# terms

id: PBO:0029583
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_RNA_catabolic_process_during_vegetative_growth","termid":"PBO:0029583"}


id: PBO:0076804
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tektin 4 pseudogene 1","termid":"PBO:0076804"}


id: PBO:0086824
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; YNL033W has a paralog, YNL019C, that arose from a segmental duplication","termid":"PBO:0086824"}


id: PBO:0072905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secretory carrier membrane protein 3","termid":"PBO:0072905"}


id: GO:0044795
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of substances, in membrane-bounded vesicles, from the trans-Golgi network to the recycling endosomes.","definition_xrefs":["GOC:lb","PMID:18779367"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endosomal transport","termid":"GO:0016197"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0016192","GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"trans-Golgi network to recycling endosome transport","termid":"GO:0044795"}


id: MONDO:0003512
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign or malignant soft tissue neoplasm of the mediastinum. Representative examples of benign mediastinal soft tissue neoplasms include chondroma, leiomyoma, lipoma, and rhabdomyoma. Representative examples of malignant mediastinal soft tissue neoplasms include angiosarcoma, leiomyosarcoma, liposarcoma, osteosarcoma, rhabdomyosarcoma, and synovial sarcoma.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"mediastinal cancer","termid":"MONDO:0005843"},{"relation_name":"is_a","term_name":"soft tissue neoplasm","termid":"MONDO:0006424"},{"relation_name":"is_a","term_name":"neoplasm of mediastinum","termid":"MONDO:0021386"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediastinal mesenchymal tumor","secondary_identifiers":["UMLS:C1334669","NCIT:C6637","MEDGEN:233171","DOID:5560"],"synonyms":[{"name":"mediastinal soft tissue neoplasm","type":"exact"},{"name":"mediastinal soft tissue tumor","type":"exact"},{"name":"mediastinal soft tissue tumour","type":"exact"},{"name":"soft tissue neoplasm of mediastinum","type":"exact"},{"name":"soft tissue neoplasm of the mediastinum","type":"exact"},{"name":"soft tissue tumor of mediastinum","type":"exact"},{"name":"soft tissue tumor of the mediastinum","type":"exact"},{"name":"soft tissue tumour of mediastinum","type":"exact"},{"name":"soft tissue tumour of the mediastinum","type":"exact"}],"termid":"MONDO:0003512","xrefs":{"Monarch":{"xref_id":"0003512"}}}


id: GO:0015390
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: purine(out) + Na+(out) = nucleoside(in) + Na+(in).","definition_xrefs":["TC:2.A.41.2.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"solute:sodium symporter activity","termid":"GO:0015370"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"purine-specific nucleoside:sodium symporter activity","termid":"GO:0015390"}


id: GO:0019772
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with low affinity with an immunoglobulin of an IgG isotype via the Fc region, and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.","definition_xrefs":["GOC:add","GOC:signaling","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"IgG receptor activity","termid":"GO:0019770"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"low-affinity IgG receptor activity","synonyms":[{"name":"low affinity Fc receptor activity","type":"related"},{"name":"low affinity IgG receptor activity","type":"exact"}],"termid":"GO:0019772"}


id: GO:0080191
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Lateral growth of a plant axis (shoot axis or root) that is an increase in thickness resulting from formation of tissue from a secondary thickening meristem.","definition_xrefs":["PO:0025004","JSTOR:4354165","PO:0025414"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lateral growth","termid":"GO:0080190"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"secondary thickening","termid":"GO:0080191"}


id: GO:0008053
data:
  {"annotated_genes":["SJAG_00304","SJAG_01357","SJAG_00031","SJAG_02656","SJAG_00855","SJAG_02265"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72847,92279,96426],"is_not":false,"summary":null,"term":"GO:0008053"},{"annotations":[105225],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1990627"},{"annotations":[106770,102363],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0010637"}]},"cv_name":"biological_process","definition":"Merging of two or more mitochondria within a cell to form a single compartment.","definition_xrefs":["PMID:12052774","PMID:11038192"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrion organization","termid":"GO:0007005"},{"relation_name":"is_a","term_name":"organelle fusion","termid":"GO:0048284"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00031":null,"SJAG_00304":null,"SJAG_00855":null,"SJAG_01357":null,"SJAG_02265":null,"SJAG_02656":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007005"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007005"],"is_obsolete":false,"name":"mitochondrial fusion","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:1990613"],"synonyms":[{"name":"mitochondrial membrane fusion","type":"related"},{"name":"mitochondrion fusion","type":"exact"}],"termid":"GO:0008053","terms_by_termid":{"GO:0008053":null,"GO:0010637":null,"GO:1990627":null}}


id: PBO:0002109
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptionally repressed by thiamine","termid":"PBO:0002109"}


id: PBO:0047677
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"filamin A","termid":"PBO:0047677"}


id: PBO:0018100
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2-dehydropantoate 2-reductase Pan5 (predicted)","termid":"PBO:0018100"}


id: MONDO:0023541
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Kasznica-Carlson-Coppedge syndrome","secondary_identifiers":["MEDGEN:444045","MESH:C537011","UMLS:C2931393"],"synonyms":[{"name":"Kasznica Carlson Coppedge syndrome","type":"related"},{"name":"ectrodactyly spina bifida cardiopathy","type":"related"},{"name":"ectrodactyly, retrognathism, abnormal ears, highly arched palate, spina bifida, congenital heart defect, single umbilical artery","type":"related"}],"termid":"MONDO:0023541","xrefs":{"Monarch":{"xref_id":"0023541"}}}


id: PBO:0077648
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TNF alpha induced protein 8","termid":"PBO:0077648"}


id: PBO:0041964
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 7","termid":"PBO:0041964"}


id: PBO:0110023
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Social Distancing Gene","termid":"PBO:0110023"}


id: GO:0044229
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The region between the inner (cytoplasmic) and outer host membrane (Gram-negative Bacteria) or inner host membrane and host cell wall (Fungi).","definition_xrefs":["GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell part","termid":"GO:0033643"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell periplasmic space","termid":"GO:0044229"}


id: PBO:0030883
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_microtubule_cytoskeleton_organization_during_vegetative_growth","termid":"PBO:0030883"}


id: PR:O74984
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC338.06c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74984"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein homolog C338.06c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC338.06c","synonyms":[{"name":"Spom972h-SPCC338.06c","type":"exact"}],"termid":"PR:O74984"}


id: PBO:0071439
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L31 pseudogene 45","termid":"PBO:0071439"}


id: GO:0030394
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving fructoseglycine, a fructose molecule containing a glycine group in place of a hydroxyl group.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified amino acid metabolic process","termid":"GO:0006575"},{"relation_name":"is_a","term_name":"carboxylic acid metabolic process","termid":"GO:0019752"},{"relation_name":"is_a","term_name":"fructosamine metabolic process","termid":"GO:0030389"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"fructoseglycine metabolic process","synonyms":[{"name":"fructoseglycine metabolism","type":"exact"}],"termid":"GO:0030394"}


id: GO:0051554
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving flavonols, a member of a class of vascular pigments formed by consecutive oxidative processes from the flavonoid intermediates flavanones and dihydroflavonols. Flavonols are the most widespread of the flavonoids and have a wide array of physiological activities.","definition_xrefs":["PMID:11402179"],"direct_ancestors":[{"relation_name":"is_a","term_name":"flavone metabolic process","termid":"GO:0051552"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"flavonol metabolic process","synonyms":[{"name":"flavonol metabolism","type":"exact"}],"termid":"GO:0051554"}


id: MONDO:0044749
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"X-linked congenital stationary night blindness (XLCSNB) is a disorder of the retina. People with this condition typically experience night blindness and other vision problems, including loss of sharpness (reduced visual acuity), severe nearsightedness (myopia), nystagmus,and strabismus. Color vision is typically not affected. These vision problems are usually evident at birth, but tend to be stable (stationary) over time. There aretwo major types of XLCSNB: the complete form and the incomplete form. Bothtypes have very similar signs and symptoms. However, everyone with the complete form has night blindness, while not all people with the incomplete form have night blindness. The types are distinguished by their genetic cause.","definition_xrefs":["GARD:0003995"],"direct_ancestors":[{"relation_name":"is_a","term_name":"X-linked disease","termid":"MONDO:0000425"},{"relation_name":"is_a","term_name":"congenital nervous system disorder","termid":"MONDO:0002320"},{"relation_name":"is_a","term_name":"congenital stationary night blindness","termid":"MONDO:0016293"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0002320","MONDO:0005328"],"is_obsolete":false,"name":"X-linked congenital stationary night blindness","secondary_identifiers":["GARD:3995"],"synonyms":[{"name":"X-linked CSNB","type":"exact"},{"name":"XLCSNB","type":"exact"},{"name":"congenital stationary night blindness, X-linked","type":"exact"}],"termid":"MONDO:0044749","xrefs":{"Monarch":{"xref_id":"0044749"}}}


id: SO:0000621
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"This type of promoter recruits RNA pol III to transcribe predominantly noncoding RNAs. This promoter contains a proximal sequence element (PSE) and a TATA box upstream of the gene that it regulates. Transcription can also be activated by a distal sequence element (DSE), which is located further upstream. ","definition_xrefs":["PMID:12381659"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNApol_III_promoter","termid":"SO:0000171"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNApol_III_promoter_type_3","synonyms":[{"name":"RNApol III promoter type 3","type":"exact"}],"termid":"SO:0000621"}


id: PBO:0075217
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nuclear ribonucleoprotein 13","termid":"PBO:0075217"}


id: PBO:0061243
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NOP58 ribonucleoprotein","termid":"PBO:0061243"}


id: PBO:0066978
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 281","termid":"PBO:0066978"}


id: MONDO:0003719
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplasm (disease) that involves the renal pelvis.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kidney neoplasm","termid":"MONDO:0021163"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"renal pelvis neoplasm","secondary_identifiers":["SCTID:126881002","UMLS:C0346260","DOID:5977","ICD9:239.5","NCIT:C8404","MEDGEN:138049"],"synonyms":[{"name":"kidney pelvis neoplasm","type":"exact"},{"name":"kidney pelvis tumor","type":"exact"},{"name":"kidney pelvis tumour","type":"exact"},{"name":"neoplasm of kidney pelvis","type":"exact"},{"name":"neoplasm of renal pelvis","type":"exact"},{"name":"neoplasm of the kidney pelvis","type":"exact"},{"name":"neoplasm of the renal pelvis","type":"exact"},{"name":"renal pelvis neoplasm","type":"exact"},{"name":"renal pelvis neoplasm (disease)","type":"exact"},{"name":"renal pelvis tumor","type":"exact"},{"name":"renal pelvis tumour","type":"exact"},{"name":"tumor of kidney pelvis","type":"exact"},{"name":"tumor of renal pelvis","type":"exact"},{"name":"tumor of the kidney pelvis","type":"exact"},{"name":"tumor of the renal pelvis","type":"exact"},{"name":"tumour of kidney pelvis","type":"exact"},{"name":"tumour of renal pelvis","type":"exact"},{"name":"tumour of the kidney pelvis","type":"exact"},{"name":"tumour of the renal pelvis","type":"exact"}],"termid":"MONDO:0003719","xrefs":{"Monarch":{"xref_id":"0003719"}}}


id: MONDO:0020045
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete autosomal recessive cerebellar ataxia due to a DNA repair defect (obsolete MONDO:0020045)","secondary_identifiers":["Orphanet:98097"],"termid":"MONDO:0020045","xrefs":{"Monarch":{"xref_id":"0020045"}}}


id: GO:0047221
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: sn-glycerol 3-phosphate + UDP-D-galactose = 2-(alpha-D-galactosyl)-sn-glycerol 3-phosphate + H+ + UDP.","definition_xrefs":["RHEA:14285","EC:2.4.1.137"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-galactosyltransferase activity","termid":"GO:0035250"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016757"],"is_obsolete":false,"name":"sn-glycerol-3-phosphate 2-alpha-galactosyltransferase activity","secondary_identifiers":["MetaCyc:2.4.1.137-RXN","KEGG_REACTION:R00853"],"synonyms":[{"name":"FPS","type":"related"},{"name":"UDP-galactose, sn-3-glycerol phosphate:1->2' galactosyltransferase activity","type":"related"},{"name":"UDP-galactose:sn-glycerol-3-phosphate 2-alpha-D-galactosyltransferase activity","type":"related"},{"name":"UDP-galactose:sn-glycerol-3-phosphate-2-D-galactosyl transferase activity","type":"related"},{"name":"UDPgalactose:sn-glycerol-3-phosphate 2-alpha-D-galactosyltransferase activity","type":"related"},{"name":"floridoside phosphate synthase activity","type":"related"},{"name":"floridoside phosphate synthetase activity","type":"related"},{"name":"floridoside-phosphate synthase activity","type":"related"}],"termid":"GO:0047221"}


id: GO:0102705
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H+ + L-serine = ethanolaminium(1+) + carbon dioxide.","definition_xrefs":["GOC:pz","PMID:11461929","RHEA:45824"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016829","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"serine decarboxylase activity","secondary_identifiers":["MetaCyc:RXN-5641"],"termid":"GO:0102705"}


id: PATO:0000983
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A permeability quality inhering in a bearer by virtue of the bearer's being incapable of being permeated or pervaded by a liquid (as by osmosis or diffusion).","definition_xrefs":["Biology-online:Biology-online"],"direct_ancestors":[{"relation_name":"is_a","term_name":"permeability","termid":"PATO:0000970"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"impermeable","termid":"PATO:0000983"}


id: MONDO:0001883
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A condition that is caused by recurring atheroembolism in the lower extremities. It is characterized by cyanotic discoloration of the toes, usually the first, fourth, and fifth toes. Discoloration may extend to the lateral aspect of the foot. Despite the gangrene-like appearance, blue toes may respond to conservative therapy without amputation.","definition_xrefs":["MESH:D018438"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cholesterol embolism","termid":"MONDO:0005568"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"blue toe syndrome","secondary_identifiers":["DOID:14121","MEDGEN:66940","UMLS:C0242645"],"synonyms":[{"name":"purple toe syndrome","type":"exact"},{"name":"trash foot","type":"exact"},{"name":"warfarin blue toe syndrome","type":"exact"}],"termid":"MONDO:0001883","xrefs":{"Monarch":{"xref_id":"0001883"}}}


id: MONDO:0022423
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete alpha-2 deficient collagen disease (obsolete MONDO:0022423)","termid":"MONDO:0022423","xrefs":{"Monarch":{"xref_id":"0022423"}}}


id: PBO:0029046
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_sodium_import","termid":"PBO:0029046"}


id: PBO:0028376
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_oxanine_DNA_N-glycosylase_activity","termid":"PBO:0028376"}


id: PR:O74455
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 6-phosphogluconolactonase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11054:SF0","PRO:DNx","OMA:SCHPO04412"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6-phosphogluconolactonase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC16C4.10","secondary_identifiers":["UniProtKB:O74455"],"synonyms":[{"name":"6PGL (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-PGLS","type":"exact"}],"termid":"PR:O74455"}


id: GO:0102516
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: delphinidin 3-O-beta-D-glucoside + 1-O-feruloyl-beta-D-glucose = delphinidin 3,7-di O-beta-D-glucoside + ferulate + H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete delphinidin 3-O-glucoside 7-O-glucosyltransferase (feruloyl-glucose dependent) activity (obsolete GO:0102516)","termid":"GO:0102516"}


id: PBO:0017639
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CENP-P ortholog Fta2","termid":"PBO:0017639"}


id: GO:2000616
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of histone H3-K9 acetylation.","definition_xrefs":["GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of histone H3-K9 acetylation (obsolete GO:2000616)","synonyms":[{"name":"negative regulation of histone H3 acetylation at K9","type":"exact"},{"name":"negative regulation of histone H3K9 acetylation","type":"exact"}],"termid":"GO:2000616"}


id: MONDO:0859360
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive cerebellar ataxia","termid":"MONDO:0015244"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0006025"],"is_obsolete":false,"name":"spinocerebellar ataxia, autosomal recessive 33","secondary_identifiers":["MEDGEN:1824070","UMLS:C5774297","OMIM:620208","DOID:0070414"],"termid":"MONDO:0859360","xrefs":{"Monarch":{"xref_id":"0859360"}}}


id: MONDO:0975747
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spermatogenic failure","termid":"MONDO:0004983"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"spermatogenic failure 95","secondary_identifiers":["OMIM:620917","DOID:0070594"],"termid":"MONDO:0975747","xrefs":{"Monarch":{"xref_id":"0975747"}}}


id: GO:0047691
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: aspulvinone E + 2 dimethylallyl diphosphate = aspulvinone H + 2 diphosphate.","definition_xrefs":["RHEA:13809","EC:2.5.1.35"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity, transferring alkyl or aryl (other than methyl) groups","termid":"GO:0016765"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016765"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0016765","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"aspulvinone dimethylallyltransferase activity","secondary_identifiers":["KEGG_REACTION:R03799","MetaCyc:ASPULVINONE-DIMETHYLALLYLTRANSFERASE-RXN"],"synonyms":[{"name":"dimethylallyl pyrophosphate:aspulvinone dimethylallyltransferase activity","type":"related"},{"name":"dimethylallyl-diphosphate:aspulvinone-E dimethylallyltransferase activity","type":"related"}],"termid":"GO:0047691"}


id: GO:1905564
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of vascular endothelial cell proliferation.","definition_xrefs":["GOC:nc","GO_REF:0000058","GOC:BHF","GOC:TermGenie","PMID:23201774","GOC:BHF_telomere"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of endothelial cell proliferation","termid":"GO:0001938"},{"relation_name":"is_a","term_name":"regulation of vascular endothelial cell proliferation","termid":"GO:1905562"},{"relation_name":"positively_regulates","term_name":"vascular endothelial cell proliferation","termid":"GO:0101023"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of vascular endothelial cell proliferation","synonyms":[{"name":"activation of vascular endothelial cell proliferation","type":"narrow"},{"name":"up regulation of vascular endothelial cell proliferation","type":"exact"},{"name":"up-regulation of vascular endothelial cell proliferation","type":"exact"},{"name":"upregulation of vascular endothelial cell proliferation","type":"exact"}],"termid":"GO:1905564"}


id: PBO:0047381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box protein 15","termid":"PBO:0047381"}


id: MONDO:0019643
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Transient pseudohypoaldosteronism is a renal tubulopathy characterized by renal tubular resistance to aldosterone, characterized by hyponatremia, metabolic acidosis and hyperkalemia and manifesting as dehydration, secondary to urinary tract malformation and infections in infants.","definition_xrefs":["Orphanet:93164"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pseudohypoaldosteronism","termid":"MONDO:0018638"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"transient pseudohypoaldosteronism","secondary_identifiers":["GARD:19176","SCTID:717263009","UMLS:C4273962","icd11.foundation:225064822","MEDGEN:900190"],"synonyms":[{"name":"TPHA","type":"exact"}],"termid":"MONDO:0019643","xrefs":{"Monarch":{"xref_id":"0019643"}}}


id: PBO:0002524
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.2.1.3","termid":"PBO:0002524"}


id: GO:0004136
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2'-deoxyadenosine + ATP = ADP + dAMP + 2 H+.","definition_xrefs":["EC:2.7.1.76","RHEA:23452"],"direct_ancestors":[{"relation_name":"is_a","term_name":"deoxynucleoside kinase activity","termid":"GO:0019136"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016301"}],"interesting_parent_ids":["GO:0016301","GO:0016740","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"deoxyadenosine kinase activity","secondary_identifiers":["KEGG_REACTION:R02089","MetaCyc:DEOXYADENOSINE-KINASE-RXN"],"synonyms":[{"name":"ATP:deoxyadenosine 5'-phosphotransferase activity","type":"related"},{"name":"deoxyadenosine kinase (phosphorylating)","type":"related"},{"name":"purine-deoxyribonucleoside kinase activity","type":"related"}],"termid":"GO:0004136"}


id: GO:0042391
data:
  {"annotated_genes":["SJAG_01541","SJAG_02883"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[67228,89856],"is_not":false,"summary":null,"term":"GO:0042391"}]},"cv_name":"biological_process","definition":"Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane.","definition_xrefs":["GOC:jl","GOC:tb","ISBN:0198506732","GOC:mtg_cardio"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of biological quality","termid":"GO:0065008"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01541":null,"SJAG_02883":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of membrane potential","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null},"termid":"GO:0042391","terms_by_termid":{"GO:0042391":null}}


id: GO:0004154
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a 7,8-dihydropteridine compound + O2 = an oxidized 7,8-dihydropteridine compound + H2O2. Specific substrates and their fully oxidized products include: 7,8-dihydropteridin/pterin, 7,8-dihydrobiopterin/biopterin, 7,8-dihydroxanthopterin/xanthopterin and sepiapterin/oxidized sepiapterin.","definition_xrefs":["PMID:1745247","PMID:38786926","GOC:sjm","PMID:6815189"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor","termid":"GO:0016647"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"dihydropterin oxidase activity","termid":"GO:0004154"}


id: PBO:0003512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat protein, human WDR6 family, implicated in cell cycle","termid":"PBO:0003512"}


id: PBO:0056117
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LYR motif containing 2","termid":"PBO:0056117"}


id: GO:0102312
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-coumaryl-CoA + 2-oxoglutarate + O2 = 2,4-dihydroxycinnamoyl-CoA + succinate + carbon dioxide.","definition_xrefs":["PMID:22168819","PMID:22169019","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2-oxoglutarate-dependent dioxygenase activity","termid":"GO:0016706"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"4-coumaroyl 2'-hydroxylase activity","secondary_identifiers":["EC:1.14.11.62","MetaCyc:RXN-12963","RHEA:57868"],"termid":"GO:0102312"}


id: GO:0002461
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Tolerance induction dependent upon an immune response, typically a response by a mature T or B cell in the periphery resulting tolerance towards an antigen via induction of anergy, cellular deletion, or regulatory T cell activation.","definition_xrefs":["GO_REF:0000022","ISBN:0781735149","GOC:jal"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains","termid":"GO:0002460"},{"relation_name":"is_a","term_name":"tolerance induction","termid":"GO:0002507"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"tolerance induction dependent upon immune response","synonyms":[{"name":"immune response-dependent tolerance induction","type":"exact"}],"termid":"GO:0002461"}


id: PBO:0064245
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase D family member 4","termid":"PBO:0064245"}


id: GO:0046521
data:
  {"annotated_genes":["SJAG_01219","SJAG_00519"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90173,109130],"is_not":false,"summary":null,"term":"GO:0046521"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of sphingoids, any of a class of compounds comprising sphinganine and its homologues and stereoisomers, and derivatives of these compounds.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sphingolipid catabolic process","termid":"GO:0030149"},{"relation_name":"is_a","term_name":"sphingoid metabolic process","termid":"GO:0046519"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00519":null,"SJAG_01219":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"sphingoid catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"sphingoid breakdown","type":"exact"},{"name":"sphingoid catabolism","type":"exact"},{"name":"sphingoid degradation","type":"exact"}],"termid":"GO:0046521","terms_by_termid":{"GO:0046521":null}}


id: MONDO:0004405
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An adenocarcinoma arising from Barrett metaplastic epithelium in the esophagus. There is evidence supporting the idea that the Barrett adenocarcinomas develop through a stepwise progression through intestinal metaplastic epithelium to epithelial dysplasia to malignancy. Adenocarcinomas arising in the setting of Barrett esophagus are typically papillary and/or tubular. In terms of grading, they are well or moderately differentiated adenocarcinomas. -- 2002","definition_xrefs":["NCIT:C7027"],"direct_ancestors":[{"relation_name":"is_a","term_name":"esophageal adenocarcinoma","termid":"MONDO:0005028"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0004335"],"is_obsolete":false,"name":"Barrett adenocarcinoma","secondary_identifiers":["EFO:1001939","DOID:7941","SCTID:721617001","UMLS:C1332460","icd11.foundation:1934528268","MEDGEN:272350"],"synonyms":[{"name":"Barrett adenocarcinoma","type":"exact"},{"name":"Barrett's adenocarcinoma","type":"exact"},{"name":"adenocarcinoma arising in Barrett's mucosa","type":"exact"}],"termid":"MONDO:0004405","xrefs":{"Monarch":{"xref_id":"0004405"}}}


id: PBO:0029606
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-transporter_activity_phenotype","termid":"PBO:0029606"}


id: PBO:0054901
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2315","termid":"PBO:0054901"}


id: MONDO:0033614
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary spastic paraplegia","termid":"MONDO:0019064"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"spastic paraplegia 83, autosomal recessive","secondary_identifiers":["MEDGEN:1759445","OMIM:619027","DOID:0112346","Orphanet:631076","UMLS:C5436637"],"synonyms":[{"name":"SPG83","type":"exact"},{"name":"autosomal recessive spastic paraplegia type 83","type":"exact"}],"termid":"MONDO:0033614","xrefs":{"Monarch":{"xref_id":"0033614"}}}


id: GO:0034881
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: citrazinate + H2O = cis-aconitamide.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete citrazinate hydrolase activity (obsolete GO:0034881)","termid":"GO:0034881"}


id: MONDO:0022810
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Combarros Calleja Leno syndrome","termid":"MONDO:0022810","xrefs":{"Monarch":{"xref_id":"0022810"}}}


id: PBO:0091882
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2-dehydropantoate 2-reductase Pan5","termid":"PBO:0091882"}


id: GO:1902648
data:
  {"annotated_genes":["SJAG_02613"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[117835],"is_not":false,"summary":null,"term":"GO:1902648"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process.","definition_xrefs":["GO_REF:0000058","GOC:di","GOC:TermGenie","PMID:22562153"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of phosphatidylinositol biosynthetic process","termid":"GO:0010513"},{"relation_name":"is_a","term_name":"regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process","termid":"GO:1902646"},{"relation_name":"positively_regulates","term_name":"1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process","termid":"GO:1902635"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02613":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"positive regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate anabolism","type":"narrow"},{"name":"activation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthesis","type":"narrow"},{"name":"activation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process","type":"narrow"},{"name":"activation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate formation","type":"narrow"},{"name":"activation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate synthesis","type":"narrow"},{"name":"positive regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate anabolism","type":"exact"},{"name":"positive regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthesis","type":"exact"},{"name":"positive regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate formation","type":"exact"},{"name":"positive regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate synthesis","type":"exact"},{"name":"up regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate anabolism","type":"exact"},{"name":"up regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthesis","type":"exact"},{"name":"up regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process","type":"exact"},{"name":"up regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate formation","type":"exact"},{"name":"up regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate synthesis","type":"exact"},{"name":"up-regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate anabolism","type":"exact"},{"name":"up-regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthesis","type":"exact"},{"name":"up-regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process","type":"exact"},{"name":"up-regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate formation","type":"exact"},{"name":"up-regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate synthesis","type":"exact"},{"name":"upregulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate anabolism","type":"exact"},{"name":"upregulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthesis","type":"exact"},{"name":"upregulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process","type":"exact"},{"name":"upregulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate formation","type":"exact"},{"name":"upregulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate synthesis","type":"exact"}],"termid":"GO:1902648","terms_by_termid":{"GO:1902648":null}}


id: PBO:0059894
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND1 pseudogene 17","termid":"PBO:0059894"}


id: MONDO:0004693
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant epithelial neoplasm confined to the squamous epithelium, without invasion of the underlying tissues.","definition_xrefs":["NCIT:C27093"],"direct_ancestors":[{"relation_name":"is_a","term_name":"in situ carcinoma","termid":"MONDO:0004647"},{"relation_name":"is_a","term_name":"squamous cell carcinoma","termid":"MONDO:0005096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"squamous carcinoma in situ","secondary_identifiers":["UMLS:C0334245","ICDO:8077/2","MEDGEN:83116","ICDO:8070/2"],"synonyms":[{"name":"CIN III","type":"narrow"},{"name":"CIN III - carcinoma in situ of cervix","type":"narrow"},{"name":"CIN III - severe dyskaryosis","type":"narrow"},{"name":"carcinoma in situ of cervix","type":"narrow"},{"name":"carcinoma in situ of uterine cervix","type":"narrow"},{"name":"carcinoma, squamous cell, in situ, malignant","type":"exact"},{"name":"cervical intraepithelial neoplasia grade III with severe dysplasia","type":"narrow"},{"name":"cervix Ca in situ","type":"narrow"},{"name":"epidermoid carcinoma in situ","type":"exact"},{"name":"epidermoid cell carcinoma in situ","type":"exact"},{"name":"grade 3 SIN","type":"exact"},{"name":"grade 3 squamous intraepithelial neoplasia","type":"exact"},{"name":"grade III SIN","type":"exact"},{"name":"grade III squamous intraepithelial neoplasia","type":"exact"},{"name":"intraepithelial squamous cell carcinoma","type":"exact"},{"name":"severe dysplasia of cervix","type":"narrow"},{"name":"severe dysplasia of the cervix uteri","type":"narrow"},{"name":"squamous carcinoma in situ","type":"exact"},{"name":"squamous cell carcinoma in situ","type":"exact"},{"name":"squamous cell carcinoma in-situ","type":"exact"},{"name":"squamous intraepithelial neoplasia, grade III","type":"narrow"},{"name":"stage 0 squamous cell carcinoma","type":"exact"},{"name":"stage 0 uterine cervix carcinoma","type":"narrow"},{"name":"uterine cervix in situ carcinoma","type":"narrow"}],"termid":"MONDO:0004693","xrefs":{"Monarch":{"xref_id":"0004693"}}}


id: GO:0075317
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that leads to the development of ascus, a sac-like structure produced by fungi of the phylum Ascomycota (sac fungi) in which sexually produced spores (ascospores), usually four or eight in number, are formed.","definition_xrefs":["GOC:mcc","GOC:mah","GOC:pamgo_curators","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spore-bearing structure development","termid":"GO:0075259"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ascus development","termid":"GO:0075317"}


id: GO:0071829
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The disaggregation of a plasma lipoprotein particle into its constituent components.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-lipid complex disassembly","termid":"GO:0032987"},{"relation_name":"is_a","term_name":"plasma lipoprotein particle organization","termid":"GO:0071827"},{"relation_name":"part_of","term_name":"regulation of plasma lipoprotein particle levels","termid":"GO:0097006"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"plasma lipoprotein particle disassembly","termid":"GO:0071829"}


id: PBO:0043359
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calsyntenin 1","termid":"PBO:0043359"}


id: GO:0043954
data:
  {"annotated_genes":["SJAG_04841","SJAG_03812"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[64751],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071788"},{"annotations":[97610],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0062195"}]},"cv_name":"biological_process","definition":"The organization process that preserves a cellular component in a stable functional or structural state.","definition_xrefs":["GOC:dph","GOC:mah","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component organization","termid":"GO:0016043"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03812":null,"SJAG_04841":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular component maintenance","references_by_uniquename":{"GO_REF:0000104":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0071956"],"synonyms":[{"name":"cellular component maintenance at cellular level","type":"exact"}],"termid":"GO:0043954","terms_by_termid":{"GO:0062195":null,"GO:0071788":null}}


id: PBO:0001104
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptionally regulated by ammonia","termid":"PBO:0001104"}


id: PBO:0003013
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S. pombe specific DUF999 protein family 4","termid":"PBO:0003013"}


id: GO:0034033
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a purine nucleoside bisphosphate, a compound consisting of a purine base linked to a deoxyribose or ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on the sugar.","definition_xrefs":["GOC:mah","GOC:pde"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside bisphosphate biosynthetic process","termid":"GO:0033866"},{"relation_name":"is_a","term_name":"purine nucleoside bisphosphate metabolic process","termid":"GO:0034032"},{"relation_name":"is_a","term_name":"purine-containing compound biosynthetic process","termid":"GO:0072522"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0055086"],"is_obsolete":false,"name":"purine nucleoside bisphosphate biosynthetic process","synonyms":[{"name":"purine nucleoside bisphosphate anabolism","type":"exact"},{"name":"purine nucleoside bisphosphate biosynthesis","type":"exact"},{"name":"purine nucleoside bisphosphate formation","type":"exact"},{"name":"purine nucleoside bisphosphate synthesis","type":"exact"}],"termid":"GO:0034033"}


id: SO:1000042
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A chromosome structure variant where a monocentric element is caused by the fusion of two chromosome arms.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome_structure_variation","termid":"SO:1000183"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"compound_chromosome","synonyms":[{"name":"compound chromosome","type":"exact"}],"termid":"SO:1000042"}


id: PBO:0075243
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorting nexin 13","termid":"PBO:0075243"}


id: PBO:0073532
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SH3 domain containing GRB2 like 3, endophilin A3","termid":"PBO:0073532"}


id: PBO:0028948
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_glutamate-cysteine_ligase_activity","termid":"PBO:0028948"}


id: PBO:0041420
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 8 putative open reading frame 17","termid":"PBO:0041420"}


id: PBO:0074675
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 59B","termid":"PBO:0074675"}


id: GO:0070025
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to carbon monoxide (CO).","definition_xrefs":["GOC:ecd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"small molecule binding","termid":"GO:0036094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"carbon monoxide binding","synonyms":[{"name":"CO binding","type":"exact"}],"termid":"GO:0070025"}


id: FYPO:0006318
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the extent of DNA resection upstream of a stalled replication fork is lower than normal. DNA resection is the 5'-to-3' degradation of one strand of DNA, leaving a stretch of single-stranded DNA.","definition_xrefs":["PomBase:mah","PMID:29215009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal replication fork processing","termid":"FYPO:0003586"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000293"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000293","FYPO:0005447","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"decreased DNA resection during replication fork processing","synonyms":[{"name":"decreased DNA resection during replication fork processing during mitotic cell cycle","type":"related"},{"name":"decreased DNA resection during replication fork processing during vegetative growth","type":"exact"},{"name":"decreased DNA resectioning during replication fork processing","type":"exact"},{"name":"decreased extent of DNA resection during replication fork processing","type":"exact"},{"name":"decreased extent of exonucleolytic DNA cleavage during replication fork processing","type":"exact"},{"name":"reduced DNA resection during replication fork processing","type":"exact"}],"termid":"FYPO:0006318"}


id: GO:0009288
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope.","definition_xrefs":["GOC:mtg_sensu","GOC:jh2","GOC:krc","PMID:7787060","GOC:cilia","Wikipedia:Flagellum#Bacterial"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell projection","termid":"GO:0042995"},{"relation_name":"is_a","term_name":"membraneless organelle","termid":"GO:0043228"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"bacterial-type flagellum","synonyms":[{"name":"flagellin-based flagellum","type":"exact"}],"termid":"GO:0009288"}


id: PBO:0055966
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat and coiled-coil centrosomal protein 1","termid":"PBO:0055966"}


id: PBO:0068516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 108, pseudogene","termid":"PBO:0068516"}


id: MONDO:0016334
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete neuromuscular disease with dilated cardiomyopathy (obsolete MONDO:0016334)","secondary_identifiers":["Orphanet:217610"],"termid":"MONDO:0016334","xrefs":{"Monarch":{"xref_id":"0016334"}}}


id: PBO:0005858
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S acidic ribosomal protein Rpp1-3","termid":"PBO:0005858"}


id: PBO:0058115
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4330","termid":"PBO:0058115"}


id: GO:0102982
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-alpha-D-glucose + NAD = H+ + UDP-3-keto-alpha-D-glucose + NADH.","definition_xrefs":["GOC:pz","PMID:11278540"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"UDP-3-dehydro-alpha-D-glucose dehydrogenase activity","secondary_identifiers":["MetaCyc:RXN-9578","RHEA:35755"],"termid":"GO:0102982"}


id: GO:1904213
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of iodide transmembrane transport.","definition_xrefs":["PMID:20392814","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of inorganic anion transmembrane transport","termid":"GO:1903796"},{"relation_name":"is_a","term_name":"negative regulation of anion transmembrane transport","termid":"GO:1903960"},{"relation_name":"is_a","term_name":"negative regulation of iodide transport","termid":"GO:1904202"},{"relation_name":"is_a","term_name":"regulation of iodide transmembrane transport","termid":"GO:1904212"},{"relation_name":"negatively_regulates","term_name":"iodide transmembrane transport","termid":"GO:1904200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"negative regulation of iodide transmembrane transport","synonyms":[{"name":"down regulation of iodide transmembrane transport","type":"exact"},{"name":"down-regulation of iodide transmembrane transport","type":"exact"},{"name":"downregulation of iodide transmembrane transport","type":"exact"},{"name":"inhibition of iodide transmembrane transport","type":"narrow"}],"termid":"GO:1904213"}


id: GO:0051996
data:
  {"annotated_genes":["SJAG_02719"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[76620],"is_not":false,"summary":null,"term":"GO:0051996"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 (2E,6E)-farnesyl diphosphate + H+ + NAD(P)H = 2 diphosphate + NAD(P)+ + squalene.","definition_xrefs":["EC:2.5.1.21"],"direct_ancestors":[{"relation_name":"is_a","term_name":"prenyltransferase activity","termid":"GO:0004659"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02719":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016765"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016765"],"is_obsolete":false,"name":"squalene synthase [NAD(P)H] activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:RXN66-281"],"synonyms":[{"name":"farnesyl-diphosphate farnesyltransferase activity","type":"narrow"},{"name":"farnesyltransferase activity","type":"broad"},{"name":"presqualene synthase activity","type":"exact"},{"name":"presqualene-diphosphate synthase activity","type":"exact"},{"name":"squalene synthase activity","type":"exact"},{"name":"squalene synthetase activity","type":"related"}],"termid":"GO:0051996","terms_by_termid":{"GO:0051996":null}}


id: PBO:0017513
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gluconate transmembrane transporter inducer Gti1","termid":"PBO:0017513"}


id: MONDO:0005702
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A subcutaneous mycosis that is a chronic subcutaneous fungal infection, which presents as nodular or verrucoid, ulcerated, or crusted skin lesions on exposed areas of skin caused by Fonsecaea pedrosoi, Fonsecaea compacta, Cladophialophora carrionii or Phialophora verrucosa. Histological examination reveals muriform cells (with perpendicular septations) or thick walled, dark-colored, rounded forms (copper pennies) that are characteristic of this infection.","definition_xrefs":["EFO:0007207"],"gene_count":0,"genotype_count":0,"name":"obsolete chromoblastomycosis (obsolete MONDO:0005702)","termid":"MONDO:0005702","xrefs":{"Monarch":{"xref_id":"0005702"}}}


id: PBO:0069474
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 741, pseudogene","termid":"PBO:0069474"}


id: PBO:0076873
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed 22","termid":"PBO:0076873"}


id: MONDO:0002669
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An adenocarcinoma arising from the ampulla of Vater. Morphologically, it is characterized by the presence of mucin-containing signet-ring cells.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extrahepatic bile duct signet ring cell carcinoma","termid":"MONDO:0002664"},{"relation_name":"is_a","term_name":"ampulla of vater adenocarcinoma","termid":"MONDO:0002670"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0002515"}],"interesting_parent_ids":["MONDO:0002515","MONDO:0004992","MONDO:0004335"],"is_obsolete":false,"name":"ampullary signet ring cell adenocarcinoma","secondary_identifiers":["UMLS:C1332249","NCIT:C6656","MEDGEN:231057","DOID:3501"],"synonyms":[{"name":"ampulla of Vater signet Ring cell carcinoma","type":"exact"},{"name":"ampullary signet Ring cell carcinoma","type":"exact"},{"name":"ampullary signet ring cell carcinoma","type":"exact"}],"termid":"MONDO:0002669","xrefs":{"Monarch":{"xref_id":"0002669"}}}


id: PBO:0051519
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 1 receptor type 1","termid":"PBO:0051519"}


id: GO:0033568
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with lactoferrin and delivering lactoferrin into the cell via endocytosis. Lactoferrin is an iron-binding glycoprotein which binds ferric iron most efficiently at low pH.","definition_xrefs":["GOC:mlg","PMID:16261254","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cargo receptor activity","termid":"GO:0038024"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038024"}],"interesting_parent_ids":["GO:0038024","GO:0003674"],"is_obsolete":false,"name":"lactoferrin receptor activity","termid":"GO:0033568"}


id: PR:O74758
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC17D11.03c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74758"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C17D11.03c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC17D11.03c","synonyms":[{"name":"Spom972h-SPBC17D11.03c","type":"exact"}],"termid":"PR:O74758"}


id: SO:0000964
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Structural unit composed of a self-replicating, double-stranded, linear RNA molecule.","definition_xrefs":["SO:ma"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"linear","termid":"SO:0000987"},{"relation_name":"is_a","term_name":"double_stranded_RNA_chromosome","termid":"SO:0000965"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"linear_double_stranded_RNA_chromosome","synonyms":[{"name":"linear double stranded RNA chromosome","type":"exact"}],"termid":"SO:0000964"}


id: PBO:0045855
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 alpha 1 pseudogene 45","termid":"PBO:0045855"}


id: PBO:0089360
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane PTR family peptide transmembrane transporter Ptr2","termid":"PBO:0089360"}


id: GO:0032541
data:
  {"annotated_genes":["SJAG_01460","SJAG_00825","SJAG_02683","SJAG_03609","SJAG_02019","SJAG_03795","SJAG_00790","SJAG_03750","SJAG_00355","SJAG_04417","SJAG_01329","SJAG_03718","SJAG_02613","SJAG_03247","SJAG_01006","SJAG_00261","SJAG_00175","SJAG_03162","SJAG_01168","SJAG_01848","SJAG_00053","SJAG_03170","SJAG_04049","SJAG_03943","SJAG_04413","SJAG_04059","SJAG_01564"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[70636,70762,72327,72783,73690,77303,88811,89105,91820,95657,96011,97781,103764,107701,109929,112365,114484,114705,117831,118975,119176,119244,119553,119554],"is_not":false,"summary":null,"term":"GO:0032541"},{"annotations":[93433],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0099021"},{"annotations":[90745,104684],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0160219"}]},"cv_name":"cellular_component","definition":"A cortical network of highly dynamic tubules that are juxtaposed to the plasma membrane and undergo ring closure and tubule-branching movements.","definition_xrefs":["PMID:17686782","GOC:se","PMID:10931860"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endoplasmic reticulum tubular network","termid":"GO:0071782"},{"relation_name":"part_of","term_name":"cell cortex","termid":"GO:0005938"}],"gene_count":27,"genes_by_uniquename":{"SJAG_00053":null,"SJAG_00175":null,"SJAG_00261":null,"SJAG_00355":null,"SJAG_00790":null,"SJAG_00825":null,"SJAG_01006":null,"SJAG_01168":null,"SJAG_01329":null,"SJAG_01460":null,"SJAG_01564":null,"SJAG_01848":null,"SJAG_02019":null,"SJAG_02613":null,"SJAG_02683":null,"SJAG_03162":null,"SJAG_03170":null,"SJAG_03247":null,"SJAG_03609":null,"SJAG_03718":null,"SJAG_03750":null,"SJAG_03795":null,"SJAG_03943":null,"SJAG_04049":null,"SJAG_04059":null,"SJAG_04413":null,"SJAG_04417":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005783"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005938"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0005783","GO:0005938"],"is_obsolete":false,"name":"cortical endoplasmic reticulum","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:33495454":null},"synonyms":[{"name":"ER-PM peripheral junction","type":"broad"},{"name":"cortical ER","type":"exact"},{"name":"peripheral ER","type":"related"},{"name":"peripheral endoplasmic reticulum","type":"related"}],"termid":"GO:0032541","terms_by_termid":{"GO:0032541":null,"GO:0099021":null,"GO:0160219":null}}


id: GO:0071106
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which adenosine 3',5'-bisphosphate is transported across a membrane.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine ribonucleotide transport","termid":"GO:0015868"},{"relation_name":"is_a","term_name":"adenine nucleotide transport","termid":"GO:0051503"},{"relation_name":"is_a","term_name":"purine-containing compound transmembrane transport","termid":"GO:0072530"},{"relation_name":"is_a","term_name":"nucleotide transmembrane transport","termid":"GO:1901679"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0055085","GO:0006810"],"is_obsolete":false,"name":"adenosine 3',5'-bisphosphate transmembrane transport","synonyms":[{"name":"adenosine 3',5'-bisphosphate membrane transport","type":"exact"},{"name":"adenosine 3',5'-diphosphate transport","type":"exact"},{"name":"adenosine 3'-phosphate-5'-phosphate transmembrane transport","type":"exact"}],"termid":"GO:0071106"}


id: PBO:0059784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CYB pseudogene 10","termid":"PBO:0059784"}


id: GO:0036410
data:
  {"annotated_genes":["SJAG_01385","SJAG_04815","SJAG_02165","SJAG_02629"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[91091,99995,104745,105629],"is_not":false,"summary":null,"term":"GO:0036410"}]},"cv_name":"cellular_component","definition":"A protein complex that can catalyze the acetylation of lysine at position 14 in histone H3, and contains Mst2 as the catalytic subunit. In fission yeast, contains at least Mst2, Nto1, Ptf2, Ptf1 and Eaf6.","definition_xrefs":["GOC:vw","PMID:21289066"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H3-K14 acetyltransferase complex","termid":"GO:0036409"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01385":null,"SJAG_02165":null,"SJAG_02629":null,"SJAG_04815":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005694","GO:0005634"],"is_obsolete":false,"name":"Mst2 histone acetyltransferase complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Mst2 H3K14 acetyltransferase complex","type":"exact"},{"name":"Mst2 complex","type":"exact"},{"name":"Mst2 histone H3K14 acetyltransferase complex","type":"exact"}],"termid":"GO:0036410","terms_by_termid":{"GO:0036410":null}}


id: MONDO:0018470
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Renal agenesis (RA) is a form of renal tract malformation characterized by the complete absence of development of one or both kidneys (unilateral RA or bilateral RA respectively), accompanied by absent ureter(s).","definition_xrefs":["Orphanet:411709"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"},{"relation_name":"is_a","term_name":"inherited kidney disorder","termid":"MONDO:0100191"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"renal agenesis","secondary_identifiers":["OMIMPS:191830","UMLS:C0542519","NCIT:C99041","icd11.foundation:683319223","HP:0008678","DOID:14766","MEDGEN:154237","GARD:9228","NANDO:2200156","HP:0000104","SCTID:204942005"],"synonyms":[{"name":"absent/small kidney","type":"exact"},{"name":"absent/underdeveloped kidney","type":"exact"},{"name":"hereditary renal aplasia","type":"exact"},{"name":"hereditary urogenital adysplasia","type":"exact"},{"name":"renal adysplasia","type":"exact"},{"name":"renal agenesis","type":"exact"},{"name":"renal agenesis (disease)","type":"exact"},{"name":"renal agenesis/hypoplasia","type":"exact"},{"name":"renal aplasia","type":"exact"},{"name":"renal hypodysplasia/aplasia","type":"related"}],"termid":"MONDO:0018470","xrefs":{"Monarch":{"xref_id":"0018470"}}}


id: FYPO:0002185
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A mixed population phenotype in which all cells in a population are inviable, and the population includes a mixture of germinated spores and tapered vegetative cells. The tapered cells arise from division of some of the germinated spores, and may form a microcolony of up to 64 cells.","definition_xrefs":["PomBase:mah","PomBase:vw"],"gene_count":0,"genotype_count":0,"name":"obsolete inviable mixed population including germinated spores and tapered cells (obsolete FYPO:0002185)","synonyms":[{"name":"inviable mixed population including germinated spores and bottle/skittle cells","type":"related"},{"name":"inviable mixed population including germinated spores and skittle-shaped cells","type":"exact"}],"termid":"FYPO:0002185"}


id: GO:0141006
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A transposable element silencing mechanism in which a Piwi-associated RNA (piRNA) triggers heterochromatin assembly. Heterochromatin is a chromatin conformation that is refractory to transcription.","definition_xrefs":["PMID:32381626","PMID:32674113"],"direct_ancestors":[{"relation_name":"is_a","term_name":"piRNA-mediated heterochromatin formation","termid":"GO:0140966"},{"relation_name":"is_a","term_name":"transposable element silencing by heterochromatin formation","termid":"GO:0141005"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006325"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0006325"],"is_obsolete":false,"name":"transposable element silencing by piRNA-mediated heterochromatin formation","secondary_identifiers":["Reactome:R-HSA-9845323"],"synonyms":[{"name":"piRNA-mediated retrotransposon silencing by heterochromatin formation","type":"narrow"}],"termid":"GO:0141006"}


id: GO:0031933
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Heterochromatic regions of the chromosome found at the telomeres.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete telomeric heterochromatin (obsolete GO:0031933)","synonyms":[{"name":"telomeric chromatin","type":"broad"}],"termid":"GO:0031933"}


id: PBO:0057043
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 133a-2","termid":"PBO:0057043"}


id: MONDO:0011829
data:
  {"annotated_genes":["SJAG_06603"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86802],"is_not":false,"summary":null,"term":"MONDO:0011829"}]},"cv_name":"mondo","definition":"Any coenzyme Q10 deficiency in which the cause of the disease is a mutation in the COQ2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"coenzyme Q10 deficiency","termid":"MONDO:0018151"}],"gene_count":1,"genes_by_uniquename":{"SJAG_06603":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005244"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005244","MONDO:0005066","MONDO:0004069"],"is_obsolete":false,"name":"coenzyme Q10 deficiency, primary, 1","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C3551954","MEDGEN:764868","GARD:18378","DOID:0070238","OMIM:607426"],"synonyms":[{"name":"COQ10D1","type":"related"},{"name":"COQ2 coenzyme Q10 deficiency","type":"exact"},{"name":"CoQ deficiency 1","type":"related"},{"name":"Coq10 deficiency, primary, 1","type":"related"},{"name":"coenzyme Q deficiency 1","type":"related"},{"name":"coenzyme Q10 deficiency caused by mutation in COQ2","type":"exact"},{"name":"coenzyme Q10 deficiency, primary, 1","type":"exact"},{"name":"coenzyme Q10 deficiency, primary, type 1","type":"exact"},{"name":"ubiquinone deficiency 1","type":"related"}],"termid":"MONDO:0011829","terms_by_termid":{"MONDO:0011829":null},"xrefs":{"Monarch":{"xref_id":"0011829"}}}


id: MONDO:0014844
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any primary ovarian failure in which the cause of the disease is a mutation in the SYCE1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited primary ovarian failure","termid":"MONDO:0019852"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"premature ovarian failure 12","secondary_identifiers":["OMIM:616947","MEDGEN:934749","UMLS:C4310782"],"synonyms":[{"name":"POF12","type":"exact"},{"name":"SYCE1 primary ovarian failure","type":"exact"},{"name":"premature ovarian failure 12","type":"exact"},{"name":"premature ovarian failure 12; POF12","type":"exact"},{"name":"premature ovarian failure type 12","type":"exact"},{"name":"primary ovarian failure caused by mutation in SYCE1","type":"exact"}],"termid":"MONDO:0014844","xrefs":{"Monarch":{"xref_id":"0014844"}}}


id: GO:0048487
data:
  {"annotated_genes":["SJAG_02270","SJAG_04074"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[67412,77100],"is_not":false,"summary":null,"term":"GO:0048487"}]},"cv_name":"molecular_function","definition":"Binding to the microtubule constituent protein beta-tubulin.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tubulin binding","termid":"GO:0015631"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02270":null,"SJAG_04074":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008092"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0008092","GO:0003674"],"is_obsolete":false,"name":"beta-tubulin binding","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null},"synonyms":[{"name":"beta tubulin binding","type":"exact"}],"termid":"GO:0048487","terms_by_termid":{"GO:0048487":null}}


id: PBO:0063004
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"platelet activating factor acetylhydrolase 1b regulatory subunit 1 pseudogene 1","termid":"PBO:0063004"}


id: PBO:0080259
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 22 pseudogene","termid":"PBO:0080259"}


id: PBO:0057474
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 592","termid":"PBO:0057474"}


id: PBO:0076582
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBC1 domain family member 7","termid":"PBO:0076582"}


id: PBO:0070538
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 4","termid":"PBO:0070538"}


id: GO:0002789
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of antifungal peptide production.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of antimicrobial peptide production","termid":"GO:0002785"},{"relation_name":"is_a","term_name":"regulation of antifungal peptide production","termid":"GO:0002788"},{"relation_name":"negatively_regulates","term_name":"antifungal peptide production","termid":"GO:0002781"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"negative regulation of antifungal peptide production","synonyms":[{"name":"down regulation of antifungal peptide production","type":"exact"},{"name":"down-regulation of antifungal peptide production","type":"exact"},{"name":"downregulation of antifungal peptide production","type":"exact"},{"name":"inhibition of antifungal peptide production","type":"narrow"}],"termid":"GO:0002789"}


id: MOD:00795
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod","definition_xrefs":["Unimod:371","PubMed:11743741"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"Michael addition of hydroxymethylvinyl ketone to cysteine","synonyms":[{"name":"HMVK","type":"related"},{"name":"Michael addition of hydroxymethylvinyl ketone to cysteine","type":"related"}],"termid":"MOD:00795"}


id: PBO:0085938
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; mtc2 is synthetically sick with cdc13-1","termid":"PBO:0085938"}


id: PBO:0063839
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol 4-kinase type 2 alpha","termid":"PBO:0063839"}


id: PBO:0109075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 16 like (pseudogene)","termid":"PBO:0109075"}


id: MONDO:0002404
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A hemangioma arising from the liver.","definition_xrefs":["NCIT:C3869"],"direct_ancestors":[{"relation_name":"is_a","term_name":"benign endocrine neoplasm","termid":"MONDO:0000627"},{"relation_name":"is_a","term_name":"intra-abdominal hemangioma","termid":"MONDO:0002337"},{"relation_name":"is_a","term_name":"liver and intrahepatic bile duct neoplasm","termid":"MONDO:0024477"},{"relation_name":"is_a","term_name":"hepatobiliary benign neoplasm","termid":"MONDO:0859689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0002515"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0002515"],"is_obsolete":false,"name":"liver hemangioma","secondary_identifiers":["MEDGEN:66765","SCTID:93469006","UMLS:C0238246","DOID:271"],"synonyms":[{"name":"angioma of liver","type":"exact"},{"name":"angioma of the liver","type":"related"},{"name":"hemangioma of liver","type":"exact"},{"name":"hemangioma of the liver","type":"related"},{"name":"hepatic angioma","type":"exact"},{"name":"hepatic hemangioma","type":"related"},{"name":"liver angioma","type":"related"},{"name":"liver hemangioma","type":"exact"}],"termid":"MONDO:0002404","xrefs":{"Monarch":{"xref_id":"0002404"}}}


id: GO:0106312
data:
  {"annotated_genes":["SJAG_03712"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[98734],"is_not":false,"summary":null,"term":"GO:0106312"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: (6S)-5-methyl-5,6,7,8-tetrahydrofolate + NAD+ = (6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + NADH + H+.","definition_xrefs":["RHEA:19821"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methylenetetrahydrofolate reductase (NAD(P)H) activity","termid":"GO:0004489"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03712":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"methylenetetrahydrofolate reductase (NADH) activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:RXN-22438","EC:1.5.1.54"],"termid":"GO:0106312","terms_by_termid":{"GO:0106312":null}}


id: PBO:0060985
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NGRN pseudogene 1","termid":"PBO:0060985"}


id: PBO:0029160
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_sensitivity_to_chemical","termid":"PBO:0029160"}


id: PBO:0031740
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_mating_type_switching","termid":"PBO:0031740"}


id: FYPO:0001394
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype observed in the vegetative growth phase of the life cycle in which the activation of monopolar cell growth may occur at either the new or old end of the cell, instead of exclusively at the old end, following cell division. A population of cells with this phenotype has a 1:1 mix of cells initiating growth at the new end and cells initiating growth at the old end.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal activation of monopolar cell growth","termid":"FYPO:0001393"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"activation of monopolar cell growth at either end","synonyms":[{"name":"abnormal initiation of growth from either old or new end following cell division","type":"exact"},{"name":"activation of monopolar vegetative cell growth at either end","type":"exact"}],"termid":"FYPO:0001394"}


id: GO:0140594
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Stops, prevents or reduces the activity of xyloglucan-specific endo-beta-1,4-glucanase.","definition_xrefs":["PMID:28082413"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme inhibitor activity","termid":"GO:0004857"},{"relation_name":"negatively_regulates","term_name":"xyloglucan-specific endo-beta-1,4-glucanase activity","termid":"GO:0033946"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0004857"},{"rel_name":"negatively_regulates","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"negatively_regulates","termid":"GO:0016798"},{"rel_name":"negatively_regulates","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0140678"},{"rel_name":"regulates","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"regulates","termid":"GO:0016787"},{"rel_name":"regulates","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0004857","GO:0030234","GO:0003674","GO:0140678","GO:0016798","GO:0098772","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"xyloglucan-specific endo-beta-1,4-glucanase inhibitor activity","termid":"GO:0140594"}


id: PR:Q8TFI0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- loc1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q8TFI0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C1751.04 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1751.04","synonyms":[{"name":"Spom972h-loc1","type":"exact"}],"termid":"PR:Q8TFI0"}


id: GO:0018511
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: cis-2,3-dihydroxy-2,3-dihydro-p-cumate + NAD+ = 2,3-dihydroxy-p-cumate + H+ + NADH.","definition_xrefs":["EC:1.3.1.58","RHEA:23772"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","termid":"GO:0016628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase activity","secondary_identifiers":["MetaCyc:RXN-665","UM-BBD_reactionID:r0396","KEGG_REACTION:R05240"],"synonyms":[{"name":"cis-2,3-dihydroxy-2,3-dihydro-p-cumate:NAD+ oxidoreductase activity","type":"related"}],"termid":"GO:0018511"}


id: PBO:0086295
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein with a role in regulating Swe1p-dependent polarized growth; involved in maintaining Cdc55p in the cytoplasm where it promotes mitotic entry; involved in mitotic exit through Cdc14p regulation; interacts with silencing proteins at telomeres; has a role in Bcy1p localization; implicated in mRNA nuclear export; ZDS1 has a paralog, ZDS2, that arose from the whole genome duplication","termid":"PBO:0086295"}


id: PBO:0004274
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD40/YVTN repeat-like","termid":"PBO:0004274"}


id: GO:0045660
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of neutrophil differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of granulocyte differentiation","termid":"GO:0030854"},{"relation_name":"is_a","term_name":"regulation of neutrophil differentiation","termid":"GO:0045658"},{"relation_name":"positively_regulates","term_name":"neutrophil differentiation","termid":"GO:0030223"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of neutrophil differentiation","synonyms":[{"name":"activation of neutrophil differentiation","type":"narrow"},{"name":"stimulation of neutrophil differentiation","type":"narrow"},{"name":"up regulation of neutrophil differentiation","type":"exact"},{"name":"up-regulation of neutrophil differentiation","type":"exact"},{"name":"upregulation of neutrophil differentiation","type":"exact"}],"termid":"GO:0045660"}


id: PBO:0069420
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 682, pseudogene","termid":"PBO:0069420"}


id: MONDO:0971172
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with hypotonia, brain anomalies, distinctive facies, and absent language","secondary_identifiers":["MEDGEN:1854654","OMIM:620851","UMLS:C5935628","Orphanet:686488"],"synonyms":[{"name":"NEDHAFA","type":"exact"},{"name":"RENU","type":"exact"},{"name":"RNU4-2-related neurodevelopmental disorder-facial dysmorphism-white matter abnormalities-short stature syndrome","type":"exact"},{"name":"RNU4-2-related neurodevelopmental syndrome","type":"exact"},{"name":"ReNU syndrome","type":"exact"}],"termid":"MONDO:0971172","xrefs":{"Monarch":{"xref_id":"0971172"}}}


id: PBO:0066526
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RANBP2 like and GRIP domain containing 2","termid":"PBO:0066526"}


id: FYPO:0002070
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which a cell has a nucleus in the normal location at the midpoint of the long axis of the cell.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal subcellular component","termid":"FYPO:0001233"},{"relation_name":"output_of","term_name":"normal nucleus positioning","termid":"FYPO:0001389"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000257"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"normal nucleus location","synonyms":[{"name":"normal nuclear location","type":"exact"},{"name":"normal nucleus location during mitotic cell cycle","type":"related"},{"name":"normal nucleus location during vegetative growth","type":"exact"},{"name":"normal nucleus position","type":"exact"},{"name":"normally localized nucleus","type":"exact"}],"termid":"FYPO:0002070"}


id: PBO:0079885
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uroplakin 3B like 2","termid":"PBO:0079885"}


id: MONDO:0016677
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital abnormalities caused by medicinal substances or drugs of abuse given to or taken by the mother, or to which she is inadvertently exposed during the manufacture of such substances. The concept excludes abnormalities resulting from exposure to non-medicinal chemicals in the environment.","definition_xrefs":["MESH:D000014"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental defect during embryogenesis","termid":"MONDO:0019755"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"toxic or drug-related embryofetopathy","secondary_identifiers":["icd11.foundation:293076727","Orphanet:251529","MEDGEN:1843068","UMLS:C5680710"],"termid":"MONDO:0016677","xrefs":{"Monarch":{"xref_id":"0016677"}}}


id: MONDO:0003438
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A morphologic variant of small cell lung carcinoma in combination with a non-small cell carcinoma.","definition_xrefs":["NCIT:C9137"],"direct_ancestors":[{"relation_name":"is_a","term_name":"combined lung carcinoma","termid":"MONDO:0006167"},{"relation_name":"is_a","term_name":"small cell lung carcinoma","termid":"MONDO:0008433"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"combined small cell lung carcinoma","secondary_identifiers":["ONCOTREE:CSCLC","UMLS:C1333125","ICDO:8045/3","DOID:5421","MEDGEN:234167"],"synonyms":[{"name":"CSCLC","type":"related"},{"name":"combined small and large cell lung cancer","type":"exact"},{"name":"combined small and large cell lung carcinoma","type":"exact"},{"name":"combined small cell and large cell lung carcinoma","type":"exact"},{"name":"combined small cell carcinoma of lung","type":"exact"},{"name":"combined small cell carcinoma of the lung","type":"exact"},{"name":"combined small cell lung cancer","type":"exact"},{"name":"combined small cell lung carcinoma","type":"exact"},{"name":"combined type small cell carcinoma of lung","type":"exact"},{"name":"combined type small cell carcinoma of the lung","type":"exact"},{"name":"combined type small cell lung carcinoma","type":"exact"},{"name":"lung combined type small cell carcinoma","type":"related"},{"name":"mixed small cell and large cell carcinoma of lung","type":"exact"},{"name":"mixed small cell and large cell carcinoma of the lung","type":"exact"},{"name":"mixed small cell and large cell lung carcinoma","type":"exact"},{"name":"small cell and large cell carcinoma of lung","type":"exact"},{"name":"small cell and large cell carcinoma of the lung","type":"exact"},{"name":"small cell and large cell lung carcinoma","type":"exact"}],"termid":"MONDO:0003438","xrefs":{"Monarch":{"xref_id":"0003438"}}}


id: PBO:0080499
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vexin","termid":"PBO:0080499"}


id: GO:0006530
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of asparagine, 2-amino-3-carbamoylpropanoic acid.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"asparagine metabolic process","termid":"GO:0006528"},{"relation_name":"is_a","term_name":"glutamine family amino acid catabolic process","termid":"GO:0009065"},{"relation_name":"is_a","term_name":"aspartate family amino acid catabolic process","termid":"GO:0009068"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"asparagine catabolic process","synonyms":[{"name":"asparagine breakdown","type":"exact"},{"name":"asparagine catabolism","type":"exact"},{"name":"asparagine degradation","type":"exact"}],"termid":"GO:0006530"}


id: MONDO:0016433
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Dysmorphism-short stature-deafness-disorder of sex development syndrome is characterized by dysmorphism (including facial asymmetry, arched eyebrows, hypertelorism, broad and flat nasal bridge, microtia, small nose with anteverted nostrils, micrognathia), deafness, cleft palate, male pseudohermaphroditism, and growth and psychomotor retardation. It has been described in two siblings. It is transmitted as an autosomal recessive trait.","definition_xrefs":["Orphanet:2282"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"},{"relation_name":"is_a","term_name":"46,XY disorder of sex development","termid":"MONDO:0020040"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dysmorphism-short stature-deafness-disorder of sex development syndrome","secondary_identifiers":["MEDGEN:1383129","UMLS:C4518561","GARD:18764"],"synonyms":[{"name":"Dysmorphism-short stature-deafness-pseudohermaphroditism syndrome","type":"exact"}],"termid":"MONDO:0016433","xrefs":{"Monarch":{"xref_id":"0016433"}}}


id: MONDO:1011950
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"musculoskeletal system disorder, non-human animal","termid":"MONDO:1011335"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"osteochondroma causing progressive posterior paresis, non-human animal","secondary_identifiers":["OMIA:000749"],"termid":"MONDO:1011950","xrefs":{"Monarch":{"xref_id":"1011950"}}}


id: PATO:0001119
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001119 absolute momentum value (obsolete PATO:0001119)","termid":"PATO:0001119"}


id: PBO:0046501
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ERI1 exoribonuclease family member 2","termid":"PBO:0046501"}


id: GO:0019707
data:
  {"annotated_genes":["SJAG_00895","SJAG_01112","SJAG_04451","SJAG_01299"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[75370,68271,71458,73328],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019706"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of an acyl group to a sulfur atom on the cysteine of a protein molecule.","definition_xrefs":["RHEA:63372","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-acyltransferase activity","termid":"GO:0016417"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00895":null,"SJAG_01112":null,"SJAG_01299":null,"SJAG_04451":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016746","GO:0016740","GO:0140096"],"is_obsolete":false,"name":"protein-cysteine S-acyltransferase activity","references_by_uniquename":{"GO_REF:0000003":null,"GO_REF:0000033":null},"termid":"GO:0019707","terms_by_termid":{"GO:0019706":null}}


id: GO:1902925
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of poly(hydroxyalkanoate) from fatty acid.","definition_xrefs":["PMID:21129764","GOC:mengo_curators","GO_REF:0000092","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid metabolic process","termid":"GO:0006631"},{"relation_name":"is_a","term_name":"poly(hydroxyalkanoate) biosynthetic process","termid":"GO:1901441"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006629"],"is_obsolete":false,"name":"poly(hydroxyalkanoate) biosynthetic process from fatty acid","synonyms":[{"name":"poly(hydroxyalkanoate) anabolism from fatty acid","type":"exact"},{"name":"poly(hydroxyalkanoate) biosynthesis from fatty acid","type":"exact"},{"name":"poly(hydroxyalkanoate) formation from fatty acid","type":"exact"},{"name":"poly(hydroxyalkanoate) synthesis from fatty acid","type":"exact"}],"termid":"GO:1902925"}


id: FYPO:0002160
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing cilofungin.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal growth on echinocandin","termid":"FYPO:0004892"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0002057","FYPO:0000139","FYPO:0002058","FYPO:0002060","FYPO:0000257"],"is_obsolete":false,"name":"normal growth on cilofungin","synonyms":[{"name":"normal cell population growth in presence of cilofungin","type":"exact"},{"name":"normal cell population growth on cilofungin","type":"exact"},{"name":"normal cellular response to cilofungin","type":"related"},{"name":"normal vegetative cell population growth on cilofungin","type":"exact"}],"termid":"FYPO:0002160"}


id: PBO:0017469
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-ends_during","termid":"PBO:0017469"}


id: GO:0034102
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The selective elimination of erythrocytes from the body by autoregulatory mechanisms.","definition_xrefs":["PMID:12905029","GOC:add","PMID:14754397"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tissue remodeling","termid":"GO:0048771"},{"relation_name":"part_of","term_name":"erythrocyte homeostasis","termid":"GO:0034101"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"erythrocyte clearance","synonyms":[{"name":"RBC clearance","type":"exact"},{"name":"neocytolysis","type":"narrow"},{"name":"red blood cell clearance","type":"exact"}],"termid":"GO:0034102"}


id: GO:0006721
data:
  {"annotated_genes":["SJAG_01474","SJAG_00624","SJAG_04568","SJAG_03352","SJAG_00413","SJAG_04499","SJAG_03349","SJAG_03360","SJAG_03715","SJAG_02719","SJAG_00580","SJAG_04865","SJAG_04307"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89039,102195,99919,109789,114051,106843,80300,74691,115207,94782],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010142"},{"annotations":[76617],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045338"},{"annotations":[109790,99920],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033386"},{"annotations":[61985,66880],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016104"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure and including derivatives with various functional groups.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isoprenoid metabolic process","termid":"GO:0006720"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00413":null,"SJAG_00580":null,"SJAG_00624":null,"SJAG_01474":null,"SJAG_02719":null,"SJAG_03349":null,"SJAG_03352":null,"SJAG_03360":null,"SJAG_03715":null,"SJAG_04307":null,"SJAG_04499":null,"SJAG_04568":null,"SJAG_04865":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"terpenoid metabolic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"terpenoid metabolism","type":"exact"}],"termid":"GO:0006721","terms_by_termid":{"GO:0010142":null,"GO:0016104":null,"GO:0033386":null,"GO:0045338":null}}


id: GO:0060407
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the rate, frequency or extent of penile erection. Penile erection is the hardening, enlarging and rising of the penis which often occurs in the sexually aroused male and enables sexual intercourse. Achieved by increased inflow of blood into the vessels of erectile tissue, and decreased outflow.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"is_a","term_name":"regulation of penile erection","termid":"GO:0060405"},{"relation_name":"is_a","term_name":"negative regulation of reproductive process","termid":"GO:2000242"},{"relation_name":"negatively_regulates","term_name":"penile erection","termid":"GO:0043084"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of penile erection","termid":"GO:0060407"}


id: PBO:0076504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"taste 2 receptor member 4","termid":"PBO:0076504"}


id: GO:0045585
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cytotoxic T cell differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of T cell differentiation","termid":"GO:0045582"},{"relation_name":"is_a","term_name":"regulation of cytotoxic T cell differentiation","termid":"GO:0045583"},{"relation_name":"positively_regulates","term_name":"cytotoxic T cell differentiation","termid":"GO:0045065"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0007155"},{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"positive regulation of cytotoxic T cell differentiation","synonyms":[{"name":"activation of cytotoxic T cell differentiation","type":"narrow"},{"name":"positive regulation of cytotoxic T cell development","type":"related"},{"name":"positive regulation of cytotoxic T lymphocyte differentiation","type":"exact"},{"name":"positive regulation of cytotoxic T-cell differentiation","type":"exact"},{"name":"positive regulation of cytotoxic T-lymphocyte differentiation","type":"exact"},{"name":"stimulation of cytotoxic T cell differentiation","type":"narrow"},{"name":"up regulation of cytotoxic T cell differentiation","type":"exact"},{"name":"up-regulation of cytotoxic T cell differentiation","type":"exact"},{"name":"upregulation of cytotoxic T cell differentiation","type":"exact"}],"termid":"GO:0045585"}


id: GO:0000399
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Any of a series of septin structures that are localized in the bud neck of a budding fungal cell during the cell cycle.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"cellular bud neck","termid":"GO:0005935"},{"relation_name":"part_of","term_name":"cell division site","termid":"GO:0032153"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"cellular bud neck septin structure","termid":"GO:0000399"}


id: PBO:0086572
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; conserved among S. cerevisiae strains; YPR064W is not an essential gene","termid":"PBO:0086572"}


id: PBO:0080068
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 33","termid":"PBO:0080068"}


id: PR:Q10485
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pex19 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10485"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C17C9.14 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17C9.14","synonyms":[{"name":"Spom972h-pex19","type":"exact"}],"termid":"PR:Q10485"}


id: PBO:0068669
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 50, pseudogene","termid":"PBO:0068669"}


id: GO:1902778
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alkane stimulus.","definition_xrefs":["GO_REF:0000071","GOC:mengo_curators","PMID:23826995","PMID:22958739","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to chemical","termid":"GO:0042221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to alkane","secondary_identifiers":["GO:1990373"],"synonyms":[{"name":"process resulting in tolerance to alkane","type":"narrow"}],"termid":"GO:1902778"}


id: PATO:0000116
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000116 relative temperature sensitivity (obsolete PATO:0000116)","termid":"PATO:0000116"}


id: PBO:0091075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial single stranded DNA specific 5'-3' exodeoxyribonuclease Exo5","termid":"PBO:0091075"}


id: PBO:0067284
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 366, pseudogene","termid":"PBO:0067284"}


id: PBO:0029684
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_iron_ion_starvation","termid":"PBO:0029684"}


id: MOD:01709
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue amino- or imino-hydrogen with one of the Applied Biosystems iTRAQ4plex reagent reporter+balance groups.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isotope tagged reagent N-acylated residue","termid":"MOD:01706"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iTRAQ4plex reporter+balance reagent N-acylated residue","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"}],"termid":"MOD:01709"}


id: PBO:0056982
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 30b","termid":"PBO:0056982"}


id: GO:0036430
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + CMP = ADP + CDP.","definition_xrefs":["RHEA:11600"],"direct_ancestors":[{"relation_name":"is_a","term_name":"(d)CMP kinase activity","termid":"GO:0004127"},{"relation_name":"is_a","term_name":"nucleoside monophosphate kinase activity","termid":"GO:0050145"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016301","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"CMP kinase activity","secondary_identifiers":["KEGG_REACTION:R00512","MetaCyc:RXN-11832"],"termid":"GO:0036430"}


id: PBO:0081260
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 30","termid":"PBO:0081260"}


id: MONDO:0100211
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"immune system disorder","termid":"MONDO:0005046"},{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"growth hormone insensitivity syndrome with immune dysregulation","termid":"MONDO:0100210"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0005046"],"is_obsolete":false,"name":"growth hormone insensitivity with immune dysregulation 1, autosomal recessive","secondary_identifiers":["MESH:C537871","GARD:18311","SCTID:724179008","NANDO:2200737","OMIM:245590","UMLS:C5435698","Orphanet:220465","DOID:0080836","MEDGEN:1734133"],"synonyms":[{"name":"Laron syndrome due to postreceptor defect","type":"exact"},{"name":"Laron syndrome with immunodeficiency","type":"exact"},{"name":"Laron-like syndrome","type":"exact"},{"name":"growth hormone insensitivity due to postreceptor defect","type":"exact"},{"name":"growth hormone insensitivity with immunodeficiency","type":"related"},{"name":"short stature due to STAT5b deficiency","type":"exact"}],"termid":"MONDO:0100211","xrefs":{"Monarch":{"xref_id":"0100211"}}}


id: PBO:0053639
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 686","termid":"PBO:0053639"}


id: GO:0016875
data:
  {"annotated_genes":["SJAG_01159","SJAG_01235","SJAG_02263","SJAG_00420","SJAG_01197","SJAG_04738","SJAG_03545","SJAG_00243","SJAG_04409","SJAG_01259","SJAG_02428","SJAG_00653","SJAG_03585","SJAG_04473","SJAG_03277","SJAG_03071","SJAG_04856","SJAG_16456","SJAG_00488","SJAG_01352","SJAG_03626","SJAG_00443","SJAG_00103","SJAG_04482","SJAG_04840","SJAG_04285","SJAG_04762","SJAG_02517","SJAG_02977","SJAG_02206","SJAG_04094","SJAG_01522","SJAG_02236","SJAG_01797","SJAG_02615","SJAG_02015"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[76209],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004813"},{"annotations":[69436],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004812"},{"annotations":[76811],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004814"},{"annotations":[105395,102585],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004816"},{"annotations":[76986,77091],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004815"},{"annotations":[72714],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004817"},{"annotations":[73364,70495],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004818"},{"annotations":[80547],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004819"},{"annotations":[73200],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004820"},{"annotations":[78974],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004821"},{"annotations":[75671,71961],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004822"},{"annotations":[76125,78334],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004823"},{"annotations":[72157,73852],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004824"},{"annotations":[78513,69809],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004825"},{"annotations":[79036,77924,79240],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004826"},{"annotations":[77676,70993],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004827"},{"annotations":[77156,73255],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004828"},{"annotations":[73940,71194],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004829"},{"annotations":[70412,71665],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004830"},{"annotations":[79079,71038],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004831"},{"annotations":[70209,70440],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004832"}]},"cv_name":"molecular_function","definition":"Catalysis of the joining of two molecules via a carbon-oxygen bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.","definition_xrefs":["EC:6.1.-.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ligase activity","termid":"GO:0016874"}],"gene_count":36,"genes_by_uniquename":{"SJAG_00103":null,"SJAG_00243":null,"SJAG_00420":null,"SJAG_00443":null,"SJAG_00488":null,"SJAG_00653":null,"SJAG_01159":null,"SJAG_01197":null,"SJAG_01235":null,"SJAG_01259":null,"SJAG_01352":null,"SJAG_01522":null,"SJAG_01797":null,"SJAG_02015":null,"SJAG_02206":null,"SJAG_02236":null,"SJAG_02263":null,"SJAG_02428":null,"SJAG_02517":null,"SJAG_02615":null,"SJAG_02977":null,"SJAG_03071":null,"SJAG_03277":null,"SJAG_03545":null,"SJAG_03585":null,"SJAG_03626":null,"SJAG_04094":null,"SJAG_04285":null,"SJAG_04409":null,"SJAG_04473":null,"SJAG_04482":null,"SJAG_04738":null,"SJAG_04762":null,"SJAG_04840":null,"SJAG_04856":null,"SJAG_16456":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0003824","GO:0016874","GO:0003674"],"is_obsolete":false,"name":"ligase activity, forming carbon-oxygen bonds","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000043":null,"GO_REF:0000107":null},"termid":"GO:0016875","terms_by_termid":{"GO:0004812":null,"GO:0004813":null,"GO:0004814":null,"GO:0004815":null,"GO:0004816":null,"GO:0004817":null,"GO:0004818":null,"GO:0004819":null,"GO:0004820":null,"GO:0004821":null,"GO:0004822":null,"GO:0004823":null,"GO:0004824":null,"GO:0004825":null,"GO:0004826":null,"GO:0004827":null,"GO:0004828":null,"GO:0004829":null,"GO:0004830":null,"GO:0004831":null,"GO:0004832":null}}


id: PBO:0087561
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of Slx5-Slx8 SUMO-targeted ubiquitin ligase (STUbL) complex; role in proteolysis of spindle positioning protein Kar9, DNA repair proteins Rad52p and Rad57p; stimulated by SUMO-modified substrates; contains a C-terminal RING domain; forms nuclear foci upon DNA replication stress; required for maintenance of genome integrity like human ortholog RNF","termid":"PBO:0087561"}


id: GO:2000833
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of steroid hormone secretion.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of lipid transport","termid":"GO:0032370"},{"relation_name":"is_a","term_name":"positive regulation of hormone secretion","termid":"GO:0046887"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"is_a","term_name":"regulation of steroid hormone secretion","termid":"GO:2000831"},{"relation_name":"positively_regulates","term_name":"steroid hormone secretion","termid":"GO:0035929"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of steroid hormone secretion","termid":"GO:2000833"}


id: FYPO:0001905
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the number, structure, and orientation of microtubules in the mitotic spindle are normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal subcellular component during vegetative growth","termid":"FYPO:0001313"},{"relation_name":"part_of","term_name":"normal mitotic spindle","termid":"FYPO:0001399"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal mitotic spindle microtubules","synonyms":[{"name":"normal mitotic spindle microtubules during vegetative growth","type":"exact"},{"name":"normal spindle microtubules during mitotic cell cycle","type":"related"}],"termid":"FYPO:0001905"}


id: GO:0047181
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-hydroxybenzoyl-CoA + 3 malonyl-CoA = 3 CO2 + 2,3',4,6-tetrahydroxybenzophenone + 4 coenzyme A.","definition_xrefs":["EC:2.3.1.151","MetaCyc:2.3.1.151-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016746","GO:0016740"],"is_obsolete":false,"name":"tetrahydroxybenzophenone synthase activity","secondary_identifiers":["RHEA:19305"],"synonyms":[{"name":"malonyl-CoA:3-hydroxybenzoyl-CoA malonyltransferase activity","type":"related"}],"termid":"GO:0047181"}


id: FYPO:0005997
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of any small nuclear RNA (snRNA) primary transcript, snRNA precursor or processing intermediate, or mature snRNA measured in a cell differs from normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered RNA level during vegetative growth","termid":"FYPO:0001326"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0006551","FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"altered snRNA or precursor level","synonyms":[{"name":"abnormal snRNA or precursor level","type":"exact"},{"name":"altered snRNA or precursor accumulation","type":"related"},{"name":"altered snRNA or precursor level during mitotic cell cycle","type":"related"},{"name":"altered snRNA or precursor level during vegetative growth","type":"exact"},{"name":"altered snRNA or precursor transcript level","type":"exact"}],"termid":"FYPO:0005997"}


id: GO:0032750
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of interleukin-26 production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of interleukin-26 production","termid":"GO:0032670"},{"relation_name":"positively_regulates","term_name":"interleukin-26 production","termid":"GO:0032630"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of interleukin-26 production","secondary_identifiers":["GO:0045538"],"synonyms":[{"name":"activation of interleukin-26 production","type":"narrow"},{"name":"positive regulation of IL-26 production","type":"exact"},{"name":"positive regulation of interleukin-26 biosynthetic process","type":"narrow"},{"name":"stimulation of interleukin-26 production","type":"narrow"},{"name":"up regulation of interleukin-26 production","type":"exact"},{"name":"up-regulation of interleukin-26 production","type":"exact"},{"name":"upregulation of interleukin-26 production","type":"exact"}],"termid":"GO:0032750"}


id: PBO:0091993
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane leucine transmembrane transporter Agp3","termid":"PBO:0091993"}


id: PBO:0041213
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C1D nuclear receptor corepressor pseudogene 1","termid":"PBO:0041213"}


id: MONDO:0033630
data:
  {"annotated_genes":["SJAG_00769"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86097],"is_not":false,"summary":null,"term":"MONDO:0033630"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00769":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with speech impairment and dysmorphic facies","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0070417","MEDGEN:1758434","OMIM:619056","UMLS:C5436699","GARD:18530"],"synonyms":[{"name":"NEDSID","type":"exact"}],"termid":"MONDO:0033630","terms_by_termid":{"MONDO:0033630":null},"xrefs":{"Monarch":{"xref_id":"0033630"}}}


id: MOD:01280
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative -","definition_xrefs":["Unimod:118#T","PubMed:11857757","PubMed:12175151"],"direct_ancestors":[{"relation_name":"is_a","term_name":"EDT-iodo-PEO-biotin","termid":"MOD:00490"},{"relation_name":"is_a","term_name":"modified L-threonine residue","termid":"MOD:00917"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EDT-iodo-PEO-biotin - site T","synonyms":[{"name":"EDT-iodo-PEO-biotin","type":"related"},{"name":"EDT-iodoacetyl-PEO-biotin","type":"related"}],"termid":"MOD:01280"}


id: PR:Q7Z9H9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A polyphosphoinositide phosphatase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01912"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polyphosphoinositide phosphatase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1093.03","secondary_identifiers":["UniProtKB:Q7Z9H9"],"synonyms":[{"name":"Spom972h-FIG4","type":"exact"},{"name":"phosphatidylinositol 3,5-bisphosphate 5-phosphatase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q7Z9H9"}


id: GO:0007086
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell cycle process that results in the joining of the lipid bilayer membrane around a vesicle with the lipid bilayer membrane around the nucleus, and contributes to mitotic nuclear envelope reassembly.","definition_xrefs":["GOC:jid","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear membrane fusion","termid":"GO:0000740"},{"relation_name":"is_a","term_name":"vesicle fusion","termid":"GO:0006906"},{"relation_name":"is_a","term_name":"mitotic nuclear membrane organization","termid":"GO:0101024"},{"relation_name":"part_of","term_name":"mitotic nuclear membrane reassembly","termid":"GO:0007084"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0061024"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0061024","GO:0044085","GO:0006810","GO:0007049","GO:0016192","GO:0008150"],"is_obsolete":false,"name":"vesicle fusion with nuclear membrane involved in mitotic nuclear envelope reassembly","termid":"GO:0007086"}


id: PBO:0062212
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily AK member 3 pseudogene","termid":"PBO:0062212"}


id: PBO:0060677
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NDNF antisense RNA 1","termid":"PBO:0060677"}


id: MONDO:0054582
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Townes-Brocks syndrome","termid":"MONDO:0007142"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"Townes-Brocks syndrome 2","secondary_identifiers":["UMLS:C4479534","MEDGEN:1381939","OMIM:617466"],"synonyms":[{"name":"TBS2","type":"related"},{"name":"Townes-Brocks syndrome 2","type":"exact"}],"termid":"MONDO:0054582","xrefs":{"Monarch":{"xref_id":"0054582"}}}


id: PBO:0040276
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"atos homolog B","termid":"PBO:0040276"}


id: MONDO:1011796
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"musculoskeletal system disorder, non-human animal","termid":"MONDO:1011335"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high-frequency tremor, non-human animal","secondary_identifiers":["OMIA:001200"],"termid":"MONDO:1011796","xrefs":{"Monarch":{"xref_id":"1011796"}}}


id: GO:1902138
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of (-)-secoisolariciresinol.","definition_xrefs":["PMID:9872995","PMID:8910615","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lignan biosynthetic process","termid":"GO:0009807"},{"relation_name":"is_a","term_name":"diol biosynthetic process","termid":"GO:0034312"},{"relation_name":"is_a","term_name":"phenol-containing compound biosynthetic process","termid":"GO:0046189"},{"relation_name":"is_a","term_name":"(-)-secoisolariciresinol metabolic process","termid":"GO:1902136"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0019748","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"(-)-secoisolariciresinol biosynthetic process","synonyms":[{"name":"(-)-secoisolariciresinol anabolism","type":"exact"},{"name":"(-)-secoisolariciresinol biosynthesis","type":"exact"},{"name":"(-)-secoisolariciresinol formation","type":"exact"},{"name":"(-)-secoisolariciresinol synthesis","type":"exact"}],"termid":"GO:1902138"}


id: MONDO:0009299
data:
  {"annotated_genes":["SJAG_04148","SJAG_04950","SJAG_03051"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87304],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030736"},{"annotations":[85991],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013689"},{"annotations":[86749],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0054850"}]},"cv_name":"mondo","definition":"46,XX gonadal dysgenesis (46,XX GD) is a primary ovarian defect leading to premature ovarian failure (POF) in otherwise normal 46,XX females as a result of failure of the gonads to develop or due to resistance to gonadotrophin stimulation.","definition_xrefs":["Orphanet:243"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gonadal dysgenesis","termid":"MONDO:0001967"},{"relation_name":"is_a","term_name":"inherited primary ovarian failure","termid":"MONDO:0019852"}],"gene_count":3,"genes_by_uniquename":{"SJAG_03051":null,"SJAG_04148":null,"SJAG_04950":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"46 XX gonadal dysgenesis","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:14450","GARD:5671","icd11.foundation:1742528605","NCIT:C120197","UMLS:C0685837","MEDGEN:146899","NANDO:2200384","SCTID:95198001","MESH:D023961","OMIMPS:233300"],"synonyms":[{"name":"46,XX complete gonadal dysgenesis","type":"exact"},{"name":"46,XX gonadal dysgenesis","type":"exact"},{"name":"46,XX ovarian dysgenesis","type":"exact"},{"name":"46,XX pure gonadal dysgenesis","type":"exact"},{"name":"FSH-RO","type":"exact"},{"name":"XX female gonadal dysgenesis","type":"exact"},{"name":"XX gonadal dysgenesis","type":"related"},{"name":"XX-GD","type":"exact"},{"name":"follicular stimulating hormone-resistant ovaries","type":"exact"},{"name":"hypergonadotropic ovarian dysgenesis","type":"exact"},{"name":"ovarian dysgenesis","type":"related"}],"termid":"MONDO:0009299","terms_by_termid":{"MONDO:0013689":null,"MONDO:0030736":null,"MONDO:0054850":null},"xrefs":{"Monarch":{"xref_id":"0009299"}}}


id: PBO:0081839
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 774","termid":"PBO:0081839"}


id: PBO:0091598
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Caffeine-Induced cell Death","termid":"PBO:0091598"}


id: MOD:00047
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-threonine residue to O-phospho-L-threonine.","definition_xrefs":["PubMed:7678926","OMSSA:7","PubMed:12923550","ChEBI:21967","DeltaMass:0","Unimod:21#T","RESID:AA0038"],"direct_ancestors":[{"relation_name":"is_a","term_name":"residues isobaric at 181.00-181.02 Da","termid":"MOD:00773"},{"relation_name":"is_a","term_name":"modified L-threonine residue","termid":"MOD:00917"},{"relation_name":"is_a","term_name":"O-phosphorylated residue","termid":"MOD:01455"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00696"}],"interesting_parent_ids":["MOD:00696"],"is_obsolete":false,"name":"O-phospho-L-threonine","synonyms":[{"name":"(2S,3R)-2-amino-3-(phosphonooxy)butanoic acid","type":"exact"},{"name":"2-amino-3-hydroxybutanoic acid 3-phosphate","type":"exact"},{"name":"2-azanyl-3-(phosphonooxy)butanoic acid","type":"exact"},{"name":"MOD_RES Phosphothreonine","type":"exact"},{"name":"O-phospho-L-threonine","type":"exact"},{"name":"O-phosphorylated L-threonine","type":"exact"},{"name":"O3-phosphothreonine","type":"exact"},{"name":"OPThr","type":"exact"},{"name":"Phospho","type":"related"},{"name":"Phospho Threonyl","type":"exact"},{"name":"Phosphorylation","type":"related"},{"name":"phosphorylationt","type":"exact"},{"name":"threonine phosphate ester","type":"exact"}],"termid":"MOD:00047"}


id: FYPO:0000923
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of isocitrate dehydrogenase (NAD+) activity is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased catalytic activity","termid":"FYPO:0000662"},{"relation_name":"is_a","term_name":"abnormal isocitrate dehydrogenase (NAD+) activity","termid":"FYPO:0000922"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000652","FYPO:0000707","FYPO:0001985","FYPO:0000661"],"is_obsolete":false,"name":"increased isocitrate dehydrogenase (NAD+) activity","synonyms":[{"name":"increased NAD-IDH activity","type":"exact"}],"termid":"FYPO:0000923"}


id: PBO:0073866
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 9 member B1 pseudogene 2","termid":"PBO:0073866"}


id: MONDO:0013005
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"SeSAME syndrome is characterized by seizures, sensorineural deafness, ataxia, intellectual deficit, and electrolyte imbalance (hypokalemia, metabolic alkalosis, and hypomagnesemia).","definition_xrefs":["Orphanet:199343"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"inherited renal tubular disease","termid":"MONDO:0015962"},{"relation_name":"is_a","term_name":"hereditary ataxia","termid":"MONDO:0100309"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"EAST syndrome","secondary_identifiers":["MEDGEN:411243","SCTID:721207002","OMIM:612780","DOID:0060484","GARD:10514","UMLS:C2748572","MESH:C557674"],"synonyms":[{"name":"EAST syndrome","type":"exact"},{"name":"SESAMES","type":"related"},{"name":"epilepsy, ataxia, sensorineural deafness and tubulopathy","type":"exact"},{"name":"epilepsy, ataxia, sensorineural deafness, and tubulopathy","type":"related"},{"name":"seizures - sensorineural deafness - ataxia - intellectual disability - electrolyte imbalance","type":"related"},{"name":"seizures, sensorineural deafness, ataxia, intellectual disability and electrolyte imbalance","type":"exact"},{"name":"seizures, sensorineural deafness, ataxia, intellectual disability, and electrolyte imbalance","type":"related"},{"name":"seizures, sensorineural deafness, ataxia, mental retardation and electrolyte imbalance","type":"exact"},{"name":"seizures, sensorineural deafness, ataxia, mental retardation, and electrolyte imbalance","type":"related"},{"name":"seizures-sensorineural deafness-ataxia-intellectual disability-electrolyte imbalance syndrome","type":"exact"},{"name":"sesame syndrome","type":"exact"}],"termid":"MONDO:0013005","xrefs":{"Monarch":{"xref_id":"0013005"}}}


id: PBO:0052596
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"karyopherin subunit alpha 4","termid":"PBO:0052596"}


id: PR:O14242
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A pyridoxine kinase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyridoxal kinase C6F6.11c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6F6.11c","secondary_identifiers":["UniProtKB:O14242"],"synonyms":[{"name":"Spom972h-pdxK","type":"exact"}],"termid":"PR:O14242"}


id: PBO:0048511
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"growth differentiation factor 15","termid":"PBO:0048511"}


id: PBO:0059201
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAS related GPR family member X8, pseudogene","termid":"PBO:0059201"}


id: PR:Q9P7B3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sst1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P7B3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cation exchanger C521.04c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC521.04c","synonyms":[{"name":"Spom972h-sst1","type":"exact"}],"termid":"PR:Q9P7B3"}


id: PBO:0085534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S4, no bacterial homolog; RPS4B has a paralog, RPS4A, that arose from the whole genome duplication","termid":"PBO:0085534"}


id: GO:0140740
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-arginyl-[protein] + NAD+ = ADP-riboxanated L-argininyl-[protein] + H+ + NH4(+) + nicotinamide.","definition_xrefs":["RHEA:69500","PMID:34671164"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity, transferring phosphorus-containing groups","termid":"GO:0016772"},{"relation_name":"is_a","term_name":"ammonia-lyase activity","termid":"GO:0016841"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0003674","GO:0016829","GO:0140096"],"is_obsolete":false,"name":"ADP-riboxanase activity","termid":"GO:0140740"}


id: GO:0060552
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of fructose 1,6-bisphosphate metabolism. Fructose 1,6-bisphosphate metabolism is the chemical reactions and pathways involving fructose 1,6-bisphosphate, also known as FBP. The D enantiomer is a metabolic intermediate in glycolysis and gluconeogenesis.","definition_xrefs":["GOC:BHF","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of phosphate metabolic process","termid":"GO:0045937"},{"relation_name":"is_a","term_name":"regulation of fructose 1,6-bisphosphate metabolic process","termid":"GO:0060551"},{"relation_name":"positively_regulates","term_name":"fructose 1,6-bisphosphate metabolic process","termid":"GO:0030388"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of fructose 1,6-bisphosphate metabolic process","termid":"GO:0060552"}


id: PBO:0052319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KIAA1191","termid":"PBO:0052319"}


id: PBO:0034697
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene characterisation status","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces_specific_protein,_uncharacterized","termid":"PBO:0034697"}


id: PBO:0062663
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 13 subfamily E member 1 pseudogene","termid":"PBO:0062663"}


id: MONDO:0001381
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A lymphoma that involves the urinary bladder.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"urinary bladder cancer","termid":"MONDO:0001187"},{"relation_name":"is_a","term_name":"lymphoma","termid":"MONDO:0005062"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0005570"],"is_obsolete":false,"name":"bladder lymphoma","secondary_identifiers":["MEDGEN:231948","UMLS:C1332561","DOID:11821","NCIT:C6164"],"synonyms":[{"name":"lymphoma of bladder","type":"exact"},{"name":"lymphoma of the bladder","type":"exact"},{"name":"lymphoma of the urinary bladder","type":"exact"},{"name":"lymphoma of urinary bladder","type":"exact"},{"name":"primary bladder lymphoma","type":"exact"},{"name":"urinary bladder lymphoma","type":"exact"}],"termid":"MONDO:0001381","xrefs":{"Monarch":{"xref_id":"0001381"}}}


id: GO:0080012
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: trihydroxyferuloyl spermidine + S-adenosyl-L-methionine = dihydroxyferuloyl-sinapoyl spermidine + S-adenosyl-L-homocysteine + H+.","definition_xrefs":["PMID:18557837"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-methyltransferase activity","termid":"GO:0008171"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016741"],"is_obsolete":false,"name":"trihydroxyferuloyl spermidine O-methyltransferase activity","secondary_identifiers":["MetaCyc:RXN-11263"],"synonyms":[{"name":"N1,N5,N10-tris-(5-hydroxyferuloyl)spermidine O-methyltransferase activity","type":"exact"}],"termid":"GO:0080012"}


id: GO:0018340
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of peptidyl-serine to peptidyl-O-(sn-1-glycerophosphoryl)-L-serine.","definition_xrefs":["RESID:AA0264"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-O-(sn-1-glycerophosphoryl)-L-serine biosynthetic process from peptidyl-serine (obsolete GO:0018340)","synonyms":[{"name":"peptidyl-O-(sn-1-glycerophosphoryl)-L-serine anabolism from peptidyl-serine","type":"exact"},{"name":"peptidyl-O-(sn-1-glycerophosphoryl)-L-serine formation from peptidyl-serine","type":"exact"},{"name":"peptidyl-O-(sn-1-glycerophosphoryl)-L-serine synthesis from peptidyl-serine","type":"exact"}],"termid":"GO:0018340"}


id: GO:0048321
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of an axial mesoderm cell.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesodermal cell differentiation","termid":"GO:0048333"},{"relation_name":"part_of","term_name":"axial mesoderm formation","termid":"GO:0048320"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"axial mesodermal cell differentiation","synonyms":[{"name":"axial mesoderm cell differentiation","type":"exact"}],"termid":"GO:0048321"}


id: GO:0140993
data:
  {"annotated_genes":["SJAG_02873","SJAG_00341","SJAG_00943","SJAG_03720","SJAG_03537","SJAG_02773","SJAG_03900","SJAG_03997","SJAG_01837","SJAG_01204","SJAG_03630","SJAG_03664","SJAG_00596","SJAG_02756","SJAG_01082","SJAG_04574","SJAG_03548","SJAG_02659","SJAG_03041","SJAG_00364","SJAG_02401","SJAG_00769","SJAG_00678","SJAG_02350","SJAG_01193","SJAG_03635","SJAG_03487","SJAG_03006","SJAG_02319","SJAG_02165","SJAG_01146","SJAG_02990","SJAG_03286","SJAG_00676"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[65636],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004402"},{"annotations":[75906],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008469"},{"annotations":[74437],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043998"},{"annotations":[116539,106939],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140995"},{"annotations":[73679,110509],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990259"},{"annotations":[114806],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0072371"},{"annotations":[119147,116513],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140850"},{"annotations":[91754,91098],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036408"},{"annotations":[94690],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140851"},{"annotations":[91755],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043993"},{"annotations":[70771,87734],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051864"},{"annotations":[95817],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140954"},{"annotations":[78949],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046975"},{"annotations":[64454],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140955"},{"annotations":[67190],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140680"},{"annotations":[58191],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0062122"},{"annotations":[99290],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044016"},{"annotations":[78948],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042800"},{"annotations":[58703],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140999"},{"annotations":[70544,75276],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034647"},{"annotations":[72934],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032931"},{"annotations":[91756],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043992"},{"annotations":[118060,70766],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032454"},{"annotations":[110802],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140948"},{"annotations":[63072],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140949"},{"annotations":[94424,103545],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140683"},{"annotations":[110804],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140947"},{"annotations":[116985],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035175"},{"annotations":[78600],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0072354"},{"annotations":[99291,74440],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010485"},{"annotations":[88770],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043997"},{"annotations":[117319],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140943"},{"annotations":[88771],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043995"},{"annotations":[88772],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043996"},{"annotations":[76763,71358,76826,113829],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042054"}]},"cv_name":"molecular_function","definition":"A catalytic activity that acts on a histone protein. Reversible histone modifications contribute to regulation of gene expression.","definition_xrefs":["GOC:pg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":34,"genes_by_uniquename":{"SJAG_00341":null,"SJAG_00364":null,"SJAG_00596":null,"SJAG_00676":null,"SJAG_00678":null,"SJAG_00769":null,"SJAG_00943":null,"SJAG_01082":null,"SJAG_01146":null,"SJAG_01193":null,"SJAG_01204":null,"SJAG_01837":null,"SJAG_02165":null,"SJAG_02319":null,"SJAG_02350":null,"SJAG_02401":null,"SJAG_02659":null,"SJAG_02756":null,"SJAG_02773":null,"SJAG_02873":null,"SJAG_02990":null,"SJAG_03006":null,"SJAG_03041":null,"SJAG_03286":null,"SJAG_03487":null,"SJAG_03537":null,"SJAG_03548":null,"SJAG_03630":null,"SJAG_03635":null,"SJAG_03664":null,"SJAG_03720":null,"SJAG_03900":null,"SJAG_03997":null,"SJAG_04574":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0140096","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"histone modifying activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000003":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0140993","terms_by_termid":{"GO:0004402":null,"GO:0008469":null,"GO:0010485":null,"GO:0032454":null,"GO:0032931":null,"GO:0034647":null,"GO:0035175":null,"GO:0036408":null,"GO:0042054":null,"GO:0042800":null,"GO:0043992":null,"GO:0043993":null,"GO:0043995":null,"GO:0043996":null,"GO:0043997":null,"GO:0043998":null,"GO:0044016":null,"GO:0046975":null,"GO:0051864":null,"GO:0062122":null,"GO:0072354":null,"GO:0072371":null,"GO:0140680":null,"GO:0140683":null,"GO:0140850":null,"GO:0140851":null,"GO:0140943":null,"GO:0140947":null,"GO:0140948":null,"GO:0140949":null,"GO:0140954":null,"GO:0140955":null,"GO:0140995":null,"GO:0140999":null,"GO:1990259":null}}


id: FYPO:0006104
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of retrotransposon integration is decreased.","definition_xrefs":["PMID:26358720","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal transposition","termid":"FYPO:0000591"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased retrotransposon integration","synonyms":[{"name":"decreased retrotransposon integration during mitotic cell cycle","type":"related"},{"name":"decreased retrotransposon integration during vegetative growth","type":"exact"},{"name":"decreased transposon integration involved in RNA-mediated transposition","type":"exact"},{"name":"reduced retrotransposon integration","type":"exact"}],"termid":"FYPO:0006104"}


id: PR:O94403
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC126.11c gene.","definition_xrefs":["UniProtKB:O94403","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized RNA-binding protein C126.11c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC126.11c","synonyms":[{"name":"Spom972h-SPCC126.11c","type":"exact"}],"termid":"PR:O94403"}


id: GO:0075314
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of basidium development, a process that leads to the formation of a basidium, a small, specialized club-shaped structure typically bearing four basidiospores at the tips of minute projections. The basidium is unique to Basidiomycetes and distinguishes them from other kinds of fungi.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of spore-bearing organ development","termid":"GO:0075260"},{"relation_name":"regulates","term_name":"basidium development","termid":"GO:0075313"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of basidium development","termid":"GO:0075314"}


id: PBO:0080022
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 17 like family member 8","termid":"PBO:0080022"}


id: PBO:0002304
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"P-TEFb-associated cyclin-dependent protein kinase Lsk1","termid":"PBO:0002304"}


id: FYPO:0003770
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A transcription regulation phenotype in which pheromone-responsive positive regulation of transcription from an RNA polymerase II promoter is decreased.","definition_xrefs":["GO:0007329","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal positive regulation of transcription","termid":"FYPO:0000623"},{"relation_name":"is_a","term_name":"abnormal transcriptional response to pheromone","termid":"FYPO:0000984"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000298","FYPO:0000002","FYPO:0006551","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"decreased transcriptional response to pheromone","synonyms":[{"name":"decreased positive regulation of transcription from RNA polymerase II promoter by pheromones","type":"exact"},{"name":"reduced positive regulation of transcription from RNA polymerase II promoter by pheromones","type":"exact"}],"termid":"FYPO:0003770"}


id: MONDO:0021633
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An astrocytoma that arises from the cerebral hemispheres.","definition_xrefs":["NCIT:C4951"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neoplasm of cerebral hemisphere","termid":"MONDO:0021374"},{"relation_name":"is_a","term_name":"brain astrocytoma","termid":"MONDO:0021631"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cerebral astrocytoma","secondary_identifiers":["UMLS:C0750935","MEDGEN:196691","SCTID:99131000119108"],"synonyms":[{"name":"astrocytoma (excluding glioblastoma) of cerebral hemisphere","type":"exact"},{"name":"astrocytoma of cerebral hemispheres","type":"exact"},{"name":"astrocytoma of cerebrum","type":"exact"},{"name":"astrocytoma of the cerebral hemispheres","type":"exact"},{"name":"astrocytoma of the cerebrum","type":"exact"},{"name":"cerebral astrocytoma","type":"exact"},{"name":"cerebral hemisphere astrocytoma (excluding glioblastoma)","type":"exact"},{"name":"cerebral hemispheric astrocytoma","type":"exact"}],"termid":"MONDO:0021633","xrefs":{"Monarch":{"xref_id":"0021633"}}}


id: PBO:0069839
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1125, pseudogene","termid":"PBO:0069839"}


id: MONDO:0850332
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An anaplastic astrocytoma carrying IDH mutations.","definition_xrefs":["DOID:0080875"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anaplastic astrocytoma","termid":"MONDO:0016684"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"IDH-mutant anaplastic astrocytoma","termid":"MONDO:0850332","xrefs":{"Monarch":{"xref_id":"0850332"}}}


id: GO:0097611
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A cell surface furrow that wraps around a dinoflagellate cell; the transverse flagellum lies in it.","definition_xrefs":["PMID:7002229","GOC:at","Wikipedia:Dinoflagellate#Morphology"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell surface furrow","termid":"GO:0097610"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0009986"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0009986"],"is_obsolete":false,"name":"dinoflagellate cingulum","synonyms":[{"name":"cingulum","type":"broad"},{"name":"girdle","type":"related"},{"name":"transverse groove","type":"related"}],"termid":"GO:0097611"}


id: PATO:0001105
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001105 absolute strain value (obsolete PATO:0001105)","termid":"PATO:0001105"}


id: SO:0002121
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The configuration of the IG and TR variable (V), diversity (D) and joining (J) germline genes before DNA rearrangements (with or without constant (C) genes in undefined configuration. (germline, non rearranged regions of the IG DNA loci).","definition_xrefs":["IGMT:http://www.imgt.org/IMGTScientificChart/SequenceDescription/Keywords.php","GENCODE:http://www.gencodegenes.org/gencode_biotypes.html"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gene","termid":"SO:0000704"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vertebrate_immune_system_gene","synonyms":[{"name":"immune_gene","type":"exact"}],"termid":"SO:0002121"}


id: PBO:0070575
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 41","termid":"PBO:0070575"}


id: PBO:0065633
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PTPN11 pseudogene 2","termid":"PBO:0065633"}


id: MONDO:0016105
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An instance of skeletal muscle disease that is acquired during the lifetime of the individual.","definition_xrefs":["MONDO:patterns/acquired"],"direct_ancestors":[{"relation_name":"is_a","term_name":"skeletal muscle disorder","termid":"MONDO:0020120"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acquired skeletal muscle disease","secondary_identifiers":["MEDGEN:1842576","Orphanet:206638","UMLS:C5680799"],"synonyms":[{"name":"acquired skeletal muscle disease","type":"exact"}],"termid":"MONDO:0016105","xrefs":{"Monarch":{"xref_id":"0016105"}}}


id: MONDO:0013582
data:
  {"annotated_genes":["SJAG_02795"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86281],"is_not":false,"summary":null,"term":"MONDO:0013582"}]},"cv_name":"mondo","definition":"Any mosaic variegated aneuploidy syndrome in which the cause of the disease is a mutation in the CEP57 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mosaic variegated aneuploidy syndrome","termid":"MONDO:0000141"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02795":null},"genotype_count":0,"is_obsolete":false,"name":"mosaic variegated aneuploidy syndrome 2","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:614114","DOID:0080142","GARD:15758","UMLS:C3279843","MEDGEN:481473","NCIT:C168989"],"synonyms":[{"name":"CEP57 mosaic variegated aneuploidy syndrome","type":"exact"},{"name":"MOSAIC variegated aneuploidy syndrome 2","type":"related"},{"name":"MVA2","type":"related"},{"name":"Mosaic variegated aneuploidy syndrome type 2","type":"exact"},{"name":"mosaic variegated aneuploidy syndrome 2","type":"exact"},{"name":"mosaic variegated aneuploidy syndrome caused by mutation in CEP57","type":"exact"},{"name":"mosaic variegated aneuploidy syndrome type 2","type":"exact"}],"termid":"MONDO:0013582","terms_by_termid":{"MONDO:0013582":null},"xrefs":{"Monarch":{"xref_id":"0013582"}}}


id: MONDO:0021581
data:
  {"annotated_genes":["SJAG_03429","SJAG_01013","SJAG_03881","SJAG_03905","SJAG_01151","SJAG_01349","SJAG_03453","SJAG_02855","SJAG_00031","SJAG_05979","SJAG_04287","SJAG_01748"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87711,87712,87558,87557,87556,87559],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0018874"},{"annotations":[86517],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0002629"},{"annotations":[85685],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010621"},{"annotations":[87082],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009050"},{"annotations":[87141],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007205"},{"annotations":[86020],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007767"},{"annotations":[86021],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007768"},{"annotations":[87037],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007908"}]},"cv_name":"mondo","definition":"Neoplasms composed of connective tissue, including elastic, mucous, reticular, osseous, and cartilaginous tissue. The concept does not refer to neoplasms located in connective tissue.","definition_xrefs":["MESH:D009372"],"direct_ancestors":[{"relation_name":"is_a","term_name":"connective tissue disorder","termid":"MONDO:0003900"},{"relation_name":"is_a","term_name":"neoplasm","termid":"MONDO:0005070"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00031":null,"SJAG_01013":null,"SJAG_01151":null,"SJAG_01349":null,"SJAG_01748":null,"SJAG_02855":null,"SJAG_03429":null,"SJAG_03453":null,"SJAG_03881":null,"SJAG_03905":null,"SJAG_04287":null,"SJAG_05979":null},"genotype_count":0,"is_obsolete":false,"name":"connective tissue neoplasm","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["ICD9:239.2","UMLS:C0027656","MEDGEN:45035","SCTID:126598008"],"synonyms":[{"name":"connective tissue neoplasm","type":"exact"},{"name":"connective tissue neoplasm (disease)","type":"exact"},{"name":"connective tissue neoplasms","type":"related"},{"name":"connective tissue tumor","type":"exact"},{"name":"connective tissue tumour","type":"exact"},{"name":"neoplasm of connective tissue","type":"exact"},{"name":"neoplasm of connective tissues","type":"exact"},{"name":"neoplasm, connective tissue","type":"related"},{"name":"tumor of connective tissue","type":"exact"},{"name":"tumour of connective tissue","type":"exact"}],"termid":"MONDO:0021581","terms_by_termid":{"MONDO:0002629":null,"MONDO:0007205":null,"MONDO:0007767":null,"MONDO:0007768":null,"MONDO:0007908":null,"MONDO:0009050":null,"MONDO:0010621":null,"MONDO:0018874":null},"xrefs":{"Monarch":{"xref_id":"0021581"}}}


id: GO:0007029
data:
  {"annotated_genes":["SJAG_01782","SJAG_02208","SJAG_01178","SJAG_01116","SJAG_00603","SJAG_01999","SJAG_02330","SJAG_01223","SJAG_01127","SJAG_02437","SJAG_03812","SJAG_01437","SJAG_02914","SJAG_04338","SJAG_04413","SJAG_01940","SJAG_04221","SJAG_03930","SJAG_03558","SJAG_01564","SJAG_04684","SJAG_02683","SJAG_02763","SJAG_05289","SJAG_00064","SJAG_02595","SJAG_02626","SJAG_05414","SJAG_03315","SJAG_01168","SJAG_01848","SJAG_00959","SJAG_01240","SJAG_03170","SJAG_01460","SJAG_03247","SJAG_03865","SJAG_00277","SJAG_04294","SJAG_00053","SJAG_04417","SJAG_02065","SJAG_03795"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[75161,101882],"is_not":false,"summary":null,"term":"GO:0007029"},{"annotations":[78770],"is_not":false,"rel_names":["is_a","part_of"],"summary":null,"term":"GO:0016320"},{"annotations":[94015,74632,72234,73911,90749,119527],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0090158"},{"annotations":[64751],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071788"},{"annotations":[108872,108952,115272,118889,103771],"is_not":false,"rel_names":["is_a","part_of"],"summary":null,"term":"GO:1990809"},{"annotations":[91823,72235,62331,118462,60565,61472,111972,97784,90750],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0061817"},{"annotations":[90751,104691],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0051685"},{"annotations":[64749],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1903373"},{"annotations":[108710,108621,68254,114142,104796,95169,112560,98688,103826,114695,98917,92007,98374,105102,106489,110710,71777,109644,101510],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0045048"},{"annotations":[114434,73194,75401],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071816"},{"annotations":[115507,107343],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1990854"}]},"cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the endoplasmic reticulum.","definition_xrefs":["GOC:mah","GOC:jl","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle organization","termid":"GO:0006996"},{"relation_name":"part_of","term_name":"endomembrane system organization","termid":"GO:0010256"}],"gene_count":43,"genes_by_uniquename":{"SJAG_00053":null,"SJAG_00064":null,"SJAG_00277":null,"SJAG_00603":null,"SJAG_00959":null,"SJAG_01116":null,"SJAG_01127":null,"SJAG_01168":null,"SJAG_01178":null,"SJAG_01223":null,"SJAG_01240":null,"SJAG_01437":null,"SJAG_01460":null,"SJAG_01564":null,"SJAG_01782":null,"SJAG_01848":null,"SJAG_01940":null,"SJAG_01999":null,"SJAG_02065":null,"SJAG_02208":null,"SJAG_02330":null,"SJAG_02437":null,"SJAG_02595":null,"SJAG_02626":null,"SJAG_02683":null,"SJAG_02763":null,"SJAG_02914":null,"SJAG_03170":null,"SJAG_03247":null,"SJAG_03315":null,"SJAG_03558":null,"SJAG_03795":null,"SJAG_03812":null,"SJAG_03865":null,"SJAG_03930":null,"SJAG_04221":null,"SJAG_04294":null,"SJAG_04338":null,"SJAG_04413":null,"SJAG_04417":null,"SJAG_04684":null,"SJAG_05289":null,"SJAG_05414":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endoplasmic reticulum organization","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null,"PMID:26774782":null},"synonyms":[{"name":"ER organisation","type":"exact"},{"name":"ER organization and biogenesis","type":"related"},{"name":"endoplasmic reticulum morphology","type":"related"},{"name":"endoplasmic reticulum organisation","type":"exact"},{"name":"endoplasmic reticulum organization and biogenesis","type":"related"}],"termid":"GO:0007029","terms_by_termid":{"GO:0007029":null,"GO:0016320":null,"GO:0045048":null,"GO:0051685":null,"GO:0061817":null,"GO:0071788":null,"GO:0071816":null,"GO:0090158":null,"GO:1903373":null,"GO:1990809":null,"GO:1990854":null}}


id: PBO:0002361
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine palmitoyl transferase A subunit (predicted)","termid":"PBO:0002361"}


id: GO:1900857
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of fumitremorgin B biosynthetic process.","definition_xrefs":["GOC:TermGenie","GOC:di"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of fumitremorgin B biosynthetic process (obsolete GO:1900857)","synonyms":[{"name":"up regulation of fumitremorgin B biosynthetic process","type":"exact"},{"name":"up-regulation of fumitremorgin B biosynthetic process","type":"exact"},{"name":"upregulation of fumitremorgin B biosynthetic process","type":"exact"}],"termid":"GO:1900857"}


id: PBO:0076541
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription activation suppressor","termid":"PBO:0076541"}


id: GO:0050142
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 6 reduced flavodoxin + 6 H+ + N2 + n ATP = 6 oxidized flavodoxin + 2 NH3 + n ADP + n phosphate.","definition_xrefs":["MetaCyc:NITROGENASE-FLAVODOXIN-RXN","EC:1.19.6.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on reduced flavodoxin as donor, dinitrogen as acceptor","termid":"GO:0016738"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"nitrogenase (flavodoxin) activity","secondary_identifiers":["RHEA:15645"],"synonyms":[{"name":"reduced flavodoxin:dinitrogen oxidoreductase (ATP-hydrolysing)","type":"related"}],"termid":"GO:0050142"}


id: RO:0002553
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"x is a hyperparasite of y iff x is a parasite of a parasite of the target organism y","direct_ancestors":[{"relation_name":"is_a","term_name":"has_host","termid":"RO:0002454"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyperparasite_of","synonyms":[{"name":"epiparasite of","type":"related"},{"name":"hyperparasitoid of","type":"related"}],"termid":"RO:0002553"}


id: PBO:0053906
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1198","termid":"PBO:0053906"}


id: PBO:0013081
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"does not functionally complement E. coli hisG","termid":"PBO:0013081"}


id: MONDO:0016524
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. An alteration in limb growth caused by congenital vascular malformations in childhood.","definition_xrefs":["PMID:8305978"],"gene_count":0,"genotype_count":0,"name":"obsolete congenital vascular bone syndrome (obsolete MONDO:0016524)","secondary_identifiers":["icd11.foundation:825559961","Orphanet:235832"],"termid":"MONDO:0016524","xrefs":{"Monarch":{"xref_id":"0016524"}}}


id: PBO:0111064
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spliceosome complex disassembly protein Ntr2, human GCFC2 ortholog","termid":"PBO:0111064"}


id: PR:Q9P781
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC1711.09c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P781"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi apparatus membrane protein tvp38 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1711.09c","synonyms":[{"name":"Spom972h-SPBC1711.09c","type":"exact"}],"termid":"PR:Q9P781"}


id: GO:0051327
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cell cycle phase during which nuclear division occurs, and which is comprises the phases: prophase, metaphase, anaphase and telophase and occurs as part of a meiotic cell cycle.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"M phase","termid":"GO:0000279"},{"relation_name":"is_a","term_name":"meiotic cell cycle phase","termid":"GO:0098762"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"meiotic M phase","synonyms":[{"name":"M phase of meiotic cell cycle","type":"exact"}],"termid":"GO:0051327"}


id: PR:P15398
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DNA-directed RNA polymerase I subunit RPA1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03577"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-directed RNA polymerase I subunit rpa1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC4C3.05c","secondary_identifiers":["UniProtKB:P15398"],"synonyms":[{"name":"DNA-directed RNA polymerase I 190 kDa polypeptide (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"DNA-directed RNA polymerase I largest subunit (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-POLR1A","type":"exact"}],"termid":"PR:P15398"}


id: MONDO:0005313
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Necrotizing enterocolitis (NEC) is a devastating disease that affects mostly the intestine of premature infants. The wall of the intestine is invaded by bacteria, which cause local infection and inflammation that can ultimately destroy the wall of the bowel (intestine). Such bowel wall destruction can lead to perforation of the intestine and spillage of stool into the infant's abdomen, which can result in an overwhelming infection and death.","direct_ancestors":[{"relation_name":"is_a","term_name":"intestinal disorder","termid":"MONDO:0005020"},{"relation_name":"is_a","term_name":"enterocolitis","termid":"MONDO:0009172"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"necrotizing enterocolitis","secondary_identifiers":["NCIT:C84915","UMLS:C0520459","SCTID:2707005","GARD:9767","MESH:D020345","EFO:0003928","MEDGEN:105440","ICD9:777.5","Orphanet:391673","icd11.foundation:141267925"],"synonyms":[{"name":"NEC","type":"exact"},{"name":"necrotizing enterocolitis","type":"exact"},{"name":"necrotizing enterocolitis in fetus or newborn","type":"narrow"},{"name":"necrotizing enterocolitis in foetus or newborn","type":"narrow"}],"termid":"MONDO:0005313","xrefs":{"Monarch":{"xref_id":"0005313"}}}


id: MONDO:0003323
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete MONDO:0003323 (obsolete MONDO:0003323)","termid":"MONDO:0003323","xrefs":{"Monarch":{"xref_id":"0003323"}}}


id: PBO:0029406
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_NADPH-hemoprotein_reductase_activity","termid":"PBO:0029406"}


id: PBO:0070548
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 14","termid":"PBO:0070548"}


id: FYECO:0000086
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which ornithine was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ ornithine","termid":"FYECO:0000086"}


id: FYPO:0000409
data:
  {"alleles_by_uniquename":{"SJAG_01956:allele-1":{"allele_type":"amino_acid_mutation","description":"E405K ts","gene_uniquename":"SJAG_01956","name":"nuc2-1051","uniquename":"SJAG_01956:allele-1"},"SJAG_03351:allele-1":{"allele_type":"amino_acid_mutation","description":"A186T ts","gene_uniquename":"SJAG_03351","name":"cut23-415","uniquename":"SJAG_03351:allele-1"},"SJAG_03575:allele-1":{"allele_type":"amino_acid_mutation","description":"E548K ts","gene_uniquename":"SJAG_03575","name":"apc2-361","uniquename":"SJAG_03575:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[119671,119672,119673],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000324"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which one or more cell cycle phase transitions begins later than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular process during vegetative growth","termid":"FYPO:0001362"},{"relation_name":"is_a","term_name":"abnormal cell cycle phase transition","termid":"FYPO:0005273"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01956":null,"SJAG_03351":null,"SJAG_03575":null},"genotype_count":3,"genotypes_by_uniquename":{"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"apc2-361(E548K ts)","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]}]},"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cut23-415(A186T ts)","display_uniquename":"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03351:allele-1","expression":"Not assayed or wild type"}]}]},"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"nuc2-1051(E405K ts)","display_uniquename":"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01956:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000631","FYPO:0000002","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"delayed cell cycle phase transition","references_by_uniquename":{"PMID:23786411":null},"single_locus_annotated_genes":["SJAG_01956","SJAG_03351","SJAG_03575"],"single_locus_genotype_uniquenames":["cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"cell cycle progression: delayed","type":"related"},{"name":"delayed cell cycle phase transition during mitotic cell cycle","type":"related"},{"name":"delayed cell cycle phase transition during vegetative growth","type":"exact"}],"termid":"FYPO:0000409","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000137":null,"FYPO:0000324":null}}


id: GO:0110103
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A conserved protein complex capable of 5'-3' exoribonuclease activity. It is able to promote RNA polymerase II (RNAPII) transcription termination by degrading pre-mRNA from the newly formed 5' phosphorylated end.","definition_xrefs":["GOC:lnp","PMID:23200120","PMID:25722373"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"},{"relation_name":"is_a","term_name":"exoribonuclease complex","termid":"GO:1905354"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005634"],"is_obsolete":false,"name":"RNA polymerase II termination complex","synonyms":[{"name":"TXT complex","type":"exact"}],"termid":"GO:0110103"}


id: GO:0061027
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the development of the umbilical cord, from its formation to the mature structure. The umbilical cord is an organ or embryonic origin consisting of the 2 umbilical arteries and the one umbilical vein. The umbilical cord connects the cardiovascular system of the fetus to the mother via the placenta.","definition_xrefs":["GOC:BHF","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"umbilical cord development","termid":"GO:0061027"}


id: GO:0090686
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transmembrane transfer of a monoatomic cation by a channel that opens when glycine betaine has been bound by the channel complex or one of its constituent parts.","definition_xrefs":["PMID:24212673","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ligand-gated monoatomic cation channel activity","termid":"GO:0099094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"glycine betaine-activated nonselective monoatomic cation channel activity","synonyms":[{"name":"glycine betaine-activated nonselective monovalent cation channel activity","type":"related"}],"termid":"GO:0090686"}


id: PBO:0002947
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA U24","termid":"PBO:0002947"}


id: GO:0070619
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that contains Grb2, the adaptor protein Shc and the guanine nucleotide exchange factor Sos (or an ortholog thereof, such as mSos1), and is involved in linking EGFR activation to the p21-Ras pathway.","definition_xrefs":["PMID:8940013","PMID:7970708","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005886"],"is_obsolete":false,"name":"Shc-Grb2-Sos complex","synonyms":[{"name":"Shc-Grb2-mSos1 complex, EGF stimulated","type":"narrow"}],"termid":"GO:0070619"}


id: PBO:0034702
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane bound O-acyltransferase, MBOAT Gup1 (predicted)","termid":"PBO:0034702"}


id: PBO:0040614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BAI1 associated protein 3","termid":"PBO:0040614"}


id: PBO:0044678
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA damage inducible 1 homolog 2","termid":"PBO:0044678"}


id: FYPO:0002361
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone H3 acetylation is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone acetylation during vegetative growth","termid":"FYPO:0000456"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0002274","FYPO:0001320","FYPO:0002494","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal histone H3 acetylation during vegetative growth","synonyms":[{"name":"abnormal histone H3 acetylation during mitotic cell cycle","type":"related"}],"termid":"FYPO:0002361"}


id: MONDO:0001310
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"corneal disorder","termid":"MONDO:0000942"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"Bowman's membrane folds or rupture","secondary_identifiers":["DOID:11552","ICD9:371.31","MEDGEN:509796","SCTID:45382000","UMLS:C0155115"],"synonyms":[{"name":"Bowman membrane folds or rupture","type":"exact"},{"name":"folds and/or rupture of bowman's membrane","type":"exact"}],"termid":"MONDO:0001310","xrefs":{"Monarch":{"xref_id":"0001310"}}}


id: GO:0006041
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving glucosamine (2-amino-2-deoxyglucopyranose), an aminodeoxysugar that occurs in combined form in chitin.","definition_xrefs":["GOC:jl","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucosamine-containing compound metabolic process","termid":"GO:1901071"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"glucosamine metabolic process","synonyms":[{"name":"chitosamine metabolic process","type":"exact"},{"name":"chitosamine metabolism","type":"exact"},{"name":"glucosamine metabolism","type":"exact"}],"termid":"GO:0006041"}


id: PBO:0031782
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-delayed_onset_of_cytokinesis","termid":"PBO:0031782"}


id: PR:O42922
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC16A3.17c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O42922"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized MFS-type transporter C16A3.17c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16A3.17c","synonyms":[{"name":"Spom972h-SPBC16A3.17c","type":"exact"}],"termid":"PR:O42922"}


id: PBO:0049407
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"guanylyl cyclase domain containing 1","termid":"PBO:0049407"}


id: GO:0102409
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: behenoyl-CoA + sn-glycerol 3-phosphate(2-) = coenzyme A + 2-docosanoyl-glycerol 3-phosphate.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete sn-2-glycerol-3-phosphate C16:0-CoA acyl transferase activity (obsolete GO:0102409)","termid":"GO:0102409"}


id: PBO:0063902
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol glycan anchor biosynthesis class Y","termid":"PBO:0063902"}


id: MONDO:0008361
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"radius, aplasia of, with cleft lip/palate","secondary_identifiers":["UMLS:C1867395","MEDGEN:357270","OMIM:179400"],"synonyms":[{"name":"radius, aplasia of, with cleft lip/palate","type":"exact"}],"termid":"MONDO:0008361","xrefs":{"Monarch":{"xref_id":"0008361"}}}


id: FYPO:0005545
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nuclear chromatin organization is abnormal, such that regions containing transposons (Tf2 elements) are physically clustered to a lower extent than normal.","definition_xrefs":["PomBase:mah","PMID:27343236"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromatin organization during vegetative growth","termid":"FYPO:0001352"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000641","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased Tf body formation","synonyms":[{"name":"decreased Tf body formation during mitotic cell cycle","type":"related"},{"name":"decreased Tf body formation during vegetative growth","type":"exact"},{"name":"decreased Tf clustering","type":"exact"},{"name":"decreased Tf2 body formation","type":"exact"},{"name":"decreased clustering of Tf2 bodies","type":"exact"},{"name":"reduced Tf body formation","type":"exact"}],"termid":"FYPO:0005545"}


id: PBO:0087626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the cytosolic chaperonin Cct ring complex; related to Tcp1p, required for the assembly of actin and tubulins in vivo; capable of binding Q/N rich proteins and mediating their folding","termid":"PBO:0087626"}


id: MONDO:0016124
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete drug and/or toxic myopathy (obsolete MONDO:0016124)","secondary_identifiers":["Orphanet:206985"],"termid":"MONDO:0016124","xrefs":{"Monarch":{"xref_id":"0016124"}}}


id: PBO:0017629
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cdt2 protein half-life 10-55 minutes","termid":"PBO:0017629"}


id: PBO:0046844
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FABP6 antisense RNA 1","termid":"PBO:0046844"}


id: FYPO:0007968
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An inviable phenotype observed in the vegetative growth phase of the life cycle after normal chromosome separation in which pushing forces exerted by microtubules protruding from the spindle pole bodies displace one of the daughter nuclei to the site of cytokinesis. The septum then physically divides that nucleus into two parts, giving rise to inviable daughter cell.","definition_xrefs":["PomBase:vw","PMID:26031557","PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cut following normal mitotic chromosome condensation","termid":"FYPO:0001055"},{"relation_name":"output_of","term_name":"long mitotic spindle microtubules protruding beyond spindle pole body","termid":"FYPO:0003787"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"has_part","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0002399"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000120"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"output_of","termid":"FYPO:0002403"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000337"},{"rel_name":"has_part","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000337","FYPO:0001985","FYPO:0002403","FYPO:0000631","FYPO:0002399","FYPO:0000002","FYPO:0000641","FYPO:0005447","FYPO:0000120","FYPO:0000004","FYPO:0000032"],"is_obsolete":false,"name":"cut with mitotic spindle microtubules protruding beyond spindle pole body","termid":"FYPO:0007968"}


id: GO:1900745
data:
  {"annotated_genes":["SJAG_03828","SJAG_00318","SJAG_06621","SJAG_06592","SJAG_01587","SJAG_02135","SJAG_02945","SJAG_00027","SJAG_06622","SJAG_01199","SJAG_02183","SJAG_03903"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95593,109248,109249,109250,109251,109252,109253,109254,112130,112788,117672,118584],"is_not":false,"summary":null,"term":"GO:1900745"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of p38MAPK cascade.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of MAPK cascade","termid":"GO:0043410"},{"relation_name":"is_a","term_name":"regulation of p38MAPK cascade","termid":"GO:1900744"},{"relation_name":"positively_regulates","term_name":"p38MAPK cascade","termid":"GO:0038066"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00027":null,"SJAG_00318":null,"SJAG_01199":null,"SJAG_01587":null,"SJAG_02135":null,"SJAG_02183":null,"SJAG_02945":null,"SJAG_03828":null,"SJAG_03903":null,"SJAG_06592":null,"SJAG_06621":null,"SJAG_06622":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of p38MAPK cascade","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of p38 MAPK cascade","type":"exact"},{"name":"activation of p38 cascade","type":"exact"},{"name":"activation of p38MAPK cascade","type":"narrow"},{"name":"positive regulation of osmosensory signaling MAPK cascade","type":"narrow"},{"name":"positive regulation of p38 MAPK cascade","type":"exact"},{"name":"positive regulation of p38 cascade","type":"exact"},{"name":"up regulation of p38 MAPK cascade","type":"exact"},{"name":"up regulation of p38 cascade","type":"exact"},{"name":"up regulation of p38MAPK cascade","type":"exact"},{"name":"up-regulation of p38 MAPK cascade","type":"exact"},{"name":"up-regulation of p38 cascade","type":"exact"},{"name":"up-regulation of p38MAPK cascade","type":"exact"},{"name":"upregulation of p38 MAPK cascade","type":"exact"},{"name":"upregulation of p38 cascade","type":"exact"},{"name":"upregulation of p38MAPK cascade","type":"exact"}],"termid":"GO:1900745","terms_by_termid":{"GO:1900745":null}}


id: PBO:0075833
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"somatostatin receptor 1","termid":"PBO:0075833"}


id: MOD:01617
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-threonine residue to O-(6-phosphomannosyl)-L-threonine.","definition_xrefs":["PubMed:20044576","RESID:AA0514"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-glycosyl-L-threonine","termid":"MOD:00005"},{"relation_name":"is_a","term_name":"mannosylated residue","termid":"MOD:00595"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"O-(6-phosphomannosyl)-L-threonine","synonyms":[{"name":"(2S,3R)-2-amino-3-[6-phosphonooxy-alpha-D-mannopyranosyloxy]butanoic acid","type":"exact"},{"name":"CARBOHYD O-linked (Man6P) threonine","type":"exact"},{"name":"O-(6-phosphomannosyl)-L-threonine","type":"exact"},{"name":"O3-(6-phosphomannosyl)threonine","type":"exact"}],"termid":"MOD:01617"}


id: PR:P40383
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 5'-3' exoribonuclease 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00728","PRO:DNx","PANTHER:PTHR12341:SF7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5'-3' exoribonuclease 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17A5.14","secondary_identifiers":["UniProtKB:P40383"],"synonyms":[{"name":"Exo II (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-XRN1","type":"exact"},{"name":"exonuclease 2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"exonuclease II (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"p140 (Schizosaccharomyces pombe 972h-)","type":"broad"}],"termid":"PR:P40383"}


id: PBO:0074337
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2","termid":"PBO:0074337"}


id: GO:0019560
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of histidine into other compounds, including hydantoin-5-propionate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-histidine catabolic process","termid":"GO:0006548"},{"relation_name":"is_a","term_name":"monocarboxylic acid metabolic process","termid":"GO:0032787"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0006520","GO:0044281"],"is_obsolete":false,"name":"histidine catabolic process to hydantoin-5-propionate","secondary_identifiers":["MetaCyc:HISHP-PWY"],"synonyms":[{"name":"histidine breakdown to hydantoin-5-propionate","type":"exact"},{"name":"histidine degradation to hydantoin-5-propionate","type":"exact"}],"termid":"GO:0019560"}


id: PR:000045542
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A cyclin-dependent kinase 1 (Schizosaccharomyces pombe) that has been phosphorylated on a Thr residue (Thr-167) within the T-Loop, and Thr-14 and Tyr-15 within the ATP binding region. UniProtKB:P04551, Thr-14/Thr-167, MOD:00047|Tyr-15, MOD:00048.","definition_xrefs":["PMID:26131711","PomBase:MAH","PRO:CNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclin-dependent kinase 1 (Schizosaccharomyces pombe)","termid":"PR:000036301"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cdc2/Phos:(T14,Y15,T167)","pombase_gene_id":"SPBC11B10.09","synonyms":[{"name":"Cdc2 phosphorylated 3","type":"related"},{"name":"Cdc2-Hf","type":"exact"},{"name":"PomBase_original_PRO_term_name: cyclin-dependent kinase 1 phosphorylated 3 (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-cdc2/Phos:3","type":"exact"},{"name":"UniProtKB:P04551, Thr-14/Thr-167, MOD:00047|Tyr-15, MOD:00048","type":"exact"},{"name":"cdc2/Phos:(T14,Y15,T167)","type":"exact"}],"termid":"PR:000045542"}


id: GO:0032488
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An intracellular signaling cassette in which a small monomeric GTPase of the Cdc42 subfamily relays a signal.","definition_xrefs":["GOC:mah","PMID:18558478"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Rho protein signal transduction","termid":"GO:0007266"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"Cdc42 protein signal transduction","synonyms":[{"name":"Cdc42 signaling","type":"related"},{"name":"Cdc42 signaling pathway","type":"related"},{"name":"cdc42 signalling pathway","type":"related"}],"termid":"GO:0032488"}


id: MONDO:0013708
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive non-syndromic intellectual disability","termid":"MONDO:0019502"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0037792","MONDO:0005066","MONDO:0006025"],"is_obsolete":false,"name":"intellectual disability, autosomal recessive 25","secondary_identifiers":["UMLS:C3280544","MEDGEN:482174","GARD:22561","OMIM:614346","DOID:0081198"],"synonyms":[{"name":"MRT25","type":"exact"},{"name":"intellectual disability, autosomal recessive 25","type":"exact"},{"name":"mental retardation, autosomal recessive 25","type":"related"}],"termid":"MONDO:0013708","xrefs":{"Monarch":{"xref_id":"0013708"}}}


id: GO:0019414
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An aerobic respiration process in which a sulfur-containing molecule (hydrogen sulfide, sulfur, sulfite, thiosulfate, and various polythionates) is oxidized.","definition_xrefs":["PMID:11425697"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aerobic respiration","termid":"GO:0009060"},{"relation_name":"is_a","term_name":"energy derivation by oxidation of reduced inorganic compounds","termid":"GO:0015975"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0008150","GO:0006091"],"is_obsolete":false,"name":"aerobic respiration, using sulfur or sulfate as electron donor","synonyms":[{"name":"aerobic respiration, using sulphur or sulphate as electron donor","type":"exact"}],"termid":"GO:0019414"}


id: GO:0090134
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of epithelial cells from one site to another that contributes to the migration of mesendodermal tissue.","definition_xrefs":["GOC:dph","GOC:tb","GOC:ascb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell migration involved in gastrulation","termid":"GO:0042074"},{"relation_name":"part_of","term_name":"mesendoderm migration","termid":"GO:0090133"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell migration involved in mesendoderm migration","termid":"GO:0090134"}


id: GO:0061281
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the connecting tubule of the mesonephric nephron acquires its identity.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"specification of mesonephric nephron tubule identity","termid":"GO:0061282"},{"relation_name":"is_a","term_name":"specification of connecting tubule identity","termid":"GO:0072085"},{"relation_name":"part_of","term_name":"mesonephric connecting tubule development","termid":"GO:0061272"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"specification of mesonephric connecting tubule identity","synonyms":[{"name":"specification of mesonephric collecting tubule identity","type":"exact"}],"termid":"GO:0061281"}


id: GO:1902762
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of embryonic skeletal joint development.","definition_xrefs":["GOC:mr","GO_REF:0000058","GOC:TermGenie","PMID:16575901"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of developmental process","termid":"GO:0050793"},{"relation_name":"regulates","term_name":"embryonic skeletal joint development","termid":"GO:0072498"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of embryonic skeletal joint development","termid":"GO:1902762"}


id: FYPO:0008199
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the trimethylation of lysine at position 9 of histone H3 at the centromere outer repeat is normal (i.e. indistinguishable from wild type).","direct_ancestors":[{"relation_name":"is_a","term_name":"normal histone H3-K9 methylation at centromere outer repeat during vegetative growth","termid":"FYPO:0003235"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001312","FYPO:0000257"],"is_obsolete":false,"name":"normal histone H3-K9 trimethylation at centromere outer repeat during vegetative growth","termid":"FYPO:0008199"}


id: PBO:0087750
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the TIM23 translocase complex; acts to couple Tim21p with the core Tim23 translocase; provides quality control for insertion of membrane proteins by regulating their release into the inner membrane by the TIM23 complex; absolutely required for mitochondrial import of presequence-containing proteins at elevated temperature; required for viability of cells lacking the mitochondrial genome (petite-negative phenotype)","termid":"PBO:0087750"}


id: GO:0031456
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of glycine betaine, N-trimethylglycine.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino-acid betaine biosynthetic process","termid":"GO:0006578"},{"relation_name":"is_a","term_name":"glycine betaine metabolic process","termid":"GO:0031455"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"glycine betaine biosynthetic process","synonyms":[{"name":"N-trimethylglycine biosynthesis","type":"exact"},{"name":"N-trimethylglycine biosynthetic process","type":"exact"},{"name":"glycine betaine anabolism","type":"exact"},{"name":"glycine betaine biosynthesis","type":"exact"},{"name":"glycine betaine formation","type":"exact"},{"name":"glycine betaine synthesis","type":"exact"}],"termid":"GO:0031456"}


id: GO:0097045
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A phospholipid scrambling process that results in the appearance of phosphatidylserine on the surface of activated blood platelets, and triggers the clotting system.","definition_xrefs":["GOC:bf","GOC:pr","GOC:lf","PMID:21107324"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane phospholipid scrambling","termid":"GO:0017121"},{"relation_name":"is_a","term_name":"positive regulation of blood coagulation","termid":"GO:0030194"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0061024","GO:0008150"],"is_obsolete":false,"name":"phosphatidylserine exposure on blood platelet","termid":"GO:0097045"}


id: PBO:0049996
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homeodomain interacting protein kinase 2","termid":"PBO:0049996"}


id: GO:0035423
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that terminates the activity of the active enzyme MAP kinase in the context of an innate immune response, a defense response mediated by germline encoded components that directly recognize components of potential pathogens.","definition_xrefs":["GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete inactivation of MAPK activity involved in innate immune response (obsolete GO:0035423)","termid":"GO:0035423"}


id: PBO:0034638
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_level_of_cell_surface_glycoprotein_gene_mRNA_during_vegetative_growth","termid":"PBO:0034638"}


id: GO:0045575
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The change in morphology and behavior of a basophil resulting from exposure to a cytokine, chemokine, soluble factor, or to (at least in mammals) an antigen which the basophil has specifically bound via IgE bound to Fc-epsilonRI receptors.","definition_xrefs":["ISBN:0781735149","GOC:mgi_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"granulocyte activation","termid":"GO:0036230"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"basophil activation","secondary_identifiers":["Wikipedia:Basophil_activation"],"termid":"GO:0045575"}


id: MONDO:1012286
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"warts between hooves, non-human animal","termid":"MONDO:1011766"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"warts between hooves, cattle","secondary_identifiers":["OMIA:001060-9913"],"termid":"MONDO:1012286","xrefs":{"Monarch":{"xref_id":"1012286"}}}


id: MONDO:0016614
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive metabolic cerebellar ataxia","termid":"MONDO:0020044"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0005559"],"is_obsolete":false,"name":"autosomal recessive ataxia due to PEX10 deficiency","secondary_identifiers":["UMLS:C5679614","MEDGEN:1843173","GARD:20666","Orphanet:247815"],"synonyms":[{"name":"mild peroxismal disorder due to PEX10 deficiency","type":"exact"}],"termid":"MONDO:0016614","xrefs":{"Monarch":{"xref_id":"0016614"}}}


id: PBO:0029765
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_double-strand_break_site","termid":"PBO:0029765"}


id: FYPO:0007214
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at one or more heterochromatin islands is abolished.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to chromatin during vegetative growth","termid":"FYPO:0001508"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"abolished protein localization to chromatin at heterochromatin island","synonyms":[{"name":"abolished protein localisation to chromatin at heterochromatin island during vegetative growth","type":"exact"},{"name":"abolished protein localization to chromatin at heterochromatin island during mitotic cell cycle","type":"related"},{"name":"protein localization to chromatin at heterochromatin island abolished","type":"exact"}],"termid":"FYPO:0007214"}


id: MONDO:0008742
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autosomal dominant form of severe congenital neutropenia.","definition_xrefs":["MONDO:patterns/autosomal_dominant"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"severe congenital neutropenia","termid":"MONDO:0018542"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0000426","MONDO:0005570"],"is_obsolete":false,"name":"autosomal dominant severe congenital neutropenia","secondary_identifiers":["DOID:0112130","MEDGEN:1665322","NCIT:C166155","Orphanet:486","GARD:9558","UMLS:C4749612"],"synonyms":[{"name":"severe congenital neutropenia autosomal dominant","type":"related"},{"name":"severe congenital neutropenia, autosomal dominant","type":"exact"}],"termid":"MONDO:0008742","xrefs":{"Monarch":{"xref_id":"0008742"}}}


id: MONDO:0800451
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"inherited aplastic anemia","termid":"MONDO:0001713"},{"relation_name":"is_a","term_name":"inherited thrombocytopenia","termid":"MONDO:0100241"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"congenital amegakaryocytic thrombocytopenia","secondary_identifiers":["icd11.foundation:801723173","OMIMPS:604498","UMLS:C1327915","MEDGEN:272171"],"synonyms":[{"name":"congenital amegakaryocytic thrombocytopenia","type":"exact"}],"termid":"MONDO:0800451","xrefs":{"Monarch":{"xref_id":"0800451"}}}


id: PATO:0001881
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's forming two equal obtuse triangles with a short side in common.","definition_xrefs":["RKC:RKC","ISBN:0881923214"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arrow-shaped","synonyms":[{"name":"sagittate","type":"exact"}],"termid":"PATO:0001881"}


id: GO:0046551
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the developmental fate of a cell becomes restricted such that it will develop into a retinal cone cell. A retinal cone cell is one of the two photoreceptor subtypes in a camera-type eye.","definition_xrefs":["PMID:3076112","GOC:mtg_sensu","PMID:3937883"],"direct_ancestors":[{"relation_name":"is_a","term_name":"camera-type eye photoreceptor cell fate commitment","termid":"GO:0060220"},{"relation_name":"part_of","term_name":"retinal cone cell differentiation","termid":"GO:0042670"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"retinal cone cell fate commitment","termid":"GO:0046551"}


id: MONDO:0800224
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amyotrophic lateral sclerosis, susceptibility to, 13","secondary_identifiers":["UMLS:C3149907","MEDGEN:461257"],"synonyms":[{"name":"ALS13","type":"exact"}],"termid":"MONDO:0800224","xrefs":{"Monarch":{"xref_id":"0800224"}}}


id: PR:Q9UUJ0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pvg5 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UUJ0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyruvylated Gal-beta-1,3-epitope synthesis protein 5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22F8.02c","synonyms":[{"name":"PvGal synthesis protein 5 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-pvg5","type":"exact"},{"name":"meiotically up-regulated gene 50 protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UUJ0"}


id: FYPO:0007396
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of heme into the cell occurs to a lower extent than normal.","definition_xrefs":["GO:0140420","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular process during vegetative growth","termid":"FYPO:0001362"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"decreased heme import","synonyms":[{"name":"decreased haem import","type":"exact"},{"name":"decreased heme import during mitotic cell cycle","type":"related"},{"name":"decreased heme import during vegetative growth","type":"exact"},{"name":"decreased heme import into cell","type":"exact"},{"name":"reduced heme import","type":"exact"}],"termid":"FYPO:0007396"}


id: PBO:0082804
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of U1 snRNP required for mRNA splicing via spliceosome; yeast specific, no metazoan counterpart; interacts with mRNA in commitment complex","termid":"PBO:0082804"}


id: PBO:0063238
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protocadherin alpha 3","termid":"PBO:0063238"}


id: GO:0004812
data:
  {"annotated_genes":["SJAG_04738","SJAG_04094","SJAG_01197","SJAG_04409","SJAG_02977","SJAG_02263","SJAG_02517","SJAG_03626","SJAG_03545","SJAG_00420","SJAG_00488","SJAG_04762","SJAG_01259","SJAG_01522","SJAG_02236","SJAG_03585","SJAG_03277","SJAG_04285","SJAG_16456","SJAG_01797","SJAG_01159","SJAG_00243","SJAG_04473","SJAG_00103","SJAG_00443","SJAG_04482","SJAG_01352","SJAG_04856","SJAG_02015","SJAG_01235","SJAG_02428","SJAG_04840","SJAG_00653","SJAG_02206","SJAG_03071","SJAG_02615"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[69436],"is_not":false,"summary":null,"term":"GO:0004812"},{"annotations":[76209],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004813"},{"annotations":[76811],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004814"},{"annotations":[105395,102585],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004816"},{"annotations":[77091,76986],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004815"},{"annotations":[72714],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004817"},{"annotations":[70495,73364],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004818"},{"annotations":[80547],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004819"},{"annotations":[73200],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004820"},{"annotations":[78974],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004821"},{"annotations":[71961,75671],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004822"},{"annotations":[76125,78334],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004823"},{"annotations":[73852,72157],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004824"},{"annotations":[69809,78513],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004825"},{"annotations":[79240,77924,79036],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004826"},{"annotations":[70993,77676],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004827"},{"annotations":[73255,77156],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004828"},{"annotations":[73940,71194],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004829"},{"annotations":[70412,71665],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004830"},{"annotations":[79079,71038],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004831"},{"annotations":[70209,70440],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004832"}]},"cv_name":"molecular_function","definition":"Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ligase activity, forming carbon-oxygen bonds","termid":"GO:0016875"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a 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ligase activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000043":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0017100","EC:6.1.1.-","GO:0016876"],"synonyms":[{"name":"aminoacyl-tRNA synthetase activity","type":"exact"},{"name":"aminoacyl-tRNA synthetase auxiliary protein activity","type":"related"},{"name":"ligase activity, forming aminoacyl-tRNA and related compounds","type":"broad"}],"termid":"GO:0004812","terms_by_termid":{"GO:0004812":null,"GO:0004813":null,"GO:0004814":null,"GO:0004815":null,"GO:0004816":null,"GO:0004817":null,"GO:0004818":null,"GO:0004819":null,"GO:0004820":null,"GO:0004821":null,"GO:0004822":null,"GO:0004823":null,"GO:0004824":null,"GO:0004825":null,"GO:0004826":null,"GO:0004827":null,"GO:0004828":null,"GO:0004829":null,"GO:0004830":null,"GO:0004831":null,"GO:0004832":null}}


id: PBO:0086609
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; GFP-fusion protein expression is induced in response to the DNA-damaging agent MMS","termid":"PBO:0086609"}


id: GO:0010948
data:
  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id: GO:0099552
data:
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id: PBO:0043625
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COP1 E3 ubiquitin ligase","termid":"PBO:0043625"}


id: GO:0045763
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving amino acid.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of amino acid metabolic process","termid":"GO:0006521"},{"relation_name":"is_a","term_name":"negative regulation of metabolic process","termid":"GO:0009892"},{"relation_name":"negatively_regulates","term_name":"amino acid metabolic process","termid":"GO:0006520"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006520"},{"rel_name":"negatively_regulates","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0008150","GO:0006520"],"is_obsolete":false,"name":"negative regulation of amino acid metabolic process","synonyms":[{"name":"down regulation of amino acid metabolic process","type":"exact"},{"name":"down-regulation of amino acid metabolic process","type":"exact"},{"name":"downregulation of amino acid metabolic process","type":"exact"},{"name":"inhibition of amino acid metabolic process","type":"narrow"},{"name":"negative regulation of amino acid metabolism","type":"exact"}],"termid":"GO:0045763"}


id: PBO:0078698
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Leu (anticodon CAA) 1-1","termid":"PBO:0078698"}


id: GO:0046384
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving 2-deoxyribose 1-phosphate, the phosphorylated sugar 1-phospho-2-deoxyribose.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"deoxyribose phosphate metabolic process","termid":"GO:0019692"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"2-deoxyribose 1-phosphate metabolic process","secondary_identifiers":["GO:0046388"],"synonyms":[{"name":"2-deoxyribose 1-phosphate metabolism","type":"exact"},{"name":"deoxyribose 1-phosphate metabolic process","type":"exact"},{"name":"deoxyribose 1-phosphate metabolism","type":"exact"}],"termid":"GO:0046384"}


id: GO:0070214
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that contains the protein-tyrosine kinase CSK and the GTPase-activating protein (GAP)-associated p62 (GAP-A.p62); may mediate translocation of proteins, including GAP and CSK, to membrane or cytoskeletal regions upon c-Src activation.","definition_xrefs":["PMID:7544435"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein-containing complex","termid":"GO:0140535"},{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"},{"relation_name":"part_of","term_name":"cell leading edge","termid":"GO:0031252"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"CSK-GAP-A.p62 complex","termid":"GO:0070214"}


id: PBO:0002474
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U2 snRNP-associated protein Sap155","termid":"PBO:0002474"}


id: PBO:0067546
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 692, pseudogene","termid":"PBO:0067546"}


id: GO:0015634
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Enables the transfer of lipopolysaccharide from the inside of the cell to the outside of the cell across a membrane. A lipopolysaccharide is any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria. Lipopolysaccharides consist three covalently linked regions, lipid A, core oligosaccharide, and an O side chain. Lipid A is responsible for the toxicity of the lipopolysaccharide.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729"],"gene_count":0,"genotype_count":0,"name":"obsolete lipopolysaccharide exporter activity (obsolete GO:0015634)","synonyms":[{"name":"LPS exporter activity","type":"exact"}],"termid":"GO:0015634"}


id: FYPO:0002086
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells contain more exocytic vesicles than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic vesicles present in increased numbers","termid":"FYPO:0003416"},{"relation_name":"output_of","term_name":"abnormal exocytosis during vegetative growth","termid":"FYPO:0002089"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0000138","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"exocytic vesicles present in increased numbers","synonyms":[{"name":"accumulation of exocytic vesicles","type":"related"},{"name":"additional exocytic vesicles present","type":"exact"},{"name":"exocytic vesicles present in greater numbers","type":"exact"},{"name":"exocytic vesicles present in increased numbers during mitotic cell cycle","type":"related"},{"name":"exocytic vesicles present in increased numbers during vegetative growth","type":"exact"},{"name":"exocytotic vesicles present in increased numbers","type":"exact"},{"name":"extra exocytic vesicles","type":"exact"},{"name":"post-Golgi secretory vesicles present in increased numbers","type":"related"}],"termid":"FYPO:0002086"}


id: FYPO:0003635
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which U2 snRNP binding by a gene product does not occur. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein-protein interaction","termid":"FYPO:0000705"},{"relation_name":"is_a","term_name":"abnormal ribonucleoprotein complex binding","termid":"FYPO:0003632"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000702"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000702","FYPO:0000652","FYPO:0000707"],"is_obsolete":false,"name":"abolished U2 snRNP binding","synonyms":[{"name":"U2 snRNP binding abolished","type":"exact"}],"termid":"FYPO:0003635"}


id: GO:0090581
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein S-phosphocysteine + mannosylglycerate(out) = protein cysteine + mannosylglycerate phosphate(in).","definition_xrefs":["PMID:14645248"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-phosphocysteine-sugar phosphotransferase activity","termid":"GO:0090563"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0003824","GO:0016740","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"protein-phosphocysteine-mannosylglycerate-phosphotransferase system transporter activity","termid":"GO:0090581"}


id: MONDO:0006319
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete nevus of Ota (obsolete MONDO:0006319)","termid":"MONDO:0006319","xrefs":{"Monarch":{"xref_id":"0006319"}}}


id: FYPO:0006479
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which cohesin loading is abnormal. Cohesin loading is the topological linking of a cohesin ring complex to chromatin.","definition_xrefs":["GO:0071921","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation phenotype","termid":"FYPO:0000145"},{"relation_name":"is_a","term_name":"abnormal chromosome organization","termid":"FYPO:0000641"},{"relation_name":"is_a","term_name":"abnormal protein localization to chromatin","termid":"FYPO:0001679"},{"relation_name":"is_a","term_name":"abnormal cell cycle process","termid":"FYPO:0002734"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000641","FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0000138","FYPO:0000631"],"is_obsolete":false,"name":"abnormal cohesin loading","synonyms":[{"name":"abnormal cohesin association with chromatin","type":"exact"},{"name":"abnormal cohesin localisation to chromatin","type":"exact"},{"name":"abnormal cohesin localization to chromatin","type":"exact"}],"termid":"FYPO:0006479"}


id: GO:0060968
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the rate, frequency, or extent of gene silencing, the transcriptional or post-transcriptional process carried out at the cellular level that results in long-term gene inactivation.","definition_xrefs":["GOC:dph","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of gene silencing (obsolete GO:0060968)","termid":"GO:0060968"}


id: PBO:0055746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lncRNA regulator of hepatic lineages 1","termid":"PBO:0055746"}


id: GO:0045570
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the growth of the imaginal disc.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of developmental growth","termid":"GO:0048638"},{"relation_name":"regulates","term_name":"imaginal disc growth","termid":"GO:0007446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of imaginal disc growth","termid":"GO:0045570"}


id: PBO:0082599
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Clathrin coat accessory factor; involved in clathrin-mediated vesicle trafficking; may function to link the AP-1 clathrin adaptor complex with the Rab GTPase Ypt31p; has structural similarity to G-proteins; mouse homolog Aagab (p34) functionally complements irc6 null mutation; null mutant displays increased levels of spontaneous Rad52p foci","termid":"PBO:0082599"}


id: GO:0043781
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + cobalt-factor II = S-adenosyl-L-homocysteine + cobalt-factor III.","definition_xrefs":["EC:2.1.1.151"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016741","GO:0003674","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"cobalt-factor II C20-methyltransferase activity","secondary_identifiers":["MetaCyc:RXN-8760","RHEA:17997"],"synonyms":[{"name":"CbiL","type":"narrow"},{"name":"S-adenosyl-L-methionine:cobalt-factor-II C20-methyltransferase activity","type":"related"},{"name":"cobalt-factor II C20 methyltransferase activity","type":"exact"},{"name":"cobalt-precorrin-2 C(20)-methyltransferase activity","type":"related"}],"termid":"GO:0043781"}


id: PBO:0078588
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 60 pseudogene 1, Y-linked","termid":"PBO:0078588"}


id: PBO:0052670
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 8 pseudogene 38","termid":"PBO:0052670"}


id: GO:0035516
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a methylated nucleobase within DNA + 2-oxoglutarate + O2 = a nucleobase within DNA + formaldehyde + succinate + CO2. Catalyzes oxidative demethylation of the DNA base lesions N1- methyladenine, N3-methylcytosine, N1-methylguanine, and N3- methylthymine. Can also act of RNA.","definition_xrefs":["PMID:19786499","PMID:12594517","PMID:16482161","PMID:18775698","RHEA:30299"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2-oxoglutarate-dependent dioxygenase activity","termid":"GO:0016706"},{"relation_name":"is_a","term_name":"DNA demethylase activity","termid":"GO:0035514"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491","GO:0140097"],"is_obsolete":false,"name":"broad specificity oxidative DNA demethylase activity","secondary_identifiers":["MetaCyc:RXN-12353","EC:1.14.11.33","Reactome:R-HSA-112123","GO:0103051","GO:0103053","GO:0103052","Reactome:R-HSA-112118"],"synonyms":[{"name":"1-ethyladenine demethylase activity","type":"narrow"},{"name":"2-oxoglutarate-dependent DNA demethylase","type":"exact"},{"name":"5-formylcytosine dioxygenase activity","type":"narrow"},{"name":"5-hydroxymethylcytosine dioxygenase activity","type":"narrow"},{"name":"5fC dioxygenase","type":"narrow"},{"name":"5hmC dioxygenase","type":"narrow"},{"name":"N1-methyladenine demethylase activity","type":"narrow"},{"name":"N3-methylcytosine demethylase activity","type":"narrow"},{"name":"oxidative DNA demethylase activity","type":"broad"}],"termid":"GO:0035516"}


id: PBO:0078839
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Pro (anticodon TGG) 3-3","termid":"PBO:0078839"}


id: GO:0030400
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A recruiting factor or adaptor molecule associated with the proteasome that activates degradation of specific proteasomal substrates and links them to the degradation machinery; it is not involved in ubiquitination; does not possess proteolytic activity.","definition_xrefs":["PMID:11500370"],"gene_count":0,"genotype_count":0,"name":"obsolete protease substrate recruitment factor activity (obsolete GO:0030400)","synonyms":[{"name":"protease substrate recruitment factor activity","type":"exact"}],"termid":"GO:0030400"}


id: PR:000027551
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A histone H2A.2 phosphorylated 1 in Schizosaccharomyces pombe. Phosphorylation motif is SQE. Example: UniProtKB:P04910-1, Ser-128, MOD:00046.","definition_xrefs":["PomBase:MAH","PMID:21516229","PMID:15226425"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H2A-beta (Schizosaccharomyces pombe 972h-)","termid":"PR:P04910"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hta2/Phos(S127)","pombase_gene_id":"SPAC19G12.06c","synonyms":[{"name":"PomBase_original_PRO_term_name: histone H2A-beta phosphorylated 1 (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-HTA2/Phos:1","type":"exact"},{"name":"gamma-H2A (Schizosaccharomyces pombe)","type":"related"},{"name":"histone H2A.2 phosphorylated 1 (Schizosaccharomyces pombe)","type":"exact"},{"name":"hta2/Phos(S127)","type":"exact"},{"name":"hta2/Phos:(S128)","type":"exact"}],"termid":"PR:000027551"}


id: PBO:0069303
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 559, pseudogene","termid":"PBO:0069303"}


id: PBO:0018141
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit L20, Mrpl20 (predicted)","termid":"PBO:0018141"}


id: GO:0010851
data:
  {"annotated_genes":["SJAG_02444"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[94569],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010856"}]},"cv_name":"molecular_function","definition":"Binds to and modulates the activity of an enzyme that catalyzes a ring closure reaction.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme regulator activity","termid":"GO:0030234"},{"relation_name":"regulates","term_name":"cyclase activity","termid":"GO:0009975"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02444":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"regulates","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"regulates","termid":"GO:0009975"}],"interesting_parent_ids":["GO:0009975","GO:0003674","GO:0098772","GO:0030234","GO:0003824"],"is_obsolete":false,"name":"cyclase regulator activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0010851","terms_by_termid":{"GO:0010856":null}}


id: PBO:0058618
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6750","termid":"PBO:0058618"}


id: MONDO:0001651
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare squamous cell carcinoma that arises from the scrotum. It has been associated with exposure to environmental and industrial carcinogens. The prognosis depends on the extent of lymph node involvement.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"scrotal carcinoma","termid":"MONDO:0002650"},{"relation_name":"is_a","term_name":"squamous cell carcinoma","termid":"MONDO:0005096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"scrotum squamous cell carcinoma","secondary_identifiers":["DOID:13159","SCTID:276860003","NCIT:C4643","MEDGEN:138101","UMLS:C0349551"],"synonyms":[{"name":"scrotal squamous cell carcinoma","type":"exact"},{"name":"scrotum squamous cell carcinoma","type":"exact"},{"name":"squamous cell carcinoma of scrotum","type":"related"},{"name":"squamous cell carcinoma of the scrotum","type":"exact"}],"termid":"MONDO:0001651","xrefs":{"Monarch":{"xref_id":"0001651"}}}


id: GO:0048887
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the cupula over time, from its formation to the mature structure. The cupula is secreted by mantle cells and the ciliary bundles of all of the hair cells of the neuromast are embedded in it. The cupula provides a mechanical linkage between the hair cells and the external hydrodynamic environment. The cupula of superficial neuromasts grows continuously, while the height of the cupula of canal neuromasts is limited by canal diameter.","definition_xrefs":["ISBN:0125296509"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"neuromast development","termid":"GO:0048884"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cupula development","termid":"GO:0048887"}


id: PBO:0015654
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sequence orphan, predicted cell surface protein","termid":"PBO:0015654"}


id: PBO:0070122
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 36 pseudogene","termid":"PBO:0070122"}


id: PBO:0089222
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EST1 family nonsense-mediated mRNA decay (NMD) pathway protein Ebs1","termid":"PBO:0089222"}


id: GO:1902743
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of lamellipodium organization.","definition_xrefs":["GOC:als","PMID:16054028","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of plasma membrane bounded cell projection organization","termid":"GO:0120035"},{"relation_name":"regulates","term_name":"lamellipodium organization","termid":"GO:0097581"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of lamellipodium organization","termid":"GO:1902743"}


id: PBO:0041836
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cancer susceptibility 16","termid":"PBO:0041836"}


id: PBO:0087731
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the Shu complex (aka PCSS complex); Shu complex also includes Psy3, Shu1, Shu2, and promotes error-free DNA repair; Shu complex mediates inhibition of Srs2p anti-recombinase function; promotes formation of Rad51p filaments; Psy3p and Csm2p contain similar DNA-binding regions which work together to form a single DNA binding site; required for accurate chromosome segregation during meiosis","termid":"PBO:0087731"}


id: PBO:0029354
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_chromosome_at_long_terminal_repeat","termid":"PBO:0029354"}


id: GO:0061727
data:
  {"annotated_genes":["SJAG_02106","SJAG_02960","SJAG_04674","SJAG_02988","SJAG_04726","SJAG_04404","SJAG_01596"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[59284,61046,105369],"is_not":false,"summary":null,"term":"GO:0061727"},{"annotations":[73289,74832,103108,61047],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019243"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of methylglyoxal, CH3-CO-CHO, into lactate.","definition_xrefs":["GOC:dph","PMID:2198020"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lactate metabolic process","termid":"GO:0006089"},{"relation_name":"is_a","term_name":"methylglyoxal catabolic process","termid":"GO:0051596"}],"gene_count":7,"genes_by_uniquename":{"SJAG_01596":null,"SJAG_02106":null,"SJAG_02960":null,"SJAG_02988":null,"SJAG_04404":null,"SJAG_04674":null,"SJAG_04726":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"methylglyoxal catabolic process to lactate","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"termid":"GO:0061727","terms_by_termid":{"GO:0019243":null,"GO:0061727":null}}


id: PBO:0044424
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 3 subfamily A member 43","termid":"PBO:0044424"}


id: GO:0018634
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: alpha-pinene + NADH + H+ + O2 = NAD+ + H2O + alpha-pinene oxide.","definition_xrefs":["RHEA:32891"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"alpha-pinene monooxygenase (NADH) activity","secondary_identifiers":["EC:1.14.13.155","UM-BBD_reactionID:r0742"],"synonyms":[{"name":"alpha-pinene monooxygenase [NADH] activity","type":"exact"}],"termid":"GO:0018634"}


id: FYPO:0007348
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which trimethylation of lysine at position 36 of histone H3 is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone H3-K36 methylation during vegetative growth","termid":"FYPO:0002918"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0002274","FYPO:0002494","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"decreased histone H3-K36 trimethylation during vegetative growth","synonyms":[{"name":"decreased histone H3 K36 trimethylation during vegetative growth","type":"exact"},{"name":"decreased histone H3-K36 trimethylation during mitotic cell cycle","type":"related"},{"name":"decreased histone H3K36me3 during vegetative growth","type":"exact"},{"name":"decreased histone lysine H3 K36 trimethylation during vegetative growth","type":"exact"},{"name":"reduced histone H3-K36 trimethylation during vegetative growth","type":"exact"}],"termid":"FYPO:0007348"}


id: PBO:0039344
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ALX homeobox 4","termid":"PBO:0039344"}


id: GO:1900236
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of Kit signaling pathway.","definition_xrefs":["GOC:signaling","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine-mediated signaling pathway","termid":"GO:0001961"},{"relation_name":"is_a","term_name":"regulation of Kit signaling pathway","termid":"GO:1900234"},{"relation_name":"positively_regulates","term_name":"Kit signaling pathway","termid":"GO:0038109"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of Kit signaling pathway","synonyms":[{"name":"activation of Kit signaling pathway","type":"narrow"},{"name":"activation of stem cell factor receptor signaling pathway","type":"exact"},{"name":"activation of stem cell factor signaling pathway","type":"exact"},{"name":"positive regulation of Kit signalling pathway","type":"exact"},{"name":"positive regulation of stem cell factor receptor signaling pathway","type":"exact"},{"name":"positive regulation of stem cell factor signaling pathway","type":"exact"},{"name":"up regulation of Kit signaling pathway","type":"exact"},{"name":"up regulation of stem cell factor receptor signaling pathway","type":"exact"},{"name":"up regulation of stem cell factor signaling pathway","type":"exact"},{"name":"up-regulation of Kit signaling pathway","type":"exact"},{"name":"up-regulation of stem cell factor receptor signaling pathway","type":"exact"},{"name":"up-regulation of stem cell factor signaling pathway","type":"exact"},{"name":"upregulation of Kit signaling pathway","type":"exact"},{"name":"upregulation of stem cell factor receptor signaling pathway","type":"exact"},{"name":"upregulation of stem cell factor signaling pathway","type":"exact"}],"termid":"GO:1900236"}


id: GO:0015245
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of fatty acids from one side of a membrane to the other. Fatty acids are aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid transmembrane transporter activity","termid":"GO:0008028"},{"relation_name":"is_a","term_name":"lipid transmembrane transporter activity","termid":"GO:0170055"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"fatty acid transmembrane transporter activity","secondary_identifiers":["GO:0015246","Reactome:R-HSA-879585","Reactome:R-HSA-9032315","Reactome:R-HSA-9032323","Reactome:R-HSA-5627891"],"synonyms":[{"name":"fatty acid transporter activity","type":"related"},{"name":"fatty acyl transporter activity","type":"exact"},{"name":"fatty-acyl group transporter activity","type":"broad"},{"name":"peroxisomal fatty acyl transporter","type":"narrow"}],"termid":"GO:0015245"}


id: PBO:0087791
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO E3 ligase; promotes attachment of small ubiquitin-related modifier sumo (Smt3p) to primarily cytoplasmic proteins; regulates Rsp5p ubiquitin ligase activity and is in turn itself regulated by Rsp5p; required for sumoylation of septins and histone H3 variant Cse4p, a prerequisite for STUbL-mediated Ub-dependent degradation; localizes to the septin ring; acts as an adapter between E2, Ubc9p and substrates; tends to compensate for survival of DNA damage in absence of Nfi1p","termid":"PBO:0087791"}


id: PBO:0047821
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"forkhead box O1B (pseudogene)","termid":"PBO:0047821"}


id: GO:2001269
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of cysteine-type endopeptidase activity involved in apoptotic signaling pathway.","definition_xrefs":["GOC:mtg_apoptosis"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway (obsolete GO:2001269)","synonyms":[{"name":"positive regulation of cysteine-type endopeptidase activity involved in apoptotic signalling pathway","type":"exact"},{"name":"positive regulation of initiator caspase activity","type":"narrow"}],"termid":"GO:2001269"}


id: MONDO:0018101
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Familial primary hypomagnesemia with normocalciuria and normocalcemia (FPHNN) is a form of familial primary hypomagnesemia (FPH), characterized by low serum magnesium (Mg) values but inappropriate normal urinary Mg values (i.e. renal hypomagnesemia). The typical symptoms are weakness of the limbs, vertigo, headaches, seizures, brisk tendon reflexes and mild to moderate psychomotor delay.","definition_xrefs":["Orphanet:34527"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial primary hypomagnesemia with normocalcuria","termid":"MONDO:0017626"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0005240"],"is_obsolete":false,"name":"familial primary hypomagnesemia with normocalciuria and normocalcemia","secondary_identifiers":["SCTID:725031005","MEDGEN:1390277","UMLS:C4510731"],"termid":"MONDO:0018101","xrefs":{"Monarch":{"xref_id":"0018101"}}}


id: FYPO:0005891
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a nuclease activity is decreased when the cell is subject to nitrogen starvation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased nuclease activity","termid":"FYPO:0004253"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0001985","FYPO:0000654","FYPO:0000707","FYPO:0000661"],"is_obsolete":false,"name":"decreased nuclease activity during nitrogen starvation","synonyms":[{"name":"decreased nuclease activity during nitrogen depletion","type":"exact"},{"name":"decreased nuclease activity during nitrogen deprivation","type":"exact"},{"name":"reduced nuclease activity during nitrogen starvation","type":"exact"}],"termid":"FYPO:0005891"}


id: GO:1905816
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of dorsal/ventral axon guidance.","definition_xrefs":["PMID:18434533","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of axon guidance","termid":"GO:1902668"},{"relation_name":"is_a","term_name":"regulation of dorsal/ventral axon guidance","termid":"GO:1905815"},{"relation_name":"negatively_regulates","term_name":"dorsal/ventral axon guidance","termid":"GO:0033563"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of dorsal/ventral axon guidance","synonyms":[{"name":"down regulation of dorsal-ventral axon guidance","type":"exact"},{"name":"down regulation of dorsal/ventral axon guidance","type":"exact"},{"name":"down regulation of dorsal/ventral axon pathfinding","type":"exact"},{"name":"down regulation of dorsoventral axon guidance","type":"exact"},{"name":"down-regulation of dorsal-ventral axon guidance","type":"exact"},{"name":"down-regulation of dorsal/ventral axon guidance","type":"exact"},{"name":"down-regulation of dorsal/ventral axon pathfinding","type":"exact"},{"name":"down-regulation of dorsoventral axon guidance","type":"exact"},{"name":"downregulation of dorsal-ventral axon guidance","type":"exact"},{"name":"downregulation of dorsal/ventral axon guidance","type":"exact"},{"name":"downregulation of dorsal/ventral axon pathfinding","type":"exact"},{"name":"downregulation of dorsoventral axon guidance","type":"exact"},{"name":"inhibition of dorsal-ventral axon guidance","type":"narrow"},{"name":"inhibition of dorsal/ventral axon guidance","type":"narrow"},{"name":"inhibition of dorsal/ventral axon pathfinding","type":"narrow"},{"name":"inhibition of dorsoventral axon guidance","type":"narrow"},{"name":"negative regulation of dorsal-ventral axon guidance","type":"exact"},{"name":"negative regulation of dorsal/ventral axon pathfinding","type":"exact"},{"name":"negative regulation of dorsoventral axon guidance","type":"exact"}],"termid":"GO:1905816"}


id: MONDO:0007538
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any amelogenesis imperfecta in which the cause of the disease is a mutation in the FAM83H gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hypocalcified amelogenesis imperfecta","termid":"MONDO:0968955"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amelogenesis imperfecta, type 3A","secondary_identifiers":["UMLS:C5886770","MEDGEN:1854533","MESH:C562880","SCTID:109471001","DOID:0110055","OMIM:130900"],"synonyms":[{"name":"ADHCAI","type":"exact"},{"name":"AI3","type":"exact"},{"name":"AI3A","type":"related"},{"name":"FAM83H amelogenesis imperfecta","type":"exact"},{"name":"amelogenesis imperfecta caused by mutation in FAM83H","type":"exact"},{"name":"amelogenesis imperfecta hypomineralization type","type":"broad"},{"name":"amelogenesis imperfecta type 3","type":"broad"},{"name":"amelogenesis imperfecta type 3A","type":"related"},{"name":"amelogenesis imperfecta type III","type":"broad"},{"name":"amelogenesis imperfecta, hypocalcification type, autosomal dominant","type":"related"},{"name":"amelogenesis imperfecta, hypomineralization type","type":"related"},{"name":"amelogenesis imperfecta, type 3","type":"related"},{"name":"amelogenesis imperfecta, type 3A","type":"exact"},{"name":"amelogenesis imperfecta, type III","type":"related"},{"name":"amelogenesis imperfecta, type IIIA","type":"related"},{"name":"autosomal dominant amelogenesis imperfecta hypocalcification type","type":"exact"}],"termid":"MONDO:0007538","xrefs":{"Monarch":{"xref_id":"0007538"}}}


id: GO:0043744
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + N-acetyl-L-2-aminoadipate = ADP + N-acetyl-L-2-aminoadipate 6-phosphate.","definition_xrefs":["PMID:25392000","PMID:26966182","RHEA:41944"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, carboxyl group as acceptor","termid":"GO:0016774"},{"relation_name":"is_a","term_name":"amino acid kinase activity","termid":"GO:0019202"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016301","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"N2-acetyl-L-aminoadipate kinase activity","secondary_identifiers":["GO:0043868","MetaCyc:RXN-5182"],"synonyms":[{"name":"N-acetyl-L-aminoadipate 5-phosphotransferase activity","type":"exact"},{"name":"N-acetylaminoadipate kinase activity","type":"exact"},{"name":"[LysW]-aminoadipate kinase","type":"related"},{"name":"acetylaminoadipate kinase activity","type":"exact"}],"termid":"GO:0043744"}


id: PBO:0081537
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 446","termid":"PBO:0081537"}


id: GO:0002526
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Inflammation which comprises a rapid, short-lived, relatively uniform response to acute injury or antigenic challenge and is characterized by accumulations of fluid, plasma proteins, and granulocytic leukocytes. An acute inflammatory response occurs within a matter of minutes or hours, and either resolves within a few days or becomes a chronic inflammatory response.","definition_xrefs":["GOC:add","ISBN:0781735149","GO_REF:0000022"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inflammatory response","termid":"GO:0006954"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"acute inflammatory response","termid":"GO:0002526"}


id: PBO:0004871
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S3 (predicted)","termid":"PBO:0004871"}


id: PBO:0075178
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNRPE pseudogene 8","termid":"PBO:0075178"}


id: PBO:0091749
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"II:g.1950050_1950051insG","termid":"PBO:0091749"}


id: PBO:0030307
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-mislocalized_septum,_near_new_end","termid":"PBO:0030307"}


id: GO:0035628
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the cystic duct over time, from its formation to the mature structure. The cystic duct runs from the gallbladder to the common bile duct.","definition_xrefs":["PMID:20614624"],"direct_ancestors":[{"relation_name":"is_a","term_name":"common bile duct development","termid":"GO:0061009"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cystic duct development","termid":"GO:0035628"}


id: GO:1901913
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of capsule organization.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular component organization","termid":"GO:0051128"},{"relation_name":"regulates","term_name":"capsule organization","termid":"GO:0045230"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of capsule organization","synonyms":[{"name":"regulation of capsule organisation","type":"exact"},{"name":"regulation of capsule organization and biogenesis","type":"related"}],"termid":"GO:1901913"}


id: PBO:0080143
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vesicle amine transport 1","termid":"PBO:0080143"}


id: FYPO:0007339
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which of RNAs transcribed from dg repeats in the centromere outer repeat region are present at higher levels than normal.","definition_xrefs":["PomBase:mah","PMID:18957202"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased centromeric outer repeat transcript level","termid":"FYPO:0000220"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0006551","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"increased cen-dg RNA level","synonyms":[{"name":"increased cen-dg RNA accumulation","type":"related"},{"name":"increased cen-dg RNA level during mitotic cell cycle","type":"related"},{"name":"increased cen-dg RNA level during vegetative growth","type":"exact"},{"name":"increased cen-dg transcript level","type":"exact"},{"name":"increased level of cen-dg RNA","type":"exact"},{"name":"increased level of cen-dg transcripts","type":"exact"},{"name":"increased level of centromeric dg repeat RNA","type":"exact"},{"name":"increased level of centromeric dg repeat transcripts","type":"exact"}],"termid":"FYPO:0007339"}


id: PBO:0045806
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"early endosome antigen 1","termid":"PBO:0045806"}


id: GO:0007502
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the digestive tract mesoderm over time, from its formation to the mature structure. The digestive tract mesoderm is portion of the middle layer of the three primary germ layers of the embryo which will go on to form part of the digestive tract of the organism.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tissue development","termid":"GO:0009888"},{"relation_name":"part_of","term_name":"mesoderm development","termid":"GO:0007498"},{"relation_name":"part_of","term_name":"digestive tract development","termid":"GO:0048565"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"digestive tract mesoderm development","termid":"GO:0007502"}


id: PBO:0068290
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribonuclease L","termid":"PBO:0068290"}


id: PBO:0034508
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_meiotic_sister_chromatid_segregation","termid":"PBO:0034508"}


id: MONDO:0010561
data:
  {"annotated_genes":["SJAG_01047"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86233],"is_not":false,"summary":null,"term":"MONDO:0010561"}]},"cv_name":"mondo","definition":"A rare genetic neurological disorder characterized by psychomotor and growth retardation, facial dysmorphism, digit abnormalities, and progressive skeletal changes.","definition_xrefs":["Orphanet:192"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"excluded_subClassOf","term_name":"intellectual disability","termid":"MONDO:0001071"},{"relation_name":"excluded_subClassOf","term_name":"epilepsy","termid":"MONDO:0005027"},{"relation_name":"excluded_subClassOf","term_name":"scoliosis","termid":"MONDO:0005392"},{"relation_name":"excluded_subClassOf","term_name":"obsolete syndromic genetic obesity (obsolete MONDO:0016565)","termid":"MONDO:0016565"},{"relation_name":"excluded_subClassOf","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"},{"relation_name":"is_a","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01047":null},"genotype_count":0,"is_obsolete":false,"name":"Coffin-Lowry syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["NANDO:1200660","ICD9:759.89","NANDO:2200952","DOID:3783","OMIM:303600","GARD:6123","NCIT:C84643","NORD:983","icd11.foundation:380089065","SCTID:15182000","MESH:C536435","MESH:D038921","UMLS:C0265252","MEDGEN:75556"],"synonyms":[{"name":"CLS","type":"exact"},{"name":"COFFIN-Lowry syndrome","type":"related"},{"name":"Coffin Lowry Syndrome","type":"exact"},{"name":"Coffin syndrome","type":"related"},{"name":"Coffin syndrome 1","type":"related"},{"name":"Coffin-Lowry syndrome","type":"exact"},{"name":"Coffin-Lowry syndrome, X-linked dominant","type":"exact"},{"name":"dwarfism, lean spastic type","type":"related"},{"name":"intellectual disability with osteocartilaginous abnormalities","type":"related"},{"name":"lean spastic dwarfism","type":"related"},{"name":"mental retardation with osteocartilaginous abnormalities","type":"related"}],"termid":"MONDO:0010561","terms_by_termid":{"MONDO:0010561":null},"xrefs":{"Monarch":{"xref_id":"0010561"}}}


id: FYPO:0007363
data:
  {"alleles_by_uniquename":{"SJAG_02796:allele-1":{"allele_type":"amino_acid_mutation","description":"A343T","gene_uniquename":"SJAG_02796","name":"pyk1-A343T","uniquename":"SJAG_02796:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[119545],"is_not":false,"summary":null,"term":"FYPO:0007363"}]},"cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of pyruvate kinase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"},{"relation_name":"is_a","term_name":"abnormal metabolic process","termid":"FYPO:0000860"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02796":null},"genotype_count":1,"genotypes_by_uniquename":{"pyk1-A343T-A343T-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"pyk1-A343T(aa)","display_uniquename":"pyk1-A343T-A343T-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02796:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000652","FYPO:0000661","FYPO:0005447","FYPO:0000002","FYPO:0000654","FYPO:0000707"],"is_obsolete":false,"name":"abnormal pyruvate kinase activity","references_by_uniquename":{"PMID:37164017":null},"single_locus_annotated_genes":["SJAG_02796"],"single_locus_genotype_uniquenames":["pyk1-A343T-A343T-amino_acid_mutation-expression-not_assayed_or_wild_type"],"termid":"FYPO:0007363","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000126":null,"FYPO:0007363":null,"FYPO_EXT:0000002":null}}


id: PBO:0053622
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 664","termid":"PBO:0053622"}


id: GO:0036151
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Remodeling the acyl chains of phosphatidylcholine, through sequential deacylation and re-acylation reactions, to generate phosphatidylcholine containing different types of fatty acid acyl chains.","definition_xrefs":["PMID:18195019","PMID:18458083","GOC:mw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylcholine metabolic process","termid":"GO:0046470"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"phosphatidylcholine acyl-chain remodeling","secondary_identifiers":["Reactome:R-HSA-1482788"],"synonyms":[{"name":"phosphatidylcholine acyl-chain remodelling","type":"exact"}],"termid":"GO:0036151"}


id: PBO:0038518
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ABCF2-H2BK1 readthrough","termid":"PBO:0038518"}


id: GO:0006591
data:
  {"annotated_genes":["SJAG_00635","SJAG_03398","SJAG_00636","SJAG_00412","SJAG_00695","SJAG_01019","SJAG_00392","SJAG_01592","SJAG_01461","SJAG_04577"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[70838],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019547"},{"annotations":[98482,111389,110775,78826,102938,106834,112215,70571,118688],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042450"},{"annotations":[72541],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006592"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving ornithine, an amino acid only rarely found in proteins, but which is important in living organisms as an intermediate in the reactions of the urea cycle and in arginine biosynthesis.","definition_xrefs":["ISBN:0192801023","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-proteinogenic amino acid metabolic process","termid":"GO:0170041"},{"relation_name":"is_a","term_name":"alpha-amino acid metabolic process","termid":"GO:1901605"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00392":null,"SJAG_00412":null,"SJAG_00635":null,"SJAG_00636":null,"SJAG_00695":null,"SJAG_01019":null,"SJAG_01461":null,"SJAG_01592":null,"SJAG_03398":null,"SJAG_04577":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006520"],"is_obsolete":false,"name":"ornithine metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"ornithine metabolism","type":"exact"}],"termid":"GO:0006591","terms_by_termid":{"GO:0006592":null,"GO:0019547":null,"GO:0042450":null}}


id: PBO:0063195
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostate cancer associated transcript 14","termid":"PBO:0063195"}


id: PBO:0028316
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_wtf-derived_RNA_level","termid":"PBO:0028316"}


id: GO:0052822
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: DNA containing 3-methylguanine + H2O = DNA with abasic site + 3-methylguanine. This reaction is the hydrolysis of DNA by cleavage of the N-C1' glycosidic bond between the damaged DNA 3-methylguanine and the deoxyribose sugar to remove the 3-methylguanine, leaving an abasic site.","definition_xrefs":["PMID:10872450","PMID:9224623","GOC:elh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA-3-methylbase glycosylase activity","termid":"GO:0043733"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016798","GO:0140097","GO:0003674","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"DNA-3-methylguanine glycosylase activity","termid":"GO:0052822"}


id: PBO:0045697
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynein light chain Tctex-type 3 pseudogene 1","termid":"PBO:0045697"}


id: GO:0005931
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex found in the axoneme of eukaryotic cilia and flagella. It forms interconnections between the microtubule outer doublets that surround the inner central pair of microtubules.","definition_xrefs":["PMID:21728999","GOC:cilia","PMID:21586547","PMID:9295136","GOC:krc","PMID:22683354","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"axoneme","termid":"GO:0005930"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"axonemal nexin link","synonyms":[{"name":"axonemal interdoublet link","type":"exact"},{"name":"nexin complex","type":"broad"}],"termid":"GO:0005931"}


id: PBO:0084556
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Member of the SWI/SNF chromatin remodeling complex; has an as yet unidentified role in the complex; has identifiable counterparts in closely related yeast species; abundantly expressed in many growth conditions; paralog of Npl6p; relocates to the cytosol under hypoxic conditions","termid":"PBO:0084556"}


id: PBO:0079522
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TYRO3P protein tyrosine kinase pseudogene","termid":"PBO:0079522"}


id: MOD:00376
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-histidine residue and 5'-phosphoadenosine through a phosphoramide ester bond to form 1'-(phospho-5'-adenosine)-L-histidine.","definition_xrefs":["PubMed:15182206","RESID:AA0371","PubMed:9323207","Unimod:405#H"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-histidine residue","termid":"MOD:00909"},{"relation_name":"is_a","term_name":"adenylated residue","termid":"MOD:01165"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1'-(phospho-5'-adenosine)-L-histidine","synonyms":[{"name":"(2S)-2-amino-3-[1-(5'-adenosine phosphono)imidazol-4-yl]propanoic acid","type":"exact"},{"name":"1'-(phospho-5'-adenosine)-L-histidine","type":"exact"},{"name":"ACT_SITE Tele-AMP-histidine intermediate","type":"exact"},{"name":"AMP binding site","type":"related"},{"name":"L-histidine 5'-adenosine phosphoramidester","type":"exact"},{"name":"L-histidine monoanhydride with 5'-adenylic acid","type":"exact"},{"name":"N(tau)-5'-adenylic-L-histidine","type":"exact"},{"name":"N1'-adenylylated histidine","type":"exact"},{"name":"Phosphoadenosine","type":"related"},{"name":"tele-5'-adenylic-L-histidine","type":"exact"}],"termid":"MOD:00376"}


id: PBO:0070607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 75","termid":"PBO:0070607"}


id: GO:0035905
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the ascending aorta over time, from its initial formation to the mature structure. The ascending aorta is the portion of the aorta in a two-pass circulatory system that lies between the heart and the arch of aorta. In a two-pass circulatory system blood passes twice through the heart to supply the body once.","definition_xrefs":["GOC:bf","GOC:dgh","UBERON:0001496","MA:0002570","Wikipedia:Ascending_aorta"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"aorta development","termid":"GO:0035904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ascending aorta development","termid":"GO:0035905"}


id: MONDO:0007598
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"factors VIII, IX and XI, combined deficiency of","secondary_identifiers":["OMIM:134520","UMLS:C1851375","MEDGEN:341993","MESH:C565023"],"synonyms":[{"name":"factors VIII, 9 and Xi, combined deficiency of","type":"related"},{"name":"factors VIII, IX and XI, combined deficiency of","type":"exact"},{"name":"familial multiple coagulation Factor deficiency 5","type":"related"},{"name":"multiple coagulation Factor deficiency 5","type":"related"}],"termid":"MONDO:0007598","xrefs":{"Monarch":{"xref_id":"0007598"}}}


id: SO:0000692
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that encodes a dicistronic transcript.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gene_with_polycistronic_transcript","termid":"SO:0000690"},{"relation_name":"transcribed_to","term_name":"dicistronic_transcript","termid":"SO:0000079"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gene_with_dicistronic_transcript","synonyms":[{"name":"gene with dicistronic transcript","type":"exact"}],"termid":"SO:0000692"}


id: FYPO:0001942
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which a population in a culture remains in lag phase longer than normal. The onset of exponential growth is thus delayed.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell population phenotype","termid":"FYPO:0000003"},{"relation_name":"is_a","term_name":"abnormal phenotype","termid":"FYPO:0001985"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"increased duration of lag phase","synonyms":[{"name":"delayed exponential growth","type":"exact"},{"name":"prolonged lag phase","type":"exact"}],"termid":"FYPO:0001942"}


id: PBO:0046589
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group K member 31","termid":"PBO:0046589"}


id: GO:0140563
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalyzes the reaction: UDP-alpha-D-xylose + [protein with EGF-like domain]-3-O-(beta-D-glucosyl)-L-serine = UDP + [protein with EGF-like domain]-3-O-(alpha-D-xylosyl-(1->3)-beta-D-glucosyl)-L-serine.","definition_xrefs":["EC:2.4.2.42","PMID:30127001","RHEA:56064"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-xylosyltransferase activity","termid":"GO:0035252"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0016740","GO:0016757","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"UDP-D-xylose:beta-D-glucoside alpha-1,3-D-xylosyltransferase activity","termid":"GO:0140563"}


id: PBO:0062898
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oxoeicosanoid receptor 1","termid":"PBO:0062898"}


id: GO:0015883
data:
  {"annotated_genes":["SJAG_03503"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[107871],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990548"}]},"cv_name":"biological_process","definition":"The directed movement of flavin-adenine dinucleotide (FAD) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. FAD forms the coenzyme of the prosthetic group of various flavoprotein oxidoreductase enzymes, in which it functions as an electron acceptor by being reversibly converted to its reduced form.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide transport","termid":"GO:0006862"},{"relation_name":"is_a","term_name":"organic anion transport","termid":"GO:0015711"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03503":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"FAD transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"flavin adenine dinucleotide transport","type":"exact"},{"name":"flavin-adenine dinucleotide transport","type":"exact"}],"termid":"GO:0015883","terms_by_termid":{"GO:1990548":null}}


id: GO:0031172
data:
  {"annotated_genes":["SJAG_04032"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[94453],"is_not":false,"summary":null,"term":"GO:0031172"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-ornithine + O2 + H+ = N5-hydroxy-L-ornithine + H2O.","definition_xrefs":["PMID:12828635","MetaCyc:RXN-11128"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monooxygenase activity","termid":"GO:0004497"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04032":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"ornithine N5-monooxygenase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["RHEA:41508"],"synonyms":[{"name":"L-ornithine 5-monooxygenase activity","type":"exact"}],"termid":"GO:0031172","terms_by_termid":{"GO:0031172":null}}


id: PBO:0113804
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-protein ligase E3, phosphate quantity regulator Pqr1/Spx1","termid":"PBO:0113804"}


id: MOD:01881
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-phenylalanine residue and an L-valine residue by a free radical process effectively releasing a hydrogen molecule and forming 3-(L-phenylalan-2'-yl)-L-valine.","definition_xrefs":["PubMed:21596985","RESID:AA0565"],"direct_ancestors":[{"relation_name":"is_a","term_name":"uncategorized crosslinked residues","termid":"MOD:00692"},{"relation_name":"is_a","term_name":"crosslinked L-phenylalanine residue","termid":"MOD:02053"},{"relation_name":"is_a","term_name":"crosslinked L-valine residue","termid":"MOD:02059"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-(L-phenylalan-2'-yl)-L-valine","synonyms":[{"name":"(2S)-2-amino-4-(2-[(2S)-2-amino-2-carboxyethyl]phenyl)-3-methylbutanoic acid","type":"exact"},{"name":"3-(L-phenylalan-2'-yl)-L-valine","type":"exact"},{"name":"symerythrin valine-phenylalanine cross-link","type":"exact"}],"termid":"MOD:01881"}


id: GO:0034540
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 3-monobromobisphenol A + 2 H+ + 2 e- = bisphenol A + HBr.","definition_xrefs":["UM-BBD_reactionID:r0824"],"gene_count":0,"genotype_count":0,"name":"obsolete 3-monobromobisphenol A reductive dehalogenase activity (obsolete GO:0034540)","termid":"GO:0034540"}


id: PBO:0077545
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 255B","termid":"PBO:0077545"}


id: PBO:0054353
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1746","termid":"PBO:0054353"}


id: GO:0102072
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: NADP + a 3R-hydroxy cis Delta9-hexadecenoyl-[acp] = NADPH + H+ + a 3-oxo-cis-Delta9-hexadecenoyl-[acp].","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 3-oxo-cis-Delta9-hexadecenoyl-[acp] reductase activity (obsolete GO:0102072)","termid":"GO:0102072"}


id: GO:0010455
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates, maintains or increases the frequency or rate of cell fate commitment. Cell fate commitment is the commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell fate commitment","termid":"GO:0010453"},{"relation_name":"is_a","term_name":"positive regulation of cell differentiation","termid":"GO:0045597"},{"relation_name":"positively_regulates","term_name":"cell fate commitment","termid":"GO:0045165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cell fate commitment","termid":"GO:0010455"}


id: PBO:0004873
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptionally regulates spo12","termid":"PBO:0004873"}


id: PBO:0076280
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synaptonemal complex protein 3","termid":"PBO:0076280"}


id: PBO:0074089
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 26 member 5","termid":"PBO:0074089"}


id: MONDO:0003172
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hemangioma","termid":"MONDO:0006500"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glomeruloid hemangioma","secondary_identifiers":["UMLS:C1304511","DOID:486","MEDGEN:224917","NCIT:C27505","SCTID:403976007"],"termid":"MONDO:0003172","xrefs":{"Monarch":{"xref_id":"0003172"}}}


id: MONDO:0013893
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any multiple sclerosis, susceptibility to in which the cause of the disease is a mutation in the TNFRSF1A gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multiple sclerosis, susceptibility to","termid":"MONDO:0007462"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"multiple sclerosis, susceptibility to, 5","secondary_identifiers":["MEDGEN:766642","UMLS:C3553728","OMIM:614810"],"synonyms":[{"name":"MS5","type":"related"},{"name":"TNFRSF1A multiple sclerosis, susceptibility to","type":"exact"},{"name":"multiple sclerosis, susceptibility to caused by mutation in TNFRSF1A","type":"exact"},{"name":"multiple sclerosis, susceptibility to, 5","type":"exact"},{"name":"multiple sclerosis, susceptibility to, type 5","type":"exact"},{"name":"susceptibility to multiple sclerosis 5","type":"related"}],"termid":"MONDO:0013893","xrefs":{"Monarch":{"xref_id":"0013893"}}}


id: GO:0009740
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals mediated by the detection of gibberellic acid.","definition_xrefs":["GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gibberellin mediated signaling pathway","termid":"GO:0010476"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"gibberellic acid mediated signaling pathway","synonyms":[{"name":"GA-signaling","type":"exact"},{"name":"gibberellic acid mediated signalling","type":"exact"},{"name":"gibberellic acid signaling","type":"exact"}],"termid":"GO:0009740"}


id: GO:0070327
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of thyroid hormone into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hormone transport","termid":"GO:0009914"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"thyroid hormone transport","synonyms":[{"name":"thyroxine transport","type":"narrow"},{"name":"triiodothyronine transport","type":"narrow"}],"termid":"GO:0070327"}


id: _global:participates_in_a_biotic-biotic_interaction_with
data:
  {"annotation_feature_type":"gene","cv_name":"external","direct_ancestors":[{"relation_name":"is_a","term_name":"biotically_interacts_with","termid":"_global:biotically_interacts_with"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"participates_in_a_biotic-biotic_interaction_with","secondary_identifiers":["RO:0002574"],"termid":"_global:participates_in_a_biotic-biotic_interaction_with"}


id: PBO:0056248
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"male germ cell associated kinase","termid":"PBO:0056248"}


id: PBO:0043078
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cholinergic receptor nicotinic alpha 7 subunit","termid":"PBO:0043078"}


id: MONDO:0008013
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Monosomy 9p is a rare chromosomal anomaly characterized by psychomotor developmental delay, facial dysmorphism (trigonocephaly, midface hypoplasia, upslanting palpebral fissures, dysplastic small ears, flat nasal bridge with anteverted nostrils and long philtrum, micrognathia, choanal atresia, short neck), single umbilical artery, omphalocele, inguinal or umbilical hernia, genital abnormalities (hypospadia, cryptorchidism), muscular hypotonia and scoliosis.","definition_xrefs":["Orphanet:261112"],"direct_ancestors":[{"relation_name":"is_a","term_name":"partial deletion of chromosome 9","termid":"MONDO:0016874"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 9p deletion syndrome","secondary_identifiers":["GARD:3773","MESH:C538024","OMIM:158170","ICD9:758.39","SCTID:62599000","UMLS:C0795830","MEDGEN:167073","DOID:0060732"],"synonyms":[{"name":"9p deletion","type":"exact"},{"name":"9p deletion syndrome","type":"exact"},{"name":"9p monosomy","type":"exact"},{"name":"9p syndrome","type":"exact"},{"name":"9p- syndrome","type":"exact"},{"name":"Alfi syndrome","type":"exact"},{"name":"chromosome 9p deletion","type":"exact"},{"name":"deletion 9p","type":"exact"},{"name":"monosomy 9p","type":"exact"},{"name":"monosomy 9p syndrome","type":"exact"},{"name":"monosomy type 9p","type":"exact"},{"name":"partial deletion of chromosome 9p","type":"exact"},{"name":"partial deletion of the short arm of chromosome 9","type":"exact"},{"name":"partial deletion of the short arm of chromosome type 9","type":"exact"},{"name":"partial monosomy 9p","type":"exact"},{"name":"partial monosomy of chromosome 9p","type":"exact"},{"name":"partial monosomy of the short arm of chromosome 9","type":"exact"}],"termid":"MONDO:0008013","xrefs":{"Monarch":{"xref_id":"0008013"}}}


id: PBO:0067111
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 153, pseudogene","termid":"PBO:0067111"}


id: GO:0061541
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of a rhabdomere are generated and organized. The rhabdomere is the organelle on the apical surface of a photoreceptor cell that contains the visual pigments.","definition_xrefs":["GOC:dph","PMID:22113834"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron projection morphogenesis","termid":"GO:0048812"},{"relation_name":"part_of","term_name":"photoreceptor cell morphogenesis","termid":"GO:0008594"},{"relation_name":"part_of","term_name":"rhabdomere development","termid":"GO:0042052"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"rhabdomere morphogenesis","termid":"GO:0061541"}


id: PBO:0045223
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DnaJ heat shock protein family (Hsp40) member C11","termid":"PBO:0045223"}


id: SO:0002070
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A deletion of an Alu mobile element with respect to a reference.","definition_xrefs":["NCBI:th"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mobile_element_deletion","termid":"SO:0002066"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alu_deletion","termid":"SO:0002070"}


id: PBO:0078130
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha variable 12-1","termid":"PBO:0078130"}


id: PBO:0073987
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 25 member 1 pseudogene 1","termid":"PBO:0073987"}


id: PBO:0003253
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tip elongation aberrant protein Tea4","termid":"PBO:0003253"}


id: PBO:0067646
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 820, pseudogene","termid":"PBO:0067646"}


id: PBO:0029402
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_duration_of_protein_localization_to_cell_division_site","termid":"PBO:0029402"}


id: SO:0001186
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute describing the sequence of a transcript that has catalytic activity even without an associated ribonucleoprotein.","definition_xrefs":["RSC:cb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzymatic","termid":"SO:0001185"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribozymic","termid":"SO:0001186"}


id: GO:0001802
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An inflammatory response resulting from recognition of immune complexes via complement or Fc receptors on effector cells leading to activation of neutrophils and other leukocytes and damage to bystander tissue.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myeloid leukocyte mediated immunity","termid":"GO:0002444"},{"relation_name":"is_a","term_name":"hypersensitivity","termid":"GO:0002524"},{"relation_name":"is_a","term_name":"immunoglobulin mediated immune response","termid":"GO:0016064"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"type III hypersensitivity","secondary_identifiers":["Wikipedia:Type_III_hypersensitivity"],"termid":"GO:0001802"}


id: PBO:0027978
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_histone_H3-K4_dimethylation","termid":"PBO:0027978"}


id: GO:0070102
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by interleukin-6 binding to a receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:signaling","GOC:BHF","GOC:mah","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine-mediated signaling pathway","termid":"GO:0019221"},{"relation_name":"part_of","term_name":"cellular response to interleukin-6","termid":"GO:0071354"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"interleukin-6-mediated signaling pathway","secondary_identifiers":["Reactome:R-HSA-1059683"],"synonyms":[{"name":"IL-6-mediated signaling pathway","type":"related"},{"name":"interleukin-6-mediated signalling pathway","type":"exact"}],"termid":"GO:0070102"}


id: GO:0000165
data:
  {"annotated_genes":["SJAG_01114","SJAG_03893","SJAG_03969","SJAG_00845","SJAG_01978","SJAG_01885","SJAG_06621","SJAG_03185","SJAG_00027","SJAG_02233","SJAG_01787","SJAG_03453","SJAG_00781","SJAG_00117","SJAG_00993","SJAG_04825","SJAG_06592","SJAG_02013","SJAG_01718","SJAG_01587","SJAG_02592","SJAG_02183","SJAG_04522","SJAG_01345","SJAG_02135","SJAG_04503","SJAG_05000","SJAG_03340","SJAG_02878","SJAG_03263","SJAG_02342","SJAG_00424","SJAG_01199","SJAG_00975","SJAG_00990","SJAG_00610","SJAG_06622","SJAG_02923","SJAG_03828","SJAG_03625","SJAG_02392","SJAG_00318","SJAG_04777","SJAG_03384","SJAG_03903","SJAG_03705","SJAG_02000","SJAG_04551","SJAG_04666","SJAG_02945","SJAG_01181","SJAG_03753","SJAG_02486"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[57498,100293],"is_not":false,"summary":null,"term":"GO:0000165"},{"annotations":[102458,92604,111288],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000196"},{"annotations":[106594],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007254"},{"annotations":[96184,99763,104116,107361,107920,118617],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:1903138"},{"annotations":[88548],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0043409"},{"annotations":[95372,117379,99765,118618,92003,96304],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:1903753"},{"annotations":[107450],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0180040"},{"annotations":[94708,70467,102071,73493,106595,110652],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0038066"},{"annotations":[96712,97374,106596,89575,92528,93670],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071507"},{"annotations":[92759,89779,103157,88426,91108,118209],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1903139"},{"annotations":[109252,109250,95593,109248,112130,109251,112788,117672,109253,118584,109254,109249],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1900745"},{"annotations":[91189,114929,104018,88485,115890],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0062038"},{"annotations":[74962,80731],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0043408"}]},"cv_name":"biological_process","definition":"An intracellular protein kinase cascade containing at least a MAP kinase (MAPK). It starts with the activation of a MAP3K, and the consecutive activation of a MPK2K and a MAPK. The cascade can also contain an additional tier: the upstream MAP4K. The kinases in each tier phosphorylate and activate the kinase in the downstream tier to transmit a signal within a cell.","definition_xrefs":["PMID:20811974","PMID:9561267"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular signaling cassette","termid":"GO:0141124"}],"gene_count":53,"genes_by_uniquename":{"SJAG_00027":null,"SJAG_00117":null,"SJAG_00318":null,"SJAG_00424":null,"SJAG_00610":null,"SJAG_00781":null,"SJAG_00845":null,"SJAG_00975":null,"SJAG_00990":null,"SJAG_00993":null,"SJAG_01114":null,"SJAG_01181":null,"SJAG_01199":null,"SJAG_01345":null,"SJAG_01587":null,"SJAG_01718":null,"SJAG_01787":null,"SJAG_01885":null,"SJAG_01978":null,"SJAG_02000":null,"SJAG_02013":null,"SJAG_02135":null,"SJAG_02183":null,"SJAG_02233":null,"SJAG_02342":null,"SJAG_02392":null,"SJAG_02486":null,"SJAG_02592":null,"SJAG_02878":null,"SJAG_02923":null,"SJAG_02945":null,"SJAG_03185":null,"SJAG_03263":null,"SJAG_03340":null,"SJAG_03384":null,"SJAG_03453":null,"SJAG_03625":null,"SJAG_03705":null,"SJAG_03753":null,"SJAG_03828":null,"SJAG_03893":null,"SJAG_03903":null,"SJAG_03969":null,"SJAG_04503":null,"SJAG_04522":null,"SJAG_04551":null,"SJAG_04666":null,"SJAG_04777":null,"SJAG_04825":null,"SJAG_05000":null,"SJAG_06592":null,"SJAG_06621":null,"SJAG_06622":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"MAPK cascade","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"secondary_identifiers":["Wikipedia:MAPK_cascade","GO:0007255","Wikipedia:Mitogen-activated_protein_kinase","Reactome:R-HSA-169893","Reactome:R-HSA-5673001"],"synonyms":[{"name":"ERK/MAPK cascade","type":"narrow"},{"name":"MAP kinase cascade","type":"exact"},{"name":"MAP kinase kinase kinase cascade","type":"exact"},{"name":"MAPK signal transduction","type":"exact"},{"name":"MAPK signaling","type":"related"},{"name":"MAPK signalling","type":"related"},{"name":"MAPKKK cascade","type":"exact"},{"name":"MAPKKK cascade during sporulation","type":"narrow"},{"name":"mitogen-activated protein kinase cascade","type":"exact"}],"termid":"GO:0000165","terms_by_termid":{"GO:0000165":null,"GO:0000196":null,"GO:0007254":null,"GO:0038066":null,"GO:0043408":null,"GO:0043409":null,"GO:0062038":null,"GO:0071507":null,"GO:0180040":null,"GO:1900745":null,"GO:1903138":null,"GO:1903139":null,"GO:1903753":null}}


id: GO:0097015
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. All of the contents of a bacterial-type flagellum, excluding the plasma membrane surrounding the flagellum.","definition_xrefs":["GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete bacterial-type flagellar cytoplasm (obsolete GO:0097015)","synonyms":[{"name":"bacterial-type flagellum cytoplasm","type":"exact"}],"termid":"GO:0097015"}


id: PBO:0061232
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NOP9 nucleolar protein","termid":"PBO:0061232"}


id: PBO:0076734
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"t-complex 1 pseudogene 3","termid":"PBO:0076734"}


id: GO:1904843
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitroglycerin stimulus.","definition_xrefs":["PMID:25626975","GO_REF:0000071","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to nitrogen compound","termid":"GO:1901699"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"},{"relation_name":"is_a","term_name":"response to nitroglycerin","termid":"GO:1904842"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to nitroglycerin","synonyms":[{"name":"cellular response to nitroglycerine","type":"exact"},{"name":"cellular response to nitroglycerol","type":"exact"},{"name":"cellular response to trinitroglycerin","type":"exact"},{"name":"cellular response to trinitroglycerol","type":"exact"}],"termid":"GO:1904843"}


id: FYPO:0003808
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the movement of mitochondria is normal (i.e. indistinguishable from wild type). Mitochondria normally form tips that grow and shrink stochastically.","definition_xrefs":["PomBase:mah","PMID:19373772"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal mitochondrion","termid":"FYPO:0006034"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"normal mitochondrial motility","synonyms":[{"name":"normal mitochondrial dynamics","type":"exact"},{"name":"normal mitochondrial mobility","type":"exact"},{"name":"normal mitochondrial motility during mitotic cell cycle","type":"exact"},{"name":"normal mitochondrial motility during vegetative growth","type":"exact"},{"name":"normal nuclear membrane morphology","type":"narrow"}],"termid":"FYPO:0003808"}


id: PBO:0029162
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_phosphorylation_during_nitrogen_starvation","termid":"PBO:0029162"}


id: PBO:0039077
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AGPAT4 intronic transcript 1","termid":"PBO:0039077"}


id: PR:O13754
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A tetratricopeptide repeat protein 4 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01484"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hsp70/Hsp90 co-chaperone cns1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17A2.04c","secondary_identifiers":["UniProtKB:O13754"],"synonyms":[{"name":"Spom972h-TTC4","type":"exact"}],"termid":"PR:O13754"}


id: SO:0001350
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"4_thiouridine is a modified uridine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_uridine","termid":"SO:0001277"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"four_thiouridine","secondary_identifiers":["RNAMOD:058"],"synonyms":[{"name":"4-thiouridine","type":"exact"},{"name":"four thiouridine","type":"exact"},{"name":"s4U","type":"exact"}],"termid":"SO:0001350"}


id: GO:0003421
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The establishment, maintenance and elaboration of the columnar cartilage along the axis of a long bone that contributes to bone growth.","definition_xrefs":["GOC:dph","GOC:tb","GOC:ascb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"axis specification","termid":"GO:0009798"},{"relation_name":"part_of","term_name":"growth plate cartilage morphogenesis","termid":"GO:0003422"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"growth plate cartilage axis specification","synonyms":[{"name":"growth plate cartilage axis determination","type":"related"}],"termid":"GO:0003421"}


id: MONDO:0003448
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign epithelial neoplasm with eccrine or apocrine differentiation, arising from the sweat glands. It usually presents as a solitary, well circumscribed, firm nodule in the face and upper trunk. It is characterized by the presence of basaloid cells forming nodules in the dermis. Cases of carcinoma arising from long standing spiradenomas have been reported.","definition_xrefs":["NCIT:C4170"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"apocrine sweat gland neoplasm","termid":"MONDO:0003686"},{"relation_name":"is_a","term_name":"benign neoplasm of sweat gland","termid":"MONDO:0021489"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"benign spiradenoma","secondary_identifiers":["ICDO:8403/0","MEDGEN:90768","ONCOTREE:SPIR","SCTID:403938001","DOID:5444","UMLS:C0334347"],"synonyms":[{"name":"benign eccrine spiradenoma","type":"narrow"},{"name":"eccrine spiradenoma","type":"narrow"},{"name":"eccrine spiradenoma (morphologic abnormality)","type":"narrow"},{"name":"eccrine spiradenoma of skin","type":"narrow"},{"name":"spiradenoma","type":"exact"},{"name":"spiroma/spiradenoma","type":"related"}],"termid":"MONDO:0003448","xrefs":{"Monarch":{"xref_id":"0003448"}}}


id: PBO:0043268
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"claudin domain containing 1","termid":"PBO:0043268"}


id: PATO:0000095
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000095 absolute drug sensitivity (obsolete PATO:0000095)","termid":"PATO:0000095"}


id: MONDO:1011835
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system disorder, non-human animal","termid":"MONDO:1011336"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital cerebellar anomaly, non-human animal","secondary_identifiers":["OMIA:000176"],"termid":"MONDO:1011835","xrefs":{"Monarch":{"xref_id":"1011835"}}}


id: PBO:0072457
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S29 pseudogene 21","termid":"PBO:0072457"}


id: MONDO:0859525
data:
  {"annotated_genes":["SJAG_05330"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86931],"is_not":false,"summary":null,"term":"MONDO:0859525"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant nonsyndromic hearing loss","termid":"MONDO:0019587"}],"gene_count":1,"genes_by_uniquename":{"SJAG_05330":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019497"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0019497","MONDO:0000426"],"is_obsolete":false,"name":"hearing loss, autosomal dominant 87","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5830342","MEDGEN:1840978","OMIM:620281"],"termid":"MONDO:0859525","terms_by_termid":{"MONDO:0859525":null},"xrefs":{"Monarch":{"xref_id":"0859525"}}}


id: PBO:0076188
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO1 pseudogene 3","termid":"PBO:0076188"}


id: GO:1901572
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways involving chemical substance.","definition_xrefs":["GOC:TermGenie","GOC:pr"],"gene_count":0,"genotype_count":0,"name":"obsolete chemical substance metabolic process (obsolete GO:1901572)","synonyms":[{"name":"chemical substance metabolic process","type":"exact"},{"name":"chemical substance metabolism","type":"exact"}],"termid":"GO:1901572"}


id: PBO:0060389
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MZF1 antisense RNA 1","termid":"PBO:0060389"}


id: PR:Q9UTJ3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- meu1-1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UTJ3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic expression up-regulated protein 1/2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1556.06","synonyms":[{"name":"Spom972h-meu1-1","type":"exact"}],"termid":"PR:Q9UTJ3"}


id: PBO:0109837
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TTT co-chaperone complex, armadillo-type fold subunit Tti1","termid":"PBO:0109837"}


id: PR:Q1MTR1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC11C11.11c gene.","definition_xrefs":["UniProtKB:Q1MTR1","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ATP-dependent helicase irc3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC11C11.11c","synonyms":[{"name":"Spom972h-SPBC11C11.11c","type":"exact"}],"termid":"PR:Q1MTR1"}


id: GO:0007577
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. This process is a type of programmed cell death pathway similar to apoptosis and necrosis observed in multicellular organisms. It is characterized by cellular enlargement (necrosis) and presence of many autophagic bodies along with degradation of cellular components (nucleus, Golgi, ER), protein, DNA and RNA.","definition_xrefs":["GOC:sgd_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete autophagic death (sensu Saccharomyces) (obsolete GO:0007577)","synonyms":[{"name":"autophagic death (sensu Saccharomyces)","type":"exact"}],"termid":"GO:0007577"}


id: PBO:0062423
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily E member 84 pseudogene","termid":"PBO:0062423"}


id: GO:0102630
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 3',4',5,7-pentahydroxy-8-methoxyflavon-3-olate + S-adenosyl-L-methionine = gossypetin 3',8-dimethyl ether + S-adenosyl-L-homocysteine + H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete gossypetin 8-methyl ester 3'-O-methyltransferase activity (obsolete GO:0102630)","termid":"GO:0102630"}


id: PBO:0011960
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase allele types","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wild_type","termid":"PBO:0011960"}


id: GO:0070977
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A developmental process, independent of morphogenetic (shape) change, that is required for bone to attain its fully functional state.","definition_xrefs":["GOC:mah","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"animal organ maturation","termid":"GO:0048799"},{"relation_name":"part_of","term_name":"bone development","termid":"GO:0060348"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"bone maturation","termid":"GO:0070977"}


id: PBO:0002555
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ypt/Rab-specific guanyl-nucleotide exchange factor (GEF) subunit Ric1","termid":"PBO:0002555"}


id: PBO:0001816
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-glucosidase Agl1","termid":"PBO:0001816"}


id: GO:0060702
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of the catalysis of the hydrolysis of ester linkages within ribonucleic acid by creating internal breaks.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of nuclease activity","termid":"GO:0032074"},{"relation_name":"is_a","term_name":"regulation of endoribonuclease activity","termid":"GO:0060699"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of endoribonuclease activity","termid":"GO:0060702"}


id: MONDO:0024635
data:
  {"annotated_genes":["SJAG_03920","SJAG_00260"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87158,87159],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011719"}]},"cv_name":"mondo","definition":"A disease that involves the small intestine.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intestinal disorder","termid":"MONDO:0005020"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00260":null,"SJAG_03920":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"small intestine disorder","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C0341268","MEDGEN:574283","SCTID:119522002"],"synonyms":[{"name":"disease of small intestine","type":"exact"},{"name":"disease or disorder of small intestine","type":"exact"},{"name":"disorder of small intestine","type":"exact"},{"name":"small intestine disease or disorder","type":"exact"}],"termid":"MONDO:0024635","terms_by_termid":{"MONDO:0011719":null},"xrefs":{"Monarch":{"xref_id":"0024635"}}}


id: PBO:0071705
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L39 pseudogene 3","termid":"PBO:0071705"}


id: MONDO:0015190
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete leiomyosarcoma of small intestine (obsolete MONDO:0015190)","termid":"MONDO:0015190","xrefs":{"Monarch":{"xref_id":"0015190"}}}


id: MONDO:0007466
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA, satellite, 3","secondary_identifiers":["OMIM:126370"],"synonyms":[{"name":"D1Z1","type":"related"},{"name":"DNA, satellite, III","type":"related"},{"name":"DNA, satellite, type 3","type":"exact"},{"name":"HS3","type":"related"}],"termid":"MONDO:0007466","xrefs":{"Monarch":{"xref_id":"0007466"}}}


id: MOD:00212
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to S-4-hydroxycinnamyl-L-cysteine.","definition_xrefs":["PubMed:7947803","Unimod:407","PubMed:7981196","RESID:AA0207"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"S-4-hydroxycinnamyl-L-cysteine","synonyms":[{"name":"(2R)-2-amino-3-([(2E)-3-(4-hydroxyphenyl)prop-2-enoyl]sulfanyl)propanoic acid","type":"exact"},{"name":"Hydroxycinnamyl","type":"related"},{"name":"MOD_RES S-(4-hydroxycinnamyl)cysteine","type":"exact"},{"name":"S-4-hydroxycinnamyl-L-cysteine","type":"exact"},{"name":"S-para-coumaryl-L-cysteine","type":"exact"},{"name":"cinnamate cysteine thioester","type":"exact"},{"name":"hydroxycinnamyl","type":"related"}],"termid":"MOD:00212"}


id: GO:0035522
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The removal of the ubiquitin group from a monoubiquitinated histone H2A protein.","definition_xrefs":["PMID:20436459","GOC:bf","PMID:18226187"],"gene_count":0,"genotype_count":0,"name":"obsolete monoubiquitinated histone H2A deubiquitination (obsolete GO:0035522)","synonyms":[{"name":"monoubiquitinated histone H2A deubiquitinylation","type":"exact"},{"name":"monoubiquitinated histone H2A deubiquitylation","type":"exact"}],"termid":"GO:0035522"}


id: PR:Q9USW9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sgf29 gene.","definition_xrefs":["UniProtKB:Q9USW9","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SAGA-associated factor 29 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1921.07c","synonyms":[{"name":"Spom972h-sgf29","type":"exact"}],"termid":"PR:Q9USW9"}


id: PATO:0001929
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A variability quality inhering in a bearer by virtue of whether the bearer exhibits shape variation or change.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"variability","termid":"PATO:0001303"},{"relation_name":"towards","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"variability of shape","termid":"PATO:0001929"}


id: PBO:0064794
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PPM1L divergent transcript","termid":"PBO:0064794"}


id: PBO:0029532
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_localization_to_septum","termid":"PBO:0029532"}


id: PBO:0027454
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_triphosphatase_activity","termid":"PBO:0027454"}


id: PBO:0041537
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 17 open reading frame 75","termid":"PBO:0041537"}


id: GO:0005283
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: amino acid(out) + Na+(out) = amino acid(in) + Na+(in).","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid:monoatomic cation symporter activity","termid":"GO:0005416"},{"relation_name":"is_a","term_name":"solute:sodium symporter activity","termid":"GO:0015370"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"amino acid:sodium symporter activity","secondary_identifiers":["GO:0005284","GO:0005285"],"synonyms":[{"name":"glutamate/aspartate:sodium symporter activity","type":"narrow"},{"name":"insulin-activated sodium/amino acid transporter activity","type":"narrow"},{"name":"insulin-activated sodium:amino acid symporter activity","type":"narrow"},{"name":"insulin-activated sodium:amino acid transporter activity","type":"narrow"},{"name":"isoleucine/valine:sodium symporter activity","type":"narrow"},{"name":"sodium/amino acid transporter activity","type":"broad"},{"name":"sodium/excitatory amino acid cotransporter activity","type":"broad"},{"name":"sodium/excitatory amino acid symporter activity","type":"exact"},{"name":"sodium:amino acid symporter activity","type":"exact"},{"name":"sodium:amino acid transporter activity","type":"broad"},{"name":"threonine/serine:sodium symporter activity","type":"narrow"}],"termid":"GO:0005283"}


id: PBO:0090796
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER flavin-containing N,N-dimethylaniline monooxygenase activity Fmo1","termid":"PBO:0090796"}


id: PBO:0058751
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6875","termid":"PBO:0058751"}


id: PBO:0081215
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger matrin-type 5","termid":"PBO:0081215"}


id: GO:0033486
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of delphinidin 3-O-glucoside, a basic, water-soluble anthocyanin responsible for blue coloration of flowers and fruits.","definition_xrefs":["GOC:mah","MetaCyc:PWY-5153"],"direct_ancestors":[{"relation_name":"is_a","term_name":"flavonoid biosynthetic process","termid":"GO:0009813"},{"relation_name":"is_a","term_name":"beta-glucoside biosynthetic process","termid":"GO:1901806"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"delphinidin 3-O-glucoside biosynthetic process","synonyms":[{"name":"delphinidin 3-O-glucoside anabolism","type":"exact"},{"name":"delphinidin 3-O-glucoside biosynthesis","type":"exact"},{"name":"delphinidin 3-O-glucoside formation","type":"exact"},{"name":"delphinidin 3-O-glucoside synthesis","type":"exact"}],"termid":"GO:0033486"}


id: GO:0015267
data:
  {"annotated_genes":["SJAG_05204","SJAG_01090","SJAG_00836","SJAG_04136","SJAG_04471","SJAG_02877","SJAG_MIT09","SJAG_01168","SJAG_04731","SJAG_00985","SJAG_02564","SJAG_00048","SJAG_MIT15","SJAG_MIT37","SJAG_04668","SJAG_02532","SJAG_02105","SJAG_00915","SJAG_07003","SJAG_00438","SJAG_05342","SJAG_02598","SJAG_05229","SJAG_02019","SJAG_02322","SJAG_04122","SJAG_03895","SJAG_00133","SJAG_03114","SJAG_03925","SJAG_00542"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[70186,75727],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008519"},{"annotations":[72693,114742,77592],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005262"},{"annotations":[80187,73394],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005227"},{"annotations":[70761],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005254"},{"annotations":[99953],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008331"},{"annotations":[104082],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140135"},{"annotations":[96018],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008381"},{"annotations":[57851,102135,119363,70256,75913,108212,78181,119376,95183,70411,94212,93629,78387,108120,119369,79566,73132],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046933"},{"annotations":[92748,92690,114231,99954],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015275"},{"annotations":[72013],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008308"}]},"cv_name":"molecular_function","definition":"Enables the energy-independent facilitated diffusion of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"passive transmembrane transporter activity","termid":"GO:0022803"}],"gene_count":31,"genes_by_uniquename":{"SJAG_00048":null,"SJAG_00133":null,"SJAG_00438":null,"SJAG_00542":null,"SJAG_00836":null,"SJAG_00915":null,"SJAG_00985":null,"SJAG_01090":null,"SJAG_01168":null,"SJAG_02019":null,"SJAG_02105":null,"SJAG_02322":null,"SJAG_02532":null,"SJAG_02564":null,"SJAG_02598":null,"SJAG_02877":null,"SJAG_03114":null,"SJAG_03895":null,"SJAG_03925":null,"SJAG_04122":null,"SJAG_04136":null,"SJAG_04471":null,"SJAG_04668":null,"SJAG_04731":null,"SJAG_05204":null,"SJAG_05229":null,"SJAG_05342":null,"SJAG_07003":null,"SJAG_MIT09":null,"SJAG_MIT15":null,"SJAG_MIT37":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"channel activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0015268","Reactome:R-HSA-8953430","TC:1","Reactome:R-HSA-3779381","GO:0022838","GO:0015249"],"synonyms":[{"name":"alpha-type channel activity","type":"related"},{"name":"channel-forming toxin activity","type":"related"},{"name":"channel/pore class transporter activity","type":"exact"},{"name":"nonselective channel activity","type":"exact"},{"name":"pore activity","type":"broad"},{"name":"pore class transporter activity","type":"related"},{"name":"substrate-specific channel activity","type":"related"}],"termid":"GO:0015267","terms_by_termid":{"GO:0005227":null,"GO:0005254":null,"GO:0005262":null,"GO:0008308":null,"GO:0008331":null,"GO:0008381":null,"GO:0008519":null,"GO:0015275":null,"GO:0046933":null,"GO:0140135":null}}


id: PBO:0089505
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA adenine glycosylase Myh1","termid":"PBO:0089505"}


id: PBO:0004512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-1-tetrahydrofolatesynthase/methylenetetrahydrofolatedehydrogenase/methylenetetrahydrofolatecyclohydrolase/ formyltetrahydrofolatesynthetase (predicted)","termid":"PBO:0004512"}


id: MONDO:0006528
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A bacteria-induced exanthem","definition_xrefs":["EFO:1000671"],"direct_ancestors":[{"relation_name":"is_a","term_name":"exanthem","termid":"MONDO:0006547"},{"relation_name":"is_a","term_name":"skin disease caused by bacterial infection","termid":"MONDO:0024295"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"bacterial exanthem","secondary_identifiers":["DOID:0050487"],"termid":"MONDO:0006528","xrefs":{"Monarch":{"xref_id":"0006528"}}}


id: SO:0002277
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Crypton is a superfamily of DNA transposons that use tyrosine recombinase (YR) to cut and rejoin the recombining DNA molecules.","definition_xrefs":["PMID:22011512"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA_transposon","termid":"SO:0000182"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Crypton_YR_transposon","synonyms":[{"name":"Crypton YR transposon","type":"exact"},{"name":"Crypton transposon","type":"exact"},{"name":"DYC transposon","type":"exact"}],"termid":"SO:0002277"}


id: GO:0008584
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gonad development","termid":"GO:0008406"},{"relation_name":"part_of","term_name":"development of primary male sexual characteristics","termid":"GO:0046546"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"male gonad development","secondary_identifiers":["Reactome:R-HSA-9690406"],"synonyms":[{"name":"testicular development","type":"exact"},{"name":"testis development","type":"exact"}],"termid":"GO:0008584"}


id: GO:1902463
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within a cell leading edge.","definition_xrefs":["GOC:lb","GOC:TermGenie","PMID:21543326"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization","termid":"GO:0008104"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"protein localization to cell leading edge","synonyms":[{"name":"protein localisation in cell leading edge","type":"exact"},{"name":"protein localisation to cell leading edge","type":"exact"},{"name":"protein localization in cell leading edge","type":"exact"}],"termid":"GO:1902463"}


id: MOD:01789
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an N-terminal L-phenylalanine residue to phenylalanine immonium ion.","definition_xrefs":["PubMed:18688235","PubMed:17074506"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-phenylalanine residue","termid":"MOD:00914"},{"relation_name":"is_a","term_name":"residue reporter fragment","termid":"MOD:01527"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phenylalanine immonium ion","synonyms":[{"name":"2-phenylethaniminium","type":"exact"}],"termid":"MOD:01789"}


id: MOD:01013
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DeltaMass","termid":"MOD:00947"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetramethylguanidinium termination by-product on amine","termid":"MOD:01013"}


id: GO:0060549
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the rate, frequency or extent of fructose 1,6-bisphosphate 1-phosphatase activity. Fructose 1,6-bisphosphate 1-phosphatase activity is the catalysis of the reaction: D-fructose 1,6-bisphosphate + H2O = D-fructose 6-phosphate + phosphate.","definition_xrefs":["GOC:tb","GOC:BHF","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of fructose 1,6-bisphosphate 1-phosphatase activity (obsolete GO:0060549)","termid":"GO:0060549"}


id: MONDO:0016702
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A WHO grade II tumor composed of a conspicuous mixture of two distinct neoplastic cell types morphologically resembling the tumor cells in oligodendroglioma and diffuse astrocytoma. (WHO)","definition_xrefs":["NCIT:C4050"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mixed glioma","termid":"MONDO:0003268"},{"relation_name":"is_a","term_name":"grade II glioma","termid":"MONDO:0021639"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oligoastrocytoma","secondary_identifiers":["ONCOTREE:OAST","Orphanet:251656","EFO:0000630","DOID:7912","MEDGEN:154285","UMLS:C0547065","GARD:9769","MESH:D009837","SCTID:716647001","MedDRA:10027744"],"synonyms":[{"name":"MOA","type":"exact"},{"name":"WHO grade II mixed glioma","type":"exact"},{"name":"glioma, mixed, benign","type":"exact"},{"name":"mixed astrocytic-oligodendroglial neoplasm","type":"exact"},{"name":"mixed astrocytic-oligodendroglial tumor","type":"exact"},{"name":"mixed astrocytic-oligodendroglial tumour","type":"exact"},{"name":"mixed astrocytoma-oligodendroglioma","type":"exact"},{"name":"mixed oligo-astrocytoma","type":"exact"},{"name":"mixed oligoastrocytoma","type":"exact"},{"name":"mixed oligodendroglioma-astrocytoma","type":"exact"},{"name":"oligoastrocytoma","type":"exact"}],"termid":"MONDO:0016702","xrefs":{"Monarch":{"xref_id":"0016702"}}}


id: PBO:0089876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UNC-50 family protein, implicated in vesicle-mediated transport","termid":"PBO:0089876"}


id: PBO:0000016
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-target_is","termid":"PBO:0000016"}


id: MONDO:0006924
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Infections with bacteria of the family bartonellaceae.","definition_xrefs":["MESH:D001476"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gram-negative bacterial infections","termid":"MONDO:0021678"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Bartonellaceae infectious disease","secondary_identifiers":["MEDGEN:2171","UMLS:C0004773"],"synonyms":[{"name":"Bartonellaceae caused disease or disorder","type":"exact"},{"name":"Bartonellaceae disease or disorder","type":"exact"},{"name":"Bartonellaceae infection","type":"related"},{"name":"infection, Bartonellaceae","type":"related"},{"name":"infections, Bartonellaceae","type":"related"}],"termid":"MONDO:0006924","xrefs":{"Monarch":{"xref_id":"0006924"}}}


id: GO:0000709
data:
  {"annotated_genes":["SJAG_00623","SJAG_01708","SJAG_01044","SJAG_04950","SJAG_03221","SJAG_02267","SJAG_02708","SJAG_03751"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[79263,88823,97248,100869,101838,107973,110613,117403],"is_not":false,"summary":null,"term":"GO:0000709"}]},"cv_name":"biological_process","definition":"The conversion of the paired broken DNA and homologous duplex DNA into a four-stranded branched intermediate, known as a joint molecule, formed during meiotic recombination. These joint molecules contain Holliday junctions on either side of heteroduplex DNA.","definition_xrefs":["GOC:elh","PMID:8521495"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiotic cell cycle process","termid":"GO:1903046"},{"relation_name":"part_of","term_name":"reciprocal meiotic recombination","termid":"GO:0007131"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00623":null,"SJAG_01044":null,"SJAG_01708":null,"SJAG_02267":null,"SJAG_02708":null,"SJAG_03221":null,"SJAG_03751":null,"SJAG_04950":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0140013"},{"rel_name":"part_of","termid":"GO:0006310"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0006310","GO:0006259","GO:0008150","GO:0140013"],"is_obsolete":false,"name":"meiotic joint molecule formation","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0000709","terms_by_termid":{"GO:0000709":null}}


id: GO:0140733
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and increases the activity of a tRNA ligase.","definition_xrefs":["PMID:30943413"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme activator activity","termid":"GO:0008047"},{"relation_name":"is_a","term_name":"ligase regulator activity","termid":"GO:0055103"},{"relation_name":"positively_regulates","term_name":"aminoacyl-tRNA ligase activity","termid":"GO:0004812"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"regulates","termid":"GO:0016874"},{"rel_name":"positively_regulates","termid":"GO:0140101"},{"rel_name":"regulates","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"regulates","termid":"GO:0140098"},{"rel_name":"positively_regulates","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"positively_regulates","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"positively_regulates","termid":"GO:0140098"},{"rel_name":"regulates","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0140101","GO:0098772","GO:0030234","GO:0140677","GO:0003674","GO:0003824","GO:0016874","GO:0140098"],"is_obsolete":false,"name":"tRNA ligase activator activity","termid":"GO:0140733"}


id: MONDO:0859148
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with seizures and gingival overgrowth","secondary_identifiers":["MEDGEN:1784299","OMIM:619323","UMLS:C5543395"],"termid":"MONDO:0859148","xrefs":{"Monarch":{"xref_id":"0859148"}}}


id: GO:0021554
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the optic nerve over time, from its formation to the mature structure. The sensory optic nerve originates from the bipolar cells of the retina and conducts visual information to the brainstem. The optic nerve exits the back of the eye in the orbit, enters the optic canal, and enters the central nervous system at the optic chiasm (crossing) where the nerve fibers become the optic tract just prior to entering the hindbrain.","definition_xrefs":["GOC:cls","GOC:jid","GOC:dgh","ISBN:0838580343","GO_REF:0000021","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cranial nerve development","termid":"GO:0021545"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"optic nerve development","synonyms":[{"name":"CN II development","type":"related"},{"name":"cranial nerve 2 development","type":"exact"},{"name":"cranial nerve II development","type":"exact"}],"termid":"GO:0021554"}


id: GO:0103033
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: alpha-lactose = beta-(1->6)-galactobiose.","definition_xrefs":["EC:5.4.1.-","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular acyltransferase activity","termid":"GO:0016867"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0003674","GO:0016853","GO:0003824"],"is_obsolete":false,"name":"beta-galactosidase activity (lactose isomerization)","secondary_identifiers":["MetaCyc:RXN0-5363"],"termid":"GO:0103033"}


id: GO:0097408
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Cellular inclusion consisting of circular areas filled with fine slender filaments about 10 nanometers in diameter, delimited by a wall of varying complexity (either a single continuous membrane or a tubular network consisting of a fine filamentous material giving the wall a honeycomb appearance). Fibrillary inclusions are found in the cytoplasm of giant cells of Dieters in the lateral vestibular nucleus of the rat; similar structures have been described in the ventral cochlear nucleus, spinal cord, and substantia nigra.","definition_xrefs":["NIF_Subcellular:sao967812059"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inclusion body","termid":"GO:0016234"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"fibrillary inclusion","termid":"GO:0097408"}


id: MONDO:0020540
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare neoplasm arising from the ovary. Although it may occur at any age, it is more often seen in young females. Morphologically, it is characterized by a mixture of two cellular populations: well differentiated Sertoli cells and granulosa cells, with the latter constituting at least ten percent of the neoplasm. The vast majority of cases are stage I lesions at presentation and produce either estrogenic or androgenic manifestations. Although it may present as a massive ovarian tumor, it usually follows a benign clinical course. Very rare case reports of testicular lesions morphologically resembling gynandroblastomas are in fact variants of juvenile granulose cell tumor, or Sertoli cell tumor, or a combination of both.","definition_xrefs":["NCIT:C3072"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"malignant sex cord stromal tumor of ovary","termid":"MONDO:0018172"},{"relation_name":"is_a","term_name":"ovarian sex cord-stromal tumor","termid":"MONDO:0021657"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ovarian gynandroblastoma","secondary_identifiers":["MESH:C538459","Orphanet:99914","SCTID:254867003","UMLS:C0346178","ICDO:8632/1","GARD:9665","MEDGEN:83412"],"synonyms":[{"name":"Gynandroblastoma","type":"related"},{"name":"Gynandroblastoma of ovary","type":"exact"},{"name":"Gynandroblastoma of the ovary","type":"exact"}],"termid":"MONDO:0020540","xrefs":{"Monarch":{"xref_id":"0020540"}}}


id: PBO:0073238
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"selenophosphate synthetase 1 pseudogene 2","termid":"PBO:0073238"}


id: PBO:0058745
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6869","termid":"PBO:0058745"}


id: PBO:0089827
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial heat shock protein Hsp78","termid":"PBO:0089827"}


id: PBO:0035777
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_mitotic_spindle_pole_body_oscillation","termid":"PBO:0035777"}


id: PBO:0078060
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha joining 50","termid":"PBO:0078060"}


id: PBO:0061105
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NLR family CARD domain containing 3","termid":"PBO:0061105"}


id: MONDO:0019915
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Maternal uniparental disomy of chromosome 14 is a rare chromosomal anomaly characterized by prenatal and postnatal growth retardation, hypotonia, motor delay, early puberty, obesity, short adult stature, small hands and feet, mild intellectual disability, and mild dysmorphic facial features (frontal bossing, short nose with wide nasal tip, micrognathia, high palate, short philtrum).","definition_xrefs":["Orphanet:96184"],"direct_ancestors":[{"relation_name":"is_a","term_name":"motor developmental delay due to 14q32.2 paternally expressed gene defect","termid":"MONDO:0014541"},{"relation_name":"is_a","term_name":"chromosome 14 disorder","termid":"MONDO:0700021"},{"relation_name":"is_a","term_name":"uniparental disomy","termid":"MONDO:0700086"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"maternal uniparental disomy of chromosome 14","secondary_identifiers":["MEDGEN:1841563","UMLS:C5680248","GARD:16848","icd11.foundation:171193570"],"synonyms":[{"name":"UPD(14)mat","type":"exact"},{"name":"maternal uniparental disomy of chromosome type 14","type":"exact"}],"termid":"MONDO:0019915","xrefs":{"Monarch":{"xref_id":"0019915"}}}


id: PBO:0059211
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial rRNA methyltransferase 3","termid":"PBO:0059211"}


id: GO:0070179
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of D-serine, the D-enantiomer of serine, i.e. (2R)-2-amino-3-hydroxypropanoic acid. D-serine is often formed by racemization of L-serine.","definition_xrefs":["CHEBI:16523","GOC:jsg","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"D-amino acid biosynthetic process","termid":"GO:0046437"},{"relation_name":"is_a","term_name":"D-serine metabolic process","termid":"GO:0070178"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"D-serine biosynthetic process","synonyms":[{"name":"D-serine anabolism","type":"exact"},{"name":"D-serine biosynthesis","type":"exact"},{"name":"D-serine formation","type":"exact"},{"name":"D-serine synthesis","type":"exact"}],"termid":"GO:0070179"}


id: MONDO:0030915
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An autosomal recessive non-syndromic intellectual disability that has material basis in an autosomal recessive mutation of the RUSC2 gene on chromosome 9p13.","definition_xrefs":["DOID:0080239"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive non-syndromic intellectual disability","termid":"MONDO:0019502"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0037792"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0005066","MONDO:0037792"],"is_obsolete":false,"name":"intellectual disability, autosomal recessive 61","secondary_identifiers":["OMIM:617773","UMLS:C4540424","MEDGEN:1622296"],"synonyms":[{"name":"Alwadei syndrome","type":"related"},{"name":"MRT61","type":"related"},{"name":"autosomal recessive intellectual disability 61","type":"related"},{"name":"autosomal recessive mental retardation 61","type":"related"},{"name":"intellectual disability, autosomal recessive 61","type":"exact"},{"name":"mental retardation, autosomal recessive 61","type":"related"}],"termid":"MONDO:0030915","xrefs":{"Monarch":{"xref_id":"0030915"}}}


id: MONDO:0017292
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Well-differentiated fetal adenocarcinoma (WDFA) of the lung is a rare, primary, low-grade, bronchopulmonary neoplasm characterized by a well-circumscribed, usually large, pulmonary mass that is histologically composed of glycogen-rich neoplastic glands and tubules that resemble fetal lungs at 10 to 16 weeks of gestation and benign adjacent stroma. It typically presents with chest pain, cough, dyspnea, hemoptysis and/or generalized, non-specific symptoms, such as night sweats, lethargy, poor appetite and weight loss.","definition_xrefs":["Orphanet:284395"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lung adenocarcinoma","termid":"MONDO:0005061"},{"relation_name":"is_a","term_name":"tubular adenocarcinoma","termid":"MONDO:0005606"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"well-differentiated fetal adenocarcinoma of the lung","secondary_identifiers":["ICDO:8333/3","GARD:21120","MEDGEN:843585","UMLS:C3873372","NCIT:C45509"],"synonyms":[{"name":"WDFA","type":"exact"},{"name":"fetal adenocarcinoma","type":"exact"},{"name":"fetal lung adenocarcinoma","type":"exact"},{"name":"foetal adenocarcinoma","type":"exact"},{"name":"foetal lung adenocarcinoma","type":"exact"},{"name":"pulmonary adenocarcinoma of fetal type","type":"exact"},{"name":"pulmonary adenocarcinoma of foetal type","type":"exact"},{"name":"pulmonary endodermal tumor resembling fetal lung","type":"exact"},{"name":"pulmonary endodermal tumour resembling foetal lung","type":"exact"},{"name":"well-differentiated fetal lung adenocarcinoma","type":"exact"},{"name":"well-differentiated foetal lung adenocarcinoma","type":"exact"}],"termid":"MONDO:0017292","xrefs":{"Monarch":{"xref_id":"0017292"}}}


id: SO:0002287
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Dictyostelium intermediate repeat sequence (DIRS) retrotransposons are members of the YR_retrotransposon (SO:0002286) superfamily with the following protein domains: RT, RH, YR, and MT. RT is a reverse transcriptase. RH is RNAse H. YR is tyrosine recombinase. MT is DNA N-6-adenine-methyltransferase.","definition_xrefs":["PMID:24086727"],"direct_ancestors":[{"relation_name":"is_a","term_name":"YR_retrotransposon","termid":"SO:0002286"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DIRS_YR_retrotransposon","synonyms":[{"name":"DIRS YR retrotransposon","type":"exact"},{"name":"DIRS retrotransposon","type":"exact"},{"name":"RYD retrotransposon","type":"exact"}],"termid":"SO:0002287"}


id: PBO:0074406
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small integral membrane protein 11","termid":"PBO:0074406"}


id: PBO:0049950
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HIF1A antisense RNA 3","termid":"PBO:0049950"}


id: MONDO:0007412
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A severe form of syndromic craniosynostosis, characterized by a variable degree of craniosynostosis, with cloverleaf skull reported in over 50% of cases, cutis gyrata, corduroy-like linear striations in the skin, acanthosis nigricans, skin tags, and choanal stenosis or atresia. Additional features include facial features similar to Crouzon disease, ear defects (conductive hearing loss, posteriorly angulated ears, stenotic auditory canals, preauricular furrows, and narrow ear canals), hirsutism, a prominent umbilical stump, and genitorurinary anomalies (anteriorly placed anus, hypoplasic labia, hypospadias). BSS is associated with a poor outcome as patients present an elevated risk for sudden death in their first year of life. Significant developmental delay and intellectual disability are observed in most patients who survive infancy.","definition_xrefs":["Orphanet:1555"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"skin disorder","termid":"MONDO:0005093"},{"relation_name":"excluded_subClassOf","term_name":"dermis disorder","termid":"MONDO:0021154"},{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome without intellectual disability","termid":"MONDO:0015161"},{"relation_name":"is_a","term_name":"syndromic craniosynostosis","termid":"MONDO:0015338"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497","MONDO:0000426"],"is_obsolete":false,"name":"Beare-Stevenson cutis gyrata syndrome","secondary_identifiers":["UMLS:C1852406","MEDGEN:377668","MESH:C565129","ICD9:759.89","icd11.foundation:947865461","NCIT:C123813","DOID:0050660","GARD:332","OMIM:123790","SCTID:703528008"],"synonyms":[{"name":"BSTVS","type":"related"},{"name":"Beare Stevenson syndrome","type":"related"},{"name":"Beare-Stevenson cutis gyrata syndrome","type":"exact"},{"name":"Beare-Stevenson syndrome","type":"related"},{"name":"cutis gyrata - acanthosis nigricans - craniosynostosis","type":"related"},{"name":"cutis gyrata syndrome of Beare and Stevenson","type":"related"},{"name":"cutis gyrata-acanthosis nigricans-craniosynostosis syndrome","type":"related"}],"termid":"MONDO:0007412","xrefs":{"Monarch":{"xref_id":"0007412"}}}


id: PBO:0080367
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vanin 1","termid":"PBO:0080367"}


id: PBO:0058573
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6511b-1","termid":"PBO:0058573"}


id: PBO:0051565
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 12 receptor subunit beta 2","termid":"PBO:0051565"}


id: SO:1001195
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that is alternately spliced, and encodes more than one polypeptide, that have overlapping peptide sequences.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"encodes_greater_than_1_polypeptide","termid":"SO:1001189"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"encodes_overlapping_peptides","synonyms":[{"name":"encodes overlapping peptides","type":"exact"}],"termid":"SO:1001195"}


id: MONDO:0010482
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"X-linked parkinsonism-spasticity syndrome is a rare genetic neurological disorder characterized by parkinsonian features (including resting or action tremor, cogwheel rigidity, hypomimia and bradykinesia) associated with variably penetrant spasticity, hyperactive deep tendon reflexes and Babinski sign.","definition_xrefs":["Orphanet:363654"],"direct_ancestors":[{"relation_name":"is_a","term_name":"parkinsonian disorder","termid":"MONDO:0021095"},{"relation_name":"is_a","term_name":"ATP6AP2-related disorder","termid":"MONDO:0100146"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"X-linked parkinsonism-spasticity syndrome","secondary_identifiers":["UMLS:C3806722","DOID:0112105","OMIM:300911","GARD:17567","MEDGEN:813052"],"synonyms":[{"name":"PARKINSONISM with spasticity, X-linked","type":"related"},{"name":"Parkinsonism with spasticity, X-linked, X-linked recessive","type":"exact"},{"name":"XPDS","type":"exact"}],"termid":"MONDO:0010482","xrefs":{"Monarch":{"xref_id":"0010482"}}}


id: GO:0039536
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the RIG-I signaling pathway.","definition_xrefs":["GOC:bf","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytoplasmic pattern recognition receptor signaling pathway","termid":"GO:0039532"},{"relation_name":"is_a","term_name":"regulation of RIG-I signaling pathway","termid":"GO:0039535"},{"relation_name":"negatively_regulates","term_name":"RIG-I signaling pathway","termid":"GO:0039529"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of RIG-I signaling pathway","synonyms":[{"name":"negative regulation of DDX58 signaling pathway","type":"exact"},{"name":"negative regulation of RIG-I signalling pathway","type":"exact"},{"name":"negative regulation of retinoic acid inducible gene I signaling pathway","type":"exact"}],"termid":"GO:0039536"}


id: MONDO:0019199
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Interstitial granulomatous dermatitis with arthritis is a rare rheumatologic disease characterized by the occurrence of inflammatory arthritis in association with large, erythematous, symmetrical cutaneous lesions (ranging from typical, but infrequent, cord-like lesions on the flanks to more common violaceous plaques on the trunk and limbs) featuring a typical histologic infiltrate mainly constituted of histiocytes.","definition_xrefs":["Orphanet:79099"],"direct_ancestors":[{"relation_name":"is_a","term_name":"skin disorder","termid":"MONDO:0005093"},{"relation_name":"is_a","term_name":"rheumatic disorder","termid":"MONDO:0005554"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"interstitial granulomatous dermatitis with arthritis","secondary_identifiers":["UMLS:C4751206","GARD:18940","MEDGEN:1658052"],"synonyms":[{"name":"Ackerman dermatitis syndrome","type":"exact"},{"name":"IGDA","type":"exact"}],"termid":"MONDO:0019199","xrefs":{"Monarch":{"xref_id":"0019199"}}}


id: GO:0140086
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The structure located at the interface of the basement membrane and interstitial extracellular matrix and anchoring the two types of ECM to one another.","definition_xrefs":["PMID:19945621","PMID:26377767","PMID:7767545","PMID:9334230"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellular matrix","termid":"GO:0031012"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"basement membrane/interstitial matrix interface","termid":"GO:0140086"}


id: PBO:0044152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CTDNEP1 pseudogene 1","termid":"PBO:0044152"}


id: PBO:0056402
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAPT intronic transcript 1","termid":"PBO:0056402"}


id: PBO:0062624
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 11 subfamily H member 1","termid":"PBO:0062624"}


id: MOD:01861
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that crosslinks two residues by condensation of a cysteine thiol with the amido nitrogen of the following residue to form an isothiazolidinone ring.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"crosslinked residues","termid":"MOD:00033"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"isothiazolidinone ring crosslinked residues","termid":"MOD:01861"}


id: MONDO:0009754
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant severe congenital neutropenia","termid":"MONDO:0008742"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"neutropenia, lethal congenital, with eosinophilia","secondary_identifiers":["MEDGEN:338037","UMLS:C1850381","MESH:C564943","GARD:6107","OMIM:257100"],"synonyms":[{"name":"lethal congenital neutropenia with eosinophilia","type":"related"},{"name":"neutropenia lethal congenital with eosinophilia","type":"related"},{"name":"neutropenia, lethal congenital, with eosinophilia","type":"exact"}],"termid":"MONDO:0009754","xrefs":{"Monarch":{"xref_id":"0009754"}}}


id: MONDO:0014532
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inborn mitochondrial myopathy","termid":"MONDO:0009637"},{"relation_name":"is_a","term_name":"mitochondrial oxidative phosphorylation disorder","termid":"MONDO:0016387"},{"relation_name":"is_a","term_name":"metabolic myopathy","termid":"MONDO:0020123"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0005336","MONDO:0004069"],"is_obsolete":false,"name":"autosomal dominant mitochondrial myopathy with exercise intolerance","secondary_identifiers":["Orphanet:457050","OMIM:616209","DOID:0081357","MEDGEN:863950","UMLS:C4015513","GARD:17794"],"synonyms":[{"name":"IMMD","type":"related"},{"name":"myopathy, isolated mitochondrial, autosomal dominant","type":"related"}],"termid":"MONDO:0014532","xrefs":{"Monarch":{"xref_id":"0014532"}}}


id: GO:1900329
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of mannotriose transport.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of transport","termid":"GO:0051050"},{"relation_name":"is_a","term_name":"regulation of mannotriose transport","termid":"GO:1900327"},{"relation_name":"positively_regulates","term_name":"mannotriose transport","termid":"GO:2001095"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of mannotriose transport","synonyms":[{"name":"activation of mannotriose transport","type":"narrow"},{"name":"up regulation of mannotriose transport","type":"exact"},{"name":"up-regulation of mannotriose transport","type":"exact"},{"name":"upregulation of mannotriose transport","type":"exact"}],"termid":"GO:1900329"}


