SJAG_04469.1":null},"uniprot_identifier":"B6K6W9","uniquename":"SJAG_04469"}


id: SJAG_04470
data:
  {"cv_annotations":{"biological_process":[{"annotations":[75030],"is_not":false,"summary":null,"term":"GO:0061640"},{"annotations":[106333],"is_not":false,"summary":null,"term":"GO:0070583"}],"cellular_component":[{"annotations":[75024],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[106327],"is_not":false,"summary":null,"term":"GO:0032175"},{"annotations":[106328],"is_not":false,"summary":null,"term":"GO:0032152"},{"annotations":[75027],"is_not":false,"summary":null,"term":"GO:0015630"},{"annotations":[106330],"is_not":false,"summary":null,"term":"GO:0005634"},{"annotations":[106331],"is_not":false,"summary":null,"term":"GO:0032169"}],"molecular_function":[{"annotations":[62873],"is_not":false,"summary":null,"term":"GO:0005525"},{"annotations":[75026],"is_not":false,"summary":null,"term":"GO:0003924"},{"annotations":[106336],"is_not":false,"summary":null,"term":"GO:0008289"},{"annotations":[75029],"is_not":false,"summary":null,"term":"GO:0060090"}]},"dbxrefs":["InterPro:IPR027417","EnsemblGenomes-Tr:EEB09274","InterPro:IPR016491","GOA:B6K6X0","InterPro:IPR030379","UniProtKB/TrEMBL:B6K6X0","EnsemblGenomes-Gn:SJAG_04470"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"rps2","uniquename":"SJAG_04475"},{"name":"ret3","uniquename":"SJAG_04474"},{"uniquename":"SJAG_04473"},{"name":"sac3","uniquename":"SJAG_04472"},{"name":"bxi1","uniquename":"SJAG_04471"},{"name":"spn7","uniquename":"SJAG_04470"},{"name":"ppk24","uniquename":"SJAG_04469"},{"name":"cdc7","uniquename":"SJAG_04468"},{"uniquename":"SJAG_06431"},{"name":"pnc1","uniquename":"SJAG_04467"},{"uniquename":"SJAG_04466"}],"genes_by_uniquename":{"SJAG_04470":null,"SPBC19F8.01c":null,"YJR076C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Septin","id":"PF00735","interpro_description":"Septin-type guanine nucleotide-binding (G) domain","interpro_id":"IPR030379","interpro_name":"G_SEPTIN_dom","locations":[{"end":286,"start":12}],"match_end":286,"match_start":12,"name":"Septin"},{"dbname":"CDD","description":"CDC_Septin","id":"cd01850","interpro_description":"Septin","interpro_id":"IPR016491","interpro_name":"Septin","locations":[{"end":286,"start":12}],"match_end":286,"match_start":12,"name":"CDC_Septin"},{"dbname":"PROSITE_PROFILES","description":"Septin-type guanine nucleotide-binding (G) domain profile.","id":"PS51719","interpro_description":"Septin-type guanine nucleotide-binding (G) domain","interpro_id":"IPR030379","interpro_name":"G_SEPTIN_dom","locations":[{"end":286,"start":12}],"match_end":286,"match_start":12,"name":"G_SEPTIN"},{"dbname":"SUPERFAMILY","id":"SSF52540","interpro_description":"P-loop containing nucleoside triphosphate hydrolase","interpro_id":"IPR027417","interpro_name":"P-loop_NTPase","locations":[{"end":185,"start":11}],"match_end":185,"match_start":11,"name":"P-loop containing nucleoside triphosphate hydrolases"},{"dbname":"GENE3D","id":"G3DSA:3.40.50.300","interpro_description":"P-loop containing nucleoside triphosphate hydrolase","interpro_id":"IPR027417","interpro_name":"P-loop_NTPase","locations":[{"end":285,"start":11}],"match_end":285,"match_start":11},{"dbname":"PANTHER","id":"PTHR18884","locations":[{"end":335,"start":11}],"match_end":335,"match_start":11,"name":"SEPTIN"}],"location":{"chromosome_name":"supercont5.3","end_pos":804958,"start_pos":803659,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":205,"start":194}}],"name":"spn7","ortholog_annotations":[{"gene_uniquename":"SJAG_04470","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC19F8.01c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04470","ortholog_taxonid":4932,"ortholog_uniquename":"YJR076C","reference_uniquename":"PMID:26896847"}],"product":"meiotic septin Spn7","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0008289","GO:0005525"],"not-binding":["GO:0060090","GO:0003924"]}},"subset_termids":["GO:0030437","GO:0015630","GO:0005829","GO:0003924","GO:0005634","GO:0061024","GO:0060090","GO:0008289","GO:0005938"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0003924":null,"GO:0005525":null,"GO:0005634":null,"GO:0005829":null,"GO:0008289":null,"GO:0015630":null,"GO:0032152":null,"GO:0032169":null,"GO:0032175":null,"GO:0060090":null,"GO:0061640":null,"GO:0070583":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04470.1"],"transcripts_by_uniquename":{"SJAG_04470.1":null},"uniprot_identifier":"B6K6X0","uniquename":"SJAG_04470"}


id: SJAG_04471
data:
  {"cv_annotations":{"biological_process":[{"annotations":[66127],"is_not":false,"summary":null,"term":"GO:0070588"},{"annotations":[117683],"is_not":false,"summary":null,"term":"GO:0019722"},{"annotations":[77594],"is_not":false,"summary":null,"term":"GO:0030968"}],"cellular_component":[{"annotations":[117680],"is_not":false,"summary":null,"term":"GO:0005789"},{"annotations":[117681],"is_not":false,"summary":null,"term":"GO:0000329"}],"molecular_function":[{"annotations":[77592],"is_not":false,"summary":null,"term":"GO:0005262"}]},"dbxrefs":["GOA:B6K6X1","EnsemblGenomes-Tr:EEB09275","EnsemblGenomes-Gn:SJAG_04471","InterPro:IPR006214","UniProtKB/TrEMBL:B6K6X1"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"rps20","uniquename":"SJAG_04476"},{"name":"rps2","uniquename":"SJAG_04475"},{"name":"ret3","uniquename":"SJAG_04474"},{"uniquename":"SJAG_04473"},{"name":"sac3","uniquename":"SJAG_04472"},{"name":"bxi1","uniquename":"SJAG_04471"},{"name":"spn7","uniquename":"SJAG_04470"},{"name":"ppk24","uniquename":"SJAG_04469"},{"name":"cdc7","uniquename":"SJAG_04468"},{"uniquename":"SJAG_06431"},{"name":"pnc1","uniquename":"SJAG_04467"}],"genes_by_uniquename":{"HGNC:24257":null,"SJAG_04471":null,"SPCC576.04":null,"YNL305C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Inhibitor of apoptosis-promoting Bax1","id":"PF01027","interpro_description":"Bax inhibitor 1-related","interpro_id":"IPR006214","interpro_name":"Bax_inhibitor_1-related","locations":[{"end":249,"start":49}],"match_end":249,"match_start":49,"name":"Bax1-I"},{"dbname":"PANTHER","id":"PTHR23291","interpro_description":"Bax inhibitor 1-related","interpro_id":"IPR006214","interpro_name":"Bax_inhibitor_1-related","locations":[{"end":250,"start":30}],"match_end":250,"match_start":30,"name":"BAX INHIBITOR-RELATED"}],"location":{"chromosome_name":"supercont5.3","end_pos":803323,"start_pos":802550,"strand":"reverse"},"name":"bxi1","ortholog_annotations":[{"gene_uniquename":"SJAG_04471","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:24257","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04471","ortholog_taxonid":4896,"ortholog_uniquename":"SPCC576.04","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04471","ortholog_taxonid":4932,"ortholog_uniquename":"YNL305C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04471","ortholog_taxonid":4932,"ortholog_uniquename":"YNL305C","reference_uniquename":"PMID:26896847"}],"product":"BAX inhibitor family protein Bxi1","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0005262"]}},"subset_termids":["GO:0022857","GO:0005789","GO:0055085","GO:0023052","GO:0005783","GO:0005773"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000329":null,"GO:0005262":null,"GO:0005789":null,"GO:0019722":null,"GO:0030968":null,"GO:0070588":null},"tm_domain_coords":[{"assigned_by":"TMHMM","range":{"end":79,"start":57}},{"assigned_by":"TMHMM","range":{"end":105,"start":86}},{"assigned_by":"TMHMM","range":{"end":137,"start":115}},{"assigned_by":"TMHMM","range":{"end":158,"start":139}},{"assigned_by":"TMHMM","range":{"end":190,"start":168}},{"assigned_by":"TMHMM","range":{"end":219,"start":197}},{"assigned_by":"TMHMM","range":{"end":251,"start":229}}],"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04471.1"],"transcripts_by_uniquename":{"SJAG_04471.1":null},"uniprot_identifier":"B6K6X1","uniquename":"SJAG_04471"}


id: SJAG_04472
data:
  {"coiled_coil_coords":[{"range":{"end":131,"start":111}},{"range":{"end":751,"start":731}}],"cv_annotations":{"biological_process":[{"annotations":[77027],"is_not":false,"summary":null,"term":"GO:0006406"},{"annotations":[117692],"is_not":false,"summary":null,"term":"GO:0006611"},{"annotations":[65413],"is_not":false,"summary":null,"term":"GO:0042274"}],"cellular_component":[{"annotations":[117686],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[117688],"is_not":false,"summary":null,"term":"GO:0005643"},{"annotations":[77028],"is_not":false,"summary":null,"term":"GO:0070390"}],"mondo":[{"annotations":[86703],"is_not":false,"summary":null,"term":"MONDO:0029131"}]},"dbxrefs":["EnsemblGenomes-Tr:EEB09276","GOA:B6K6X2","InterPro:IPR000717","InterPro:IPR005062","InterPro:IPR017173","EnsemblGenomes-Gn:SJAG_04472","UniProtKB/TrEMBL:B6K6X2"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":76,"start":1}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"rpt3","uniquename":"SJAG_04477"},{"name":"rps20","uniquename":"SJAG_04476"},{"name":"rps2","uniquename":"SJAG_04475"},{"name":"ret3","uniquename":"SJAG_04474"},{"uniquename":"SJAG_04473"},{"name":"sac3","uniquename":"SJAG_04472"},{"name":"bxi1","uniquename":"SJAG_04471"},{"name":"spn7","uniquename":"SJAG_04470"},{"name":"ppk24","uniquename":"SJAG_04469"},{"name":"cdc7","uniquename":"SJAG_04468"},{"uniquename":"SJAG_06431"}],"genes_by_uniquename":{"HGNC:30179":null,"HGNC:6946":null,"SJAG_04472":null,"SPCC576.05":null,"YDR159W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"SAC3/GANP family","id":"PF03399","interpro_description":"SAC3/GANP/THP3, conserved domain","interpro_id":"IPR005062","interpro_name":"SAC3/GANP/THP3_conserved","locations":[{"end":411,"start":110}],"match_end":411,"match_start":110,"name":"SAC3_GANP"},{"dbname":"PROSITE_PROFILES","description":"PCI domain profile.","id":"PS50250","interpro_description":"Proteasome component (PCI) domain","interpro_id":"IPR000717","interpro_name":"PCI_dom","locations":[{"end":436,"start":242}],"match_end":436,"match_start":242,"name":"PCI"},{"dbname":"FUNFAM","description":"Nuclear mRNA export protein SAC3","id":"G3DSA:1.25.40.990:FF:000008","locations":[{"end":470,"start":155}],"match_end":470,"match_start":155},{"dbname":"GENE3D","id":"G3DSA:1.25.40.990","locations":[{"end":473,"start":155}],"match_end":473,"match_start":155},{"dbname":"PANTHER","id":"PTHR12436","interpro_description":"SAC3/GANP/THP3","interpro_id":"IPR045107","interpro_name":"SAC3/GANP/THP3","locations":[{"end":943,"start":3}],"match_end":943,"match_start":3,"name":"80 KDA MCM3-ASSOCIATED PROTEIN"},{"dbname":"PIRSF","id":"PIRSF037320","interpro_description":"Nuclear mRNA export protein Sac3","interpro_id":"IPR017173","interpro_name":"Sac3","locations":[{"end":554,"start":56},{"end":1030,"start":582}],"match_end":1030,"match_start":56,"name":"Sac3"},{"dbname":"COILS","id":"Coil","locations":[{"end":131,"start":111},{"end":751,"start":731}],"match_end":751,"match_start":111,"name":"Coil"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":76,"start":1}],"match_end":76,"match_start":1,"name":"disorder_prediction"},{"dbname":"MOBIDB-Low-complexity","description":"consensus disorder prediction","id":"mobidb-lite-Low-complexity","locations":[{"end":39,"start":27}],"match_end":39,"match_start":27,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polyampholyte","description":"consensus disorder prediction","id":"mobidb-lite-Polyampholyte","locations":[{"end":76,"start":46}],"match_end":76,"match_start":46,"name":"disorder_prediction"},{"dbname":"MOBIDB-Positive-Polyelectrolyte","description":"consensus disorder prediction","id":"mobidb-lite-Positive-Polyelectrolyte","locations":[{"end":26,"start":10}],"match_end":26,"match_start":10,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.3","end_pos":802159,"start_pos":798769,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":38,"start":23}},{"range":{"end":691,"start":676}},{"range":{"end":1060,"start":1051}}],"name":"sac3","ortholog_annotations":[{"gene_uniquename":"SJAG_04472","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:30179","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04472","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:6946","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04472","ortholog_taxonid":4896,"ortholog_uniquename":"SPCC576.05","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04472","ortholog_taxonid":4932,"ortholog_uniquename":"YDR159W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04472","ortholog_taxonid":4932,"ortholog_uniquename":"YDR159W","reference_uniquename":"PMID:26896847"}],"product":"TREX2 complex subunit Sac3","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{},"subset_termids":["GO:0005643","GO:0005634","GO:0042254","GO:0005829","GO:0006913"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005643":null,"GO:0005829":null,"GO:0006406":null,"GO:0006611":null,"GO:0042274":null,"GO:0070390":null,"MONDO:0029131":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04472.1"],"transcripts_by_uniquename":{"SJAG_04472.1":null},"uniprot_identifier":"B6K6X2","uniquename":"SJAG_04472"}


id: SJAG_04473
data:
  {"cv_annotations":{"biological_process":[{"annotations":[117697],"is_not":false,"summary":null,"term":"GO:0032543"}],"cellular_component":[{"annotations":[71040],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[117695],"is_not":false,"summary":null,"term":"GO:0005759"}],"molecular_function":[{"annotations":[58039],"is_not":false,"summary":null,"term":"GO:0005524"},{"annotations":[58040],"is_not":false,"summary":null,"term":"GO:0003723"},{"annotations":[71038],"is_not":false,"summary":null,"term":"GO:0004831"}],"mondo":[{"annotations":[87594],"is_not":false,"summary":null,"term":"MONDO:0013307"}]},"dbxrefs":["EnsemblGenomes-Tr:EEB09277","InterPro:IPR001412","GOA:B6K6X3","InterPro:IPR002942","InterPro:IPR036986","InterPro:IPR002307","InterPro:IPR014729","UniProtKB/TrEMBL:B6K6X3","InterPro:IPR002305","EnsemblGenomes-Gn:SJAG_04473","InterPro:IPR024088"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"rpl15a","uniquename":"SJAG_04478"},{"name":"rpt3","uniquename":"SJAG_04477"},{"name":"rps20","uniquename":"SJAG_04476"},{"name":"rps2","uniquename":"SJAG_04475"},{"name":"ret3","uniquename":"SJAG_04474"},{"uniquename":"SJAG_04473"},{"name":"sac3","uniquename":"SJAG_04472"},{"name":"bxi1","uniquename":"SJAG_04471"},{"name":"spn7","uniquename":"SJAG_04470"},{"name":"ppk24","uniquename":"SJAG_04469"},{"name":"cdc7","uniquename":"SJAG_04468"}],"genes_by_uniquename":{"HGNC:24249":null,"SJAG_04473":null,"SPCC576.06c":null,"YPL097W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"tRNA synthetases class I (W and Y)","id":"PF00579","interpro_description":"Aminoacyl-tRNA synthetase, class Ic","interpro_id":"IPR002305","interpro_name":"aa-tRNA-synth_Ic","locations":[{"end":337,"start":30}],"match_end":337,"match_start":30,"name":"tRNA-synt_1b"},{"dbname":"CDD","description":"TyrRS_core","id":"cd00805","interpro_description":"Tyrosine-tRNA ligase","interpro_id":"IPR002307","interpro_name":"Tyr-tRNA-ligase","locations":[{"end":318,"start":31}],"match_end":318,"match_start":31,"name":"TyrRS_core"},{"dbname":"PROSITE_PATTERNS","description":"Aminoacyl-transfer RNA synthetases class-I signature.","id":"PS00178","interpro_description":"Aminoacyl-tRNA synthetase, class I, conserved site","interpro_id":"IPR001412","interpro_name":"aa-tRNA-synth_I_CS","locations":[{"end":48,"start":38}],"match_end":48,"match_start":38,"name":"AA_TRNA_LIGASE_I"},{"dbname":"PROSITE_PROFILES","description":"S4 RNA-binding domain profile.","id":"PS50889","locations":[{"end":443,"start":380}],"match_end":443,"match_start":380,"name":"S4"},{"dbname":"PRINTS","description":"Tyrosyl-tRNA synthetase signature","id":"PR01040","interpro_description":"Tyrosine-tRNA ligase","interpro_id":"IPR002307","interpro_name":"Tyr-tRNA-ligase","locations":[{"end":64,"start":42},{"end":191,"start":176},{"end":219,"start":197},{"end":243,"start":231}],"match_end":243,"match_start":42,"name":"TRNASYNTHTYR"},{"dbname":"FUNFAM","description":"Tyrosine--tRNA ligase","id":"G3DSA:1.10.240.10:FF:000001","locations":[{"end":341,"start":238}],"match_end":341,"match_start":238},{"dbname":"SUPERFAMILY","id":"SSF52374","locations":[{"end":338,"start":7}],"match_end":338,"match_start":7,"name":"Nucleotidylyl transferase"},{"dbname":"SUPERFAMILY","id":"SSF55174","locations":[{"end":440,"start":379}],"match_end":440,"match_start":379,"name":"Alpha-L RNA-binding motif"},{"dbname":"GENE3D","id":"G3DSA:3.40.50.620","interpro_description":"Rossmann-like alpha/beta/alpha sandwich fold","interpro_id":"IPR014729","interpro_name":"Rossmann-like_a/b/a_fold","locations":[{"end":237,"start":3}],"match_end":237,"match_start":3,"name":"HUPs"},{"dbname":"GENE3D","id":"G3DSA:1.10.240.10","locations":[{"end":346,"start":238}],"match_end":346,"match_start":238},{"dbname":"GENE3D","id":"G3DSA:3.10.290.10","interpro_description":"RNA-binding S4 domain superfamily","interpro_id":"IPR036986","interpro_name":"S4_RNA-bd_sf","locations":[{"end":443,"start":354}],"match_end":443,"match_start":354},{"dbname":"PANTHER","id":"PTHR11766","interpro_description":"Tyrosine-tRNA ligase, bacterial-type","interpro_id":"IPR024088","interpro_name":"Tyr-tRNA-ligase_bac-type","locations":[{"end":440,"start":7}],"match_end":440,"match_start":7,"name":"TYROSYL-TRNA SYNTHETASE"},{"dbname":"NCBIFAM","description":"tyrosine--tRNA ligase","id":"TIGR00234","interpro_description":"Tyrosine-tRNA ligase","interpro_id":"IPR002307","interpro_name":"Tyr-tRNA-ligase","locations":[{"end":439,"start":14}],"match_end":439,"match_start":14,"name":"tyrS"}],"location":{"chromosome_name":"supercont5.3","end_pos":798691,"start_pos":797243,"strand":"forward"},"ortholog_annotations":[{"gene_uniquename":"SJAG_04473","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:24249","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04473","ortholog_taxonid":4896,"ortholog_uniquename":"SPCC576.06c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04473","ortholog_taxonid":4932,"ortholog_uniquename":"YPL097W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04473","ortholog_taxonid":4932,"ortholog_uniquename":"YPL097W","reference_uniquename":"PMID:26896847"}],"product":"mitochondrial tyrosine-tRNA ligase","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0003723","GO:0005524"],"not-binding":["GO:0004831"]}},"subset_termids":["MONDO:0002280","GO:0016874","GO:0140098","MONDO:0005336","MONDO:0004069","MONDO:0005570","GO:0005739","GO:0140101","GO:0140053","MONDO:0005066","GO:0005829"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0003723":null,"GO:0004831":null,"GO:0005524":null,"GO:0005759":null,"GO:0005829":null,"GO:0032543":null,"MONDO:0013307":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04473.1"],"transcripts_by_uniquename":{"SJAG_04473.1":null},"uniprot_identifier":"B6K6X3","uniquename":"SJAG_04473"}


id: SJAG_04474
data:
  {"cv_annotations":{"biological_process":[{"annotations":[71248],"is_not":false,"summary":null,"term":"GO:0006891"},{"annotations":[71246],"is_not":false,"summary":null,"term":"GO:0006886"},{"annotations":[71247],"is_not":false,"summary":null,"term":"GO:0006890"}],"cellular_component":[{"annotations":[71249],"is_not":false,"summary":null,"term":"GO:0030126"},{"annotations":[117702],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[58288],"is_not":false,"summary":null,"term":"GO:0000139"},{"annotations":[117703],"is_not":false,"summary":null,"term":"GO:0005634"}]},"dbxrefs":["InterPro:IPR011012","UniProtKB/TrEMBL:B6K6X4","InterPro:IPR039652","GOA:B6K6X4","EnsemblGenomes-Tr:EEB09278","InterPro:IPR022775","EnsemblGenomes-Gn:SJAG_04474"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"bzz1","uniquename":"SJAG_04479"},{"name":"rpl15a","uniquename":"SJAG_04478"},{"name":"rpt3","uniquename":"SJAG_04477"},{"name":"rps20","uniquename":"SJAG_04476"},{"name":"rps2","uniquename":"SJAG_04475"},{"name":"ret3","uniquename":"SJAG_04474"},{"uniquename":"SJAG_04473"},{"name":"sac3","uniquename":"SJAG_04472"},{"name":"bxi1","uniquename":"SJAG_04471"},{"name":"spn7","uniquename":"SJAG_04470"},{"name":"ppk24","uniquename":"SJAG_04469"}],"genes_by_uniquename":{"HGNC:19356":null,"HGNC:2243":null,"SJAG_04474":null,"SPCC576.07":null,"YPL010W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Clathrin adaptor complex small chain","id":"PF01217","interpro_description":"AP complex, mu/sigma subunit","interpro_id":"IPR022775","interpro_name":"AP_mu_sigma_su","locations":[{"end":153,"start":8}],"match_end":153,"match_start":8,"name":"Clat_adaptor_s"},{"dbname":"FUNFAM","description":"Coatomer subunit zeta","id":"G3DSA:3.30.450.60:FF:000013","locations":[{"end":154,"start":1}],"match_end":154,"match_start":1},{"dbname":"SUPERFAMILY","id":"SSF64356","interpro_description":"Longin-like domain superfamily","interpro_id":"IPR011012","interpro_name":"Longin-like_dom_sf","locations":[{"end":153,"start":8}],"match_end":153,"match_start":8,"name":"SNARE-like"},{"dbname":"GENE3D","id":"G3DSA:3.30.450.60","locations":[{"end":154,"start":1}],"match_end":154,"match_start":1},{"dbname":"PANTHER","id":"PTHR11043","interpro_description":"Coatomer subunit zeta","interpro_id":"IPR039652","interpro_name":"Coatomer_zeta","locations":[{"end":186,"start":1}],"match_end":186,"match_start":1,"name":"ZETA-COAT PROTEIN"}],"location":{"chromosome_name":"supercont5.3","end_pos":796795,"start_pos":796220,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":74,"start":63}}],"name":"ret3","ortholog_annotations":[{"gene_uniquename":"SJAG_04474","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:19356","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04474","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:2243","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04474","ortholog_taxonid":4896,"ortholog_uniquename":"SPCC576.07","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04474","ortholog_taxonid":4932,"ortholog_uniquename":"YPL010W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04474","ortholog_taxonid":4932,"ortholog_uniquename":"YPL010W","reference_uniquename":"PMID:26896847"}],"product":"coatomer zeta subunit","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{},"subset_termids":["GO:0031410","GO:0005794","GO:0005634","GO:0005829","GO:0016192"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000139":null,"GO:0005634":null,"GO:0005829":null,"GO:0006886":null,"GO:0006890":null,"GO:0006891":null,"GO:0030126":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04474.1"],"transcripts_by_uniquename":{"SJAG_04474.1":null},"uniprot_identifier":"B6K6X4","uniquename":"SJAG_04474"}


id: SJAG_04475
data:
  {"cv_annotations":{"biological_process":[{"annotations":[117710],"is_not":false,"summary":null,"term":"GO:0002181"}],"cellular_component":[{"annotations":[76261],"is_not":false,"summary":null,"term":"GO:0022627"},{"annotations":[117709],"is_not":false,"summary":null,"term":"GO:0032040"}],"molecular_function":[{"annotations":[64463],"is_not":false,"summary":null,"term":"GO:0003723"},{"annotations":[76259],"is_not":false,"summary":null,"term":"GO:0003735"}]},"dbxrefs":["EnsemblGenomes-Gn:SJAG_04475","GOA:B6K6X5","InterPro:IPR005324","InterPro:IPR005711","InterPro:IPR014721","InterPro:IPR000851","InterPro:IPR013810","InterPro:IPR020568","UniProtKB/TrEMBL:B6K6X5","InterPro:IPR018192","EnsemblGenomes-Tr:EEB09279"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":26,"start":1}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"dbp5","uniquename":"SJAG_04480"},{"name":"bzz1","uniquename":"SJAG_04479"},{"name":"rpl15a","uniquename":"SJAG_04478"},{"name":"rpt3","uniquename":"SJAG_04477"},{"name":"rps20","uniquename":"SJAG_04476"},{"name":"rps2","uniquename":"SJAG_04475"},{"name":"ret3","uniquename":"SJAG_04474"},{"uniquename":"SJAG_04473"},{"name":"sac3","uniquename":"SJAG_04472"},{"name":"bxi1","uniquename":"SJAG_04471"},{"name":"spn7","uniquename":"SJAG_04470"}],"genes_by_uniquename":{"HGNC:10404":null,"SJAG_04475":null,"SPCC576.08c":null,"YGL123W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Ribosomal protein S5, C-terminal domain","id":"PF03719","interpro_description":"Small ribosomal subunit protein uS5, C-terminal","interpro_id":"IPR005324","interpro_name":"Ribosomal_uS5_C","locations":[{"end":228,"start":155}],"match_end":228,"match_start":155,"name":"Ribosomal_S5_C"},{"dbname":"PFAM","description":"Ribosomal protein S5, N-terminal domain","id":"PF00333","interpro_description":"Small ribosomal subunit protein uS5, N-terminal","interpro_id":"IPR013810","interpro_name":"Ribosomal_uS5_N","locations":[{"end":135,"start":71}],"match_end":135,"match_start":71,"name":"Ribosomal_S5"},{"dbname":"PROSITE_PATTERNS","description":"Ribosomal protein S5 signature.","id":"PS00585","interpro_description":"Small ribosomal subunit protein uS5, N-terminal, conserved site","interpro_id":"IPR018192","interpro_name":"Ribosomal_uS5_N_CS","locations":[{"end":120,"start":88}],"match_end":120,"match_start":88,"name":"RIBOSOMAL_S5"},{"dbname":"PROSITE_PROFILES","description":"S5 double stranded RNA-binding domain profile.","id":"PS50881","interpro_description":"Small ribosomal subunit protein uS5, N-terminal","interpro_id":"IPR013810","interpro_name":"Ribosomal_uS5_N","locations":[{"end":134,"start":71}],"match_end":134,"match_start":71,"name":"S5_DSRBD"},{"dbname":"FUNFAM","description":"40S ribosomal protein S2","id":"G3DSA:3.30.230.10:FF:000004","locations":[{"end":227,"start":134}],"match_end":227,"match_start":134},{"dbname":"FUNFAM","description":"40S ribosomal protein S2","id":"G3DSA:3.30.160.20:FF:000002","locations":[{"end":133,"start":29}],"match_end":133,"match_start":29},{"dbname":"SUPERFAMILY","id":"SSF54211","interpro_description":"Ribosomal protein uS5 domain 2-type superfamily","interpro_id":"IPR020568","interpro_name":"Ribosomal_Su5_D2-typ_SF","locations":[{"end":227,"start":147}],"match_end":227,"match_start":147,"name":"Ribosomal protein S5 domain 2-like"},{"dbname":"SUPERFAMILY","id":"SSF54768","locations":[{"end":136,"start":65}],"match_end":136,"match_start":65,"name":"dsRNA-binding domain-like"},{"dbname":"GENE3D","id":"G3DSA:3.30.230.10","interpro_description":"Small ribosomal subunit protein uS5 domain 2-type fold, subgroup","interpro_id":"IPR014721","interpro_name":"Ribsml_uS5_D2-typ_fold_subgr","locations":[{"end":227,"start":134}],"match_end":227,"match_start":134},{"dbname":"GENE3D","id":"G3DSA:3.30.160.20","locations":[{"end":133,"start":29}],"match_end":133,"match_start":29},{"dbname":"PANTHER","id":"PTHR13718","interpro_description":"Small ribosomal subunit protein uS5","interpro_id":"IPR000851","interpro_name":"Ribosomal_uS5","locations":[{"end":216,"start":22}],"match_end":216,"match_start":22,"name":"RIBOSOMAL S SUBUNIT"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":26,"start":1}],"match_end":26,"match_start":1,"name":"disorder_prediction"},{"dbname":"MOBIDB-Positive-Polyelectrolyte","description":"consensus disorder prediction","id":"mobidb-lite-Positive-Polyelectrolyte","locations":[{"end":22,"start":10}],"match_end":22,"match_start":10,"name":"disorder_prediction"},{"dbname":"NCBIFAM","description":"30S ribosomal protein S5","id":"TIGR01020","interpro_description":"Small ribosomal subunit protein uS5, eukaryotic/archaeal","interpro_id":"IPR005711","interpro_name":"Ribosomal_uS5_euk/arc","locations":[{"end":231,"start":25}],"match_end":231,"match_start":25,"name":"uS5_euk_arch"}],"location":{"chromosome_name":"supercont5.3","end_pos":795830,"start_pos":795081,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":20,"start":6}},{"range":{"end":213,"start":207}}],"name":"rps2","ortholog_annotations":[{"gene_uniquename":"SJAG_04475","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:10404","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04475","ortholog_taxonid":4896,"ortholog_uniquename":"SPCC576.08c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04475","ortholog_taxonid":4932,"ortholog_uniquename":"YGL123W","reference_uniquename":"PMID:29761456"}],"product":"40S ribosomal protein S2","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0003723"],"not-binding":["GO:0003735"]}},"subset_termids":["GO:0030684","GO:0002181","GO:0022626","GO:0005829","GO:0005198"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0002181":null,"GO:0003723":null,"GO:0003735":null,"GO:0022627":null,"GO:0032040":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04475.1"],"transcripts_by_uniquename":{"SJAG_04475.1":null},"uniprot_identifier":"B6K6X5","uniquename":"SJAG_04475"}


id: SJAG_04476
data:
  {"cv_annotations":{"biological_process":[{"annotations":[117715],"is_not":false,"summary":null,"term":"GO:0002181"},{"annotations":[117716],"is_not":false,"summary":null,"term":"GO:0042254"}],"cellular_component":[{"annotations":[70774],"is_not":false,"summary":null,"term":"GO:0022627"}],"molecular_function":[{"annotations":[70773],"is_not":false,"summary":null,"term":"GO:0003735"}]},"dbxrefs":["GOA:B6K6X6","InterPro:IPR027486","InterPro:IPR005729","EnsemblGenomes-Tr:EEB09280","InterPro:IPR001848","EnsemblGenomes-Gn:SJAG_04476","UniProtKB/TrEMBL:B6K6X6","InterPro:IPR036838"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"srm1","uniquename":"SJAG_04481"},{"name":"dbp5","uniquename":"SJAG_04480"},{"name":"bzz1","uniquename":"SJAG_04479"},{"name":"rpl15a","uniquename":"SJAG_04478"},{"name":"rpt3","uniquename":"SJAG_04477"},{"name":"rps20","uniquename":"SJAG_04476"},{"name":"rps2","uniquename":"SJAG_04475"},{"name":"ret3","uniquename":"SJAG_04474"},{"uniquename":"SJAG_04473"},{"name":"sac3","uniquename":"SJAG_04472"},{"name":"bxi1","uniquename":"SJAG_04471"}],"genes_by_uniquename":{"HGNC:10405":null,"SJAG_04476":null,"SPCC576.09":null,"YHL015W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Ribosomal protein S10p/S20e","id":"PF00338","interpro_description":"Small ribosomal subunit protein uS10 domain","interpro_id":"IPR027486","interpro_name":"Ribosomal_uS10_dom","locations":[{"end":115,"start":21}],"match_end":115,"match_start":21,"name":"Ribosomal_S10"},{"dbname":"SMART","id":"SM01403","interpro_description":"Small ribosomal subunit protein uS10 domain","interpro_id":"IPR027486","interpro_name":"Ribosomal_uS10_dom","locations":[{"end":115,"start":21}],"match_end":115,"match_start":21,"name":"Ribosomal_S10_2"},{"dbname":"PRINTS","description":"Ribosomal protein S10 family signature","id":"PR00971","interpro_description":"Small ribosomal subunit protein uS10","interpro_id":"IPR001848","interpro_name":"Ribosomal_uS10","locations":[{"end":32,"start":19},{"end":69,"start":54},{"end":90,"start":76}],"match_end":90,"match_start":19,"name":"RIBOSOMALS10"},{"dbname":"FUNFAM","description":"40S ribosomal protein S20","id":"G3DSA:3.30.70.600:FF:000002","locations":[{"end":118,"start":3}],"match_end":118,"match_start":3},{"dbname":"SUPERFAMILY","id":"SSF54999","interpro_description":"Small ribosomal subunit protein uS10 domain superfamily","interpro_id":"IPR036838","interpro_name":"Ribosomal_uS10_dom_sf","locations":[{"end":116,"start":19}],"match_end":116,"match_start":19,"name":"Ribosomal protein S10"},{"dbname":"GENE3D","id":"G3DSA:3.30.70.600","interpro_description":"Small ribosomal subunit protein uS10 domain superfamily","interpro_id":"IPR036838","interpro_name":"Ribosomal_uS10_dom_sf","locations":[{"end":118,"start":1}],"match_end":118,"match_start":1,"name":"Ribosomal protein S10 domain"},{"dbname":"PANTHER","id":"PTHR11700","interpro_description":"Small ribosomal subunit protein uS10","interpro_id":"IPR001848","interpro_name":"Ribosomal_uS10","locations":[{"end":117,"start":12}],"match_end":117,"match_start":12,"name":"30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER"},{"dbname":"HAMAP","description":"Small ribosomal subunit protein uS10 [rpsJ].","id":"MF_00508","interpro_description":"Small ribosomal subunit protein uS10","interpro_id":"IPR001848","interpro_name":"Ribosomal_uS10","locations":[{"end":116,"start":17}],"match_end":116,"match_start":17,"name":"Ribosomal_S10"},{"dbname":"NCBIFAM","description":"30S ribosomal protein S10","id":"TIGR01046","interpro_description":"Small ribosomal subunit protein uS10, eukaryotic/archaeal","interpro_id":"IPR005729","interpro_name":"Ribosomal_uS10_euk/arc","locations":[{"end":116,"start":18}],"match_end":116,"match_start":18,"name":"uS10_euk_arch"}],"location":{"chromosome_name":"supercont5.3","end_pos":794861,"start_pos":794505,"strand":"reverse"},"name":"rps20","ortholog_annotations":[{"gene_uniquename":"SJAG_04476","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:10405","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04476","ortholog_taxonid":4896,"ortholog_uniquename":"SPCC576.09","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04476","ortholog_taxonid":4932,"ortholog_uniquename":"YHL015W","reference_uniquename":"PMID:29761456"}],"product":"40S ribosomal protein S20","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0003735"]}},"subset_termids":["GO:0005829","GO:0005198","GO:0002181","GO:0042254","GO:0022626"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0002181":null,"GO:0003735":null,"GO:0022627":null,"GO:0042254":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04476.1"],"transcripts_by_uniquename":{"SJAG_04476.1":null},"uniprot_identifier":"B6K6X6","uniquename":"SJAG_04476"}


id: SJAG_04477
data:
  {"coiled_coil_coords":[{"range":{"end":54,"start":20}}],"cv_annotations":{"biological_process":[{"annotations":[61571],"is_not":false,"summary":null,"term":"GO:1901800"},{"annotations":[73990],"is_not":false,"summary":null,"term":"GO:0043161"}],"cellular_component":[{"annotations":[117718],"is_not":false,"summary":null,"term":"GO:0000785"},{"annotations":[117720],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[117721],"is_not":false,"summary":null,"term":"GO:0034399"},{"annotations":[73991],"is_not":false,"summary":null,"term":"GO:0008540"}],"molecular_function":[{"annotations":[61568],"is_not":false,"summary":null,"term":"GO:0005524"},{"annotations":[61569],"is_not":false,"summary":null,"term":"GO:0016887"},{"annotations":[73989],"is_not":false,"summary":null,"term":"GO:0036402"}]},"dbxrefs":["InterPro:IPR003959","InterPro:IPR005937","UniProtKB/TrEMBL:B6K6X7","EnsemblGenomes-Gn:SJAG_04477","EnsemblGenomes-Tr:EEB09281","InterPro:IPR003960","InterPro:IPR003593","GOA:B6K6X7","InterPro:IPR027417","InterPro:IPR032501","InterPro:IPR035256"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"qrs1","uniquename":"SJAG_04482"},{"name":"srm1","uniquename":"SJAG_04481"},{"name":"dbp5","uniquename":"SJAG_04480"},{"name":"bzz1","uniquename":"SJAG_04479"},{"name":"rpl15a","uniquename":"SJAG_04478"},{"name":"rpt3","uniquename":"SJAG_04477"},{"name":"rps20","uniquename":"SJAG_04476"},{"name":"rps2","uniquename":"SJAG_04475"},{"name":"ret3","uniquename":"SJAG_04474"},{"uniquename":"SJAG_04473"},{"name":"sac3","uniquename":"SJAG_04472"}],"genes_by_uniquename":{"HGNC:9551":null,"SJAG_04477":null,"SPCC576.10c":null,"YDR394W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"ATPase family associated with various cellular activities (AAA)","id":"PF00004","interpro_description":"ATPase, AAA-type, core","interpro_id":"IPR003959","interpro_name":"ATPase_AAA_core","locations":[{"end":303,"start":171}],"match_end":303,"match_start":171,"name":"AAA"},{"dbname":"PFAM","description":"Proteasomal ATPase OB C-terminal domain","id":"PF16450","interpro_description":"Proteasomal ATPase, second OB domain","interpro_id":"IPR032501","interpro_name":"Prot_ATP_ID_OB_2nd","locations":[{"end":113,"start":58}],"match_end":113,"match_start":58,"name":"Prot_ATP_ID_OB_C"},{"dbname":"CDD","description":"RecA-like_PAN_like","id":"cd19502","locations":[{"end":302,"start":132}],"match_end":302,"match_start":132,"name":"RecA-like_PAN_like"},{"dbname":"PROSITE_PATTERNS","description":"AAA-protein family signature.","id":"PS00674","interpro_description":"ATPase, AAA-type, conserved site","interpro_id":"IPR003960","interpro_name":"ATPase_AAA_CS","locations":[{"end":292,"start":274}],"match_end":292,"match_start":274,"name":"AAA"},{"dbname":"SMART","id":"SM00382","interpro_description":"AAA+ ATPase domain","interpro_id":"IPR003593","interpro_name":"AAA+_ATPase","locations":[{"end":306,"start":167}],"match_end":306,"match_start":167,"name":"AAA_5"},{"dbname":"FUNFAM","description":"26S protease regulatory subunit 6B","id":"G3DSA:2.40.50.140:FF:000046","locations":[{"end":123,"start":13}],"match_end":123,"match_start":13},{"dbname":"FUNFAM","description":"26S protease regulatory subunit 6B","id":"G3DSA:3.40.50.300:FF:000033","locations":[{"end":304,"start":124}],"match_end":304,"match_start":124},{"dbname":"SUPERFAMILY","id":"SSF52540","interpro_description":"P-loop containing nucleoside triphosphate hydrolase","interpro_id":"IPR027417","interpro_name":"P-loop_NTPase","locations":[{"end":376,"start":129}],"match_end":376,"match_start":129,"name":"P-loop containing nucleoside triphosphate hydrolases"},{"dbname":"GENE3D","id":"G3DSA:2.40.50.140","interpro_description":"Nucleic acid-binding, OB-fold","interpro_id":"IPR012340","interpro_name":"NA-bd_OB-fold","locations":[{"end":123,"start":15}],"match_end":123,"match_start":15},{"dbname":"GENE3D","id":"G3DSA:1.10.8.60","locations":[{"end":389,"start":309}],"match_end":389,"match_start":309},{"dbname":"GENE3D","id":"G3DSA:3.40.50.300","interpro_description":"P-loop containing nucleoside triphosphate hydrolase","interpro_id":"IPR027417","interpro_name":"P-loop_NTPase","locations":[{"end":304,"start":124}],"match_end":304,"match_start":124},{"dbname":"PANTHER","id":"PTHR23073","interpro_description":"26S Proteasome Regulatory ATPase","interpro_id":"IPR050221","interpro_name":"26S_Proteasome_ATPase","locations":[{"end":378,"start":13}],"match_end":378,"match_start":13,"name":"26S PROTEASOME REGULATORY SUBUNIT"},{"dbname":"COILS","id":"Coil","locations":[{"end":54,"start":20}],"match_end":54,"match_start":20,"name":"Coil"}],"location":{"chromosome_name":"supercont5.3","end_pos":794102,"start_pos":792933,"strand":"forward"},"name":"rpt3","ortholog_annotations":[{"gene_uniquename":"SJAG_04477","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:9551","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04477","ortholog_taxonid":4896,"ortholog_uniquename":"SPCC576.10c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04477","ortholog_taxonid":4932,"ortholog_uniquename":"YDR394W","reference_uniquename":"PMID:29761456"}],"product":"19S proteasome base subcomplex ATPase subunit Rpt3","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0005524"],"not-binding":["GO:0016887","GO:0036402"]}},"subset_termids":["GO:0016853","GO:0030163","GO:0005829","GO:0034399","GO:0005694","GO:0016887","GO:0005634"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000785":null,"GO:0005524":null,"GO:0005829":null,"GO:0008540":null,"GO:0016887":null,"GO:0034399":null,"GO:0036402":null,"GO:0043161":null,"GO:1901800":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04477.1"],"transcripts_by_uniquename":{"SJAG_04477.1":null},"uniprot_identifier":"B6K6X7","uniquename":"SJAG_04477"}


id: SJAG_04478
data:
  {"cv_annotations":{"biological_process":[{"annotations":[117737],"is_not":false,"summary":null,"term":"GO:0002181"}],"cellular_component":[{"annotations":[117729],"is_not":false,"summary":null,"term":"GO:0022625"},{"annotations":[117731],"is_not":false,"summary":null,"term":"GO:0005730"},{"annotations":[117735],"is_not":false,"summary":null,"term":"GO:0030684"}],"molecular_function":[{"annotations":[117739],"is_not":false,"summary":null,"term":"GO:0003723"},{"annotations":[117741],"is_not":false,"summary":null,"term":"GO:0003735"}],"mondo":[{"annotations":[86169],"is_not":false,"summary":null,"term":"MONDO:0014245"}]},"dbxrefs":["InterPro:IPR020925","UniProtKB/TrEMBL:B6K5E4","EnsemblGenomes-Gn:SJAG_04478","InterPro:IPR012678","InterPro:IPR024794","EnsemblGenomes-Tr:EEB09282","GOA:B6K5E4","InterPro:IPR000439"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":187,"start":168}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"gas4","uniquename":"SJAG_04483"},{"name":"qrs1","uniquename":"SJAG_04482"},{"name":"srm1","uniquename":"SJAG_04481"},{"name":"dbp5","uniquename":"SJAG_04480"},{"name":"bzz1","uniquename":"SJAG_04479"},{"name":"rpl15a","uniquename":"SJAG_04478"},{"name":"rpt3","uniquename":"SJAG_04477"},{"name":"rps20","uniquename":"SJAG_04476"},{"name":"rps2","uniquename":"SJAG_04475"},{"name":"ret3","uniquename":"SJAG_04474"},{"uniquename":"SJAG_04473"}],"genes_by_uniquename":{"HGNC:10306":null,"SJAG_04478":null,"SPAC1783.08c":null,"SPCC576.11":null,"YLR029C":null,"YMR121C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Ribosomal L15","id":"PF00827","interpro_description":"Large ribosomal subunit protein eL15","interpro_id":"IPR000439","interpro_name":"Ribosomal_eL15","locations":[{"end":184,"start":2}],"match_end":184,"match_start":2,"name":"Ribosomal_L15e"},{"dbname":"PROSITE_PATTERNS","description":"Ribosomal protein L15e signature.","id":"PS01194","interpro_description":"Large ribosomal subunit protein eL15, conserved site","interpro_id":"IPR020925","interpro_name":"Ribosomal_eL15_CS","locations":[{"end":69,"start":46}],"match_end":69,"match_start":46,"name":"RIBOSOMAL_L15E"},{"dbname":"SMART","id":"SM01384","interpro_description":"Large ribosomal subunit protein eL15","interpro_id":"IPR000439","interpro_name":"Ribosomal_eL15","locations":[{"end":191,"start":2}],"match_end":191,"match_start":2,"name":"Ribosomal_L15e_2"},{"dbname":"FUNFAM","description":"Ribosomal protein L15","id":"G3DSA:3.40.1120.10:FF:000001","locations":[{"end":201,"start":1}],"match_end":201,"match_start":1},{"dbname":"SUPERFAMILY","id":"SSF54189","interpro_description":"Ribosomal protein uL23/eL15/eS24 core domain superfamily","interpro_id":"IPR012678","interpro_name":"Ribosomal_uL23/eL15/eS24_sf","locations":[{"end":186,"start":1}],"match_end":186,"match_start":1,"name":"Ribosomal proteins S24e, L23 and L15e"},{"dbname":"GENE3D","id":"G3DSA:3.40.1120.10","interpro_description":"Large ribosomal subunit protein eL15 core domain superfamily","interpro_id":"IPR024794","interpro_name":"Rbsml_eL15_core_dom_sf","locations":[{"end":201,"start":1}],"match_end":201,"match_start":1,"name":"Ribosomal protein l15e"},{"dbname":"PANTHER","id":"PTHR11847","interpro_description":"Large ribosomal subunit protein eL15","interpro_id":"IPR000439","interpro_name":"Ribosomal_eL15","locations":[{"end":201,"start":1}],"match_end":201,"match_start":1,"name":"RIBOSOMAL PROTEIN L15"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":187,"start":168}],"match_end":187,"match_start":168,"name":"disorder_prediction"},{"dbname":"MOBIDB-Positive-Polyelectrolyte","description":"consensus disorder prediction","id":"mobidb-lite-Positive-Polyelectrolyte","locations":[{"end":187,"start":169}],"match_end":187,"match_start":169,"name":"disorder_prediction"},{"dbname":"NCBIFAM","description":"50S ribosomal protein L15e","id":"NF003269","locations":[{"end":183,"start":2}],"match_end":183,"match_start":2,"name":"PRK04243.1"}],"location":{"chromosome_name":"supercont5.3","end_pos":792675,"start_pos":792070,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":77,"start":57}},{"range":{"end":179,"start":165}}],"name":"rpl15a","ortholog_annotations":[{"gene_uniquename":"SJAG_04478","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:10306","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04478","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:10306","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04478","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC1783.08c","reference_uniquename":"PMID:26896847"},{"gene_uniquename":"SJAG_04478","ortholog_taxonid":4896,"ortholog_uniquename":"SPCC576.11","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04478","ortholog_taxonid":4932,"ortholog_uniquename":"YLR029C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04478","ortholog_taxonid":4932,"ortholog_uniquename":"YLR029C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04478","ortholog_taxonid":4932,"ortholog_uniquename":"YMR121C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04478","ortholog_taxonid":4932,"ortholog_uniquename":"YMR121C","reference_uniquename":"PMID:29761456"}],"product":"60S ribosomal protein L15","references_by_uniquename":{"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0003723"],"not-binding":["GO:0003735"]}},"subset_termids":["GO:0005634","MONDO:0002280","MONDO:0005570","GO:0022626","GO:0030684","GO:0005730","GO:0005829","GO:0005198","GO:0002181"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0002181":null,"GO:0003723":null,"GO:0003735":null,"GO:0005730":null,"GO:0022625":null,"GO:0030684":null,"MONDO:0014245":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04478.1"],"transcripts_by_uniquename":{"SJAG_04478.1":null},"uniprot_identifier":"B6K5E4","uniquename":"SJAG_04478"}


id: SJAG_04479
data:
  {"coiled_coil_coords":[{"range":{"end":381,"start":361}}],"cv_annotations":{"biological_process":[{"annotations":[103053],"is_not":false,"summary":null,"term":"GO:0034314"},{"annotations":[103054],"is_not":false,"summary":null,"term":"GO:0072583"},{"annotations":[79783],"is_not":false,"summary":null,"term":"GO:0030833"}],"cellular_component":[{"annotations":[103050],"is_not":false,"summary":null,"term":"GO:0030479"},{"annotations":[103051],"is_not":false,"summary":null,"term":"GO:0032153"},{"annotations":[103052],"is_not":false,"summary":null,"term":"GO:0051286"}],"molecular_function":[{"annotations":[103056],"is_not":false,"summary":null,"term":"GO:0106006"},{"annotations":[103057],"is_not":false,"summary":null,"term":"GO:0019992"},{"annotations":[103058],"is_not":false,"summary":null,"term":"GO:0008270"}]},"dbxrefs":["EnsemblGenomes-Tr:EEB09283","InterPro:IPR020454","InterPro:IPR036028","InterPro:IPR002219","GOA:B6K6X9","UniProtKB/TrEMBL:B6K6X9","InterPro:IPR001452","InterPro:IPR001060","InterPro:IPR035459","InterPro:IPR027267","EnsemblGenomes-Gn:SJAG_04479","InterPro:IPR031160"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":494,"start":471}},{"range":{"end":534,"start":508}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"rpn1301","uniquename":"SJAG_04484"},{"name":"gas4","uniquename":"SJAG_04483"},{"name":"qrs1","uniquename":"SJAG_04482"},{"name":"srm1","uniquename":"SJAG_04481"},{"name":"dbp5","uniquename":"SJAG_04480"},{"name":"bzz1","uniquename":"SJAG_04479"},{"name":"rpl15a","uniquename":"SJAG_04478"},{"name":"rpt3","uniquename":"SJAG_04477"},{"name":"rps20","uniquename":"SJAG_04476"},{"name":"rps2","uniquename":"SJAG_04475"},{"name":"ret3","uniquename":"SJAG_04474"}],"genes_by_uniquename":{"HGNC:12304":null,"HGNC:17069":null,"HGNC:20851":null,"SJAG_04479":null,"SPBC12C2.05c":null,"YHR114W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Variant SH3 domain","id":"PF14604","interpro_description":"SH3 domain","interpro_id":"IPR001452","interpro_name":"SH3_domain","locations":[{"end":656,"start":607}],"match_end":656,"match_start":607,"name":"SH3_9"},{"dbname":"PFAM","description":"Phorbol esters/diacylglycerol binding domain (C1 domain)","id":"PF00130","interpro_description":"Protein kinase C-like, phorbol ester/diacylglycerol-binding domain","interpro_id":"IPR002219","interpro_name":"PE/DAG-bd","locations":[{"end":450,"start":399}],"match_end":450,"match_start":399,"name":"C1_1"},{"dbname":"PFAM","description":"Fes/CIP4, and EFC/F-BAR homology domain","id":"PF00611","interpro_description":"FCH domain","interpro_id":"IPR001060","interpro_name":"FCH_dom","locations":[{"end":101,"start":16}],"match_end":101,"match_start":16,"name":"FCH"},{"dbname":"PFAM","description":"SH3 domain","id":"PF00018","interpro_description":"SH3 domain","interpro_id":"IPR001452","interpro_name":"SH3_domain","locations":[{"end":587,"start":542}],"match_end":587,"match_start":542,"name":"SH3_1"},{"dbname":"CDD","description":"SH3_Bzz1_1","id":"cd11912","interpro_description":"Bzz1, SH3 domain 1","interpro_id":"IPR035459","interpro_name":"Bzz1_SH3_1","locations":[{"end":592,"start":539}],"match_end":592,"match_start":539,"name":"SH3_Bzz1_1"},{"dbname":"CDD","description":"C1_SpBZZ1-like","id":"cd20824","locations":[{"end":450,"start":398}],"match_end":450,"match_start":398,"name":"C1_SpBZZ1-like"},{"dbname":"PROSITE_PATTERNS","description":"Zinc finger phorbol-ester/DAG-type signature.","id":"PS00479","interpro_description":"Protein kinase C-like, phorbol ester/diacylglycerol-binding domain","interpro_id":"IPR002219","interpro_name":"PE/DAG-bd","locations":[{"end":448,"start":399}],"match_end":448,"match_start":399,"name":"ZF_DAG_PE_1"},{"dbname":"PROSITE_PROFILES","description":"F-BAR domain profile.","id":"PS51741","interpro_description":"F-BAR domain","interpro_id":"IPR031160","interpro_name":"F_BAR","locations":[{"end":272,"start":6}],"match_end":272,"match_start":6,"name":"F_BAR"},{"dbname":"PROSITE_PROFILES","description":"Src homology 3 (SH3) domain profile.","id":"PS50002","interpro_description":"SH3 domain","interpro_id":"IPR001452","interpro_name":"SH3_domain","locations":[{"end":595,"start":535},{"end":658,"start":600}],"match_end":658,"match_start":535,"name":"SH3"},{"dbname":"PROSITE_PROFILES","description":"Zinc finger phorbol-ester/DAG-type profile.","id":"PS50081","interpro_description":"Protein kinase C-like, phorbol ester/diacylglycerol-binding domain","interpro_id":"IPR002219","interpro_name":"PE/DAG-bd","locations":[{"end":448,"start":398}],"match_end":448,"match_start":398,"name":"ZF_DAG_PE_2"},{"dbname":"SMART","id":"SM00109","interpro_description":"Protein kinase C-like, phorbol ester/diacylglycerol-binding domain","interpro_id":"IPR002219","interpro_name":"PE/DAG-bd","locations":[{"end":448,"start":399}],"match_end":448,"match_start":399,"name":"c1_12"},{"dbname":"SMART","id":"SM00326","interpro_description":"SH3 domain","interpro_id":"IPR001452","interpro_name":"SH3_domain","locations":[{"end":594,"start":538},{"end":658,"start":603}],"match_end":658,"match_start":538,"name":"SH3_2"},{"dbname":"SMART","id":"SM00055","interpro_description":"FCH domain","interpro_id":"IPR001060","interpro_name":"FCH_dom","locations":[{"end":111,"start":4}],"match_end":111,"match_start":4,"name":"fch_2"},{"dbname":"PRINTS","description":"Diacylglycerol/phorbol-ester binding signature","id":"PR00008","interpro_description":"Diacylglycerol/phorbol-ester binding","interpro_id":"IPR020454","interpro_name":"DAG/PE-bd","locations":[{"end":410,"start":396},{"end":421,"start":412},{"end":449,"start":425}],"match_end":449,"match_start":396,"name":"DAGPEDOMAIN"},{"dbname":"PRINTS","description":"SH3 domain signature","id":"PR00452","interpro_description":"SH3 domain","interpro_id":"IPR001452","interpro_name":"SH3_domain","locations":[{"end":613,"start":603},{"end":632,"start":617},{"end":658,"start":646}],"match_end":658,"match_start":603,"name":"SH3DOMAIN"},{"dbname":"FUNFAM","description":"Unconventional Myosin IB","id":"G3DSA:2.30.30.40:FF:000072","locations":[{"end":658,"start":593}],"match_end":658,"match_start":593},{"dbname":"FUNFAM","description":"Actin polymerization protein Bzz1","id":"G3DSA:1.20.1270.60:FF:000060","locations":[{"end":297,"start":6}],"match_end":297,"match_start":6},{"dbname":"SUPERFAMILY","id":"SSF50044","interpro_description":"SH3-like domain superfamily","interpro_id":"IPR036028","interpro_name":"SH3-like_dom_sf","locations":[{"end":595,"start":524},{"end":656,"start":601}],"match_end":656,"match_start":524,"name":"SH3-domain"},{"dbname":"SUPERFAMILY","id":"SSF103657","interpro_description":"AH/BAR domain superfamily","interpro_id":"IPR027267","interpro_name":"AH/BAR_dom_sf","locations":[{"end":294,"start":7}],"match_end":294,"match_start":7,"name":"BAR/IMD domain-like"},{"dbname":"SUPERFAMILY","id":"SSF57889","interpro_description":"C1-like domain superfamily","interpro_id":"IPR046349","interpro_name":"C1-like_sf","locations":[{"end":449,"start":395}],"match_end":449,"match_start":395,"name":"Cysteine-rich domain"},{"dbname":"GENE3D","id":"G3DSA:1.20.1270.60","interpro_description":"AH/BAR domain superfamily","interpro_id":"IPR027267","interpro_name":"AH/BAR_dom_sf","locations":[{"end":296,"start":4}],"match_end":296,"match_start":4,"name":"Arfaptin homology (AH) domain/BAR domain"},{"dbname":"GENE3D","id":"G3DSA:2.30.30.40","locations":[{"end":658,"start":531}],"match_end":658,"match_start":531,"name":"SH3 Domains"},{"dbname":"GENE3D","id":"G3DSA:3.30.60.20","locations":[{"end":462,"start":391}],"match_end":462,"match_start":391},{"dbname":"PANTHER","id":"PTHR15735","locations":[{"end":657,"start":14}],"match_end":657,"match_start":14,"name":"FCH AND DOUBLE SH3 DOMAINS PROTEIN"},{"dbname":"COILS","id":"Coil","locations":[{"end":381,"start":361}],"match_end":381,"match_start":361,"name":"Coil"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":494,"start":471},{"end":534,"start":508}],"match_end":534,"match_start":471,"name":"disorder_prediction"},{"dbname":"MOBIDB-Low-complexity","description":"consensus disorder prediction","id":"mobidb-lite-Low-complexity","locations":[{"end":534,"start":521}],"match_end":534,"match_start":521,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polar","description":"consensus disorder prediction","id":"mobidb-lite-Polar","locations":[{"end":482,"start":471},{"end":517,"start":508}],"match_end":517,"match_start":471,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.3","end_pos":790620,"start_pos":788273,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":534,"start":520}}],"name":"bzz1","ortholog_annotations":[{"gene_uniquename":"SJAG_04479","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:12304","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04479","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:17069","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04479","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:20851","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04479","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC12C2.05c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04479","ortholog_taxonid":4932,"ortholog_uniquename":"YHR114W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04479","ortholog_taxonid":4932,"ortholog_uniquename":"YHR114W","reference_uniquename":"PMID:26896847"}],"product":"F-BAR domain protein Bzz1","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0008270","GO:0019992"],"not-binding":["GO:0106006"]}},"subset_termids":["GO:0008289","GO:0060090","GO:0015629","GO:0030479","GO:0030036","GO:0005938","GO:0016192","GO:0065003"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0008270":null,"GO:0019992":null,"GO:0030479":null,"GO:0030833":null,"GO:0032153":null,"GO:0034314":null,"GO:0051286":null,"GO:0072583":null,"GO:0106006":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04479.1"],"transcripts_by_uniquename":{"SJAG_04479.1":null},"uniprot_identifier":"B6K6X9","uniquename":"SJAG_04479"}


id: SJAG_04480
data:
  {"cv_annotations":{"biological_process":[{"annotations":[74308],"is_not":false,"summary":null,"term":"GO:0016973"}],"cellular_component":[{"annotations":[74312],"is_not":false,"summary":null,"term":"GO:0010494"},{"annotations":[103060],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[103061],"is_not":false,"summary":null,"term":"GO:0005635"}],"molecular_function":[{"annotations":[61959],"is_not":false,"summary":null,"term":"GO:0005524"},{"annotations":[74311],"is_not":false,"summary":null,"term":"GO:0003729"},{"annotations":[74310],"is_not":false,"summary":null,"term":"GO:0003724"}]},"dbxrefs":["UniProtKB/TrEMBL:B6K6Y0","GOA:B6K6Y0","InterPro:IPR027417","EnsemblGenomes-Gn:SJAG_04480","EnsemblGenomes-Tr:EEB09284","InterPro:IPR001650","InterPro:IPR011545","InterPro:IPR000629","InterPro:IPR014014","InterPro:IPR014001"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":86,"start":1}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"cdr1","uniquename":"SJAG_04486"},{"name":"rpn1301","uniquename":"SJAG_04484"},{"name":"gas4","uniquename":"SJAG_04483"},{"name":"qrs1","uniquename":"SJAG_04482"},{"name":"srm1","uniquename":"SJAG_04481"},{"name":"dbp5","uniquename":"SJAG_04480"},{"name":"bzz1","uniquename":"SJAG_04479"},{"name":"rpl15a","uniquename":"SJAG_04478"},{"name":"rpt3","uniquename":"SJAG_04477"},{"name":"rps20","uniquename":"SJAG_04476"},{"name":"rps2","uniquename":"SJAG_04475"}],"genes_by_uniquename":{"HGNC:18698":null,"HGNC:25628":null,"HGNC:2742":null,"SJAG_04480":null,"SPBC12C2.06":null,"YOR046C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Helicase conserved C-terminal domain","id":"PF00271","interpro_description":"Helicase, C-terminal domain-like","interpro_id":"IPR001650","interpro_name":"Helicase_C-like","locations":[{"end":446,"start":332}],"match_end":446,"match_start":332,"name":"Helicase_C"},{"dbname":"PFAM","description":"DEAD/DEAH box helicase","id":"PF00270","interpro_description":"DEAD/DEAH box helicase domain","interpro_id":"IPR011545","interpro_name":"DEAD/DEAH_box_helicase_dom","locations":[{"end":294,"start":132}],"match_end":294,"match_start":132,"name":"DEAD"},{"dbname":"CDD","description":"DEADc_DDX19_DDX25","id":"cd17963","locations":[{"end":308,"start":114}],"match_end":308,"match_start":114,"name":"DEADc_DDX19_DDX25"},{"dbname":"CDD","description":"SF2_C_DEAD","id":"cd18787","locations":[{"end":455,"start":319}],"match_end":455,"match_start":319,"name":"SF2_C_DEAD"},{"dbname":"PROSITE_PATTERNS","description":"DEAD-box subfamily ATP-dependent helicases signature.","id":"PS00039","interpro_description":"ATP-dependent RNA helicase DEAD-box, conserved site","interpro_id":"IPR000629","interpro_name":"RNA-helicase_DEAD-box_CS","locations":[{"end":260,"start":252}],"match_end":260,"match_start":252,"name":"DEAD_ATP_HELICASE"},{"dbname":"PROSITE_PROFILES","description":"Superfamilies 1 and 2 helicase C-terminal domain profile.","id":"PS51194","interpro_description":"Helicase, C-terminal domain-like","interpro_id":"IPR001650","interpro_name":"Helicase_C-like","locations":[{"end":491,"start":318}],"match_end":491,"match_start":318,"name":"HELICASE_CTER"},{"dbname":"PROSITE_PROFILES","description":"Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.","id":"PS51192","interpro_description":"Helicase superfamily 1/2, ATP-binding domain","interpro_id":"IPR014001","interpro_name":"Helicase_ATP-bd","locations":[{"end":307,"start":140}],"match_end":307,"match_start":140,"name":"HELICASE_ATP_BIND_1"},{"dbname":"PROSITE_PROFILES","description":"DEAD-box RNA helicase Q motif profile.","id":"PS51195","interpro_description":"RNA helicase, DEAD-box type, Q motif","interpro_id":"IPR014014","interpro_name":"RNA_helicase_DEAD_Q_motif","locations":[{"end":135,"start":107}],"match_end":135,"match_start":107,"name":"Q_MOTIF"},{"dbname":"SMART","id":"SM00487","interpro_description":"Helicase superfamily 1/2, ATP-binding domain","interpro_id":"IPR014001","interpro_name":"Helicase_ATP-bd","locations":[{"end":322,"start":126}],"match_end":322,"match_start":126,"name":"ultradead3"},{"dbname":"SMART","id":"SM00490","interpro_description":"Helicase, C-terminal domain-like","interpro_id":"IPR001650","interpro_name":"Helicase_C-like","locations":[{"end":446,"start":359}],"match_end":446,"match_start":359,"name":"helicmild6"},{"dbname":"FUNFAM","description":"ATP-dependent RNA helicase DBP5","id":"G3DSA:3.40.50.300:FF:000849","locations":[{"end":312,"start":85}],"match_end":312,"match_start":85},{"dbname":"FUNFAM","description":"ATP-dependent RNA helicase DDX19B","id":"G3DSA:3.40.50.300:FF:000318","locations":[{"end":491,"start":316}],"match_end":491,"match_start":316},{"dbname":"SUPERFAMILY","id":"SSF52540","interpro_description":"P-loop containing nucleoside triphosphate hydrolase","interpro_id":"IPR027417","interpro_name":"P-loop_NTPase","locations":[{"end":457,"start":177}],"match_end":457,"match_start":177,"name":"P-loop containing nucleoside triphosphate hydrolases"},{"dbname":"GENE3D","id":"G3DSA:3.40.50.300","interpro_description":"P-loop containing nucleoside triphosphate hydrolase","interpro_id":"IPR027417","interpro_name":"P-loop_NTPase","locations":[{"end":314,"start":82},{"end":491,"start":316}],"match_end":491,"match_start":82},{"dbname":"PANTHER","id":"PTHR47958","locations":[{"end":463,"start":65}],"match_end":463,"match_start":65,"name":"ATP-DEPENDENT RNA HELICASE DBP3"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":86,"start":1}],"match_end":86,"match_start":1,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polyampholyte","description":"consensus disorder prediction","id":"mobidb-lite-Polyampholyte","locations":[{"end":12,"start":1},{"end":45,"start":19},{"end":78,"start":53}],"match_end":78,"match_start":1,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.3","end_pos":788122,"start_pos":786511,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":75,"start":52}}],"name":"dbp5","ortholog_annotations":[{"gene_uniquename":"SJAG_04480","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:18698","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04480","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:25628","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04480","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:2742","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04480","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC12C2.06","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04480","ortholog_taxonid":4932,"ortholog_uniquename":"YOR046C","reference_uniquename":"PMID:29761456"}],"product":"cytoplasmic ATP-dependent RNA helicase Dbp5","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0005524","GO:0003729"],"not-binding":["GO:0003724"]}},"subset_termids":["GO:0006913","GO:0010494","GO:0005829","GO:0016853","GO:0005634","GO:0140098"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0003724":null,"GO:0003729":null,"GO:0005524":null,"GO:0005635":null,"GO:0005829":null,"GO:0010494":null,"GO:0016973":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04480.1"],"transcripts_by_uniquename":{"SJAG_04480.1":null},"uniprot_identifier":"B6K6Y0","uniquename":"SJAG_04480"}


id: SJAG_04481
data:
  {"active_sites":[{"assigned_by":"UniProtKB","range":{"end":170,"start":170}}],"cv_annotations":{"biological_process":[{"annotations":[75194],"is_not":false,"summary":null,"term":"GO:0008295"},{"annotations":[103069],"is_not":false,"summary":null,"term":"GO:0006597"}],"cellular_component":[{"annotations":[75193],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[103067],"is_not":false,"summary":null,"term":"GO:0005634"}],"molecular_function":[{"annotations":[75192],"is_not":false,"summary":null,"term":"GO:0004766"},{"annotations":[103071],"is_not":false,"summary":null,"term":"GO:0016768"}]},"dbxrefs":["InterPro:IPR030373","GOA:B6K6Y1","InterPro:IPR030668","EnsemblGenomes-Gn:SJAG_04481","InterPro:IPR037163","InterPro:IPR001045","InterPro:IPR030374","InterPro:IPR035246","InterPro:IPR029063","EnsemblGenomes-Tr:EEB09285","UniProtKB/TrEMBL:B6K6Y1"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"dut1","uniquename":"SJAG_04487"},{"name":"cdr1","uniquename":"SJAG_04486"},{"name":"rpn1301","uniquename":"SJAG_04484"},{"name":"gas4","uniquename":"SJAG_04483"},{"name":"qrs1","uniquename":"SJAG_04482"},{"name":"srm1","uniquename":"SJAG_04481"},{"name":"dbp5","uniquename":"SJAG_04480"},{"name":"bzz1","uniquename":"SJAG_04479"},{"name":"rpl15a","uniquename":"SJAG_04478"},{"name":"rpt3","uniquename":"SJAG_04477"},{"name":"rps20","uniquename":"SJAG_04476"}],"genes_by_uniquename":{"HGNC:11296":null,"SJAG_04481":null,"SPBC12C2.07c":null,"YLR146C":null,"YPR069C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Spermidine synthase tetramerisation domain","id":"PF17284","interpro_description":"Spermidine synthase, tetramerisation domain","interpro_id":"IPR035246","interpro_name":"Spermidine_synt_N","locations":[{"end":70,"start":16}],"match_end":70,"match_start":16,"name":"Spermine_synt_N"},{"dbname":"PFAM","description":"Spermine/spermidine synthase domain","id":"PF01564","locations":[{"end":257,"start":73}],"match_end":257,"match_start":73,"name":"Spermine_synth"},{"dbname":"CDD","description":"AdoMet_MTases","id":"cd02440","locations":[{"end":200,"start":93}],"match_end":200,"match_start":93,"name":"AdoMet_MTases"},{"dbname":"PROSITE_PATTERNS","description":"Polyamine biosynthesis (PABS) domain signature.","id":"PS01330","interpro_description":"Polyamine biosynthesis domain, conserved site","interpro_id":"IPR030373","interpro_name":"PABS_CS","locations":[{"end":107,"start":94}],"match_end":107,"match_start":94,"name":"PABS_1"},{"dbname":"PROSITE_PROFILES","description":"Polyamine biosynthesis (PABS) domain profile.","id":"PS51006","interpro_description":"Polyamine biosynthesis domain","interpro_id":"IPR030374","interpro_name":"PABS","locations":[{"end":250,"start":15}],"match_end":250,"match_start":15,"name":"PABS_2"},{"dbname":"FUNFAM","description":"Spermidine synthase","id":"G3DSA:3.40.50.150:FF:000013","locations":[{"end":296,"start":70}],"match_end":296,"match_start":70},{"dbname":"FUNFAM","description":"SPE3p Spermidine synthase","id":"G3DSA:2.30.140.10:FF:000001","locations":[{"end":70,"start":6}],"match_end":70,"match_start":6},{"dbname":"SUPERFAMILY","id":"SSF53335","interpro_description":"S-adenosyl-L-methionine-dependent methyltransferase superfamily","interpro_id":"IPR029063","interpro_name":"SAM-dependent_MTases_sf","locations":[{"end":295,"start":13}],"match_end":295,"match_start":13,"name":"S-adenosyl-L-methionine-dependent methyltransferases"},{"dbname":"GENE3D","id":"G3DSA:2.30.140.10","interpro_description":"Spermidine synthase, tetramerisation domain superfamily","interpro_id":"IPR037163","interpro_name":"Spermidine_synt_N_sf","locations":[{"end":69,"start":1}],"match_end":69,"match_start":1,"name":"Spermidine synthase, tetramerisation domain"},{"dbname":"GENE3D","id":"G3DSA:3.40.50.150","interpro_description":"S-adenosyl-L-methionine-dependent methyltransferase superfamily","interpro_id":"IPR029063","interpro_name":"SAM-dependent_MTases_sf","locations":[{"end":298,"start":70}],"match_end":298,"match_start":70,"name":"Vaccinia Virus protein VP39"},{"dbname":"PANTHER","id":"PTHR11558","interpro_description":"Spermidine/spermine synthases","interpro_id":"IPR001045","interpro_name":"Spermi_synthase","locations":[{"end":296,"start":9}],"match_end":296,"match_start":9,"name":"SPERMIDINE/SPERMINE SYNTHASE"},{"dbname":"PIRSF","id":"PIRSF000502","interpro_description":"Spermidine/spermine synthase, eukaryotes","interpro_id":"IPR030668","interpro_name":"Spermi_synthase_euk","locations":[{"end":299,"start":4}],"match_end":299,"match_start":4,"name":"Spermidine_synth"},{"dbname":"HAMAP","description":"Polyamine aminopropyltransferase [speE].","id":"MF_00198","interpro_description":"Spermidine/spermine synthases","interpro_id":"IPR001045","interpro_name":"Spermi_synthase","locations":[{"end":295,"start":16}],"match_end":295,"match_start":16,"name":"Spermidine_synth"},{"dbname":"NCBIFAM","description":"spermidine synthase","id":"TIGR00417","interpro_description":"Spermidine/spermine synthases","interpro_id":"IPR001045","interpro_name":"Spermi_synthase","locations":[{"end":289,"start":17}],"match_end":289,"match_start":17,"name":"speE"},{"dbname":"NCBIFAM","description":"polyamine aminopropyltransferase","id":"NF002010","locations":[{"end":295,"start":16}],"match_end":295,"match_start":16,"name":"PRK00811.1"}],"location":{"chromosome_name":"supercont5.3","end_pos":786222,"start_pos":785320,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":117,"start":93}}],"name":"srm1","ortholog_annotations":[{"gene_uniquename":"SJAG_04481","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:11296","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04481","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC12C2.07c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04481","ortholog_taxonid":4932,"ortholog_uniquename":"YLR146C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04481","ortholog_taxonid":4932,"ortholog_uniquename":"YLR146C","reference_uniquename":"PMID:26896847"},{"gene_uniquename":"SJAG_04481","ortholog_taxonid":4932,"ortholog_uniquename":"YPR069C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04481","ortholog_taxonid":4932,"ortholog_uniquename":"YPR069C","reference_uniquename":"PMID:26896847"}],"product":"spermidine synthase Srm1","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0016768","GO:0004766"]}},"subset_termids":["GO:0016765","GO:0005634","GO:0005829"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0004766":null,"GO:0005634":null,"GO:0005829":null,"GO:0006597":null,"GO:0008295":null,"GO:0016768":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04481.1"],"transcripts_by_uniquename":{"SJAG_04481.1":null},"uniprot_identifier":"B6K6Y1","uniquename":"SJAG_04481"}


id: SJAG_04482
data:
  {"cv_annotations":{"biological_process":[{"annotations":[109604],"is_not":false,"summary":null,"term":"GO:0002181"}],"cellular_component":[{"annotations":[80548],"is_not":false,"summary":null,"term":"GO:0005829"}],"molecular_function":[{"annotations":[69879],"is_not":false,"summary":null,"term":"GO:0005524"},{"annotations":[80547],"is_not":false,"summary":null,"term":"GO:0004819"}],"mondo":[{"annotations":[86973],"is_not":false,"summary":null,"term":"MONDO:0014335"}]},"dbxrefs":["InterPro:IPR004514","EnsemblGenomes-Gn:SJAG_04482","InterPro:IPR042559","InterPro:IPR000924","InterPro:IPR042558","InterPro:IPR014729","EnsemblGenomes-Tr:EEB09286","InterPro:IPR007638","InterPro:IPR007639","InterPro:IPR020058","GOA:B6K6Y2","InterPro:IPR020056","InterPro:IPR011035","InterPro:IPR001412","UniProtKB/TrEMBL:B6K6Y2","InterPro:IPR020059"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"pct1","uniquename":"SJAG_04488"},{"name":"dut1","uniquename":"SJAG_04487"},{"name":"cdr1","uniquename":"SJAG_04486"},{"name":"rpn1301","uniquename":"SJAG_04484"},{"name":"gas4","uniquename":"SJAG_04483"},{"name":"qrs1","uniquename":"SJAG_04482"},{"name":"srm1","uniquename":"SJAG_04481"},{"name":"dbp5","uniquename":"SJAG_04480"},{"name":"bzz1","uniquename":"SJAG_04479"},{"name":"rpl15a","uniquename":"SJAG_04478"},{"name":"rpt3","uniquename":"SJAG_04477"}],"genes_by_uniquename":{"HGNC:9751":null,"SJAG_04482":null,"SPBC342.02":null,"YOR168W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"tRNA synthetases class I (E and Q), anti-codon binding domain","id":"PF20974","interpro_description":"tRNA synthetases class I (E and Q), anti-codon binding domain","interpro_id":"IPR049437","interpro_name":"tRNA-synt_1c_C2","locations":[{"end":738,"start":675}],"match_end":738,"match_start":675,"name":"tRNA-synt_1c_C2"},{"dbname":"PFAM","description":"Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2","id":"PF04557","interpro_description":"Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2","interpro_id":"IPR007638","interpro_name":"Gln-tRNA-synth_Ib_RNA-bd_2","locations":[{"end":243,"start":171}],"match_end":243,"match_start":171,"name":"tRNA_synt_1c_R2"},{"dbname":"PFAM","description":"tRNA synthetases class I (E and Q), anti-codon binding domain","id":"PF03950","interpro_description":"Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain","interpro_id":"IPR020059","interpro_name":"Glu/Gln-tRNA-synth_Ib_codon-bd","locations":[{"end":663,"start":563}],"match_end":663,"match_start":563,"name":"tRNA-synt_1c_C"},{"dbname":"PFAM","description":"tRNA synthetases class I (E and Q), catalytic domain","id":"PF00749","interpro_description":"Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain","interpro_id":"IPR020058","interpro_name":"Glu/Gln-tRNA-synth_Ib_cat-dom","locations":[{"end":559,"start":251}],"match_end":559,"match_start":251,"name":"tRNA-synt_1c"},{"dbname":"PFAM","description":"Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1","id":"PF04558","interpro_description":"Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal","interpro_id":"IPR007639","interpro_name":"Gln-tRNA-synth_Ib_RNA-bd_N","locations":[{"end":167,"start":7}],"match_end":167,"match_start":7,"name":"tRNA_synt_1c_R1"},{"dbname":"CDD","description":"GlnRS_core","id":"cd00807","locations":[{"end":564,"start":250}],"match_end":564,"match_start":250,"name":"GlnRS_core"},{"dbname":"PROSITE_PATTERNS","description":"Aminoacyl-transfer RNA synthetases class-I signature.","id":"PS00178","interpro_description":"Aminoacyl-tRNA synthetase, class I, conserved site","interpro_id":"IPR001412","interpro_name":"aa-tRNA-synth_I_CS","locations":[{"end":268,"start":257}],"match_end":268,"match_start":257,"name":"AA_TRNA_LIGASE_I"},{"dbname":"PRINTS","description":"Glutamyl-tRNA synthetase signature","id":"PR00987","interpro_description":"Glutamyl/glutaminyl-tRNA synthetase","interpro_id":"IPR000924","interpro_name":"Glu/Gln-tRNA-synth","locations":[{"end":266,"start":254},{"end":279,"start":268},{"end":296,"start":283},{"end":443,"start":433}],"match_end":443,"match_start":254,"name":"TRNASYNTHGLU"},{"dbname":"FUNFAM","description":"Glutaminyl-tRNA synthetase","id":"G3DSA:3.40.50.620:FF:000183","locations":[{"end":565,"start":214}],"match_end":565,"match_start":214},{"dbname":"FUNFAM","description":"Glutamine--tRNA ligase cytoplasmic","id":"G3DSA:1.10.10.2420:FF:000001","locations":[{"end":191,"start":122}],"match_end":191,"match_start":122},{"dbname":"FUNFAM","description":"Glutamine--tRNA ligase cytoplasmic","id":"G3DSA:1.10.8.1290:FF:000002","locations":[{"end":120,"start":4}],"match_end":120,"match_start":4},{"dbname":"FUNFAM","description":"Glutamine--tRNA ligase","id":"G3DSA:1.10.1160.10:FF:000001","locations":[{"end":560,"start":483}],"match_end":560,"match_start":483},{"dbname":"FUNFAM","description":"Glutamine--tRNA ligase","id":"G3DSA:2.40.240.10:FF:000007","locations":[{"end":684,"start":566}],"match_end":684,"match_start":566},{"dbname":"FUNFAM","description":"Glutamine--tRNA ligase","id":"G3DSA:3.90.800.10:FF:000001","locations":[{"end":432,"start":323}],"match_end":432,"match_start":323},{"dbname":"SUPERFAMILY","id":"SSF50715","interpro_description":"Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamily","interpro_id":"IPR011035","interpro_name":"Ribosomal_bL25/Gln-tRNA_synth","locations":[{"end":773,"start":562}],"match_end":773,"match_start":562,"name":"Ribosomal protein L25-like"},{"dbname":"SUPERFAMILY","id":"SSF52374","locations":[{"end":566,"start":251}],"match_end":566,"match_start":251,"name":"Nucleotidylyl transferase"},{"dbname":"GENE3D","id":"G3DSA:2.40.240.10","interpro_description":"Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminal","interpro_id":"IPR020056","interpro_name":"Rbsml_bL25/Gln-tRNA_synth_N","locations":[{"end":776,"start":566}],"match_end":776,"match_start":566,"name":"Ribosomal Protein L25; Chain P"},{"dbname":"GENE3D","id":"G3DSA:1.10.10.2420","interpro_description":"Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal, subdomain 2","interpro_id":"IPR042559","interpro_name":"Gln-tRNA-synth_Ib_RNA-bd_N_2","locations":[{"end":192,"start":122}],"match_end":192,"match_start":122},{"dbname":"GENE3D","id":"G3DSA:1.10.8.1290","interpro_description":"Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal, subdomain 1","interpro_id":"IPR042558","interpro_name":"Gln-tRNA-synth_Ib_RNA-bd_N_1","locations":[{"end":120,"start":2}],"match_end":120,"match_start":2},{"dbname":"GENE3D","id":"G3DSA:3.40.50.620","interpro_description":"Rossmann-like alpha/beta/alpha sandwich fold","interpro_id":"IPR014729","interpro_name":"Rossmann-like_a/b/a_fold","locations":[{"end":565,"start":214}],"match_end":565,"match_start":214,"name":"HUPs"},{"dbname":"PANTHER","id":"PTHR43097","interpro_description":"Glutamine/Glutamate--tRNA Ligase","interpro_id":"IPR050132","interpro_name":"Gln/Glu-tRNA_Ligase","locations":[{"end":771,"start":16}],"match_end":771,"match_start":16,"name":"GLUTAMINE-TRNA LIGASE"},{"dbname":"NCBIFAM","description":"glutamine--tRNA ligase","id":"TIGR00440","interpro_description":"Glutamine-tRNA synthetase","interpro_id":"IPR004514","interpro_name":"Gln-tRNA-synth","locations":[{"end":772,"start":251}],"match_end":772,"match_start":251,"name":"glnS"}],"location":{"chromosome_name":"supercont5.3","end_pos":784959,"start_pos":782608,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":209,"start":193}}],"name":"qrs1","ortholog_annotations":[{"gene_uniquename":"SJAG_04482","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:9751","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04482","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC342.02","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04482","ortholog_taxonid":4932,"ortholog_uniquename":"YOR168W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04482","ortholog_taxonid":4932,"ortholog_uniquename":"YOR168W","reference_uniquename":"PMID:26896847"}],"product":"mitochondrial and cytoplasmic glutaminyl-tRNA ligase Qrs1","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0005524"],"not-binding":["GO:0004819"]}},"subset_termids":["MONDO:0005559","GO:0140101","GO:0002181","GO:0140098","GO:0016874","GO:0005829"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0002181":null,"GO:0004819":null,"GO:0005524":null,"GO:0005829":null,"MONDO:0014335":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04482.1"],"transcripts_by_uniquename":{"SJAG_04482.1":null},"uniprot_identifier":"B6K6Y2","uniquename":"SJAG_04482"}


id: SJAG_04483
data:
  {"chains":[{"assigned_by":"UniProtKB","range":{"end":459,"start":21}}],"cv_annotations":{"biological_process":[{"annotations":[73430],"is_not":false,"summary":null,"term":"GO:0034412"},{"annotations":[73431],"is_not":false,"summary":null,"term":"GO:0031321"},{"annotations":[73432],"is_not":false,"summary":null,"term":"GO:0071970"}],"cellular_component":[{"annotations":[109607],"is_not":false,"summary":null,"term":"GO:0005628"},{"annotations":[60888],"is_not":false,"summary":null,"term":"GO:0098552"}],"molecular_function":[{"annotations":[73429],"is_not":false,"summary":null,"term":"GO:0042124"}],"sequence":[{"annotations":[80933],"is_not":false,"summary":null,"term":"SO:0000418"}]},"dbxrefs":["InterPro:IPR004886","EnsemblGenomes-Gn:SJAG_04483","InterPro:IPR017853","EnsemblGenomes-Tr:EEB09287","GOA:B6K6Y3","UniProtKB/TrEMBL:B6K6Y3"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"did4","uniquename":"SJAG_04489"},{"name":"pct1","uniquename":"SJAG_04488"},{"name":"dut1","uniquename":"SJAG_04487"},{"name":"cdr1","uniquename":"SJAG_04486"},{"name":"rpn1301","uniquename":"SJAG_04484"},{"name":"gas4","uniquename":"SJAG_04483"},{"name":"qrs1","uniquename":"SJAG_04482"},{"name":"srm1","uniquename":"SJAG_04481"},{"name":"dbp5","uniquename":"SJAG_04480"},{"name":"bzz1","uniquename":"SJAG_04479"},{"name":"rpl15a","uniquename":"SJAG_04478"}],"genes_by_uniquename":{"SJAG_04483":null,"SPBC342.03":null,"YOL030W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Glucanosyltransferase","id":"PF03198","interpro_description":"Glucanosyltransferase","interpro_id":"IPR004886","interpro_name":"Glucanosyltransferase","locations":[{"end":328,"start":17}],"match_end":328,"match_start":17,"name":"Glyco_hydro_72"},{"dbname":"SUPERFAMILY","id":"SSF51445","interpro_description":"Glycoside hydrolase superfamily","interpro_id":"IPR017853","interpro_name":"Glycoside_hydrolase_SF","locations":[{"end":320,"start":45}],"match_end":320,"match_start":45,"name":"(Trans)glycosidases"},{"dbname":"GENE3D","id":"G3DSA:3.20.20.80","locations":[{"end":333,"start":17}],"match_end":333,"match_start":17,"name":"Glycosidases"},{"dbname":"PANTHER","id":"PTHR31468","interpro_description":"Glucanosyltransferase","interpro_id":"IPR004886","interpro_name":"Glucanosyltransferase","locations":[{"end":431,"start":5}],"match_end":431,"match_start":5,"name":"1,3-BETA-GLUCANOSYLTRANSFERASE GAS1"}],"location":{"chromosome_name":"supercont5.3","end_pos":782181,"start_pos":780802,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":433,"start":414}},{"range":{"end":457,"start":441}}],"name":"gas4","ortholog_annotations":[{"gene_uniquename":"SJAG_04483","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC342.03","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04483","ortholog_taxonid":4932,"ortholog_uniquename":"YOL030W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04483","ortholog_taxonid":4932,"ortholog_uniquename":"YOL030W","reference_uniquename":"PMID:26896847"}],"product":"spore wall 1,3-beta-glucanosyltransferase Gas4","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000043":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null,"PMID:36408920":null},"signal_peptide":{"assigned_by":"UniProtKB","evidence":"ECO:0000256","feature_type":"signal peptide","range":{"end":20,"start":1},"reference":null,"termid":"SO:0000418"},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0042124"]}},"subset_termids":["GO:0030437","GO:0071554","GO:0042124","GO:0005628","GO:0005975"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005628":null,"GO:0031321":null,"GO:0034412":null,"GO:0042124":null,"GO:0071970":null,"GO:0098552":null,"SO:0000418":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04483.1"],"transcripts_by_uniquename":{"SJAG_04483.1":null},"uniprot_identifier":"B6K6Y3","uniquename":"SJAG_04483"}


id: SJAG_04484
data:
  {"cv_annotations":{"biological_process":[{"annotations":[109616],"is_not":false,"summary":null,"term":"GO:0043161"}],"cellular_component":[{"annotations":[109613],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[62293],"is_not":false,"summary":null,"term":"GO:0005634"},{"annotations":[74591],"is_not":false,"summary":null,"term":"GO:0008541"}],"molecular_function":[{"annotations":[74592],"is_not":false,"summary":null,"term":"GO:0061133"},{"annotations":[74593],"is_not":false,"summary":null,"term":"GO:0070628"}]},"dbxrefs":["InterPro:IPR038108","EnsemblGenomes-Tr:EEB09288","InterPro:IPR006773","InterPro:IPR038633","UniProtKB/TrEMBL:B6K6Y4","InterPro:IPR032368","EnsemblGenomes-Gn:SJAG_04484","GOA:B6K6Y4"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":169,"start":144}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"mrpl40","uniquename":"SJAG_04490"},{"name":"did4","uniquename":"SJAG_04489"},{"name":"pct1","uniquename":"SJAG_04488"},{"name":"dut1","uniquename":"SJAG_04487"},{"name":"cdr1","uniquename":"SJAG_04486"},{"name":"rpn1301","uniquename":"SJAG_04484"},{"name":"gas4","uniquename":"SJAG_04483"},{"name":"qrs1","uniquename":"SJAG_04482"},{"name":"srm1","uniquename":"SJAG_04481"},{"name":"dbp5","uniquename":"SJAG_04480"},{"name":"bzz1","uniquename":"SJAG_04479"}],"genes_by_uniquename":{"HGNC:15759":null,"SJAG_04484":null,"SPBC342.04":null,"YLR421C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Proteasome complex subunit Rpn13, Pru domain","id":"PF04683","interpro_description":"Rpn13/ADRM1, Pru domain","interpro_id":"IPR044868","interpro_name":"Rpn13/ADRM1_Pru","locations":[{"end":102,"start":3}],"match_end":102,"match_start":3,"name":"Rpn13_ADRM1_Pru"},{"dbname":"PFAM","description":"UCH-binding domain","id":"PF16550","interpro_description":"RPN13, DEUBAD domain","interpro_id":"IPR032368","interpro_name":"RPN13_DEUBAD","locations":[{"end":279,"start":174}],"match_end":279,"match_start":174,"name":"RPN13_C"},{"dbname":"CDD","description":"PH_Rpn13","id":"cd13314","locations":[{"end":110,"start":4}],"match_end":110,"match_start":4,"name":"PH_Rpn13"},{"dbname":"PROSITE_PROFILES","description":"DEUBAD (DEUBiquitinase ADaptor) domain profile.","id":"PS51916","interpro_description":"DEUBAD domain","interpro_id":"IPR044867","interpro_name":"DEUBAD_dom","locations":[{"end":289,"start":182}],"match_end":289,"match_start":182,"name":"DEUBAD"},{"dbname":"PROSITE_PROFILES","description":"Pru (pleckstrin-like receptor for ubiquitin) domain profile.","id":"PS51917","interpro_description":"Rpn13/ADRM1, Pru domain","interpro_id":"IPR044868","interpro_name":"Rpn13/ADRM1_Pru","locations":[{"end":113,"start":1}],"match_end":113,"match_start":1,"name":"PRU"},{"dbname":"FUNFAM","description":"Proteasomal ubiquitin receptor ADRM1","id":"G3DSA:2.30.29.70:FF:000001","locations":[{"end":114,"start":1}],"match_end":114,"match_start":1},{"dbname":"GENE3D","id":"G3DSA:2.30.29.70","interpro_description":"Proteasomal ubiquitin receptor Rpn13/ADRM1, Pru domain superfamily","interpro_id":"IPR038633","interpro_name":"Rpn13/ADRM1_Pru_sf","locations":[{"end":114,"start":1}],"match_end":114,"match_start":1,"name":"Proteasomal ubiquitin receptor Rpn13/ADRM1"},{"dbname":"GENE3D","id":"G3DSA:1.10.2020.20","interpro_description":"RPN13, DEUBAD domain superfamily","interpro_id":"IPR038108","interpro_name":"RPN13_DEUBAD_sf","locations":[{"end":284,"start":170}],"match_end":284,"match_start":170},{"dbname":"PANTHER","id":"PTHR12225","interpro_description":"Proteasomal ubiquitin receptor Rpn13/ADRM1","interpro_id":"IPR006773","interpro_name":"Rpn13/ADRM1","locations":[{"end":291,"start":3}],"match_end":291,"match_start":3,"name":"ADHESION REGULATING MOLECULE 1  110 KDA CELL MEMBRANE GLYCOPROTEIN"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":169,"start":144}],"match_end":169,"match_start":144,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.3","end_pos":780585,"start_pos":779563,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":64,"start":48}},{"range":{"end":169,"start":128}}],"name":"rpn1301","ortholog_annotations":[{"gene_uniquename":"SJAG_04484","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:15759","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04484","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC342.04","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04484","ortholog_taxonid":4932,"ortholog_uniquename":"YLR421C","reference_uniquename":"PMID:29761456"}],"product":"19S proteasome regulatory subunit Rpn13a","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0070628"],"not-binding":["GO:0061133"]}},"subset_termids":["GO:0005829","GO:0005634","GO:0030163","GO:0030234","GO:0140096","GO:0098772","GO:0008233"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005634":null,"GO:0005829":null,"GO:0008541":null,"GO:0043161":null,"GO:0061133":null,"GO:0070628":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04484.1"],"transcripts_by_uniquename":{"SJAG_04484.1":null},"uniprot_identifier":"B6K6Y4","uniquename":"SJAG_04484"}


id: SJAG_04486
data:
  {"binding_sites":[{"assigned_by":"UniProtKB","ligand":"ATP","range":{"end":41,"start":41}}],"cv_annotations":{"biological_process":[{"annotations":[71651],"is_not":false,"summary":null,"term":"GO:0035556"},{"annotations":[99323],"is_not":false,"summary":null,"term":"GO:0010971"}],"cellular_component":[{"annotations":[99318],"is_not":false,"summary":null,"term":"GO:0110115"},{"annotations":[99320],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[99322],"is_not":false,"summary":null,"term":"GO:0005634"}],"molecular_function":[{"annotations":[58784],"is_not":false,"summary":null,"term":"GO:0005524"},{"annotations":[71649],"is_not":false,"summary":null,"term":"GO:0004674"},{"annotations":[99328],"is_not":false,"summary":null,"term":"GO:0004712"}]},"dbxrefs":["InterPro:IPR017441","EnsemblGenomes-Tr:EEB09289","GOA:B6K6Y5","InterPro:IPR000719","UniProtKB/TrEMBL:B6K6Y5","InterPro:IPR008271","InterPro:IPR011009","EnsemblGenomes-Gn:SJAG_04486"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":432,"start":403}},{"range":{"end":486,"start":458}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"sdo1","uniquename":"SJAG_04491"},{"name":"mrpl40","uniquename":"SJAG_04490"},{"name":"did4","uniquename":"SJAG_04489"},{"name":"pct1","uniquename":"SJAG_04488"},{"name":"dut1","uniquename":"SJAG_04487"},{"name":"cdr1","uniquename":"SJAG_04486"},{"name":"rpn1301","uniquename":"SJAG_04484"},{"name":"gas4","uniquename":"SJAG_04483"},{"name":"qrs1","uniquename":"SJAG_04482"},{"name":"srm1","uniquename":"SJAG_04481"},{"name":"dbp5","uniquename":"SJAG_04480"}],"genes_by_uniquename":{"HGNC:11405":null,"HGNC:18994":null,"SJAG_04486":null,"SPAC644.06c":null,"YCL024W":null,"YDR507C":null,"YKL101W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Protein kinase domain","id":"PF00069","interpro_description":"Protein kinase domain","interpro_id":"IPR000719","interpro_name":"Prot_kinase_dom","locations":[{"end":258,"start":14}],"match_end":258,"match_start":14,"name":"Pkinase"},{"dbname":"CDD","description":"STKc_BRSK1_2","id":"cd14081","locations":[{"end":258,"start":10}],"match_end":258,"match_start":10,"name":"STKc_BRSK1_2"},{"dbname":"PROSITE_PATTERNS","description":"Serine/Threonine protein kinases active-site signature.","id":"PS00108","interpro_description":"Serine/threonine-protein kinase, active site","interpro_id":"IPR008271","interpro_name":"Ser/Thr_kinase_AS","locations":[{"end":136,"start":124}],"match_end":136,"match_start":124,"name":"PROTEIN_KINASE_ST"},{"dbname":"PROSITE_PATTERNS","description":"Protein kinases ATP-binding region signature.","id":"PS00107","interpro_description":"Protein kinase, ATP binding site","interpro_id":"IPR017441","interpro_name":"Protein_kinase_ATP_BS","locations":[{"end":41,"start":18}],"match_end":41,"match_start":18,"name":"PROTEIN_KINASE_ATP"},{"dbname":"PROSITE_PROFILES","description":"Protein kinase domain profile.","id":"PS50011","interpro_description":"Protein kinase domain","interpro_id":"IPR000719","interpro_name":"Prot_kinase_dom","locations":[{"end":258,"start":12}],"match_end":258,"match_start":12,"name":"PROTEIN_KINASE_DOM"},{"dbname":"SMART","id":"SM00220","interpro_description":"Protein kinase domain","interpro_id":"IPR000719","interpro_name":"Prot_kinase_dom","locations":[{"end":258,"start":12}],"match_end":258,"match_start":12,"name":"serkin_6"},{"dbname":"FUNFAM","description":"Maternal embryonic leucine zipper kinase","id":"G3DSA:1.10.510.10:FF:000571","locations":[{"end":276,"start":2}],"match_end":276,"match_start":2},{"dbname":"SUPERFAMILY","id":"SSF56112","interpro_description":"Protein kinase-like domain superfamily","interpro_id":"IPR011009","interpro_name":"Kinase-like_dom_sf","locations":[{"end":283,"start":5}],"match_end":283,"match_start":5,"name":"Protein kinase-like (PK-like)"},{"dbname":"GENE3D","id":"G3DSA:1.10.510.10","locations":[{"end":300,"start":2}],"match_end":300,"match_start":2,"name":"Transferase(Phosphotransferase) domain 1"},{"dbname":"PANTHER","id":"PTHR24346","locations":[{"end":370,"start":5}],"match_end":370,"match_start":5,"name":"MAP/MICROTUBULE AFFINITY-REGULATING KINASE"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":432,"start":403},{"end":486,"start":458}],"match_end":486,"match_start":403,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polar","description":"consensus disorder prediction","id":"mobidb-lite-Polar","locations":[{"end":432,"start":422},{"end":471,"start":458}],"match_end":471,"match_start":422,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polyampholyte","description":"consensus disorder prediction","id":"mobidb-lite-Polyampholyte","locations":[{"end":416,"start":403}],"match_end":416,"match_start":403,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.3","end_pos":778101,"start_pos":776047,"strand":"reverse"},"name":"cdr1","ortholog_annotations":[{"gene_uniquename":"SJAG_04486","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:11405","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04486","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:18994","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04486","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC644.06c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04486","ortholog_taxonid":4932,"ortholog_uniquename":"YCL024W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04486","ortholog_taxonid":4932,"ortholog_uniquename":"YDR507C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04486","ortholog_taxonid":4932,"ortholog_uniquename":"YKL101W","reference_uniquename":"PMID:29761456"}],"product":"serine/threonine protein kinase (NIM1 family) Cdr1/Nim1","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0005524"],"not-binding":["GO:0004712","GO:0004674"]}},"subset_termids":["GO:0005634","GO:0140096","GO:0005829","GO:0023052","GO:0005938","GO:0016301","GO:0004672","GO:0044772"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0004674":null,"GO:0004712":null,"GO:0005524":null,"GO:0005634":null,"GO:0005829":null,"GO:0010971":null,"GO:0035556":null,"GO:0110115":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04486.1"],"transcripts_by_uniquename":{"SJAG_04486.1":null},"uniprot_identifier":"B6K6Y5","uniquename":"SJAG_04486"}


id: SJAG_04487
data:
  {"cv_annotations":{"biological_process":[{"annotations":[99312],"is_not":false,"summary":null,"term":"GO:0035863"},{"annotations":[79815],"is_not":false,"summary":null,"term":"GO:0006226"},{"annotations":[79813],"is_not":false,"summary":null,"term":"GO:0046081"}],"cellular_component":[{"annotations":[99310],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[99311],"is_not":false,"summary":null,"term":"GO:0005634"}],"molecular_function":[{"annotations":[99315],"is_not":false,"summary":null,"term":"GO:0035870"},{"annotations":[79814],"is_not":false,"summary":null,"term":"GO:0004170"},{"annotations":[79812],"is_not":false,"summary":null,"term":"GO:0000287"}],"mondo":[{"annotations":[86099],"is_not":false,"summary":null,"term":"MONDO:0859288"}]},"dbxrefs":["InterPro:IPR029054","InterPro:IPR036157","InterPro:IPR008181","UniProtKB/TrEMBL:B6K6Y6","InterPro:IPR033704","EnsemblGenomes-Gn:SJAG_04487","EnsemblGenomes-Tr:EEB09290","GOA:B6K6Y6"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"rpf1","uniquename":"SJAG_04492"},{"name":"sdo1","uniquename":"SJAG_04491"},{"name":"mrpl40","uniquename":"SJAG_04490"},{"name":"did4","uniquename":"SJAG_04489"},{"name":"pct1","uniquename":"SJAG_04488"},{"name":"dut1","uniquename":"SJAG_04487"},{"name":"cdr1","uniquename":"SJAG_04486"},{"name":"rpn1301","uniquename":"SJAG_04484"},{"name":"gas4","uniquename":"SJAG_04483"},{"name":"qrs1","uniquename":"SJAG_04482"},{"name":"srm1","uniquename":"SJAG_04481"}],"genes_by_uniquename":{"HGNC:3078":null,"SJAG_04487":null,"SPAC644.05c":null,"YBR252W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"dUTPase","id":"PF00692","interpro_description":"dUTPase-like","interpro_id":"IPR029054","interpro_name":"dUTPase-like","locations":[{"end":139,"start":11}],"match_end":139,"match_start":11,"name":"dUTPase"},{"dbname":"CDD","description":"trimeric_dUTPase","id":"cd07557","interpro_description":"dUTPase, trimeric","interpro_id":"IPR033704","interpro_name":"dUTPase_trimeric","locations":[{"end":111,"start":23}],"match_end":111,"match_start":23,"name":"trimeric_dUTPase"},{"dbname":"FUNFAM","description":"dUTP pyrophosphatase","id":"G3DSA:2.70.40.10:FF:000007","locations":[{"end":140,"start":1}],"match_end":140,"match_start":1},{"dbname":"SUPERFAMILY","id":"SSF51283","interpro_description":"dUTPase-like superfamily","interpro_id":"IPR036157","interpro_name":"dUTPase-like_sf","locations":[{"end":140,"start":3}],"match_end":140,"match_start":3,"name":"dUTPase-like"},{"dbname":"GENE3D","id":"G3DSA:2.70.40.10","interpro_description":"dUTPase-like superfamily","interpro_id":"IPR036157","interpro_name":"dUTPase-like_sf","locations":[{"end":140,"start":1}],"match_end":140,"match_start":1},{"dbname":"PANTHER","id":"PTHR11241","interpro_description":"Deoxyuridine triphosphate nucleotidohydrolase","interpro_id":"IPR008181","interpro_name":"dUTPase","locations":[{"end":140,"start":3}],"match_end":140,"match_start":3,"name":"DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE"},{"dbname":"NCBIFAM","description":"dUTP diphosphatase","id":"NF001862","locations":[{"end":140,"start":3}],"match_end":140,"match_start":3,"name":"PRK00601.1"},{"dbname":"NCBIFAM","description":"dUTP diphosphatase","id":"TIGR00576","interpro_description":"Deoxyuridine triphosphate nucleotidohydrolase","interpro_id":"IPR008181","interpro_name":"dUTPase","locations":[{"end":140,"start":4}],"match_end":140,"match_start":4,"name":"dut"}],"location":{"chromosome_name":"supercont5.3","end_pos":775574,"start_pos":775152,"strand":"reverse"},"name":"dut1","ortholog_annotations":[{"gene_uniquename":"SJAG_04487","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:3078","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04487","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC644.05c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04487","ortholog_taxonid":4932,"ortholog_uniquename":"YBR252W","reference_uniquename":"PMID:29761456"}],"product":"deoxyuridine 5'-triphosphate nucleotidohydrolase","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0000287"],"not-binding":["GO:0035870","GO:0004170"]}},"subset_termids":["GO:0047429","GO:0005829","GO:0005634","GO:0055086"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000287":null,"GO:0004170":null,"GO:0005634":null,"GO:0005829":null,"GO:0006226":null,"GO:0035863":null,"GO:0035870":null,"GO:0046081":null,"MONDO:0859288":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04487.1"],"transcripts_by_uniquename":{"SJAG_04487.1":null},"uniprot_identifier":"B6K6Y6","uniquename":"SJAG_04487"}


id: SJAG_04488
data:
  {"cv_annotations":{"biological_process":[{"annotations":[68998],"is_not":false,"summary":null,"term":"GO:0006370"}],"cellular_component":[{"annotations":[68997],"is_not":false,"summary":null,"term":"GO:0031533"}],"molecular_function":[{"annotations":[99307],"is_not":false,"summary":null,"term":"GO:0016887"},{"annotations":[99308],"is_not":false,"summary":null,"term":"GO:0140818"},{"annotations":[68995],"is_not":false,"summary":null,"term":"GO:0004651"}]},"dbxrefs":["InterPro:IPR033469","InterPro:IPR040343","EnsemblGenomes-Tr:EEB09291","EnsemblGenomes-Gn:SJAG_04488","GOA:B6K6Y7","UniProtKB/TrEMBL:B6K6Y7","InterPro:IPR004206","InterPro:IPR037009"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":60,"start":1}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"mrpl28","uniquename":"SJAG_04493"},{"name":"rpf1","uniquename":"SJAG_04492"},{"name":"sdo1","uniquename":"SJAG_04491"},{"name":"mrpl40","uniquename":"SJAG_04490"},{"name":"did4","uniquename":"SJAG_04489"},{"name":"pct1","uniquename":"SJAG_04488"},{"name":"dut1","uniquename":"SJAG_04487"},{"name":"cdr1","uniquename":"SJAG_04486"},{"name":"rpn1301","uniquename":"SJAG_04484"},{"name":"gas4","uniquename":"SJAG_04483"},{"name":"qrs1","uniquename":"SJAG_04482"}],"genes_by_uniquename":{"HGNC:10073":null,"SJAG_04488":null,"SPAC644.04":null,"YMR180C":null,"YPL228W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"mRNA capping enzyme, beta chain","id":"PF02940","interpro_description":"mRNA triphosphatase Cet1-like","interpro_id":"IPR004206","interpro_name":"mRNA_triPase_Cet1","locations":[{"end":284,"start":79}],"match_end":284,"match_start":79,"name":"mRNA_triPase"},{"dbname":"CDD","description":"CYTH-like_mRNA_RTPase","id":"cd07470","interpro_description":"mRNA triphosphatase Cet1-like","interpro_id":"IPR004206","interpro_name":"mRNA_triPase_Cet1","locations":[{"end":319,"start":81}],"match_end":319,"match_start":81,"name":"CYTH-like_mRNA_RTPase"},{"dbname":"SUPERFAMILY","id":"SSF55154","interpro_description":"CYTH-like domain superfamily","interpro_id":"IPR033469","interpro_name":"CYTH-like_dom_sf","locations":[{"end":319,"start":46}],"match_end":319,"match_start":46,"name":"CYTH-like phosphatases"},{"dbname":"GENE3D","id":"G3DSA:3.20.100.10","interpro_description":"mRNA triphosphatase Cet1-like superfamily","interpro_id":"IPR037009","interpro_name":"mRNA_triPase_Cet1_sf","locations":[{"end":322,"start":62}],"match_end":322,"match_start":62},{"dbname":"PANTHER","id":"PTHR28118","interpro_description":"RNA 5'-triphosphatase Cet1/Ctl1","interpro_id":"IPR040343","interpro_name":"Cet1/Ctl1","locations":[{"end":322,"start":28}],"match_end":322,"match_start":28,"name":"POLYNUCLEOTIDE 5'-TRIPHOSPHATASE-RELATED"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":60,"start":1}],"match_end":60,"match_start":1,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polyampholyte","description":"consensus disorder prediction","id":"mobidb-lite-Polyampholyte","locations":[{"end":18,"start":1}],"match_end":18,"match_start":1,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.3","end_pos":775075,"start_pos":774021,"strand":"forward"},"name":"pct1","ortholog_annotations":[{"gene_uniquename":"SJAG_04488","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:10073","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04488","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC644.04","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04488","ortholog_taxonid":4932,"ortholog_uniquename":"YMR180C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04488","ortholog_taxonid":4932,"ortholog_uniquename":"YPL228W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04488","ortholog_taxonid":4932,"ortholog_uniquename":"YPL228W","reference_uniquename":"PMID:26896847"}],"product":"RNA 5'-triphosphatase","references_by_uniquename":{"GO_REF:0000003":null,"GO_REF:0000104":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0140818","GO:0004651","GO:0016887"]}},"subset_termids":["GO:0005634","GO:0016788","GO:0140098","GO:0016887","GO:0016071"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0004651":null,"GO:0006370":null,"GO:0016887":null,"GO:0031533":null,"GO:0140818":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04488.1"],"transcripts_by_uniquename":{"SJAG_04488.1":null},"uniprot_identifier":"B6K6Y7","uniquename":"SJAG_04488"}


id: SJAG_04489
data:
  {"alleles_by_uniquename":{"SJAG_04489:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04489","name":"did4delta","uniquename":"SJAG_04489:allele-1"}},"coiled_coil_coords":[{"range":{"end":45,"start":18}},{"range":{"end":89,"start":69}}],"cv_annotations":{"biological_process":[{"annotations":[98282],"is_not":false,"summary":null,"term":"GO:0007084"},{"annotations":[98283],"is_not":false,"summary":null,"term":"GO:0043328"}],"cellular_component":[{"annotations":[71436],"is_not":false,"summary":null,"term":"GO:0000815"},{"annotations":[98279],"is_not":false,"summary":null,"term":"GO:0180028"},{"annotations":[71435],"is_not":false,"summary":null,"term":"GO:0005771"}],"mondo":[{"annotations":[85678],"is_not":false,"summary":null,"term":"MONDO:0010936"}],"single_locus_phenotype":[{"annotations":[119762],"is_not":false,"summary":null,"term":"FYPO:0001370"},{"annotations":[119756,119757,119761],"is_not":false,"summary":null,"term":"FYPO:0007771"}]},"dbxrefs":["EnsemblGenomes-Gn:SJAG_04489","UniProtKB/TrEMBL:B6K6Y8","GOA:B6K6Y8","InterPro:IPR005024","EnsemblGenomes-Tr:EEB09292"],"deletion_viability":"unknown","feature_publications":[{"reference_uniquename":"PMID:32109380","source":"canto"}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"mrps12a","uniquename":"SJAG_04494"},{"name":"mrpl28","uniquename":"SJAG_04493"},{"name":"rpf1","uniquename":"SJAG_04492"},{"name":"sdo1","uniquename":"SJAG_04491"},{"name":"mrpl40","uniquename":"SJAG_04490"},{"name":"did4","uniquename":"SJAG_04489"},{"name":"pct1","uniquename":"SJAG_04488"},{"name":"dut1","uniquename":"SJAG_04487"},{"name":"cdr1","uniquename":"SJAG_04486"},{"name":"rpn1301","uniquename":"SJAG_04484"},{"name":"gas4","uniquename":"SJAG_04483"}],"genes_by_uniquename":{"HGNC:24537":null,"HGNC:30216":null,"SJAG_01745":null,"SJAG_03892":null,"SJAG_04489":null,"SPAC4F8.01":null,"YKL002W":null},"genotypes_by_uniquename":{"did4delta":{"display_name":"did4delta","display_uniquename":"did4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04489:allele-1","expression":"Null"}]}]}},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Snf7","id":"PF03357","interpro_description":"Snf7 family","interpro_id":"IPR005024","interpro_name":"Snf7_fam","locations":[{"end":186,"start":22}],"match_end":186,"match_start":22,"name":"Snf7"},{"dbname":"GENE3D","id":"G3DSA:6.10.140.1230","locations":[{"end":184,"start":9}],"match_end":184,"match_start":9},{"dbname":"PANTHER","id":"PTHR10476","interpro_description":"Snf7 family","interpro_id":"IPR005024","interpro_name":"Snf7_fam","locations":[{"end":191,"start":7}],"match_end":191,"match_start":7,"name":"CHARGED MULTIVESICULAR BODY PROTEIN"},{"dbname":"COILS","id":"Coil","locations":[{"end":45,"start":18},{"end":89,"start":69}],"match_end":89,"match_start":18,"name":"Coil"}],"location":{"chromosome_name":"supercont5.3","end_pos":773618,"start_pos":772992,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":63,"start":50}},{"range":{"end":107,"start":96}},{"range":{"end":171,"start":146}}],"name":"did4","ortholog_annotations":[{"gene_uniquename":"SJAG_04489","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:24537","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04489","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:30216","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04489","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC4F8.01","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04489","ortholog_taxonid":4932,"ortholog_uniquename":"YKL002W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04489","ortholog_taxonid":4932,"ortholog_uniquename":"YKL002W","reference_uniquename":"PMID:26896847"}],"physical_interactions":[{"annotation_date":"2021-06-17","evidence":"Reconstituted Complex","gene_uniquename":"SJAG_04489","interactor_uniquename":"SJAG_03892","reference_uniquename":"PMID:32109380","source_database":"JaponicusDB","throughput":"low"}],"product":"ESCRT III complex subunit Did4","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null,"PMID:32109380":null},"split_by_parent_groups":{"single_locus_phenotype":{"cell_phenotype":["FYPO:0001370","FYPO:0007771"]}},"subset_termids":["GO:0005768","MONDO:0002039","GO:0005634","GO:0061024","MONDO:0005559","FYPO:0001320","GO:0031410","FYPO:0000138","GO:0030163","GO:0016192"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"FYPO:0001370":null,"FYPO:0007771":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null,"GO:0000815":null,"GO:0005771":null,"GO:0007084":null,"GO:0043328":null,"GO:0180028":null,"MONDO:0010936":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04489.1"],"transcripts_by_uniquename":{"SJAG_04489.1":null},"uniprot_identifier":"B6K6Y8","uniquename":"SJAG_04489"}


id: SJAG_04490
data:
  {"cv_annotations":{"biological_process":[{"annotations":[98286],"is_not":false,"summary":null,"term":"GO:0032543"}],"cellular_component":[{"annotations":[98284],"is_not":false,"summary":null,"term":"GO:0005762"}],"molecular_function":[{"annotations":[98287],"is_not":false,"summary":null,"term":"GO:0003723"},{"annotations":[59071],"is_not":false,"summary":null,"term":"GO:0003735"}]},"dbxrefs":["InterPro:IPR008991","InterPro:IPR014722","EnsemblGenomes-Tr:EEB09293","EnsemblGenomes-Gn:SJAG_04490","GOA:B6K6Y9","InterPro:IPR005824","InterPro:IPR005825","InterPro:IPR003256","UniProtKB/TrEMBL:B6K6Y9"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":270,"start":244}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"hxk2","uniquename":"SJAG_04495"},{"name":"mrps12a","uniquename":"SJAG_04494"},{"name":"mrpl28","uniquename":"SJAG_04493"},{"name":"rpf1","uniquename":"SJAG_04492"},{"name":"sdo1","uniquename":"SJAG_04491"},{"name":"mrpl40","uniquename":"SJAG_04490"},{"name":"did4","uniquename":"SJAG_04489"},{"name":"pct1","uniquename":"SJAG_04488"},{"name":"dut1","uniquename":"SJAG_04487"},{"name":"cdr1","uniquename":"SJAG_04486"},{"name":"rpn1301","uniquename":"SJAG_04484"}],"genes_by_uniquename":{"HGNC:14037":null,"SJAG_04490":null,"SPAC4F8.02c":null,"YPL173W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Large ribosomal subunit protein uL24m","id":"PF22682","locations":[{"end":244,"start":41}],"match_end":244,"match_start":41,"name":"Ribosomal_uL24m-like"},{"dbname":"PROSITE_PATTERNS","description":"Ribosomal protein L24 signature.","id":"PS01108","interpro_description":"Large ribosomal subunit protein uL24, conserved site","interpro_id":"IPR005825","interpro_name":"Ribosomal_uL24_CS","locations":[{"end":61,"start":44}],"match_end":61,"match_start":44,"name":"RIBOSOMAL_L24"},{"dbname":"SMART","id":"SM00739","interpro_description":"KOW","interpro_id":"IPR005824","interpro_name":"KOW","locations":[{"end":67,"start":40}],"match_end":67,"match_start":40,"name":"kow_9"},{"dbname":"SUPERFAMILY","id":"SSF50104","interpro_description":"Translation protein SH3-like domain superfamily","interpro_id":"IPR008991","interpro_name":"Translation_prot_SH3-like_sf","locations":[{"end":128,"start":32}],"match_end":128,"match_start":32,"name":"Translation proteins SH3-like domain"},{"dbname":"GENE3D","id":"G3DSA:2.30.30.30","interpro_description":"Large ribosomal subunit protein uL2, domain 2","interpro_id":"IPR014722","interpro_name":"Rib_uL2_dom2","locations":[{"end":143,"start":30}],"match_end":143,"match_start":30},{"dbname":"PANTHER","id":"PTHR12903","interpro_description":"Large ribosomal subunit protein uL24","interpro_id":"IPR003256","interpro_name":"Ribosomal_uL24","locations":[{"end":228,"start":27}],"match_end":228,"match_start":27,"name":"MITOCHONDRIAL RIBOSOMAL PROTEIN L24"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":270,"start":244}],"match_end":270,"match_start":244,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polar","description":"consensus disorder prediction","id":"mobidb-lite-Polar","locations":[{"end":270,"start":253}],"match_end":270,"match_start":253,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.3","end_pos":772811,"start_pos":771882,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":82,"start":66}}],"name":"mrpl40","ortholog_annotations":[{"gene_uniquename":"SJAG_04490","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:14037","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04490","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC4F8.02c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04490","ortholog_taxonid":4932,"ortholog_uniquename":"YPL173W","reference_uniquename":"PMID:29761456"}],"product":"mitochondrial ribosomal protein subunit L24","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0003723"],"not-binding":["GO:0003735"]}},"subset_termids":["GO:0140053","GO:0005739","GO:0005198"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0003723":null,"GO:0003735":null,"GO:0005762":null,"GO:0032543":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04490.1"],"transcripts_by_uniquename":{"SJAG_04490.1":null},"uniprot_identifier":"B6K6Y9","uniquename":"SJAG_04490"}


id: SJAG_04491
data:
  {"coiled_coil_coords":[{"range":{"end":202,"start":182}}],"cv_annotations":{"biological_process":[{"annotations":[57459],"is_not":false,"summary":null,"term":"GO:0042254"}],"cellular_component":[{"annotations":[98289],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[98290],"is_not":false,"summary":null,"term":"GO:0005730"},{"annotations":[98292],"is_not":false,"summary":null,"term":"GO:0030687"}],"molecular_function":[{"annotations":[98294],"is_not":false,"summary":null,"term":"GO:0005085"}],"mondo":[{"annotations":[87634],"is_not":false,"summary":null,"term":"MONDO:0012197"},{"annotations":[86600],"is_not":false,"summary":null,"term":"MONDO:0044204"}]},"dbxrefs":["InterPro:IPR018023","InterPro:IPR036786","InterPro:IPR019783","EnsemblGenomes-Gn:SJAG_04491","InterPro:IPR018978","GOA:B6K6Z0","InterPro:IPR037188","EnsemblGenomes-Tr:EEB09294","InterPro:IPR002140","InterPro:IPR039100","UniProtKB/TrEMBL:B6K6Z0"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"sea2","uniquename":"SJAG_04496"},{"name":"hxk2","uniquename":"SJAG_04495"},{"name":"mrps12a","uniquename":"SJAG_04494"},{"name":"mrpl28","uniquename":"SJAG_04493"},{"name":"rpf1","uniquename":"SJAG_04492"},{"name":"sdo1","uniquename":"SJAG_04491"},{"name":"mrpl40","uniquename":"SJAG_04490"},{"name":"did4","uniquename":"SJAG_04489"},{"name":"pct1","uniquename":"SJAG_04488"},{"name":"dut1","uniquename":"SJAG_04487"},{"name":"cdr1","uniquename":"SJAG_04486"}],"genes_by_uniquename":{"HGNC:19440":null,"SJAG_04491":null,"SPAC4F8.03":null,"YLR022C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"SBDS protein, C-terminal domain","id":"PF20268","interpro_description":"Ribosome maturation protein SDO1/SBDS, C-terminal domain","interpro_id":"IPR046928","interpro_name":"SDO1/SBDS_C","locations":[{"end":239,"start":174}],"match_end":239,"match_start":174,"name":"SBDS_C"},{"dbname":"PFAM","description":"Shwachman-Bodian-Diamond syndrome (SBDS) N-terminal domain","id":"PF01172","interpro_description":"Ribosome maturation protein SDO1/SBDS, N-terminal","interpro_id":"IPR019783","interpro_name":"SDO1/SBDS_N","locations":[{"end":100,"start":14}],"match_end":100,"match_start":14,"name":"SBDS_N"},{"dbname":"PFAM","description":"SBDS protein, domain II","id":"PF09377","interpro_description":"Ribosome maturation protein SDO1/SBDS, central domain","interpro_id":"IPR018978","interpro_name":"SDO1/SBDS_central","locations":[{"end":172,"start":109}],"match_end":172,"match_start":109,"name":"SBDS_domain_II"},{"dbname":"PROSITE_PATTERNS","description":"Uncharacterized protein family UPF0023 signature.","id":"PS01267","interpro_description":"Ribosome maturation protein SBDS, conserved site","interpro_id":"IPR018023","interpro_name":"Ribosome_mat_SBDS_CS","locations":[{"end":63,"start":44}],"match_end":63,"match_start":44,"name":"UPF0023"},{"dbname":"FUNFAM","description":"SBDS, ribosome maturation factor","id":"G3DSA:3.30.1250.10:FF:000001","locations":[{"end":94,"start":1}],"match_end":94,"match_start":1},{"dbname":"SUPERFAMILY","id":"SSF89895","interpro_description":"Ribosome maturation protein SBDS, N-terminal domain superfamily","interpro_id":"IPR036786","interpro_name":"Ribosome_mat_SBDS_N_sf","locations":[{"end":94,"start":10}],"match_end":94,"match_start":10,"name":"FYSH domain"},{"dbname":"SUPERFAMILY","id":"SSF109728","interpro_description":"Ribosome maturation protein Sdo1/SBDS, central domain superfamily","interpro_id":"IPR037188","interpro_name":"Sdo1/SBDS_central_sf","locations":[{"end":162,"start":89}],"match_end":162,"match_start":89,"name":"Hypothetical protein AF0491, middle domain"},{"dbname":"GENE3D","id":"G3DSA:3.30.70.240","locations":[{"end":240,"start":173}],"match_end":240,"match_start":173},{"dbname":"GENE3D","id":"G3DSA:1.10.10.900","interpro_description":"Ribosome maturation protein Sdo1/SBDS, central domain superfamily","interpro_id":"IPR037188","interpro_name":"Sdo1/SBDS_central_sf","locations":[{"end":172,"start":98}],"match_end":172,"match_start":98},{"dbname":"GENE3D","id":"G3DSA:3.30.1250.10","interpro_description":"Ribosome maturation protein SBDS, N-terminal domain superfamily","interpro_id":"IPR036786","interpro_name":"Ribosome_mat_SBDS_N_sf","locations":[{"end":94,"start":1}],"match_end":94,"match_start":1},{"dbname":"PANTHER","id":"PTHR10927","interpro_description":"Ribosome maturation protein Sdo1/SBDS-like","interpro_id":"IPR039100","interpro_name":"Sdo1/SBDS-like","locations":[{"end":239,"start":1}],"match_end":239,"match_start":1,"name":"RIBOSOME MATURATION PROTEIN SBDS"},{"dbname":"COILS","id":"Coil","locations":[{"end":202,"start":182}],"match_end":202,"match_start":182,"name":"Coil"},{"dbname":"NCBIFAM","description":"ribosome assembly factor SBDS","id":"TIGR00291","interpro_description":"Ribosome maturation protein Sdo1/SBDS","interpro_id":"IPR002140","interpro_name":"Sdo1/SBDS","locations":[{"end":237,"start":9}],"match_end":237,"match_start":9,"name":"RNA_SBDS"}],"location":{"chromosome_name":"supercont5.3","end_pos":771670,"start_pos":770720,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":208,"start":196}}],"name":"sdo1","ortholog_annotations":[{"gene_uniquename":"SJAG_04491","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:19440","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04491","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC4F8.03","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04491","ortholog_taxonid":4932,"ortholog_uniquename":"YLR022C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04491","ortholog_taxonid":4932,"ortholog_uniquename":"YLR022C","reference_uniquename":"PMID:26896847"}],"product":"SBDS family ribosome assembly protein Sdo1","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0005085"]}},"subset_termids":["MONDO:0002280","GO:0005085","GO:0030234","GO:0005730","MONDO:0006025","GO:0005829","GO:0005634","GO:0003924","MONDO:0005570","GO:0098772","GO:0030684","GO:0042254"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005085":null,"GO:0005730":null,"GO:0005829":null,"GO:0030687":null,"GO:0042254":null,"MONDO:0012197":null,"MONDO:0044204":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04491.1"],"transcripts_by_uniquename":{"SJAG_04491.1":null},"uniprot_identifier":"B6K6Z0","uniquename":"SJAG_04491"}


id: SJAG_04492
data:
  {"coiled_coil_coords":[{"range":{"end":45,"start":15}}],"cv_annotations":{"biological_process":[{"annotations":[98300],"is_not":false,"summary":null,"term":"GO:1902626"},{"annotations":[98301],"is_not":false,"summary":null,"term":"GO:0180023"},{"annotations":[98302],"is_not":false,"summary":null,"term":"GO:0000466"},{"annotations":[98303],"is_not":false,"summary":null,"term":"GO:0000463"}],"cellular_component":[{"annotations":[72344],"is_not":false,"summary":null,"term":"GO:0005730"},{"annotations":[72345],"is_not":false,"summary":null,"term":"GO:0030687"},{"annotations":[98299],"is_not":false,"summary":null,"term":"GO:0005732"}],"molecular_function":[{"annotations":[59579],"is_not":false,"summary":null,"term":"GO:0042134"}]},"dbxrefs":["EnsemblGenomes-Tr:EEB09295","GOA:B6K6Z1","InterPro:IPR007109","EnsemblGenomes-Gn:SJAG_04492","UniProtKB/TrEMBL:B6K6Z1"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":50,"start":22}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"spp42","uniquename":"SJAG_04497"},{"name":"sea2","uniquename":"SJAG_04496"},{"name":"hxk2","uniquename":"SJAG_04495"},{"name":"mrps12a","uniquename":"SJAG_04494"},{"name":"mrpl28","uniquename":"SJAG_04493"},{"name":"rpf1","uniquename":"SJAG_04492"},{"name":"sdo1","uniquename":"SJAG_04491"},{"name":"mrpl40","uniquename":"SJAG_04490"},{"name":"did4","uniquename":"SJAG_04489"},{"name":"pct1","uniquename":"SJAG_04488"},{"name":"dut1","uniquename":"SJAG_04487"}],"genes_by_uniquename":{"HGNC:30350":null,"SJAG_04492":null,"SPAC4F8.04":null,"YHR088W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Brix domain","id":"PF04427","interpro_description":"Brix domain","interpro_id":"IPR007109","interpro_name":"Brix","locations":[{"end":275,"start":102}],"match_end":275,"match_start":102,"name":"Brix"},{"dbname":"PROSITE_PROFILES","description":"Brix domain profile.","id":"PS50833","interpro_description":"Brix domain","interpro_id":"IPR007109","interpro_name":"Brix","locations":[{"end":283,"start":94}],"match_end":283,"match_start":94,"name":"BRIX"},{"dbname":"SMART","id":"SM00879","interpro_description":"Brix domain","interpro_id":"IPR007109","interpro_name":"Brix","locations":[{"end":277,"start":97}],"match_end":277,"match_start":97,"name":"Brix_2"},{"dbname":"FUNFAM","description":"Ribosome production factor 1","id":"G3DSA:3.40.50.10480:FF:000002","locations":[{"end":273,"start":94}],"match_end":273,"match_start":94},{"dbname":"SUPERFAMILY","id":"SSF52954","locations":[{"end":280,"start":94}],"match_end":280,"match_start":94,"name":"Class II aaRS ABD-related"},{"dbname":"GENE3D","id":"G3DSA:3.40.50.10480","locations":[{"end":272,"start":94}],"match_end":272,"match_start":94},{"dbname":"PANTHER","id":"PTHR22734","interpro_description":"U3 snoRNP protein/Ribosome production factor 1","interpro_id":"IPR044281","interpro_name":"IMP4/RPF1","locations":[{"end":306,"start":3}],"match_end":306,"match_start":3,"name":"U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4"},{"dbname":"COILS","id":"Coil","locations":[{"end":45,"start":15}],"match_end":45,"match_start":15,"name":"Coil"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":50,"start":22}],"match_end":50,"match_start":22,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polyampholyte","description":"consensus disorder prediction","id":"mobidb-lite-Polyampholyte","locations":[{"end":47,"start":22}],"match_end":47,"match_start":22,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.3","end_pos":770419,"start_pos":769499,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":43,"start":17}},{"range":{"end":81,"start":66}}],"name":"rpf1","ortholog_annotations":[{"gene_uniquename":"SJAG_04492","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:30350","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04492","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC4F8.04","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04492","ortholog_taxonid":4932,"ortholog_uniquename":"YHR088W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04492","ortholog_taxonid":4932,"ortholog_uniquename":"YHR088W","reference_uniquename":"PMID:26896847"}],"product":"Brix domain protein Rpf1","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0042134"]}},"subset_termids":["GO:0030684","GO:0042254","GO:0005730","GO:0005634","GO:0065003"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000463":null,"GO:0000466":null,"GO:0005730":null,"GO:0005732":null,"GO:0030687":null,"GO:0042134":null,"GO:0180023":null,"GO:1902626":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04492.1"],"transcripts_by_uniquename":{"SJAG_04492.1":null},"uniprot_identifier":"B6K6Z1","uniquename":"SJAG_04492"}


id: SJAG_04493
data:
  {"cv_annotations":{"biological_process":[{"annotations":[69535],"is_not":false,"summary":null,"term":"GO:0032543"}],"cellular_component":[{"annotations":[98305],"is_not":false,"summary":null,"term":"GO:0005762"}],"molecular_function":[{"annotations":[69534],"is_not":false,"summary":null,"term":"GO:0003735"}]},"dbxrefs":["EnsemblGenomes-Tr:EEB09296","GOA:B6K6Z2","UniProtKB/TrEMBL:B6K6Z2","EnsemblGenomes-Gn:SJAG_04493","InterPro:IPR019192"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"rng2","uniquename":"SJAG_04498"},{"name":"spp42","uniquename":"SJAG_04497"},{"name":"sea2","uniquename":"SJAG_04496"},{"name":"hxk2","uniquename":"SJAG_04495"},{"name":"mrps12a","uniquename":"SJAG_04494"},{"name":"mrpl28","uniquename":"SJAG_04493"},{"name":"rpf1","uniquename":"SJAG_04492"},{"name":"sdo1","uniquename":"SJAG_04491"},{"name":"mrpl40","uniquename":"SJAG_04490"},{"name":"did4","uniquename":"SJAG_04489"},{"name":"pct1","uniquename":"SJAG_04488"}],"genes_by_uniquename":{"HGNC:14491":null,"SJAG_04493":null,"SPAC4F8.05c":null,"YDR462W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Mitochondrial ribosomal protein L28","id":"PF09812","interpro_description":"Large ribosomal subunit protein mL40","interpro_id":"IPR019192","interpro_name":"Ribosomal_mL40","locations":[{"end":104,"start":30}],"match_end":104,"match_start":30,"name":"MRP-L28"},{"dbname":"GENE3D","id":"G3DSA:6.10.250.3440","locations":[{"end":107,"start":2}],"match_end":107,"match_start":2},{"dbname":"PANTHER","id":"PTHR39150","interpro_description":"Large ribosomal subunit protein mL40, fungi","interpro_id":"IPR042831","interpro_name":"Ribosomal_mL40_fung","locations":[{"end":105,"start":3}],"match_end":105,"match_start":3,"name":"54S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL"}],"location":{"chromosome_name":"supercont5.3","end_pos":769338,"start_pos":769015,"strand":"forward"},"name":"mrpl28","ortholog_annotations":[{"gene_uniquename":"SJAG_04493","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:14491","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04493","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC4F8.05c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04493","ortholog_taxonid":4932,"ortholog_uniquename":"YDR462W","reference_uniquename":"PMID:29761456"}],"product":"mitochondrial ribosomal protein subunit L40","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0003735"]}},"subset_termids":["GO:0140053","GO:0005198","GO:0005739"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0003735":null,"GO:0005762":null,"GO:0032543":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04493.1"],"transcripts_by_uniquename":{"SJAG_04493.1":null},"uniprot_identifier":"B6K6Z2","uniquename":"SJAG_04493"}


id: SJAG_04494
data:
  {"cv_annotations":{"biological_process":[{"annotations":[98312],"is_not":false,"summary":null,"term":"GO:0032543"}],"cellular_component":[{"annotations":[98308],"is_not":false,"summary":null,"term":"GO:0005763"}],"molecular_function":[{"annotations":[80569],"is_not":false,"summary":null,"term":"GO:0003735"}]},"dbxrefs":["EnsemblGenomes-Gn:SJAG_04494","EnsemblGenomes-Tr:EEB09297","GOA:B6K6Z3","InterPro:IPR005679","InterPro:IPR012340","UniProtKB/TrEMBL:B6K6Z3","InterPro:IPR006032"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"hcs1","uniquename":"SJAG_04499"},{"name":"rng2","uniquename":"SJAG_04498"},{"name":"spp42","uniquename":"SJAG_04497"},{"name":"sea2","uniquename":"SJAG_04496"},{"name":"hxk2","uniquename":"SJAG_04495"},{"name":"mrps12a","uniquename":"SJAG_04494"},{"name":"mrpl28","uniquename":"SJAG_04493"},{"name":"rpf1","uniquename":"SJAG_04492"},{"name":"sdo1","uniquename":"SJAG_04491"},{"name":"mrpl40","uniquename":"SJAG_04490"},{"name":"did4","uniquename":"SJAG_04489"}],"genes_by_uniquename":{"HGNC:10380":null,"SJAG_04494":null,"SPAC4F8.06":null,"YNR036C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Ribosomal protein S12/S23","id":"PF00164","interpro_description":"Small ribosomal subunit protein uS12","interpro_id":"IPR006032","interpro_name":"Ribosomal_uS12","locations":[{"end":155,"start":53}],"match_end":155,"match_start":53,"name":"Ribosom_S12_S23"},{"dbname":"CDD","description":"Ribosomal_S12","id":"cd03368","interpro_description":"Ribosomal protein uS12, bacterial-type","interpro_id":"IPR005679","interpro_name":"Ribosomal_uS12_bac","locations":[{"end":142,"start":34}],"match_end":142,"match_start":34,"name":"Ribosomal_S12"},{"dbname":"PROSITE_PATTERNS","description":"Ribosomal protein S12 signature.","id":"PS00055","interpro_description":"Small ribosomal subunit protein uS12","interpro_id":"IPR006032","interpro_name":"Ribosomal_uS12","locations":[{"end":82,"start":75}],"match_end":82,"match_start":75,"name":"RIBOSOMAL_S12"},{"dbname":"PRINTS","description":"Ribosomal protein S12 signature","id":"PR01034","interpro_description":"Ribosomal protein uS12, bacterial-type","interpro_id":"IPR005679","interpro_name":"Ribosomal_uS12_bac","locations":[{"end":154,"start":59}],"match_end":154,"match_start":59,"name":"RIBOSOMALS12"},{"dbname":"FUNFAM","description":"Ribosomal protein S12, mitochondrial","id":"G3DSA:2.40.50.140:FF:000099","locations":[{"end":157,"start":31}],"match_end":157,"match_start":31},{"dbname":"SUPERFAMILY","id":"SSF50249","interpro_description":"Nucleic acid-binding, OB-fold","interpro_id":"IPR012340","interpro_name":"NA-bd_OB-fold","locations":[{"end":155,"start":40}],"match_end":155,"match_start":40,"name":"Nucleic acid-binding proteins"},{"dbname":"GENE3D","id":"G3DSA:2.40.50.140","interpro_description":"Nucleic acid-binding, OB-fold","interpro_id":"IPR012340","interpro_name":"NA-bd_OB-fold","locations":[{"end":157,"start":32}],"match_end":157,"match_start":32},{"dbname":"PANTHER","id":"PTHR11652","interpro_description":"Small ribosomal subunit protein uS12","interpro_id":"IPR006032","interpro_name":"Ribosomal_uS12","locations":[{"end":155,"start":33}],"match_end":155,"match_start":33,"name":"30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER"},{"dbname":"HAMAP","description":"Small ribosomal subunit protein uS12 [rpsL].","id":"MF_00403_B","interpro_description":"Ribosomal protein uS12, bacterial-type","interpro_id":"IPR005679","interpro_name":"Ribosomal_uS12_bac","locations":[{"end":155,"start":32}],"match_end":155,"match_start":32,"name":"Ribosomal_uS12_B"},{"dbname":"NCBIFAM","description":"30S ribosomal protein S12","id":"TIGR00981","interpro_description":"Ribosomal protein uS12, bacterial-type","interpro_id":"IPR005679","interpro_name":"Ribosomal_uS12_bac","locations":[{"end":155,"start":33}],"match_end":155,"match_start":33,"name":"rpsL_bact"}],"location":{"chromosome_name":"supercont5.3","end_pos":766607,"start_pos":766134,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":48,"start":43}}],"name":"mrps12a","ortholog_annotations":[{"gene_uniquename":"SJAG_04494","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:10380","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04494","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC4F8.06","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04494","ortholog_taxonid":4932,"ortholog_uniquename":"YNR036C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04494","ortholog_taxonid":4932,"ortholog_uniquename":"YNR036C","reference_uniquename":"PMID:26896847"}],"product":"mitochondrial ribosomal protein S12 Mrps12a","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0003735"]}},"subset_termids":["GO:0005739","GO:0140053","GO:0005198"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0003735":null,"GO:0005763":null,"GO:0032543":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04494.1"],"transcripts_by_uniquename":{"SJAG_04494.1":null},"uniprot_identifier":"B6K6Z3","uniquename":"SJAG_04494"}


id: SJAG_04495
data:
  {"cv_annotations":{"biological_process":[{"annotations":[98318],"is_not":false,"summary":null,"term":"GO:0061621"},{"annotations":[70454],"is_not":false,"summary":null,"term":"GO:0051156"},{"annotations":[70451],"is_not":false,"summary":null,"term":"GO:0001678"}],"cellular_component":[{"annotations":[70448],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[70447],"is_not":false,"summary":null,"term":"GO:0005739"}],"molecular_function":[{"annotations":[57347],"is_not":false,"summary":null,"term":"GO:0005524"},{"annotations":[57348],"is_not":false,"summary":null,"term":"GO:0005536"},{"annotations":[70449],"is_not":false,"summary":null,"term":"GO:0008865"},{"annotations":[70450],"is_not":false,"summary":null,"term":"GO:0004340"},{"annotations":[98325],"is_not":false,"summary":null,"term":"GO:0019158"}],"mondo":[{"annotations":[87414],"is_not":false,"summary":null,"term":"MONDO:0011534"},{"annotations":[86845],"is_not":false,"summary":null,"term":"MONDO:0011236"},{"annotations":[85496],"is_not":false,"summary":null,"term":"MONDO:0007453"},{"annotations":[87331],"is_not":false,"summary":null,"term":"MONDO:0032807"},{"annotations":[86819],"is_not":false,"summary":null,"term":"MONDO:0009340"},{"annotations":[86765],"is_not":false,"summary":null,"term":"MONDO:0100165"},{"annotations":[87064],"is_not":false,"summary":null,"term":"MONDO:0044320"},{"annotations":[85494],"is_not":false,"summary":null,"term":"MONDO:0005148"}]},"dbxrefs":["EnsemblGenomes-Tr:EEB09298","GOA:B6K6Z4","EnsemblGenomes-Gn:SJAG_04495","InterPro:IPR019807","InterPro:IPR022672","InterPro:IPR022673","InterPro:IPR001312","UniProtKB/TrEMBL:B6K6Z4"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"ctr1","uniquename":"SJAG_04500"},{"name":"hcs1","uniquename":"SJAG_04499"},{"name":"rng2","uniquename":"SJAG_04498"},{"name":"spp42","uniquename":"SJAG_04497"},{"name":"sea2","uniquename":"SJAG_04496"},{"name":"hxk2","uniquename":"SJAG_04495"},{"name":"mrps12a","uniquename":"SJAG_04494"},{"name":"mrpl28","uniquename":"SJAG_04493"},{"name":"rpf1","uniquename":"SJAG_04492"},{"name":"sdo1","uniquename":"SJAG_04491"},{"name":"mrpl40","uniquename":"SJAG_04490"}],"genes_by_uniquename":{"HGNC:4195":null,"HGNC:4922":null,"HGNC:4923":null,"HGNC:4925":null,"SJAG_04495":null,"SPAC4F8.07c":null,"YCL040W":null,"YDR516C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Hexokinase","id":"PF00349","interpro_description":"Hexokinase, N-terminal","interpro_id":"IPR022672","interpro_name":"Hexokinase_N","locations":[{"end":207,"start":9}],"match_end":207,"match_start":9,"name":"Hexokinase_1"},{"dbname":"PFAM","description":"Hexokinase","id":"PF03727","interpro_description":"Hexokinase, C-terminal","interpro_id":"IPR022673","interpro_name":"Hexokinase_C","locations":[{"end":446,"start":216}],"match_end":446,"match_start":216,"name":"Hexokinase_2"},{"dbname":"PROSITE_PATTERNS","description":"Hexokinase domain signature.","id":"PS00378","interpro_description":"Hexokinase, binding site","interpro_id":"IPR019807","interpro_name":"Hexokinase_BS","locations":[{"end":164,"start":139}],"match_end":164,"match_start":139,"name":"HEXOKINASE_1"},{"dbname":"PROSITE_PROFILES","description":"Hexokinase domain profile.","id":"PS51748","interpro_description":"Hexokinase","interpro_id":"IPR001312","interpro_name":"Hexokinase","locations":[{"end":446,"start":3}],"match_end":446,"match_start":3,"name":"HEXOKINASE_2"},{"dbname":"PRINTS","description":"Hexokinase family signature","id":"PR00475","locations":[{"end":81,"start":65},{"end":164,"start":139},{"end":207,"start":191},{"end":230,"start":216},{"end":302,"start":280},{"end":382,"start":360},{"end":447,"start":431}],"match_end":447,"match_start":65,"name":"HEXOKINASE"},{"dbname":"SUPERFAMILY","id":"SSF53067","interpro_description":"ATPase, nucleotide binding domain","interpro_id":"IPR043129","interpro_name":"ATPase_NBD","locations":[{"end":209,"start":4},{"end":452,"start":214}],"match_end":452,"match_start":4,"name":"Actin-like ATPase domain"},{"dbname":"GENE3D","id":"G3DSA:3.40.367.20","locations":[{"end":49,"start":30},{"end":434,"start":208}],"match_end":434,"match_start":30},{"dbname":"GENE3D","id":"G3DSA:3.30.420.40","locations":[{"end":207,"start":50},{"end":445,"start":435}],"match_end":445,"match_start":50},{"dbname":"PANTHER","id":"PTHR19443","interpro_description":"Hexokinase","interpro_id":"IPR001312","interpro_name":"Hexokinase","locations":[{"end":451,"start":6}],"match_end":451,"match_start":6,"name":"HEXOKINASE"}],"location":{"chromosome_name":"supercont5.3","end_pos":765639,"start_pos":764275,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":452,"start":440}}],"name":"hxk2","ortholog_annotations":[{"gene_uniquename":"SJAG_04495","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:4195","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04495","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:4922","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04495","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:4923","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04495","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:4925","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04495","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC4F8.07c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04495","ortholog_taxonid":4932,"ortholog_uniquename":"YCL040W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04495","ortholog_taxonid":4932,"ortholog_uniquename":"YCL040W","reference_uniquename":"PMID:26896847"},{"gene_uniquename":"SJAG_04495","ortholog_taxonid":4932,"ortholog_uniquename":"YDR516C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04495","ortholog_taxonid":4932,"ortholog_uniquename":"YDR516C","reference_uniquename":"PMID:26896847"}],"product":"hexokinase 2","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0005536","GO:0005524"],"not-binding":["GO:0004340","GO:0019158","GO:0008865"]}},"subset_termids":["MONDO:0004736","MONDO:0037792","GO:0016301","MONDO:0005328","GO:0005975","MONDO:0019254","MONDO:0002280","GO:0006091","GO:0005829","MONDO:0005015","GO:0005739","MONDO:0006025","GO:0055086","MONDO:0004335","MONDO:0005066","MONDO:0005570","MONDO:0005244","MONDO:0700092"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0001678":null,"GO:0004340":null,"GO:0005524":null,"GO:0005536":null,"GO:0005739":null,"GO:0005829":null,"GO:0008865":null,"GO:0019158":null,"GO:0051156":null,"GO:0061621":null,"MONDO:0005148":null,"MONDO:0007453":null,"MONDO:0009340":null,"MONDO:0011236":null,"MONDO:0011534":null,"MONDO:0032807":null,"MONDO:0044320":null,"MONDO:0100165":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04495.1"],"transcripts_by_uniquename":{"SJAG_04495.1":null},"uniprot_identifier":"B6K6Z4","uniquename":"SJAG_04495"}


id: SJAG_04496
data:
  {"coiled_coil_coords":[{"range":{"end":478,"start":458}}],"cv_annotations":{"biological_process":[{"annotations":[75784],"is_not":false,"summary":null,"term":"GO:0016239"},{"annotations":[75788],"is_not":false,"summary":null,"term":"GO:1904263"}],"cellular_component":[{"annotations":[75786],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[75787],"is_not":false,"summary":null,"term":"GO:0061700"},{"annotations":[75785],"is_not":false,"summary":null,"term":"GO:0005774"}],"molecular_function":[{"annotations":[63845],"is_not":false,"summary":null,"term":"GO:0008270"}]},"dbxrefs":["EnsemblGenomes-Gn:SJAG_04496","InterPro:IPR036322","InterPro:IPR001841","EnsemblGenomes-Tr:EEB09299","InterPro:IPR017986","InterPro:IPR037590","InterPro:IPR001680","GOA:B6K6Z5","UniProtKB/TrEMBL:B6K6Z5","InterPro:IPR019775","InterPro:IPR015943"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"uniquename":"SJAG_04501"},{"name":"ctr1","uniquename":"SJAG_04500"},{"name":"hcs1","uniquename":"SJAG_04499"},{"name":"rng2","uniquename":"SJAG_04498"},{"name":"spp42","uniquename":"SJAG_04497"},{"name":"sea2","uniquename":"SJAG_04496"},{"name":"hxk2","uniquename":"SJAG_04495"},{"name":"mrps12a","uniquename":"SJAG_04494"},{"name":"mrpl28","uniquename":"SJAG_04493"},{"name":"rpf1","uniquename":"SJAG_04492"},{"name":"sdo1","uniquename":"SJAG_04491"}],"genes_by_uniquename":{"HGNC:20852":null,"SJAG_04496":null,"SPAC4F8.11":null,"YOL138C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"WD domain, G-beta repeat","id":"PF00400","interpro_description":"WD40 repeat","interpro_id":"IPR001680","interpro_name":"WD40_rpt","locations":[{"end":165,"start":129}],"match_end":165,"match_start":129,"name":"WD40"},{"dbname":"PFAM","description":"RING/Ubox like zinc-binding domain","id":"PF17120","interpro_description":"WDR59/RTC1-like, RING zinc finger domain","interpro_id":"IPR049566","interpro_name":"WDR59_RTC1-like_RING_Znf","locations":[{"end":791,"start":740}],"match_end":791,"match_start":740,"name":"zf-RING_16"},{"dbname":"PROSITE_PROFILES","description":"Trp-Asp (WD) repeats profile.","id":"PS50082","interpro_description":"WD40 repeat","interpro_id":"IPR001680","interpro_name":"WD40_rpt","locations":[{"end":174,"start":132}],"match_end":174,"match_start":132,"name":"WD_REPEATS_2"},{"dbname":"PROSITE_PROFILES","description":"Zinc finger RING-type profile.","id":"PS50089","interpro_description":"Zinc finger, RING-type","interpro_id":"IPR001841","interpro_name":"Znf_RING","locations":[{"end":784,"start":742}],"match_end":784,"match_start":742,"name":"ZF_RING_2"},{"dbname":"SMART","id":"SM00320","interpro_description":"WD40 repeat","interpro_id":"IPR001680","interpro_name":"WD40_rpt","locations":[{"end":122,"start":80},{"end":165,"start":125},{"end":208,"start":168},{"end":268,"start":212}],"match_end":268,"match_start":80,"name":"WD40_4"},{"dbname":"SUPERFAMILY","id":"SSF50978","interpro_description":"WD40-repeat-containing domain superfamily","interpro_id":"IPR036322","interpro_name":"WD40_repeat_dom_sf","locations":[{"end":311,"start":43}],"match_end":311,"match_start":43,"name":"WD40 repeat-like"},{"dbname":"GENE3D","id":"G3DSA:2.130.10.10","interpro_description":"WD40/YVTN repeat-like-containing domain superfamily","interpro_id":"IPR015943","interpro_name":"WD40/YVTN_repeat-like_dom_sf","locations":[{"end":214,"start":2},{"end":312,"start":223}],"match_end":312,"match_start":2},{"dbname":"PANTHER","id":"PTHR46200","interpro_description":"GATOR2 complex protein WDR24","interpro_id":"IPR037590","interpro_name":"WDR24","locations":[{"end":230,"start":5}],"match_end":230,"match_start":5,"name":"GATOR COMPLEX PROTEIN WDR24"},{"dbname":"COILS","id":"Coil","locations":[{"end":478,"start":458}],"match_end":478,"match_start":458,"name":"Coil"}],"location":{"chromosome_name":"supercont5.3","end_pos":762567,"start_pos":760092,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":249,"start":236}},{"range":{"end":408,"start":387}},{"range":{"end":479,"start":466}},{"range":{"end":500,"start":486}}],"name":"sea2","ortholog_annotations":[{"gene_uniquename":"SJAG_04496","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:20852","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04496","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC4F8.11","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04496","ortholog_taxonid":4932,"ortholog_uniquename":"YOL138C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04496","ortholog_taxonid":4932,"ortholog_uniquename":"YOL138C","reference_uniquename":"PMID:26896847"}],"product":"GATOR2-SEACAT complex WD repeat subunit Sea2","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000043":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0008270"]}},"subset_termids":["GO:0005829","GO:0006914","GO:0023052","GO:0005773"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005774":null,"GO:0005829":null,"GO:0008270":null,"GO:0016239":null,"GO:0061700":null,"GO:1904263":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04496.1"],"transcripts_by_uniquename":{"SJAG_04496.1":null},"uniprot_identifier":"B6K6Z5","uniquename":"SJAG_04496"}


id: SJAG_04497
data:
  {"cv_annotations":{"biological_process":[{"annotations":[64664],"is_not":false,"summary":null,"term":"GO:0045292"},{"annotations":[98338],"is_not":false,"summary":null,"term":"GO:0000393"},{"annotations":[76420],"is_not":false,"summary":null,"term":"GO:0000244"}],"cellular_component":[{"annotations":[76422],"is_not":false,"summary":null,"term":"GO:0071013"},{"annotations":[98332],"is_not":false,"summary":null,"term":"GO:0071014"},{"annotations":[98333],"is_not":false,"summary":null,"term":"GO:0000974"},{"annotations":[98335],"is_not":false,"summary":null,"term":"GO:0046540"},{"annotations":[76421],"is_not":false,"summary":null,"term":"GO:0005682"}],"molecular_function":[{"annotations":[98340],"is_not":false,"summary":null,"term":"GO:0004843"},{"annotations":[64660],"is_not":false,"summary":null,"term":"GO:0008237"},{"annotations":[76419],"is_not":false,"summary":null,"term":"GO:0097157"},{"annotations":[76415],"is_not":false,"summary":null,"term":"GO:0030619"},{"annotations":[76416],"is_not":false,"summary":null,"term":"GO:0030620"},{"annotations":[76417],"is_not":false,"summary":null,"term":"GO:0030623"},{"annotations":[76418],"is_not":false,"summary":null,"term":"GO:0017070"}],"mondo":[{"annotations":[86566],"is_not":false,"summary":null,"term":"MONDO:0010806"}]},"dbxrefs":["GOA:B6K6Z6","InterPro:IPR019582","InterPro:IPR012592","InterPro:IPR012984","InterPro:IPR019581","EnsemblGenomes-Tr:EEB09300","InterPro:IPR012591","EnsemblGenomes-Gn:SJAG_04497","InterPro:IPR000555","InterPro:IPR021983","InterPro:IPR037518","InterPro:IPR012337","InterPro:IPR027652","InterPro:IPR019580","InterPro:IPR042516","UniProtKB/TrEMBL:B6K6Z6"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":51,"start":1}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"atg11","uniquename":"SJAG_04502"},{"uniquename":"SJAG_04501"},{"name":"ctr1","uniquename":"SJAG_04500"},{"name":"hcs1","uniquename":"SJAG_04499"},{"name":"rng2","uniquename":"SJAG_04498"},{"name":"spp42","uniquename":"SJAG_04497"},{"name":"sea2","uniquename":"SJAG_04496"},{"name":"hxk2","uniquename":"SJAG_04495"},{"name":"mrps12a","uniquename":"SJAG_04494"},{"name":"mrpl28","uniquename":"SJAG_04493"},{"name":"rpf1","uniquename":"SJAG_04492"}],"genes_by_uniquename":{"HGNC:17340":null,"SJAG_04497":null,"SPAC4F8.12c":null,"YHR165C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"PROCN (NUC071) domain","id":"PF08083","interpro_description":"PROCN domain","interpro_id":"IPR012592","interpro_name":"PROCN","locations":[{"end":822,"start":417}],"match_end":822,"match_start":417,"name":"PROCN"},{"dbname":"PFAM","description":"PRO8NT (NUC069), PrP8 N-terminal domain","id":"PF08082","interpro_description":"PRO8NT domain","interpro_id":"IPR012591","interpro_name":"PRO8NT","locations":[{"end":227,"start":77}],"match_end":227,"match_start":77,"name":"PRO8NT"},{"dbname":"PFAM","description":"PROCT (NUC072) domain","id":"PF08084","interpro_description":"PROCT domain","interpro_id":"IPR012984","interpro_name":"PROCT","locations":[{"end":2358,"start":2237}],"match_end":2358,"match_start":2237,"name":"PROCT"},{"dbname":"PFAM","description":"RNA recognition motif of the spliceosomal PrP8","id":"PF10598","interpro_description":"RNA recognition motif, spliceosomal PrP8","interpro_id":"IPR019582","interpro_name":"RRM_spliceosomal_PrP8","locations":[{"end":1097,"start":1007}],"match_end":1097,"match_start":1007,"name":"RRM_4"},{"dbname":"PFAM","description":"U5-snRNA binding site 2 of PrP8","id":"PF10597","interpro_description":"Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding","interpro_id":"IPR019581","interpro_name":"Prp8_U5-snRNA-bd","locations":[{"end":1365,"start":1232}],"match_end":1365,"match_start":1232,"name":"U5_2-snRNA_bdg"},{"dbname":"PFAM","description":"U6-snRNA interacting domain of PrP8","id":"PF10596","interpro_description":"Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding","interpro_id":"IPR019580","interpro_name":"Prp8_U6-snRNA-bd","locations":[{"end":1622,"start":1464}],"match_end":1622,"match_start":1464,"name":"U6-snRNA_bdg"},{"dbname":"PFAM","description":"JAB1/Mov34/MPN/PAD-1 ubiquitin protease","id":"PF01398","interpro_description":"JAB1/MPN/MOV34 metalloenzyme domain","interpro_id":"IPR000555","interpro_name":"JAMM/MPN+_dom","locations":[{"end":2231,"start":2126}],"match_end":2231,"match_start":2126,"name":"JAB"},{"dbname":"PFAM","description":"PRP8 domain IV core","id":"PF12134","interpro_description":"PRP8 domain IV core","interpro_id":"IPR021983","interpro_name":"PRP8_domainIV","locations":[{"end":2010,"start":1782}],"match_end":2010,"match_start":1782,"name":"PRP8_domainIV"},{"dbname":"CDD","description":"MPN_PRP8","id":"cd08056","locations":[{"end":2343,"start":2089}],"match_end":2343,"match_start":2089,"name":"MPN_PRP8"},{"dbname":"CDD","description":"RNase_H_like_Prp8_IV","id":"cd13838","interpro_description":"PRP8 domain IV core","interpro_id":"IPR021983","interpro_name":"PRP8_domainIV","locations":[{"end":2038,"start":1788}],"match_end":2038,"match_start":1788,"name":"RNase_H_like_Prp8_IV"},{"dbname":"PROSITE_PROFILES","description":"MPN domain profile.","id":"PS50249","interpro_description":"MPN domain","interpro_id":"IPR037518","interpro_name":"MPN","locations":[{"end":2259,"start":2126}],"match_end":2259,"match_start":2126,"name":"MPN"},{"dbname":"SMART","id":"SM00232","interpro_description":"JAB1/MPN/MOV34 metalloenzyme domain","interpro_id":"IPR000555","interpro_name":"JAMM/MPN+_dom","locations":[{"end":2258,"start":2122}],"match_end":2258,"match_start":2122,"name":"pad1_6"},{"dbname":"FUNFAM","description":"Pre-mRNA-processing-splicing factor 8","id":"G3DSA:3.30.420.230:FF:000001","locations":[{"end":1943,"start":1783}],"match_end":1943,"match_start":1783},{"dbname":"FUNFAM","description":"Pre-mRNA-processing-splicing factor 8","id":"G3DSA:3.90.1570.40:FF:000001","locations":[{"end":1774,"start":1603}],"match_end":1774,"match_start":1603},{"dbname":"FUNFAM","description":"Pre-mRNA-processing-splicing factor 8","id":"G3DSA:3.40.140.10:FF:000002","locations":[{"end":2361,"start":2080}],"match_end":2361,"match_start":2080},{"dbname":"FUNFAM","description":"Pre-mRNA-processing-splicing factor 8","id":"G3DSA:1.20.80.40:FF:000001","locations":[{"end":2042,"start":1944}],"match_end":2042,"match_start":1944},{"dbname":"FUNFAM","description":"Pre-mRNA-processing-splicing factor 8","id":"G3DSA:3.30.43.40:FF:000001","locations":[{"end":1325,"start":1207}],"match_end":1325,"match_start":1207},{"dbname":"SUPERFAMILY","id":"SSF53098","interpro_description":"Ribonuclease H-like superfamily","interpro_id":"IPR012337","interpro_name":"RNaseH-like_sf","locations":[{"end":1275,"start":1018},{"end":2036,"start":1785}],"match_end":2036,"match_start":1018,"name":"Ribonuclease H-like"},{"dbname":"GENE3D","id":"G3DSA:3.30.43.40","interpro_description":"Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamily","interpro_id":"IPR042516","interpro_name":"Prp8_U5-snRNA-bd_sf","locations":[{"end":1325,"start":1207}],"match_end":1325,"match_start":1207},{"dbname":"GENE3D","id":"G3DSA:3.40.140.10","locations":[{"end":2361,"start":2080}],"match_end":2361,"match_start":2080,"name":"Cytidine Deaminase, domain 2"},{"dbname":"GENE3D","id":"G3DSA:1.20.80.40","interpro_description":"Prp8 RNase domain IV, fingers region","interpro_id":"IPR043173","interpro_name":"Prp8_domainIV_fingers","locations":[{"end":2042,"start":1944}],"match_end":2042,"match_start":1944},{"dbname":"GENE3D","id":"G3DSA:3.30.420.230","interpro_description":"Prp8 RNase domain IV, palm region","interpro_id":"IPR043172","interpro_name":"Prp8_domainIV_palm","locations":[{"end":1943,"start":1783}],"match_end":1943,"match_start":1783},{"dbname":"GENE3D","id":"G3DSA:3.90.1570.40","locations":[{"end":1774,"start":1603}],"match_end":1774,"match_start":1603},{"dbname":"PANTHER","id":"PTHR11140","interpro_description":"Pre-mRNA-processing-splicing factor 8","interpro_id":"IPR027652","interpro_name":"PRP8","locations":[{"end":2352,"start":34}],"match_end":2352,"match_start":34,"name":"PRE-MRNA SPLICING FACTOR PRP8"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":51,"start":1}],"match_end":51,"match_start":1,"name":"disorder_prediction"},{"dbname":"MOBIDB-Proline-rich","description":"consensus disorder prediction","id":"mobidb-lite-Proline-rich","locations":[{"end":29,"start":1}],"match_end":29,"match_start":1,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.3","end_pos":759903,"start_pos":752818,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":27,"start":4}},{"range":{"end":106,"start":95}},{"range":{"end":194,"start":184}},{"range":{"end":412,"start":390}},{"range":{"end":1025,"start":1009}},{"range":{"end":2068,"start":2061}}],"name":"spp42","ortholog_annotations":[{"gene_uniquename":"SJAG_04497","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:17340","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04497","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC4F8.12c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04497","ortholog_taxonid":4932,"ortholog_uniquename":"YHR165C","reference_uniquename":"PMID:29761456"}],"product":"U5 snRNP complex subunit Spp42","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0030619","GO:0097157","GO:0030620","GO:0030623","GO:0017070"],"not-binding":["GO:0004843","GO:0008237"]}},"subset_termids":["GO:0140096","GO:0016071","GO:0065003","MONDO:0005066","MONDO:0005328","GO:0005634","GO:0008233","MONDO:0004736"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000244":null,"GO:0000393":null,"GO:0000974":null,"GO:0004843":null,"GO:0005682":null,"GO:0008237":null,"GO:0017070":null,"GO:0030619":null,"GO:0030620":null,"GO:0030623":null,"GO:0045292":null,"GO:0046540":null,"GO:0071013":null,"GO:0071014":null,"GO:0097157":null,"MONDO:0010806":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04497.1"],"transcripts_by_uniquename":{"SJAG_04497.1":null},"uniprot_identifier":"B6K6Z6","uniquename":"SJAG_04497"}


id: SJAG_04498
data:
  {"alleles_by_uniquename":{"SJAG_01143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01143","name":"mid1delta","uniquename":"SJAG_01143:allele-1"}},"coiled_coil_coords":[{"range":{"end":1407,"start":1366}}],"cv_annotations":{"biological_process":[{"annotations":[98352],"is_not":false,"summary":null,"term":"GO:0071520"},{"annotations":[77783],"is_not":false,"summary":null,"term":"GO:1903479"},{"annotations":[98355],"is_not":false,"summary":null,"term":"GO:1902404"}],"cellular_component":[{"annotations":[119716],"is_not":false,"summary":null,"term":"GO:0005826"},{"annotations":[119869],"is_not":false,"summary":null,"term":"GO:1990753"},{"annotations":[98348],"is_not":false,"summary":null,"term":"GO:0071341"},{"annotations":[119870],"is_not":false,"summary":null,"term":"GO:0110085"},{"annotations":[98350],"is_not":false,"summary":null,"term":"GO:0120104"},{"annotations":[98351],"is_not":false,"summary":null,"term":"GO:0044732"}],"molecular_function":[{"annotations":[77784],"is_not":false,"summary":null,"term":"GO:0051015"},{"annotations":[77781],"is_not":false,"summary":null,"term":"GO:0005516"},{"annotations":[98356],"is_not":false,"summary":null,"term":"GO:0008093"},{"annotations":[77780],"is_not":false,"summary":null,"term":"GO:0005096"}]},"dbxrefs":["EnsemblGenomes-Gn:SJAG_04498","InterPro:IPR000593","InterPro:IPR008936","GOA:B6K6Z7","EnsemblGenomes-Tr:EEB09301","InterPro:IPR000048","InterPro:IPR001936","InterPro:IPR036872","UniProtKB/TrEMBL:B6K6Z7","InterPro:IPR001715"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":38,"start":1}},{"range":{"end":306,"start":228}}],"feature_publications":[{"reference_uniquename":"PMID:28655757","source":"canto"},{"reference_uniquename":"PMID:25866389","source":"canto"}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"ahk1","uniquename":"SJAG_04503"},{"name":"atg11","uniquename":"SJAG_04502"},{"uniquename":"SJAG_04501"},{"name":"ctr1","uniquename":"SJAG_04500"},{"name":"hcs1","uniquename":"SJAG_04499"},{"name":"rng2","uniquename":"SJAG_04498"},{"name":"spp42","uniquename":"SJAG_04497"},{"name":"sea2","uniquename":"SJAG_04496"},{"name":"hxk2","uniquename":"SJAG_04495"},{"name":"mrps12a","uniquename":"SJAG_04494"},{"name":"mrpl28","uniquename":"SJAG_04493"}],"genes_by_uniquename":{"HGNC:6110":null,"HGNC:6111":null,"SJAG_01143":null,"SJAG_04498":null,"SPAC4F8.13c":null,"YPL242C":null},"genotypes_by_uniquename":{"mid1delta":{"display_name":"mid1delta","display_uniquename":"mid1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]}]}},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"RasGAP C-terminus","id":"PF03836","interpro_description":"RasGAP protein, C-terminal","interpro_id":"IPR000593","interpro_name":"RasGAP_C","locations":[{"end":1452,"start":1315}],"match_end":1452,"match_start":1315,"name":"RasGAP_C"},{"dbname":"PFAM","description":"GTPase-activator protein for Ras-like GTPase","id":"PF00616","interpro_description":"Ras GTPase-activating domain","interpro_id":"IPR001936","interpro_name":"RasGAP_dom","locations":[{"end":1119,"start":918}],"match_end":1119,"match_start":918,"name":"RasGAP"},{"dbname":"PFAM","description":"Calponin homology (CH) domain","id":"PF00307","interpro_description":"Calponin homology domain","interpro_id":"IPR001715","interpro_name":"CH_dom","locations":[{"end":174,"start":76}],"match_end":174,"match_start":76,"name":"CH"},{"dbname":"CDD","description":"RasGAP_IQGAP_related","id":"cd12206","locations":[{"end":1258,"start":899}],"match_end":1258,"match_start":899,"name":"RasGAP_IQGAP_related"},{"dbname":"CDD","description":"CH_IQGAP","id":"cd21206","locations":[{"end":181,"start":65}],"match_end":181,"match_start":65,"name":"CH_IQGAP"},{"dbname":"PROSITE_PROFILES","description":"IQ motif profile.","id":"PS50096","locations":[{"end":429,"start":400},{"end":459,"start":434},{"end":488,"start":461},{"end":575,"start":519},{"end":635,"start":606},{"end":725,"start":696}],"match_end":725,"match_start":400,"name":"IQ"},{"dbname":"PROSITE_PROFILES","description":"Calponin homology (CH) domain profile.","id":"PS50021","interpro_description":"Calponin homology domain","interpro_id":"IPR001715","interpro_name":"CH_dom","locations":[{"end":177,"start":71}],"match_end":177,"match_start":71,"name":"CH"},{"dbname":"PROSITE_PROFILES","description":"Ras GTPase-activating proteins profile.","id":"PS50018","interpro_description":"Ras GTPase-activating domain","interpro_id":"IPR001936","interpro_name":"RasGAP_dom","locations":[{"end":1119,"start":895}],"match_end":1119,"match_start":895,"name":"RAS_GTPASE_ACTIV_2"},{"dbname":"SMART","id":"SM00033","interpro_description":"Calponin homology domain","interpro_id":"IPR001715","interpro_name":"CH_dom","locations":[{"end":173,"start":73}],"match_end":173,"match_start":73,"name":"ch_5"},{"dbname":"SMART","id":"SM00323","interpro_description":"Ras GTPase-activating domain","interpro_id":"IPR001936","interpro_name":"RasGAP_dom","locations":[{"end":1210,"start":886}],"match_end":1210,"match_start":886,"name":"RasGAP_2"},{"dbname":"SMART","id":"SM00015","interpro_description":"IQ motif, EF-hand binding site","interpro_id":"IPR000048","interpro_name":"IQ_motif_EF-hand-BS","locations":[{"end":421,"start":399},{"end":451,"start":429},{"end":480,"start":458},{"end":510,"start":488},{"end":567,"start":545},{"end":627,"start":605},{"end":717,"start":695}],"match_end":717,"match_start":399,"name":"iq_5"},{"dbname":"SUPERFAMILY","id":"SSF48350","interpro_description":"Rho GTPase activation protein","interpro_id":"IPR008936","interpro_name":"Rho_GTPase_activation_prot","locations":[{"end":987,"start":857},{"end":1216,"start":1015}],"match_end":1216,"match_start":857,"name":"GTPase activation domain, GAP"},{"dbname":"SUPERFAMILY","id":"SSF47576","interpro_description":"CH domain superfamily","interpro_id":"IPR036872","interpro_name":"CH_dom_sf","locations":[{"end":217,"start":63}],"match_end":217,"match_start":63,"name":"Calponin-homology domain, CH-domain"},{"dbname":"SUPERFAMILY","id":"SSF143885","locations":[{"end":1529,"start":1433}],"match_end":1529,"match_start":1433,"name":"RGC domain-like"},{"dbname":"GENE3D","id":"G3DSA:1.10.506.10","interpro_description":"Rho GTPase activation protein","interpro_id":"IPR008936","interpro_name":"Rho_GTPase_activation_prot","locations":[{"end":1225,"start":846}],"match_end":1225,"match_start":846},{"dbname":"GENE3D","id":"G3DSA:1.10.418.10","interpro_description":"CH domain superfamily","interpro_id":"IPR036872","interpro_name":"CH_dom_sf","locations":[{"end":209,"start":55}],"match_end":209,"match_start":55},{"dbname":"PANTHER","id":"PTHR14149","locations":[{"end":1529,"start":630}],"match_end":1529,"match_start":630,"name":"RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF"},{"dbname":"COILS","id":"Coil","locations":[{"end":1407,"start":1366}],"match_end":1407,"match_start":1366,"name":"Coil"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":38,"start":1},{"end":306,"start":228}],"match_end":306,"match_start":1,"name":"disorder_prediction"},{"dbname":"MOBIDB-Low-complexity","description":"consensus disorder prediction","id":"mobidb-lite-Low-complexity","locations":[{"end":280,"start":251},{"end":306,"start":296}],"match_end":306,"match_start":251,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polar","description":"consensus disorder prediction","id":"mobidb-lite-Polar","locations":[{"end":38,"start":20}],"match_end":38,"match_start":20,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.3","end_pos":752097,"start_pos":747505,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":267,"start":249}},{"range":{"end":308,"start":270}},{"range":{"end":485,"start":470}},{"range":{"end":776,"start":767}},{"range":{"end":1363,"start":1356}},{"range":{"end":1414,"start":1397}}],"name":"rng2","ortholog_annotations":[{"gene_uniquename":"SJAG_04498","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:6110","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04498","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:6111","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04498","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC4F8.13c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04498","ortholog_taxonid":4932,"ortholog_uniquename":"YPL242C","reference_uniquename":"PMID:29761456"}],"product":"IQGAP domain cytoskeleton scaffold protein Rng2","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:25866389":null,"PMID:28655757":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0005516","GO:0051015"],"not-binding":["GO:0005096","GO:0008093"]}},"subset_termids":["GO:0005938","GO:0070938","GO:0003924","GO:0098772","GO:0030036","GO:0000281","GO:0003779","GO:0030234","GO:0060090","GO:0015629","GO:0015630","GO:0005816"],"target_of_annotations":[{"ext_rel_display_name":"affected by mutation in","gene":"SJAG_01143","genotype_uniquename":"mid1delta","ontology_name":"fission_yeast_phenotype","reference_uniquename":"PMID:25866389","show_in_summary":true}],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005096":null,"GO:0005516":null,"GO:0005826":null,"GO:0008093":null,"GO:0044732":null,"GO:0051015":null,"GO:0051329":null,"GO:0071341":null,"GO:0071520":null,"GO:0110085":null,"GO:0120104":null,"GO:1902404":null,"GO:1903479":null,"GO:1990753":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04498.1"],"transcripts_by_uniquename":{"SJAG_04498.1":null},"uniprot_identifier":"B6K6Z7","uniquename":"SJAG_04498"}


id: SJAG_04499
data:
  {"active_sites":[{"assigned_by":"UniProtKB","range":{"end":90,"start":90}},{"assigned_by":"UniProtKB","range":{"end":122,"start":122}},{"assigned_by":"UniProtKB","range":{"end":255,"start":255}}],"binding_sites":[{"assigned_by":"UniProtKB","ligand":"CoA","range":{"end":160,"start":160}},{"assigned_by":"UniProtKB","ligand":"CoA","range":{"end":214,"start":214}},{"assigned_by":"UniProtKB","ligand":"CoA","range":{"end":260,"start":260}},{"assigned_by":"UniProtKB","ligand":"CoA","range":{"end":264,"start":264}}],"cv_annotations":{"biological_process":[{"annotations":[80302],"is_not":false,"summary":null,"term":"GO:0006084"},{"annotations":[80299],"is_not":false,"summary":null,"term":"GO:0006696"},{"annotations":[80300],"is_not":false,"summary":null,"term":"GO:0010142"}],"cellular_component":[{"annotations":[98358],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[98359],"is_not":false,"summary":null,"term":"GO:0005783"},{"annotations":[98360],"is_not":false,"summary":null,"term":"GO:0005634"}],"molecular_function":[{"annotations":[80301],"is_not":false,"summary":null,"term":"GO:0004421"}],"mondo":[{"annotations":[86326],"is_not":false,"summary":null,"term":"MONDO:0011614"}]},"dbxrefs":["InterPro:IPR013746","GOA:B6K6Z8","InterPro:IPR000590","InterPro:IPR010122","InterPro:IPR016039","UniProtKB/TrEMBL:B6K6Z8","EnsemblGenomes-Gn:SJAG_04499","InterPro:IPR013528","EnsemblGenomes-Tr:EEB09302"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"sfp47","uniquename":"SJAG_04505"},{"name":"ahk1","uniquename":"SJAG_04503"},{"name":"atg11","uniquename":"SJAG_04502"},{"uniquename":"SJAG_04501"},{"name":"ctr1","uniquename":"SJAG_04500"},{"name":"hcs1","uniquename":"SJAG_04499"},{"name":"rng2","uniquename":"SJAG_04498"},{"name":"spp42","uniquename":"SJAG_04497"},{"name":"sea2","uniquename":"SJAG_04496"},{"name":"hxk2","uniquename":"SJAG_04495"},{"name":"mrps12a","uniquename":"SJAG_04494"}],"genes_by_uniquename":{"HGNC:5007":null,"HGNC:5008":null,"SJAG_04499":null,"SPAC4F8.14c":null,"YML126C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Hydroxymethylglutaryl-coenzyme A synthase C terminal","id":"PF08540","interpro_description":"Hydroxymethylglutaryl-coenzyme A synthase, C-terminal domain","interpro_id":"IPR013746","interpro_name":"HMG_CoA_synt_C_dom","locations":[{"end":451,"start":180}],"match_end":451,"match_start":180,"name":"HMG_CoA_synt_C"},{"dbname":"PFAM","description":"Hydroxymethylglutaryl-coenzyme A synthase N terminal","id":"PF01154","interpro_description":"Hydroxymethylglutaryl-coenzyme A synthase, N-terminal","interpro_id":"IPR013528","interpro_name":"HMG_CoA_synth_N","locations":[{"end":179,"start":10}],"match_end":179,"match_start":10,"name":"HMG_CoA_synt_N"},{"dbname":"CDD","description":"init_cond_enzymes","id":"cd00827","locations":[{"end":375,"start":11}],"match_end":375,"match_start":11,"name":"init_cond_enzymes"},{"dbname":"PROSITE_PATTERNS","description":"Hydroxymethylglutaryl-coenzyme A synthase active site.","id":"PS01226","interpro_description":"Hydroxymethylglutaryl-coenzyme A synthase, active site","interpro_id":"IPR000590","interpro_name":"HMG_CoA_synt_AS","locations":[{"end":125,"start":110}],"match_end":125,"match_start":110,"name":"HMG_COA_SYNTHASE"},{"dbname":"FUNFAM","description":"3-hydroxy-3-methylglutaryl coenzyme A synthase","id":"G3DSA:3.40.47.10:FF:000008","locations":[{"end":452,"start":7}],"match_end":452,"match_start":7},{"dbname":"SUPERFAMILY","id":"SSF53901","interpro_description":"Thiolase-like","interpro_id":"IPR016039","interpro_name":"Thiolase-like","locations":[{"end":177,"start":11},{"end":270,"start":180},{"end":450,"start":306}],"match_end":450,"match_start":11,"name":"Thiolase-like"},{"dbname":"GENE3D","id":"G3DSA:3.40.47.10","interpro_description":"Thiolase-like","interpro_id":"IPR016039","interpro_name":"Thiolase-like","locations":[{"end":452,"start":8}],"match_end":452,"match_start":8},{"dbname":"PANTHER","id":"PTHR43323","locations":[{"end":452,"start":6}],"match_end":452,"match_start":6,"name":"3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE"},{"dbname":"NCBIFAM","description":"hydroxymethylglutaryl-CoA synthase","id":"TIGR01833","interpro_description":"Hydroxymethylglutaryl-CoA synthase, eukaryotic","interpro_id":"IPR010122","interpro_name":"HMG_CoA_synthase_euk","locations":[{"end":451,"start":9}],"match_end":451,"match_start":9,"name":"HMG-CoA-S_euk"}],"location":{"chromosome_name":"supercont5.3","end_pos":746294,"start_pos":744936,"strand":"forward"},"name":"hcs1","ortholog_annotations":[{"gene_uniquename":"SJAG_04499","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:5007","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04499","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:5008","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04499","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC4F8.14c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04499","ortholog_taxonid":4932,"ortholog_uniquename":"YML126C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04499","ortholog_taxonid":4932,"ortholog_uniquename":"YML126C","reference_uniquename":"PMID:26896847"}],"product":"3-hydroxy-3-methylglutaryl-CoA synthase","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0004421"]}},"subset_termids":["GO:0055086","MONDO:0002525","GO:0006790","GO:0016746","GO:0005634","GO:0005829","GO:0006629","MONDO:0005066","GO:0005783"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0004421":null,"GO:0005634":null,"GO:0005783":null,"GO:0005829":null,"GO:0006084":null,"GO:0006696":null,"GO:0010142":null,"MONDO:0011614":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04499.1"],"transcripts_by_uniquename":{"SJAG_04499.1":null},"uniprot_identifier":"B6K6Z8","uniquename":"SJAG_04499"}


id: SJAG_04500
data:
  {"coiled_coil_coords":[{"range":{"end":276,"start":256}}],"cv_annotations":{"biological_process":[{"annotations":[89180],"is_not":false,"summary":null,"term":"GO:0180035"},{"annotations":[89181],"is_not":false,"summary":null,"term":"GO:0071030"}],"cellular_component":[{"annotations":[72757],"is_not":false,"summary":null,"term":"GO:0005634"}],"mondo":[{"annotations":[86130],"is_not":false,"summary":null,"term":"MONDO:0014784"}]},"dbxrefs":["EnsemblGenomes-Tr:EEB09303","InterPro:IPR025066","UniProtKB/TrEMBL:B6K6Z9","EnsemblGenomes-Gn:SJAG_04500","GOA:B6K6Z9"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":70,"start":37}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"itr1","uniquename":"SJAG_04506"},{"name":"sfp47","uniquename":"SJAG_04505"},{"name":"ahk1","uniquename":"SJAG_04503"},{"name":"atg11","uniquename":"SJAG_04502"},{"uniquename":"SJAG_04501"},{"name":"ctr1","uniquename":"SJAG_04500"},{"name":"hcs1","uniquename":"SJAG_04499"},{"name":"rng2","uniquename":"SJAG_04498"},{"name":"spp42","uniquename":"SJAG_04497"},{"name":"sea2","uniquename":"SJAG_04496"},{"name":"hxk2","uniquename":"SJAG_04495"}],"genes_by_uniquename":{"HGNC:28033":null,"SJAG_04500":null,"SPAC140.04":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Domain of unknown function (DUF4078)","id":"PF13300","interpro_description":"Coiled-coil domain-containing protein 174-like","interpro_id":"IPR025066","interpro_name":"CCDC174-like","locations":[{"end":268,"start":191}],"match_end":268,"match_start":191,"name":"DUF4078"},{"dbname":"PANTHER","id":"PTHR15885","interpro_description":"Coiled-coil domain-containing protein 174-like","interpro_id":"IPR025066","interpro_name":"CCDC174-like","locations":[{"end":278,"start":1}],"match_end":278,"match_start":1,"name":"COILED-COIL DOMAIN-CONTAINING PROTEIN 174"},{"dbname":"COILS","id":"Coil","locations":[{"end":276,"start":256}],"match_end":276,"match_start":256,"name":"Coil"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":70,"start":37}],"match_end":70,"match_start":37,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.3","end_pos":743815,"start_pos":742955,"strand":"forward"},"name":"ctr1","ortholog_annotations":[{"gene_uniquename":"SJAG_04500","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:28033","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04500","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC140.04","reference_uniquename":"PMID:21511999"}],"product":"MTREC associated protein Ctr1","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{},"subset_termids":["MONDO:0005267","GO:0016071","GO:0005634","MONDO:0005336"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005634":null,"GO:0071030":null,"GO:0180035":null,"MONDO:0014784":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04500.1"],"transcripts_by_uniquename":{"SJAG_04500.1":null},"uniprot_identifier":"B6K6Z9","uniquename":"SJAG_04500"}


id: SJAG_04501
data:
  {"cv_annotations":{"cellular_component":[{"annotations":[100310],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[78338],"is_not":false,"summary":null,"term":"GO:0005634"}],"molecular_function":[{"annotations":[67071],"is_not":false,"summary":null,"term":"GO:0016791"}]},"dbxrefs":["UniProtKB/TrEMBL:B6K700","InterPro:IPR036412","EnsemblGenomes-Gn:SJAG_04501","InterPro:IPR011949","EnsemblGenomes-Tr:EEB09304","GOA:B6K700","InterPro:IPR006439","InterPro:IPR023214","InterPro:IPR041492"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"ppk1","uniquename":"SJAG_04507"},{"name":"itr1","uniquename":"SJAG_04506"},{"name":"sfp47","uniquename":"SJAG_04505"},{"name":"ahk1","uniquename":"SJAG_04503"},{"name":"atg11","uniquename":"SJAG_04502"},{"uniquename":"SJAG_04501"},{"name":"ctr1","uniquename":"SJAG_04500"},{"name":"hcs1","uniquename":"SJAG_04499"},{"name":"rng2","uniquename":"SJAG_04498"},{"name":"spp42","uniquename":"SJAG_04497"},{"name":"sea2","uniquename":"SJAG_04496"}],"genes_by_uniquename":{"HGNC:28171":null,"SJAG_04501":null,"SPAC7D4.05":null,"YMR130W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"haloacid dehalogenase-like hydrolase","id":"PF00702","locations":[{"end":204,"start":5}],"match_end":204,"match_start":5,"name":"Hydrolase"},{"dbname":"SUPERFAMILY","id":"SSF56784","interpro_description":"HAD-like superfamily","interpro_id":"IPR036412","interpro_name":"HAD-like_sf","locations":[{"end":211,"start":5}],"match_end":211,"match_start":5,"name":"HAD-like"},{"dbname":"GENE3D","id":"G3DSA:3.40.50.1000","interpro_description":"HAD superfamily","interpro_id":"IPR023214","interpro_name":"HAD_sf","locations":[{"end":19,"start":6},{"end":211,"start":98}],"match_end":211,"match_start":6},{"dbname":"GENE3D","id":"G3DSA:1.10.150.720","interpro_description":"HAD-superfamily hydrolase, subfamily IA, REG-2-like, capping domain superfamily","interpro_id":"IPR044924","interpro_name":"HAD-SF_hydro_IA_REG-2-like_cap","locations":[{"end":97,"start":20}],"match_end":97,"match_start":20},{"dbname":"PANTHER","id":"PTHR46191","interpro_description":"HAD-like hydrolase domain-containing protein","interpro_id":"IPR051828","interpro_name":"HAD-like_hydrolase_domain","locations":[{"end":217,"start":2}],"match_end":217,"match_start":2},{"dbname":"NCBIFAM","description":"HAD-IA family hydrolase","id":"TIGR01549","interpro_description":"HAD hydrolase, subfamily IA","interpro_id":"IPR006439","interpro_name":"HAD-SF_hydro_IA","locations":[{"end":204,"start":122}],"match_end":204,"match_start":122,"name":"HAD-SF-IA-v1"},{"dbname":"NCBIFAM","description":"HAD hydrolase, REG-2-like, family IA","id":"TIGR02252","interpro_description":"HAD-superfamily hydrolase, subfamily IA, REG-2-like","interpro_id":"IPR011949","interpro_name":"HAD-SF_hydro_IA_REG-2-like","locations":[{"end":209,"start":5}],"match_end":209,"match_start":5,"name":"DREG-2"},{"dbname":"SFLD","description":"Haloacid Dehalogenase","id":"SFLDS00003","locations":[{"end":211,"start":4}],"match_end":211,"match_start":4,"name":"Haloacid_Dehalogenase"},{"dbname":"SFLD","description":"C1.5: HAD, Beta-PGM, Phosphatase Like","id":"SFLDG01129","locations":[{"end":211,"start":4}],"match_end":211,"match_start":4,"name":"C1.5:_HAD,_Beta-PGM,_Phosphat"}],"location":{"chromosome_name":"supercont5.3","end_pos":742509,"start_pos":741706,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":140,"start":130}}],"ortholog_annotations":[{"gene_uniquename":"SJAG_04501","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:28171","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04501","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC7D4.05","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04501","ortholog_taxonid":4932,"ortholog_uniquename":"YMR130W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04501","ortholog_taxonid":4932,"ortholog_uniquename":"YMR130W","reference_uniquename":"PMID:26896847"}],"product":"HAD superfamily hydrolase, unknown role","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0016791"]}},"subset_termids":["GO:0005634","GO:0016788","GO:0005829"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005634":null,"GO:0005829":null,"GO:0016791":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04501.1"],"transcripts_by_uniquename":{"SJAG_04501.1":null},"uniprot_identifier":"B6K700","uniquename":"SJAG_04501"}


id: SJAG_04502
data:
  {"coiled_coil_coords":[{"range":{"end":265,"start":245}},{"range":{"end":499,"start":479}},{"range":{"end":600,"start":552}},{"range":{"end":724,"start":664}}],"cv_annotations":{"biological_process":[{"annotations":[80094],"is_not":false,"summary":null,"term":"GO:0000045"},{"annotations":[100303],"is_not":false,"summary":null,"term":"GO:0000423"},{"annotations":[80097],"is_not":false,"summary":null,"term":"GO:0000425"},{"annotations":[80093],"is_not":false,"summary":null,"term":"GO:0034727"},{"annotations":[69289],"is_not":false,"summary":null,"term":"GO:1903599"},{"annotations":[80099],"is_not":false,"summary":null,"term":"GO:0061709"},{"annotations":[80092],"is_not":false,"summary":null,"term":"GO:0034517"}],"cellular_component":[{"annotations":[80096],"is_not":false,"summary":null,"term":"GO:1990316"},{"annotations":[100297],"is_not":false,"summary":null,"term":"GO:0000329"},{"annotations":[100298],"is_not":false,"summary":null,"term":"GO:0005634"},{"annotations":[80091],"is_not":false,"summary":null,"term":"GO:0034045"}],"molecular_function":[{"annotations":[80098],"is_not":false,"summary":null,"term":"GO:0060090"},{"annotations":[69283],"is_not":false,"summary":null,"term":"GO:0043539"}],"mondo":[{"annotations":[86548],"is_not":false,"summary":null,"term":"MONDO:0016419"}]},"dbxrefs":["EnsemblGenomes-Tr:EEB09305","GOA:B6K701","InterPro:IPR019460","InterPro:IPR040040","EnsemblGenomes-Gn:SJAG_04502","UniProtKB/TrEMBL:B6K701"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":530,"start":511}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"pds5","uniquename":"SJAG_04508"},{"name":"ppk1","uniquename":"SJAG_04507"},{"name":"itr1","uniquename":"SJAG_04506"},{"name":"sfp47","uniquename":"SJAG_04505"},{"name":"ahk1","uniquename":"SJAG_04503"},{"name":"atg11","uniquename":"SJAG_04502"},{"uniquename":"SJAG_04501"},{"name":"ctr1","uniquename":"SJAG_04500"},{"name":"hcs1","uniquename":"SJAG_04499"},{"name":"rng2","uniquename":"SJAG_04498"},{"name":"spp42","uniquename":"SJAG_04497"}],"genes_by_uniquename":{"HGNC:15574":null,"SJAG_04502":null,"SPAC7D4.04":null,"YPR049C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Atg11 middle domain","id":"PF19697","interpro_description":"Atg11, middle domain","interpro_id":"IPR045593","interpro_name":"Atg11_middle","locations":[{"end":591,"start":523}],"match_end":591,"match_start":523,"name":"Atg11_middle"},{"dbname":"PFAM","description":"Autophagy-related protein 11","id":"PF10377","interpro_description":"Autophagy-related protein 11, C-terminal","interpro_id":"IPR019460","interpro_name":"Atg11_C","locations":[{"end":939,"start":829}],"match_end":939,"match_start":829,"name":"ATG11"},{"dbname":"PANTHER","id":"PTHR13222","interpro_description":"Autophagy-related protein 11","interpro_id":"IPR040040","interpro_name":"ATG11","locations":[{"end":435,"start":245}],"match_end":435,"match_start":245,"name":"RB1-INDUCIBLE COILED-COIL"},{"dbname":"COILS","id":"Coil","locations":[{"end":265,"start":245},{"end":499,"start":479},{"end":600,"start":552},{"end":724,"start":664}],"match_end":724,"match_start":245,"name":"Coil"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":530,"start":511}],"match_end":530,"match_start":511,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polar","description":"consensus disorder prediction","id":"mobidb-lite-Polar","locations":[{"end":527,"start":511}],"match_end":527,"match_start":511,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.3","end_pos":741436,"start_pos":738605,"strand":"forward"},"name":"atg11","ortholog_annotations":[{"gene_uniquename":"SJAG_04502","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:15574","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04502","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC7D4.04","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04502","ortholog_taxonid":4932,"ortholog_uniquename":"YPR049C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04502","ortholog_taxonid":4932,"ortholog_uniquename":"YPR049C","reference_uniquename":"PMID:26896847"}],"product":"autophagy associated protein kinase regulator Atg11","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0043539","GO:0060090"]}},"subset_termids":["MONDO:0004992","GO:0016301","GO:0000407","GO:0140096","GO:0098772","GO:0005773","GO:0006914","GO:0005634","GO:0060090","GO:0030234","GO:0004672"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000045":null,"GO:0000329":null,"GO:0000423":null,"GO:0000425":null,"GO:0005634":null,"GO:0034045":null,"GO:0034517":null,"GO:0034727":null,"GO:0043539":null,"GO:0060090":null,"GO:0061709":null,"GO:1903599":null,"GO:1990316":null,"MONDO:0016419":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04502.1"],"transcripts_by_uniquename":{"SJAG_04502.1":null},"uniprot_identifier":"B6K701","uniquename":"SJAG_04502"}


id: SJAG_04503
data:
  {"coiled_coil_coords":[{"range":{"end":489,"start":469}}],"cv_annotations":{"biological_process":[{"annotations":[100293],"is_not":false,"summary":null,"term":"GO:0000165"}],"molecular_function":[{"annotations":[100294],"is_not":false,"summary":null,"term":"GO:0005078"}]},"dbxrefs":["UniProtKB/TrEMBL:B6K702","InterPro:IPR013887","EnsemblGenomes-Gn:SJAG_04503","EnsemblGenomes-Tr:EEB09306"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":23,"start":1}},{"range":{"end":127,"start":85}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"cdc42","uniquename":"SJAG_04509"},{"name":"pds5","uniquename":"SJAG_04508"},{"name":"ppk1","uniquename":"SJAG_04507"},{"name":"itr1","uniquename":"SJAG_04506"},{"name":"sfp47","uniquename":"SJAG_04505"},{"name":"ahk1","uniquename":"SJAG_04503"},{"name":"atg11","uniquename":"SJAG_04502"},{"uniquename":"SJAG_04501"},{"name":"ctr1","uniquename":"SJAG_04500"},{"name":"hcs1","uniquename":"SJAG_04499"},{"name":"rng2","uniquename":"SJAG_04498"}],"genes_by_uniquename":{"SJAG_04503":null,"SPAC7D4.03c":null,"YDL073W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Protein of unknown function (DUF1765)","id":"PF08578","interpro_description":"Uncharacterised protein family UPF0592","interpro_id":"IPR013887","interpro_name":"UPF0592","locations":[{"end":621,"start":505}],"match_end":621,"match_start":505,"name":"DUF1765"},{"dbname":"PANTHER","id":"PTHR37988","locations":[{"end":884,"start":20}],"match_end":884,"match_start":20,"name":"UPF0592 MEMBRANE PROTEIN C7D4.03C"},{"dbname":"COILS","id":"Coil","locations":[{"end":489,"start":469}],"match_end":489,"match_start":469,"name":"Coil"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":23,"start":1},{"end":127,"start":85}],"match_end":127,"match_start":1,"name":"disorder_prediction"},{"dbname":"MOBIDB-Low-complexity","description":"consensus disorder prediction","id":"mobidb-lite-Low-complexity","locations":[{"end":115,"start":96}],"match_end":115,"match_start":96,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polar","description":"consensus disorder prediction","id":"mobidb-lite-Polar","locations":[{"end":11,"start":1}],"match_end":11,"match_start":1,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.3","end_pos":737600,"start_pos":734946,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":114,"start":87}},{"range":{"end":132,"start":121}},{"range":{"end":388,"start":377}},{"range":{"end":724,"start":716}}],"name":"ahk1","ortholog_annotations":[{"gene_uniquename":"SJAG_04503","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC7D4.03c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04503","ortholog_taxonid":4932,"ortholog_uniquename":"YDL073W","reference_uniquename":"PMID:29761456"}],"product":"MAP kinase cascade scaffold protein Ahk1","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0005078"]}},"subset_termids":["GO:0023052","GO:0060090"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000165":null,"GO:0005078":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04503.1"],"transcripts_by_uniquename":{"SJAG_04503.1":null},"uniprot_identifier":"B6K702","uniquename":"SJAG_04503"}


id: SJAG_04505
data:
  {"coiled_coil_coords":[{"range":{"end":193,"start":173}}],"cv_annotations":{"biological_process":[{"annotations":[100291],"is_not":false,"summary":null,"term":"GO:0006511"}],"cellular_component":[{"annotations":[100289],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[100290],"is_not":false,"summary":null,"term":"GO:0005768"}],"molecular_function":[{"annotations":[100292],"is_not":false,"summary":null,"term":"GO:0030414"}]},"dbxrefs":["UniProtKB/TrEMBL:B6K703","InterPro:IPR027267","EnsemblGenomes-Gn:SJAG_04505","EnsemblGenomes-Tr:EEB09307","InterPro:IPR001452","InterPro:IPR036028"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":176,"start":115}},{"range":{"end":277,"start":197}},{"range":{"end":311,"start":290}},{"range":{"end":366,"start":347}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"pss1","uniquename":"SJAG_04511"},{"name":"cdc42","uniquename":"SJAG_04509"},{"name":"pds5","uniquename":"SJAG_04508"},{"name":"ppk1","uniquename":"SJAG_04507"},{"name":"itr1","uniquename":"SJAG_04506"},{"name":"sfp47","uniquename":"SJAG_04505"},{"name":"ahk1","uniquename":"SJAG_04503"},{"name":"atg11","uniquename":"SJAG_04502"},{"uniquename":"SJAG_04501"},{"name":"ctr1","uniquename":"SJAG_04500"},{"name":"hcs1","uniquename":"SJAG_04499"}],"genes_by_uniquename":{"HGNC:17650":null,"HGNC:24699":null,"HGNC:26299":null,"SJAG_04505":null,"SPAC7D4.02c":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Variant SH3 domain","id":"PF14604","interpro_description":"SH3 domain","interpro_id":"IPR001452","interpro_name":"SH3_domain","locations":[{"end":427,"start":376}],"match_end":427,"match_start":376,"name":"SH3_9"},{"dbname":"CDD","description":"SH3","id":"cd00174","locations":[{"end":426,"start":373}],"match_end":426,"match_start":373,"name":"SH3"},{"dbname":"PROSITE_PROFILES","description":"Src homology 3 (SH3) domain profile.","id":"PS50002","interpro_description":"SH3 domain","interpro_id":"IPR001452","interpro_name":"SH3_domain","locations":[{"end":432,"start":369}],"match_end":432,"match_start":369,"name":"SH3"},{"dbname":"SMART","id":"SM00326","interpro_description":"SH3 domain","interpro_id":"IPR001452","interpro_name":"SH3_domain","locations":[{"end":431,"start":372}],"match_end":431,"match_start":372,"name":"SH3_2"},{"dbname":"PRINTS","description":"SH3 domain signature","id":"PR00452","interpro_description":"SH3 domain","interpro_id":"IPR001452","interpro_name":"SH3_domain","locations":[{"end":382,"start":372},{"end":401,"start":386},{"end":412,"start":403},{"end":430,"start":418}],"match_end":430,"match_start":372,"name":"SH3DOMAIN"},{"dbname":"SUPERFAMILY","id":"SSF50044","interpro_description":"SH3-like domain superfamily","interpro_id":"IPR036028","interpro_name":"SH3-like_dom_sf","locations":[{"end":431,"start":351}],"match_end":431,"match_start":351,"name":"SH3-domain"},{"dbname":"SUPERFAMILY","id":"SSF103657","interpro_description":"AH/BAR domain superfamily","interpro_id":"IPR027267","interpro_name":"AH/BAR_dom_sf","locations":[{"end":82,"start":4}],"match_end":82,"match_start":4,"name":"BAR/IMD domain-like"},{"dbname":"GENE3D","id":"G3DSA:1.20.1270.60","interpro_description":"AH/BAR domain superfamily","interpro_id":"IPR027267","interpro_name":"AH/BAR_dom_sf","locations":[{"end":128,"start":1}],"match_end":128,"match_start":1,"name":"Arfaptin homology (AH) domain/BAR domain"},{"dbname":"GENE3D","id":"G3DSA:2.30.30.40","locations":[{"end":431,"start":361}],"match_end":431,"match_start":361,"name":"SH3 Domains"},{"dbname":"PANTHER","id":"PTHR23065","locations":[{"end":427,"start":94}],"match_end":427,"match_start":94,"name":"PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1"},{"dbname":"COILS","id":"Coil","locations":[{"end":193,"start":173}],"match_end":193,"match_start":173,"name":"Coil"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":176,"start":115},{"end":277,"start":197},{"end":311,"start":290},{"end":366,"start":347}],"match_end":366,"match_start":115,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polar","description":"consensus disorder prediction","id":"mobidb-lite-Polar","locations":[{"end":138,"start":128},{"end":257,"start":218}],"match_end":257,"match_start":128,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polyampholyte","description":"consensus disorder prediction","id":"mobidb-lite-Polyampholyte","locations":[{"end":127,"start":118}],"match_end":127,"match_start":118,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.3","end_pos":733872,"start_pos":732571,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":324,"start":316}}],"name":"sfp47","ortholog_annotations":[{"gene_uniquename":"SJAG_04505","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:17650","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04505","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:24699","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04505","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:26299","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04505","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC7D4.02c","reference_uniquename":"PMID:21511999"}],"product":"Ubp4 interactor Sfp47","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0030414"]}},"subset_termids":["GO:0140096","GO:0098772","GO:0008233","GO:0005829","GO:0030163","GO:0031410","GO:0030234","GO:0005768"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005768":null,"GO:0005829":null,"GO:0006511":null,"GO:0030414":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04505.1"],"transcripts_by_uniquename":{"SJAG_04505.1":null},"uniprot_identifier":"B6K703","uniquename":"SJAG_04505"}


id: SJAG_04506
data:
  {"cv_annotations":{"biological_process":[{"annotations":[72443],"is_not":false,"summary":null,"term":"GO:1904679"}],"cellular_component":[{"annotations":[98365],"is_not":false,"summary":null,"term":"GO:0000329"},{"annotations":[98366],"is_not":false,"summary":null,"term":"GO:0005794"},{"annotations":[98367],"is_not":false,"summary":null,"term":"GO:0005886"}],"molecular_function":[{"annotations":[72441],"is_not":false,"summary":null,"term":"GO:0005366"}],"mondo":[{"annotations":[85536],"is_not":false,"summary":null,"term":"MONDO:0012256"},{"annotations":[85639],"is_not":false,"summary":null,"term":"MONDO:0014018"}]},"dbxrefs":["UniProtKB/TrEMBL:B6K704","InterPro:IPR005828","InterPro:IPR003663","InterPro:IPR036259","InterPro:IPR005829","EnsemblGenomes-Gn:SJAG_04506","EnsemblGenomes-Tr:EEB09308","GOA:B6K704","InterPro:IPR020846"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"tos4","uniquename":"SJAG_04512"},{"name":"pss1","uniquename":"SJAG_04511"},{"name":"cdc42","uniquename":"SJAG_04509"},{"name":"pds5","uniquename":"SJAG_04508"},{"name":"ppk1","uniquename":"SJAG_04507"},{"name":"itr1","uniquename":"SJAG_04506"},{"name":"sfp47","uniquename":"SJAG_04505"},{"name":"ahk1","uniquename":"SJAG_04503"},{"name":"atg11","uniquename":"SJAG_04502"},{"uniquename":"SJAG_04501"},{"name":"ctr1","uniquename":"SJAG_04500"}],"genes_by_uniquename":{"HGNC:17018":null,"HGNC:19714":null,"HGNC:29106":null,"SJAG_04506":null,"SPAC4F8.15":null,"YDR387C":null,"YDR497C":null,"YOL103W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Sugar (and other) transporter","id":"PF00083","interpro_description":"Major facilitator, sugar transporter-like","interpro_id":"IPR005828","interpro_name":"MFS_sugar_transport-like","locations":[{"end":545,"start":94}],"match_end":545,"match_start":94,"name":"Sugar_tr"},{"dbname":"PROSITE_PATTERNS","description":"Sugar transport proteins signature 1.","id":"PS00216","interpro_description":"Sugar transporter, conserved site","interpro_id":"IPR005829","interpro_name":"Sugar_transporter_CS","locations":[{"end":166,"start":149},{"end":409,"start":393}],"match_end":409,"match_start":149,"name":"SUGAR_TRANSPORT_1"},{"dbname":"PROSITE_PROFILES","description":"Major facilitator superfamily (MFS) profile.","id":"PS50850","interpro_description":"Major facilitator superfamily domain","interpro_id":"IPR020846","interpro_name":"MFS_dom","locations":[{"end":535,"start":93}],"match_end":535,"match_start":93,"name":"MFS"},{"dbname":"PRINTS","description":"Sugar transporter signature","id":"PR00171","interpro_description":"Sugar/inositol transporter","interpro_id":"IPR003663","interpro_name":"Sugar/inositol_transpt","locations":[{"end":111,"start":101},{"end":205,"start":186},{"end":361,"start":351},{"end":482,"start":448}],"match_end":482,"match_start":101,"name":"SUGRTRNSPORT"},{"dbname":"FUNFAM","description":"MFS myo-inositol transporter, putative","id":"G3DSA:1.20.1250.20:FF:000073","locations":[{"end":549,"start":85}],"match_end":549,"match_start":85},{"dbname":"SUPERFAMILY","id":"SSF103473","interpro_description":"MFS transporter superfamily","interpro_id":"IPR036259","interpro_name":"MFS_trans_sf","locations":[{"end":542,"start":77}],"match_end":542,"match_start":77,"name":"MFS general substrate transporter"},{"dbname":"GENE3D","id":"G3DSA:1.20.1250.20","interpro_description":"MFS transporter superfamily","interpro_id":"IPR036259","interpro_name":"MFS_trans_sf","locations":[{"end":548,"start":82}],"match_end":548,"match_start":82,"name":"MFS general substrate transporter like domains"},{"dbname":"PANTHER","id":"PTHR48020","interpro_description":"Myo-inositol Transporter","interpro_id":"IPR050814","interpro_name":"Myo-inositol_Transporter","locations":[{"end":570,"start":71}],"match_end":570,"match_start":71,"name":"PROTON MYO-INOSITOL COTRANSPORTER"},{"dbname":"NCBIFAM","description":"sugar porter family MFS transporter","id":"TIGR00879","interpro_description":"Sugar/inositol transporter","interpro_id":"IPR003663","interpro_name":"Sugar/inositol_transpt","locations":[{"end":542,"start":84}],"match_end":542,"match_start":84,"name":"SP"}],"location":{"chromosome_name":"supercont5.3","end_pos":731763,"start_pos":730021,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":174,"start":160}},{"range":{"end":406,"start":398}},{"range":{"end":579,"start":567}}],"name":"itr1","ortholog_annotations":[{"gene_uniquename":"SJAG_04506","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:17018","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04506","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:19714","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04506","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:29106","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04506","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC4F8.15","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04506","ortholog_taxonid":4932,"ortholog_uniquename":"YDR387C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04506","ortholog_taxonid":4932,"ortholog_uniquename":"YDR497C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04506","ortholog_taxonid":4932,"ortholog_uniquename":"YDR497C","reference_uniquename":"PMID:26896847"},{"gene_uniquename":"SJAG_04506","ortholog_taxonid":4932,"ortholog_uniquename":"YOL103W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04506","ortholog_taxonid":4932,"ortholog_uniquename":"YOL103W","reference_uniquename":"PMID:26896847"}],"product":"myo-inositol transmembrane transporter Itr1","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0005366"]}},"subset_termids":["MONDO:0005559","GO:0005773","GO:0005886","GO:0022857","GO:0005794","GO:0055085"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000329":null,"GO:0005366":null,"GO:0005794":null,"GO:0005886":null,"GO:1904679":null,"MONDO:0012256":null,"MONDO:0014018":null},"tm_domain_coords":[{"assigned_by":"TMHMM","range":{"end":111,"start":89}},{"assigned_by":"TMHMM","range":{"end":153,"start":134}},{"assigned_by":"TMHMM","range":{"end":182,"start":160}},{"assigned_by":"TMHMM","range":{"end":208,"start":186}},{"assigned_by":"TMHMM","range":{"end":237,"start":215}},{"assigned_by":"TMHMM","range":{"end":269,"start":247}},{"assigned_by":"TMHMM","range":{"end":360,"start":338}},{"assigned_by":"TMHMM","range":{"end":397,"start":375}},{"assigned_by":"TMHMM","range":{"end":426,"start":404}},{"assigned_by":"TMHMM","range":{"end":463,"start":441}},{"assigned_by":"TMHMM","range":{"end":502,"start":480}},{"assigned_by":"TMHMM","range":{"end":529,"start":507}}],"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04506.1"],"transcripts_by_uniquename":{"SJAG_04506.1":null},"uniprot_identifier":"B6K704","uniquename":"SJAG_04506"}


id: SJAG_04507
data:
  {"binding_sites":[{"assigned_by":"UniProtKB","ligand":"ATP","range":{"end":392,"start":392}}],"cv_annotations":{"biological_process":[{"annotations":[77883],"is_not":false,"summary":null,"term":"GO:0035556"}],"cellular_component":[{"annotations":[88200],"is_not":false,"summary":null,"term":"GO:0005938"}],"molecular_function":[{"annotations":[66467],"is_not":false,"summary":null,"term":"GO:0005524"},{"annotations":[77881],"is_not":false,"summary":null,"term":"GO:0004674"}]},"dbxrefs":["EnsemblGenomes-Tr:EEB09309","InterPro:IPR000719","InterPro:IPR017441","EnsemblGenomes-Gn:SJAG_04507","UniProtKB/TrEMBL:B6K705","InterPro:IPR008271","GOA:B6K705","InterPro:IPR011009"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":40,"start":1}},{"range":{"end":110,"start":56}},{"range":{"end":206,"start":175}},{"range":{"end":780,"start":761}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"bos1","uniquename":"SJAG_04513"},{"name":"tos4","uniquename":"SJAG_04512"},{"name":"pss1","uniquename":"SJAG_04511"},{"name":"cdc42","uniquename":"SJAG_04509"},{"name":"pds5","uniquename":"SJAG_04508"},{"name":"ppk1","uniquename":"SJAG_04507"},{"name":"itr1","uniquename":"SJAG_04506"},{"name":"sfp47","uniquename":"SJAG_04505"},{"name":"ahk1","uniquename":"SJAG_04503"},{"name":"atg11","uniquename":"SJAG_04502"},{"uniquename":"SJAG_04501"}],"genes_by_uniquename":{"SJAG_04507":null,"SPAC110.01":null,"YOR233W":null,"YPL141C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Protein kinase domain","id":"PF00069","interpro_description":"Protein kinase domain","interpro_id":"IPR000719","interpro_name":"Prot_kinase_dom","locations":[{"end":638,"start":355}],"match_end":638,"match_start":355,"name":"Pkinase"},{"dbname":"PROSITE_PATTERNS","description":"Protein kinases ATP-binding region signature.","id":"PS00107","interpro_description":"Protein kinase, ATP binding site","interpro_id":"IPR017441","interpro_name":"Protein_kinase_ATP_BS","locations":[{"end":392,"start":361}],"match_end":392,"match_start":361,"name":"PROTEIN_KINASE_ATP"},{"dbname":"PROSITE_PATTERNS","description":"Serine/Threonine protein kinases active-site signature.","id":"PS00108","interpro_description":"Serine/threonine-protein kinase, active site","interpro_id":"IPR008271","interpro_name":"Ser/Thr_kinase_AS","locations":[{"end":494,"start":482}],"match_end":494,"match_start":482,"name":"PROTEIN_KINASE_ST"},{"dbname":"PROSITE_PROFILES","description":"Protein kinase domain profile.","id":"PS50011","interpro_description":"Protein kinase domain","interpro_id":"IPR000719","interpro_name":"Prot_kinase_dom","locations":[{"end":638,"start":355}],"match_end":638,"match_start":355,"name":"PROTEIN_KINASE_DOM"},{"dbname":"SMART","id":"SM00220","interpro_description":"Protein kinase domain","interpro_id":"IPR000719","interpro_name":"Prot_kinase_dom","locations":[{"end":638,"start":355}],"match_end":638,"match_start":355,"name":"serkin_6"},{"dbname":"FUNFAM","description":"Maternal embryonic leucine zipper kinase","id":"G3DSA:1.10.510.10:FF:000571","locations":[{"end":677,"start":350}],"match_end":677,"match_start":350},{"dbname":"SUPERFAMILY","id":"SSF56112","interpro_description":"Protein kinase-like domain superfamily","interpro_id":"IPR011009","interpro_name":"Kinase-like_dom_sf","locations":[{"end":692,"start":351}],"match_end":692,"match_start":351,"name":"Protein kinase-like (PK-like)"},{"dbname":"GENE3D","id":"G3DSA:1.10.510.10","locations":[{"end":691,"start":348}],"match_end":691,"match_start":348,"name":"Transferase(Phosphotransferase) domain 1"},{"dbname":"PANTHER","id":"PTHR43895","locations":[{"end":724,"start":350}],"match_end":724,"match_start":350,"name":"CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":40,"start":1},{"end":110,"start":56},{"end":206,"start":175},{"end":780,"start":761}],"match_end":780,"match_start":1,"name":"disorder_prediction"},{"dbname":"MOBIDB-Low-complexity","description":"consensus disorder prediction","id":"mobidb-lite-Low-complexity","locations":[{"end":75,"start":65}],"match_end":75,"match_start":65,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polar","description":"consensus disorder prediction","id":"mobidb-lite-Polar","locations":[{"end":13,"start":1},{"end":110,"start":89},{"end":206,"start":182}],"match_end":206,"match_start":1,"name":"disorder_prediction"},{"dbname":"MOBIDB-Positive-Polyelectrolyte","description":"consensus disorder prediction","id":"mobidb-lite-Positive-Polyelectrolyte","locations":[{"end":780,"start":769}],"match_end":780,"match_start":769,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.3","end_pos":727743,"start_pos":725209,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":75,"start":64}},{"range":{"end":238,"start":211}},{"range":{"end":324,"start":313}},{"range":{"end":773,"start":767}}],"name":"ppk1","ortholog_annotations":[{"gene_uniquename":"SJAG_04507","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC110.01","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04507","ortholog_taxonid":4932,"ortholog_uniquename":"YOR233W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04507","ortholog_taxonid":4932,"ortholog_uniquename":"YPL141C","reference_uniquename":"PMID:29761456"}],"product":"serine/threonine protein kinase Ppk1","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0005524"],"not-binding":["GO:0004674"]}},"subset_termids":["GO:0005938","GO:0016301","GO:0004672","GO:0140096","GO:0023052"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0004674":null,"GO:0005524":null,"GO:0005938":null,"GO:0035556":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04507.1"],"transcripts_by_uniquename":{"SJAG_04507.1":null},"uniprot_identifier":"B6K705","uniquename":"SJAG_04507"}


id: SJAG_04508
data:
  {"cv_annotations":{"biological_process":[{"annotations":[88210],"is_not":false,"summary":null,"term":"GO:0051456"},{"annotations":[57833],"is_not":false,"summary":null,"term":"GO:0006325"},{"annotations":[70873],"is_not":false,"summary":null,"term":"GO:0006281"},{"annotations":[70872],"is_not":false,"summary":null,"term":"GO:0007064"}],"cellular_component":[{"annotations":[88204],"is_not":false,"summary":null,"term":"GO:0099115"},{"annotations":[88205],"is_not":false,"summary":null,"term":"GO:0031934"},{"annotations":[88206],"is_not":false,"summary":null,"term":"GO:0000228"},{"annotations":[88208],"is_not":false,"summary":null,"term":"GO:0005721"},{"annotations":[88209],"is_not":false,"summary":null,"term":"GO:0090695"}],"molecular_function":[{"annotations":[88213],"is_not":false,"summary":null,"term":"GO:0140463"},{"annotations":[88214],"is_not":false,"summary":null,"term":"GO:0140670"},{"annotations":[88215],"is_not":false,"summary":null,"term":"GO:0003677"}]},"dbxrefs":["InterPro:IPR016024","EnsemblGenomes-Gn:SJAG_04508","GOA:B6K706","InterPro:IPR011989","InterPro:IPR039776","UniProtKB/TrEMBL:B6K706","EnsemblGenomes-Tr:EEB09310"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":1213,"start":1118}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"oma1","uniquename":"SJAG_04514"},{"name":"bos1","uniquename":"SJAG_04513"},{"name":"tos4","uniquename":"SJAG_04512"},{"name":"pss1","uniquename":"SJAG_04511"},{"name":"cdc42","uniquename":"SJAG_04509"},{"name":"pds5","uniquename":"SJAG_04508"},{"name":"ppk1","uniquename":"SJAG_04507"},{"name":"itr1","uniquename":"SJAG_04506"},{"name":"sfp47","uniquename":"SJAG_04505"},{"name":"ahk1","uniquename":"SJAG_04503"},{"name":"atg11","uniquename":"SJAG_04502"}],"genes_by_uniquename":{"HGNC:20418":null,"HGNC:29088":null,"SJAG_04508":null,"SPAC110.02":null,"YMR076C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Sister chromatid cohesion protein PDS5 protein","id":"PF20168","locations":[{"end":1081,"start":27}],"match_end":1081,"match_start":27,"name":"PDS5"},{"dbname":"CDD","description":"PDS5","id":"cd19953","locations":[{"end":663,"start":40}],"match_end":663,"match_start":40,"name":"PDS5"},{"dbname":"SUPERFAMILY","id":"SSF48371","interpro_description":"Armadillo-type fold","interpro_id":"IPR016024","interpro_name":"ARM-type_fold","locations":[{"end":189,"start":64},{"end":440,"start":240},{"end":717,"start":596},{"end":931,"start":815}],"match_end":931,"match_start":64,"name":"ARM repeat"},{"dbname":"GENE3D","id":"G3DSA:1.25.10.10","interpro_description":"Armadillo-like helical","interpro_id":"IPR011989","interpro_name":"ARM-like","locations":[{"end":247,"start":14},{"end":560,"start":284}],"match_end":560,"match_start":14},{"dbname":"PANTHER","id":"PTHR12663","interpro_description":"Sister chromatid cohesion protein Pds5","interpro_id":"IPR039776","interpro_name":"Pds5","locations":[{"end":1175,"start":657}],"match_end":1175,"match_start":657,"name":"ANDROGEN INDUCED INHIBITOR OF PROLIFERATION  AS3  / PDS5-RELATED"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":1213,"start":1118}],"match_end":1213,"match_start":1118,"name":"disorder_prediction"},{"dbname":"MOBIDB-Negative-Polyelectrolyte","description":"consensus disorder prediction","id":"mobidb-lite-Negative-Polyelectrolyte","locations":[{"end":1213,"start":1189}],"match_end":1213,"match_start":1189,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polar","description":"consensus disorder prediction","id":"mobidb-lite-Polar","locations":[{"end":1172,"start":1159}],"match_end":1172,"match_start":1159,"name":"disorder_prediction"},{"dbname":"MOBIDB-Positive-Polyelectrolyte","description":"consensus disorder prediction","id":"mobidb-lite-Positive-Polyelectrolyte","locations":[{"end":1127,"start":1118},{"end":1158,"start":1134}],"match_end":1158,"match_start":1118,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.3","end_pos":724199,"start_pos":720516,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":39,"start":28}},{"range":{"end":1151,"start":1130}},{"range":{"end":1212,"start":1185}}],"name":"pds5","ortholog_annotations":[{"gene_uniquename":"SJAG_04508","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:20418","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04508","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:29088","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04508","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC110.02","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04508","ortholog_taxonid":4932,"ortholog_uniquename":"YMR076C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04508","ortholog_taxonid":4932,"ortholog_uniquename":"YMR076C","reference_uniquename":"PMID:26896847"}],"product":"mitotic and meiotic cohesin unloading complex subunit Pds5","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0003677"],"not-binding":["GO:0140463","GO:0140670"]}},"subset_termids":["GO:0140013","GO:0140097","GO:0060090","GO:0005694","GO:0006281","GO:0005634","GO:0006325"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000228":null,"GO:0003677":null,"GO:0005721":null,"GO:0006281":null,"GO:0006325":null,"GO:0007064":null,"GO:0031934":null,"GO:0051456":null,"GO:0090695":null,"GO:0099115":null,"GO:0140463":null,"GO:0140670":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04508.1"],"transcripts_by_uniquename":{"SJAG_04508.1":null},"uniprot_identifier":"B6K706","uniquename":"SJAG_04508"}


id: SJAG_04509
data:
  {"cv_annotations":{"biological_process":[{"annotations":[88233],"is_not":false,"summary":null,"term":"GO:0042815"},{"annotations":[80544],"is_not":false,"summary":null,"term":"GO:0006897"},{"annotations":[80546],"is_not":false,"summary":null,"term":"GO:0030010"},{"annotations":[88236],"is_not":false,"summary":null,"term":"GO:0101026"},{"annotations":[88237],"is_not":false,"summary":null,"term":"GO:1902917"},{"annotations":[88238],"is_not":false,"summary":null,"term":"GO:0032951"},{"annotations":[88239],"is_not":false,"summary":null,"term":"GO:0032955"},{"annotations":[88240],"is_not":false,"summary":null,"term":"GO:2001135"},{"annotations":[88242],"is_not":false,"summary":null,"term":"GO:2000769"},{"annotations":[88243],"is_not":false,"summary":null,"term":"GO:0017157"},{"annotations":[88244],"is_not":false,"summary":null,"term":"GO:0033157"},{"annotations":[80545],"is_not":false,"summary":null,"term":"GO:0007165"}],"cellular_component":[{"annotations":[88216],"is_not":false,"summary":null,"term":"GO:0071521"},{"annotations":[88219],"is_not":false,"summary":null,"term":"GO:1902716"},{"annotations":[88222],"is_not":false,"summary":null,"term":"GO:0032154"},{"annotations":[88223],"is_not":false,"summary":null,"term":"GO:0090726"},{"annotations":[88224],"is_not":false,"summary":null,"term":"GO:0009898"},{"annotations":[88226],"is_not":false,"summary":null,"term":"GO:0070382"},{"annotations":[88227],"is_not":false,"summary":null,"term":"GO:0097575"},{"annotations":[88228],"is_not":false,"summary":null,"term":"GO:0043332"},{"annotations":[88229],"is_not":false,"summary":null,"term":"GO:0110085"},{"annotations":[88231],"is_not":false,"summary":null,"term":"GO:0031520"}],"molecular_function":[{"annotations":[69872],"is_not":false,"summary":null,"term":"GO:0003925"},{"annotations":[80541],"is_not":false,"summary":null,"term":"GO:0005525"},{"annotations":[88249],"is_not":false,"summary":null,"term":"GO:0043539"},{"annotations":[88250],"is_not":false,"summary":null,"term":"GO:0035591"}],"mondo":[{"annotations":[86256],"is_not":false,"summary":null,"term":"MONDO:0014757"}]},"dbxrefs":["InterPro:IPR037874","InterPro:IPR001806","EnsemblGenomes-Tr:EEB09311","UniProtKB/TrEMBL:B6K707","InterPro:IPR003578","InterPro:IPR005225","GOA:B6K707","InterPro:IPR027417","EnsemblGenomes-Gn:SJAG_04509"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"uniquename":"SJAG_04515"},{"name":"oma1","uniquename":"SJAG_04514"},{"name":"bos1","uniquename":"SJAG_04513"},{"name":"tos4","uniquename":"SJAG_04512"},{"name":"pss1","uniquename":"SJAG_04511"},{"name":"cdc42","uniquename":"SJAG_04509"},{"name":"pds5","uniquename":"SJAG_04508"},{"name":"ppk1","uniquename":"SJAG_04507"},{"name":"itr1","uniquename":"SJAG_04506"},{"name":"sfp47","uniquename":"SJAG_04505"},{"name":"ahk1","uniquename":"SJAG_04503"}],"genes_by_uniquename":{"HGNC:1736":null,"SJAG_04509":null,"SPAC110.03":null,"YLR229C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Ras family","id":"PF00071","interpro_description":"Small GTPase","interpro_id":"IPR001806","interpro_name":"Small_GTPase","locations":[{"end":174,"start":5}],"match_end":174,"match_start":5,"name":"Ras"},{"dbname":"CDD","description":"Cdc42","id":"cd01874","interpro_description":"Cdc42","interpro_id":"IPR037874","interpro_name":"Cdc42","locations":[{"end":177,"start":3}],"match_end":177,"match_start":3,"name":"Cdc42"},{"dbname":"PROSITE_PROFILES","description":"small GTPase Ras family profile.","id":"PS51421","interpro_description":"Small GTPase","interpro_id":"IPR001806","interpro_name":"Small_GTPase","locations":[{"end":192,"start":1}],"match_end":192,"match_start":1,"name":"RAS"},{"dbname":"PROSITE_PROFILES","description":"small GTPase Rho family profile.","id":"PS51420","locations":[{"end":176,"start":1}],"match_end":176,"match_start":1,"name":"RHO"},{"dbname":"PROSITE_PROFILES","description":"small GTPase Rab1 family profile.","id":"PS51419","locations":[{"end":192,"start":1}],"match_end":192,"match_start":1,"name":"RAB"},{"dbname":"SMART","id":"SM00175","locations":[{"end":179,"start":4}],"match_end":179,"match_start":4,"name":"rab_sub_5"},{"dbname":"SMART","id":"SM00174","interpro_description":"Small GTPase","interpro_id":"IPR001806","interpro_name":"Small_GTPase","locations":[{"end":179,"start":6}],"match_end":179,"match_start":6,"name":"rho_sub_3"},{"dbname":"SMART","id":"SM00173","locations":[{"end":179,"start":1}],"match_end":179,"match_start":1,"name":"ras_sub_4"},{"dbname":"PRINTS","description":"Transforming protein P21 ras signature","id":"PR00449","locations":[{"end":25,"start":4},{"end":66,"start":27},{"end":119,"start":106},{"end":176,"start":154}],"match_end":176,"match_start":4,"name":"RASTRNSFRMNG"},{"dbname":"FUNFAM","description":"Cell division control protein 42","id":"G3DSA:3.40.50.300:FF:000236","locations":[{"end":189,"start":1}],"match_end":189,"match_start":1},{"dbname":"SUPERFAMILY","id":"SSF52540","interpro_description":"P-loop containing nucleoside triphosphate hydrolase","interpro_id":"IPR027417","interpro_name":"P-loop_NTPase","locations":[{"end":173,"start":3}],"match_end":173,"match_start":3,"name":"P-loop containing nucleoside triphosphate hydrolases"},{"dbname":"GENE3D","id":"G3DSA:3.40.50.300","interpro_description":"P-loop containing nucleoside triphosphate hydrolase","interpro_id":"IPR027417","interpro_name":"P-loop_NTPase","locations":[{"end":192,"start":1}],"match_end":192,"match_start":1},{"dbname":"PANTHER","id":"PTHR24072","interpro_description":"Small GTPase Rho","interpro_id":"IPR003578","interpro_name":"Small_GTPase_Rho","locations":[{"end":190,"start":4}],"match_end":190,"match_start":4,"name":"RHO FAMILY GTPASE"},{"dbname":"NCBIFAM","description":"small GTP-binding protein domain","id":"TIGR00231","interpro_description":"Small GTP-binding domain","interpro_id":"IPR005225","interpro_name":"Small_GTP-bd","locations":[{"end":157,"start":2}],"match_end":157,"match_start":2,"name":"small_GTP"}],"location":{"chromosome_name":"supercont5.3","end_pos":720193,"start_pos":719330,"strand":"reverse"},"name":"cdc42","ortholog_annotations":[{"gene_uniquename":"SJAG_04509","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:1736","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04509","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC110.03","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04509","ortholog_taxonid":4932,"ortholog_uniquename":"YLR229C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04509","ortholog_taxonid":4932,"ortholog_uniquename":"YLR229C","reference_uniquename":"PMID:26896847"}],"product":"Rho family GTPase Cdc42","references_by_uniquename":{"GO_REF:0000003":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0005525"],"not-binding":["GO:0043539","GO:0003925","GO:0035591"]}},"subset_termids":["GO:0005975","GO:0004672","GO:0070938","GO:0023052","GO:0030234","GO:0098772","GO:0016301","GO:0031410","GO:0061024","GO:0005938","GO:0140096","GO:0015629","GO:0007163","GO:0003924","GO:0060090","MONDO:0005570","GO:0016192","GO:0005886"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0003925":null,"GO:0005525":null,"GO:0006897":null,"GO:0007165":null,"GO:0009898":null,"GO:0017157":null,"GO:0030010":null,"GO:0031520":null,"GO:0032154":null,"GO:0032951":null,"GO:0032955":null,"GO:0033157":null,"GO:0035591":null,"GO:0042815":null,"GO:0043332":null,"GO:0043539":null,"GO:0070382":null,"GO:0071521":null,"GO:0090726":null,"GO:0097575":null,"GO:0101026":null,"GO:0110085":null,"GO:1902716":null,"GO:1902917":null,"GO:2000769":null,"GO:2001135":null,"MONDO:0014757":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04509.1"],"transcripts_by_uniquename":{"SJAG_04509.1":null},"uniprot_identifier":"B6K707","uniquename":"SJAG_04509"}


id: SJAG_04511
data:
  {"coiled_coil_coords":[{"range":{"end":690,"start":652}}],"cv_annotations":{"biological_process":[{"annotations":[88253],"is_not":false,"summary":null,"term":"GO:0042026"}],"cellular_component":[{"annotations":[76873],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[76872],"is_not":false,"summary":null,"term":"GO:0005634"}],"molecular_function":[{"annotations":[76871],"is_not":false,"summary":null,"term":"GO:0000774"},{"annotations":[88256],"is_not":false,"summary":null,"term":"GO:0016887"},{"annotations":[65188],"is_not":false,"summary":null,"term":"GO:0140662"}]},"dbxrefs":["GOA:B6K708","InterPro:IPR018181","InterPro:IPR029047","EnsemblGenomes-Tr:EEB09312","UniProtKB/TrEMBL:B6K708","EnsemblGenomes-Gn:SJAG_04511","InterPro:IPR029048","InterPro:IPR013126"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":527,"start":508}},{"range":{"end":727,"start":670}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"pcs2","uniquename":"SJAG_04516"},{"uniquename":"SJAG_04515"},{"name":"oma1","uniquename":"SJAG_04514"},{"name":"bos1","uniquename":"SJAG_04513"},{"name":"tos4","uniquename":"SJAG_04512"},{"name":"pss1","uniquename":"SJAG_04511"},{"name":"cdc42","uniquename":"SJAG_04509"},{"name":"pds5","uniquename":"SJAG_04508"},{"name":"ppk1","uniquename":"SJAG_04507"},{"name":"itr1","uniquename":"SJAG_04506"},{"name":"sfp47","uniquename":"SJAG_04505"}],"genes_by_uniquename":{"HGNC:16969":null,"HGNC:17041":null,"HGNC:5237":null,"SJAG_04511":null,"SPAC110.04c":null,"YBR169C":null,"YPL106C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Hsp70 protein","id":"PF00012","interpro_description":"Heat shock protein 70 family","interpro_id":"IPR013126","interpro_name":"Hsp_70_fam","locations":[{"end":651,"start":7}],"match_end":651,"match_start":7,"name":"HSP70"},{"dbname":"CDD","description":"ASKHA_NBD_HSP70_ScSse","id":"cd24094","locations":[{"end":392,"start":8}],"match_end":392,"match_start":8,"name":"ASKHA_NBD_HSP70_ScSse"},{"dbname":"PROSITE_PATTERNS","description":"Heat shock hsp70 proteins family signature 3.","id":"PS01036","interpro_description":"Heat shock protein 70, conserved site","interpro_id":"IPR018181","interpro_name":"Heat_shock_70_CS","locations":[{"end":354,"start":340}],"match_end":354,"match_start":340,"name":"HSP70_3"},{"dbname":"PRINTS","description":"70kDa heat shock protein signature","id":"PR00301","locations":[{"end":19,"start":6},{"end":46,"start":34},{"end":64,"start":56},{"end":164,"start":144},{"end":353,"start":337},{"end":388,"start":368}],"match_end":388,"match_start":6,"name":"HEATSHOCK70"},{"dbname":"FUNFAM","description":"Heat shock 70 kDa protein 4","id":"G3DSA:3.30.420.40:FF:000171","locations":[{"end":93,"start":5},{"end":232,"start":103}],"match_end":232,"match_start":5},{"dbname":"FUNFAM","description":"Heat shock 70 kDa protein 4","id":"G3DSA:3.30.30.30:FF:000002","locations":[{"end":117,"start":42}],"match_end":117,"match_start":42},{"dbname":"FUNFAM","description":"Heat shock 70 kDa protein 4","id":"G3DSA:1.20.1270.10:FF:000002","locations":[{"end":663,"start":551}],"match_end":663,"match_start":551},{"dbname":"FUNFAM","description":"Heat shock protein hsp88","id":"G3DSA:2.60.34.10:FF:000011","locations":[{"end":549,"start":392}],"match_end":549,"match_start":392},{"dbname":"FUNFAM","description":"Heat shock 70 kDa protein 4","id":"G3DSA:3.90.640.10:FF:000004","locations":[{"end":318,"start":235}],"match_end":318,"match_start":235},{"dbname":"SUPERFAMILY","id":"SSF100920","interpro_description":"Heat shock protein 70kD, peptide-binding domain superfamily","interpro_id":"IPR029047","interpro_name":"HSP70_peptide-bd_sf","locations":[{"end":500,"start":389},{"end":584,"start":533}],"match_end":584,"match_start":389,"name":"Heat shock protein 70kD (HSP70), peptide-binding domain"},{"dbname":"SUPERFAMILY","id":"SSF100934","interpro_description":"Heat shock protein 70kD, C-terminal domain superfamily","interpro_id":"IPR029048","interpro_name":"HSP70_C_sf","locations":[{"end":651,"start":555}],"match_end":651,"match_start":555,"name":"Heat shock protein 70kD (HSP70), C-terminal subdomain"},{"dbname":"SUPERFAMILY","id":"SSF53067","interpro_description":"ATPase, nucleotide binding domain","interpro_id":"IPR043129","interpro_name":"ATPase_NBD","locations":[{"end":189,"start":6},{"end":385,"start":198}],"match_end":385,"match_start":6,"name":"Actin-like ATPase domain"},{"dbname":"GENE3D","id":"G3DSA:3.30.30.30","locations":[{"end":117,"start":42}],"match_end":117,"match_start":42},{"dbname":"GENE3D","id":"G3DSA:2.60.34.10","interpro_description":"Heat shock protein 70kD, peptide-binding domain superfamily","interpro_id":"IPR029047","interpro_name":"HSP70_peptide-bd_sf","locations":[{"end":550,"start":392}],"match_end":550,"match_start":392,"name":"Substrate Binding Domain Of DNAk; Chain A, domain 1"},{"dbname":"GENE3D","id":"G3DSA:3.90.640.10","locations":[{"end":318,"start":235}],"match_end":318,"match_start":235,"name":"Actin; Chain A, domain 4"},{"dbname":"GENE3D","id":"G3DSA:3.30.420.40","locations":[{"end":41,"start":9},{"end":234,"start":118},{"end":379,"start":319}],"match_end":379,"match_start":9},{"dbname":"GENE3D","id":"G3DSA:1.20.1270.10","interpro_description":"Heat shock protein 70kD, C-terminal domain superfamily","interpro_id":"IPR029048","interpro_name":"HSP70_C_sf","locations":[{"end":663,"start":551}],"match_end":663,"match_start":551},{"dbname":"PANTHER","id":"PTHR45639","interpro_description":"Heat shock protein 70 family","interpro_id":"IPR013126","interpro_name":"Hsp_70_fam","locations":[{"end":684,"start":6}],"match_end":684,"match_start":6,"name":"HSC70CB, ISOFORM G-RELATED"},{"dbname":"COILS","id":"Coil","locations":[{"end":690,"start":652}],"match_end":690,"match_start":652,"name":"Coil"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":527,"start":508},{"end":727,"start":670}],"match_end":727,"match_start":508,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polyampholyte","description":"consensus disorder prediction","id":"mobidb-lite-Polyampholyte","locations":[{"end":688,"start":670}],"match_end":688,"match_start":670,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.3","end_pos":717408,"start_pos":715225,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":521,"start":495}},{"range":{"end":538,"start":527}},{"range":{"end":690,"start":667}},{"range":{"end":709,"start":704}}],"name":"pss1","ortholog_annotations":[{"gene_uniquename":"SJAG_04511","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:16969","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04511","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:17041","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04511","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:5237","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04511","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC110.04c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04511","ortholog_taxonid":4932,"ortholog_uniquename":"YBR169C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04511","ortholog_taxonid":4932,"ortholog_uniquename":"YBR169C","reference_uniquename":"PMID:26896847"},{"gene_uniquename":"SJAG_04511","ortholog_taxonid":4932,"ortholog_uniquename":"YPL106C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04511","ortholog_taxonid":4932,"ortholog_uniquename":"YPL106C","reference_uniquename":"PMID:26896847"}],"product":"heat shock protein Pss1","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0000774","GO:0016887","GO:0140662"]}},"subset_termids":["GO:0098772","GO:0006457","GO:0005829","GO:0016887","GO:0005634","GO:0051604"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000774":null,"GO:0005634":null,"GO:0005829":null,"GO:0016887":null,"GO:0042026":null,"GO:0140662":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04511.1"],"transcripts_by_uniquename":{"SJAG_04511.1":null},"uniprot_identifier":"B6K708","uniquename":"SJAG_04511"}


id: SJAG_04512
data:
  {"cv_annotations":{"biological_process":[{"annotations":[101389],"is_not":false,"summary":null,"term":"GO:0006974"},{"annotations":[101390],"is_not":false,"summary":null,"term":"GO:0045892"}],"cellular_component":[{"annotations":[101387],"is_not":false,"summary":null,"term":"GO:0000785"},{"annotations":[101388],"is_not":false,"summary":null,"term":"GO:0005634"}],"molecular_function":[{"annotations":[101391],"is_not":false,"summary":null,"term":"GO:0003682"}]},"dbxrefs":["InterPro:IPR008984","InterPro:IPR000253","UniProtKB/TrEMBL:B6K709","EnsemblGenomes-Tr:EEB09313","GOA:B6K709","EnsemblGenomes-Gn:SJAG_04512"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":107,"start":1}},{"range":{"end":288,"start":259}},{"range":{"end":328,"start":302}},{"range":{"end":372,"start":347}},{"range":{"end":486,"start":462}},{"range":{"end":615,"start":575}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"clc1","uniquename":"SJAG_04517"},{"name":"pcs2","uniquename":"SJAG_04516"},{"uniquename":"SJAG_04515"},{"name":"oma1","uniquename":"SJAG_04514"},{"name":"bos1","uniquename":"SJAG_04513"},{"name":"tos4","uniquename":"SJAG_04512"},{"name":"pss1","uniquename":"SJAG_04511"},{"name":"cdc42","uniquename":"SJAG_04509"},{"name":"pds5","uniquename":"SJAG_04508"},{"name":"ppk1","uniquename":"SJAG_04507"},{"name":"itr1","uniquename":"SJAG_04506"}],"genes_by_uniquename":{"SJAG_04512":null,"SPAP14E8.02":null,"YDR501W":null,"YLR183C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"CDD","description":"FHA_PLM2-like","id":"cd22699","locations":[{"end":206,"start":98}],"match_end":206,"match_start":98,"name":"FHA_PLM2-like"},{"dbname":"PROSITE_PROFILES","description":"Forkhead-associated (FHA) domain profile.","id":"PS50006","interpro_description":"Forkhead-associated (FHA) domain","interpro_id":"IPR000253","interpro_name":"FHA_dom","locations":[{"end":163,"start":117}],"match_end":163,"match_start":117,"name":"FHA_DOMAIN"},{"dbname":"SUPERFAMILY","id":"SSF49879","interpro_description":"SMAD/FHA domain superfamily","interpro_id":"IPR008984","interpro_name":"SMAD_FHA_dom_sf","locations":[{"end":182,"start":114}],"match_end":182,"match_start":114,"name":"SMAD/FHA domain"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":107,"start":1},{"end":288,"start":259},{"end":328,"start":302},{"end":372,"start":347},{"end":486,"start":462},{"end":615,"start":575}],"match_end":615,"match_start":1,"name":"disorder_prediction"},{"dbname":"MOBIDB-Low-complexity","description":"consensus disorder prediction","id":"mobidb-lite-Low-complexity","locations":[{"end":26,"start":17},{"end":85,"start":69}],"match_end":85,"match_start":17,"name":"disorder_prediction"},{"dbname":"MOBIDB-Positive-Polyelectrolyte","description":"consensus disorder prediction","id":"mobidb-lite-Positive-Polyelectrolyte","locations":[{"end":602,"start":586}],"match_end":602,"match_start":586,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.3","end_pos":713925,"start_pos":712078,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":25,"start":16}},{"range":{"end":57,"start":47}},{"range":{"end":84,"start":68}},{"range":{"end":242,"start":231}},{"range":{"end":294,"start":269}},{"range":{"end":504,"start":492}},{"range":{"end":614,"start":597}}],"name":"tos4","ortholog_annotations":[{"gene_uniquename":"SJAG_04512","ortholog_taxonid":4896,"ortholog_uniquename":"SPAP14E8.02","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04512","ortholog_taxonid":4932,"ortholog_uniquename":"YDR501W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04512","ortholog_taxonid":4932,"ortholog_uniquename":"YDR501W","reference_uniquename":"PMID:26896847"},{"gene_uniquename":"SJAG_04512","ortholog_taxonid":4932,"ortholog_uniquename":"YLR183C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04512","ortholog_taxonid":4932,"ortholog_uniquename":"YLR183C","reference_uniquename":"PMID:26896847"}],"product":"chromatin binding FHA domain protein Tos4","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0003682"]}},"subset_termids":["GO:0005634","GO:0005694","GO:0006355","GO:0006351"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000785":null,"GO:0003682":null,"GO:0005634":null,"GO:0006974":null,"GO:0045892":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04512.1"],"transcripts_by_uniquename":{"SJAG_04512.1":null},"uniprot_identifier":"B6K709","uniquename":"SJAG_04512"}


id: SJAG_04513
data:
  {"coiled_coil_coords":[{"range":{"end":104,"start":70}}],"cv_annotations":{"biological_process":[{"annotations":[101398],"is_not":false,"summary":null,"term":"GO:0006888"},{"annotations":[101399],"is_not":false,"summary":null,"term":"GO:0006886"},{"annotations":[101400],"is_not":false,"summary":null,"term":"GO:0006906"}],"cellular_component":[{"annotations":[101393],"is_not":false,"summary":null,"term":"GO:0005789"},{"annotations":[101394],"is_not":false,"summary":null,"term":"GO:0012507"},{"annotations":[60701],"is_not":false,"summary":null,"term":"GO:0005794"},{"annotations":[101396],"is_not":false,"summary":null,"term":"GO:0031902"},{"annotations":[101397],"is_not":false,"summary":null,"term":"GO:0031201"}],"molecular_function":[{"annotations":[60700],"is_not":false,"summary":null,"term":"GO:0005484"}],"mondo":[{"annotations":[85951],"is_not":false,"summary":null,"term":"MONDO:0859336"},{"annotations":[86384],"is_not":false,"summary":null,"term":"MONDO:0013526"}]},"dbxrefs":["UniProtKB/TrEMBL:B6K710","EnsemblGenomes-Tr:EEB09314","EnsemblGenomes-Gn:SJAG_04513","GOA:B6K710","InterPro:IPR027027"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":133,"start":111}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"cdc37","uniquename":"SJAG_04518"},{"name":"clc1","uniquename":"SJAG_04517"},{"name":"pcs2","uniquename":"SJAG_04516"},{"uniquename":"SJAG_04515"},{"name":"oma1","uniquename":"SJAG_04514"},{"name":"bos1","uniquename":"SJAG_04513"},{"name":"tos4","uniquename":"SJAG_04512"},{"name":"pss1","uniquename":"SJAG_04511"},{"name":"cdc42","uniquename":"SJAG_04509"},{"name":"pds5","uniquename":"SJAG_04508"},{"name":"ppk1","uniquename":"SJAG_04507"}],"genes_by_uniquename":{"HGNC:4431":null,"SJAG_04513":null,"SPAP14E8.03":null,"YLR078C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Snare region anchored in the vesicle membrane C-terminus","id":"PF12352","locations":[{"end":211,"start":148}],"match_end":211,"match_start":148,"name":"V-SNARE_C"},{"dbname":"CDD","description":"SNARE_GS27","id":"cd15863","locations":[{"end":211,"start":146}],"match_end":211,"match_start":146,"name":"SNARE_GS27"},{"dbname":"PANTHER","id":"PTHR21230","locations":[{"end":237,"start":42}],"match_end":237,"match_start":42,"name":"VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED"},{"dbname":"PIRSF","id":"PIRSF028865","interpro_description":"GOSR2/Membrin/Bos1","interpro_id":"IPR027027","interpro_name":"GOSR2/Membrin/Bos1","locations":[{"end":238,"start":2}],"match_end":238,"match_start":2,"name":"Membrin-2"},{"dbname":"COILS","id":"Coil","locations":[{"end":104,"start":70}],"match_end":104,"match_start":70,"name":"Coil"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":133,"start":111}],"match_end":133,"match_start":111,"name":"disorder_prediction"},{"dbname":"MOBIDB-Low-complexity","description":"consensus disorder prediction","id":"mobidb-lite-Low-complexity","locations":[{"end":133,"start":123}],"match_end":133,"match_start":123,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polyampholyte","description":"consensus disorder prediction","id":"mobidb-lite-Polyampholyte","locations":[{"end":122,"start":111}],"match_end":122,"match_start":111,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.3","end_pos":711320,"start_pos":710479,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":53,"start":45}},{"range":{"end":141,"start":120}}],"name":"bos1","ortholog_annotations":[{"gene_uniquename":"SJAG_04513","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:4431","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04513","ortholog_taxonid":4896,"ortholog_uniquename":"SPAP14E8.03","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04513","ortholog_taxonid":4932,"ortholog_uniquename":"YLR078C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04513","ortholog_taxonid":4932,"ortholog_uniquename":"YLR078C","reference_uniquename":"PMID:26896847"}],"product":"SNARE Bos1","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0005484"]}},"subset_termids":["GO:0061024","GO:0005794","GO:0016192","GO:0060090","MONDO:0005027","GO:0005768","GO:0005783","GO:0005789","GO:0031410"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005484":null,"GO:0005789":null,"GO:0005794":null,"GO:0006886":null,"GO:0006888":null,"GO:0006906":null,"GO:0012507":null,"GO:0031201":null,"GO:0031902":null,"MONDO:0013526":null,"MONDO:0859336":null},"tm_domain_coords":[{"assigned_by":"TMHMM","range":{"end":234,"start":217}}],"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04513.1"],"transcripts_by_uniquename":{"SJAG_04513.1":null},"uniprot_identifier":"B6K710","uniquename":"SJAG_04513"}


id: SJAG_04514
data:
  {"cv_annotations":{"biological_process":[{"annotations":[77643],"is_not":false,"summary":null,"term":"GO:0034982"},{"annotations":[77644],"is_not":false,"summary":null,"term":"GO:0006515"}],"cellular_component":[{"annotations":[77642],"is_not":false,"summary":null,"term":"GO:0005743"}],"molecular_function":[{"annotations":[77645],"is_not":false,"summary":null,"term":"GO:0004222"}]},"dbxrefs":["InterPro:IPR001915","GOA:B6K711","EnsemblGenomes-Gn:SJAG_04514","UniProtKB/TrEMBL:B6K711","EnsemblGenomes-Tr:EEB09315"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"uniquename":"SJAG_04519"},{"name":"cdc37","uniquename":"SJAG_04518"},{"name":"clc1","uniquename":"SJAG_04517"},{"name":"pcs2","uniquename":"SJAG_04516"},{"uniquename":"SJAG_04515"},{"name":"oma1","uniquename":"SJAG_04514"},{"name":"bos1","uniquename":"SJAG_04513"},{"name":"tos4","uniquename":"SJAG_04512"},{"name":"pss1","uniquename":"SJAG_04511"},{"name":"cdc42","uniquename":"SJAG_04509"},{"name":"pds5","uniquename":"SJAG_04508"}],"genes_by_uniquename":{"HGNC:29661":null,"SJAG_04514":null,"SPAP14E8.04":null,"YKR087C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Peptidase family M48","id":"PF01435","interpro_description":"Peptidase M48","interpro_id":"IPR001915","interpro_name":"Peptidase_M48","locations":[{"end":310,"start":134}],"match_end":310,"match_start":134,"name":"Peptidase_M48"},{"dbname":"CDD","description":"M48C_Oma1_like","id":"cd07331","locations":[{"end":314,"start":136}],"match_end":314,"match_start":136,"name":"M48C_Oma1_like"},{"dbname":"GENE3D","id":"G3DSA:3.30.2010.10","locations":[{"end":210,"start":127}],"match_end":210,"match_start":127,"name":"Metalloproteases (\"zincins\"), catalytic domain"},{"dbname":"PANTHER","id":"PTHR22726","interpro_description":"Mitochondrial and Outer Membrane Metalloprotease","interpro_id":"IPR051156","interpro_name":"Mito/Outer_Membr_Metalloprot","locations":[{"end":333,"start":53}],"match_end":333,"match_start":53,"name":"METALLOENDOPEPTIDASE OMA1"}],"location":{"chromosome_name":"supercont5.3","end_pos":710219,"start_pos":709200,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":243,"start":235}}],"name":"oma1","ortholog_annotations":[{"gene_uniquename":"SJAG_04514","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:29661","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04514","ortholog_taxonid":4896,"ortholog_uniquename":"SPAP14E8.04","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04514","ortholog_taxonid":4932,"ortholog_uniquename":"YKR087C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04514","ortholog_taxonid":4932,"ortholog_uniquename":"YKR087C","reference_uniquename":"PMID:26896847"}],"product":"metallopeptidase Oma1","references_by_uniquename":{"GO_REF:0000033":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0004222"]}},"subset_termids":["GO:0030163","GO:0005739","GO:0051604","GO:0140096","GO:0008233"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0004222":null,"GO:0005743":null,"GO:0006515":null,"GO:0034982":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04514.1"],"transcripts_by_uniquename":{"SJAG_04514.1":null},"uniprot_identifier":"B6K711","uniquename":"SJAG_04514"}


id: SJAG_04515
data:
  {"cv_annotations":{"biological_process":[{"annotations":[101409],"is_not":false,"summary":null,"term":"GO:0006783"},{"annotations":[101410],"is_not":false,"summary":null,"term":"GO:1990542"}],"cellular_component":[{"annotations":[101407],"is_not":false,"summary":null,"term":"GO:0005783"},{"annotations":[101408],"is_not":false,"summary":null,"term":"GO:0005743"}]},"dbxrefs":["EnsemblGenomes-Tr:EEB09316","GOA:B6K712","InterPro:IPR005349","UniProtKB/TrEMBL:B6K712","EnsemblGenomes-Gn:SJAG_04515"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"apc13","uniquename":"SJAG_04520"},{"uniquename":"SJAG_04519"},{"name":"cdc37","uniquename":"SJAG_04518"},{"name":"clc1","uniquename":"SJAG_04517"},{"name":"pcs2","uniquename":"SJAG_04516"},{"uniquename":"SJAG_04515"},{"name":"oma1","uniquename":"SJAG_04514"},{"name":"bos1","uniquename":"SJAG_04513"},{"name":"tos4","uniquename":"SJAG_04512"},{"name":"pss1","uniquename":"SJAG_04511"},{"name":"cdc42","uniquename":"SJAG_04509"}],"genes_by_uniquename":{"HGNC:20952":null,"HGNC:21076":null,"HGNC:21384":null,"SJAG_04515":null,"SPAP14E8.05c":null,"YJR085C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Transmembrane proteins 14C","id":"PF03647","interpro_description":"TMEM14 family","interpro_id":"IPR005349","interpro_name":"TMEM14","locations":[{"end":99,"start":9}],"match_end":99,"match_start":9,"name":"Tmemb_14"},{"dbname":"GENE3D","id":"G3DSA:1.10.10.1740","interpro_description":"TMEM14 superfamily","interpro_id":"IPR044890","interpro_name":"TMEM14_sf","locations":[{"end":107,"start":1}],"match_end":107,"match_start":1},{"dbname":"PANTHER","id":"PTHR12668","interpro_description":"TMEM14 family","interpro_id":"IPR005349","interpro_name":"TMEM14","locations":[{"end":96,"start":3}],"match_end":96,"match_start":3,"name":"TRANSMEMBRANE PROTEIN 14, 15"}],"location":{"chromosome_name":"supercont5.3","end_pos":708842,"start_pos":708507,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":73,"start":59}}],"ortholog_annotations":[{"gene_uniquename":"SJAG_04515","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:20952","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04515","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:21076","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04515","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:21384","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04515","ortholog_taxonid":4896,"ortholog_uniquename":"SPAP14E8.05c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04515","ortholog_taxonid":4932,"ortholog_uniquename":"YJR085C","reference_uniquename":"PMID:29761456"}],"product":"mitochondrial protoporphyrinogen IX import factor, TMEM14 family","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{},"subset_termids":["GO:0005739","GO:0033013","GO:0005783","GO:0055085"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005743":null,"GO:0005783":null,"GO:0006783":null,"GO:1990542":null},"tm_domain_coords":[{"assigned_by":"TMHMM","range":{"end":26,"start":9}}],"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04515.1"],"transcripts_by_uniquename":{"SJAG_04515.1":null},"uniprot_identifier":"B6K712","uniquename":"SJAG_04515"}


id: SJAG_04516
data:
  {"cv_annotations":{"biological_process":[{"annotations":[71183],"is_not":false,"summary":null,"term":"GO:0098849"},{"annotations":[71182],"is_not":false,"summary":null,"term":"GO:0010273"},{"annotations":[71184],"is_not":false,"summary":null,"term":"GO:0046938"}],"cellular_component":[{"annotations":[97688],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[97689],"is_not":false,"summary":null,"term":"GO:0005634"}],"molecular_function":[{"annotations":[97694],"is_not":false,"summary":null,"term":"GO:0046870"},{"annotations":[71181],"is_not":false,"summary":null,"term":"GO:0016756"}]},"dbxrefs":["InterPro:IPR038156","UniProtKB/TrEMBL:B6K713","EnsemblGenomes-Gn:SJAG_04516","InterPro:IPR007719","GOA:B6K713","InterPro:IPR038765","EnsemblGenomes-Tr:EEB09317","InterPro:IPR040409"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"uniquename":"SJAG_04521"},{"name":"apc13","uniquename":"SJAG_04520"},{"uniquename":"SJAG_04519"},{"name":"cdc37","uniquename":"SJAG_04518"},{"name":"clc1","uniquename":"SJAG_04517"},{"name":"pcs2","uniquename":"SJAG_04516"},{"uniquename":"SJAG_04515"},{"name":"oma1","uniquename":"SJAG_04514"},{"name":"bos1","uniquename":"SJAG_04513"},{"name":"tos4","uniquename":"SJAG_04512"},{"name":"pss1","uniquename":"SJAG_04511"}],"genes_by_uniquename":{"SJAG_04516":null,"SPAC3H1.10":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Phytochelatin synthase","id":"PF05023","interpro_description":"Phytochelatin synthase, N-terminal catalytic domain","interpro_id":"IPR007719","interpro_name":"PCS_N","locations":[{"end":248,"start":42}],"match_end":248,"match_start":42,"name":"Phytochelatin"},{"dbname":"PROSITE_PROFILES","description":"Phytochelatin synthase (PCS) domain profile.","id":"PS51443","interpro_description":"Phytochelatin synthase, N-terminal catalytic domain","interpro_id":"IPR007719","interpro_name":"PCS_N","locations":[{"end":256,"start":37}],"match_end":256,"match_start":37,"name":"PCS"},{"dbname":"FUNFAM","description":"Glutathione gamma-glutamylcysteinyltransferase 1","id":"G3DSA:3.90.70.30:FF:000001","locations":[{"end":255,"start":50}],"match_end":255,"match_start":50},{"dbname":"SUPERFAMILY","id":"SSF54001","interpro_description":"Papain-like cysteine peptidase superfamily","interpro_id":"IPR038765","interpro_name":"Papain-like_cys_pep_sf","locations":[{"end":251,"start":47}],"match_end":251,"match_start":47,"name":"Cysteine proteinases"},{"dbname":"GENE3D","id":"G3DSA:3.90.70.30","interpro_description":"Phytochelatin synthase, N-terminal domain superfamily","interpro_id":"IPR038156","interpro_name":"PCS_N_sf","locations":[{"end":254,"start":51}],"match_end":254,"match_start":51},{"dbname":"PANTHER","id":"PTHR33447","interpro_description":"Phytochelatin synthase","interpro_id":"IPR040409","interpro_name":"PCS-like","locations":[{"end":413,"start":40}],"match_end":413,"match_start":40,"name":"GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE"}],"location":{"chromosome_name":"supercont5.3","end_pos":707999,"start_pos":706749,"strand":"reverse"},"name":"pcs2","ortholog_annotations":[{"gene_uniquename":"SJAG_04516","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC3H1.10","reference_uniquename":"PMID:21511999"}],"product":"phytochelatin synthetase","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0046870"],"not-binding":["GO:0016756"]}},"subset_termids":["GO:0005634","GO:0019748","GO:0005829","GO:0098754","GO:0016746"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005634":null,"GO:0005829":null,"GO:0010273":null,"GO:0016756":null,"GO:0046870":null,"GO:0046938":null,"GO:0098849":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04516.1"],"transcripts_by_uniquename":{"SJAG_04516.1":null},"uniprot_identifier":"B6K713","uniquename":"SJAG_04516"}


id: SJAG_04517
data:
  {"coiled_coil_coords":[{"range":{"end":48,"start":28}},{"range":{"end":159,"start":139}},{"range":{"end":192,"start":172}}],"cv_annotations":{"biological_process":[{"annotations":[113216],"is_not":false,"summary":null,"term":"GO:0072583"},{"annotations":[113217],"is_not":false,"summary":null,"term":"GO:0006887"},{"annotations":[58811],"is_not":false,"summary":null,"term":"GO:0006886"}],"cellular_component":[{"annotations":[113208],"is_not":false,"summary":null,"term":"GO:0030479"},{"annotations":[58810],"is_not":false,"summary":null,"term":"GO:0030130"},{"annotations":[58812],"is_not":false,"summary":null,"term":"GO:0005905"},{"annotations":[113213],"is_not":false,"summary":null,"term":"GO:0005768"},{"annotations":[113215],"is_not":false,"summary":null,"term":"GO:0005886"}],"molecular_function":[{"annotations":[58809],"is_not":false,"summary":null,"term":"GO:0005198"}]},"dbxrefs":["EnsemblGenomes-Tr:EEB09318","EnsemblGenomes-Gn:SJAG_04517","UniProtKB/TrEMBL:B6K714","GOA:B6K714","InterPro:IPR000996"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":137,"start":1}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"rga4","uniquename":"SJAG_04522"},{"uniquename":"SJAG_04521"},{"name":"apc13","uniquename":"SJAG_04520"},{"uniquename":"SJAG_04519"},{"name":"cdc37","uniquename":"SJAG_04518"},{"name":"clc1","uniquename":"SJAG_04517"},{"name":"pcs2","uniquename":"SJAG_04516"},{"uniquename":"SJAG_04515"},{"name":"oma1","uniquename":"SJAG_04514"},{"name":"bos1","uniquename":"SJAG_04513"},{"name":"tos4","uniquename":"SJAG_04512"}],"genes_by_uniquename":{"HGNC:2090":null,"HGNC:2091":null,"SJAG_04517":null,"SPBC9B6.08":null,"YGR167W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Clathrin light chain","id":"PF01086","interpro_description":"Clathrin light chain","interpro_id":"IPR000996","interpro_name":"Clathrin_L-chain","locations":[{"end":247,"start":4}],"match_end":247,"match_start":4,"name":"Clathrin_lg_ch"},{"dbname":"PANTHER","id":"PTHR10639","interpro_description":"Clathrin light chain","interpro_id":"IPR000996","interpro_name":"Clathrin_L-chain","locations":[{"end":222,"start":30}],"match_end":222,"match_start":30,"name":"CLATHRIN LIGHT CHAIN"},{"dbname":"COILS","id":"Coil","locations":[{"end":48,"start":28},{"end":159,"start":139},{"end":192,"start":172}],"match_end":192,"match_start":28,"name":"Coil"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":137,"start":1}],"match_end":137,"match_start":1,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polar","description":"consensus disorder prediction","id":"mobidb-lite-Polar","locations":[{"end":24,"start":13}],"match_end":24,"match_start":13,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polyampholyte","description":"consensus disorder prediction","id":"mobidb-lite-Polyampholyte","locations":[{"end":46,"start":30}],"match_end":46,"match_start":30,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.3","end_pos":706171,"start_pos":705419,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":130,"start":114}}],"name":"clc1","ortholog_annotations":[{"gene_uniquename":"SJAG_04517","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:2090","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04517","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:2091","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04517","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC9B6.08","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04517","ortholog_taxonid":4932,"ortholog_uniquename":"YGR167W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04517","ortholog_taxonid":4932,"ortholog_uniquename":"YGR167W","reference_uniquename":"PMID:26896847"}],"product":"clathrin light chain Clc1","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000043":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0005198"]}},"subset_termids":["GO:0005768","GO:0005938","GO:0005886","GO:0016192","GO:0030479","GO:0015629","GO:0005198","GO:0031410","GO:0005794"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005198":null,"GO:0005768":null,"GO:0005886":null,"GO:0005905":null,"GO:0006886":null,"GO:0006887":null,"GO:0030130":null,"GO:0030479":null,"GO:0072583":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04517.1"],"transcripts_by_uniquename":{"SJAG_04517.1":null},"uniprot_identifier":"B6K714","uniquename":"SJAG_04517"}


id: SJAG_04518
data:
  {"coiled_coil_coords":[{"range":{"end":174,"start":136}}],"cv_annotations":{"biological_process":[{"annotations":[70280],"is_not":false,"summary":null,"term":"GO:0006457"}],"cellular_component":[{"annotations":[113221],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[113222],"is_not":false,"summary":null,"term":"GO:0005634"}],"molecular_function":[{"annotations":[70279],"is_not":false,"summary":null,"term":"GO:0031072"},{"annotations":[70282],"is_not":false,"summary":null,"term":"GO:0051087"},{"annotations":[70281],"is_not":false,"summary":null,"term":"GO:0051082"}]},"dbxrefs":["InterPro:IPR013855","UniProtKB/TrEMBL:B6K715","GOA:B6K715","InterPro:IPR013874","EnsemblGenomes-Gn:SJAG_04518","InterPro:IPR004918","InterPro:IPR013873","InterPro:IPR038189","EnsemblGenomes-Tr:EEB09319"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":236,"start":209}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"uniquename":"SJAG_04523"},{"name":"rga4","uniquename":"SJAG_04522"},{"uniquename":"SJAG_04521"},{"name":"apc13","uniquename":"SJAG_04520"},{"uniquename":"SJAG_04519"},{"name":"cdc37","uniquename":"SJAG_04518"},{"name":"clc1","uniquename":"SJAG_04517"},{"name":"pcs2","uniquename":"SJAG_04516"},{"uniquename":"SJAG_04515"},{"name":"oma1","uniquename":"SJAG_04514"},{"name":"bos1","uniquename":"SJAG_04513"}],"genes_by_uniquename":{"HGNC:1735":null,"SJAG_04518":null,"SPBC9B6.10":null,"YDR168W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Cdc37 N terminal kinase binding","id":"PF03234","interpro_description":"Cdc37, N-terminal domain","interpro_id":"IPR013855","interpro_name":"Cdc37_N_dom","locations":[{"end":124,"start":3}],"match_end":124,"match_start":3,"name":"CDC37_N"},{"dbname":"PFAM","description":"Cdc37 C terminal domain","id":"PF08564","interpro_description":"Cdc37, C-terminal","interpro_id":"IPR013873","interpro_name":"Cdc37_C","locations":[{"end":456,"start":382}],"match_end":456,"match_start":382,"name":"CDC37_C"},{"dbname":"PFAM","description":"Cdc37 Hsp90 binding domain","id":"PF08565","interpro_description":"Cdc37, Hsp90 binding","interpro_id":"IPR013874","interpro_name":"Cdc37_Hsp90-bd","locations":[{"end":357,"start":248}],"match_end":357,"match_start":248,"name":"CDC37_M"},{"dbname":"SMART","id":"SM01069","interpro_description":"Cdc37, C-terminal","interpro_id":"IPR013873","interpro_name":"Cdc37_C","locations":[{"end":460,"start":380}],"match_end":460,"match_start":380,"name":"CDC37_C_2"},{"dbname":"SMART","id":"SM01071","interpro_description":"Cdc37, N-terminal domain","interpro_id":"IPR013855","interpro_name":"Cdc37_N_dom","locations":[{"end":184,"start":2}],"match_end":184,"match_start":2,"name":"CDC37_N_2"},{"dbname":"SMART","id":"SM01070","interpro_description":"Cdc37, Hsp90 binding","interpro_id":"IPR013874","interpro_name":"Cdc37_Hsp90-bd","locations":[{"end":365,"start":183}],"match_end":365,"match_start":183,"name":"CDC37_M_2"},{"dbname":"SUPERFAMILY","id":"SSF101391","locations":[{"end":448,"start":240}],"match_end":448,"match_start":240,"name":"Hsp90 co-chaperone CDC37"},{"dbname":"GENE3D","id":"G3DSA:1.20.58.610","interpro_description":"Cdc37, Hsp90-binding domain superfamily","interpro_id":"IPR038189","interpro_name":"Cdc37_Hsp90-bd_sf","locations":[{"end":358,"start":241}],"match_end":358,"match_start":241,"name":"Cdc37, Hsp90 binding domain"},{"dbname":"PANTHER","id":"PTHR12800","interpro_description":"Cdc37","interpro_id":"IPR004918","interpro_name":"Cdc37","locations":[{"end":454,"start":1}],"match_end":454,"match_start":1,"name":"CDC37-RELATED"},{"dbname":"COILS","id":"Coil","locations":[{"end":174,"start":136}],"match_end":174,"match_start":136,"name":"Coil"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":236,"start":209}],"match_end":236,"match_start":209,"name":"disorder_prediction"},{"dbname":"MOBIDB-Low-complexity","description":"consensus disorder prediction","id":"mobidb-lite-Low-complexity","locations":[{"end":227,"start":215}],"match_end":227,"match_start":215,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.3","end_pos":704878,"start_pos":703151,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":200,"start":187}},{"range":{"end":244,"start":214}},{"range":{"end":396,"start":383}}],"name":"cdc37","ortholog_annotations":[{"gene_uniquename":"SJAG_04518","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:1735","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04518","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC9B6.10","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04518","ortholog_taxonid":4932,"ortholog_uniquename":"YDR168W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04518","ortholog_taxonid":4932,"ortholog_uniquename":"YDR168W","reference_uniquename":"PMID:26896847"}],"product":"Hsp90 co-chaperone Cdc37","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0051082","GO:0031072","GO:0051087"]}},"subset_termids":["GO:0051604","GO:0005829","GO:0051082","GO:0005634","GO:0006457"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005634":null,"GO:0005829":null,"GO:0006457":null,"GO:0031072":null,"GO:0051082":null,"GO:0051087":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04518.1"],"transcripts_by_uniquename":{"SJAG_04518.1":null},"uniprot_identifier":"B6K715","uniquename":"SJAG_04518"}


id: SJAG_04519
data:
  {"cv_annotations":{"biological_process":[{"annotations":[113227],"is_not":false,"summary":null,"term":"GO:0006364"}],"cellular_component":[{"annotations":[113225],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[113226],"is_not":false,"summary":null,"term":"GO:0005634"}],"molecular_function":[{"annotations":[77704],"is_not":false,"summary":null,"term":"GO:0004535"},{"annotations":[113229],"is_not":false,"summary":null,"term":"GO:0004521"}]},"dbxrefs":["EnsemblGenomes-Tr:EEB09320","InterPro:IPR005135","InterPro:IPR036691","UniProtKB/TrEMBL:B6K716","EnsemblGenomes-Gn:SJAG_04519"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":53,"start":34}},{"range":{"end":341,"start":308}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"esf2","uniquename":"SJAG_04524"},{"uniquename":"SJAG_04523"},{"name":"rga4","uniquename":"SJAG_04522"},{"uniquename":"SJAG_04521"},{"name":"apc13","uniquename":"SJAG_04520"},{"uniquename":"SJAG_04519"},{"name":"cdc37","uniquename":"SJAG_04518"},{"name":"clc1","uniquename":"SJAG_04517"},{"name":"pcs2","uniquename":"SJAG_04516"},{"uniquename":"SJAG_04515"},{"name":"oma1","uniquename":"SJAG_04514"}],"genes_by_uniquename":{"HGNC:14254":null,"SJAG_04519":null,"SPBC9B6.11c":null,"YML118W":null,"YMR285C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Endonuclease/Exonuclease/phosphatase family","id":"PF03372","interpro_description":"Endonuclease/exonuclease/phosphatase","interpro_id":"IPR005135","interpro_name":"Endo/exonuclease/phosphatase","locations":[{"end":477,"start":80}],"match_end":477,"match_start":80,"name":"Exo_endo_phos"},{"dbname":"SUPERFAMILY","id":"SSF56219","interpro_description":"Endonuclease/exonuclease/phosphatase superfamily","interpro_id":"IPR036691","interpro_name":"Endo/exonu/phosph_ase_sf","locations":[{"end":267,"start":71},{"end":426,"start":391},{"end":486,"start":459}],"match_end":486,"match_start":71,"name":"DNase I-like"},{"dbname":"GENE3D","id":"G3DSA:3.60.10.10","interpro_description":"Endonuclease/exonuclease/phosphatase superfamily","interpro_id":"IPR036691","interpro_name":"Endo/exonu/phosph_ase_sf","locations":[{"end":299,"start":51},{"end":487,"start":380}],"match_end":487,"match_start":51,"name":"Endonuclease/exonuclease/phosphatase"},{"dbname":"PANTHER","id":"PTHR12121","interpro_description":"CCR4/nocturin mRNA turnover and transcription","interpro_id":"IPR050410","interpro_name":"CCR4/nocturin_mRNA_transcr","locations":[{"end":485,"start":36}],"match_end":485,"match_start":36,"name":"CARBON CATABOLITE REPRESSOR PROTEIN 4"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":53,"start":34},{"end":341,"start":308}],"match_end":341,"match_start":34,"name":"disorder_prediction"},{"dbname":"MOBIDB-Low-complexity","description":"consensus disorder prediction","id":"mobidb-lite-Low-complexity","locations":[{"end":341,"start":331}],"match_end":341,"match_start":331,"name":"disorder_prediction"},{"dbname":"MOBIDB-Negative-Polyelectrolyte","description":"consensus disorder prediction","id":"mobidb-lite-Negative-Polyelectrolyte","locations":[{"end":330,"start":317}],"match_end":330,"match_start":317,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.3","end_pos":702927,"start_pos":701464,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":38,"start":22}},{"range":{"end":344,"start":327}},{"range":{"end":358,"start":349}}],"ortholog_annotations":[{"gene_uniquename":"SJAG_04519","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:14254","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04519","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC9B6.11c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04519","ortholog_taxonid":4932,"ortholog_uniquename":"YML118W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04519","ortholog_taxonid":4932,"ortholog_uniquename":"YML118W","reference_uniquename":"PMID:26896847"},{"gene_uniquename":"SJAG_04519","ortholog_taxonid":4932,"ortholog_uniquename":"YMR285C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04519","ortholog_taxonid":4932,"ortholog_uniquename":"YMR285C","reference_uniquename":"PMID:26896847"}],"product":"CCR4/nocturin family endoribonuclease","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0004521","GO:0004535"]}},"subset_termids":["GO:0004527","GO:0005829","GO:0042254","GO:0016788","GO:0140098","GO:0005634"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0004521":null,"GO:0004535":null,"GO:0005634":null,"GO:0005829":null,"GO:0006364":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04519.1"],"transcripts_by_uniquename":{"SJAG_04519.1":null},"uniprot_identifier":"B6K716","uniquename":"SJAG_04519"}


id: SJAG_04520
data:
  {"cv_annotations":{"biological_process":[{"annotations":[107908],"is_not":false,"summary":null,"term":"GO:0031145"}],"cellular_component":[{"annotations":[58059],"is_not":false,"summary":null,"term":"GO:0005680"},{"annotations":[107906],"is_not":false,"summary":null,"term":"GO:0005829"}]},"dbxrefs":["EnsemblGenomes-Tr:EEB09321","GOA:B6K717","InterPro:IPR008401","UniProtKB/TrEMBL:B6K717","EnsemblGenomes-Gn:SJAG_04520"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"uniquename":"SJAG_04525"},{"name":"esf2","uniquename":"SJAG_04524"},{"uniquename":"SJAG_04523"},{"name":"rga4","uniquename":"SJAG_04522"},{"uniquename":"SJAG_04521"},{"name":"apc13","uniquename":"SJAG_04520"},{"uniquename":"SJAG_04519"},{"name":"cdc37","uniquename":"SJAG_04518"},{"name":"clc1","uniquename":"SJAG_04517"},{"name":"pcs2","uniquename":"SJAG_04516"},{"uniquename":"SJAG_04515"}],"genes_by_uniquename":{"HGNC:24540":null,"SJAG_04520":null,"SPBC28E12.01c":null,"YDR260C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Apc13p protein","id":"PF05839","interpro_description":"Apc13","interpro_id":"IPR008401","interpro_name":"Apc13","locations":[{"end":81,"start":1}],"match_end":81,"match_start":1,"name":"Apc13p"},{"dbname":"PANTHER","id":"PTHR28526","locations":[{"end":82,"start":2}],"match_end":82,"match_start":2,"name":"ANAPHASE-PROMOTING COMPLEX SUBUNIT 13"}],"location":{"chromosome_name":"supercont5.3","end_pos":701277,"start_pos":700870,"strand":"forward"},"name":"apc13","ortholog_annotations":[{"gene_uniquename":"SJAG_04520","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:24540","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04520","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC28E12.01c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04520","ortholog_taxonid":4932,"ortholog_uniquename":"YDR260C","reference_uniquename":"PMID:29761456"}],"product":"anaphase-promoting complex TPR lobe accessory factor Apc13","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{},"subset_termids":["GO:0005634","GO:0005829","GO:0030163"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005680":null,"GO:0005829":null,"GO:0031145":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04520.1"],"transcripts_by_uniquename":{"SJAG_04520.1":null},"uniprot_identifier":"B6K717","uniquename":"SJAG_04520"}


id: SJAG_04521
data:
  {"coiled_coil_coords":[{"range":{"end":298,"start":278}}],"cv_annotations":{"cellular_component":[{"annotations":[107909],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[107910],"is_not":false,"summary":null,"term":"GO:0005634"}],"molecular_function":[{"annotations":[107911],"is_not":false,"summary":null,"term":"GO:0003723"}],"mondo":[{"annotations":[87675],"is_not":false,"summary":null,"term":"MONDO:0011037"}]},"dbxrefs":["EnsemblGenomes-Gn:SJAG_04521","UniProtKB/TrEMBL:B6K718","EnsemblGenomes-Tr:EEB09322"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"pac1","uniquename":"SJAG_04527"},{"uniquename":"SJAG_04525"},{"name":"esf2","uniquename":"SJAG_04524"},{"uniquename":"SJAG_04523"},{"name":"rga4","uniquename":"SJAG_04522"},{"uniquename":"SJAG_04521"},{"name":"apc13","uniquename":"SJAG_04520"},{"uniquename":"SJAG_04519"},{"name":"cdc37","uniquename":"SJAG_04518"},{"name":"clc1","uniquename":"SJAG_04517"},{"name":"pcs2","uniquename":"SJAG_04516"}],"genes_by_uniquename":{"HGNC:19351":null,"SJAG_04521":null,"SPBC28E12.02":null,"YLL032C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Mug60/KHD4 KH type I domain","id":"PF24563","interpro_description":"Mug60/KHD4, KH type I domain","interpro_id":"IPR056553","interpro_name":"KH_Mug60-KHD4","locations":[{"end":370,"start":299}],"match_end":370,"match_start":299,"name":"KH_Mug60-KHD4"},{"dbname":"CDD","description":"KH-I_MUG60_like","id":"cd22453","locations":[{"end":635,"start":568}],"match_end":635,"match_start":568,"name":"KH-I_MUG60_like"},{"dbname":"COILS","id":"Coil","locations":[{"end":298,"start":278}],"match_end":298,"match_start":278,"name":"Coil"}],"location":{"chromosome_name":"supercont5.3","end_pos":699761,"start_pos":697821,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":184,"start":168}}],"ortholog_annotations":[{"gene_uniquename":"SJAG_04521","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:19351","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04521","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC28E12.02","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04521","ortholog_taxonid":4932,"ortholog_uniquename":"YLL032C","reference_uniquename":"PMID:29761456"}],"product":"RNA-binding protein, Human BICC1 ortholog, implicated in RNA metabolism","references_by_uniquename":{"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0003723"]}},"subset_termids":["GO:0005634","GO:0005829"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0003723":null,"GO:0005634":null,"GO:0005829":null,"MONDO:0011037":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04521.1"],"transcripts_by_uniquename":{"SJAG_04521.1":null},"uniprot_identifier":"B6K718","uniquename":"SJAG_04521"}


id: SJAG_04522
data:
  {"alleles_by_uniquename":{"SJAG_00028:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00028","name":"rga6delta","uniquename":"SJAG_00028:allele-1"},"SJAG_04280:allele-2":{"allele_type":"amino_acid_mutation","description":"T582G","gene_uniquename":"SJAG_04280","name":"wee1-as8","uniquename":"SJAG_04280:allele-2"},"SJAG_04280:allele-3":{"allele_type":"amino_acid_mutation","description":"G788E","gene_uniquename":"SJAG_04280","name":"wee1-G788E","uniquename":"SJAG_04280:allele-3"},"SJAG_04522:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04522","name":"rga4delta","uniquename":"SJAG_04522:allele-1"}},"coiled_coil_coords":[{"range":{"end":609,"start":582}},{"range":{"end":644,"start":617}}],"cv_annotations":{"biological_process":[{"annotations":[107919],"is_not":false,"summary":null,"term":"GO:0061245"},{"annotations":[107920],"is_not":false,"summary":null,"term":"GO:1903138"},{"annotations":[107921],"is_not":false,"summary":null,"term":"GO:0061173"},{"annotations":[107922],"is_not":false,"summary":null,"term":"GO:2000784"},{"annotations":[107923],"is_not":false,"summary":null,"term":"GO:0032231"},{"annotations":[119796],"is_not":false,"summary":null,"term":"GO:0008360"},{"annotations":[107924],"is_not":false,"summary":null,"term":"GO:1903338"}],"cellular_component":[{"annotations":[71397],"is_not":false,"summary":null,"term":"GO:0051286"},{"annotations":[107915],"is_not":false,"summary":null,"term":"GO:0097575"},{"annotations":[107916],"is_not":false,"summary":null,"term":"GO:0031097"},{"annotations":[71398],"is_not":false,"summary":null,"term":"GO:0005886"},{"annotations":[71400],"is_not":false,"summary":null,"term":"GO:0030427"}],"molecular_function":[{"annotations":[71395],"is_not":false,"summary":null,"term":"GO:0005096"}],"mondo":[{"annotations":[85724],"is_not":false,"summary":null,"term":"MONDO:0011444"}],"multi_locus_phenotype":[{"annotations":[119783],"is_not":false,"summary":null,"term":"FYPO:0007783"},{"annotations":[119794],"is_not":false,"summary":null,"term":"FYPO:0004105"},{"annotations":[119785],"is_not":false,"summary":null,"term":"FYPO:0001369"},{"annotations":[119787],"is_not":false,"summary":null,"term":"FYPO:0004293"}],"single_locus_phenotype":[{"annotations":[119784],"is_not":false,"summary":null,"term":"FYPO:0007783"},{"annotations":[119786],"is_not":false,"summary":null,"term":"FYPO:0001369"},{"annotations":[119780],"is_not":false,"summary":null,"term":"FYPO:0006616"}]},"dbxrefs":["InterPro:IPR000198","EnsemblGenomes-Tr:EEB09323","GOA:B6K719","InterPro:IPR001781","EnsemblGenomes-Gn:SJAG_04522","InterPro:IPR008936","UniProtKB/TrEMBL:B6K719"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":375,"start":352}},{"range":{"end":442,"start":423}},{"range":{"end":706,"start":634}}],"feature_publications":[{"reference_uniquename":"PMID:30664646","source":"canto"}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"rud3","uniquename":"SJAG_04528"},{"name":"pac1","uniquename":"SJAG_04527"},{"uniquename":"SJAG_04525"},{"name":"esf2","uniquename":"SJAG_04524"},{"uniquename":"SJAG_04523"},{"name":"rga4","uniquename":"SJAG_04522"},{"uniquename":"SJAG_04521"},{"name":"apc13","uniquename":"SJAG_04520"},{"uniquename":"SJAG_04519"},{"name":"cdc37","uniquename":"SJAG_04518"},{"name":"clc1","uniquename":"SJAG_04517"}],"genes_by_uniquename":{"HGNC:1943":null,"HGNC:1944":null,"SJAG_00028":null,"SJAG_04280":null,"SJAG_04522":null,"SPBC28E12.03":null,"YDR379W":null,"YOR127W":null},"genotypes_by_uniquename":{"rga4delta":{"display_name":"rga4delta","display_uniquename":"rga4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]}]},"rga4delta__rga6delta":{"display_name":"rga4delta rga6delta","display_uniquename":"rga4delta__rga6delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_00028:allele-1","expression":"Null"}]}]},"rga4delta__wee1-G788E-G788E-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"rga4delta wee1-G788E(aa)","display_uniquename":"rga4delta__wee1-G788E-G788E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-3","expression":"Not assayed or wild type"}]}]},"rga4delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"rga4delta wee1-as8(T582G aa)","display_uniquename":"rga4delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-2","expression":"Not assayed or wild type"}]}]},"wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"wee1-as8(T582G aa)","display_uniquename":"wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-2","expression":"Not assayed or wild type"}]}]}},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"RhoGAP domain","id":"PF00620","interpro_description":"Rho GTPase-activating protein domain","interpro_id":"IPR000198","interpro_name":"RhoGAP_dom","locations":[{"end":952,"start":808}],"match_end":952,"match_start":808,"name":"RhoGAP"},{"dbname":"PFAM","description":"LIM domain","id":"PF00412","interpro_description":"Zinc finger, LIM-type","interpro_id":"IPR001781","interpro_name":"Znf_LIM","locations":[{"end":81,"start":28},{"end":136,"start":85}],"match_end":136,"match_start":28,"name":"LIM"},{"dbname":"CDD","description":"RhoGAP","id":"cd00159","locations":[{"end":974,"start":808}],"match_end":974,"match_start":808,"name":"RhoGAP"},{"dbname":"CDD","description":"LIM","id":"cd08368","locations":[{"end":81,"start":28},{"end":135,"start":85}],"match_end":135,"match_start":28,"name":"LIM"},{"dbname":"PROSITE_PATTERNS","description":"LIM zinc-binding domain signature.","id":"PS00478","interpro_description":"Zinc finger, LIM-type","interpro_id":"IPR001781","interpro_name":"Znf_LIM","locations":[{"end":62,"start":28},{"end":118,"start":85}],"match_end":118,"match_start":28,"name":"LIM_DOMAIN_1"},{"dbname":"PROSITE_PROFILES","description":"Rho GTPase-activating proteins domain profile.","id":"PS50238","interpro_description":"Rho GTPase-activating protein domain","interpro_id":"IPR000198","interpro_name":"RhoGAP_dom","locations":[{"end":979,"start":786}],"match_end":979,"match_start":786,"name":"RHOGAP"},{"dbname":"PROSITE_PROFILES","description":"LIM domain profile.","id":"PS50023","interpro_description":"Zinc finger, LIM-type","interpro_id":"IPR001781","interpro_name":"Znf_LIM","locations":[{"end":88,"start":26}],"match_end":88,"match_start":26,"name":"LIM_DOMAIN_2"},{"dbname":"SMART","id":"SM00324","interpro_description":"Rho GTPase-activating protein domain","interpro_id":"IPR000198","interpro_name":"RhoGAP_dom","locations":[{"end":976,"start":805}],"match_end":976,"match_start":805,"name":"RhoGAP_3"},{"dbname":"SMART","id":"SM00132","interpro_description":"Zinc finger, LIM-type","interpro_id":"IPR001781","interpro_name":"Znf_LIM","locations":[{"end":81,"start":27},{"end":135,"start":84}],"match_end":135,"match_start":27,"name":"lim_4"},{"dbname":"SUPERFAMILY","id":"SSF48350","interpro_description":"Rho GTPase activation protein","interpro_id":"IPR008936","interpro_name":"Rho_GTPase_activation_prot","locations":[{"end":979,"start":806}],"match_end":979,"match_start":806,"name":"GTPase activation domain, GAP"},{"dbname":"GENE3D","id":"G3DSA:1.10.555.10","interpro_description":"Rho GTPase activation protein","interpro_id":"IPR008936","interpro_name":"Rho_GTPase_activation_prot","locations":[{"end":979,"start":753}],"match_end":979,"match_start":753,"name":"Rho GTPase activation protein"},{"dbname":"GENE3D","id":"G3DSA:2.10.110.10","locations":[{"end":143,"start":16}],"match_end":143,"match_start":16,"name":"Cysteine Rich Protein"},{"dbname":"PANTHER","id":"PTHR23176","interpro_description":"Rho GTPase-activating protein","interpro_id":"IPR050729","interpro_name":"Rho-GAP","locations":[{"end":979,"start":178}],"match_end":979,"match_start":178,"name":"RHO/RAC/CDC GTPASE-ACTIVATING PROTEIN"},{"dbname":"COILS","id":"Coil","locations":[{"end":609,"start":582},{"end":644,"start":617}],"match_end":644,"match_start":582,"name":"Coil"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":375,"start":352},{"end":442,"start":423},{"end":706,"start":634}],"match_end":706,"match_start":352,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polar","description":"consensus disorder prediction","id":"mobidb-lite-Polar","locations":[{"end":442,"start":425},{"end":702,"start":693}],"match_end":702,"match_start":425,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polyampholyte","description":"consensus disorder prediction","id":"mobidb-lite-Polyampholyte","locations":[{"end":674,"start":657}],"match_end":674,"match_start":657,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.3","end_pos":697158,"start_pos":694006,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":190,"start":181}},{"range":{"end":354,"start":341}},{"range":{"end":674,"start":665}}],"name":"rga4","ortholog_annotations":[{"gene_uniquename":"SJAG_04522","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:1943","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04522","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:1944","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04522","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC28E12.03","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04522","ortholog_taxonid":4932,"ortholog_uniquename":"YDR379W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04522","ortholog_taxonid":4932,"ortholog_uniquename":"YDR379W","reference_uniquename":"PMID:26896847"},{"gene_uniquename":"SJAG_04522","ortholog_taxonid":4932,"ortholog_uniquename":"YOR127W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04522","ortholog_taxonid":4932,"ortholog_uniquename":"YOR127W","reference_uniquename":"PMID:26896847"}],"product":"RhoGAP Rga4","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null,"PMID:30664646":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0005096"]},"multi_locus_phenotype":{"cell_phenotype":["FYPO:0004105","FYPO:0001369","FYPO:0004293","FYPO:0007783"]},"single_locus_phenotype":{"cell_phenotype":["FYPO:0007783","FYPO:0006616","FYPO:0001369"]}},"subset_termids":["FYPO:0000005","GO:0005886","GO:0030036","GO:0007163","GO:0071554","FYPO:0001320","GO:0023052","FYPO:0004803","GO:0098772","FYPO:0000631","GO:0030234","GO:0005938","FYPO:0000138","GO:0003924","FYPO:0000032"],"target_of_annotations":[{"ext_rel_display_name":"affected by mutation in","gene":"SJAG_04280","genotype_uniquename":"wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","ontology_name":"fission_yeast_phenotype","reference_uniquename":"PMID:30664646","show_in_summary":true}],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000126":null,"FYECO:0000137":null,"FYECO:0000338":null,"FYPO:0001369":null,"FYPO:0004105":null,"FYPO:0004293":null,"FYPO:0006616":null,"FYPO:0007783":null,"FYPO_EXT:0000001":null,"GO:0005096":null,"GO:0005886":null,"GO:0008360":null,"GO:0030427":null,"GO:0031097":null,"GO:0032231":null,"GO:0051286":null,"GO:0061173":null,"GO:0061245":null,"GO:0097575":null,"GO:1903138":null,"GO:1903338":null,"GO:2000784":null,"MONDO:0011444":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04522.1"],"transcripts_by_uniquename":{"SJAG_04522.1":null},"uniprot_identifier":"B6K719","uniquename":"SJAG_04522"}


id: SJAG_04523
data:
  {"cv_annotations":{},"dbxrefs":["EnsemblGenomes-Gn:SJAG_04523","EnsemblGenomes-Tr:EEB09324","UniProtKB/TrEMBL:B6K720"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"prp31","uniquename":"SJAG_04529"},{"name":"rud3","uniquename":"SJAG_04528"},{"name":"pac1","uniquename":"SJAG_04527"},{"uniquename":"SJAG_04525"},{"name":"esf2","uniquename":"SJAG_04524"},{"uniquename":"SJAG_04523"},{"name":"rga4","uniquename":"SJAG_04522"},{"uniquename":"SJAG_04521"},{"name":"apc13","uniquename":"SJAG_04520"},{"uniquename":"SJAG_04519"},{"name":"cdc37","uniquename":"SJAG_04518"}],"genes_by_uniquename":{"SJAG_04523":null},"has_protein_features":false,"location":{"chromosome_name":"supercont5.3","end_pos":693106,"start_pos":692375,"strand":"reverse"},"product":"candidate S. pombe SPBC28E12.04 ortholog, syntenic position","split_by_parent_groups":{},"taxonid":4897,"taxonomic_distribution":"other","transcript_so_termid":"SO:0000234","transcripts":["SJAG_04523.1"],"transcripts_by_uniquename":{"SJAG_04523.1":null},"uniprot_identifier":"B6K720","uniquename":"SJAG_04523"}


id: SJAG_04524
data:
  {"coiled_coil_coords":[{"range":{"end":279,"start":236}}],"cv_annotations":{"biological_process":[{"annotations":[73353],"is_not":false,"summary":null,"term":"GO:0000480"},{"annotations":[73351],"is_not":false,"summary":null,"term":"GO:0000447"},{"annotations":[73352],"is_not":false,"summary":null,"term":"GO:0000472"},{"annotations":[73350],"is_not":false,"summary":null,"term":"GO:0034462"}],"cellular_component":[{"annotations":[73348],"is_not":false,"summary":null,"term":"GO:0005730"}],"molecular_function":[{"annotations":[73349],"is_not":false,"summary":null,"term":"GO:0003723"}]},"dbxrefs":["EnsemblGenomes-Tr:EEB09325","InterPro:IPR035979","InterPro:IPR012677","InterPro:IPR000504","InterPro:IPR039119","InterPro:IPR034353","GOA:B6K721","EnsemblGenomes-Gn:SJAG_04524","UniProtKB/TrEMBL:B6K721"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":109,"start":1}},{"range":{"end":328,"start":265}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"mdm35","uniquename":"SJAG_06440"},{"name":"prp31","uniquename":"SJAG_04529"},{"name":"rud3","uniquename":"SJAG_04528"},{"name":"pac1","uniquename":"SJAG_04527"},{"uniquename":"SJAG_04525"},{"name":"esf2","uniquename":"SJAG_04524"},{"uniquename":"SJAG_04523"},{"name":"rga4","uniquename":"SJAG_04522"},{"uniquename":"SJAG_04521"},{"name":"apc13","uniquename":"SJAG_04520"},{"uniquename":"SJAG_04519"}],"genes_by_uniquename":{"HGNC:17369":null,"SJAG_04524":null,"SPBC28E12.05":null,"YNR054C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"RNA recognition motif","id":"PF00076","interpro_description":"RNA recognition motif domain","interpro_id":"IPR000504","interpro_name":"RRM_dom","locations":[{"end":202,"start":122}],"match_end":202,"match_start":122,"name":"RRM_1"},{"dbname":"CDD","description":"RRM_ABT1_like","id":"cd12263","interpro_description":"ABT1/ESF2, RNA recognition motif","interpro_id":"IPR034353","interpro_name":"ABT1/ESF2_RRM","locations":[{"end":217,"start":120}],"match_end":217,"match_start":120,"name":"RRM_ABT1_like"},{"dbname":"PROSITE_PROFILES","description":"Eukaryotic RNA Recognition Motif (RRM) profile.","id":"PS50102","interpro_description":"RNA recognition motif domain","interpro_id":"IPR000504","interpro_name":"RRM_dom","locations":[{"end":202,"start":120}],"match_end":202,"match_start":120,"name":"RRM"},{"dbname":"SMART","id":"SM00360","interpro_description":"RNA recognition motif domain","interpro_id":"IPR000504","interpro_name":"RRM_dom","locations":[{"end":206,"start":121}],"match_end":206,"match_start":121,"name":"rrm1_1"},{"dbname":"SUPERFAMILY","id":"SSF54928","interpro_description":"RNA-binding domain superfamily","interpro_id":"IPR035979","interpro_name":"RBD_domain_sf","locations":[{"end":202,"start":62}],"match_end":202,"match_start":62,"name":"RNA-binding domain, RBD"},{"dbname":"GENE3D","id":"G3DSA:3.30.70.330","interpro_description":"Nucleotide-binding alpha-beta plait domain superfamily","interpro_id":"IPR012677","interpro_name":"Nucleotide-bd_a/b_plait_sf","locations":[{"end":205,"start":50}],"match_end":205,"match_start":50},{"dbname":"PANTHER","id":"PTHR12311","interpro_description":"ABT1/Esf2","interpro_id":"IPR039119","interpro_name":"ABT1/Esf2","locations":[{"end":324,"start":44}],"match_end":324,"match_start":44,"name":"ACTIVATOR OF BASAL TRANSCRIPTION 1"},{"dbname":"COILS","id":"Coil","locations":[{"end":279,"start":236}],"match_end":279,"match_start":236,"name":"Coil"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":109,"start":1},{"end":328,"start":265}],"match_end":328,"match_start":1,"name":"disorder_prediction"},{"dbname":"MOBIDB-Negative-Polyelectrolyte","description":"consensus disorder prediction","id":"mobidb-lite-Negative-Polyelectrolyte","locations":[{"end":25,"start":12},{"end":67,"start":56}],"match_end":67,"match_start":12,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polyampholyte","description":"consensus disorder prediction","id":"mobidb-lite-Polyampholyte","locations":[{"end":49,"start":26}],"match_end":49,"match_start":26,"name":"disorder_prediction"},{"dbname":"MOBIDB-Positive-Polyelectrolyte","description":"consensus disorder prediction","id":"mobidb-lite-Positive-Polyelectrolyte","locations":[{"end":102,"start":93}],"match_end":102,"match_start":93,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.3","end_pos":691857,"start_pos":690871,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":22,"start":11}},{"range":{"end":74,"start":57}},{"range":{"end":104,"start":90}}],"name":"esf2","ortholog_annotations":[{"gene_uniquename":"SJAG_04524","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:17369","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04524","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC28E12.05","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04524","ortholog_taxonid":4932,"ortholog_uniquename":"YNR054C","reference_uniquename":"PMID:29761456"}],"product":"U3 snoRNP-associated protein Esf2","references_by_uniquename":{"GO_REF:0000033":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0003723"]}},"subset_termids":["GO:0065003","GO:0005730","GO:0042254","GO:0005634"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000447":null,"GO:0000472":null,"GO:0000480":null,"GO:0003723":null,"GO:0005730":null,"GO:0034462":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04524.1"],"transcripts_by_uniquename":{"SJAG_04524.1":null},"uniprot_identifier":"B6K721","uniquename":"SJAG_04524"}


id: SJAG_04525
data:
  {"chains":[{"assigned_by":"UniProtKB","range":{"end":260,"start":19}}],"cv_annotations":{"sequence":[{"annotations":[81099],"is_not":false,"summary":null,"term":"SO:0000418"}]},"dbxrefs":["EnsemblGenomes-Gn:SJAG_04525","EnsemblGenomes-Tr:EEB09326","UniProtKB/TrEMBL:B6K722","InterPro:IPR018466"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":159,"start":123}},{"range":{"end":204,"start":173}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"rti1","uniquename":"SJAG_04530"},{"name":"mdm35","uniquename":"SJAG_06440"},{"name":"prp31","uniquename":"SJAG_04529"},{"name":"rud3","uniquename":"SJAG_04528"},{"name":"pac1","uniquename":"SJAG_04527"},{"uniquename":"SJAG_04525"},{"name":"esf2","uniquename":"SJAG_04524"},{"uniquename":"SJAG_04523"},{"name":"rga4","uniquename":"SJAG_04522"},{"uniquename":"SJAG_04521"},{"name":"apc13","uniquename":"SJAG_04520"}],"genes_by_uniquename":{"SJAG_04525":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Kre9/KNH-like N-terminal Ig-like domain","id":"PF10342","interpro_description":"Yeast cell wall synthesis Kre9/Knh1-like, N-terminal","interpro_id":"IPR018466","interpro_name":"Kre9/Knh1-like_N","locations":[{"end":113,"start":23}],"match_end":113,"match_start":23,"name":"Kre9_KNH"},{"dbname":"PANTHER","id":"PTHR35185","interpro_description":"GPI-anchored Adhesion Regulator","interpro_id":"IPR052479","interpro_name":"GPI-anchor_Adhesion_Reg","locations":[{"end":231,"start":1}],"match_end":231,"match_start":1,"name":"SERINE/THREONINE-RICH PROTEIN ADG2-RELATED"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":159,"start":123},{"end":204,"start":173}],"match_end":204,"match_start":123,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.3","end_pos":690609,"start_pos":689827,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":234,"start":116}}],"product":"conserved fungal cell surface protein, Kre9/Knh1 family","references_by_uniquename":{"PMID:36408920":null},"signal_peptide":{"assigned_by":"UniProtKB","evidence":"ECO:0000256","feature_type":"signal peptide","range":{"end":18,"start":1},"reference":null,"termid":"SO:0000418"},"split_by_parent_groups":{},"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"SO:0000418":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04525.1"],"transcripts_by_uniquename":{"SJAG_04525.1":null},"uniprot_identifier":"B6K722","uniquename":"SJAG_04525"}


id: SJAG_04527
data:
  {"cv_annotations":{"biological_process":[{"annotations":[102484],"is_not":false,"summary":null,"term":"GO:0106410"},{"annotations":[102485],"is_not":false,"summary":null,"term":"GO:0000956"},{"annotations":[77048],"is_not":false,"summary":null,"term":"GO:0006364"},{"annotations":[102488],"is_not":false,"summary":null,"term":"GO:0030847"},{"annotations":[102489],"is_not":false,"summary":null,"term":"GO:0034474"},{"annotations":[77046],"is_not":false,"summary":null,"term":"GO:0034475"}],"cellular_component":[{"annotations":[102481],"is_not":false,"summary":null,"term":"GO:0005730"},{"annotations":[77045],"is_not":false,"summary":null,"term":"GO:0005654"}],"molecular_function":[{"annotations":[65430],"is_not":false,"summary":null,"term":"GO:0003725"},{"annotations":[102493],"is_not":false,"summary":null,"term":"GO:0000182"},{"annotations":[77047],"is_not":false,"summary":null,"term":"GO:0004525"},{"annotations":[102495],"is_not":false,"summary":null,"term":"GO:0035613"}]},"dbxrefs":["InterPro:IPR036389","UniProtKB/TrEMBL:B6K723","GOA:B6K723","EnsemblGenomes-Gn:SJAG_04527","InterPro:IPR000999","InterPro:IPR014720","EnsemblGenomes-Tr:EEB09327"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":37,"start":1}},{"range":{"end":151,"start":132}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"npa3","uniquename":"SJAG_04531"},{"name":"rti1","uniquename":"SJAG_04530"},{"name":"mdm35","uniquename":"SJAG_06440"},{"name":"prp31","uniquename":"SJAG_04529"},{"name":"rud3","uniquename":"SJAG_04528"},{"name":"pac1","uniquename":"SJAG_04527"},{"uniquename":"SJAG_04525"},{"name":"esf2","uniquename":"SJAG_04524"},{"uniquename":"SJAG_04523"},{"name":"rga4","uniquename":"SJAG_04522"},{"uniquename":"SJAG_04521"}],"genes_by_uniquename":{"HGNC:17904":null,"SJAG_04527":null,"SPBC119.11c":null,"YMR239C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Double-stranded RNA binding motif","id":"PF00035","interpro_description":"Double-stranded RNA-binding domain","interpro_id":"IPR014720","interpro_name":"dsRBD_dom","locations":[{"end":370,"start":308}],"match_end":370,"match_start":308,"name":"dsrm"},{"dbname":"PFAM","description":"Ribonuclease III domain","id":"PF00636","interpro_description":"Ribonuclease III domain","interpro_id":"IPR000999","interpro_name":"RNase_III_dom","locations":[{"end":278,"start":188}],"match_end":278,"match_start":188,"name":"Ribonuclease_3"},{"dbname":"CDD","description":"DSRM_RNT1p-like","id":"cd19876","interpro_description":"Rnt1/Pac1, double-stranded RNA binding domain, fungi","interpro_id":"IPR044449","interpro_name":"Rnt1/Pac1_DSRM_fungi","locations":[{"end":368,"start":304}],"match_end":368,"match_start":304,"name":"DSRM_RNT1p-like"},{"dbname":"CDD","description":"RIBOc","id":"cd00593","interpro_description":"Ribonuclease III domain","interpro_id":"IPR000999","interpro_name":"RNase_III_dom","locations":[{"end":296,"start":157}],"match_end":296,"match_start":157,"name":"RIBOc"},{"dbname":"PROSITE_PATTERNS","description":"Ribonuclease III family signature.","id":"PS00517","interpro_description":"Ribonuclease III domain","interpro_id":"IPR000999","interpro_name":"RNase_III_dom","locations":[{"end":196,"start":188}],"match_end":196,"match_start":188,"name":"RNASE_3_1"},{"dbname":"PROSITE_PROFILES","description":"Double stranded RNA-binding domain (dsRBD) profile.","id":"PS50137","interpro_description":"Double-stranded RNA-binding domain","interpro_id":"IPR014720","interpro_name":"dsRBD_dom","locations":[{"end":372,"start":336}],"match_end":372,"match_start":336,"name":"DS_RBD"},{"dbname":"PROSITE_PROFILES","description":"Ribonuclease III family domain profile.","id":"PS50142","interpro_description":"Ribonuclease III domain","interpro_id":"IPR000999","interpro_name":"RNase_III_dom","locations":[{"end":278,"start":155}],"match_end":278,"match_start":155,"name":"RNASE_3_2"},{"dbname":"SMART","id":"SM00358","interpro_description":"Double-stranded RNA-binding domain","interpro_id":"IPR014720","interpro_name":"dsRBD_dom","locations":[{"end":371,"start":307}],"match_end":371,"match_start":307,"name":"DRBM_3"},{"dbname":"SMART","id":"SM00535","interpro_description":"Ribonuclease III domain","interpro_id":"IPR000999","interpro_name":"RNase_III_dom","locations":[{"end":299,"start":157}],"match_end":299,"match_start":157,"name":"riboneu5"},{"dbname":"FUNFAM","description":"Ribonuclease 3","id":"G3DSA:1.10.1520.10:FF:000001","locations":[{"end":298,"start":150}],"match_end":298,"match_start":150},{"dbname":"SUPERFAMILY","id":"SSF54768","locations":[{"end":370,"start":260}],"match_end":370,"match_start":260,"name":"dsRNA-binding domain-like"},{"dbname":"SUPERFAMILY","id":"SSF69065","interpro_description":"Ribonuclease III, endonuclease domain superfamily","interpro_id":"IPR036389","interpro_name":"RNase_III_sf","locations":[{"end":297,"start":153}],"match_end":297,"match_start":153,"name":"RNase III domain-like"},{"dbname":"GENE3D","id":"G3DSA:3.30.160.20","locations":[{"end":377,"start":301}],"match_end":377,"match_start":301},{"dbname":"GENE3D","id":"G3DSA:1.10.1520.10","interpro_description":"Ribonuclease III, endonuclease domain superfamily","interpro_id":"IPR036389","interpro_name":"RNase_III_sf","locations":[{"end":299,"start":144}],"match_end":299,"match_start":144,"name":"Ribonuclease III domain"},{"dbname":"PANTHER","id":"PTHR11207","locations":[{"end":375,"start":86}],"match_end":375,"match_start":86,"name":"RIBONUCLEASE III"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":37,"start":1},{"end":151,"start":132}],"match_end":151,"match_start":1,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polyampholyte","description":"consensus disorder prediction","id":"mobidb-lite-Polyampholyte","locations":[{"end":12,"start":1}],"match_end":12,"match_start":1,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.3","end_pos":688827,"start_pos":687694,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":60,"start":42}},{"range":{"end":118,"start":94}},{"range":{"end":157,"start":146}}],"name":"pac1","ortholog_annotations":[{"gene_uniquename":"SJAG_04527","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:17904","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04527","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC119.11c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04527","ortholog_taxonid":4932,"ortholog_uniquename":"YMR239C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04527","ortholog_taxonid":4932,"ortholog_uniquename":"YMR239C","reference_uniquename":"PMID:26896847"}],"product":"double-strand-specific ribonuclease Pac1","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0000182","GO:0003725","GO:0035613"],"not-binding":["GO:0004525"]}},"subset_termids":["GO:0016074","GO:0016788","GO:0006351","GO:0005654","GO:0005730","GO:0005634","GO:0016071","GO:0042254","GO:0016073","GO:0140098"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000182":null,"GO:0000956":null,"GO:0003725":null,"GO:0004525":null,"GO:0005654":null,"GO:0005730":null,"GO:0006364":null,"GO:0030847":null,"GO:0034474":null,"GO:0034475":null,"GO:0035613":null,"GO:0106410":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04527.1"],"transcripts_by_uniquename":{"SJAG_04527.1":null},"uniprot_identifier":"B6K723","uniquename":"SJAG_04527"}


id: SJAG_04528
data:
  {"coiled_coil_coords":[{"range":{"end":53,"start":33}},{"range":{"end":122,"start":95}},{"range":{"end":210,"start":134}},{"range":{"end":277,"start":253}},{"range":{"end":316,"start":282}}],"cv_annotations":{"biological_process":[{"annotations":[102497],"is_not":false,"summary":null,"term":"GO:0006888"},{"annotations":[102498],"is_not":false,"summary":null,"term":"GO:0007030"}],"cellular_component":[{"annotations":[102496],"is_not":false,"summary":null,"term":"GO:0005796"}],"mondo":[{"annotations":[86285],"is_not":false,"summary":null,"term":"MONDO:0008701"},{"annotations":[85558],"is_not":false,"summary":null,"term":"MONDO:0100325"}]},"dbxrefs":["EnsemblGenomes-Gn:SJAG_04528","UniProtKB/TrEMBL:B6K724","InterPro:IPR000237","InterPro:IPR019459","EnsemblGenomes-Tr:EEB09328"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":97,"start":1}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"den11","uniquename":"SJAG_04532"},{"name":"npa3","uniquename":"SJAG_04531"},{"name":"rti1","uniquename":"SJAG_04530"},{"name":"mdm35","uniquename":"SJAG_06440"},{"name":"prp31","uniquename":"SJAG_04529"},{"name":"rud3","uniquename":"SJAG_04528"},{"name":"pac1","uniquename":"SJAG_04527"},{"uniquename":"SJAG_04525"},{"name":"esf2","uniquename":"SJAG_04524"},{"uniquename":"SJAG_04523"},{"name":"rga4","uniquename":"SJAG_04522"}],"genes_by_uniquename":{"HGNC:12305":null,"SJAG_04528":null,"SPBC119.12":null,"YOR216C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"GRAB domain","id":"PF10375","interpro_description":"GRIP-related Arf-binding domain","interpro_id":"IPR019459","interpro_name":"GRAB","locations":[{"end":400,"start":353}],"match_end":400,"match_start":353,"name":"GRAB"},{"dbname":"PROSITE_PROFILES","description":"GRIP domain profile.","id":"PS50913","interpro_description":"GRIP domain","interpro_id":"IPR000237","interpro_name":"GRIP_dom","locations":[{"end":403,"start":352}],"match_end":403,"match_start":352,"name":"GRIP"},{"dbname":"PANTHER","id":"PTHR18921","locations":[{"end":421,"start":199}],"match_end":421,"match_start":199,"name":"MYOSIN HEAVY CHAIN - RELATED"},{"dbname":"COILS","id":"Coil","locations":[{"end":53,"start":33},{"end":122,"start":95},{"end":210,"start":134},{"end":277,"start":253},{"end":316,"start":282}],"match_end":316,"match_start":33,"name":"Coil"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":97,"start":1}],"match_end":97,"match_start":1,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polar","description":"consensus disorder prediction","id":"mobidb-lite-Polar","locations":[{"end":89,"start":76}],"match_end":89,"match_start":76,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polyampholyte","description":"consensus disorder prediction","id":"mobidb-lite-Polyampholyte","locations":[{"end":10,"start":1},{"end":55,"start":37}],"match_end":55,"match_start":1,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.3","end_pos":687349,"start_pos":686066,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":53,"start":35}},{"range":{"end":426,"start":412}}],"name":"rud3","ortholog_annotations":[{"gene_uniquename":"SJAG_04528","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:12305","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04528","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC119.12","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04528","ortholog_taxonid":4932,"ortholog_uniquename":"YOR216C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04528","ortholog_taxonid":4932,"ortholog_uniquename":"YOR216C","reference_uniquename":"PMID:26896847"}],"product":"Golgi matrix protein Rud3","references_by_uniquename":{"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{},"subset_termids":["GO:0005794","GO:0016192","MONDO:0005497"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005796":null,"GO:0006888":null,"GO:0007030":null,"MONDO:0008701":null,"MONDO:0100325":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04528.1"],"transcripts_by_uniquename":{"SJAG_04528.1":null},"uniprot_identifier":"B6K724","uniquename":"SJAG_04528"}


id: SJAG_04529
data:
  {"cv_annotations":{"biological_process":[{"annotations":[75417],"is_not":false,"summary":null,"term":"GO:0045292"},{"annotations":[63407],"is_not":false,"summary":null,"term":"GO:0000244"}],"cellular_component":[{"annotations":[75419],"is_not":false,"summary":null,"term":"GO:0071011"},{"annotations":[75418],"is_not":false,"summary":null,"term":"GO:0005687"},{"annotations":[63409],"is_not":false,"summary":null,"term":"GO:0046540"}],"mondo":[{"annotations":[86426],"is_not":false,"summary":null,"term":"MONDO:0010828"}]},"dbxrefs":["InterPro:IPR029012","EnsemblGenomes-Gn:SJAG_04529","EnsemblGenomes-Tr:EEB09329","InterPro:IPR019175","InterPro:IPR036070","InterPro:IPR042239","InterPro:IPR027105","UniProtKB/TrEMBL:B6K725","InterPro:IPR012976","GOA:B6K725","InterPro:IPR002687"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":60,"start":1}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"cym1","uniquename":"SJAG_04533"},{"name":"den11","uniquename":"SJAG_04532"},{"name":"npa3","uniquename":"SJAG_04531"},{"name":"rti1","uniquename":"SJAG_04530"},{"name":"mdm35","uniquename":"SJAG_06440"},{"name":"prp31","uniquename":"SJAG_04529"},{"name":"rud3","uniquename":"SJAG_04528"},{"name":"pac1","uniquename":"SJAG_04527"},{"uniquename":"SJAG_04525"},{"name":"esf2","uniquename":"SJAG_04524"},{"uniquename":"SJAG_04523"}],"genes_by_uniquename":{"HGNC:15446":null,"SJAG_04529":null,"SPBC119.13c":null,"YGR091W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"snoRNA binding domain, fibrillarin","id":"PF01798","interpro_description":"Nop domain","interpro_id":"IPR002687","interpro_name":"Nop_dom","locations":[{"end":335,"start":109}],"match_end":335,"match_start":109,"name":"Nop"},{"dbname":"PFAM","description":"Prp31 C terminal domain","id":"PF09785","interpro_description":"Prp31 C-terminal","interpro_id":"IPR019175","interpro_name":"Prp31_C","locations":[{"end":462,"start":345}],"match_end":462,"match_start":345,"name":"Prp31_C"},{"dbname":"PROSITE_PROFILES","description":"Nop domain profile.","id":"PS51358","interpro_description":"Nop domain","interpro_id":"IPR002687","interpro_name":"Nop_dom","locations":[{"end":338,"start":220}],"match_end":338,"match_start":220,"name":"NOP"},{"dbname":"SMART","id":"SM00931","interpro_description":"NOSIC","interpro_id":"IPR012976","interpro_name":"NOSIC","locations":[{"end":152,"start":100}],"match_end":152,"match_start":100,"name":"NOSIC_2"},{"dbname":"FUNFAM","description":"U4/U6 small nuclear ribonucleoprotein Prp31","id":"G3DSA:1.10.246.90:FF:000002","locations":[{"end":345,"start":221}],"match_end":345,"match_start":221},{"dbname":"FUNFAM","description":"U4/U6 small nuclear ribonucleoprotein PRP31","id":"G3DSA:1.10.287.4070:FF:000003","locations":[{"end":220,"start":83}],"match_end":220,"match_start":83},{"dbname":"SUPERFAMILY","id":"SSF89124","interpro_description":"Nop domain superfamily","interpro_id":"IPR036070","interpro_name":"Nop_dom_sf","locations":[{"end":337,"start":93}],"match_end":337,"match_start":93,"name":"Nop domain"},{"dbname":"GENE3D","id":"G3DSA:1.10.246.90","interpro_description":"Nop, C-terminal domain","interpro_id":"IPR042239","interpro_name":"Nop_C","locations":[{"end":344,"start":221}],"match_end":344,"match_start":221,"name":"Nop domain"},{"dbname":"GENE3D","id":"G3DSA:1.10.287.4070","locations":[{"end":220,"start":82}],"match_end":220,"match_start":82},{"dbname":"PANTHER","id":"PTHR13904","interpro_description":"U4/U6 small nuclear ribonucleoprotein Prp31","interpro_id":"IPR027105","interpro_name":"Prp31","locations":[{"end":486,"start":1}],"match_end":486,"match_start":1,"name":"PRE-MRNA SPLICING FACTOR PRP31"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":60,"start":1}],"match_end":60,"match_start":1,"name":"disorder_prediction"},{"dbname":"MOBIDB-Low-complexity","description":"consensus disorder prediction","id":"mobidb-lite-Low-complexity","locations":[{"end":11,"start":1},{"end":44,"start":35}],"match_end":44,"match_start":1,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polar","description":"consensus disorder prediction","id":"mobidb-lite-Polar","locations":[{"end":60,"start":48}],"match_end":60,"match_start":48,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.3","end_pos":685910,"start_pos":684345,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":25,"start":1}},{"range":{"end":44,"start":34}},{"range":{"end":179,"start":166}},{"range":{"end":367,"start":350}},{"range":{"end":409,"start":396}},{"range":{"end":440,"start":419}}],"name":"prp31","ortholog_annotations":[{"gene_uniquename":"SJAG_04529","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:15446","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04529","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC119.13c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04529","ortholog_taxonid":4932,"ortholog_uniquename":"YGR091W","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04529","ortholog_taxonid":4932,"ortholog_uniquename":"YGR091W","reference_uniquename":"PMID:26896847"}],"product":"U4/U6 x U5 tri-snRNP complex subunit Prp31","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{},"subset_termids":["GO:0065003","MONDO:0005066","GO:0016071","GO:0005634","MONDO:0004736","MONDO:0005328"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000244":null,"GO:0005687":null,"GO:0045292":null,"GO:0046540":null,"GO:0071011":null,"MONDO:0010828":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04529.1"],"transcripts_by_uniquename":{"SJAG_04529.1":null},"uniprot_identifier":"B6K725","uniquename":"SJAG_04529"}


id: SJAG_04530
data:
  {"cv_annotations":{"biological_process":[{"annotations":[65784],"is_not":false,"summary":null,"term":"GO:0000730"},{"annotations":[77333],"is_not":false,"summary":null,"term":"GO:0045002"},{"annotations":[77336],"is_not":false,"summary":null,"term":"GO:0006312"}],"cellular_component":[{"annotations":[102505],"is_not":false,"summary":null,"term":"GO:0000228"}],"molecular_function":[{"annotations":[102511],"is_not":false,"summary":null,"term":"GO:0000150"},{"annotations":[102512],"is_not":false,"summary":null,"term":"GO:0003697"}]},"dbxrefs":["EnsemblGenomes-Tr:EEB09330","InterPro:IPR004585","InterPro:IPR042525","InterPro:IPR007232","InterPro:IPR041247","EnsemblGenomes-Gn:SJAG_04530","GOA:B6K726","UniProtKB/TrEMBL:B6K726"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":277,"start":171}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"uniquename":"SJAG_04535"},{"name":"rpl38a","uniquename":"SJAG_04534"},{"name":"cym1","uniquename":"SJAG_04533"},{"name":"den11","uniquename":"SJAG_04532"},{"name":"npa3","uniquename":"SJAG_04531"},{"name":"rti1","uniquename":"SJAG_04530"},{"name":"mdm35","uniquename":"SJAG_06440"},{"name":"prp31","uniquename":"SJAG_04529"},{"name":"rud3","uniquename":"SJAG_04528"},{"name":"pac1","uniquename":"SJAG_04527"},{"uniquename":"SJAG_04525"}],"genes_by_uniquename":{"HGNC:9824":null,"SJAG_04530":null,"SPBC119.14":null,"YML032C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Rad52/22 family double-strand break repair protein","id":"PF04098","interpro_description":"Rad52 family","interpro_id":"IPR041247","interpro_name":"Rad52_fam","locations":[{"end":176,"start":25}],"match_end":176,"match_start":25,"name":"Rad52_Rad22"},{"dbname":"FUNFAM","description":"DNA repair protein RAD52 homolog","id":"G3DSA:3.30.390.80:FF:000001","locations":[{"end":171,"start":20}],"match_end":171,"match_start":20},{"dbname":"SUPERFAMILY","id":"SSF54768","locations":[{"end":188,"start":19}],"match_end":188,"match_start":19,"name":"dsRNA-binding domain-like"},{"dbname":"GENE3D","id":"G3DSA:3.30.390.80","interpro_description":"DNA repair protein Rad52/59/22 superfamily","interpro_id":"IPR042525","interpro_name":"Rad52_Rad59_Rad22_sf","locations":[{"end":171,"start":20}],"match_end":171,"match_start":20,"name":"DNA repair protein Rad52/59/22"},{"dbname":"PANTHER","id":"PTHR12132","interpro_description":"DNA repair protein Rad52/59/22","interpro_id":"IPR007232","interpro_name":"Rad52_Rad59_Rad22","locations":[{"end":315,"start":11}],"match_end":315,"match_start":11,"name":"DNA REPAIR AND RECOMBINATION PROTEIN RAD52, RAD59"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":277,"start":171}],"match_end":277,"match_start":171,"name":"disorder_prediction"},{"dbname":"MOBIDB-Low-complexity","description":"consensus disorder prediction","id":"mobidb-lite-Low-complexity","locations":[{"end":215,"start":200}],"match_end":215,"match_start":200,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polar","description":"consensus disorder prediction","id":"mobidb-lite-Polar","locations":[{"end":199,"start":189},{"end":252,"start":216}],"match_end":252,"match_start":189,"name":"disorder_prediction"},{"dbname":"NCBIFAM","description":"DNA repair protein, RAD52 family","id":"TIGR00607","interpro_description":"DNA recombination/repair protein Rad52","interpro_id":"IPR004585","interpro_name":"DNA_recomb/repair_Rad52","locations":[{"end":185,"start":27}],"match_end":185,"match_start":27,"name":"rad52"}],"location":{"chromosome_name":"supercont5.3","end_pos":683339,"start_pos":682053,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":49,"start":40}},{"range":{"end":214,"start":199}},{"range":{"end":299,"start":284}}],"name":"rti1","ortholog_annotations":[{"gene_uniquename":"SJAG_04530","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:9824","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04530","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC119.14","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04530","ortholog_taxonid":4932,"ortholog_uniquename":"YML032C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04530","ortholog_taxonid":4932,"ortholog_uniquename":"YML032C","reference_uniquename":"PMID:26896847"}],"product":"Rad22 homolog Rti1","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0003697"],"not-binding":["GO:0000150"]}},"subset_termids":["GO:0006281","GO:0005694","GO:0005634","GO:0140097","GO:0006310","GO:0065003"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000150":null,"GO:0000228":null,"GO:0000730":null,"GO:0003697":null,"GO:0006312":null,"GO:0045002":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04530.1"],"transcripts_by_uniquename":{"SJAG_04530.1":null},"uniprot_identifier":"B6K726","uniquename":"SJAG_04530"}


id: SJAG_04531
data:
  {"coiled_coil_coords":[{"range":{"end":291,"start":253}}],"cv_annotations":{"biological_process":[{"annotations":[102514],"is_not":false,"summary":null,"term":"GO:1990114"}],"cellular_component":[{"annotations":[102513],"is_not":false,"summary":null,"term":"GO:0005829"}],"molecular_function":[{"annotations":[102515],"is_not":false,"summary":null,"term":"GO:0016887"},{"annotations":[76384],"is_not":false,"summary":null,"term":"GO:0003924"}]},"dbxrefs":["InterPro:IPR027417","InterPro:IPR030230","InterPro:IPR004130","EnsemblGenomes-Tr:EEB09331","EnsemblGenomes-Gn:SJAG_04531","UniProtKB/TrEMBL:B6K727","GOA:B6K727"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":336,"start":279}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"tho5","uniquename":"SJAG_04536"},{"uniquename":"SJAG_04535"},{"name":"rpl38a","uniquename":"SJAG_04534"},{"name":"cym1","uniquename":"SJAG_04533"},{"name":"den11","uniquename":"SJAG_04532"},{"name":"npa3","uniquename":"SJAG_04531"},{"name":"rti1","uniquename":"SJAG_04530"},{"name":"mdm35","uniquename":"SJAG_06440"},{"name":"prp31","uniquename":"SJAG_04529"},{"name":"rud3","uniquename":"SJAG_04528"},{"name":"pac1","uniquename":"SJAG_04527"}],"genes_by_uniquename":{"HGNC:17030":null,"SJAG_04531":null,"SPBC119.15":null,"YJR072C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Conserved hypothetical ATP binding protein","id":"PF03029","interpro_description":"GPN-loop GTPase","interpro_id":"IPR004130","interpro_name":"Gpn","locations":[{"end":261,"start":13}],"match_end":261,"match_start":13,"name":"ATP_bind_1"},{"dbname":"CDD","description":"GPN1","id":"cd17870","interpro_description":"GPN-loop GTPase 1","interpro_id":"IPR030230","interpro_name":"Gpn1/Npa3/XAB1","locations":[{"end":258,"start":9}],"match_end":258,"match_start":9,"name":"GPN1"},{"dbname":"PRINTS","description":"Transforming protein P21 ras signature","id":"PR00449","locations":[{"end":30,"start":9},{"end":182,"start":169},{"end":260,"start":238}],"match_end":260,"match_start":9,"name":"RASTRNSFRMNG"},{"dbname":"FUNFAM","description":"GPN-loop GTPase","id":"G3DSA:3.40.50.300:FF:000579","locations":[{"end":275,"start":8}],"match_end":275,"match_start":8},{"dbname":"SUPERFAMILY","id":"SSF52540","interpro_description":"P-loop containing nucleoside triphosphate hydrolase","interpro_id":"IPR027417","interpro_name":"P-loop_NTPase","locations":[{"end":261,"start":10}],"match_end":261,"match_start":10,"name":"P-loop containing nucleoside triphosphate hydrolases"},{"dbname":"GENE3D","id":"G3DSA:3.40.50.300","interpro_description":"P-loop containing nucleoside triphosphate hydrolase","interpro_id":"IPR027417","interpro_name":"P-loop_NTPase","locations":[{"end":275,"start":8}],"match_end":275,"match_start":8},{"dbname":"PANTHER","id":"PTHR21231","interpro_description":"GPN-loop GTPase","interpro_id":"IPR004130","interpro_name":"Gpn","locations":[{"end":287,"start":12}],"match_end":287,"match_start":12,"name":"XPA-BINDING PROTEIN 1-RELATED"},{"dbname":"COILS","id":"Coil","locations":[{"end":291,"start":253}],"match_end":291,"match_start":253,"name":"Coil"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":336,"start":279}],"match_end":336,"match_start":279,"name":"disorder_prediction"},{"dbname":"MOBIDB-Negative-Polyelectrolyte","description":"consensus disorder prediction","id":"mobidb-lite-Negative-Polyelectrolyte","locations":[{"end":332,"start":310}],"match_end":332,"match_start":310,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polyampholyte","description":"consensus disorder prediction","id":"mobidb-lite-Polyampholyte","locations":[{"end":305,"start":279}],"match_end":305,"match_start":279,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.3","end_pos":681752,"start_pos":680546,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":158,"start":148}},{"range":{"end":228,"start":217}},{"range":{"end":271,"start":253}},{"range":{"end":292,"start":273}}],"name":"npa3","ortholog_annotations":[{"gene_uniquename":"SJAG_04531","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:17030","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04531","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC119.15","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04531","ortholog_taxonid":4932,"ortholog_uniquename":"YJR072C","reference_uniquename":"PMID:29761456"}],"product":"RNA polymerase II binding AAA family ATPase Npa3","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0016887","GO:0003924"]}},"subset_termids":["GO:0005829","GO:0065003","GO:0003924","GO:0016887"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0003924":null,"GO:0005829":null,"GO:0016887":null,"GO:1990114":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04531.1"],"transcripts_by_uniquename":{"SJAG_04531.1":null},"uniprot_identifier":"B6K727","uniquename":"SJAG_04531"}


id: SJAG_04532
data:
  {"cv_annotations":{"cellular_component":[{"annotations":[102518],"is_not":false,"summary":null,"term":"GO:0005783"},{"annotations":[102519],"is_not":false,"summary":null,"term":"GO:0005794"},{"annotations":[74387],"is_not":false,"summary":null,"term":"GO:0005811"}]},"dbxrefs":["GOA:B6K728","InterPro:IPR018626","UniProtKB/TrEMBL:B6K728","EnsemblGenomes-Tr:EEB09332","EnsemblGenomes-Gn:SJAG_04532"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"rec27","uniquename":"SJAG_05333"},{"name":"tho5","uniquename":"SJAG_04536"},{"uniquename":"SJAG_04535"},{"name":"rpl38a","uniquename":"SJAG_04534"},{"name":"cym1","uniquename":"SJAG_04533"},{"name":"den11","uniquename":"SJAG_04532"},{"name":"npa3","uniquename":"SJAG_04531"},{"name":"rti1","uniquename":"SJAG_04530"},{"name":"mdm35","uniquename":"SJAG_06440"},{"name":"prp31","uniquename":"SJAG_04529"},{"name":"rud3","uniquename":"SJAG_04528"}],"genes_by_uniquename":{"HGNC:29472":null,"SJAG_04532":null,"SPBC119.16c":null,"YKL047W":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"DENN domain-containing protein 11","id":"PF09804","interpro_description":"Protein LCHN/Anr2","interpro_id":"IPR018626","interpro_name":"LCHN/Anr2","locations":[{"end":117,"start":30},{"end":240,"start":124}],"match_end":240,"match_start":30,"name":"DENND11"},{"dbname":"PANTHER","id":"PTHR28153","interpro_description":"Lipid Metabolism-Associated Protein","interpro_id":"IPR053056","interpro_name":"Lipid_Metab_Assoc_Protein","locations":[{"end":376,"start":293}],"match_end":376,"match_start":293,"name":"PROTEIN, PUTATIVE-RELATED"}],"location":{"chromosome_name":"supercont5.3","end_pos":680514,"start_pos":679258,"strand":"forward"},"name":"den11","ortholog_annotations":[{"gene_uniquename":"SJAG_04532","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:29472","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04532","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC119.16c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04532","ortholog_taxonid":4932,"ortholog_uniquename":"YKL047W","reference_uniquename":"PMID:29761456"}],"product":"DENN domain-like containing protein, implicated in vesicle formation/trafficking","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{},"subset_termids":["GO:0005794","GO:0005783"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005783":null,"GO:0005794":null,"GO:0005811":null},"tm_domain_coords":[{"assigned_by":"TMHMM","range":{"end":385,"start":363}}],"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04532.1"],"transcripts_by_uniquename":{"SJAG_04532.1":null},"uniprot_identifier":"B6K728","uniquename":"SJAG_04532"}


id: SJAG_04533
data:
  {"coiled_coil_coords":[{"range":{"end":532,"start":497}}],"cv_annotations":{"biological_process":[{"annotations":[102524],"is_not":false,"summary":null,"term":"GO:0006627"},{"annotations":[102525],"is_not":false,"summary":null,"term":"GO:0051603"}],"cellular_component":[{"annotations":[67107],"is_not":false,"summary":null,"term":"GO:0005758"},{"annotations":[78370],"is_not":false,"summary":null,"term":"GO:0005759"}],"molecular_function":[{"annotations":[67106],"is_not":false,"summary":null,"term":"GO:0046872"},{"annotations":[78371],"is_not":false,"summary":null,"term":"GO:0004222"}],"mondo":[{"annotations":[86678],"is_not":false,"summary":null,"term":"MONDO:0030318"}]},"dbxrefs":["InterPro:IPR011249","UniProtKB/TrEMBL:B6K729","InterPro:IPR013578","EnsemblGenomes-Tr:EEB09333","InterPro:IPR011765","GOA:B6K729","EnsemblGenomes-Gn:SJAG_04533","InterPro:IPR007863"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"stt4","uniquename":"SJAG_04537"},{"name":"rec27","uniquename":"SJAG_05333"},{"name":"tho5","uniquename":"SJAG_04536"},{"uniquename":"SJAG_04535"},{"name":"rpl38a","uniquename":"SJAG_04534"},{"name":"cym1","uniquename":"SJAG_04533"},{"name":"den11","uniquename":"SJAG_04532"},{"name":"npa3","uniquename":"SJAG_04531"},{"name":"rti1","uniquename":"SJAG_04530"},{"name":"mdm35","uniquename":"SJAG_06440"},{"name":"prp31","uniquename":"SJAG_04529"}],"genes_by_uniquename":{"HGNC:17663":null,"SJAG_04533":null,"SPBC119.17":null,"YDR430C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Peptidase M16 inactive domain","id":"PF05193","interpro_description":"Peptidase M16, C-terminal","interpro_id":"IPR007863","interpro_name":"Peptidase_M16_C","locations":[{"end":415,"start":229}],"match_end":415,"match_start":229,"name":"Peptidase_M16_C"},{"dbname":"PFAM","description":"PreP C-terminal domain","id":"PF22516","interpro_description":"Presequence protease, mitochondrial-type, C-terminal domain","interpro_id":"IPR055130","interpro_name":"PreP_C","locations":[{"end":959,"start":834}],"match_end":959,"match_start":834,"name":"PreP_C"},{"dbname":"PFAM","description":"Peptidase M16C associated","id":"PF08367","interpro_description":"Peptidase M16C associated","interpro_id":"IPR013578","interpro_name":"Peptidase_M16C_assoc","locations":[{"end":732,"start":486}],"match_end":732,"match_start":486,"name":"M16C_assoc"},{"dbname":"SMART","id":"SM01264","interpro_description":"Peptidase M16C associated","interpro_id":"IPR013578","interpro_name":"Peptidase_M16C_assoc","locations":[{"end":732,"start":486}],"match_end":732,"match_start":486,"name":"M16C_assoc_2"},{"dbname":"FUNFAM","description":"Presequence protease, mitochondrial","id":"G3DSA:3.30.830.10:FF:000011","locations":[{"end":276,"start":12}],"match_end":276,"match_start":12},{"dbname":"FUNFAM","description":"Mitochondrial presequence protease","id":"G3DSA:3.30.830.10:FF:000013","locations":[{"end":981,"start":797}],"match_end":981,"match_start":797},{"dbname":"FUNFAM","description":"Presequence protease, mitochondrial","id":"G3DSA:3.30.830.10:FF:000009","locations":[{"end":509,"start":278}],"match_end":509,"match_start":278},{"dbname":"SUPERFAMILY","id":"SSF63411","interpro_description":"Metalloenzyme, LuxS/M16 peptidase-like","interpro_id":"IPR011249","interpro_name":"Metalloenz_LuxS/M16","locations":[{"end":279,"start":32},{"end":784,"start":285},{"end":984,"start":808}],"match_end":984,"match_start":32,"name":"LuxS/MPP-like metallohydrolase"},{"dbname":"GENE3D","id":"G3DSA:3.30.830.10","locations":[{"end":276,"start":15},{"end":508,"start":279},{"end":980,"start":530}],"match_end":980,"match_start":15},{"dbname":"PANTHER","id":"PTHR43016","locations":[{"end":970,"start":29}],"match_end":970,"match_start":29,"name":"PRESEQUENCE PROTEASE"},{"dbname":"COILS","id":"Coil","locations":[{"end":532,"start":497}],"match_end":532,"match_start":497,"name":"Coil"}],"location":{"chromosome_name":"supercont5.3","end_pos":679112,"start_pos":676065,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":867,"start":855}}],"name":"cym1","ortholog_annotations":[{"gene_uniquename":"SJAG_04533","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:17663","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04533","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC119.17","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04533","ortholog_taxonid":4932,"ortholog_uniquename":"YDR430C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04533","ortholog_taxonid":4932,"ortholog_uniquename":"YDR430C","reference_uniquename":"PMID:26896847"}],"product":"mitochondrial metalloendopeptidase","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000044":null,"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0046872"],"not-binding":["GO:0004222"]}},"subset_termids":["GO:0008233","GO:0051604","GO:0005739","GO:0140096","MONDO:0005559","GO:0030163","GO:0006605","MONDO:0006025"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0004222":null,"GO:0005758":null,"GO:0005759":null,"GO:0006627":null,"GO:0046872":null,"GO:0051603":null,"MONDO:0030318":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04533.1"],"transcripts_by_uniquename":{"SJAG_04533.1":null},"uniprot_identifier":"B6K729","uniquename":"SJAG_04533"}


id: SJAG_04534
data:
  {"cv_annotations":{"biological_process":[{"annotations":[111418],"is_not":false,"summary":null,"term":"GO:0002181"},{"annotations":[75035],"is_not":false,"summary":null,"term":"GO:0022618"}],"cellular_component":[{"annotations":[75034],"is_not":false,"summary":null,"term":"GO:0022625"},{"annotations":[111416],"is_not":false,"summary":null,"term":"GO:0030684"}],"molecular_function":[{"annotations":[75033],"is_not":false,"summary":null,"term":"GO:0003735"}]},"dbxrefs":["EnsemblGenomes-Gn:SJAG_04534","EnsemblGenomes-Tr:EEB09334","InterPro:IPR038464","GOA:B6K730","InterPro:IPR002675","UniProtKB/TrEMBL:B6K730"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"ubp10","uniquename":"SJAG_04538"},{"name":"stt4","uniquename":"SJAG_04537"},{"name":"rec27","uniquename":"SJAG_05333"},{"name":"tho5","uniquename":"SJAG_04536"},{"uniquename":"SJAG_04535"},{"name":"rpl38a","uniquename":"SJAG_04534"},{"name":"cym1","uniquename":"SJAG_04533"},{"name":"den11","uniquename":"SJAG_04532"},{"name":"npa3","uniquename":"SJAG_04531"},{"name":"rti1","uniquename":"SJAG_04530"},{"name":"mdm35","uniquename":"SJAG_06440"}],"genes_by_uniquename":{"HGNC:10349":null,"SJAG_04534":null,"SPAC30D11.12":null,"SPBC577.02":null,"YLR325C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Ribosomal L38e protein family","id":"PF01781","interpro_description":"Large ribosomal subunit protein eL38","interpro_id":"IPR002675","interpro_name":"Ribosomal_eL38","locations":[{"end":65,"start":2}],"match_end":65,"match_start":2,"name":"Ribosomal_L38e"},{"dbname":"FUNFAM","description":"60S ribosomal protein L38","id":"G3DSA:3.30.720.90:FF:000001","locations":[{"end":68,"start":1}],"match_end":68,"match_start":1},{"dbname":"GENE3D","id":"G3DSA:3.30.720.90","interpro_description":"Large ribosomal subunit protein eL38 superfamily","interpro_id":"IPR038464","interpro_name":"Ribosomal_eL38_sf","locations":[{"end":68,"start":1}],"match_end":68,"match_start":1},{"dbname":"PANTHER","id":"PTHR10965","interpro_description":"Large ribosomal subunit protein eL38","interpro_id":"IPR002675","interpro_name":"Ribosomal_eL38","locations":[{"end":65,"start":1}],"match_end":65,"match_start":1,"name":"60S RIBOSOMAL PROTEIN L38"}],"location":{"chromosome_name":"supercont5.3","end_pos":675682,"start_pos":675422,"strand":"reverse"},"name":"rpl38a","ortholog_annotations":[{"gene_uniquename":"SJAG_04534","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:10349","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04534","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:10349","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04534","ortholog_taxonid":4896,"ortholog_uniquename":"SPAC30D11.12","reference_uniquename":"PMID:26896847"},{"gene_uniquename":"SJAG_04534","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC577.02","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04534","ortholog_taxonid":4932,"ortholog_uniquename":"YLR325C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04534","ortholog_taxonid":4932,"ortholog_uniquename":"YLR325C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04534","ortholog_taxonid":4932,"ortholog_uniquename":"YLR325C","reference_uniquename":"PMID:26896847"}],"product":"60S ribosomal protein L38","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0003735"]}},"subset_termids":["GO:0022626","GO:0002181","GO:0005829","GO:0005198","GO:0030684","GO:0065003"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0002181":null,"GO:0003735":null,"GO:0022618":null,"GO:0022625":null,"GO:0030684":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04534.1"],"transcripts_by_uniquename":{"SJAG_04534.1":null},"uniprot_identifier":"B6K730","uniquename":"SJAG_04534"}


id: SJAG_04535
data:
  {"cv_annotations":{"cellular_component":[{"annotations":[111424],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[111425],"is_not":false,"summary":null,"term":"GO:0005634"}],"molecular_function":[{"annotations":[63716],"is_not":false,"summary":null,"term":"GO:0008080"}]},"dbxrefs":["EnsemblGenomes-Tr:EEB09335","InterPro:IPR000182","InterPro:IPR039135","UniProtKB/TrEMBL:B6K731","EnsemblGenomes-Gn:SJAG_04535","GOA:B6K731","InterPro:IPR016181"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"txl1","uniquename":"SJAG_04539"},{"name":"ubp10","uniquename":"SJAG_04538"},{"name":"stt4","uniquename":"SJAG_04537"},{"name":"rec27","uniquename":"SJAG_05333"},{"name":"tho5","uniquename":"SJAG_04536"},{"uniquename":"SJAG_04535"},{"name":"rpl38a","uniquename":"SJAG_04534"},{"name":"cym1","uniquename":"SJAG_04533"},{"name":"den11","uniquename":"SJAG_04532"},{"name":"npa3","uniquename":"SJAG_04531"},{"name":"rti1","uniquename":"SJAG_04530"}],"genes_by_uniquename":{"HGNC:23133":null,"SJAG_04535":null,"SPBC577.03c":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Acetyltransferase (GNAT) domain","id":"PF13302","interpro_description":"GNAT domain","interpro_id":"IPR000182","interpro_name":"GNAT_dom","locations":[{"end":192,"start":13}],"match_end":192,"match_start":13,"name":"Acetyltransf_3"},{"dbname":"PROSITE_PROFILES","description":"Gcn5-related N-acetyltransferase (GNAT) domain profile.","id":"PS51186","interpro_description":"GNAT domain","interpro_id":"IPR000182","interpro_name":"GNAT_dom","locations":[{"end":210,"start":33}],"match_end":210,"match_start":33,"name":"GNAT"},{"dbname":"SUPERFAMILY","id":"SSF55729","interpro_description":"Acyl-CoA N-acyltransferase","interpro_id":"IPR016181","interpro_name":"Acyl_CoA_acyltransferase","locations":[{"end":197,"start":12}],"match_end":197,"match_start":12,"name":"Acyl-CoA N-acyltransferases (Nat)"},{"dbname":"GENE3D","id":"G3DSA:3.40.630.30","locations":[{"end":198,"start":2}],"match_end":198,"match_start":2},{"dbname":"PANTHER","id":"PTHR13256","interpro_description":"N-acetyltransferase 9-like","interpro_id":"IPR039135","interpro_name":"NAT9-like","locations":[{"end":210,"start":3}],"match_end":210,"match_start":3,"name":"N-ACETYLTRANSFERASE 9"}],"location":{"chromosome_name":"supercont5.3","end_pos":674969,"start_pos":674172,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":122,"start":108}}],"ortholog_annotations":[{"gene_uniquename":"SJAG_04535","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:23133","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04535","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC577.03c","reference_uniquename":"PMID:21511999"}],"product":"N-acetyltransferase","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0008080"]}},"subset_termids":["GO:0005634","GO:0005829","GO:0016746"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005634":null,"GO:0005829":null,"GO:0008080":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04535.1"],"transcripts_by_uniquename":{"SJAG_04535.1":null},"uniprot_identifier":"B6K731","uniquename":"SJAG_04535"}


id: SJAG_04536
data:
  {"coiled_coil_coords":[{"range":{"end":172,"start":138}}],"cv_annotations":{"biological_process":[{"annotations":[111430],"is_not":false,"summary":null,"term":"GO:0016973"}],"cellular_component":[{"annotations":[111427],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[111429],"is_not":false,"summary":null,"term":"GO:0000445"}]},"dbxrefs":["InterPro:IPR019163","EnsemblGenomes-Gn:SJAG_04536","UniProtKB/TrEMBL:B6K732","EnsemblGenomes-Tr:EEB09336"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"ckn1","uniquename":"SJAG_04540"},{"name":"txl1","uniquename":"SJAG_04539"},{"name":"ubp10","uniquename":"SJAG_04538"},{"name":"stt4","uniquename":"SJAG_04537"},{"name":"rec27","uniquename":"SJAG_05333"},{"name":"tho5","uniquename":"SJAG_04536"},{"uniquename":"SJAG_04535"},{"name":"rpl38a","uniquename":"SJAG_04534"},{"name":"cym1","uniquename":"SJAG_04533"},{"name":"den11","uniquename":"SJAG_04532"},{"name":"npa3","uniquename":"SJAG_04531"}],"genes_by_uniquename":{"HGNC:19074":null,"SJAG_04536":null,"SPBC577.04":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Fms-interacting protein/Thoc5","id":"PF09766","interpro_description":"THO complex, subunit 5","interpro_id":"IPR019163","interpro_name":"THO_Thoc5","locations":[{"end":189,"start":43}],"match_end":189,"match_start":43,"name":"FmiP_Thoc5"},{"dbname":"PANTHER","id":"PTHR13375","interpro_description":"THO complex, subunit 5","interpro_id":"IPR019163","interpro_name":"THO_Thoc5","locations":[{"end":188,"start":4}],"match_end":188,"match_start":4,"name":"FMS INTERACTING PROTEIN"},{"dbname":"COILS","id":"Coil","locations":[{"end":172,"start":138}],"match_end":172,"match_start":138,"name":"Coil"}],"location":{"chromosome_name":"supercont5.3","end_pos":673974,"start_pos":673346,"strand":"reverse"},"name":"tho5","ortholog_annotations":[{"gene_uniquename":"SJAG_04536","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:19074","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04536","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC577.04","reference_uniquename":"PMID:21511999"}],"product":"THO complex subunit Tho5","references_by_uniquename":{"GO_REF:0000107":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{},"subset_termids":["GO:0005634","GO:0005829","GO:0006913"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000445":null,"GO:0005829":null,"GO:0016973":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04536.1"],"transcripts_by_uniquename":{"SJAG_04536.1":null},"uniprot_identifier":"B6K732","uniquename":"SJAG_04536"}


id: SJAG_04537
data:
  {"cv_annotations":{"biological_process":[{"annotations":[111440],"is_not":false,"summary":null,"term":"GO:0180048"},{"annotations":[111441],"is_not":false,"summary":null,"term":"GO:0046854"},{"annotations":[72130],"is_not":false,"summary":null,"term":"GO:0048015"}],"cellular_component":[{"annotations":[111438],"is_not":false,"summary":null,"term":"GO:0005739"},{"annotations":[72128],"is_not":false,"summary":null,"term":"GO:0005886"}],"molecular_function":[{"annotations":[72129],"is_not":false,"summary":null,"term":"GO:0004430"},{"annotations":[111444],"is_not":false,"summary":null,"term":"GO:0005524"}],"mondo":[{"annotations":[87608],"is_not":false,"summary":null,"term":"MONDO:0030669"},{"annotations":[85452],"is_not":false,"summary":null,"term":"MONDO:0014679"},{"annotations":[86394],"is_not":false,"summary":null,"term":"MONDO:0030482"}]},"dbxrefs":["GOA:B6K734","InterPro:IPR001263","EnsemblGenomes-Tr:EEB09338","InterPro:IPR015433","InterPro:IPR018936","InterPro:IPR000403","InterPro:IPR016024","UniProtKB/TrEMBL:B6K734","InterPro:IPR036940","EnsemblGenomes-Gn:SJAG_04537","InterPro:IPR011009","InterPro:IPR042236"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"uniquename":"SJAG_04543"},{"name":"pre4","uniquename":"SJAG_04541"},{"name":"ckn1","uniquename":"SJAG_04540"},{"name":"txl1","uniquename":"SJAG_04539"},{"name":"ubp10","uniquename":"SJAG_04538"},{"name":"stt4","uniquename":"SJAG_04537"},{"name":"rec27","uniquename":"SJAG_05333"},{"name":"tho5","uniquename":"SJAG_04536"},{"uniquename":"SJAG_04535"},{"name":"rpl38a","uniquename":"SJAG_04534"},{"name":"cym1","uniquename":"SJAG_04533"}],"genes_by_uniquename":{"HGNC:8983":null,"SJAG_04537":null,"SPBC577.06c":null,"YLR305C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Phosphoinositide 3-kinase family, accessory domain (PIK domain)","id":"PF00613","interpro_description":"Phosphoinositide 3-kinase, accessory (PIK) domain","interpro_id":"IPR001263","interpro_name":"PI3K_accessory_dom","locations":[{"end":1498,"start":1378}],"match_end":1498,"match_start":1378,"name":"PI3Ka"},{"dbname":"PFAM","description":"Phosphatidylinositol 3- and 4-kinase","id":"PF00454","interpro_description":"Phosphatidylinositol 3-/4-kinase, catalytic domain","interpro_id":"IPR000403","interpro_name":"PI3/4_kinase_cat_dom","locations":[{"end":1816,"start":1611}],"match_end":1816,"match_start":1611,"name":"PI3_PI4_kinase"},{"dbname":"PFAM","description":"PI4-kinase N-terminal region","id":"PF19274","interpro_description":"PI4-kinase, N-terminal","interpro_id":"IPR045495","interpro_name":"PI4K_N","locations":[{"end":1242,"start":1035}],"match_end":1242,"match_start":1035,"name":"PI4K_N"},{"dbname":"CDD","description":"PI4Kc_III_alpha","id":"cd05167","locations":[{"end":1866,"start":1553}],"match_end":1866,"match_start":1553,"name":"PI4Kc_III_alpha"},{"dbname":"PROSITE_PATTERNS","description":"Phosphatidylinositol 3- and 4-kinases signature 2.","id":"PS00916","interpro_description":"Phosphatidylinositol 3/4-kinase, conserved site","interpro_id":"IPR018936","interpro_name":"PI3/4_kinase_CS","locations":[{"end":1728,"start":1708}],"match_end":1728,"match_start":1708,"name":"PI3_4_KINASE_2"},{"dbname":"PROSITE_PATTERNS","description":"Phosphatidylinositol 3- and 4-kinases signature 1.","id":"PS00915","interpro_description":"Phosphatidylinositol 3/4-kinase, conserved site","interpro_id":"IPR018936","interpro_name":"PI3/4_kinase_CS","locations":[{"end":1629,"start":1615}],"match_end":1629,"match_start":1615,"name":"PI3_4_KINASE_1"},{"dbname":"PROSITE_PROFILES","description":"PIK helical domain profile.","id":"PS51545","interpro_description":"Phosphoinositide 3-kinase, accessory (PIK) domain","interpro_id":"IPR001263","interpro_name":"PI3K_accessory_dom","locations":[{"end":1486,"start":1300}],"match_end":1486,"match_start":1300,"name":"PIK_HELICAL"},{"dbname":"PROSITE_PROFILES","description":"Phosphatidylinositol 3- and 4-kinases catalytic domain profile.","id":"PS50290","interpro_description":"Phosphatidylinositol 3-/4-kinase, catalytic domain","interpro_id":"IPR000403","interpro_name":"PI3/4_kinase_cat_dom","locations":[{"end":1853,"start":1589}],"match_end":1853,"match_start":1589,"name":"PI3_4_KINASE_3"},{"dbname":"SMART","id":"SM00145","interpro_description":"Phosphoinositide 3-kinase, accessory (PIK) domain","interpro_id":"IPR001263","interpro_name":"PI3K_accessory_dom","locations":[{"end":1500,"start":1311}],"match_end":1500,"match_start":1311,"name":"pi3k_hr2_4"},{"dbname":"SMART","id":"SM00146","interpro_description":"Phosphatidylinositol 3-/4-kinase, catalytic domain","interpro_id":"IPR000403","interpro_name":"PI3/4_kinase_cat_dom","locations":[{"end":1866,"start":1612}],"match_end":1866,"match_start":1612,"name":"pi3k_hr1_6"},{"dbname":"FUNFAM","description":"Phosphatidylinositol 4-kinase alpha 1","id":"G3DSA:1.10.1070.11:FF:000012","locations":[{"end":1857,"start":1664}],"match_end":1857,"match_start":1664},{"dbname":"FUNFAM","description":"Phosphatidylinositol 4-kinase STT4","id":"G3DSA:3.30.1010.10:FF:000014","locations":[{"end":1665,"start":1496}],"match_end":1665,"match_start":1496},{"dbname":"FUNFAM","description":"Phosphatidylinositol 4-kinase alpha","id":"G3DSA:1.25.40.70:FF:000011","locations":[{"end":1493,"start":1328}],"match_end":1493,"match_start":1328},{"dbname":"SUPERFAMILY","id":"SSF48371","interpro_description":"Armadillo-type fold","interpro_id":"IPR016024","interpro_name":"ARM-type_fold","locations":[{"end":1472,"start":1312}],"match_end":1472,"match_start":1312,"name":"ARM repeat"},{"dbname":"SUPERFAMILY","id":"SSF56112","interpro_description":"Protein kinase-like domain superfamily","interpro_id":"IPR011009","interpro_name":"Kinase-like_dom_sf","locations":[{"end":1862,"start":1494}],"match_end":1862,"match_start":1494,"name":"Protein kinase-like (PK-like)"},{"dbname":"GENE3D","id":"G3DSA:1.10.1070.11","interpro_description":"Phosphatidylinositol 3-/4-kinase, catalytic domain superfamily","interpro_id":"IPR036940","interpro_name":"PI3/4_kinase_cat_sf","locations":[{"end":1867,"start":1673}],"match_end":1867,"match_start":1673},{"dbname":"GENE3D","id":"G3DSA:1.25.40.70","interpro_description":"Phosphoinositide 3-kinase, accessory (PIK) domain superfamily","interpro_id":"IPR042236","interpro_name":"PI3K_accessory_sf","locations":[{"end":1494,"start":1370}],"match_end":1494,"match_start":1370},{"dbname":"GENE3D","id":"G3DSA:3.30.1010.10","locations":[{"end":1665,"start":1496}],"match_end":1665,"match_start":1496},{"dbname":"PANTHER","id":"PTHR10048","interpro_description":"Phosphatidylinositol kinase","interpro_id":"IPR015433","interpro_name":"PI_Kinase","locations":[{"end":1866,"start":569}],"match_end":1866,"match_start":569,"name":"PHOSPHATIDYLINOSITOL KINASE"}],"location":{"chromosome_name":"supercont5.3","end_pos":672567,"start_pos":666657,"strand":"forward"},"low_complexity_region_coords":[{"range":{"end":70,"start":54}},{"range":{"end":327,"start":310}},{"range":{"end":414,"start":398}},{"range":{"end":836,"start":825}},{"range":{"end":1024,"start":1011}},{"range":{"end":1529,"start":1514}}],"name":"stt4","ortholog_annotations":[{"gene_uniquename":"SJAG_04537","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:8983","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04537","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC577.06c","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04537","ortholog_taxonid":4932,"ortholog_uniquename":"YLR305C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04537","ortholog_taxonid":4932,"ortholog_uniquename":"YLR305C","reference_uniquename":"PMID:26896847"}],"product":"plasma membrane 1-phosphatidylinositol 4-kinase, type III-alpha Stt4","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0005524"],"not-binding":["GO:0004430"]}},"subset_termids":["GO:0005886","MONDO:0005559","MONDO:0002320","GO:0016301","GO:0005739","GO:0006629","GO:0023052"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0004430":null,"GO:0005524":null,"GO:0005739":null,"GO:0005886":null,"GO:0046854":null,"GO:0048015":null,"GO:0180048":null,"MONDO:0014679":null,"MONDO:0030482":null,"MONDO:0030669":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04537.1"],"transcripts_by_uniquename":{"SJAG_04537.1":null},"uniprot_identifier":"B6K734","uniquename":"SJAG_04537"}


id: SJAG_04538
data:
  {"cv_annotations":{"biological_process":[{"annotations":[76027],"is_not":false,"summary":null,"term":"GO:0000245"}],"cellular_component":[{"annotations":[111446],"is_not":false,"summary":null,"term":"GO:0046540"}],"molecular_function":[{"annotations":[64147],"is_not":false,"summary":null,"term":"GO:0004843"},{"annotations":[64148],"is_not":false,"summary":null,"term":"GO:0008270"}]},"dbxrefs":["GOA:B6K735","InterPro:IPR001394","InterPro:IPR013083","EnsemblGenomes-Tr:EEB09339","InterPro:IPR033809","InterPro:IPR028889","InterPro:IPR038765","EnsemblGenomes-Gn:SJAG_04538","UniProtKB/TrEMBL:B6K735","InterPro:IPR001607"],"deletion_viability":"unknown","disordered_region_coords":[{"range":{"end":47,"start":1}}],"feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"dph6","uniquename":"SJAG_04544"},{"uniquename":"SJAG_04543"},{"name":"pre4","uniquename":"SJAG_04541"},{"name":"ckn1","uniquename":"SJAG_04540"},{"name":"txl1","uniquename":"SJAG_04539"},{"name":"ubp10","uniquename":"SJAG_04538"},{"name":"stt4","uniquename":"SJAG_04537"},{"name":"rec27","uniquename":"SJAG_05333"},{"name":"tho5","uniquename":"SJAG_04536"},{"uniquename":"SJAG_04535"},{"name":"rpl38a","uniquename":"SJAG_04534"}],"genes_by_uniquename":{"HGNC:20071":null,"SJAG_04538":null,"SPBC577.07":null,"YFR005C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Ubiquitin carboxyl-terminal hydrolase","id":"PF00443","interpro_description":"Peptidase C19, ubiquitin carboxyl-terminal hydrolase","interpro_id":"IPR001394","interpro_name":"Peptidase_C19_UCH","locations":[{"end":496,"start":177}],"match_end":496,"match_start":177,"name":"UCH"},{"dbname":"PFAM","description":"Zn-finger in ubiquitin-hydrolases and other protein","id":"PF02148","interpro_description":"Zinc finger, UBP-type","interpro_id":"IPR001607","interpro_name":"Znf_UBP","locations":[{"end":135,"start":76}],"match_end":135,"match_start":76,"name":"zf-UBP"},{"dbname":"CDD","description":"Peptidase_C19M","id":"cd02669","interpro_description":"USP39","interpro_id":"IPR033809","interpro_name":"USP39","locations":[{"end":500,"start":58}],"match_end":500,"match_start":58,"name":"Peptidase_C19M"},{"dbname":"PROSITE_PROFILES","description":"Zinc finger UBP-type profile.","id":"PS50271","interpro_description":"Zinc finger, UBP-type","interpro_id":"IPR001607","interpro_name":"Znf_UBP","locations":[{"end":152,"start":55}],"match_end":152,"match_start":55,"name":"ZF_UBP"},{"dbname":"PROSITE_PROFILES","description":"Ubiquitin specific protease (USP) domain profile.","id":"PS50235","interpro_description":"Ubiquitin specific protease domain","interpro_id":"IPR028889","interpro_name":"USP_dom","locations":[{"end":502,"start":177}],"match_end":502,"match_start":177,"name":"USP_3"},{"dbname":"SMART","id":"SM00290","interpro_description":"Zinc finger, UBP-type","interpro_id":"IPR001607","interpro_name":"Znf_UBP","locations":[{"end":124,"start":75}],"match_end":124,"match_start":75,"name":"Zf_UBP_1"},{"dbname":"FUNFAM","description":"U4/U6.U5 tri-snRNP-associated protein 2","id":"G3DSA:3.30.40.10:FF:000068","locations":[{"end":145,"start":57}],"match_end":145,"match_start":57},{"dbname":"SUPERFAMILY","id":"SSF57850","locations":[{"end":141,"start":59}],"match_end":141,"match_start":59,"name":"RING/U-box"},{"dbname":"SUPERFAMILY","id":"SSF54001","interpro_description":"Papain-like cysteine peptidase superfamily","interpro_id":"IPR038765","interpro_name":"Papain-like_cys_pep_sf","locations":[{"end":501,"start":166}],"match_end":501,"match_start":166,"name":"Cysteine proteinases"},{"dbname":"GENE3D","id":"G3DSA:3.30.40.10","interpro_description":"Zinc finger, RING/FYVE/PHD-type","interpro_id":"IPR013083","interpro_name":"Znf_RING/FYVE/PHD","locations":[{"end":145,"start":57}],"match_end":145,"match_start":57,"name":"Zinc/RING finger domain, C3HC4 (zinc finger)"},{"dbname":"GENE3D","id":"G3DSA:3.90.70.10","locations":[{"end":503,"start":146}],"match_end":503,"match_start":146,"name":"Cysteine proteinases"},{"dbname":"PANTHER","id":"PTHR21646","interpro_description":"Ubiquitin carboxyl-terminal hydrolase","interpro_id":"IPR050185","interpro_name":"Ub_carboxyl-term_hydrolase","locations":[{"end":501,"start":44}],"match_end":501,"match_start":44,"name":"UBIQUITIN CARBOXYL-TERMINAL HYDROLASE"},{"dbname":"MOBIDB-Disorder","description":"consensus disorder prediction","id":"mobidb-lite-Disorder","locations":[{"end":47,"start":1}],"match_end":47,"match_start":1,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polar","description":"consensus disorder prediction","id":"mobidb-lite-Polar","locations":[{"end":47,"start":33}],"match_end":47,"match_start":33,"name":"disorder_prediction"},{"dbname":"MOBIDB-Polyampholyte","description":"consensus disorder prediction","id":"mobidb-lite-Polyampholyte","locations":[{"end":32,"start":17}],"match_end":32,"match_start":17,"name":"disorder_prediction"}],"location":{"chromosome_name":"supercont5.3","end_pos":666355,"start_pos":664747,"strand":"reverse"},"name":"ubp10","ortholog_annotations":[{"gene_uniquename":"SJAG_04538","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:20071","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04538","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC577.07","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04538","ortholog_taxonid":4932,"ortholog_uniquename":"YFR005C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04538","ortholog_taxonid":4932,"ortholog_uniquename":"YFR005C","reference_uniquename":"PMID:26896847"}],"product":"ubiquitin C-terminal hydrolase Ubp10","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"binding":["GO:0008270"],"not-binding":["GO:0004843"]}},"subset_termids":["GO:0008233","GO:0140096","GO:0005634","GO:0016071","GO:0065003"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000245":null,"GO:0004843":null,"GO:0008270":null,"GO:0046540":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04538.1"],"transcripts_by_uniquename":{"SJAG_04538.1":null},"uniprot_identifier":"B6K735","uniquename":"SJAG_04538"}


id: SJAG_04539
data:
  {"cv_annotations":{"biological_process":[{"annotations":[111454],"is_not":false,"summary":null,"term":"GO:0000122"},{"annotations":[111455],"is_not":false,"summary":null,"term":"GO:0043161"}],"cellular_component":[{"annotations":[78202],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[111452],"is_not":false,"summary":null,"term":"GO:0034399"}],"molecular_function":[{"annotations":[78203],"is_not":false,"summary":null,"term":"GO:0015035"}]},"dbxrefs":["UniProtKB/TrEMBL:B6K736","EnsemblGenomes-Tr:EEB09340","EnsemblGenomes-Gn:SJAG_04539","InterPro:IPR008979","InterPro:IPR013766","InterPro:IPR010400","InterPro:IPR037047","GOA:B6K736","InterPro:IPR036249"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"syj2","uniquename":"SJAG_04545"},{"name":"dph6","uniquename":"SJAG_04544"},{"uniquename":"SJAG_04543"},{"name":"pre4","uniquename":"SJAG_04541"},{"name":"ckn1","uniquename":"SJAG_04540"},{"name":"txl1","uniquename":"SJAG_04539"},{"name":"ubp10","uniquename":"SJAG_04538"},{"name":"stt4","uniquename":"SJAG_04537"},{"name":"rec27","uniquename":"SJAG_05333"},{"name":"tho5","uniquename":"SJAG_04536"},{"uniquename":"SJAG_04535"}],"genes_by_uniquename":{"HGNC:12436":null,"SJAG_04539":null,"SPBC577.08c":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"PITH domain","id":"PF06201","interpro_description":"PITH domain","interpro_id":"IPR010400","interpro_name":"PITH_dom","locations":[{"end":308,"start":151}],"match_end":308,"match_start":151,"name":"PITH"},{"dbname":"PFAM","description":"Thioredoxin","id":"PF00085","interpro_description":"Thioredoxin domain","interpro_id":"IPR013766","interpro_name":"Thioredoxin_domain","locations":[{"end":130,"start":34}],"match_end":130,"match_start":34,"name":"Thioredoxin"},{"dbname":"CDD","description":"TRX_family","id":"cd02947","locations":[{"end":130,"start":37}],"match_end":130,"match_start":37,"name":"TRX_family"},{"dbname":"PROSITE_PROFILES","description":"Thioredoxin domain profile.","id":"PS51352","interpro_description":"Thioredoxin domain","interpro_id":"IPR013766","interpro_name":"Thioredoxin_domain","locations":[{"end":134,"start":9}],"match_end":134,"match_start":9,"name":"THIOREDOXIN_2"},{"dbname":"PROSITE_PROFILES","description":"PITH domain profile.","id":"PS51532","interpro_description":"PITH domain","interpro_id":"IPR010400","interpro_name":"PITH_dom","locations":[{"end":316,"start":146}],"match_end":316,"match_start":146,"name":"PITH"},{"dbname":"PRINTS","description":"Thioredoxin family signature","id":"PR00421","locations":[{"end":66,"start":49},{"end":109,"start":98}],"match_end":109,"match_start":49,"name":"THIOREDOXIN"},{"dbname":"FUNFAM","description":"Thioredoxin","id":"G3DSA:3.40.30.10:FF:000245","locations":[{"end":134,"start":27}],"match_end":134,"match_start":27},{"dbname":"SUPERFAMILY","id":"SSF49785","interpro_description":"Galactose-binding-like domain superfamily","interpro_id":"IPR008979","interpro_name":"Galactose-bd-like_sf","locations":[{"end":301,"start":147}],"match_end":301,"match_start":147,"name":"Galactose-binding domain-like"},{"dbname":"SUPERFAMILY","id":"SSF52833","interpro_description":"Thioredoxin-like superfamily","interpro_id":"IPR036249","interpro_name":"Thioredoxin-like_sf","locations":[{"end":135,"start":25}],"match_end":135,"match_start":25,"name":"Thioredoxin-like"},{"dbname":"GENE3D","id":"G3DSA:2.60.120.470","interpro_description":"PITH domain superfamily","interpro_id":"IPR037047","interpro_name":"PITH_dom_sf","locations":[{"end":316,"start":147}],"match_end":316,"match_start":147,"name":"PITH domain"},{"dbname":"GENE3D","id":"G3DSA:3.40.30.10","locations":[{"end":141,"start":18}],"match_end":141,"match_start":18,"name":"Glutaredoxin"},{"dbname":"PANTHER","id":"PTHR46115","locations":[{"end":315,"start":28}],"match_end":315,"match_start":28,"name":"THIOREDOXIN-LIKE PROTEIN 1"}],"location":{"chromosome_name":"supercont5.3","end_pos":664581,"start_pos":663557,"strand":"forward"},"name":"txl1","ortholog_annotations":[{"gene_uniquename":"SJAG_04539","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:12436","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04539","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC577.08c","reference_uniquename":"PMID:21511999"}],"product":"thioredoxin-like I protein Txl1","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0015035"]}},"subset_termids":["GO:0015036","GO:0016491","GO:0005634","GO:0006355","GO:0006351","GO:0140096","GO:0030163","GO:0034399","GO:0005829"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0000122":null,"GO:0005829":null,"GO:0015035":null,"GO:0034399":null,"GO:0043161":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04539.1"],"transcripts_by_uniquename":{"SJAG_04539.1":null},"uniprot_identifier":"B6K736","uniquename":"SJAG_04539"}


id: SJAG_04540
data:
  {"cv_annotations":{"biological_process":[{"annotations":[70395],"is_not":false,"summary":null,"term":"GO:0043161"},{"annotations":[70398],"is_not":false,"summary":null,"term":"GO:0006283"}],"cellular_component":[{"annotations":[70397],"is_not":false,"summary":null,"term":"GO:0031464"},{"annotations":[111458],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[111459],"is_not":false,"summary":null,"term":"GO:0070912"}],"mondo":[{"annotations":[86390],"is_not":false,"summary":null,"term":"MONDO:0019569"},{"annotations":[86641],"is_not":false,"summary":null,"term":"MONDO:0013829"}]},"dbxrefs":["InterPro:IPR020472","InterPro:IPR036322","GOA:B6K737","InterPro:IPR001680","InterPro:IPR017986","InterPro:IPR019775","InterPro:IPR042238","UniProtKB/TrEMBL:B6K737","EnsemblGenomes-Gn:SJAG_04540","EnsemblGenomes-Tr:EEB09341","InterPro:IPR015943"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"spa1","uniquename":"SJAG_04546"},{"name":"syj2","uniquename":"SJAG_04545"},{"name":"dph6","uniquename":"SJAG_04544"},{"uniquename":"SJAG_04543"},{"name":"pre4","uniquename":"SJAG_04541"},{"name":"ckn1","uniquename":"SJAG_04540"},{"name":"txl1","uniquename":"SJAG_04539"},{"name":"ubp10","uniquename":"SJAG_04538"},{"name":"stt4","uniquename":"SJAG_04537"},{"name":"rec27","uniquename":"SJAG_05333"},{"name":"tho5","uniquename":"SJAG_04536"}],"genes_by_uniquename":{"HGNC:3439":null,"SJAG_04540":null,"SPBC577.09":null,"YDR030C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"WD domain, G-beta repeat","id":"PF00400","interpro_description":"WD40 repeat","interpro_id":"IPR001680","interpro_name":"WD40_rpt","locations":[{"end":76,"start":47},{"end":130,"start":98},{"end":216,"start":178},{"end":272,"start":239}],"match_end":272,"match_start":47,"name":"WD40"},{"dbname":"CDD","description":"WD40","id":"cd00200","locations":[{"end":367,"start":40}],"match_end":367,"match_start":40,"name":"WD40"},{"dbname":"PROSITE_PATTERNS","description":"Trp-Asp (WD) repeats signature.","id":"PS00678","interpro_description":"WD40 repeat, conserved site","interpro_id":"IPR019775","interpro_name":"WD40_repeat_CS","locations":[{"end":77,"start":63},{"end":217,"start":203},{"end":273,"start":259}],"match_end":273,"match_start":63,"name":"WD_REPEATS_1"},{"dbname":"PROSITE_PROFILES","description":"Trp-Asp (WD) repeats circular profile.","id":"PS50294","locations":[{"end":130,"start":97},{"end":218,"start":183},{"end":277,"start":240}],"match_end":277,"match_start":97,"name":"WD_REPEATS_REGION"},{"dbname":"PROSITE_PROFILES","description":"Trp-Asp (WD) repeats profile.","id":"PS50082","interpro_description":"WD40 repeat","interpro_id":"IPR001680","interpro_name":"WD40_rpt","locations":[{"end":85,"start":43},{"end":139,"start":97},{"end":225,"start":183},{"end":281,"start":240}],"match_end":281,"match_start":43,"name":"WD_REPEATS_2"},{"dbname":"SMART","id":"SM00320","interpro_description":"WD40 repeat","interpro_id":"IPR001680","interpro_name":"WD40_rpt","locations":[{"end":76,"start":34},{"end":130,"start":87},{"end":216,"start":176},{"end":272,"start":233},{"end":367,"start":327}],"match_end":367,"match_start":34,"name":"WD40_4"},{"dbname":"PRINTS","description":"G protein beta WD-40 repeat signature","id":"PR00320","interpro_description":"G-protein beta WD-40 repeat","interpro_id":"IPR020472","interpro_name":"G-protein_beta_WD-40_rep","locations":[{"end":77,"start":63},{"end":131,"start":117},{"end":217,"start":203}],"match_end":217,"match_start":63,"name":"GPROTEINBRPT"},{"dbname":"SUPERFAMILY","id":"SSF50978","interpro_description":"WD40-repeat-containing domain superfamily","interpro_id":"IPR036322","interpro_name":"WD40_repeat_dom_sf","locations":[{"end":369,"start":44}],"match_end":369,"match_start":44,"name":"WD40 repeat-like"},{"dbname":"GENE3D","id":"G3DSA:2.130.10.10","interpro_description":"WD40/YVTN repeat-like-containing domain superfamily","interpro_id":"IPR015943","interpro_name":"WD40/YVTN_repeat-like_dom_sf","locations":[{"end":370,"start":1}],"match_end":370,"match_start":1},{"dbname":"PANTHER","id":"PTHR46202","interpro_description":"DNA excision repair protein Rad28/ERCC8/Ckn1/ATCSA-1","interpro_id":"IPR042238","interpro_name":"Rad28/ERCC8/Ckn1/ATCSA-1","locations":[{"end":376,"start":1}],"match_end":376,"match_start":1,"name":"DNA EXCISION REPAIR PROTEIN ERCC-8"}],"location":{"chromosome_name":"supercont5.3","end_pos":663191,"start_pos":661772,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":81,"start":69}},{"range":{"end":335,"start":321}}],"name":"ckn1","ortholog_annotations":[{"gene_uniquename":"SJAG_04540","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:3439","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04540","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC577.09","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04540","ortholog_taxonid":4932,"ortholog_uniquename":"YDR030C","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04540","ortholog_taxonid":4932,"ortholog_uniquename":"YDR030C","reference_uniquename":"PMID:26896847"}],"product":"ERCC8 DNA repair homolog","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:26896847":null,"PMID:29761456":null},"split_by_parent_groups":{},"subset_termids":["GO:0005634","GO:0006281","GO:0005829","MONDO:0019303","MONDO:0021190","GO:0030163","MONDO:0006025","MONDO:0005066","MONDO:0005093"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0005829":null,"GO:0006283":null,"GO:0031464":null,"GO:0043161":null,"GO:0070912":null,"MONDO:0013829":null,"MONDO:0019569":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04540.1"],"transcripts_by_uniquename":{"SJAG_04540.1":null},"uniprot_identifier":"B6K737","uniquename":"SJAG_04540"}


id: SJAG_04541
data:
  {"cv_annotations":{"biological_process":[{"annotations":[111465],"is_not":false,"summary":null,"term":"GO:0043161"}],"cellular_component":[{"annotations":[111462],"is_not":false,"summary":null,"term":"GO:0005829"},{"annotations":[57444],"is_not":false,"summary":null,"term":"GO:0005634"},{"annotations":[57446],"is_not":false,"summary":null,"term":"GO:0019774"}],"molecular_function":[{"annotations":[111466],"is_not":false,"summary":null,"term":"GO:0004175"}],"mondo":[{"annotations":[85782],"is_not":false,"summary":null,"term":"MONDO:0054699"}]},"dbxrefs":["EnsemblGenomes-Gn:SJAG_04541","InterPro:IPR001353","InterPro:IPR029055","UniProtKB/TrEMBL:B6K738","GOA:B6K738","InterPro:IPR016295","EnsemblGenomes-Tr:EEB09342","InterPro:IPR023333","InterPro:IPR016050"],"deletion_viability":"unknown","feature_so_termid":"SO:0000704","feature_type":"mRNA gene","gene_neighbourhood":[{"name":"sim3","uniquename":"SJAG_04547"},{"name":"spa1","uniquename":"SJAG_04546"},{"name":"syj2","uniquename":"SJAG_04545"},{"name":"dph6","uniquename":"SJAG_04544"},{"uniquename":"SJAG_04543"},{"name":"pre4","uniquename":"SJAG_04541"},{"name":"ckn1","uniquename":"SJAG_04540"},{"name":"txl1","uniquename":"SJAG_04539"},{"name":"ubp10","uniquename":"SJAG_04538"},{"name":"stt4","uniquename":"SJAG_04537"},{"name":"rec27","uniquename":"SJAG_05333"}],"genes_by_uniquename":{"HGNC:9541":null,"SJAG_04541":null,"SPBC577.10":null,"YFR050C":null},"has_protein_features":true,"interpro_matches":[{"dbname":"PFAM","description":"Proteasome subunit","id":"PF00227","interpro_description":"Proteasome, subunit alpha/beta","interpro_id":"IPR001353","interpro_name":"Proteasome_sua/b","locations":[{"end":233,"start":43}],"match_end":233,"match_start":43,"name":"Proteasome"},{"dbname":"CDD","description":"proteasome_beta_type_4","id":"cd03760","interpro_description":"Proteasome subunit beta 4","interpro_id":"IPR016295","interpro_name":"Proteasome_beta4","locations":[{"end":240,"start":44}],"match_end":240,"match_start":44,"name":"proteasome_beta_type_4"},{"dbname":"PROSITE_PATTERNS","description":"Proteasome beta-type subunits signature.","id":"PS00854","interpro_description":"Proteasome beta-type subunit, conserved site","interpro_id":"IPR016050","interpro_name":"Proteasome_bsu_CS","locations":[{"end":96,"start":49}],"match_end":96,"match_start":49,"name":"PROTEASOME_BETA_1"},{"dbname":"PROSITE_PROFILES","description":"Proteasome beta-type subunit profile.","id":"PS51476","interpro_description":"Proteasome B-type subunit","interpro_id":"IPR023333","interpro_name":"Proteasome_suB-type","locations":[{"end":233,"start":45}],"match_end":233,"match_start":45,"name":"PROTEASOME_BETA_2"},{"dbname":"FUNFAM","description":"Proteasome subunit beta type-7","id":"G3DSA:3.60.20.10:FF:000014","locations":[{"end":262,"start":38}],"match_end":262,"match_start":38},{"dbname":"SUPERFAMILY","id":"SSF56235","interpro_description":"Nucleophile aminohydrolases, N-terminal","interpro_id":"IPR029055","interpro_name":"Ntn_hydrolases_N","locations":[{"end":256,"start":39}],"match_end":256,"match_start":39,"name":"N-terminal nucleophile aminohydrolases (Ntn hydrolases)"},{"dbname":"GENE3D","id":"G3DSA:3.60.20.10","interpro_description":"Nucleophile aminohydrolases, N-terminal","interpro_id":"IPR029055","interpro_name":"Ntn_hydrolases_N","locations":[{"end":264,"start":38}],"match_end":264,"match_start":38,"name":"Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1"},{"dbname":"PANTHER","id":"PTHR32194","interpro_description":"Proteasome B-type subunit","interpro_id":"IPR023333","interpro_name":"Proteasome_suB-type","locations":[{"end":241,"start":37}],"match_end":241,"match_start":37,"name":"METALLOPROTEASE TLDD"},{"dbname":"PIRSF","id":"PIRSF001213","interpro_description":"Proteasome subunit beta 4","interpro_id":"IPR016295","interpro_name":"Proteasome_beta4","locations":[{"end":264,"start":5}],"match_end":264,"match_start":5,"name":"MCP"}],"location":{"chromosome_name":"supercont5.3","end_pos":661495,"start_pos":660701,"strand":"reverse"},"low_complexity_region_coords":[{"range":{"end":91,"start":81}}],"name":"pre4","ortholog_annotations":[{"gene_uniquename":"SJAG_04541","ortholog_taxonid":9606,"ortholog_uniquename":"HGNC:9541","reference_uniquename":"PMID:29761456"},{"gene_uniquename":"SJAG_04541","ortholog_taxonid":4896,"ortholog_uniquename":"SPBC577.10","reference_uniquename":"PMID:21511999"},{"gene_uniquename":"SJAG_04541","ortholog_taxonid":4932,"ortholog_uniquename":"YFR050C","reference_uniquename":"PMID:29761456"}],"product":"20S proteasome complex subunit beta 7, Pre4","references_by_uniquename":{"GO_REF:0000104":null,"GO_REF:0000107":null,"PB_REF:0000006":null,"PMID:21511999":null,"PMID:29761456":null},"split_by_parent_groups":{"molecular_function":{"not-binding":["GO:0004175"]}},"subset_termids":["MONDO:0006025","GO:0030163","GO:0005829","GO:0005634","GO:0008233","GO:0140096","MONDO:0005046"],"taxonid":4897,"taxonomic_distribution":"other","terms_by_termid":{"GO:0004175":null,"GO:0005634":null,"GO:0005829":null,"GO:0019774":null,"GO:0043161":null,"MONDO:0054699":null},"transcript_so_termid":"SO:0000234","transcripts":["SJAG_04541.1"],"transcripts_by_uniquename":{"SJAG_04541.1":null},"uniprot_identifier":"B6K738","uniquename":"SJAG_04541"}


