# terms

id: GO:1902731
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the multiplication or reproduction of chondrocytes by cell division, resulting in the expansion of their population. A chondrocyte is a polymorphic cell that forms cartilage.","definition_xrefs":["GO_REF:0000058","PMID:23212449","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell population proliferation","termid":"GO:0008285"},{"relation_name":"negatively_regulates","term_name":"chondrocyte proliferation","termid":"GO:0035988"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of chondrocyte proliferation","synonyms":[{"name":"down regulation of cartilage cell proliferation","type":"exact"},{"name":"down regulation of chondrocyte cell proliferation","type":"exact"},{"name":"down regulation of chondrocyte proliferation","type":"exact"},{"name":"down-regulation of cartilage cell proliferation","type":"exact"},{"name":"down-regulation of chondrocyte cell proliferation","type":"exact"},{"name":"down-regulation of chondrocyte proliferation","type":"exact"},{"name":"downregulation of cartilage cell proliferation","type":"exact"},{"name":"downregulation of chondrocyte cell proliferation","type":"exact"},{"name":"downregulation of chondrocyte proliferation","type":"exact"},{"name":"inhibition of cartilage cell proliferation","type":"narrow"},{"name":"inhibition of chondrocyte cell proliferation","type":"narrow"},{"name":"inhibition of chondrocyte proliferation","type":"narrow"},{"name":"negative regulation of cartilage cell proliferation","type":"exact"},{"name":"negative regulation of chondrocyte cell proliferation","type":"exact"}],"termid":"GO:1902731"}


id: GO:0047418
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + a phthalylamide = phthalate + substituted amine.","definition_xrefs":["EC:3.5.1.79","MetaCyc:3.5.1.79-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016810"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016787","GO:0016810"],"is_obsolete":false,"name":"phthalyl amidase activity","secondary_identifiers":["RHEA:18297"],"synonyms":[{"name":"o-phthalyl amidase activity","type":"narrow"},{"name":"phthalyl-amide amidohydrolase activity","type":"related"}],"termid":"GO:0047418"}


id: MONDO:0001125
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Acute form of gonococcal epididymo-orchitis.","definition_xrefs":["MONDO:patterns/acute"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acute disease","termid":"MONDO:0020683"},{"relation_name":"is_a","term_name":"gonococcal epididymo-orchitis","termid":"MONDO:0021158"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acute gonococcal epididymo-orchitis","secondary_identifiers":["MEDGEN:509195","ICD9:098.13","DOID:10802","SCTID:30168008","UMLS:C0153193"],"synonyms":[{"name":"gonococcal epididymo-orchitis (acute)","type":"exact"},{"name":"gonococcal epididymo-orchitis, acute","type":"exact"}],"termid":"MONDO:0001125","xrefs":{"Monarch":{"xref_id":"0001125"}}}


id: PBO:0051227
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable (II)-20-1 (pseudogene)","termid":"PBO:0051227"}


id: MONDO:0005831
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Tuberculosis of the lymph node.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extrapulmonary tuberculosis","termid":"MONDO:0000368"},{"relation_name":"is_a","term_name":"lymph node disorder","termid":"MONDO:0004928"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"lymph node tuberculosis","secondary_identifiers":["MEDGEN:11946","MESH:D014388","NCIT:C26896","SCTID:10893003","EFO:0007350","UMLS:C0041316","DOID:4889"],"synonyms":[{"name":"king's evil","type":"exact"},{"name":"lymph node tuberculosis","type":"exact"},{"name":"scrofula","type":"exact"},{"name":"tuberculous adenitis","type":"exact"},{"name":"tuberculous lymphadenopathy","type":"exact"}],"termid":"MONDO:0005831","xrefs":{"Monarch":{"xref_id":"0005831"}}}


id: PBO:0050406
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein C pseudogene 8","termid":"PBO:0050406"}


id: PBO:0040850
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"biogenesis of lysosomal organelles complex 1 subunit 4","termid":"PBO:0040850"}


id: GO:2001031
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of cellular glucuronidation.","definition_xrefs":["GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of cellular glucuronidation (obsolete GO:2001031)","synonyms":[{"name":"positive regulation of cellular glucuronide biosynthesis","type":"exact"},{"name":"positive regulation of cellular glucuronide biosynthetic process","type":"exact"},{"name":"positive regulation of cellular glucuronoside biosynthesis","type":"exact"},{"name":"positive regulation of cellular glucuronoside biosynthetic process","type":"exact"}],"termid":"GO:2001031"}


id: PBO:0082208
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alpha-1,3-mannosyltransferase; adds the fourth and fifth alpha-1,3-linked mannose residues to O-linked glycans during protein O-glycosylation","termid":"PBO:0082208"}


id: GO:0030458
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:elh"],"gene_count":0,"genotype_count":0,"name":"obsolete activation of MAPKKK (mating sensu Fungi) (obsolete GO:0030458)","synonyms":[{"name":"activation of MAPKKK (mating sensu Fungi)","type":"exact"}],"termid":"GO:0030458"}


id: GO:0008543
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands.","definition_xrefs":["GOC:ceb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell surface receptor protein tyrosine kinase signaling pathway","termid":"GO:0007169"},{"relation_name":"part_of","term_name":"cellular response to fibroblast growth factor stimulus","termid":"GO:0044344"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"fibroblast growth factor receptor signaling pathway","secondary_identifiers":["Reactome:R-HSA-190236"],"synonyms":[{"name":"FGF receptor signaling pathway","type":"exact"},{"name":"FGF receptor signalling pathway","type":"exact"},{"name":"FGFR signaling pathway","type":"exact"},{"name":"fibroblast growth factor receptor signalling pathway","type":"exact"}],"termid":"GO:0008543"}


id: GO:0045995
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of embryonic development.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of multicellular organismal development","termid":"GO:2000026"},{"relation_name":"regulates","term_name":"embryo development","termid":"GO:0009790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of embryonic development","termid":"GO:0045995"}


id: PBO:0034701
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AP-2 adaptor complex mu subunit Apm4 (predicted)","termid":"PBO:0034701"}


id: FYPO:0000886
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the dimethylation of lysine at position 9 of histone H3 in centromere outer repeat regions is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone H3-K9 dimethylation at centromere during vegetative growth","termid":"FYPO:0000867"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0002274","FYPO:0002494","FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abnormal histone H3-K9 dimethylation at centromere outer repeat during vegetative growth","synonyms":[{"name":"abnormal histone H3 K9 dimethylation at centromere outer repeat during vegetative growth","type":"exact"},{"name":"abnormal histone H3-K9 dimethylation at centromere otr during vegetative growth","type":"exact"},{"name":"abnormal histone H3-K9 dimethylation at centromere outer repeat during mitotic cell cycle","type":"related"},{"name":"abnormal histone H3-K9 dimethylation at centromeric outer repeat region during vegetative growth","type":"exact"},{"name":"abnormal histone H3-K9 dimethylation at pericentric region during vegetative growth","type":"related"},{"name":"abnormal histone H3-K9 dimethylation at pericentromeric region during vegetative growth","type":"related"},{"name":"abnormal histone H3K9 dimethylation at centromere outer repeat during vegetative growth","type":"exact"},{"name":"abnormal histone H3K9me2 at centromere outer repeat during vegetative growth","type":"exact"},{"name":"abnormal histone lysine H3 K9 dimethylation at centromere outer repeat during vegetative growth","type":"exact"}],"termid":"FYPO:0000886"}


id: PBO:0070984
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L19 pseudogene 8","termid":"PBO:0070984"}


id: GO:0072679
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The movement of a thymocyte through distinct intrathymic niches (e.g. medulla, cortex), where it receives a unique set of developmental cues required for T-cell development.","definition_xrefs":["CL:0000893","GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T cell migration","termid":"GO:0072678"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"thymocyte migration","synonyms":[{"name":"immature T cell migration","type":"related"},{"name":"immature T lymphocyte migration","type":"related"},{"name":"immature T-cell migration","type":"related"},{"name":"immature T-lymphocyte migration","type":"related"},{"name":"thymic lymphocyte migration","type":"exact"}],"termid":"GO:0072679"}


id: GO:0021723
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the medullary reticular formation over time, from its formation to the mature structure. The medullary reticular formation is a series of brain nuclei located in the medulla oblongata.","definition_xrefs":["Wikipedia:Rhombencephalon","GO_REF:0000021","GOC:cjm","GOC:dgh","GOC:curators","GOC:cls","GOC:jid","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"medulla oblongata development","termid":"GO:0021550"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"medullary reticular formation development","synonyms":[{"name":"rhombencephalic reticular formation development","type":"broad"}],"termid":"GO:0021723"}


id: MONDO:0000488
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A adenoma that involves the periampullary region of duodenum.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"ampulla of vater neoplasm","termid":"MONDO:0000921"},{"relation_name":"is_a","term_name":"adenoma of small intestine","termid":"MONDO:0021303"},{"relation_name":"is_a","term_name":"tumor of duodenum","termid":"MONDO:0021375"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"periampullary adenoma","secondary_identifiers":["DOID:0050849"],"synonyms":[{"name":"periampullary region of duodenum adenoma","type":"exact"}],"termid":"MONDO:0000488","xrefs":{"Monarch":{"xref_id":"0000488"}}}


id: GO:0071499
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a laminar fluid shear stress stimulus. Laminar fluid flow is the force acting on an object in a system where the fluid is moving across a solid surface in parallel layers.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to laminar fluid shear stress","termid":"GO:0034616"},{"relation_name":"is_a","term_name":"cellular response to fluid shear stress","termid":"GO:0071498"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to laminar fluid shear stress","termid":"GO:0071499"}


id: PBO:0057574
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 770","termid":"PBO:0057574"}


id: GO:0031157
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the size of the aggregate formed during sorocarp formation.","definition_xrefs":["GOC:mah","GOC:mtg_sensu","GOC:pg","PMID:4338436"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of aggregation involved in sorocarp development","termid":"GO:0060176"},{"relation_name":"is_a","term_name":"regulation of biological quality","termid":"GO:0065008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of aggregate size involved in sorocarp development","synonyms":[{"name":"regulation of aggregation during fruiting body biosynthesis","type":"related"},{"name":"regulation of aggregation during fruiting body formation","type":"related"}],"termid":"GO:0031157"}


id: MONDO:0008817
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An autosomal recessive genetic disorder caused by mutations in the ENPP1 gene, encoding ectonucleotide pyrophosphatase/phosphodiesterase family member 1. The condition is characterized by calcification and narrowing of medium- and large-sized arteries, resulting in cardiovascular complications.","definition_xrefs":["NCIT:C128805"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arterial calcification of infancy","termid":"MONDO:0018870"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arterial calcification, generalized, of infancy, 1","secondary_identifiers":["OMIM:208000","MEDGEN:1631685","UMLS:C4551985"],"synonyms":[{"name":"ENPP1 arterial calcification of infancy","type":"exact"},{"name":"GACI1","type":"related"},{"name":"Gaci","type":"related"},{"name":"arterial calcification of infancy caused by mutation in ENPP1","type":"exact"},{"name":"arterial calcification, generalized, of infancy, 1","type":"exact"},{"name":"arterial calcification, generalized, of infancy, type 1","type":"exact"},{"name":"arterial calcification, idiopathic infantile","type":"related"},{"name":"arteriopathy, occlusive infantile","type":"related"},{"name":"coronary sclerosis, medial, of infancy","type":"related"},{"name":"generalised arterial calcification of infancy 1","type":"exact"},{"name":"generalized arterial calcification of infancy 1","type":"exact"},{"name":"idiopathic infantile arterial calcification","type":"related"}],"termid":"MONDO:0008817","xrefs":{"Monarch":{"xref_id":"0008817"}}}


id: GO:0006782
data:
  {"annotated_genes":["SJAG_04944","SJAG_03961","SJAG_02896","SJAG_04109","SJAG_02876","SJAG_01372","SJAG_00097","SJAG_05283"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[57224,59191,60268,63010,63148,64832,67756,80273],"is_not":false,"summary":null,"term":"GO:0006782"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of protoporphyrinogen IX.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"porphyrin-containing compound biosynthetic process","termid":"GO:0006779"},{"relation_name":"is_a","term_name":"protoporphyrinogen IX metabolic process","termid":"GO:0046501"},{"relation_name":"part_of","term_name":"heme biosynthetic process","termid":"GO:0006783"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00097":null,"SJAG_01372":null,"SJAG_02876":null,"SJAG_02896":null,"SJAG_03961":null,"SJAG_04109":null,"SJAG_04944":null,"SJAG_05283":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0033013"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0033013"}],"interesting_parent_ids":["GO:0033013","GO:0008150"],"is_obsolete":false,"name":"protoporphyrinogen IX biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000041":null},"synonyms":[{"name":"protoporphyrinogen IX anabolism","type":"exact"},{"name":"protoporphyrinogen IX biosynthesis","type":"exact"},{"name":"protoporphyrinogen IX formation","type":"exact"},{"name":"protoporphyrinogen IX synthesis","type":"exact"}],"termid":"GO:0006782","terms_by_termid":{"GO:0006782":null}}


id: FYPO:0002114
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype that affects a transmembrane transporter activity.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular process phenotype","termid":"FYPO:0000114"},{"relation_name":"is_a","term_name":"molecular function phenotype","termid":"FYPO:0000652"}],"gene_count":0,"genotype_count":0,"in_subsets":["fypo_slim"],"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000652"],"is_obsolete":false,"name":"transmembrane transporter activity phenotype","synonyms":[{"name":"fission yeast transporter activity phenotype","type":"exact"}],"termid":"FYPO:0002114"}


id: MONDO:0011856
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spondylometaphyseal dysplasia","termid":"MONDO:0016763"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spondylometaphyseal dysplasia-bowed forearms-facial dysmorphism syndrome","secondary_identifiers":["DOID:0112305","GARD:8719","OMIM:607543","MEDGEN:375263","Orphanet:168552","UMLS:C1843706","MESH:C535791"],"synonyms":[{"name":"SmD with bowed forearms and Facial Dysmorphism","type":"related"},{"name":"SmD with with bowed forearms and facial dysmorphism","type":"related"},{"name":"spondylometaphyseal dysplasia with bowed forearms and facial dysmorphism","type":"related"}],"termid":"MONDO:0011856","xrefs":{"Monarch":{"xref_id":"0011856"}}}


id: MONDO:0005813
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplastic proliferation of spindle to ovoid cells which show phenotypic features similar to those of interdigitating dendritic cells. The clinical course is generally aggressive. (WHO, 2008)","definition_xrefs":["NCIT:C9282"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dendritic cell sarcoma","termid":"MONDO:0004380"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046","MONDO:0004992"],"is_obsolete":false,"name":"interdigitating dendritic cell sarcoma","secondary_identifiers":["MESH:D054739","ICDO:9757/1","SCTID:715664005","icd11.foundation:214592620","ONCOTREE:IDCS","DOID:7848","NANDO:2200035","UMLS:C1260326","icd11.foundation:2024362257","ICDO:9757/3","EFO:0007329","MEDGEN:266040"],"synonyms":[{"name":"interdigitating Dendritic cell sarcoma","type":"exact"},{"name":"interdigitating Dendritic cell sarcoma/tumor","type":"exact"},{"name":"interdigitating cell sarcoma","type":"broad"},{"name":"interdigitating cell sarcoma/tumor","type":"exact"}],"termid":"MONDO:0005813","xrefs":{"Monarch":{"xref_id":"0005813"}}}


id: PBO:0111776
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Yip1 family","termid":"PBO:0111776"}


id: PBO:0002603
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.4.3.5","termid":"PBO:0002603"}


id: MONDO:0001250
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An eye disorder that results from vitamin A deficiency, with basis in disruption of maintenance of the specialized epithelial surfaces, leading to atrophic changes in the normal mucosal surface, with loss of goblet cells, and replacement of the normal epithelium by an inappropriate keratinized stratified squamous epithelium. In addition, the substantia propria of the cornea breaks down and liquefies, resulting in keratomalacia.","definition_xrefs":["Wikipedia:Keratomalacia"],"direct_ancestors":[{"relation_name":"is_a","term_name":"eye disorder","termid":"MONDO:0005328"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"keratomalacia","secondary_identifiers":["DOID:11267","UMLS:C0152455","SCTID:85149007","icd11.foundation:497316188","ICD9:371.45","MEDGEN:57777","MESH:C536156"],"termid":"MONDO:0001250","xrefs":{"Monarch":{"xref_id":"0001250"}}}


id: PATO:0001258
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"Pink color having medium brightness and moderate saturation.","definition_xrefs":["PATOC:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pink","termid":"PATO:0000954"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deep pink","termid":"PATO:0001258"}


id: MONDO:0005691
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Infections caused by viruses of the genus cardiovirus, family picornaviridae.","definition_xrefs":["MESH:D018188"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Picornaviridae infectious disease","termid":"MONDO:0005914"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cardiovirus infectious disease","secondary_identifiers":["MEDGEN:60193","UMLS:C0206617","EFO:0007194"],"synonyms":[{"name":"Cardiovirus infection","type":"related"},{"name":"infection, Cardiovirus","type":"related"},{"name":"infections, Cardiovirus","type":"related"}],"termid":"MONDO:0005691","xrefs":{"Monarch":{"xref_id":"0005691"}}}


id: PBO:0053029
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysosomal protein transmembrane 4 beta","termid":"PBO:0053029"}


id: PBO:0005746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfonate dioxygenase (predicted)","termid":"PBO:0005746"}


id: PBO:0079528
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-yW synthesizing protein 1 homolog pseudogene 1","termid":"PBO:0079528"}


id: PR:P87144
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A threonyl-tRNA synthetase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03641"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"threonine--tRNA ligase, cytoplasmic (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC25H2.02","secondary_identifiers":["UniProtKB:P87144"],"synonyms":[{"name":"Spom972h-thrS","type":"exact"},{"name":"ThrRS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"threonyl-tRNA synthetase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P87144"}


id: GO:0031632
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of synaptic vesicle fusion to the presynaptic membrane.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of vesicle fusion","termid":"GO:0031340"},{"relation_name":"is_a","term_name":"regulation of synaptic vesicle fusion to presynaptic active zone membrane","termid":"GO:0031630"},{"relation_name":"is_a","term_name":"positive regulation of synaptic vesicle membrane organization","termid":"GO:1901634"},{"relation_name":"positively_regulates","term_name":"synaptic vesicle fusion to presynaptic active zone membrane","termid":"GO:0031629"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0061024"},{"rel_name":"positively_regulates","termid":"GO:0061024"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0016192","GO:0061024"],"is_obsolete":false,"name":"positive regulation of synaptic vesicle fusion to presynaptic active zone membrane","synonyms":[{"name":"activation of synaptic vesicle fusion to presynaptic membrane","type":"narrow"},{"name":"negative regulation of synaptic vesicle fusion to presynaptic membrane","type":"exact"},{"name":"positive regulation of synaptic vesicle fusion to pre-synaptic membrane","type":"exact"},{"name":"stimulation of synaptic vesicle fusion to presynaptic membrane","type":"narrow"},{"name":"up regulation of synaptic vesicle fusion to presynaptic active zone membrane","type":"exact"},{"name":"up regulation of synaptic vesicle fusion to presynaptic membrane","type":"exact"},{"name":"up-regulation of synaptic vesicle fusion to presynaptic active zone membrane","type":"exact"},{"name":"up-regulation of synaptic vesicle fusion to presynaptic membrane","type":"exact"},{"name":"upregulation of synaptic vesicle fusion to presynaptic membrane","type":"exact"}],"termid":"GO:0031632"}


id: GO:0045747
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the Notch signaling pathway.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of Notch signaling pathway","termid":"GO:0008593"},{"relation_name":"is_a","term_name":"positive regulation of signal transduction","termid":"GO:0009967"},{"relation_name":"positively_regulates","term_name":"Notch signaling pathway","termid":"GO:0007219"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of Notch signaling pathway","synonyms":[{"name":"activation of Notch signaling pathway","type":"narrow"},{"name":"positive regulation of N signaling pathway","type":"exact"},{"name":"positive regulation of N signalling pathway","type":"exact"},{"name":"positive regulation of Notch signalling pathway","type":"exact"},{"name":"stimulation of Notch signaling pathway","type":"narrow"},{"name":"up regulation of Notch signaling pathway","type":"exact"},{"name":"up-regulation of Notch signaling pathway","type":"exact"},{"name":"upregulation of Notch signaling pathway","type":"exact"}],"termid":"GO:0045747"}


id: GO:0140164
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a Golgi transport complex, a multisubunit tethering complex of the CATCHR family.","definition_xrefs":["GOC:ha","PMID:28100664"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex binding","termid":"GO:0044877"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"Golgi transport complex binding","synonyms":[{"name":"COG complex binding","type":"exact"}],"termid":"GO:0140164"}


id: GO:0017186
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of peptidyl-pyroglutamic acid, catalyzed by glutaminyl-peptide cyclotransferase.","definition_xrefs":["RESID:AA0031"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-glutamine modification","termid":"GO:0018199"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase","synonyms":[{"name":"2-pyrrolidone-5-carboxylic acid biosynthesis","type":"exact"},{"name":"2-pyrrolidone-5-carboxylic acid biosynthetic process","type":"exact"},{"name":"peptidyl-pyroglutamic acid anabolism, using glutaminyl-peptide cyclotransferase","type":"exact"},{"name":"peptidyl-pyroglutamic acid formation, using glutaminyl-peptide cyclotransferase","type":"exact"},{"name":"peptidyl-pyroglutamic acid synthesis, using glutaminyl-peptide cyclotransferase","type":"exact"}],"termid":"GO:0017186"}


id: GO:0043800
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-arabino-hex-3-ulose 6-phosphate = beta-D-fructose 6-phosphate.","definition_xrefs":["RHEA:25900","PMID:11839305"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular oxidoreductase activity, interconverting aldoses and ketoses","termid":"GO:0016861"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0003824","GO:0016853","GO:0003674"],"is_obsolete":false,"name":"6-phospho-3-hexuloisomerase activity","secondary_identifiers":["MetaCyc:R12-RXN","EC:5.3.1.27"],"synonyms":[{"name":"HUMPI","type":"exact"},{"name":"hexulose-6-phosphate isomerase activity","type":"exact"}],"termid":"GO:0043800"}


id: GO:0034251
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of amides.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of catabolic process","termid":"GO:0009894"},{"relation_name":"is_a","term_name":"regulation of amide metabolic process","termid":"GO:0034248"},{"relation_name":"regulates","term_name":"amide catabolic process","termid":"GO:0043605"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of amide catabolic process","synonyms":[{"name":"regulation of amide breakdown","type":"exact"},{"name":"regulation of amide catabolism","type":"exact"},{"name":"regulation of amide degradation","type":"exact"},{"name":"regulation of cellular amide catabolic process","type":"exact"}],"termid":"GO:0034251"}


id: GO:0030041
data:
  {"annotated_genes":["SJAG_00279","SJAG_02245","SJAG_03086","SJAG_02700","SJAG_00521","SJAG_02566","SJAG_01894","SJAG_00677","SJAG_04479","SJAG_04100","SJAG_01268","SJAG_01993","SJAG_04982"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[65083,94165,98047,99161],"is_not":false,"summary":null,"term":"GO:0030041"},{"annotations":[76057,92666,79524,80555],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0051016"},{"annotations":[68426,79783,77641,76970,67297],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0030833"}]},"cv_name":"biological_process","definition":"Assembly of actin filaments by the addition of actin monomers to a filament.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"actin polymerization or depolymerization","termid":"GO:0008154"},{"relation_name":"is_a","term_name":"protein polymerization","termid":"GO:0051258"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00279":null,"SJAG_00521":null,"SJAG_00677":null,"SJAG_01268":null,"SJAG_01894":null,"SJAG_01993":null,"SJAG_02245":null,"SJAG_02566":null,"SJAG_02700":null,"SJAG_03086":null,"SJAG_04100":null,"SJAG_04479":null,"SJAG_04982":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007010"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0030036"}],"interesting_parent_ids":["GO:0044085","GO:0030036","GO:0065003","GO:0008150","GO:0007010"],"is_obsolete":false,"name":"actin filament polymerization","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null},"synonyms":[{"name":"actin polymerization","type":"exact"},{"name":"actin polymerizing activity","type":"related"}],"termid":"GO:0030041","terms_by_termid":{"GO:0030041":null,"GO:0030833":null,"GO:0051016":null}}


id: GO:2000913
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of galactoglucomannan catabolic process.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of catabolic process","termid":"GO:0009895"},{"relation_name":"is_a","term_name":"negative regulation of macromolecule metabolic process","termid":"GO:0010605"},{"relation_name":"is_a","term_name":"negative regulation of carbohydrate metabolic process","termid":"GO:0045912"},{"relation_name":"is_a","term_name":"regulation of galactoglucomannan catabolic process","termid":"GO:2000912"},{"relation_name":"negatively_regulates","term_name":"galactoglucomannan catabolic process","termid":"GO:2000885"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0005975"},{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"negative regulation of galactoglucomannan catabolic process","synonyms":[{"name":"negative regulation of galactoglucomannan catabolism","type":"exact"}],"termid":"GO:2000913"}


id: GO:1990012
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A cytoplasmic inclusion body found in some lateral geniculate neurons and composed of sheets of tubules (25 nm in diameter) separated by dense material (about 75 nm wide), which together with the tubules whorl give a structure resembling a fingerprint.","definition_xrefs":["NIF_Subcellular:nlx_151681"],"direct_ancestors":[{"relation_name":"is_a","term_name":"laminated body","termid":"GO:1990011"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"complex laminated body","synonyms":[{"name":"CLB","type":"related"}],"termid":"GO:1990012"}


id: GO:0046332
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a SMAD signaling protein.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"SMAD binding","termid":"GO:0046332"}


id: PR:O60101
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A phosphoglycerate kinase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoglycerate kinase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC14F5.04c","secondary_identifiers":["UniProtKB:O60101"],"synonyms":[{"name":"SPBC14F5.04c","type":"related"},{"name":"Spom972h-pgk","type":"exact"}],"termid":"PR:O60101"}


id: PBO:0034353
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-in_postdisplacement_relationship_with","termid":"PBO:0034353"}


id: PBO:0034125
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_symptom","termid":"PBO:0034125"}


id: SO:1001261
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The sequence of a mature mRNA transcript, modified before translation or during translation, usually by special cis-acting signals.","direct_ancestors":[{"relation_name":"has_quality","term_name":"recoded","termid":"SO:0000881"},{"relation_name":"is_a","term_name":"mRNA","termid":"SO:0000234"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"recoded_mRNA","synonyms":[{"name":"recoded mRNA","type":"exact"}],"termid":"SO:1001261"}


id: FYPO:0006635
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cell tip is normal (i.e. indistinguishable from wild type) during interphase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to cell tip during vegetative growth","termid":"FYPO:0001587"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0001312","FYPO:0001320","FYPO:0000138"],"is_obsolete":false,"name":"normal protein localization to cell tip during mitotic interphase","synonyms":[{"name":"normal protein localisation to cell tip during mitotic interphase","type":"exact"},{"name":"normal protein localization to cell end during mitotic interphase","type":"exact"},{"name":"normal protein localization to cell tip during interphase during mitotic cell cycle","type":"related"},{"name":"normal protein localization to cell tip during mitotic interphase during vegetative growth","type":"exact"}],"termid":"FYPO:0006635"}


id: GO:0061389
data:
  {"annotated_genes":["SJAG_03486","SJAG_00216","SJAG_01456","SJAG_02838","SJAG_04724","SJAG_03705","SJAG_04322"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[111070,118205,103803,107169,116780,100063,88397],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051523"}]},"cv_name":"biological_process","definition":"Any process that modulates the direction of cell growth.","definition_xrefs":["GOC:mah","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell growth","termid":"GO:0001558"},{"relation_name":"is_a","term_name":"regulation of cell shape","termid":"GO:0008360"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00216":null,"SJAG_01456":null,"SJAG_02838":null,"SJAG_03486":null,"SJAG_03705":null,"SJAG_04322":null,"SJAG_04724":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of direction of cell growth","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0061389","terms_by_termid":{"GO:0051523":null}}


id: MONDO:0013432
data:
  {"annotated_genes":["SJAG_02074"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87251],"is_not":false,"summary":null,"term":"MONDO:0013432"}]},"cv_name":"mondo","definition":"Any Meier-Gorlin syndrome in which the cause of the disease is a mutation in the CDC6 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Meier-Gorlin syndrome","termid":"MONDO:0016817"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02074":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025"],"is_obsolete":false,"name":"Meier-Gorlin syndrome 5","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0080516","OMIM:613805","MEDGEN:462476","UMLS:C3151126","GARD:15712"],"synonyms":[{"name":"CDC6 Meier-Gorlin syndrome","type":"exact"},{"name":"MGORS5","type":"related"},{"name":"Meier-GORLIN syndrome 5","type":"related"},{"name":"Meier-Gorlin syndrome 5","type":"exact"},{"name":"Meier-Gorlin syndrome caused by mutation in CDC6","type":"exact"},{"name":"Meier-Gorlin syndrome type 5","type":"exact"}],"termid":"MONDO:0013432","terms_by_termid":{"MONDO:0013432":null},"xrefs":{"Monarch":{"xref_id":"0013432"}}}


id: FYPO:0008251
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA transcribed from cenH measured in a cell is lower than normal. cenH is a region located between mat2-P and mat3-M that is homologous to centromeric repeats, and that produces non-coding RNAs and small interfering RNAs.","definition_xrefs":["PomBase:pc","PMID:25356590"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level during vegetative growth","termid":"FYPO:0001117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0006551","FYPO:0005447"],"is_obsolete":false,"name":"decreased cenH-derived RNA level","termid":"FYPO:0008251"}


id: FYPO:0006672
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which mating cells undergo transient cell fusion (cytogamy), and then one or both cells undergo haploid meiosis and sporulation. In transient cytogamy, cells fuse for a much shorter time than normal during mating, separate with incomplete exchange of cytosol contents, and the conjugation pore then reseals.","definition_xrefs":["PMID:30089908","PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"abolished nuclear fusion during mating","termid":"FYPO:0000511"},{"relation_name":"has_part","term_name":"abnormal meiotic cell cycle entry","termid":"FYPO:0009006"},{"relation_name":"is_a","term_name":"abnormal meiotic cell cycle","termid":"FYPO:0000052"},{"relation_name":"is_a","term_name":"abolished nuclear fusion during mating","termid":"FYPO:0000511"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"has_part","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000301"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000301"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000301","FYPO:0001985","FYPO:0005447","FYPO:0000631"],"is_obsolete":false,"name":"transient cell fusion during mating followed by meiotic cell cycle entry and sporulation","synonyms":[{"name":"transient cell fusion during mating followed by meiotic cell cycle entry and sporulation in haploid","type":"exact"},{"name":"transient cytogamy followed by meiotic cell cycle entry and sporulation in haploid","type":"exact"}],"termid":"FYPO:0006672"}


id: PBO:0053396
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 326","termid":"PBO:0053396"}


id: GO:0048363
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving the pectin component of mucilage.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pectin metabolic process","termid":"GO:0045488"},{"relation_name":"part_of","term_name":"mucilage metabolic process","termid":"GO:0010191"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"mucilage pectin metabolic process","synonyms":[{"name":"mucilage pectin metabolism","type":"exact"}],"termid":"GO:0048363"}


id: PBO:0052354
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin family member 5A","termid":"PBO:0052354"}


id: MONDO:0002859
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant mesenchymal tumor with skeletal muscle differentiation affecting the breast.","definition_xrefs":["NCIT:C5190"],"direct_ancestors":[{"relation_name":"is_a","term_name":"breast sarcoma","termid":"MONDO:0002490"},{"relation_name":"is_a","term_name":"rhabdomyosarcoma","termid":"MONDO:0005212"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"breast rhabdomyosarcoma","secondary_identifiers":["MEDGEN:231970","UMLS:C1332637","DOID:4060"],"synonyms":[{"name":"breast rhabdomyosarcoma","type":"exact"},{"name":"breast rhabdomyosarcoma (disease)","type":"exact"},{"name":"rhabdomyosarcoma (disease) of breast","type":"exact"},{"name":"rhabdomyosarcoma of breast","type":"exact"},{"name":"rhabdomyosarcoma of the breast","type":"exact"}],"termid":"MONDO:0002859","xrefs":{"Monarch":{"xref_id":"0002859"}}}


id: PBO:0054168
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1539","termid":"PBO:0054168"}


id: PBO:0031518
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-protein_binding_phenotype","termid":"PBO:0031518"}


id: MONDO:0011340
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"otorhinolaryngologic disease","termid":"MONDO:0024623"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital tracheal stenosis","secondary_identifiers":["NANDO:1201003","Orphanet:141127","ICD9:748.3","GARD:12008","MEDGEN:120556","MESH:C566362","icd11.foundation:2095672409","OMIM:603569","SCTID:9660004","UMLS:C0265767"],"synonyms":[{"name":"tracheobronchial stenosis, congenital","type":"related"}],"termid":"MONDO:0011340","xrefs":{"Monarch":{"xref_id":"0011340"}}}


id: PBO:0064997
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRDM4 antisense RNA 1","termid":"PBO:0064997"}


id: PBO:0055617
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3056","termid":"PBO:0055617"}


id: GO:0050980
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events involved in magnetoception in which a light stimulus is received and converted into a molecular signal. Downstream processing of the light information in addition to other sensory data allows organisms to perceive the orientation of a magnetic field.","definition_xrefs":["GOC:ai","PMID:15886990","Wikipedia:Magnetoception","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detection of light stimulus involved in sensory perception","termid":"GO:0050962"},{"relation_name":"part_of","term_name":"magnetoreception","termid":"GO:0050958"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of light stimulus involved in magnetoreception","synonyms":[{"name":"magnetoreception, detection of light stimulus","type":"exact"},{"name":"magnetoreception, sensory detection of light stimulus","type":"exact"},{"name":"magnetoreception, sensory transduction of light stimulus","type":"exact"},{"name":"sensory detection of light stimulus during magnetoreception","type":"exact"},{"name":"sensory transduction of light stimulus during magnetoreception","type":"exact"}],"termid":"GO:0050980"}


id: GO:0008120
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: an N-acylsphing-4-enine + UDP-alpha-D-glucose = a beta-D-glucosyl-(1<->1')-N-acylsphing-4-enine + H+ + UDP.","definition_xrefs":["RHEA:12088"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glucosyltransferase activity","termid":"GO:0035251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016757","GO:0003674","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"ceramide glucosyltransferase activity","secondary_identifiers":["EC:2.4.1.80","Reactome:R-HSA-1638104","MetaCyc:CERAMIDE-GLUCOSYLTRANSFERASE-RXN"],"synonyms":[{"name":"UDP-glucose-ceramide glucosyltransferase activity","type":"related"},{"name":"UDP-glucose:N-acylsphingosine D-glucosyltransferase activity","type":"related"},{"name":"UDP-glucose:ceramide glucosyltransferase activity","type":"related"},{"name":"UDPglucose:N-acylsphingosine D-glucosyltransferase activity","type":"related"},{"name":"ceramide:UDP-glucose glucosyltransferase activity","type":"related"},{"name":"ceramide:UDPGlc glucosyltransferase activity","type":"related"},{"name":"glucosylceramide synthase activity","type":"related"},{"name":"uridine diphosphoglucose-ceramide glucosyltransferase activity","type":"related"}],"termid":"GO:0008120"}


id: PBO:0031164
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_glutamine_import","termid":"PBO:0031164"}


id: PBO:0047571
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibroblast growth factor 22","termid":"PBO:0047571"}


id: PATO:0000876
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000876 respiratory rate value (obsolete PATO:0000876)","termid":"PATO:0000876"}


id: GO:0120015
data:
  {"annotated_genes":["SJAG_02323","SJAG_00355","SJAG_01329","SJAG_01722","SJAG_01590","SJAG_02375","SJAG_03718"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[77307,94589,102930,108519,109674,111640,116526],"is_not":false,"summary":null,"term":"GO:0120015"}]},"cv_name":"molecular_function","definition":"Removes a sterol from a membrane or a monolayer lipid particle, transports it through the aqueous phase while protected in a hydrophobic pocket, and brings it to an acceptor membrane or lipid particle.","definition_xrefs":["GOC:krc","PMID:24220498","PMID:25797198","PMID:20823909"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipid transfer activity","termid":"GO:0120013"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00355":null,"SJAG_01329":null,"SJAG_01590":null,"SJAG_01722":null,"SJAG_02323":null,"SJAG_02375":null,"SJAG_03718":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0120013"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0120013","GO:0003674"],"is_obsolete":false,"name":"sterol transfer activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-8868402","Reactome:R-HSA-5250531","Reactome:R-HSA-8867667"],"synonyms":[{"name":"intermembrane sterol transfer activity","type":"narrow"},{"name":"sterol carrier activity","type":"exact"}],"termid":"GO:0120015","terms_by_termid":{"GO:0120015":null}}


id: MOD:00577
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Other","definition_xrefs":["Unimod:254","PubMed:7744761"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Unimod","termid":"MOD:00003"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acetaldehyde +26","synonyms":[{"name":"Acetaldehyde +26","type":"related"},{"name":"Delta:H(2)C(2)","type":"related"}],"termid":"MOD:00577"}


id: FYPO:0004676
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of purine-specific mismatch base pair DNA N-glycosylase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal DNA N-glycosylase activity","termid":"FYPO:0008216"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000652","FYPO:0000661","FYPO:0001985","FYPO:0000707"],"is_obsolete":false,"name":"abnormal purine-specific mismatch base pair DNA N-glycosylase activity","termid":"FYPO:0004676"}


id: GO:0003242
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The morphogenic growth in which the chambers of the heart expand in size, contributing to their shaping.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"growth involved in heart morphogenesis","termid":"GO:0003241"},{"relation_name":"part_of","term_name":"cardiac chamber morphogenesis","termid":"GO:0003206"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac chamber ballooning","termid":"GO:0003242"}


id: PBO:0052868
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 5-11","termid":"PBO:0052868"}


id: MONDO:0011628
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Propionic acidemia (PA) is an organic aciduria caused by the deficient activity of the propionyl Coenzyme A carboxylase and is characterized by life threatening episodes of metabolic decompensation, neurological dysfunction and that may be complicated by cardiomyopathy.","definition_xrefs":["Orphanet:35"],"direct_ancestors":[{"relation_name":"is_a","term_name":"classic organic aciduria","termid":"MONDO:0019215"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0004736","MONDO:0005066"],"is_obsolete":false,"name":"propionic acidemia","secondary_identifiers":["DOID:14701","NCIT:C85030","GARD:467","NORD:714","OMIM:606054","MESH:D056693","NANDO:2200492","SCTID:69080001","UMLS:C0268579","ICD10CM:E71.121","MEDGEN:75694","NANDO:1200792"],"synonyms":[{"name":"GLYCINEMIA, ketotic","type":"exact"},{"name":"Glycinemia, ketotic","type":"related"},{"name":"PCC deficiency","type":"related"},{"name":"Propionicacidemia","type":"related"},{"name":"hyperglycinemia with ketoacidosis and leukopenia","type":"related"},{"name":"ketotic II glycinemia","type":"exact"},{"name":"ketotic glycinemia","type":"exact"},{"name":"ketotic hyperglycinemia","type":"exact"},{"name":"prop","type":"related"},{"name":"propionic acidemia","type":"exact"},{"name":"propionic aciduria","type":"exact"},{"name":"propionyl-CoA carboxylase deficiency","type":"exact"},{"name":"propionyl-Coa carboxylase deficiency","type":"related"}],"termid":"MONDO:0011628","xrefs":{"Monarch":{"xref_id":"0011628"}}}


id: GO:2000670
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of dendritic cell apoptotic process.","definition_xrefs":["GOC:mtg_apoptosis","GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of leukocyte apoptotic process","termid":"GO:2000108"},{"relation_name":"is_a","term_name":"regulation of dendritic cell apoptotic process","termid":"GO:2000668"},{"relation_name":"positively_regulates","term_name":"dendritic cell apoptotic process","termid":"GO:0097048"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of dendritic cell apoptotic process","synonyms":[{"name":"positive regulation of dendritic cell apoptosis","type":"narrow"}],"termid":"GO:2000670"}


id: MONDO:0000603
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A hypersensitivity reaction type II disease that involves the cardiovascular system.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiovascular disorder","termid":"MONDO:0004995"},{"relation_name":"is_a","term_name":"autoimmune disease","termid":"MONDO:0007179"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"autoimmune disorder of cardiovascular system","secondary_identifiers":["DOID:0060051"],"synonyms":[{"name":"cardiovascular system autoimmune disease","type":"exact"},{"name":"cardiovascular system hypersensitivity reaction type II disease","type":"exact"}],"termid":"MONDO:0000603","xrefs":{"Monarch":{"xref_id":"0000603"}}}


id: GO:0006096
data:
  {"annotated_genes":["SJAG_00839","SJAG_00685","SJAG_04048","SJAG_03903","SJAG_04192","SJAG_02945","SJAG_03373","SJAG_02107","SJAG_04495","SJAG_06622","SJAG_02009","SJAG_00461","SJAG_02369","SJAG_02796","SJAG_03660","SJAG_04334","SJAG_02785","SJAG_03828","SJAG_01310","SJAG_00605","SJAG_02135","SJAG_05314","SJAG_00027","SJAG_06621"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[109698,103698,105776,95352,116652,106146,105778,109702,109701,105777,109699,98318,78210,109700,98590,103954,109703,106147,94863,109697],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061621"},{"annotations":[88948],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061613"},{"annotations":[73408,76377],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0045820"},{"annotations":[70420],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0006110"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.","definition_xrefs":["ISBN:0201090910","Wikipedia:Glycolysis","ISBN:0716720094","GOC:bf","ISBN:0879010479","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyruvate metabolic process","termid":"GO:0006090"},{"relation_name":"is_a","term_name":"generation of precursor metabolites and energy","termid":"GO:0006091"},{"relation_name":"is_a","term_name":"carbohydrate catabolic process","termid":"GO:0016052"},{"relation_name":"is_a","term_name":"pyridine nucleotide catabolic process","termid":"GO:0019364"},{"relation_name":"is_a","term_name":"ADP catabolic process","termid":"GO:0046032"},{"relation_name":"is_a","term_name":"ATP metabolic process","termid":"GO:0046034"},{"relation_name":"is_a","term_name":"nicotinamide nucleotide metabolic process","termid":"GO:0046496"}],"gene_count":24,"genes_by_uniquename":{"SJAG_00027":null,"SJAG_00461":null,"SJAG_00605":null,"SJAG_00685":null,"SJAG_00839":null,"SJAG_01310":null,"SJAG_02009":null,"SJAG_02107":null,"SJAG_02135":null,"SJAG_02369":null,"SJAG_02785":null,"SJAG_02796":null,"SJAG_02945":null,"SJAG_03373":null,"SJAG_03660":null,"SJAG_03828":null,"SJAG_03903":null,"SJAG_04048":null,"SJAG_04192":null,"SJAG_04334":null,"SJAG_04495":null,"SJAG_05314":null,"SJAG_06621":null,"SJAG_06622":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0008150","GO:0006091","GO:0005975","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"glycolytic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:GLYCOLYSIS-VARIANTS","GO:0019641","GO:0019642"],"synonyms":[{"name":"Embden-Meyerhof pathway","type":"related"},{"name":"Embden-Meyerhof-Parnas pathway","type":"related"},{"name":"anaerobic glycolysis","type":"related"},{"name":"glycolysis","type":"related"},{"name":"modified Embden-Meyerhof pathway","type":"related"}],"termid":"GO:0006096","terms_by_termid":{"GO:0006110":null,"GO:0045820":null,"GO:0061613":null,"GO:0061621":null}}


id: PBO:0074313
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMAD3 divergent transcript","termid":"PBO:0074313"}


id: GO:1902148
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of response to cytokinesis checkpoint signaling.","definition_xrefs":["GOC:mtg_cell_cycle","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of response to cell cycle checkpoint signaling","termid":"GO:1902146"},{"relation_name":"is_a","term_name":"regulation of response to cytokinesis checkpoint signaling","termid":"GO:1902147"},{"relation_name":"positively_regulates","term_name":"response to cytokinesis checkpoint signaling","termid":"GO:0072399"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of response to cytokinesis checkpoint signaling","secondary_identifiers":["GO:1902150"],"synonyms":[{"name":"activation of cytokinesis checkpoint effector process","type":"exact"},{"name":"activation of response to cytokinesis checkpoint signaling","type":"narrow"},{"name":"activation of response to signal involved in cytokinesis checkpoint","type":"exact"},{"name":"positive regulation of cytokinesis checkpoint effector process","type":"exact"},{"name":"positive regulation of response to signal involved in cytokinesis checkpoint","type":"exact"},{"name":"up regulation of cytokinesis checkpoint effector process","type":"exact"},{"name":"up regulation of response to cytokinesis checkpoint signaling","type":"exact"},{"name":"up regulation of response to signal involved in cytokinesis checkpoint","type":"exact"},{"name":"up-regulation of cytokinesis checkpoint effector process","type":"exact"},{"name":"up-regulation of response to cytokinesis checkpoint signaling","type":"exact"},{"name":"up-regulation of response to signal involved in cytokinesis checkpoint","type":"exact"},{"name":"upregulation of cytokinesis checkpoint effector process","type":"exact"},{"name":"upregulation of response to cytokinesis checkpoint signaling","type":"exact"},{"name":"upregulation of response to signal involved in cytokinesis checkpoint","type":"exact"}],"termid":"GO:1902148"}


id: MONDO:0100348
data:
  {"annotated_genes":["SJAG_02517"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86134],"is_not":false,"summary":null,"term":"MONDO:0100348"}]},"cv_name":"mondo","definition":"An autosomal recessive disorder characterized by global developmental delay apparent in infancy. Affected individuals have delayed walking with variable gait abnormalities, impaired intellectual development with poor or absent speech and language, and progressive microcephaly. More variable features include hypotonia, early-onset seizures, and a peripheral demyelinating or axonal peripheral sensorimotor neuropathy. The disease follows a neurodegenerative course in many patients; clinical features suggest involvement of both the central and peripheral nervous systems.","definition_xrefs":["OMIM:619091"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02517":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092","MONDO:0006025"],"is_obsolete":false,"name":"neurodevelopmental disorder with microcephaly, impaired language, and gait abnormalities","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:18534","MEDGEN:1731507","UMLS:C5436783"],"synonyms":[{"name":"NEDMILG, AR","type":"exact"},{"name":"neurodevelopmental disorder with microcephaly, impaired language, and gait abnormalities, autosomal recessive","type":"exact"}],"termid":"MONDO:0100348","terms_by_termid":{"MONDO:0100348":null},"xrefs":{"Monarch":{"xref_id":"0100348"}}}


id: GO:0075215
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of spore encystment on host. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell development","termid":"GO:0060284"},{"relation_name":"regulates","term_name":"spore encystment","termid":"GO:0075214"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"modulation of spore encystment on host","termid":"GO:0075215"}


id: GO:0097029
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which antigen-activated dendritic cells acquire the specialized features of a mature conventional dendritic cell. Mature conventional dendritic cells upregulate the surface expression of MHC molecules, chemokine receptors and adhesion molecules, and increase the number of dendrites (cytoplasmic protrusions) in preparation for migration to lymphoid organs where they present antigen to T cells.","definition_xrefs":["PMID:15845453","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myeloid leukocyte differentiation","termid":"GO:0002573"},{"relation_name":"is_a","term_name":"dendritic cell differentiation","termid":"GO:0097028"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mature conventional dendritic cell differentiation","termid":"GO:0097029"}


id: PBO:0068324
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 25","termid":"PBO:0068324"}


id: GO:1902078
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of lateral motor column neuron migration.","definition_xrefs":["PMID:20711475","GOC:TermGenie","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of lateral motor column neuron migration","termid":"GO:1902076"},{"relation_name":"is_a","term_name":"positive regulation of motor neuron migration","termid":"GO:1905485"},{"relation_name":"positively_regulates","term_name":"lateral motor column neuron migration","termid":"GO:0097477"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of lateral motor column neuron migration","synonyms":[{"name":"activation of lateral motor column neuron migration","type":"narrow"},{"name":"up regulation of lateral motor column neuron migration","type":"exact"},{"name":"up-regulation of lateral motor column neuron migration","type":"exact"},{"name":"upregulation of lateral motor column neuron migration","type":"exact"}],"termid":"GO:1902078"}


id: MONDO:1010023
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Patent ductus venosus that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"},{"relation_name":"is_a","term_name":"portosystemic shunt, non-human animal","termid":"MONDO:1011409"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"patent ductus venosus, non-human animal","secondary_identifiers":["OMIA:001173"],"termid":"MONDO:1010023","xrefs":{"Monarch":{"xref_id":"1010023"}}}


id: MONDO:0008913
data:
  {"annotated_genes":["SJAG_01519"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85376],"is_not":false,"summary":null,"term":"MONDO:0008913"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"},{"relation_name":"is_a","term_name":"cardiac valvular defect","termid":"MONDO:0031323"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01519":null},"genotype_count":0,"is_obsolete":false,"name":"cardiac valvular defect, developmental","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:212093","MESH:C565882","DOID:0080633","MEDGEN:1823949","UMLS:C5774175"],"synonyms":[{"name":"CARDIAC valvular defect, developmental","type":"related"},{"name":"CVDD","type":"related"},{"name":"cardiac valvular defect, developmental","type":"exact"}],"termid":"MONDO:0008913","terms_by_termid":{"MONDO:0008913":null},"xrefs":{"Monarch":{"xref_id":"0008913"}}}


id: GO:0035987
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires the specialized features of an endoderm cell, a cell of the inner of the three germ layers of the embryo.","definition_xrefs":["GOC:yaf","PMID:17624332","CL:0000223"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation","termid":"GO:0030154"},{"relation_name":"part_of","term_name":"endoderm formation","termid":"GO:0001706"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endodermal cell differentiation","synonyms":[{"name":"endoderm cell differentiation","type":"exact"}],"termid":"GO:0035987"}


id: PATO:0000729
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000729 physiological function value (obsolete PATO:0000729)","termid":"PATO:0000729"}


id: GO:0098659
data:
  {"annotated_genes":["SJAG_01353","SJAG_02883","SJAG_01493","SJAG_02968","SJAG_00296","SJAG_05229","SJAG_04830","SJAG_04551","SJAG_04185","SJAG_01090","SJAG_03631","SJAG_02877","SJAG_04246","SJAG_04668"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[114741,67331,74816,92741],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098703"},{"annotations":[88282,114894],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098705"},{"annotations":[113519],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098711"},{"annotations":[113669,91558],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:1905949"},{"annotations":[80298],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098716"},{"annotations":[102461],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1905665"},{"annotations":[70932,72638],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990573"},{"annotations":[113520,104490],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071578"}]},"cv_name":"biological_process","definition":"The directed movement of inorganic cations from outside of a cell, across the plasma membrane and into the cytosol.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inorganic cation transmembrane transport","termid":"GO:0098662"},{"relation_name":"is_a","term_name":"inorganic ion import across plasma membrane","termid":"GO:0099587"}],"gene_count":14,"genes_by_uniquename":{"SJAG_00296":null,"SJAG_01090":null,"SJAG_01353":null,"SJAG_01493":null,"SJAG_02877":null,"SJAG_02883":null,"SJAG_02968":null,"SJAG_03631":null,"SJAG_04185":null,"SJAG_04246":null,"SJAG_04551":null,"SJAG_04668":null,"SJAG_04830":null,"SJAG_05229":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0055085","GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"inorganic cation import across plasma membrane","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"inorganic cation import into cell","type":"exact"}],"termid":"GO:0098659","terms_by_termid":{"GO:0071578":null,"GO:0098703":null,"GO:0098705":null,"GO:0098711":null,"GO:0098716":null,"GO:1905665":null,"GO:1905949":null,"GO:1990573":null}}


id: GO:0050529
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + polyneuridine aldehyde = 16-epivellosimine + CO2 + methanol.","definition_xrefs":["EC:3.1.1.78","RHEA:17501"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic ester hydrolase activity","termid":"GO:0052689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0003674","GO:0016788"],"is_obsolete":false,"name":"polyneuridine-aldehyde esterase activity","secondary_identifiers":["KEGG_REACTION:R05825","MetaCyc:3.1.1.78-RXN"],"synonyms":[{"name":"PNAE activity","type":"related"},{"name":"polyneuridine aldehyde esterase activity","type":"related"},{"name":"polyneuridine aldehyde hydrolase (decarboxylating)","type":"related"}],"termid":"GO:0050529"}


id: GO:0047175
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: sn-3-D-galactosyl-sn-2-acylglycerol + acyl-[acyl-carrier protein] = D-galactosyldiacylglycerol + [acyl-carrier protein].","definition_xrefs":["EC:2.3.1.141","MetaCyc:2.3.1.141-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acyltransferase activity","termid":"GO:0008374"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016746","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"galactosylacylglycerol O-acyltransferase activity","secondary_identifiers":["RHEA:17057"],"synonyms":[{"name":"acyl-ACP:lyso-MGDG acyltransferase activity","type":"related"},{"name":"acyl-acyl-carrier protein: lysomonogalactosyldiacylglycerol acyltransferase activity","type":"related"},{"name":"acyl-acyl-carrier-protein:D-galactosylacylglycerol O-acyltransferase activity","type":"related"}],"termid":"GO:0047175"}


id: GO:1901407
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of phosphorylation of RNA polymerase II C-terminal domain.","definition_xrefs":["GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of phosphorylation of RNA polymerase II C-terminal domain (obsolete GO:1901407)","synonyms":[{"name":"regulation of CTD domain phosphorylation of RNA polymerase II","type":"exact"},{"name":"regulation of generation of II(0) form of RNA polymerase II","type":"exact"},{"name":"regulation of generation of hyperphosphorylated CTD of RNA polymerase II","type":"exact"},{"name":"regulation of hyperphosphorylation of RNA polymerase II C-terminal domain","type":"exact"}],"termid":"GO:1901407"}


id: PBO:0044839
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defensin beta 127","termid":"PBO:0044839"}


id: GO:0030337
data:
  {"annotated_genes":["SJAG_04190","SJAG_01823"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71553,115713],"is_not":false,"summary":null,"term":"GO:0030337"}]},"cv_name":"molecular_function","definition":"An enzyme regulator activity that increases the processivity of polymerization by DNA polymerase, by allowing the polymerase to move rapidly along DNA while remaining topologically bound to it.","definition_xrefs":["PMID:8087839","GOC:mah","PMID:7903401"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme activator activity","termid":"GO:0008047"},{"relation_name":"positively_regulates","term_name":"DNA polymerase activity","termid":"GO:0034061"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01823":null,"SJAG_04190":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"regulates","termid":"GO:0003824"},{"rel_name":"positively_regulates","termid":"GO:0140097"},{"rel_name":"regulates","termid":"GO:0140097"},{"rel_name":"regulates","termid":"GO:0016779"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"positively_regulates","termid":"GO:0003824"},{"rel_name":"regulates","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"positively_regulates","termid":"GO:0016740"},{"rel_name":"positively_regulates","termid":"GO:0016779"},{"rel_name":"is_a","termid":"GO:0030234"}],"interesting_parent_ids":["GO:0140677","GO:0140097","GO:0016779","GO:0098772","GO:0016740","GO:0030234","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"DNA polymerase processivity factor activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"processivity clamp","type":"exact"},{"name":"sliding clamp","type":"narrow"}],"termid":"GO:0030337","terms_by_termid":{"GO:0030337":null}}


id: PBO:0034146
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-in_neoteny_relationship_with","termid":"PBO:0034146"}


id: PBO:0053995
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1317","termid":"PBO:0053995"}


id: PBO:0111902
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SANT subfamily","termid":"PBO:0111902"}


id: PBO:0089153
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HOPS/CORVET complex subunit Vps16","termid":"PBO:0089153"}


id: GO:0008219
data:
  {"annotated_genes":["SJAG_00737","SJAG_03258","SJAG_01527"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96878],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0012502"},{"annotations":[79915,74305],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0043065"}]},"cv_name":"biological_process","definition":"Any biological process that results in permanent cessation of all vital functions of a cell. A cell should be considered dead when any one of the following molecular or morphological criteria is met: (1) the cell has lost the integrity of its plasma membrane; (2) the cell, including its nucleus, has undergone complete fragmentation into discrete bodies (frequently referred to as apoptotic bodies). The cell corpse (or its fragments) may be engulfed by an adjacent cell in vivo, but engulfment of whole cells should not be considered a strict criteria to define cell death as, under some circumstances, live engulfed cells can be released from phagosomes (see PMID:18045538).","definition_xrefs":["PMID:25236395","GOC:mah","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular process","termid":"GO:0009987"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00737":null,"SJAG_01527":null,"SJAG_03258":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell death","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"accidental cell death","type":"related"},{"name":"necrosis","type":"related"}],"termid":"GO:0008219","terms_by_termid":{"GO:0012502":null,"GO:0043065":null}}


id: GO:0051909
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 3-hydroxypropenoate = propynoate + H2O.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete acetylenecarboxylate hydratase activity, producing 3-hydroxypropenoate (obsolete GO:0051909)","synonyms":[{"name":"3-hydroxypropenoate dehydratase activity","type":"exact"},{"name":"acetylenecarboxylate hydratase activity","type":"broad"},{"name":"acetylenemonocarboxylate hydratase activity","type":"broad"},{"name":"alkynoate hydratase activity","type":"broad"}],"termid":"GO:0051909"}


id: PR:O42893
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ntp1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O42893"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neutral trehalase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC660.07","synonyms":[{"name":"Spom972h-ntp1","type":"exact"},{"name":"alpha,alpha-trehalase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"alpha,alpha-trehalose glucohydrolase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O42893"}


id: PBO:0073922
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 16 member 11","termid":"PBO:0073922"}


id: PBO:0018268
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator complex subunit Med14","termid":"PBO:0018268"}


id: GO:0050953
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events required for an organism to receive a sensory light stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensory perception","termid":"GO:0007600"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sensory perception of light stimulus","termid":"GO:0050953"}


id: MOD:00340
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to S-amidino-L-cysteine.","definition_xrefs":["Unimod:440#C","PubMed:9148748","RESID:AA0335"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"S-amidino-L-cysteine","synonyms":[{"name":"(2R)-2-amino-3-(carbamimidoylsulfanyl)propanoic acid","type":"exact"},{"name":"2-amino-3-amidinosulfanylpropanoic acid","type":"exact"},{"name":"2-amino-3-amidinothiopropanoic acid","type":"exact"},{"name":"ACT_SITE Amidino-cysteine intermediate","type":"exact"},{"name":"Amidino","type":"related"},{"name":"S-amidino-L-cysteine","type":"exact"},{"name":"S-amidinocysteine","type":"exact"},{"name":"alpha-amino-beta-amidinothiopropionic acid","type":"exact"},{"name":"amidino","type":"related"},{"name":"beta-(S-isothiourea)alanine","type":"exact"},{"name":"beta-amidinothioalanine","type":"exact"}],"termid":"MOD:00340"}


id: MONDO:0015128
data:
  {"annotated_genes":["SJAG_04270"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87597],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013310"}]},"cv_name":"mondo","definition":"A hormonal disorder that occurs when the adrenal glands fail to release adequate amounts of glucocorticoids (cortisol), mineralocorticoids (aldosterone, 11-deoxycorticosterone), and androgens (dehydroepiandrosterone) to meet physiologic needs, despite release of ACTH from the pituitary.","definition_xrefs":["NCIT:C113172"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"adrenocortical insufficiency","termid":"MONDO:0000004"},{"relation_name":"is_a","term_name":"adrenal gland disorder","termid":"MONDO:0005495"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04270":null},"genotype_count":0,"is_obsolete":false,"name":"primary adrenal insufficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:854614","GARD:19802","Orphanet:101958","MedDRA:10052381","UMLS:C3887896"],"termid":"MONDO:0015128","terms_by_termid":{"MONDO:0013310":null},"xrefs":{"Monarch":{"xref_id":"0015128"}}}


id: PBO:0049488
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H1.10 linker histone","termid":"PBO:0049488"}


id: MONDO:0003466
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A synovial sarcoma characterized by the presence of a spindle cell component only.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spindle cell sarcoma","termid":"MONDO:0002927"},{"relation_name":"is_a","term_name":"monophasic synovial sarcoma","termid":"MONDO:0005067"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"spindle cell synovial sarcoma","secondary_identifiers":["DOID:5487","NCIT:C4277","UMLS:C0334505","ICDO:9041/3","MEDGEN:90795"],"synonyms":[{"name":"synovial sarcoma with spindle cell components","type":"exact"},{"name":"synovial sarcoma, monophasic fibrous","type":"exact"}],"termid":"MONDO:0003466","xrefs":{"Monarch":{"xref_id":"0003466"}}}


id: FYPO:0002374
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the size, shape, or structure of actin cortical patches is abnormal during mitosis.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actin cortical patch morphology","termid":"FYPO:0000791"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0004803"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0004803","FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"abnormal actin cortical patch morphology during mitosis","synonyms":[{"name":"abnormal F-actin patch morphology during mitosis","type":"exact"},{"name":"abnormal actin cortical patch morphology during mitosis during mitotic cell cycle","type":"related"},{"name":"abnormal actin cortical patch morphology during mitosis during vegetative growth","type":"exact"},{"name":"abnormal actin cortical patch morphology during mitotic M phase","type":"related"},{"name":"abnormal actin cortical patch morphology during mitotic nuclear division","type":"exact"},{"name":"abnormal actin patch morphology during mitosis","type":"exact"}],"termid":"FYPO:0002374"}


id: PBO:0029182
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cellular_trehalose_6-phosphate_level_during_heat_shock","termid":"PBO:0029182"}


id: PBO:0091163
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBA domain protein Dph1/Dsk2","termid":"PBO:0091163"}


id: PR:Q10264
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pso2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10264"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA cross-link repair protein pso2/snm1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22A12.01c","synonyms":[{"name":"Spom972h-pso2","type":"exact"}],"termid":"PR:Q10264"}


id: PBO:0016937
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Insulinase Related Protease","termid":"PBO:0016937"}


id: GO:0090614
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5'methyl thioadenosine + H2O = 5'methyl thioinosine + NH3.","definition_xrefs":["RHEA:25025","PMID:23968233"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines","termid":"GO:0016814"},{"relation_name":"is_a","term_name":"deaminase activity","termid":"GO:0019239"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016810","GO:0003824","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"5'-methylthioadenosine deaminase activity","secondary_identifiers":["EC:3.5.4.31"],"termid":"GO:0090614"}


id: PBO:0047121
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 167 member A","termid":"PBO:0047121"}


id: GO:0030844
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of intermediate filament depolymerization.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of intermediate filament depolymerization","termid":"GO:0030842"},{"relation_name":"is_a","term_name":"positive regulation of cytoskeleton organization","termid":"GO:0051495"},{"relation_name":"is_a","term_name":"positive regulation of protein depolymerization","termid":"GO:1901881"},{"relation_name":"positively_regulates","term_name":"intermediate filament depolymerization","termid":"GO:0045106"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0007010"}],"interesting_parent_ids":["GO:0007010","GO:0008150"],"is_obsolete":false,"name":"positive regulation of intermediate filament depolymerization","synonyms":[{"name":"activation of intermediate filament depolymerization","type":"narrow"},{"name":"positive regulation of intermediate filament polymerization and/or depolymerization","type":"broad"},{"name":"stimulation of intermediate filament depolymerization","type":"narrow"},{"name":"up regulation of intermediate filament depolymerization","type":"exact"},{"name":"up-regulation of intermediate filament depolymerization","type":"exact"},{"name":"upregulation of intermediate filament depolymerization","type":"exact"}],"termid":"GO:0030844"}


id: GO:0034870
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2,2-dimethyl-3-pentanone + 1/2 O2 = 1-hydroxy-4,4-dimethylpentan-3-one.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete pinacolone 5-monooxygenase activity (obsolete GO:0034870)","termid":"GO:0034870"}


id: PBO:0045433
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DPY19L2 pseudogene 1","termid":"PBO:0045433"}


id: PBO:0116646
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARF like GTPase 2 binding protein pseudogene 1","termid":"PBO:0116646"}


id: PBO:0062631
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 11 subfamily H member 12","termid":"PBO:0062631"}


id: GO:0060344
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of creating a trabecula in the liver. A trabecula is a tissue element in the form of a small beam, strut or rod.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trabecula formation","termid":"GO:0060343"},{"relation_name":"part_of","term_name":"liver development","termid":"GO:0001889"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"liver trabecula formation","synonyms":[{"name":"liver trabecula biogenesis","type":"related"},{"name":"liver trabeculation","type":"exact"}],"termid":"GO:0060344"}


id: PBO:0071815
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S2 pseudogene 10","termid":"PBO:0071815"}


id: PBO:0074657
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 47","termid":"PBO:0074657"}


id: PBO:0031145
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cell_wall_alpha-glucan_level","termid":"PBO:0031145"}


id: FYECO:0000007
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"The expression level of the gene was increased compared to expressing it from its endogenous promoter in the genome.","definition_xrefs":["PomBase:al"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE FYECO:0000007 overexpression (obsolete FYECO:0000007)","termid":"FYECO:0000007"}


id: PBO:0018047
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochindrial peptide release factor (predicted)","termid":"PBO:0018047"}


id: PBO:0036018
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_invertase_activity_during_glucose_starvation","termid":"PBO:0036018"}


id: GO:2000017
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of determination of dorsal identity.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of developmental process","termid":"GO:0051094"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"is_a","term_name":"regulation of determination of dorsal identity","termid":"GO:2000015"},{"relation_name":"positively_regulates","term_name":"determination of dorsal identity","termid":"GO:0048263"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of determination of dorsal identity","synonyms":[{"name":"positive regulation of determination of adaxial identity","type":"related"}],"termid":"GO:2000017"}


id: PBO:0072702
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RuvB like AAA ATPase 2","termid":"PBO:0072702"}


id: GO:0033144
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of any intracellular steroid hormone receptor signaling pathway.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of intracellular steroid hormone receptor signaling pathway","termid":"GO:0033143"},{"relation_name":"is_a","term_name":"negative regulation of intracellular signal transduction","termid":"GO:1902532"},{"relation_name":"negatively_regulates","term_name":"nuclear receptor-mediated steroid hormone signaling pathway","termid":"GO:0030518"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of intracellular steroid hormone receptor signaling pathway","synonyms":[{"name":"negative regulation of steroid hormone receptor signaling pathway","type":"broad"},{"name":"negative regulation of steroid hormone receptor signalling pathway","type":"broad"}],"termid":"GO:0033144"}


id: PBO:0017708
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"does not functionally complement S. cerevisiae BET2","termid":"PBO:0017708"}


id: PBO:0113557
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oligosaccharyltransferase complex beta subunit Wbp1","termid":"PBO:0113557"}


id: MONDO:0013041
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"atypical hemolytic uremic syndrome with complement gene abnormality","termid":"MONDO:0035290"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"atypical hemolytic-uremic syndrome with I factor anomaly","secondary_identifiers":["MEDGEN:414542","UMLS:C2752039","OMIM:612923","Orphanet:93580","GARD:18553"],"synonyms":[{"name":"AHUS3","type":"related"},{"name":"D-HUS with I factor anomaly","type":"exact"},{"name":"aHUS with I factor anomaly","type":"exact"},{"name":"aHUS, susceptibility to, 3","type":"related"},{"name":"aHUS3","type":"related"},{"name":"atypical HUS with I factor anomaly","type":"exact"},{"name":"hemolytic uremic syndrome, atypical, susceptibility to, 3","type":"related"},{"name":"hemolytic uremic syndrome, atypical, susceptibility to, type 3","type":"exact"},{"name":"hemolytic-uremic syndrome without diarrhea with I factor anomaly","type":"exact"},{"name":"hemolytic-uremic syndrome without diarrhoea with I factor anomaly","type":"exact"},{"name":"susceptibility to atypical hemolytic uremic syndrome 3","type":"related"}],"termid":"MONDO:0013041","xrefs":{"Monarch":{"xref_id":"0013041"}}}


id: MONDO:0007128
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annular erythema","secondary_identifiers":["OMIM:106500","SCTID:200920000","UMLS:C0234906","MEDGEN:68608","MESH:C562461","icd11.foundation:958930318"],"synonyms":[{"name":"annular erythema","type":"exact"}],"termid":"MONDO:0007128","xrefs":{"Monarch":{"xref_id":"0007128"}}}


id: PBO:0000372
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"constitutive","termid":"PBO:0000372"}


id: PBO:0039603
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acidic nuclear phosphoprotein 32 family member C","termid":"PBO:0039603"}


id: PBO:0071421
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L31 pseudogene 27","termid":"PBO:0071421"}


id: PBO:0044662
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defective in cullin neddylation 1 domain containing 4","termid":"PBO:0044662"}


id: FYPO:0001062
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of glutamine into the cell occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal glutamine import","termid":"FYPO:0001061"},{"relation_name":"is_a","term_name":"decreased amino acid import during vegetative growth","termid":"FYPO:0001360"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000138","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"decreased glutamine import","synonyms":[{"name":"decreased L-glutamine import","type":"narrow"},{"name":"decreased glutamine import across plasma membrane","type":"exact"},{"name":"decreased glutamine import during mitotic cell cycle","type":"related"},{"name":"decreased glutamine import during vegetative growth","type":"exact"},{"name":"decreased glutamine import into cell","type":"exact"},{"name":"decreased glutamine uptake","type":"exact"},{"name":"reduced glutamine import","type":"exact"}],"termid":"FYPO:0001062"}


id: MONDO:0019788
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Non-functioning paraganglioma is a rare neuroendocrine tumor arising from neural crest-derived paraganglion cells (most often in the para-aortic region at the level of renal hilia, organ of Zuckerkandl, thoracic paraspinal region, bladder, and carotid body) not associated with catecholamine secretion. These tumors are usually clinically silent and symptoms, if present, are nonspecific and depend on the location of the tumor. Association with certain hereditary cancer-predisposing syndromes, such as multiple endocrine neoplasia, neurofibromatosis type 1 or von Hippel Lindau syndrome, may be observed.","definition_xrefs":["Orphanet:94080"],"direct_ancestors":[{"relation_name":"is_a","term_name":"paraganglioma","termid":"MONDO:0000448"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-secreting paraganglioma","secondary_identifiers":["SCTID:764999002","MEDGEN:1634671","GARD:19248","UMLS:C4707263"],"synonyms":[{"name":"non-functioning paraganglioma","type":"related"}],"termid":"MONDO:0019788","xrefs":{"Monarch":{"xref_id":"0019788"}}}


id: MONDO:0006925
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Infections with bacteria of the family Fusobacteriaceae, in the order Fusobacterales, phylum fusobacteria.","definition_xrefs":["MESH:D045825"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gram-negative bacterial infections","termid":"MONDO:0021678"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Fusobacteriaceae infectious disease","secondary_identifiers":["UMLS:C1258222","MEDGEN:263530"],"synonyms":[{"name":"Fusobacteriaceae caused disease or disorder","type":"exact"},{"name":"Fusobacteriaceae disease or disorder","type":"exact"},{"name":"Fusobacteriaceae infection","type":"related"},{"name":"infection, Fusobacteriaceae","type":"related"},{"name":"infections, Fusobacteriaceae","type":"related"}],"termid":"MONDO:0006925","xrefs":{"Monarch":{"xref_id":"0006925"}}}


id: MONDO:0010477
data:
  {"annotated_genes":["SJAG_00156"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87274],"is_not":false,"summary":null,"term":"MONDO:0010477"}]},"cv_name":"mondo","definition":"The Maat-Kievit-Brunner type of Ohdo syndrome is a rare condition characterized by intellectual disability and distinctive facial features. It has only been reported in males.","direct_ancestors":[{"relation_name":"is_a","term_name":"Ohdo syndrome and variants","termid":"MONDO:0000734"},{"relation_name":"is_a","term_name":"congenital nervous system disorder","termid":"MONDO:0002320"},{"relation_name":"is_a","term_name":"MED12-related intellectual disability syndrome","termid":"MONDO:0100000"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00156":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"blepharophimosis - intellectual disability syndrome, MKB type","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["ICD9:759.89","Orphanet:293707","OMIM:300895","SCTID:699297004","UMLS:C3698541","MEDGEN:785805","GARD:17341"],"synonyms":[{"name":"BMRS, MKB type","type":"exact"},{"name":"BMRS, Maat-Kievit-Brunner type","type":"exact"},{"name":"OHDOX","type":"related"},{"name":"Ohdo syndrome, X-linked","type":"related"},{"name":"Ohdo syndrome, X-linked, X-linked recessive","type":"exact"},{"name":"X-linked Ohdo syndrome","type":"exact"},{"name":"blepharophimosis-intellectual disability syndrome, Maat-Kievit-Brunner type","type":"exact"},{"name":"blepharophimosis-mental retardation syndrome, Maat-Kievit-Brunner type","type":"related"}],"termid":"MONDO:0010477","terms_by_termid":{"MONDO:0010477":null},"xrefs":{"Monarch":{"xref_id":"0010477"}}}


id: MONDO:0032851
data:
  {"annotated_genes":["SJAG_03157"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87204],"is_not":false,"summary":null,"term":"MONDO:0032851"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03157":null},"genotype_count":0,"is_obsolete":false,"name":"intellectual developmental disorder with impaired language and dysmorphic facies","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:618653","UMLS:C5231444","GARD:18520","MEDGEN:1684804"],"synonyms":[{"name":"IDDILF","type":"related"},{"name":"INTELLECTUAL DEVELOPMENTAL DISORDER WITH IMPAIRED LANGUAGE AND DYSMORPHIC FACIES","type":"related"}],"termid":"MONDO:0032851","terms_by_termid":{"MONDO:0032851":null},"xrefs":{"Monarch":{"xref_id":"0032851"}}}


id: PBO:0070595
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 62","termid":"PBO:0070595"}


id: PBO:0000494
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RSC complex subunit Rsc58","termid":"PBO:0000494"}


id: PBO:0043498
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"contactin 5","termid":"PBO:0043498"}


id: SO:0000989
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Small non-coding RNA (59-60 nt long) containing 5' and 3' ends that are predicted to come together to form a stem structure. Identified in the social amoeba Dictyostelium discoideum and localized in the cytoplasm.","definition_xrefs":["PMID:15333696"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ncRNA","termid":"SO:0000655"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"class_II_RNA","synonyms":[{"name":"class II RNA","type":"exact"}],"termid":"SO:0000989"}


id: MONDO:0008438
data:
  {"annotated_genes":["SJAG_01530","SJAG_04566"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86851,86852],"is_not":false,"summary":null,"term":"MONDO:0008438"}]},"cv_name":"mondo","definition":"Autosomal dominant spastic paraplegia type 4 (SPG4) is a form of hereditary spastic paraplegia with high intrafamilial clinical variability, characterized in most cases as a pure phenotype with an adult onset (mainly the 3rd to 5th decade of life, but that can present at any age) of progressive gait impairment due to bilateral lower-limb spasticity and weakness as well as very mild proximal weakness and urinary urgency. In some cases, a complex phenotype is also reported with additional manifestations including cognitive impairment, cerebellar ataxia, epilepsy and neuropathy. A faster disease progression is noted in patients with a later age of onset.","definition_xrefs":["Orphanet:100985"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary spastic paraplegia","termid":"MONDO:0019064"},{"relation_name":"is_a","term_name":"SPAST-related motor disorder","termid":"MONDO:0100523"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01530":null,"SJAG_04566":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"hereditary spastic paraplegia 4","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:401097","MESH:C536865","OMIM:182601","UMLS:C1866855","DOID:0110792","SCTID:723820001","GARD:4925","NCIT:C129981"],"synonyms":[{"name":"FSP2","type":"related"},{"name":"SPAST hereditary spastic paraplegia","type":"exact"},{"name":"SPG4","type":"exact"},{"name":"autosomal dominant spastic paraplegia 4","type":"exact"},{"name":"autosomal dominant spastic paraplegia type 4","type":"exact"},{"name":"familial spastic paraplegia autosomal dominant 2","type":"related"},{"name":"familial spastic paraplegia, autosomal dominant, 2","type":"related"},{"name":"hereditary spastic paraplegia 4","type":"exact"},{"name":"hereditary spastic paraplegia caused by mutation in SPAST","type":"exact"},{"name":"hereditary spastic paraplegia type 4","type":"exact"},{"name":"spastic paraplegia 4","type":"related"},{"name":"spastic paraplegia 4, autosomal dominant","type":"related"}],"termid":"MONDO:0008438","terms_by_termid":{"MONDO:0008438":null},"xrefs":{"Monarch":{"xref_id":"0008438"}}}


id: PR:Q9C0V4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBPB7E8.02 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9C0V4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein PB7E8.02 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBPB7E8.02","synonyms":[{"name":"Spom972h-SPBPB7E8.02","type":"exact"}],"termid":"PR:Q9C0V4"}


id: GO:0046344
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of ecdysteroids, a group of polyhydroxylated ketosteroids which initiate post-embryonic development.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid catabolic process","termid":"GO:0006706"},{"relation_name":"is_a","term_name":"ketone catabolic process","termid":"GO:0042182"},{"relation_name":"is_a","term_name":"hormone catabolic process","termid":"GO:0042447"},{"relation_name":"is_a","term_name":"ecdysteroid metabolic process","termid":"GO:0045455"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629","GO:0044281"],"is_obsolete":false,"name":"ecdysteroid catabolic process","synonyms":[{"name":"ecdysteroid breakdown","type":"exact"},{"name":"ecdysteroid catabolism","type":"exact"},{"name":"ecdysteroid degradation","type":"exact"}],"termid":"GO:0046344"}


id: PBO:0052322
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KIAA1328","termid":"PBO:0052322"}


id: PBO:0030270
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_negative_regulation_of_mitotic_DNA_replication_initiation","termid":"PBO:0030270"}


id: PBO:0081317
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 101","termid":"PBO:0081317"}


id: MONDO:0000273
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A West Nile encephalitis that results in infection located in brain, has material basis in Kunjin virus, a subtype of West Nile Virus, which is transmitted by Culex annulirostris mosquito bite. The infection has symptom fever, has symptom rigor, has symptom headache, has symptom confusion, and has symptom lethargy.","definition_xrefs":["DOID:0050174"],"direct_ancestors":[{"relation_name":"is_a","term_name":"West-Nile encephalitis","termid":"MONDO:0019376"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Kunjin virus infectous disease","synonyms":[{"name":"Kunjin encephalitis","type":"exact"}],"termid":"MONDO:0000273","xrefs":{"Monarch":{"xref_id":"0000273"}}}


id: PR:P41820
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- bfr1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P41820"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"brefeldin A resistance protein Bfr1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC18B5.01c","synonyms":[{"name":"SPCC18B5.01c","type":"related"},{"name":"Spom972h-bfr1","type":"exact"},{"name":"hba2","type":"related"}],"termid":"PR:P41820"}


id: FYPO:0004121
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A transport phenotype observed in the vegetative growth phase of the life cycle in which the import of protein into the nucleus is normal (i.e. indistinguishable from wild type). Import of all proteins or a specific protein may be assayed.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal nuclear import","termid":"FYPO:0000516"},{"relation_name":"is_a","term_name":"normal protein localization to nucleus during vegetative growth","termid":"FYPO:0000838"},{"relation_name":"is_a","term_name":"normal intracellular protein transport during vegetative growth","termid":"FYPO:0005397"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0001320","FYPO:0000138","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal protein import into nucleus during vegetative growth","synonyms":[{"name":"normal nucleocytoplasmic protein import during vegetative growth","type":"related"},{"name":"normal protein import into nucleus during mitotic cell cycle","type":"related"}],"termid":"FYPO:0004121"}


id: FYECO:0000065
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Adenine was absent from the experiment.","definition_xrefs":["PomBase:al"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE FYECO:0000065 absence of adenine (obsolete FYECO:0000065)","termid":"FYECO:0000065"}


id: MONDO:0850049
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"painful legs and moving toes syndrome","secondary_identifiers":["GARD:12706","MEDGEN:1842291","Orphanet:617440","UMLS:C5680388"],"termid":"MONDO:0850049","xrefs":{"Monarch":{"xref_id":"0850049"}}}


id: PBO:0048204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gamma-aminobutyric acid type A receptor subunit beta2","termid":"PBO:0048204"}


id: MONDO:0002780
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete MONDO:0002780 (obsolete MONDO:0002780)","termid":"MONDO:0002780","xrefs":{"Monarch":{"xref_id":"0002780"}}}


id: PBO:0049193
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamate ionotropic receptor AMPA type subunit 4","termid":"PBO:0049193"}


id: FYPO:0004567
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype which the spindle is broken into fragments during the second meiotic nuclear division.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal meiotic spindle","termid":"FYPO:0000734"},{"relation_name":"is_a","term_name":"abnormal spindle morphology","termid":"FYPO:0003607"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0000120"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000054","FYPO:0000120","FYPO:0000002","FYPO:0002399"],"is_obsolete":false,"name":"fragmented spindle during meiosis II","synonyms":[{"name":"fragmented meiotic spindle during meiosis II","type":"exact"},{"name":"fragmented spindle during second meiotic nuclear division","type":"exact"},{"name":"fragmented spindle pole body during mitotic cell cycle","type":"related"},{"name":"spindle fragmentation during meiosis II","type":"exact"}],"termid":"FYPO:0004567"}


id: GO:0097599
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of xylans, homopolysaccharides composed of xylose residues.","definition_xrefs":["ISBN:81-7736-269-0","GOC:jh2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824","GO:0016798"],"is_obsolete":false,"name":"xylanase activity","synonyms":[{"name":"xylosidase activity","type":"related"}],"termid":"GO:0097599"}


id: GO:0033452
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A triplet codon-amino acid adaptor activity that recognizes a GUG codon.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"triplet codon-amino acid adaptor activity","termid":"GO:0030533"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0060090","GO:0003674","GO:0005488","GO:0003723"],"is_obsolete":false,"name":"GUG codon-amino acid adaptor activity","synonyms":[{"name":"GTG codon-amino acid adaptor activity","type":"exact"},{"name":"valine tRNA","type":"related"}],"termid":"GO:0033452"}


id: PBO:0081221
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger MYM-type containing 1","termid":"PBO:0081221"}


id: MOD:00887
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-aspartic acid residue to a methylated aspartic acid, such as aspartic acid 4-methyl ester.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methylated residue","termid":"MOD:00427"},{"relation_name":"is_a","term_name":"modified L-aspartic acid residue","termid":"MOD:00904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"methylated aspartic acid","termid":"MOD:00887"}


id: RO:HOM0000045
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Historical homology that is characterized by topological discordance between a gene tree and a species tree attributable to the phylogenetic sorting of genetic polymorphisms across successive nodes in a species tree.","direct_ancestors":[{"relation_name":"is_a","term_name":"in_historical_homology_relationship_with","termid":"RO:HOM0000007"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"in_hemiplasy_relationship_with","synonyms":[{"name":"hemiplasous to","type":"exact"}],"termid":"RO:HOM0000045"}


id: GO:1903442
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipoic acid stimulus.","definition_xrefs":["GO_REF:0000071","PMID:23232760","GOC:sl","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to fatty acid","termid":"GO:0070542"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to lipoic acid","termid":"GO:1903442"}


id: FYPO:0007426
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the insertion of the newly assembled spindle pole body into the nuclear envelope does not occur.","definition_xrefs":["PomBase:mah","PMID:19487457","PMID:22042620"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic spindle pole body insertion into nuclear envelope","termid":"FYPO:0003567"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"abolished new mitotic spindle pole body insertion into nuclear envelope","synonyms":[{"name":"abnormal establishment of old mitotic spindle pole body localization to nuclear envelope","type":"exact"},{"name":"abolished new mitotic SPB insertion into nuclear envelope","type":"exact"},{"name":"abolished new mitotic spindle pole body insertion into nuclear envelope during mitotic cell cycle","type":"related"},{"name":"abolished new mitotic spindle pole body insertion into nuclear envelope during vegetative growth","type":"exact"}],"termid":"FYPO:0007426"}


id: PBO:0064394
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pregnancy up-regulated nonubiquitous CaM kinase","termid":"PBO:0064394"}


id: PBO:0079267
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetratricopeptide repeat domain 39A","termid":"PBO:0079267"}


id: PBO:0074240
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 51 subunit beta","termid":"PBO:0074240"}


id: PBO:0054814
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2227","termid":"PBO:0054814"}


id: PBO:0001677
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial pyruvate dehydrogenase (lipoamide) kinase Pkp1 (predicted)","termid":"PBO:0001677"}


id: GO:0035127
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process, occurring after embryonic development, by which the anatomical structures of the limb are generated and organized. A limb is an appendage of an animal used for locomotion or grasping.","definition_xrefs":["ISBN:0395825172"],"direct_ancestors":[{"relation_name":"is_a","term_name":"limb morphogenesis","termid":"GO:0035108"},{"relation_name":"is_a","term_name":"post-embryonic appendage morphogenesis","termid":"GO:0035120"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"post-embryonic limb morphogenesis","termid":"GO:0035127"}


id: MONDO:0019346
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Sialidosis type 1 (ST-1) is a very rare lysosomal storage disease, and is the normosomatic form of sialidosis, characterized by gait abnormalities, progressive visual loss, bilateral macular cherry red spots and myoclonic epilepsy and ataxia, that usually presents in the second to third decade of life.","definition_xrefs":["Orphanet:812"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"eye disorder","termid":"MONDO:0005328"},{"relation_name":"is_a","term_name":"sialidosis","termid":"MONDO:0017734"},{"relation_name":"is_a","term_name":"familial mucolipidosis","termid":"MONDO:0031422"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002561"},{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0002561","MONDO:0037792"],"is_obsolete":false,"name":"sialidosis type 1","secondary_identifiers":["GARD:7639","NANDO:1200117","NANDO:2201191","SCTID:34960006","MEDGEN:44174","icd11.foundation:1154773192","UMLS:C0023806","SCTID:723675006"],"synonyms":[{"name":"Normomorphic sialidosis","type":"exact"},{"name":"cherry red spot myoclonus syndrome","type":"related"},{"name":"cherry-red spot-myoclonus syndrome","type":"exact"},{"name":"lipomucopolysaccharidosis","type":"exact"},{"name":"myoclonus cherry red spot syndrome","type":"related"},{"name":"normosomatic sialidosis","type":"exact"},{"name":"sialidosis type I","type":"related"}],"termid":"MONDO:0019346","xrefs":{"Monarch":{"xref_id":"0019346"}}}


id: PBO:0050675
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family A (Hsp70) member 8 pseudogene 2","termid":"PBO:0050675"}


id: MONDO:0005188
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A Kaposi sarcoma that develops after organ transplantation or immunosuppressive treatment.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Kaposi's sarcoma","termid":"MONDO:0005055"},{"relation_name":"is_a","term_name":"nosocomial infection","termid":"MONDO:0043544"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"iatrogenic Kaposi's sarcoma","secondary_identifiers":["NCIT:C35873","UMLS:C1334149","MEDGEN:235203"],"synonyms":[{"name":"iatrogenic Kaposi sarcoma","type":"exact"},{"name":"iatrogenic Kaposi's sarcoma","type":"exact"}],"termid":"MONDO:0005188","xrefs":{"Monarch":{"xref_id":"0005188"}}}


id: GO:0035065
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of the addition of an acetyl group to a histone protein.","definition_xrefs":["GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of histone acetylation (obsolete GO:0035065)","termid":"GO:0035065"}


id: GO:0030380
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an interleukin-17E receptor.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor binding","termid":"GO:0005126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"interleukin-17E receptor binding","synonyms":[{"name":"IL-17E","type":"narrow"},{"name":"interleukin-17E receptor ligand","type":"narrow"}],"termid":"GO:0030380"}


id: PBO:0091844
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-coding RNA, heat shock specific","termid":"PBO:0091844"}


id: GO:0034905
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 5-chloro-4-hydroxy-2-oxopentanate = pyruvate + chloroacetaldehyde.","definition_xrefs":["UM-BBD_reactionID:r1437"],"gene_count":0,"genotype_count":0,"name":"obsolete 5-chloro-4-hydroxy-2-oxopentanate aldolase activity (obsolete GO:0034905)","termid":"GO:0034905"}


id: GO:0180041
data:
  {"annotated_genes":["SJAG_03115"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[103356],"is_not":false,"summary":null,"term":"GO:0180041"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of an alpha-D-mannosyl residue from GDP-mannose into lipid-linked oligosaccharide, forming an alpha-(1->4)-D-mannosyl-D-mannose linkage.","definition_xrefs":["PMID:15635094","PMID:11226175"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycolipid mannosyltransferase activity","termid":"GO:0004376"},{"relation_name":"is_a","term_name":"alpha-1,4-mannosyltransferase activity","termid":"GO:0051751"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03115":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016757","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"glycolipid 1,4-alpha-mannosyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"GPI-MT-I activity","type":"exact"},{"name":"glycosylphosphatidylinositol-mannosyltransferase I","type":"exact"}],"termid":"GO:0180041","terms_by_termid":{"GO:0180041":null}}


id: PBO:0074333
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1","termid":"PBO:0074333"}


id: PBO:0077514
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMEM230 pseudogene 2","termid":"PBO:0077514"}


id: MONDO:0011606
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"achondroplasia","termid":"MONDO:0007037"},{"relation_name":"is_a","term_name":"skeletal dysplasia","termid":"MONDO:0018230"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"baby rattle pelvis dysplasia","secondary_identifiers":["MEDGEN:340083","UMLS:C1853911","OMIM:605838","GARD:9289","MESH:C537794","MESH:C565282"],"synonyms":[{"name":"baby rattle pelvic dysplasia","type":"exact"},{"name":"baby rattle pelvis dysplasia","type":"exact"}],"termid":"MONDO:0011606","xrefs":{"Monarch":{"xref_id":"0011606"}}}


id: PBO:0077811
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tumor protein p53 binding protein 2","termid":"PBO:0077811"}


id: PBO:0050541
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypoxanthine phosphoribosyltransferase 1 pseudogene 2","termid":"PBO:0050541"}


id: GO:0010044
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an aluminum ion stimulus.","definition_xrefs":["GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to metal ion","termid":"GO:0010038"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to aluminum ion","synonyms":[{"name":"response to aluminium ion","type":"exact"},{"name":"response to aluminum","type":"exact"}],"termid":"GO:0010044"}


id: GO:0018419
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a protein structure comprising two or more rings that are interlocked but not covalently joined; resembling the links of a chain.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0065003"],"is_obsolete":false,"name":"protein catenane formation","termid":"GO:0018419"}


id: PBO:0067998
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 300","termid":"PBO:0067998"}


id: MONDO:0018318
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete disorder of asparagine metabolism (obsolete MONDO:0018318)","secondary_identifiers":["Orphanet:391381"],"termid":"MONDO:0018318","xrefs":{"Monarch":{"xref_id":"0018318"}}}


id: MONDO:0014148
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Estrogen resistance syndrome is a rare, genetic endocrine disease characterized by estrogen-receptor insensitivity to estrogens and the presence of elevated estrogen and gonadotropin serum levels. Clinical manifestations include absent breast development and primary amenorrhea in association with multicystic ovaries and/or hypoplastic uterus in female patients, normal or abnormal gonadal development in male patients and markedly delayed bone maturation, persistence of open epiphyses, reduced bone mineral density, and variable tall stature in both sexes. Glucose intolerance, hyperinsulinemia and lipid abnormalities may also be present.","definition_xrefs":["Orphanet:785"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"reproductive system disorder","termid":"MONDO:0005039"},{"relation_name":"is_a","term_name":"endocrine system disorder","termid":"MONDO:0005151"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"estrogen resistance syndrome","secondary_identifiers":["SCTID:724555000","GARD:16548","OMIM:615363","icd11.foundation:1267163286","UMLS:C3809250","MEDGEN:815580"],"synonyms":[{"name":"ESTRR","type":"related"},{"name":"estrogen insensitivity","type":"related"},{"name":"estrogen resistance","type":"related"},{"name":"oestrogen insensitivity","type":"related"},{"name":"oestrogen resistance","type":"related"}],"termid":"MONDO:0014148","xrefs":{"Monarch":{"xref_id":"0014148"}}}


id: MONDO:0017803
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"neurodegenerative disease","termid":"MONDO:0005559"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"primary progressive apraxia of speech","secondary_identifiers":["GARD:21377","MEDGEN:1845725","Orphanet:314566","UMLS:C5848171"],"synonyms":[{"name":"PPAOS","type":"exact"}],"termid":"MONDO:0017803","xrefs":{"Monarch":{"xref_id":"0017803"}}}


id: MONDO:0004180
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A non-metastasizing neoplasm that arises from the organs that comprise the urinary system. Representative examples include renal oncocytoma, bladder inverted papilloma, and urothelial papilloma.","definition_xrefs":["NCIT:C4893"],"direct_ancestors":[{"relation_name":"is_a","term_name":"benign neoplasm","termid":"MONDO:0005165"},{"relation_name":"is_a","term_name":"urinary system neoplasm","termid":"MONDO:0021066"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"benign urinary system neoplasm","secondary_identifiers":["MEDGEN:146348","DOID:731","ICD9:223.9","UMLS:C0686167","ICD9:223.89","MESH:D014571","SCTID:92468007","NCIT:C192667"],"synonyms":[{"name":"benign neoplasm of the urinary tract","type":"exact"},{"name":"benign neoplasm of urinary tract","type":"exact"},{"name":"benign tumor of the urinary tract","type":"exact"},{"name":"benign tumor of urinary tract","type":"exact"},{"name":"benign tumour of the urinary tract","type":"exact"},{"name":"benign tumour of urinary tract","type":"exact"},{"name":"benign urinary system neoplasm","type":"exact"},{"name":"benign urinary tract neoplasm","type":"exact"},{"name":"benign urinary tract tumor","type":"exact"},{"name":"benign urinary tract tumour","type":"exact"},{"name":"neoplasm of urinary system","type":"broad"},{"name":"renal system benign neoplasm","type":"exact"},{"name":"tumor of the urinary system","type":"broad"},{"name":"tumor of urinary tract","type":"broad"},{"name":"tumour of the urinary system","type":"broad"},{"name":"tumour of urinary tract","type":"broad"},{"name":"urinary system benign neoplasm","type":"related"},{"name":"urinary tract neoplasm","type":"broad"}],"termid":"MONDO:0004180","xrefs":{"Monarch":{"xref_id":"0004180"}}}


id: PBO:0006167
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_part","termid":"PBO:0006167"}


id: GO:1903223
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of oxidative stress-induced neuron death.","definition_xrefs":["PMID:23858059","GO_REF:0000058","GOC:bf","GOC:TermGenie","GOC:PARL"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of oxidative stress-induced neuron death (obsolete GO:1903223)","synonyms":[{"name":"activation of neuron death in response to oxidative stress","type":"narrow"},{"name":"activation of neuronal cell death in response to oxidative stress","type":"narrow"},{"name":"activation of oxidative stress-induced neuron death","type":"narrow"},{"name":"positive regulation of neuron death in response to oxidative stress","type":"exact"},{"name":"positive regulation of neuronal cell death in response to oxidative stress","type":"exact"},{"name":"sensitization of neuron to oxidative stress-induced cell death","type":"related"},{"name":"up regulation of neuron death in response to oxidative stress","type":"exact"},{"name":"up regulation of neuronal cell death in response to oxidative stress","type":"exact"},{"name":"up regulation of oxidative stress-induced neuron death","type":"exact"},{"name":"up-regulation of neuron death in response to oxidative stress","type":"exact"},{"name":"up-regulation of neuronal cell death in response to oxidative stress","type":"exact"},{"name":"up-regulation of oxidative stress-induced neuron death","type":"exact"},{"name":"upregulation of neuron death in response to oxidative stress","type":"exact"},{"name":"upregulation of neuronal cell death in response to oxidative stress","type":"exact"},{"name":"upregulation of oxidative stress-induced neuron death","type":"exact"}],"termid":"GO:1903223"}


id: PBO:0083059
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dihydrofolate synthetase, involved in folic acid biosynthesis; catalyzes conversion of dihydropteroate to dihydrofolate in folate coenzyme biosynthesis; FOL3 has a paralog, RMA1, that arose from the whole genome duplication","termid":"PBO:0083059"}


id: PBO:0081167
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein Y-linked","termid":"PBO:0081167"}


id: GO:0009205
data:
  {"annotated_genes":["SJAG_00836","SJAG_03373","SJAG_MIT37","SJAG_00133","SJAG_00605","SJAG_04192","SJAG_00685","SJAG_03925","SJAG_00136","SJAG_06621","SJAG_02887","SJAG_MIT15","SJAG_01298","SJAG_02598","SJAG_02107","SJAG_04422","SJAG_00438","SJAG_05204","SJAG_02009","SJAG_00839","SJAG_02038","SJAG_02105","SJAG_07003","SJAG_04122","SJAG_01310","SJAG_00915","SJAG_MIT09","SJAG_02785","SJAG_06622","SJAG_04048","SJAG_03660","SJAG_03828","SJAG_03114","SJAG_02564","SJAG_00461","SJAG_04495","SJAG_02796","SJAG_00985","SJAG_02369","SJAG_01471","SJAG_00027","SJAG_02135","SJAG_02945","SJAG_03903","SJAG_04849","SJAG_05314","SJAG_04334","SJAG_00542"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[67803,59483,67722],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046034"},{"annotations":[109702,106147,116652,103954,105778,109699,109700,98318,109698,109701,103698,109697,105777,95352,109703,94863,98590,105776,78210,106146],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061621"},{"annotations":[88948],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061613"},{"annotations":[64615,102554,75212],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006183"},{"annotations":[76377,73408],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0045820"},{"annotations":[118306],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:1905707"},{"annotations":[108210,103966,119361,108118,119367,116147,93196,105330,89471,103995,94210,119373,102133,95181,93627,109099,103349],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042776"},{"annotations":[70420],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0006110"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving purine ribonucleoside triphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with triphosphate on the sugar.","definition_xrefs":["ISBN:0198506732","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleoside triphosphate metabolic process","termid":"GO:0009144"},{"relation_name":"is_a","term_name":"ribonucleoside triphosphate metabolic process","termid":"GO:0009199"}],"gene_count":48,"genes_by_uniquename":{"SJAG_00027":null,"SJAG_00133":null,"SJAG_00136":null,"SJAG_00438":null,"SJAG_00461":null,"SJAG_00542":null,"SJAG_00605":null,"SJAG_00685":null,"SJAG_00836":null,"SJAG_00839":null,"SJAG_00915":null,"SJAG_00985":null,"SJAG_01298":null,"SJAG_01310":null,"SJAG_01471":null,"SJAG_02009":null,"SJAG_02038":null,"SJAG_02105":null,"SJAG_02107":null,"SJAG_02135":null,"SJAG_02369":null,"SJAG_02564":null,"SJAG_02598":null,"SJAG_02785":null,"SJAG_02796":null,"SJAG_02887":null,"SJAG_02945":null,"SJAG_03114":null,"SJAG_03373":null,"SJAG_03660":null,"SJAG_03828":null,"SJAG_03903":null,"SJAG_03925":null,"SJAG_04048":null,"SJAG_04122":null,"SJAG_04192":null,"SJAG_04334":null,"SJAG_04422":null,"SJAG_04495":null,"SJAG_04849":null,"SJAG_05204":null,"SJAG_05314":null,"SJAG_06621":null,"SJAG_06622":null,"SJAG_07003":null,"SJAG_MIT09":null,"SJAG_MIT15":null,"SJAG_MIT37":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0055086"],"is_obsolete":false,"name":"purine ribonucleoside triphosphate metabolic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null},"synonyms":[{"name":"purine ribonucleoside triphosphate metabolism","type":"exact"}],"termid":"GO:0009205","terms_by_termid":{"GO:0006110":null,"GO:0006183":null,"GO:0042776":null,"GO:0045820":null,"GO:0046034":null,"GO:0061613":null,"GO:0061621":null,"GO:1905707":null}}


id: PBO:0058282
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4659a","termid":"PBO:0058282"}


id: PBO:0088063
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ubiquitin-protein ligase subunit of the CCR4-NOT complex; with Ubc4p, ubiquitinates nascent polypeptide-associated complex subunits and histone demethyase Jhd2p; CCR4-NOT has roles in transcription regulation, mRNA degradation, and post-transcriptional modifications; regulates levels of DNA Polymerase-{alpha} to promote efficient and accurate DNA replication","termid":"PBO:0088063"}


id: PBO:0110398
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PAGE4 pseudogene 1","termid":"PBO:0110398"}


id: GO:0080067
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 4-methylthiobutyl-desulfoglucosinolate + 3'-phosphoadenosine 5'-phosphosulfate = 4-methylthiobutyl-glucosinolate + adenosine 3',5'-bisphosphate.","definition_xrefs":["PMID:19077143"],"gene_count":0,"genotype_count":0,"name":"obsolete 4-methylthiobutyl-desulfoglucosinolate sulfotransferase activity (obsolete GO:0080067)","termid":"GO:0080067"}


id: PBO:0060320
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myoneurin","termid":"PBO:0060320"}


id: GO:2000106
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of leukocyte apoptotic process.","definition_xrefs":["GOC:BHF","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of apoptotic process","termid":"GO:0042981"},{"relation_name":"regulates","term_name":"leukocyte apoptotic process","termid":"GO:0071887"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of leukocyte apoptotic process","synonyms":[{"name":"regulation of leukocyte apoptosis","type":"narrow"}],"termid":"GO:2000106"}


id: PBO:0051439
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin lambda variable 3-24 (pseudogene)","termid":"PBO:0051439"}


id: PATO:0000717
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000717 viability value (obsolete PATO:0000717)","termid":"PATO:0000717"}


id: PBO:0005022
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4.3.1.16","termid":"PBO:0005022"}


id: GO:0046802
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of an assembled viral particle out of the host cell nucleus by budding and fusion through the nuclear membranes. In this process, enveloped viral particles are formed by budding through the inner nuclear membrane. These perinuclear enveloped particles then fuse with the outer nuclear membrane to deliver a naked capsid into the host cytoplasm.","definition_xrefs":["PMID:9765421","PMID:21494278","PMID:22858153","PMID:9601512","VZ:1952"],"direct_ancestors":[{"relation_name":"is_a","term_name":"exit of virus from host cell nucleus","termid":"GO:0039674"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"exit of virus from host cell nucleus by nuclear egress","secondary_identifiers":["GO:0039676"],"synonyms":[{"name":"capsid egress","type":"exact"},{"name":"egress of viral procapsid from host cell nucleus","type":"related"},{"name":"nuclear egress","type":"exact"},{"name":"nuclear egress of viral procapsid","type":"exact"}],"termid":"GO:0046802"}


id: MONDO:0015305
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Rare endometriosis.","gene_count":0,"genotype_count":0,"name":"obsolete rare endometriosis (obsolete MONDO:0015305)","secondary_identifiers":["ICD10CM:N80.1","ICD10CM:N80.5","ICD10CM:N80.3","Orphanet:137820","ICD10CM:N80.4","SCTID:237117005","ICD10CM:N80.0","ICD10CM:N80.6"],"synonyms":[{"name":"endometriosis outside pelvis","type":"exact"},{"name":"extrapelvic endometriosis","type":"related"},{"name":"rare endometriosis","type":"exact"},{"name":"rare endometriosis (disease)","type":"exact"}],"termid":"MONDO:0015305","xrefs":{"Monarch":{"xref_id":"0015305"}}}


id: PBO:0083463
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified gene LCB4","termid":"PBO:0083463"}


id: PATO:0002078
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a bearer by virtue of the bearer's having an empty space or cavity within.","direct_ancestors":[{"relation_name":"is_a","term_name":"structure, cavities","termid":"PATO:0002014"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hollow","termid":"PATO:0002078"}


id: MONDO:0018185
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete congenital anomaly of the great veins (obsolete MONDO:0018185)","secondary_identifiers":["Orphanet:363189"],"termid":"MONDO:0018185","xrefs":{"Monarch":{"xref_id":"0018185"}}}


id: GO:0004026
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + an alcohol = CoA + an acetyl ester.","definition_xrefs":["EC:2.3.1.84"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acetyltransferase activity","termid":"GO:0016413"},{"relation_name":"is_a","term_name":"alcohol O-acyltransferase activity","termid":"GO:0034318"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674","GO:0016746"],"is_obsolete":false,"name":"alcohol O-acetyltransferase activity","secondary_identifiers":["MetaCyc:ALCOHOL-O-ACETYLTRANSFERASE-RXN","RHEA:17229"],"synonyms":[{"name":"AATASE activity","type":"related"},{"name":"acetyl-CoA:alcohol O-acetyltransferase activity","type":"related"},{"name":"alcohol acetyltransferase activity","type":"related"}],"termid":"GO:0004026"}


id: GO:0036508
data:
  {"annotated_genes":["SJAG_01858"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[67103],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904380"}]},"cv_name":"biological_process","definition":"The removal of one or more alpha 1,2-linked mannose residues from a mannosylated protein.","definition_xrefs":["PMID:21062743","GOC:bf","GOC:PARL","PMID:25092655"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein demannosylation","termid":"GO:0036507"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01858":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein alpha-1,2-demannosylation","references_by_uniquename":{"GO_REF:0000002":null},"synonyms":[{"name":"glycoprotein mannose trimming","type":"related"},{"name":"mannose trimming","type":"broad"}],"termid":"GO:0036508","terms_by_termid":{"GO:1904380":null}}


id: GO:0051170
data:
  {"annotated_genes":["SJAG_02520","SJAG_03299","SJAG_01449","SJAG_01065","SJAG_00968","SJAG_01789","SJAG_02210","SJAG_00383","SJAG_03986","SJAG_03300","SJAG_01083","SJAG_00840","SJAG_02274","SJAG_03048","SJAG_03470","SJAG_00065","SJAG_04366","SJAG_01584","SJAG_01834","SJAG_01185","SJAG_01909","SJAG_04645","SJAG_01013","SJAG_03593","SJAG_00375","SJAG_02998","SJAG_01621","SJAG_01358","SJAG_03959","SJAG_04148","SJAG_00093","SJAG_00586","SJAG_01655","SJAG_03907","SJAG_01328","SJAG_03662","SJAG_01311","SJAG_01374","SJAG_02757","SJAG_03729","SJAG_03453","SJAG_04411","SJAG_03002","SJAG_00471","SJAG_02425","SJAG_03693","SJAG_02592"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[64788],"is_not":false,"summary":null,"term":"GO:0051170"},{"annotations":[106134],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0042308"},{"annotations":[74139,77330,73541,76459,75128,101471],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006607"},{"annotations":[94710,102699,91190],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0042307"},{"annotations":[78831,76694,94624,73190,106653,116104,73397,73080,74595,71684,75512,78155,98153,96456,76060,89254,76026,80770,70743,74416,71947,71198,73010,70405,73994,105380,74115,75820,80382,74848,71920,60483,79971,80519,66435,94328],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006606"},{"annotations":[102871],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006404"}]},"cv_name":"biological_process","definition":"The directed movement of substances into the nucleus.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleocytoplasmic transport","termid":"GO:0006913"}],"gene_count":47,"genes_by_uniquename":{"SJAG_00065":null,"SJAG_00093":null,"SJAG_00375":null,"SJAG_00383":null,"SJAG_00471":null,"SJAG_00586":null,"SJAG_00840":null,"SJAG_00968":null,"SJAG_01013":null,"SJAG_01065":null,"SJAG_01083":null,"SJAG_01185":null,"SJAG_01311":null,"SJAG_01328":null,"SJAG_01358":null,"SJAG_01374":null,"SJAG_01449":null,"SJAG_01584":null,"SJAG_01621":null,"SJAG_01655":null,"SJAG_01789":null,"SJAG_01834":null,"SJAG_01909":null,"SJAG_02210":null,"SJAG_02274":null,"SJAG_02425":null,"SJAG_02520":null,"SJAG_02592":null,"SJAG_02757":null,"SJAG_02998":null,"SJAG_03002":null,"SJAG_03048":null,"SJAG_03299":null,"SJAG_03300":null,"SJAG_03453":null,"SJAG_03470":null,"SJAG_03593":null,"SJAG_03662":null,"SJAG_03693":null,"SJAG_03729":null,"SJAG_03907":null,"SJAG_03959":null,"SJAG_03986":null,"SJAG_04148":null,"SJAG_04366":null,"SJAG_04411":null,"SJAG_04645":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006913"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810","GO:0006913"],"is_obsolete":false,"name":"import into nucleus","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"secondary_identifiers":["GO:1902593"],"synonyms":[{"name":"nuclear import","type":"exact"},{"name":"nuclear translocation","type":"exact"}],"termid":"GO:0051170","terms_by_termid":{"GO:0006404":null,"GO:0006606":null,"GO:0006607":null,"GO:0042307":null,"GO:0042308":null,"GO:0051170":null}}


id: PBO:0070468
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L5 pseudogene 3","termid":"PBO:0070468"}


id: GO:0019281
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of L-methionine from other compounds, including homoserine, via the intermediates O-succinyl-L-homoserine and cystathionine.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-methionine biosynthetic process from L-homoserine via cystathionine","termid":"GO:0019279"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0006790","GO:0044281"],"is_obsolete":false,"name":"L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine","secondary_identifiers":["MetaCyc:MET-SAM-PWY"],"synonyms":[{"name":"L-methionine anabolism from homoserine via O-succinyl-L-homoserine and cystathionine","type":"exact"},{"name":"L-methionine formation from homoserine via O-succinyl-L-homoserine and cystathionine","type":"exact"},{"name":"L-methionine synthesis from homoserine via O-succinyl-L-homoserine and cystathionine","type":"exact"},{"name":"methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine","type":"exact"}],"termid":"GO:0019281"}


id: GO:0034908
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2-chloro-N-isopropylacetanilide + O2 + 2 H+ + NADH = 2-chloro-N-isopropylacetamide + catechol + NAD+.","definition_xrefs":["UM-BBD_reactionID:r0724"],"gene_count":0,"genotype_count":0,"name":"obsolete 2-chloro-N-isopropylacetanilide 1,2-dioxygenase activity (obsolete GO:0034908)","termid":"GO:0034908"}


id: MONDO:0015280
data:
  {"annotated_genes":["SJAG_01181","SJAG_00993","SJAG_03453","SJAG_02342"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85379],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014112"},{"annotations":[85381,85380,85382],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014113"},{"annotations":[85386,85385,85387],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014114"}]},"cv_name":"mondo","definition":"Cardiofaciocutaneous (CFC) syndrome is a RASopathy characterized by craniofacial dysmorphology, congenital heart disease, dermatological abnormalities (most commonly hyperkeratotic skin and sparse, curly hair), growth retardation and intellectual disability.","definition_xrefs":["Orphanet:1340"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"},{"relation_name":"is_a","term_name":"ectodermal dysplasia syndrome","termid":"MONDO:0019287"},{"relation_name":"is_a","term_name":"Noonan syndrome and Noonan-related syndrome","termid":"MONDO:0020297"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00993":null,"SJAG_01181":null,"SJAG_02342":null,"SJAG_03453":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0005267"],"is_obsolete":false,"name":"cardiofaciocutaneous syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:C535579","DOID:0060233","NORD:891","NANDO:2200967","MEDGEN:266149","NANDO:1200462","NCIT:C84617","SCTID:403770008","UMLS:C1275081","OMIMPS:115150","GARD:9146"],"synonyms":[{"name":"CFC","type":"exact"},{"name":"CFC syndrome","type":"exact"},{"name":"cardio-facial-cutaneous syndrome","type":"exact"},{"name":"cardio-facio-cutaneous syndrome","type":"related"},{"name":"cardiofaciocutaneous (CFC) syndrome","type":"exact"},{"name":"cardiofaciocutaneous syndrome","type":"exact"},{"name":"congenital heart defects characteristic facial appearance ectodermal abnormalities and growth failure","type":"related"}],"termid":"MONDO:0015280","terms_by_termid":{"MONDO:0014112":null,"MONDO:0014113":null,"MONDO:0014114":null},"xrefs":{"Monarch":{"xref_id":"0015280"}}}


id: GO:0097561
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A cilium (also called flagellum) found in Giardia species (trophozoite stage). It is nucleated by the right caudal basal body, extending cytoplasmically and exiting at the posterior end of the cell body.","definition_xrefs":["GOC:giardia","PMID:16607022","PMID:5961344","ISBN:9780124260207"],"direct_ancestors":[{"relation_name":"is_a","term_name":"9+2 motile cilium","termid":"GO:0097729"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"right caudal flagellum","synonyms":[{"name":"right caudal cilium","type":"exact"}],"termid":"GO:0097561"}


id: GO:0009406
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete virulence (obsolete GO:0009406)","synonyms":[{"name":"virulence","type":"exact"}],"termid":"GO:0009406"}


id: MONDO:0017027
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete primary interstitial lung disease specific to adulthood (obsolete MONDO:0017027)","secondary_identifiers":["Orphanet:264740"],"synonyms":[{"name":"primary ILD specific to adulthood","type":"exact"}],"termid":"MONDO:0017027","xrefs":{"Monarch":{"xref_id":"0017027"}}}


id: GO:1900229
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of single-species biofilm formation in or on host organism.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of single-species biofilm formation","termid":"GO:1900191"},{"relation_name":"is_a","term_name":"regulation of single-species biofilm formation in or on host organism","termid":"GO:1900228"},{"relation_name":"negatively_regulates","term_name":"single-species biofilm formation in or on host organism","termid":"GO:0044407"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of single-species biofilm formation in or on host organism","synonyms":[{"name":"down regulation of single-species biofilm formation in or on host organism","type":"exact"},{"name":"down-regulation of single-species biofilm formation in or on host organism","type":"exact"},{"name":"downregulation of single-species biofilm formation in or on host organism","type":"exact"},{"name":"inhibition of single-species biofilm formation in or on host organism","type":"narrow"}],"termid":"GO:1900229"}


id: PBO:0063612
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prefoldin subunit 2","termid":"PBO:0063612"}


id: PBO:0044982
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DExH-box helicase 34","termid":"PBO:0044982"}


id: PBO:0086186
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein serine/threonine kinase; required for vesicle formation in autophagy and the cytoplasm-to-vacuole targeting (Cvt) pathway; structurally required for phagophore assembly site formation; forms a complex with Atg13p and Atg17p during autophagy; required for re-phosphorylation of Atg13p during termination of autophagy, following prolonged nitrogen starvation; essential for cell cycle progression from G2/M to G1 under nitrogen starvation","termid":"PBO:0086186"}


id: MONDO:0021289
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A in situ carcinoma that involves the caecum.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"colon carcinoma in situ","termid":"MONDO:0004663"},{"relation_name":"is_a","term_name":"cecum carcinoma","termid":"MONDO:0006029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0004335"],"is_obsolete":false,"name":"carcinoma in situ of cecum","secondary_identifiers":["SCTID:92559007","NCIT:C4594","MEDGEN:83854","UMLS:C0347126"],"synonyms":[{"name":"caecum carcinoma in situ","type":"exact"},{"name":"caecum in situ carcinoma","type":"exact"},{"name":"carcinoma in situ of caecum","type":"exact"},{"name":"carcinoma in situ of the cecum","type":"exact"},{"name":"cecum carcinoma in situ","type":"exact"},{"name":"cecum carcinoma in situ aJCC v6","type":"exact"},{"name":"cecum carcinoma in situ aJCC v7","type":"exact"},{"name":"stage 0 caecum carcinoma","type":"exact"},{"name":"stage 0 cecum carcinoma","type":"exact"}],"termid":"MONDO:0021289","xrefs":{"Monarch":{"xref_id":"0021289"}}}


id: MONDO:0037940
data:
  {"annotated_genes":["SJAG_00488","SJAG_01926","SJAG_04558","SJAG_01253","SJAG_00082","SJAG_03703","SJAG_04706","SJAG_03943","SJAG_04115","SJAG_03007","SJAG_01538","SJAG_04554","SJAG_02016","SJAG_03536","SJAG_02431","SJAG_03785","SJAG_04719","SJAG_03811","SJAG_04882","SJAG_01943","SJAG_00279","SJAG_03088","SJAG_03145","SJAG_01400","SJAG_00244","SJAG_05213","SJAG_02155","SJAG_04409","SJAG_05282","SJAG_01344","SJAG_04856","SJAG_04619","SJAG_00164","SJAG_05182","SJAG_04295","SJAG_02139","SJAG_01722","SJAG_04703","SJAG_01941","SJAG_05175","SJAG_02463","SJAG_05330","SJAG_04613","SJAG_02348","SJAG_00301","SJAG_00365","SJAG_00358"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85677],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012196"},{"annotations":[85692,85693],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007424"},{"annotations":[85905,85906],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011350"},{"annotations":[86209],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011480"},{"annotations":[85859,85860,85858,85857,85861],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011568"},{"annotations":[85634],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014603"},{"annotations":[87100,87099],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010915"},{"annotations":[85615],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014594"},{"annotations":[85988],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014853"},{"annotations":[87674],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011067"},{"annotations":[86971],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012091"},{"annotations":[85675,85676],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010933"},{"annotations":[87109,87110],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013471"},{"annotations":[87375],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013386"},{"annotations":[86162,86163],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014237"},{"annotations":[87077,87078],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013489"},{"annotations":[85383,87612],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010799"},{"annotations":[87125],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0027048"},{"annotations":[85708],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0033258"},{"annotations":[87053,87052],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032911"},{"annotations":[87061],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032917"},{"annotations":[85703,85704,85705],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030058"},{"annotations":[86127],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0033668"},{"annotations":[87431],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030719"},{"annotations":[86934],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0859524"},{"annotations":[86931],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0859525"},{"annotations":[87465],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032740"},{"annotations":[85736],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0033199"},{"annotations":[86607],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032639"},{"annotations":[87495],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032761"},{"annotations":[87498],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032762"},{"annotations":[87470],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0958277"},{"annotations":[87475],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032749"},{"annotations":[85737,85738],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010577"},{"annotations":[86190,86191],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009479"},{"annotations":[87527],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010378"}]},"cv_name":"mondo","definition":"An instance of auditory system disease that is caused by an inherited modification of the individual's genome.","definition_xrefs":["MONDO:patterns/hereditary"],"direct_ancestors":[{"relation_name":"is_a","term_name":"auditory system disorder","termid":"MONDO:0002409"},{"relation_name":"is_a","term_name":"hereditary 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disease","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["SCTID:362991006","UMLS:C1285174","MEDGEN:707712"],"synonyms":[{"name":"auditory system hereditary disorder","type":"exact"},{"name":"hereditary auditory system disease","type":"exact"},{"name":"inherited auditory system 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id: GO:0000381
data:
  {"annotated_genes":["SJAG_04782"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[65213],"is_not":false,"summary":null,"term":"GO:0000381"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of alternative splicing of nuclear mRNAs.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mRNA splicing, via spliceosome","termid":"GO:0048024"},{"relation_name":"regulates","term_name":"alternative mRNA splicing, via spliceosome","termid":"GO:0000380"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04782":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016071"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0016071"],"is_obsolete":false,"name":"regulation of alternative mRNA splicing, via spliceosome","references_by_uniquename":{"GO_REF:0000002":null},"synonyms":[{"name":"regulation of alternative nuclear mRNA splicing, via spliceosome","type":"exact"},{"name":"splice site selection","type":"broad"}],"termid":"GO:0000381","terms_by_termid":{"GO:0000381":null}}


id: GO:1902721
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of prolactin secretion.","definition_xrefs":["GOC:TermGenie","PMID:16159377","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein secretion","termid":"GO:0050709"},{"relation_name":"is_a","term_name":"negative regulation of peptide hormone secretion","termid":"GO:0090278"},{"relation_name":"negatively_regulates","term_name":"prolactin secretion","termid":"GO:0070459"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0006810","GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of prolactin secretion","synonyms":[{"name":"down regulation of prolactin secretion","type":"exact"},{"name":"down-regulation of prolactin secretion","type":"exact"},{"name":"downregulation of prolactin secretion","type":"exact"},{"name":"inhibition of prolactin secretion","type":"narrow"}],"termid":"GO:1902721"}


id: SO:0000060
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"One arm of a compound chromosome.","direct_ancestors":[{"relation_name":"is_a","term_name":"compound_chromosome","termid":"SO:1000042"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"compound_chromosome_arm","synonyms":[{"name":"compound chromosome arm","type":"exact"}],"termid":"SO:0000060"}


id: PBO:0049119
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor 199, pseudogene","termid":"PBO:0049119"}


id: GO:0035250
data:
  {"annotated_genes":["SJAG_00183"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[106089],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0047220"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of a galactose group from UDP-galactose to an acceptor molecule.","definition_xrefs":["PMID:19858195"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glycosyltransferase activity","termid":"GO:0008194"},{"relation_name":"is_a","term_name":"galactosyltransferase activity","termid":"GO:0008378"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00183":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016757","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"UDP-galactosyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0035250","terms_by_termid":{"GO:0047220":null}}


id: GO:0001818
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the rate of production of a cytokine.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytokine production","termid":"GO:0001817"},{"relation_name":"is_a","term_name":"negative regulation of gene expression","termid":"GO:0010629"},{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"negatively_regulates","term_name":"cytokine production","termid":"GO:0001816"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"negative regulation of cytokine production","secondary_identifiers":["GO:0042036","GO:0050710"],"synonyms":[{"name":"down regulation of cytokine biosynthetic process","type":"exact"},{"name":"down regulation of cytokine production","type":"exact"},{"name":"down-regulation of cytokine biosynthetic process","type":"exact"},{"name":"down-regulation of cytokine production","type":"exact"},{"name":"downregulation of cytokine biosynthetic process","type":"exact"},{"name":"downregulation of cytokine production","type":"exact"},{"name":"inhibition of cytokine biosynthetic process","type":"narrow"},{"name":"inhibition of cytokine production","type":"narrow"},{"name":"negative regulation of cytokine anabolism","type":"exact"},{"name":"negative regulation of cytokine biosynthesis","type":"exact"},{"name":"negative regulation of cytokine biosynthetic process","type":"narrow"},{"name":"negative regulation of cytokine formation","type":"exact"},{"name":"negative regulation of cytokine secretion","type":"narrow"},{"name":"negative regulation of cytokine synthesis","type":"exact"}],"termid":"GO:0001818"}


id: PBO:0041110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BSND pseudogene 3","termid":"PBO:0041110"}


id: PBO:0027316
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_duration_of_protein_localization_to_mitotic_spindle","termid":"PBO:0027316"}


id: MONDO:0000467
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Intermittent failure of atrial electrical impulse conduction to the ventricles.","definition_xrefs":["NCIT:C111119"],"direct_ancestors":[{"relation_name":"is_a","term_name":"atrioventricular block","termid":"MONDO:0000465"},{"relation_name":"is_a","term_name":"cardiac rhythm disease","termid":"MONDO:0007263"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"second-degree atrioventricular block","secondary_identifiers":["ICD9:426.13","SCTID:195042002","MEDGEN:75546","UMLS:C0264906","DOID:0050822"],"synonyms":[{"name":"AV block second degree","type":"exact"},{"name":"atrioventricular block second degree","type":"exact"},{"name":"atrioventricular block, second degree","type":"exact"},{"name":"second degree AV block","type":"exact"},{"name":"second degree atrioventricular block","type":"exact"},{"name":"second-degree heart block","type":"exact"}],"termid":"MONDO:0000467","xrefs":{"Monarch":{"xref_id":"0000467"}}}


id: GO:0008881
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-glutamate = D-glutamate.","definition_xrefs":["EC:5.1.1.3","RHEA:12813"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino-acid racemase activity","termid":"GO:0047661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016853"],"is_obsolete":false,"name":"glutamate racemase activity","secondary_identifiers":["KEGG_REACTION:R00260","MetaCyc:GLUTRACE-RXN"],"termid":"GO:0008881"}


id: PBO:0049385
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTF3C6 pseudogene 1","termid":"PBO:0049385"}


id: PBO:0029125
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_saccharopine_dehydrogenase_activity","termid":"PBO:0029125"}


id: SO:0001237
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence feature that corresponds to a single amino acid residue in a polypeptide.","definition_xrefs":["RSC:cb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biological_region","termid":"SO:0001411"},{"relation_name":"part_of","term_name":"polypeptide","termid":"SO:0000104"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amino_acid","secondary_identifiers":["http://en.wikipedia.org/wiki/Amino_acid"],"synonyms":[{"name":"amino acid","type":"exact"}],"termid":"SO:0001237"}


id: PBO:0039429
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anomalous homeobox","termid":"PBO:0039429"}


id: PBO:0029019
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_phosphorylation_during_mitotic_M_phase","termid":"PBO:0029019"}


id: PBO:0042552
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin dependent kinase 15","termid":"PBO:0042552"}


id: MONDO:0044789
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An adenocarcinoma arising from the sweat glands. Most cases present as nodular lesions on the digits, usually in the hands. It is characterized by the presence of epithelial cells in the dermis forming nodules. Cystic structures containing papillary projections are also present. It may recur and metastasize, most commonly to the lungs.","definition_xrefs":["NCIT:C27534"],"direct_ancestors":[{"relation_name":"is_a","term_name":"papillary eccrine carcinoma","termid":"MONDO:0003531"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0005093"],"is_obsolete":false,"name":"digital papillary eccrine carcinoma","secondary_identifiers":["ONCOTREE:ADPA","UMLS:C1367789","DOID:5590","MEDGEN:277955"],"synonyms":[{"name":"aggressive digital papillary adenocarcinoma","type":"exact"},{"name":"digit papillary eccrine carcinoma","type":"exact"},{"name":"digital papillary carcinoma","type":"exact"},{"name":"digital papillary carcinoma of skin","type":"exact"},{"name":"digital papillary eccrine carcinoma","type":"exact"},{"name":"papillary digital eccrine carcinoma","type":"exact"},{"name":"papillary eccrine carcinoma of digit","type":"exact"}],"termid":"MONDO:0044789","xrefs":{"Monarch":{"xref_id":"0044789"}}}


id: SOFP:anticodon
data:
  {"annotation_feature_type":"gene","cv_name":"feature_property","definition":"anticodon coded for by a tRNA transcript feature","definition_xrefs":["so:cjm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"feature_property","termid":"SOFP:feature_property"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anticodon","termid":"SOFP:anticodon"}


id: MONDO:0008086
data:
  {"annotated_genes":["SJAG_04178"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87295],"is_not":false,"summary":null,"term":"MONDO:0008086"}]},"cv_name":"mondo","definition":"An axonal form of hereditary motor and sensory neuropathy distinguished by prominent early sensory loss and later positive sensory phenomena, caused by mutations in SPTLC1.","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary sensory and autonomic neuropathy type 1","termid":"MONDO:0018213"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04178":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0002525","MONDO:0005244","MONDO:0005066"],"is_obsolete":false,"name":"neuropathy, hereditary sensory and autonomic, type 1A","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0070152","GARD:15095","OMIM:162400","UMLS:C5235211","MEDGEN:1716450"],"synonyms":[{"name":"HSAN 1A","type":"related"},{"name":"HSAN1A","type":"exact"},{"name":"HSN 1A","type":"related"},{"name":"SPTLC1 hereditary sensory and autonomic neuropathy type 1","type":"exact"},{"name":"hereditary sensory and autonomic neuropathy type 1 caused by mutation in SPTLC1","type":"exact"},{"name":"hereditary sensory and autonomic neuropathy type 1A","type":"related"},{"name":"hereditary sensory and autonomic neuropathy type IA","type":"exact"},{"name":"neuropathy, hereditary sensory and autonomic, type IA","type":"related"},{"name":"neuropathy, hereditary sensory radicular, autosomal dominant, type 1A","type":"related"},{"name":"neuropathy, hereditary sensory, type 1A","type":"related"}],"termid":"MONDO:0008086","terms_by_termid":{"MONDO:0008086":null},"xrefs":{"Monarch":{"xref_id":"0008086"}}}


id: PBO:0001593
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-fold modifier-specific protease (predicted)","termid":"PBO:0001593"}


id: PBO:0028023
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_14-3-3_protein_binding","termid":"PBO:0028023"}


id: GO:0047928
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-glucose + gibberellin = UDP + gibberellin 2-O-beta-D-glucoside.","definition_xrefs":["MetaCyc:GIBBERELLIN-BETA-GLUCOSYLTRANSFERASE-RXN","EC:2.4.1.176"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glucosyltransferase activity","termid":"GO:0035251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674","GO:0016757"],"is_obsolete":false,"name":"gibberellin beta-D-glucosyltransferase activity","secondary_identifiers":["RHEA:20025"],"synonyms":[{"name":"UDP-glucose:gibberellin 2-O-beta-D-glucosyltransferase activity","type":"related"},{"name":"UDPglucose:gibberellin 2-O-beta-D-glucosyltransferase activity","type":"related"},{"name":"gibberellin b-glucosyltransferase activity","type":"exact"},{"name":"uridine diphosphoglucose-gibberellate 3-O-glucosyltransferase activity","type":"related"},{"name":"uridine diphosphoglucose-gibberellate 7-glucosyltransferase activity","type":"related"}],"termid":"GO:0047928"}


id: GO:0035235
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by glutamate binding to a glutamate receptor on the surface of the target cell, followed by the movement of ions through a channel in the receptor complex, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["ISBN:0198506732","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glutamate receptor signaling pathway","termid":"GO:0007215"},{"relation_name":"is_a","term_name":"ligand-gated ion channel signaling pathway","termid":"GO:1990806"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"ionotropic glutamate receptor signaling pathway","synonyms":[{"name":"ionotropic glutamate receptor signalling pathway","type":"exact"}],"termid":"GO:0035235"}


id: GO:0006984
data:
  {"annotated_genes":["SJAG_02104","SJAG_02703","SJAG_04384","SJAG_03345","SJAG_02318","SJAG_00642","SJAG_01150","SJAG_03501","SJAG_01253","SJAG_04151","SJAG_03302","SJAG_00718","SJAG_04018","SJAG_05304","SJAG_00293","SJAG_05286","SJAG_01307","SJAG_01657","SJAG_04573","SJAG_01585"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[117175],"is_not":false,"summary":null,"term":"GO:0006984"},{"annotations":[91579,112021,106217],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:2000639"},{"annotations":[78723],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:2000640"},{"annotations":[89607,89328,116694,118743,89992,69144,112871,102426,113123,65085,94228,118535,104288,92985,63986],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032933"}]},"cv_name":"biological_process","definition":"The series of molecular signals that conveys information from the endoplasmic reticulum to the nucleus, usually resulting in a change in transcriptional regulation.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular signal transduction","termid":"GO:0035556"}],"gene_count":20,"genes_by_uniquename":{"SJAG_00293":null,"SJAG_00642":null,"SJAG_00718":null,"SJAG_01150":null,"SJAG_01253":null,"SJAG_01307":null,"SJAG_01585":null,"SJAG_01657":null,"SJAG_02104":null,"SJAG_02318":null,"SJAG_02703":null,"SJAG_03302":null,"SJAG_03345":null,"SJAG_03501":null,"SJAG_04018":null,"SJAG_04151":null,"SJAG_04384":null,"SJAG_04573":null,"SJAG_05286":null,"SJAG_05304":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"ER-nucleus signaling pathway","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"ER to nucleus signaling pathway","type":"exact"},{"name":"ER to nucleus signalling pathway","type":"exact"},{"name":"ER-nuclear signaling pathway","type":"exact"},{"name":"ER-nuclear signalling pathway","type":"exact"},{"name":"endoplasmic reticulum to nucleus signaling pathway","type":"exact"},{"name":"endoplasmic reticulum-nuclear signaling pathway","type":"exact"}],"termid":"GO:0006984","terms_by_termid":{"GO:0006984":null,"GO:0032933":null,"GO:2000639":null,"GO:2000640":null}}


id: GO:1905685
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of plasma membrane repair.","definition_xrefs":["GOC:bhm","PMID:22940583","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular component organization","termid":"GO:0051129"},{"relation_name":"is_a","term_name":"negative regulation of wound healing","termid":"GO:0061045"},{"relation_name":"is_a","term_name":"regulation of plasma membrane repair","termid":"GO:1905684"},{"relation_name":"negatively_regulates","term_name":"plasma membrane repair","termid":"GO:0001778"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0061024"},{"rel_name":"regulates","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0008150","GO:0061024"],"is_obsolete":false,"name":"negative regulation of plasma membrane repair","synonyms":[{"name":"down regulation of plasma membrane repair","type":"exact"},{"name":"down-regulation of plasma membrane repair","type":"exact"},{"name":"downregulation of plasma membrane repair","type":"exact"},{"name":"inhibition of plasma membrane repair","type":"narrow"}],"termid":"GO:1905685"}


id: PBO:0017844
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deaminase (predicted)","termid":"PBO:0017844"}


id: PBO:0060793
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit S4","termid":"PBO:0060793"}


id: PBO:0087856
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcriptional activator for GABA-dependent induction of GABA genes; binds to DNA elements found in the promoters of target genes and increases their expression in the presence of GABA (gamma-aminobutyrate); zinc finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type; localized to the nucleus; examples of GABA genes include UGA1, UGA2, and UGA4","termid":"PBO:0087856"}


id: GO:0004212
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete lysosomal cysteine-type endopeptidase (obsolete GO:0004212)","synonyms":[{"name":"lysosomal cysteine-type endopeptidase","type":"exact"}],"termid":"GO:0004212"}


id: PBO:0061871
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"one cut homeobox 3","termid":"PBO:0061871"}


id: MONDO:0009074
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Facial dysmorphism-macrocephaly-myopia-Dandy-Walker malformation syndrome is characterized by Dandy-Walker malformation, severe intellectual deficit, macrocephaly, brachytelephalangy, facial dysmorphism and severe myopia. Three cases have been described. Transmission appears to be autosomal recessive.","definition_xrefs":["Orphanet:1970"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"congenital nervous system disorder","termid":"MONDO:0002320"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"},{"relation_name":"is_a","term_name":"central nervous system malformation","termid":"MONDO:0020022"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0020022"},{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0020022","MONDO:0002320"],"is_obsolete":false,"name":"facial dysmorphism-macrocephaly-myopia-Dandy-Walker malformation syndrome","secondary_identifiers":["OMIM:220219","UMLS:C1857352","MEDGEN:341752","GARD:2222","MESH:C535985"],"synonyms":[{"name":"Dandy-Walker malformation with intellectual disability, macrocephaly, myopia, and BRACHYTELEPHALANGY","type":"related"},{"name":"Dandy-Walker malformation with mental retardation, macrocephaly, myopia, and BRACHYTELEPHALANGY","type":"related"}],"termid":"MONDO:0009074","xrefs":{"Monarch":{"xref_id":"0009074"}}}


id: PBO:0061157
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NmrA like redox sensor 2, pseudogene","termid":"PBO:0061157"}


id: GO:0180032
data:
  {"annotated_genes":["SJAG_00581"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[109783],"is_not":false,"summary":null,"term":"GO:0180032"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: histone H4 N6-acetyl-L-lysine (position 5) + H2O = histone H4 L-lysine (position 5) + acetate. This reaction represents the removal of an acetyl group from lysine at position 5 of the histone H4 protein.","definition_xrefs":["PMID:37459529"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H4K deacetylase activity","termid":"GO:0141051"},{"relation_name":"is_a","term_name":"histone deacetylase activity, hydrolytic mechanism","termid":"GO:0141221"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00581":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019213"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0033558"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016810","GO:0033558","GO:0003674","GO:0019213","GO:0140096","GO:0016787"],"is_obsolete":false,"name":"histone H4K5 deacetylase activity, hydrolytic mechanism","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"histone H4K5 deacetylase activity","type":"broad"}],"termid":"GO:0180032","terms_by_termid":{"GO:0180032":null}}


id: GO:0046931
data:
  {"annotated_genes":["SJAG_01833"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[108073],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051292"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a pore complex. A pore complex is a small opening in a membrane that allows the passage of liquids and/or gases.","definition_xrefs":["GOC:mah","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01833":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0065003"],"is_obsolete":false,"name":"pore complex assembly","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"pore biosynthesis","type":"exact"},{"name":"pore complex biogenesis","type":"related"},{"name":"pore formation","type":"exact"},{"name":"pore-forming toxin activity","type":"related"}],"termid":"GO:0046931","terms_by_termid":{"GO:0051292":null}}


id: GO:0050231
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: carbamoyl phosphate + putrescine = N-carbamoylputrescine + H+ + phosphate.","definition_xrefs":["RHEA:21936","EC:2.1.3.6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxyl- or carbamoyltransferase activity","termid":"GO:0016743"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016741","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"putrescine carbamoyltransferase activity","secondary_identifiers":["MetaCyc:PUTRESCINE-CARBAMOYLTRANSFERASE-RXN","KEGG_REACTION:R01399"],"synonyms":[{"name":"PTCase activity","type":"related"},{"name":"carbamoyl-phosphate:putrescine carbamoyltransferase activity","type":"related"},{"name":"putrescine synthase activity","type":"related"},{"name":"putrescine transcarbamylase activity","type":"related"}],"termid":"GO:0050231"}


id: PBO:0027159
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_interphase_microtubule_nucleation","termid":"PBO:0027159"}


id: GO:0090348
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of the chemical reactions and pathways involving organofluorine compounds, as carried out by individual cells.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of organohalogen metabolic process","termid":"GO:0090347"},{"relation_name":"regulates","term_name":"organofluorine metabolic process","termid":"GO:0090346"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of organofluorine metabolic process","termid":"GO:0090348"}


id: PR:P05511
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPMIT.06 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P05511"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized 91 kDa protein in cob intron (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPMIT.06","synonyms":[{"name":"Spom972h-SPMIT.06","type":"exact"}],"termid":"PR:P05511"}


id: PBO:0088772
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA cleavage and polyadenylation specificity factor complex subunit Iss1","termid":"PBO:0088772"}


id: MONDO:0017261
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete systemic diseases with panuveitis (obsolete MONDO:0017261)","secondary_identifiers":["Orphanet:280933"],"termid":"MONDO:0017261","xrefs":{"Monarch":{"xref_id":"0017261"}}}


id: MONDO:0000794
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A allergy involving a beta-lactam.","definition_xrefs":["MONDO:patterns/allergy"],"gene_count":0,"genotype_count":0,"name":"obsolete beta-lactam allergy (obsolete MONDO:0000794)","secondary_identifiers":["DOID:0060519"],"synonyms":[{"name":"allergy of beta-lactam","type":"exact"},{"name":"beta-lactam allergic disease","type":"exact"}],"termid":"MONDO:0000794","xrefs":{"Monarch":{"xref_id":"0000794"}}}


id: PBO:0089525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U5 snRNP complex ATPase subunit Brr2","termid":"PBO:0089525"}


id: PBO:0074800
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 13E","termid":"PBO:0074800"}


id: PBO:0046079
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 4A1 pseudogene 4","termid":"PBO:0046079"}


id: MONDO:0007716
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Alpha-thalassemia-intellectual deficit syndrome linked to chromosome 16 (ATR-16), a contiguous gene deletion syndrome, is a form of alpha-thalassemia characterized by microcytosis, hypochromia, normal hemoglobin (Hb) level or mild anemia, associated with developmental abnormalities.","definition_xrefs":["Orphanet:98791"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hematologic disorder","termid":"MONDO:0005570"},{"relation_name":"is_a","term_name":"partial deletion of the short arm of chromosome 16","termid":"MONDO:0016894"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"alpha thalassemia-intellectual disability syndrome type 1","secondary_identifiers":["DOID:0110029","MESH:C563050","UMLS:C0795917","DECIPHER:65","NORD:1879","GARD:16862","ICD10CM:D56.0","ICD9:282.49","OMIM:141750","MEDGEN:162892","SCTID:277918006"],"synonyms":[{"name":"ALPHA-thalassemia/intellectual disability syndrome, chromosome 16-related","type":"related"},{"name":"ALPHA-thalassemia/mental retardation syndrome, chromosome 16-related","type":"related"},{"name":"ATR syndrome linked to chromosome 16","type":"exact"},{"name":"ATR syndrome, deletion type","type":"exact"},{"name":"ATR, deletion-type","type":"related"},{"name":"ATR-16 Syndrome","type":"exact"},{"name":"ATR-16 syndrome","type":"exact"},{"name":"Alpha thalassemia-intellectual disability syndrome","type":"exact"},{"name":"Alpha thalassemia-intellectual disability syndrome, deletion type","type":"exact"},{"name":"Alpha thalassemia-mental retardation syndrome","type":"exact"},{"name":"Alpha-thalassemia-intellectual disability syndrome linked to chromosome type 16","type":"exact"},{"name":"Alpha-thalassemia/intellectual disability syndrome, deletion-type","type":"related"},{"name":"Alpha-thalassemia/mental retardation syndrome, deletion-type","type":"related"},{"name":"Haemoglobin H-related intellectual disability","type":"related"},{"name":"Haemoglobin H-related mental retardation","type":"related"},{"name":"Hemoglobin H-related intellectual disability","type":"related"},{"name":"Hemoglobin H-related mental retardation","type":"related"},{"name":"alpha thalassemia-intellectual disability syndrome, deletion type","type":"exact"},{"name":"alpha thalassemia-retardation syndrome","type":"exact"},{"name":"alpha-thalassemia-intellectual disability syndrome linked to chromosome 16","type":"exact"},{"name":"alpha-thalassemia/intellectual disability syndrome, deletion-type","type":"exact"},{"name":"alpha-thalassemia/intellectual disability syndrome, type 1","type":"exact"},{"name":"alpha-thalassemia/mental retardation syndrome, deletion-type","type":"exact"},{"name":"alpha-thalassemia/mental retardation syndrome, type 1","type":"exact"},{"name":"chromosome 16P deletion syndrome","type":"related"},{"name":"intellectual disability with Haemoglobin H","type":"related"},{"name":"intellectual disability with Hemoglobin H","type":"related"},{"name":"mental retardation with Haemoglobin H","type":"related"},{"name":"mental retardation with Hemoglobin H","type":"related"}],"termid":"MONDO:0007716","xrefs":{"Monarch":{"xref_id":"0007716"}}}


id: PBO:0026831
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-curved_elongated_vegetative_cell","termid":"PBO:0026831"}


id: SO:0000256
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A tRNA sequence that has an asparagine anticodon, and a 3' asparagine binding region.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"asparagine_tRNA_primary_transcript","termid":"SO:0000213"},{"relation_name":"is_a","term_name":"tRNA","termid":"SO:0000253"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"asparaginyl_tRNA","synonyms":[{"name":"asparaginyl tRNA","type":"exact"},{"name":"asparaginyl-transfer RNA","type":"exact"},{"name":"asparaginyl-transfer ribonucleic acid","type":"exact"}],"termid":"SO:0000256"}


id: MONDO:0032844
data:
  {"annotated_genes":["SJAG_01166"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87197],"is_not":false,"summary":null,"term":"MONDO:0032844"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"infantile liver failure","termid":"MONDO:0000023"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01166":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0002515"}],"interesting_parent_ids":["MONDO:0002515","MONDO:0004335"],"is_obsolete":false,"name":"infantile liver failure syndrome 3","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:618641","UMLS:C5231437","GARD:16483","MEDGEN:1684678"],"synonyms":[{"name":"ILFS3","type":"related"},{"name":"INFANTILE LIVER FAILURE SYNDROME 3","type":"related"}],"termid":"MONDO:0032844","terms_by_termid":{"MONDO:0032844":null},"xrefs":{"Monarch":{"xref_id":"0032844"}}}


id: RO:0001025
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"a relation between two independent continuants, the target and the location, in which the target is entirely within the location","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"located_in","termid":"RO:0001025"}


id: PR:Q9UTA7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC25B8.11 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UTA7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized transcriptional regulatory protein C25B8.11 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC25B8.11","synonyms":[{"name":"Spom972h-SPAC25B8.11","type":"exact"}],"termid":"PR:Q9UTA7"}


id: GO:0072022
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the descending thin limb over time, from its formation to the mature structure. The descending thin limb is a part of the loop of Henle situated just after the proximal straight tubule (S3). It extends to the tip of the loop of Henle.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"loop of Henle development","termid":"GO:0072070"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"descending thin limb development","termid":"GO:0072022"}


id: PBO:0068716
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4atac small nuclear 5, pseudogene","termid":"PBO:0068716"}


id: GO:0002496
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The hydrolysis of a peptide bond or bonds within a protein contributing to antigen processing and presentation.","definition_xrefs":["PMID:15224092","ISBN:0781735149","GOC:add","PMID:15771591"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proteolysis involved in protein catabolic process","termid":"GO:0051603"},{"relation_name":"part_of","term_name":"antigen processing and presentation of peptide antigen","termid":"GO:0048002"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0030163"}],"interesting_parent_ids":["GO:0008150","GO:0030163"],"is_obsolete":false,"name":"proteolysis associated with antigen processing and presentation","termid":"GO:0002496"}


id: GO:0001918
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a farnesylated protein.","definition_xrefs":["GOC:add","PMID:14555765"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"farnesylated protein binding","termid":"GO:0001918"}


id: PBO:0073868
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 9 member B1 pseudogene 4","termid":"PBO:0073868"}


id: PBO:0046647
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group W member 28","termid":"PBO:0046647"}


id: PBO:0069917
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1209, pseudogene","termid":"PBO:0069917"}


id: PBO:0058037
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4258","termid":"PBO:0058037"}


id: PBO:0083156
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; almost completely overlaps ORF YIL067C","termid":"PBO:0083156"}


id: GO:0070231
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any apoptotic process in a T cell, a type of lymphocyte whose defining characteristic is the expression of a T cell receptor complex.","definition_xrefs":["GOC:mtg_apoptosis","GOC:add","CL:0000084","ISBN:0781765196"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lymphocyte apoptotic process","termid":"GO:0070227"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"T cell apoptotic process","synonyms":[{"name":"T cell apoptosis","type":"narrow"},{"name":"T lymphocyte apoptosis","type":"exact"},{"name":"T-cell apoptosis","type":"exact"},{"name":"T-lymphocyte apoptosis","type":"exact"},{"name":"programmed cell death of T cells by apoptosis","type":"exact"}],"termid":"GO:0070231"}


id: GO:0030132
data:
  {"annotated_genes":["SJAG_00800","SJAG_02805","SJAG_01167","SJAG_00104"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[58326,74704,78455,108641],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030122"}]},"cv_name":"cellular_component","definition":"The coat found on coated pits and the coated vesicles derived from coated pits; comprises clathrin and the AP-2 adaptor complex.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"clathrin coat","termid":"GO:0030118"},{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"},{"relation_name":"part_of","term_name":"clathrin-coated pit","termid":"GO:0005905"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00104":null,"SJAG_00800":null,"SJAG_01167":null,"SJAG_02805":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0005886","GO:0032991"],"is_obsolete":false,"name":"clathrin coat of coated pit","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0030132","terms_by_termid":{"GO:0030122":null}}


id: FYECO:0000291
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Cells were blocked using nonpermissive temperature and subsequently released from the block.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping condition combinations","termid":"FYECO:0000238"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"temperature block and release","termid":"FYECO:0000291"}


id: PBO:0082925
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytochrome oxidase assembly factor; null mutation results in respiratory deficiency with specific loss of cytochrome oxidase activity; functions downstream of assembly factors Mss51p and Coa1p and interacts with assembly factor Shy1p","termid":"PBO:0082925"}


id: GO:1902942
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of voltage-gated chloride channel activity.","definition_xrefs":["GOC:TermGenie","GO_REF:0000059","PMID:22006324","GOC:als"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of voltage-gated chloride channel activity (obsolete GO:1902942)","synonyms":[{"name":"down regulation of voltage gated chloride channel activity","type":"exact"},{"name":"down regulation of voltage-dependent chloride channel activity","type":"exact"},{"name":"down regulation of voltage-gated chloride channel activity","type":"exact"},{"name":"down-regulation of voltage gated chloride channel activity","type":"exact"},{"name":"down-regulation of voltage-dependent chloride channel activity","type":"exact"},{"name":"down-regulation of voltage-gated chloride channel activity","type":"exact"},{"name":"downregulation of voltage gated chloride channel activity","type":"exact"},{"name":"downregulation of voltage-dependent chloride channel activity","type":"exact"},{"name":"downregulation of voltage-gated chloride channel activity","type":"exact"},{"name":"inhibition of voltage gated chloride channel activity","type":"narrow"},{"name":"inhibition of voltage-dependent chloride channel activity","type":"narrow"},{"name":"inhibition of voltage-gated chloride channel activity","type":"narrow"},{"name":"negative regulation of voltage gated chloride channel activity","type":"exact"},{"name":"negative regulation of voltage-dependent chloride channel activity","type":"exact"}],"termid":"GO:1902942"}


id: MONDO:0100024
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"This syndrome is characterized by the onset of seizures between 3 and 20 months of age (peak 6 months). Seizures may be frequent at onset but usually remit within 1 year from the onset. In untreated cases there can be isolated or brief clusters of seizures within the period from onset to remission. A minority of individuals may have epilepsy in later life. Some patients (with PRRT2 mutations) may develop paroxysmal kinesiogenic dyskinesia in later life.","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"neonatal/infantile epilepsy syndrome","termid":"MONDO:0100022"},{"relation_name":"is_a","term_name":"infantile-onset epilepsy","termid":"MONDO:0100207"},{"relation_name":"is_a","term_name":"neonatal/infantile-onset self-limited epilepsy syndrome","termid":"MONDO:0800488"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"self-limited familial infantile epilepsy","synonyms":[{"name":"SeLFIE","type":"exact"},{"name":"self-limited familial and non-familial infantile seizures","type":"exact"}],"termid":"MONDO:0100024","xrefs":{"Monarch":{"xref_id":"0100024"}}}


id: GO:0101028
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the surface tension of a liquid.","definition_xrefs":["PMID:20949060","GOC:sl"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of liquid surface tension (obsolete GO:0101028)","synonyms":[{"name":"positive regulation of surface tension of a liquid","type":"exact"}],"termid":"GO:0101028"}


id: PBO:0078509
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 3","termid":"PBO:0078509"}


id: PBO:0027123
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_phosphorylation_at_Ser/Thr-Pro_site","termid":"PBO:0027123"}


id: PBO:0055861
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LDL receptor related protein 8","termid":"PBO:0055861"}


id: GO:0150087
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A single axon terminal bouton making contact onto two or more dendritic spines protruding from the same dendrite.","definition_xrefs":["PMID:11248111","GOC:aruk","PMID:10586883","PMID:24487234","GOC:bc","PMID:22028887"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multiple synapse bouton","termid":"GO:0150086"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"multiple synapse bouton, contacting single dendrite","synonyms":[{"name":"MSB1","type":"exact"},{"name":"type 1 multi-synapse bouton","type":"exact"},{"name":"type 1 multi-synaptic bouton","type":"exact"},{"name":"type 1 multiple spine synapse bouton","type":"exact"},{"name":"type 1 multiple-synapse bouton","type":"exact"},{"name":"type 1 multisynapse bouton","type":"exact"},{"name":"type 1 multisynaptic bouton","type":"exact"}],"termid":"GO:0150087"}


id: PBO:0043000
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chitinase 3 like 1","termid":"PBO:0043000"}


id: MONDO:0000218
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete preimplantation embryonic lethality (obsolete MONDO:0000218)","secondary_identifiers":["OMIMPS:616814"],"termid":"MONDO:0000218","xrefs":{"Monarch":{"xref_id":"0000218"}}}


id: PBO:0044914
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DGAT2 divergent transcript","termid":"PBO:0044914"}


id: PBO:0064459
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pogo transposable element derived with ZNF domain","termid":"PBO:0064459"}


id: GO:1901315
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of histone H2A K63-linked ubiquitination.","definition_xrefs":["GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of histone H2A K63-linked ubiquitination (obsolete GO:1901315)","synonyms":[{"name":"down regulation of histone H2A K63-linked ubiquitination","type":"exact"},{"name":"down-regulation of histone H2A K63-linked ubiquitination","type":"exact"},{"name":"downregulation of histone H2A K63-linked ubiquitination","type":"exact"},{"name":"inhibition of histone H2A K63-linked ubiquitination","type":"narrow"}],"termid":"GO:1901315"}


id: PBO:0047693
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FLVCR heme transporter 1","termid":"PBO:0047693"}


id: GO:0033854
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-oxoglutarate + L-arogenate = L-glutamate + prephenate.","definition_xrefs":["EC:2.6.1.79","RHEA:22880"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0016769","GO:0003674"],"is_obsolete":false,"name":"glutamate-prephenate aminotransferase activity","secondary_identifiers":["KEGG_REACTION:R07276","MetaCyc:PREPHENATE-TRANSAMINE-RXN"],"synonyms":[{"name":"L-arogenate:2-oxoglutarate aminotransferase activity","type":"related"},{"name":"L-glutamate:prephenate aminotransferase activity","type":"related"},{"name":"PAT","type":"related"},{"name":"prephenate transaminase activity","type":"broad"}],"termid":"GO:0033854"}


id: PBO:0056280
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mannosidase alpha class 2B member 2","termid":"PBO:0056280"}


id: MONDO:0005455
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete cholangiocarcinoma (obsolete MONDO:0005455)","termid":"MONDO:0005455","xrefs":{"Monarch":{"xref_id":"0005455"}}}


id: PBO:0078623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 72","termid":"PBO:0078623"}


id: MONDO:0019063
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"developmental defect during embryogenesis","termid":"MONDO:0019755"},{"relation_name":"excluded_subClassOf","term_name":"obsolete rare circulatory system disease (obsolete MONDO:0020015)","termid":"MONDO:0020015"}],"gene_count":0,"genotype_count":0,"name":"obsolete vascular anomaly (obsolete MONDO:0019063)","secondary_identifiers":["Orphanet:68419"],"synonyms":[{"name":"vascular anomaly or angioma","type":"related"}],"termid":"MONDO:0019063","xrefs":{"Monarch":{"xref_id":"0019063"}}}


id: GO:0106318
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: methane + NADPH + H+ + O2 = methanol + NADP+ + H2O.","definition_xrefs":["RHEA:13641"],"gene_count":0,"genotype_count":0,"name":"obsolete methane monooxygenase NADPH activity (obsolete GO:0106318)","termid":"GO:0106318"}


id: GO:0032120
data:
  {"annotated_genes":["SJAG_00114","SJAG_04275","SJAG_01769","SJAG_02248","SJAG_04010","SJAG_04781","SJAG_04080","SJAG_03536","SJAG_03915","SJAG_02241","SJAG_02169","SJAG_00971","SJAG_02529","SJAG_00826","SJAG_02320","SJAG_04470","SJAG_00663","SJAG_04922","SJAG_04615","SJAG_03746","SJAG_02736","SJAG_03688"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91631,95707,97877,97914,99152,100225,102025,105609,107695,110422,114235,118835,119135,119317],"is_not":false,"summary":null,"term":"GO:0032120"},{"annotations":[91068],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1903024"},{"annotations":[117230],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1903023"},{"annotations":[106333,94843,116273,100440,100160,100159],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0070583"}]},"cv_name":"biological_process","definition":"The process in which the nascent membrane forms at the meiotic outer plaque and grows until closure occurs and forespores, or prospores, are formed.","definition_xrefs":["PMID:27630265","GOC:clt"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"cellular component assembly involved in morphogenesis","termid":"GO:0010927"},{"relation_name":"is_a","term_name":"membrane assembly","termid":"GO:0071709"},{"relation_name":"is_a","term_name":"meiotic cell cycle process","termid":"GO:1903046"},{"relation_name":"part_of","term_name":"ascospore-type prospore assembly","termid":"GO:0031321"}],"gene_count":22,"genes_by_uniquename":{"SJAG_00114":null,"SJAG_00663":null,"SJAG_00826":null,"SJAG_00971":null,"SJAG_01769":null,"SJAG_02169":null,"SJAG_02241":null,"SJAG_02248":null,"SJAG_02320":null,"SJAG_02529":null,"SJAG_02736":null,"SJAG_03536":null,"SJAG_03688":null,"SJAG_03746":null,"SJAG_03915":null,"SJAG_04010":null,"SJAG_04080":null,"SJAG_04275":null,"SJAG_04470":null,"SJAG_04615":null,"SJAG_04781":null,"SJAG_04922":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0030437"}],"interesting_parent_ids":["GO:0008150","GO:0030437","GO:0061024","GO:0044085","GO:0007049"],"is_obsolete":false,"name":"ascospore-type prospore membrane formation","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0099097"],"synonyms":[{"name":"FSM assembly","type":"exact"},{"name":"FSM biosynthesis","type":"exact"},{"name":"FSM formation","type":"exact"},{"name":"ascospore-type prospore membrane assembly","type":"related"},{"name":"forespore membrane biosynthesis","type":"exact"},{"name":"forespore membrane formation","type":"exact"},{"name":"prospore membrane biogenesis","type":"related"}],"termid":"GO:0032120","terms_by_termid":{"GO:0032120":null,"GO:0070583":null,"GO:1903023":null,"GO:1903024":null}}


id: PBO:0071039
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 41","termid":"PBO:0071039"}


id: PATO:0002081
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A broken quality inhering in a bearer by virtue of the bearer's being broken into multiple contiguous wholes.","definition_xrefs":["PATOC:GJM"],"direct_ancestors":[{"relation_name":"is_a","term_name":"broken","termid":"PATO:0001444"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"shattered","termid":"PATO:0002081"}


id: GO:0006525
data:
  {"annotated_genes":["SJAG_00636","SJAG_00635","SJAG_00043","SJAG_00495","SJAG_01592","SJAG_01019","SJAG_00392","SJAG_01461","SJAG_00412","SJAG_04577","SJAG_03398","SJAG_00695"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[78645],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019544"},{"annotations":[70838],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019547"},{"annotations":[113511,78648],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010121"},{"annotations":[98482,110775,106834,118688,70571,78826,102938,111389,112215],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042450"},{"annotations":[76178],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033387"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving arginine, 2-amino-5-(carbamimidamido)pentanoic acid.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-amino acid metabolic process","termid":"GO:1901605"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00043":null,"SJAG_00392":null,"SJAG_00412":null,"SJAG_00495":null,"SJAG_00635":null,"SJAG_00636":null,"SJAG_00695":null,"SJAG_01019":null,"SJAG_01461":null,"SJAG_01592":null,"SJAG_03398":null,"SJAG_04577":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"arginine metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Wikipedia:Arginine"],"synonyms":[{"name":"arginine metabolism","type":"exact"}],"termid":"GO:0006525","terms_by_termid":{"GO:0010121":null,"GO:0019544":null,"GO:0019547":null,"GO:0033387":null,"GO:0042450":null}}


id: GO:0061251
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a mesonephric glomerular epithelial cell over time, from its formation to the mature structure. Mesonephric glomerular epithelial cells are specialized epithelial cells that form part of the mesonephric glomerulus; there are two types, mesonephric glomerular parietal epithelial cells and mesonephric glomerular visceral epithelial cells.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glomerular epithelial cell development","termid":"GO:0072310"},{"relation_name":"part_of","term_name":"mesonephric glomerular epithelial cell differentiation","termid":"GO:0061250"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesonephric glomerular epithelial cell development","termid":"GO:0061251"}


id: PBO:0113315
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in regulation of diacylglycerol lipids levels; deletion causes sensitivity to unfolded protein response-inducing agents","termid":"PBO:0113315"}


id: FYPO:0005274
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which a cell does not execute a meiotic cell cycle phase transition normally.","definition_xrefs":["GO:0044771","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal meiotic cell cycle process","termid":"FYPO:0002739"},{"relation_name":"is_a","term_name":"abnormal cell cycle phase transition","termid":"FYPO:0005273"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0000631"],"is_obsolete":false,"name":"abnormal meiotic cell cycle phase transition","termid":"FYPO:0005274"}


id: PBO:0061514
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NSA2 pseudogene 4","termid":"PBO:0061514"}


id: PBO:0079306
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis-specific transcript, Y-linked 3","termid":"PBO:0079306"}


id: PBO:0090407
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial rhomboid family protease","termid":"PBO:0090407"}


id: PBO:0085638
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in inserting tail-anchored proteins into ER membranes; forms a complex with Get4p; required for efficient mating; involved in shmoo formation and nuclear migration in the pre-zygote; associates with ribosomes","termid":"PBO:0085638"}


id: SO:0000690
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that encodes a polycistronic transcript.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gene","termid":"SO:0000704"},{"relation_name":"transcribed_to","term_name":"polycistronic_transcript","termid":"SO:0000078"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gene_with_polycistronic_transcript","synonyms":[{"name":"gene with polycistronic transcript","type":"exact"}],"termid":"SO:0000690"}


id: MONDO:0033559
data:
  {"annotated_genes":["SJAG_00769"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86212],"is_not":false,"summary":null,"term":"MONDO:0033559"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00769":null},"genotype_count":0,"is_obsolete":false,"name":"intellectual developmental disorder with seizures and language delay","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1740295","OMIM:619000","UMLS:C5436574","GARD:18527"],"synonyms":[{"name":"IDDSELD","type":"related"},{"name":"INTELLECTUAL DEVELOPMENTAL DISORDER WITH SEIZURES AND LANGUAGE DELAY","type":"related"},{"name":"SETD1B-NDD","type":"exact"},{"name":"SETD1B-Related Neurodevelopmental Disorder","type":"exact"},{"name":"SETD1B-related neurodevelopmental disorder","type":"exact"}],"termid":"MONDO:0033559","terms_by_termid":{"MONDO:0033559":null},"xrefs":{"Monarch":{"xref_id":"0033559"}}}


id: PBO:0086440
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative kinase with similarity to the PRK/URK/PANK kinase subfamily; the PRK/URK/PANK subfamily of P-loop kinases is also known as phosphoribulokinase/uridine kinase/bacterial pantothenate kinase","termid":"PBO:0086440"}


id: MONDO:0002682
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplasm that involves a brain ventricle. It may be a primary neoplasm arising from a brain ventricle, a metastasis from a distant anatomic site, or an extension of an invasive neoplasm from an adjacent brain structure.","definition_xrefs":["NCIT:C2937"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"cerebral hemisphere cancer","termid":"MONDO:0002731"},{"relation_name":"is_a","term_name":"brain cancer","termid":"MONDO:0001657"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"cerebral ventricle cancer","secondary_identifiers":["UMLS:C0007798","DOID:3541","ICD9:191.5","SCTID:126958000","MEDGEN:3325","MESH:D002551"],"synonyms":[{"name":"brain neoplasms, intraventricular","type":"exact"},{"name":"brain ventricle cancer","type":"exact"},{"name":"cancer of brain ventricle","type":"exact"},{"name":"cerebral ventricle neoplasm","type":"exact"},{"name":"intraventricular brain neoplasm","type":"exact"},{"name":"intraventricular brain neoplasms","type":"exact"},{"name":"intraventricular brain tumor","type":"exact"},{"name":"intraventricular brain tumour","type":"exact"},{"name":"intraventricular neoplasm of brain","type":"exact"},{"name":"intraventricular neoplasm of the brain","type":"exact"},{"name":"intraventricular neoplasms","type":"exact"},{"name":"intraventricular tumor of brain","type":"exact"},{"name":"intraventricular tumor of the brain","type":"exact"},{"name":"intraventricular tumour of brain","type":"exact"},{"name":"intraventricular tumour of the brain","type":"exact"},{"name":"malignant brain ventricle neoplasm","type":"exact"},{"name":"malignant neoplasm of brain ventricle","type":"exact"}],"termid":"MONDO:0002682","xrefs":{"Monarch":{"xref_id":"0002682"}}}


id: PR:Q9P7S3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ssr3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P7S3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SWI/SNF and RSC complexes subunit ssr3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23G3.10c","synonyms":[{"name":"Spom972h-ssr3","type":"exact"}],"termid":"PR:Q9P7S3"}


id: GO:0071497
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a freezing stimulus, temperatures below 0 degrees Celsius.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to freezing","termid":"GO:0050826"},{"relation_name":"is_a","term_name":"cellular response to cold","termid":"GO:0070417"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to freezing","synonyms":[{"name":"antifreeze activity","type":"related"},{"name":"ice nucleation inhibitor activity","type":"related"}],"termid":"GO:0071497"}


id: MOD:01879
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts two L-cysteine residues, an L-arginine residue, an L-threonine residue and a copper atom to the methanobactin SB2 copper complex.","definition_xrefs":["RESID:AA0555","PubMed:20961038"],"direct_ancestors":[{"relation_name":"is_a","term_name":"copper containing modified residue","termid":"MOD:00742"},{"relation_name":"is_a","term_name":"metal or metal cluster coordinated L-cysteine residue","termid":"MOD:02067"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"methanobactin SB2 copper complex","synonyms":[{"name":"METAL copper [Cu-methanobactin SB2 complex]","type":"exact"},{"name":"[5-(hydroxy[sulfanyl-kappaS]methylene)-3,5-dihydro-4H-imidazol-4-onato-kappaN1][4-(hydroxy[sulfanyl-kappaS]methylene)-1,3-oxazol-5(4H)-onato-kappaN]copper","type":"exact"},{"name":"methanobactin SB2 copper complex","type":"exact"}],"termid":"MOD:01879"}


id: SO:0001771
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A variant that has been found to be associated with disease.","direct_ancestors":[{"relation_name":"is_a","term_name":"variant_phenotype","termid":"SO:0001769"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"disease_associated_variant","synonyms":[{"name":"disease associated variant","type":"exact"}],"termid":"SO:0001771"}


id: MONDO:0007627
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Focal facial dermal dysplasia type I (FFDD1), also known as Brauer syndrome, is a focal facial dysplasia (FFDD) characterized by congenital bitemporal cutis aplasia.","definition_xrefs":["Orphanet:79133"],"direct_ancestors":[{"relation_name":"is_a","term_name":"focal facial dermal dysplasia","termid":"MONDO:0018363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"focal facial dermal dysplasia type I","secondary_identifiers":["UMLS:C5235196","GARD:16524","OMIM:136500","MEDGEN:1718224"],"synonyms":[{"name":"Brauer syndrome","type":"exact"},{"name":"FFDD type I","type":"exact"},{"name":"FFDD, type 1","type":"related"},{"name":"FFDD1","type":"exact"},{"name":"bitemporal aplasia cutis congenita","type":"exact"},{"name":"focal facial dermal dysplasia 1, Brauer type","type":"exact"},{"name":"focal facial dermal dysplasia type 1","type":"exact"},{"name":"hereditary symmetrical aplastic nevi of temples","type":"related"}],"termid":"MONDO:0007627","xrefs":{"Monarch":{"xref_id":"0007627"}}}


id: PBO:0057365
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 548ah","termid":"PBO:0057365"}


id: PBO:0055189
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2613","termid":"PBO:0055189"}


id: MOD:00878
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"dimethyl pimelimidate modification from Unimod - Mechanism of the reaction of imidoesters with amines","definition_xrefs":["URL:http://dx.doi.org/10.1021/ja00877a017","PubMed:7171546","Unimod:456"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"imidoester crosslink dimethyl pimelimidate doubly attached","synonyms":[{"name":"Both ends of crosslink attached to same peptide","type":"related"},{"name":"Xlink:DMP","type":"related"}],"termid":"MOD:00878"}


id: SO:0000183
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region of the gene which is not transcribed.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gene_component_region","termid":"SO:0000842"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non_transcribed_region","synonyms":[{"name":"non transcribed region","type":"exact"},{"name":"non-transcribed sequence","type":"exact"},{"name":"nontranscribed region","type":"exact"},{"name":"nontranscribed sequence","type":"exact"}],"termid":"SO:0000183"}


id: PBO:0087546
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of RNA polymerase III transcription initiation factor complex; one of six subunits of RNA polymerase III transcription initiation factor complex (TFIIIC); part of TFIIIC TauB domain that binds BoxB promoter sites of tRNA and other genes; cooperates with Tfc3p in DNA binding; human homolog is TFIIIC-110","termid":"PBO:0087546"}


id: PBO:0068378
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 175","termid":"PBO:0068378"}


id: MONDO:0009296
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"lysosomal storage disease","termid":"MONDO:0002561"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002561"}],"interesting_parent_ids":["MONDO:0002561","MONDO:0005066"],"is_obsolete":false,"name":"glycoprotein storage disease","secondary_identifiers":["MEDGEN:343516","MESH:C565538","UMLS:C1856275","OMIM:232900","SCTID:7810004"],"synonyms":[{"name":"glycoprotein storage disease","type":"exact"},{"name":"glycoprotein storage disorder","type":"exact"}],"termid":"MONDO:0009296","xrefs":{"Monarch":{"xref_id":"0009296"}}}


id: PBO:0053595
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 622","termid":"PBO:0053595"}


id: PR:O94242
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An aspartate--tRNA ligase, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04267","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aspartate--tRNA ligase, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC736.06","secondary_identifiers":["UniProtKB:O94242"],"synonyms":[{"name":"AspRS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-DARS2","type":"exact"},{"name":"aspartyl-tRNA synthetase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94242"}


id: PBO:0003045
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"maltase alpha-glucosidase Mal1","termid":"PBO:0003045"}


id: GO:0070519
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alpha4-beta1 integrin complex bound to membrane protein CD63, a member of the tetraspan family.","definition_xrefs":["PMID:8757325"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0032991","GO:0005886","GO:0005575"],"is_obsolete":false,"name":"alpha4-beta1 integrin-CD63 complex","synonyms":[{"name":"ITGA4-ITGB1-CD63 complex","type":"narrow"}],"termid":"GO:0070519"}


id: PBO:0042234
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin Y like 6 (pseudogene)","termid":"PBO:0042234"}


id: PBO:0091018
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rab family GTPase Ryh1","termid":"PBO:0091018"}


id: GO:1904979
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of endosome organization.","definition_xrefs":["GOC:pad","GOC:PARL","GO_REF:0000058","GOC:TermGenie","PMID:22511594"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of organelle organization","termid":"GO:0010639"},{"relation_name":"is_a","term_name":"regulation of endosome organization","termid":"GO:1904978"},{"relation_name":"negatively_regulates","term_name":"endosome organization","termid":"GO:0007032"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of endosome organization","synonyms":[{"name":"down regulation of endosome organisation","type":"exact"},{"name":"down regulation of endosome organization","type":"exact"},{"name":"down regulation of endosome organization and biogenesis","type":"related"},{"name":"down-regulation of endosome organisation","type":"exact"},{"name":"down-regulation of endosome organization","type":"exact"},{"name":"down-regulation of endosome organization and biogenesis","type":"related"},{"name":"downregulation of endosome organisation","type":"exact"},{"name":"downregulation of endosome organization","type":"exact"},{"name":"downregulation of endosome organization and biogenesis","type":"related"},{"name":"inhibition of endosome organisation","type":"narrow"},{"name":"inhibition of endosome organization","type":"narrow"},{"name":"inhibition of endosome organization and biogenesis","type":"related"},{"name":"negative regulation of endosome organisation","type":"exact"},{"name":"negative regulation of endosome organization and biogenesis","type":"related"}],"termid":"GO:1904979"}


id: PBO:0077787
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA topoisomerase III alpha","termid":"PBO:0077787"}


id: PBO:0077738
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tenascin XA (pseudogene)","termid":"PBO:0077738"}


id: MONDO:0014101
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any muscular dystrophy-dystroglycanopathy, type A in which the cause of the disease is a mutation in the POMK gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"muscular dystrophy-dystroglycanopathy, type A","termid":"MONDO:0000171"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005336","MONDO:0002320"],"is_obsolete":false,"name":"muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 12","secondary_identifiers":["DOID:0111235","MEDGEN:815294","GARD:15927","OMIM:615249","UMLS:C3808964"],"synonyms":[{"name":"MDDGA12","type":"related"},{"name":"POMK muscular dystrophy-dystroglycanopathy, type A","type":"exact"},{"name":"Walker-Warburg syndrome or muscle-eye-brain disease, POMK-related","type":"related"},{"name":"muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 12","type":"related"},{"name":"muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 12","type":"exact"},{"name":"muscular dystrophy-dystroglycanopathy, type A caused by mutation in POMK","type":"exact"}],"termid":"MONDO:0014101","xrefs":{"Monarch":{"xref_id":"0014101"}}}


id: PBO:0086512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; conserved across S. cerevisiae strains; deletion decreases transcription of downstream gene ALD6; YPL062W is not an essential gene; null mutant shows decrease in terpenoid production; homozygous diploid mutant shows a decrease in glycogen accumulation","termid":"PBO:0086512"}


id: MONDO:1012578
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Achromatopsia that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disorder of orbital region, non-human animal","termid":"MONDO:1011315"},{"relation_name":"is_a","term_name":"vision disorder, non-human animal","termid":"MONDO:1011367"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"achromatopsia, non-human animal","termid":"MONDO:1012578","xrefs":{"Monarch":{"xref_id":"1012578"}}}


id: PBO:0074339
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2","termid":"PBO:0074339"}


id: PBO:0081505
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 408","termid":"PBO:0081505"}


id: PBO:0027115
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_localization_to_shmoo_tip","termid":"PBO:0027115"}


id: PBO:0046916
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 30 member C","termid":"PBO:0046916"}


id: GO:1904330
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of myofibroblast contraction.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:19239477"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of actin filament-based movement","termid":"GO:1903116"},{"relation_name":"is_a","term_name":"regulation of myofibroblast contraction","termid":"GO:1904328"},{"relation_name":"positively_regulates","term_name":"myofibroblast contraction","termid":"GO:1990764"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of myofibroblast contraction","synonyms":[{"name":"activation of MF contraction","type":"narrow"},{"name":"activation of MFB contraction","type":"narrow"},{"name":"activation of myofibroblast contraction","type":"narrow"},{"name":"positive regulation of MF contraction","type":"exact"},{"name":"positive regulation of MFB contraction","type":"exact"},{"name":"up regulation of MF contraction","type":"exact"},{"name":"up regulation of MFB contraction","type":"exact"},{"name":"up regulation of myofibroblast contraction","type":"exact"},{"name":"up-regulation of MF contraction","type":"exact"},{"name":"up-regulation of MFB contraction","type":"exact"},{"name":"up-regulation of myofibroblast contraction","type":"exact"},{"name":"upregulation of MF contraction","type":"exact"},{"name":"upregulation of MFB contraction","type":"exact"},{"name":"upregulation of myofibroblast contraction","type":"exact"}],"termid":"GO:1904330"}


id: PBO:0113252
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Palmitoylated vacuolar membrane-localized casein kinase I isoform; negatively regulates vacuole fusion during hypertonic stress via phosphorylation of Vps41p; shares essential functions with Hrr25p; targeted to vacuole via AP-3 pathway; regulates vesicle fusion in AP-3 pathway","termid":"PBO:0113252"}


id: FYPO:0003755
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype that shows detectable differences from normal at the level of an individual cell, when the cell is in the vegetative growth phase of the cell cycle. In fission yeast, the characteristics of wild type cells of the sequenced strain (972 h-) or the isogenic h+ or h90 strains are regarded as normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"inheres_in","term_name":"vegetative cell phenotype","termid":"FYPO:0001320"},{"relation_name":"is_a","term_name":"vegetative cell phenotype","termid":"FYPO:0001320"},{"relation_name":"is_a","term_name":"abnormal cell phenotype","termid":"FYPO:0003037"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abnormal vegetative cell phenotype","synonyms":[{"name":"abnormal cell phenotype during vegetative growth","type":"exact"},{"name":"abnormal vegetative cell phenotype during mitotic cell cycle","type":"related"},{"name":"abnormal vegetative fission yeast cell phenotype","type":"exact"}],"termid":"FYPO:0003755"}


id: PBO:0029035
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination,_without_cell_division,_multinucleate_cell_with_elongated_germ_tube","termid":"PBO:0029035"}


id: MONDO:0017942
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hendra virus infection is a rare viral infection disorder caused by the Hendra virus characterized by onset of flu-like symptoms (fever, myalgia, headaches, lethargy) approximately one week after having been in close contact with bodily fluids of infected horses. Neurological manifestations (e.g. vertigo, confusion, ataxia) and progressive respiratory failure, leading to death, have also been reported.","definition_xrefs":["Orphanet:324632"],"direct_ancestors":[{"relation_name":"is_a","term_name":"infectious encephalitis","termid":"MONDO:0020067"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hendra virus infection","secondary_identifiers":["UMLS:C4505487","MEDGEN:1388276","GARD:21448"],"synonyms":[{"name":"Hendra henipavirus caused disease or disorder","type":"exact"},{"name":"Hendra henipavirus disease or disorder","type":"exact"},{"name":"Hendra henipavirus infectious disease","type":"exact"}],"termid":"MONDO:0017942","xrefs":{"Monarch":{"xref_id":"0017942"}}}


id: PBO:0036401
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by A. thaliana COQ6 with an S. pombe MTS","termid":"PBO:0036401"}


id: FYPO:0002879
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which transcription does not occur when the cell is subject to glucose starvation. All genes, or a specific subset of genes, may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished transcription","termid":"FYPO:0002877"},{"relation_name":"is_a","term_name":"decreased transcription during glucose starvation","termid":"FYPO:0003120"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000294"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0000294"],"is_obsolete":false,"name":"abolished transcription during glucose starvation","synonyms":[{"name":"abolished glucose deprivation induced gene expression","type":"related"},{"name":"abolished transcription during cellular response to glucose starvation","type":"exact"},{"name":"abolished transcription during glucose depletion","type":"exact"},{"name":"abolished transcription during glucose deprivation","type":"exact"},{"name":"abolished transcription during glucose limitation","type":"related"},{"name":"abolished transcription during glucose starvation during mitotic cell cycle","type":"related"},{"name":"abolished transcription during glucose starvation during vegetative growth","type":"exact"},{"name":"abolished transcription in response to glucose starvation","type":"exact"},{"name":"transcription abolished during glucose starvation","type":"exact"}],"termid":"FYPO:0002879"}


id: PBO:0082429
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Blocked reading frame, contains two in-frame stops in translation; this ORF is conserved, without the stops, in Saccharomyces paradoxus, S. mikatae, and S. bayanus; RNA sequencing data indicate the presence of a transcription unit at this reading frame","termid":"PBO:0082429"}


id: GO:0043687
data:
  {"annotated_genes":["SJAG_03932","SJAG_00795","SJAG_03325","SJAG_02082","SJAG_03733","SJAG_01018","SJAG_04948","SJAG_00033","SJAG_05032","SJAG_00776","SJAG_05297","SJAG_00615","SJAG_02341","SJAG_04011","SJAG_02503","SJAG_00720","SJAG_00878","SJAG_03950","SJAG_01302","SJAG_05977","SJAG_00727","SJAG_03896","SJAG_00604","SJAG_01776","SJAG_02764","SJAG_03843","SJAG_03616"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71431,79320,95632,93230,91794,106809,80753,93352,89979,110643],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000338"},{"annotations":[75322,89589,74586,73107,71737,79937],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045116"},{"annotations":[72838,75950,98082,76184,72728,114952,75796],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016925"},{"annotations":[71085,74575,62145,66495],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032447"}]},"cv_name":"biological_process","definition":"The process of covalently altering one or more amino acids in a protein after the protein has been completely translated and released from the ribosome.","definition_xrefs":["GOC:jsg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification process","termid":"GO:0036211"}],"gene_count":27,"genes_by_uniquename":{"SJAG_00033":null,"SJAG_00604":null,"SJAG_00615":null,"SJAG_00720":null,"SJAG_00727":null,"SJAG_00776":null,"SJAG_00795":null,"SJAG_00878":null,"SJAG_01018":null,"SJAG_01302":null,"SJAG_01776":null,"SJAG_02082":null,"SJAG_02341":null,"SJAG_02503":null,"SJAG_02764":null,"SJAG_03325":null,"SJAG_03616":null,"SJAG_03733":null,"SJAG_03843":null,"SJAG_03896":null,"SJAG_03932":null,"SJAG_03950":null,"SJAG_04011":null,"SJAG_04948":null,"SJAG_05032":null,"SJAG_05297":null,"SJAG_05977":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"post-translational protein modification","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null},"secondary_identifiers":["Wikipedia:Posttranslational_modification","Reactome:R-HSA-597592"],"synonyms":[{"name":"PTM","type":"exact"},{"name":"post-translational amino acid modification","type":"exact"},{"name":"post-translational modification","type":"exact"},{"name":"posttranslational amino acid modification","type":"exact"},{"name":"posttranslational modification","type":"exact"},{"name":"posttranslational protein modification","type":"exact"}],"termid":"GO:0043687","terms_by_termid":{"GO:0000338":null,"GO:0016925":null,"GO:0032447":null,"GO:0045116":null}}


id: _global:regulates_o_results_in_morphogenesis_of
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"This is the combination of the regulates relation with the results_in_morphogenesis_of relation.","definition_xrefs":["GOC:mtg_berkeley_2013"],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulates_morphogenesis_of","secondary_identifiers":["GOREL:0001026"],"termid":"_global:regulates_o_results_in_morphogenesis_of"}


id: MONDO:1012799
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any skeletal dysplasia that occurs in dogs due to FGF4 retrogene insertions (FGF4L1 and/or FGF4L2).","definition_xrefs":["PMID:35205370","OMIA:002133-9615","PMID:29073074"],"direct_ancestors":[{"relation_name":"is_a","term_name":"skeletal dysplasia, non-human animal","termid":"MONDO:1012973"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"skeletal dysplasia, FGF4-retrogene-related, dog","termid":"MONDO:1012799","xrefs":{"Monarch":{"xref_id":"1012799"}}}


id: PBO:0039233
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AKTIP pseudogene 2","termid":"PBO:0039233"}


id: GO:0044139
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the symbiont regulates the increase in its size or mass on or near the cells or tissues of the host organism.","definition_xrefs":["GOC:jl","GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation of growth of symbiont on or near host (obsolete GO:0044139)","termid":"GO:0044139"}


id: PBO:0075197
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nuclear ribonucleoprotein polypeptide G pseudogene 9","termid":"PBO:0075197"}


id: MONDO:0014172
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any azoospermia in which the cause of the disease is a mutation in the NANOS1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spermatogenic failure","termid":"MONDO:0004983"},{"relation_name":"is_a","term_name":"male infertility with teratozoospermia due to single gene mutation","termid":"MONDO:0018394"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"spermatogenic failure 12","secondary_identifiers":["OMIM:615413","UMLS:C3809427","DOID:0070171","MEDGEN:815757","GARD:15960"],"synonyms":[{"name":"NANOS1 azoospermia","type":"exact"},{"name":"SPGF12","type":"related"},{"name":"azoospermia caused by mutation in NANOS1","type":"exact"},{"name":"spermatogenic failure 12","type":"exact"},{"name":"spermatogenic failure type 12","type":"exact"}],"termid":"MONDO:0014172","xrefs":{"Monarch":{"xref_id":"0014172"}}}


id: GO:0062069
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a GARP complex.","definition_xrefs":["PMID:20163565"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex binding","termid":"GO:0044877"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"GARP complex binding","termid":"GO:0062069"}


id: PBO:0063572
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"period circadian regulator 2","termid":"PBO:0063572"}


id: GO:0008107
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: GDP-L-fucose + beta-D-galactosyl-R = GDP + alpha-L-fucosyl-(1,2)-beta-D-galactosyl-R.","definition_xrefs":["RHEA:50664","EC:2.4.1.69"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-(1,2)-fucosyltransferase activity","termid":"GO:0031127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016757","GO:0016740"],"is_obsolete":false,"name":"galactoside 2-alpha-L-fucosyltransferase activity","secondary_identifiers":["Reactome:R-HSA-9036987","MetaCyc:GALACTOSIDE-2-L-FUCOSYLTRANSFERASE-RXN","Reactome:R-HSA-9603983","Reactome:R-HSA-9603982"],"synonyms":[{"name":"GDP fucose-lactose fucosyltransferase activity","type":"related"},{"name":"GDP-L-fucose:lactose fucosyltransferase activity","type":"related"},{"name":"GDP-beta-L-fucose:beta-D-galactosyl-R 2-alpha-L-fucosyltransferase activity","type":"related"},{"name":"H-gene-encoded beta-galactoside alpha-1->2 fucosyltransferase activity","type":"narrow"},{"name":"H-gene-encoded beta-galactoside alpha1->2 fucosyltransferase activity","type":"related"},{"name":"alpha(1,2)-L-fucosyltransferase activity","type":"exact"},{"name":"alpha-(1->2)-L-fucosyltransferase activity","type":"related"},{"name":"alpha-2-L-fucosyltransferase activity","type":"related"},{"name":"alpha-2-fucosyltransferase activity","type":"related"},{"name":"beta-galactoside alpha-1->2 fucosyltransferase activity","type":"related"},{"name":"beta-galactoside alpha1->2 fucosyltransferase activity","type":"related"},{"name":"blood group H alpha-2-fucosyltransferase activity","type":"narrow"},{"name":"blood-group substance H-dependent fucosyltransferase activity","type":"narrow"},{"name":"galactoside 2-L-fucosyltransferase activity","type":"related"},{"name":"guanosine diphospho-L-fucose-lactose fucosyltransferase activity","type":"related"},{"name":"guanosine diphosphofucose-beta-D-galactosyl-alpha-2-L-fucosyltransferase activity","type":"related"},{"name":"guanosine diphosphofucose-galactoside 2-L-fucosyltransferase activity","type":"related"},{"name":"guanosine diphosphofucose-galactosylacetylglucosaminylgalactosyl-glucosylceramide alpha-L-fucosyltransferase activity","type":"related"},{"name":"guanosine diphosphofucose-galactosylacetylglucosaminylgalactosylglucosylceramide alpha-L-fucosyltransferase activity","type":"related"},{"name":"guanosine diphosphofucose-glycoprotein 2-alpha-L-fucosyltransferase activity","type":"related"},{"name":"guanosine diphosphofucose-glycoprotein 2-alpha-fucosyltransferase activity","type":"related"},{"name":"guanosine diphosphofucose-lactose fucosyltransferase activity","type":"related"},{"name":"secretor-type beta-galactoside alpha-1->2 fucosyltransferase activity","type":"narrow"},{"name":"secretor-type beta-galactoside alpha1->2 fucosyltransferase activity","type":"related"}],"termid":"GO:0008107"}


id: PBO:0031603
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_duration_of_mitotic_S_phase","termid":"PBO:0031603"}


id: PBO:0004241
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial inner membrane translocase Oxa102","termid":"PBO:0004241"}


id: PBO:0052388
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin family member 26B","termid":"PBO:0052388"}


id: PBO:0033749
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-progressively_decreasing_vegetative_cell_population_growth_rate","termid":"PBO:0033749"}


id: MONDO:0011846
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"bulimia nervosa","termid":"MONDO:0005452"},{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bulimia nervosa, susceptibility to, 1","secondary_identifiers":["OMIM:607499","UMLS:C1843776","MEDGEN:334832"],"synonyms":[{"name":"BN","type":"related"},{"name":"BULN","type":"related"},{"name":"BULN1","type":"exact"},{"name":"BULN2","type":"related"},{"name":"anorexia nervosa, susceptibility to, 2","type":"related"},{"name":"bulimia nervosa, susceptibility to","type":"broad"},{"name":"bulimia nervosa, susceptibility to, 1","type":"exact"},{"name":"bulimia nervosa, susceptibility to, 2","type":"exact"},{"name":"bulimia nervosa, susceptibility to, type 2","type":"exact"},{"name":"susceptibility to bulimia nervosa 2","type":"exact"}],"termid":"MONDO:0011846","xrefs":{"Monarch":{"xref_id":"0011846"}}}


id: GO:0033911
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the endohydrolysis of 1,4-alpha-D-glucosidic linkages in alpha-D-glucans containing both 1,3- and 1,4-bonds.","definition_xrefs":["EC:3.2.1.61"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016787","GO:0016798"],"is_obsolete":false,"name":"mycodextranase activity","secondary_identifiers":["MetaCyc:3.2.1.61-RXN"],"synonyms":[{"name":"1,3-1,4-alpha-D-glucan 4-glucanohydrolase activity","type":"related"}],"termid":"GO:0033911"}


id: MONDO:0003402
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A non-seminomatous malignant germ cell tumor arising from the testis. It affects infants, young children, and postpubertal males. It is the most frequently seen testicular neoplasm during childhood. The vast majority of patients present with an asymptomatic scrotal mass. The tumor mimics the yolk sac of the embryo and produces alpha-fetoprotein (AFP). It metastasizes to distant anatomic sites. Prognostic factors relate to the clinical stage and the degree of AFP elevation.","definition_xrefs":["NCIT:C8000"],"direct_ancestors":[{"relation_name":"is_a","term_name":"testicular pure germ cell tumor","termid":"MONDO:0002874"},{"relation_name":"is_a","term_name":"testicular non-seminomatous germ cell cancer","termid":"MONDO:0003403"},{"relation_name":"is_a","term_name":"yolk sac tumor","termid":"MONDO:0005744"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"testicular yolk sac tumor","secondary_identifiers":["MEDGEN:79028","ONCOTREE:TYST","UMLS:C0279708","DOID:5344","EFO:1000574"],"synonyms":[{"name":"Orchidoblastoma","type":"related"},{"name":"endodermal sinus neoplasm of testis","type":"related"},{"name":"endodermal sinus neoplasm of the testis","type":"related"},{"name":"endodermal sinus tumor of testis","type":"related"},{"name":"endodermal sinus tumor of the testis","type":"related"},{"name":"endodermal sinus tumour of testis","type":"related"},{"name":"endodermal sinus tumour of the testis","type":"related"},{"name":"endodermal-sinus tumor","type":"related"},{"name":"endodermal-sinus tumour","type":"related"},{"name":"testicular endodermal sinus neoplasm","type":"related"},{"name":"testicular endodermal sinus tumor","type":"related"},{"name":"testicular endodermal sinus tumour","type":"related"},{"name":"testicular yolk Sac neoplasm","type":"exact"},{"name":"testicular yolk sac tumor","type":"exact"},{"name":"testis yolk sac tumor","type":"exact"},{"name":"testis yolk sac tumour","type":"exact"},{"name":"yolk Sac neoplasm of testis","type":"related"},{"name":"yolk Sac neoplasm of the testis","type":"related"},{"name":"yolk Sac tumor of testis","type":"related"},{"name":"yolk Sac tumor of the testis","type":"related"},{"name":"yolk Sac tumour of testis","type":"related"},{"name":"yolk Sac tumour of the testis","type":"related"},{"name":"yolk sac tumor","type":"related"},{"name":"yolk sac tumour","type":"related"}],"termid":"MONDO:0003402","xrefs":{"Monarch":{"xref_id":"0003402"}}}


id: PBO:0061457
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neurotrophin receptor associated death domain, pseudogene","termid":"PBO:0061457"}


id: MONDO:0010144
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Tibial hemimelia is a rare congenital anomaly characterized by deficiency of the tibia with a relatively intact fibula.","definition_xrefs":["Orphanet:93322"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hemimelia","termid":"MONDO:0016240"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"tibial hemimelia","secondary_identifiers":["GARD:8707","UMLS:C0265633","OMIM:275220","MEDGEN:120551","SCTID:79177001","icd11.foundation:1111258427","MESH:C535563"],"synonyms":[{"name":"Thm","type":"related"},{"name":"absence of tibia","type":"related"},{"name":"bilateral absence of the tibia","type":"related"},{"name":"congenital absence of tibia","type":"exact"},{"name":"congenital aplasia and dysplasia of the tibia with intact fibula","type":"exact"},{"name":"congenital longitudinal deficiency of the tibia","type":"exact"},{"name":"tibia, absence of","type":"related"},{"name":"tibial hemimelia","type":"exact"},{"name":"tibial longitudinal meromelia","type":"exact"}],"termid":"MONDO:0010144","xrefs":{"Monarch":{"xref_id":"0010144"}}}


id: GO:0036034
data:
  {"annotated_genes":["SJAG_03421","SJAG_00973"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88557,106015],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:2001178"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a mediator complex. The mediator complex is a protein complex that interacts with the carboxy-terminal domain of the largest subunit of RNA polymerase II and plays an active role in transducing the signal from a transcription factor to the transcriptional machinery. The Saccharomyces complex contains several identifiable subcomplexes: a head domain comprising Srb2, -4, and -5, Med6, -8, and -11, and Rox3 proteins; a middle domain comprising Med1, -4, and -7, Nut1 and -2, Cse2, Rgr1, Soh1, and Srb7 proteins; a tail consisting of Gal11p, Med2p, Pgd1p, and Sin4p; and a regulatory subcomplex comprising Ssn2, -3, and -8, and Srb8 proteins. Metazoan mediator complexes have similar modular structures and include homologs of yeast Srb and Med proteins.","definition_xrefs":["PMID:17641689","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00973":null,"SJAG_03421":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0065003","GO:0044085"],"is_obsolete":false,"name":"mediator complex assembly","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0036034","terms_by_termid":{"GO:2001178":null}}


id: PBO:0056941
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIR9-1 host gene","termid":"PBO:0056941"}


id: PBO:0048130
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fucosyltransferase 10","termid":"PBO:0048130"}


id: MONDO:1012045
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"cerebellar cortical atrophy, non-human animal","termid":"MONDO:1011836"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cerebellar cortical atrophy, dog","secondary_identifiers":["OMIA:000177-9615"],"termid":"MONDO:1012045","xrefs":{"Monarch":{"xref_id":"1012045"}}}


id: MONDO:0011963
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Joubert syndrome in which the cause of the disease is a mutation in the TMEM216 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Joubert syndrome with oculorenal defect","termid":"MONDO:0009480"},{"relation_name":"is_a","term_name":"Joubert syndrome","termid":"MONDO:0018772"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0020022"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0006025","MONDO:0020022"],"is_obsolete":false,"name":"Joubert syndrome 2","secondary_identifiers":["MEDGEN:334114","OMIM:608091","UMLS:C1842577","GARD:10167","MESH:C536294","DOID:0110988"],"synonyms":[{"name":"CORS2","type":"exact"},{"name":"Cerebellooculorenal syndrome 2","type":"related"},{"name":"JBTS2","type":"exact"},{"name":"Joubert syndrome 2","type":"exact"},{"name":"Joubert syndrome caused by mutation in TMEM216","type":"exact"},{"name":"Joubert syndrome type 2","type":"exact"},{"name":"TMEM216 Joubert syndrome","type":"exact"},{"name":"cerebellooculorenal syndrome 2","type":"exact"}],"termid":"MONDO:0011963","xrefs":{"Monarch":{"xref_id":"0011963"}}}


id: GO:0048650
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which individuals, having the potential to develop any of several distinct developmental paths, have their individual developmental fate determined in response to environmental cues. Individuals with distinct developmental fates perform different functions in a colony of social insects.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"caste determination","termid":"GO:0048648"},{"relation_name":"is_a","term_name":"polyphenic determination, influence by environmental factors","termid":"GO:0048651"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"caste determination, influence by environmental factors","termid":"GO:0048650"}


id: PBO:0079628
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme E2 Q1","termid":"PBO:0079628"}


id: GO:0019417
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting the addition of oxygen to elemental sulfur.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur compound metabolic process","termid":"GO:0006790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0006790","GO:0008150"],"is_obsolete":false,"name":"sulfur oxidation","synonyms":[{"name":"sulphur oxidation","type":"exact"}],"termid":"GO:0019417"}


id: PBO:0030133
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cellular_zinc_level","termid":"PBO:0030133"}


id: GO:0051359
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The formation of the fluorescent protein FP611 chromophore cross-link from the alpha-carboxyl carbon of residue n, a methionine, to the alpha-amino nitrogen of residue n+2, a glycine, and a dehydration to form a double bond to the alpha-amino nitrogen of residue n+1. This cross-linking is coupled with a dehydrogenation of residue n+1 to form a double bond between the alpha and beta carbons. This modification is found in the GFP-like fluorescent chromoprotein from the sea anemone Entacmaea quadricolor.","definition_xrefs":["PDB:1XQM","PMID:12909624","PMID:15542608","RESID:AA0379","PMID:10852900","PDB:1UIS","PMID:12185250"],"gene_count":0,"genotype_count":0,"name":"obsolete peptide cross-linking via 2-imino-methionine 5-imidazolinone glycine (obsolete GO:0051359)","synonyms":[{"name":"biosynthesis of protein-protein cross-link via 2-imino-methionine 5-imidazolinone glycine","type":"exact"},{"name":"biosynthetic process of protein-protein cross-link via 2-imino-methionine 5-imidazolinone glycine","type":"exact"}],"termid":"GO:0051359"}


id: GO:0047772
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: carboxymethoxysuccinate = fumarate + glycolate.","definition_xrefs":["EC:4.2.99.12","RHEA:12336"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity","termid":"GO:0016835"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"carboxymethyloxysuccinate lyase activity","secondary_identifiers":["KEGG_REACTION:R01336","MetaCyc:CARBOXYMETHYLOXYSUCCINATE-LYASE-RXN"],"synonyms":[{"name":"carboxymethyloxysuccinate glycolate-lyase (fumarate-forming)","type":"related"},{"name":"carboxymethyloxysuccinate glycolate-lyase activity","type":"related"}],"termid":"GO:0047772"}


id: PBO:0088113
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Vacuolar aspartate and glutamate exporter; member of a family of seven genes (AVT1-7) related to vesicular GABA-glycine transporters; involved in compartmentalizing acidic amino acids in response to nitrogen starvation; AVT6 has a paralog, AVT5, that arose from the whole genome duplication","termid":"PBO:0088113"}


id: MONDO:0000029
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete corticosterone methyloxidase deficiency (obsolete MONDO:0000029)","termid":"MONDO:0000029","xrefs":{"Monarch":{"xref_id":"0000029"}}}


id: GO:0050587
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: chloride + O2 = chlorite.","definition_xrefs":["EC:1.13.11.49","RHEA:21404"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"chlorite O2-lyase activity","secondary_identifiers":["KEGG_REACTION:R05721","MetaCyc:1.13.11.49-RXN","UM-BBD_reactionID:r0982","GO:0030065"],"synonyms":[{"name":"chloride:oxygen oxidoreductase activity","type":"related"},{"name":"chlorite dismutase activity","type":"related"}],"termid":"GO:0050587"}


id: PBO:0072211
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S18 pseudogene 10","termid":"PBO:0072211"}


id: PBO:0061426
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NQO2 antisense RNA 1","termid":"PBO:0061426"}


id: PBO:0060901
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuralized E3 ubiquitin protein ligase 4","termid":"PBO:0060901"}


id: GO:0018164
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The formation of a covalent cross-link between DNA and a peptidyl-threonine residue by the formation of O-(phospho-5'-DNA)-L-threonine.","definition_xrefs":["RESID:AA0255"],"gene_count":0,"genotype_count":0,"name":"obsolete protein-DNA covalent cross-linking via peptidyl-threonine (obsolete GO:0018164)","synonyms":[{"name":"DNA-protein covalent cross-linking via peptidyl-threonine","type":"exact"}],"termid":"GO:0018164"}


id: GO:0072096
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that reduces the frequency, rate or extent of branch elongation involved in ureteric bud branching, the growth of a branch of the ureteric bud along its axis.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of developmental growth","termid":"GO:0048640"},{"relation_name":"is_a","term_name":"regulation of branch elongation involved in ureteric bud branching","termid":"GO:0072095"},{"relation_name":"negatively_regulates","term_name":"branch elongation involved in ureteric bud branching","termid":"GO:0060681"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of branch elongation involved in ureteric bud branching","termid":"GO:0072096"}


id: MONDO:0006074
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A carcinoma composed of malignant glandular cells and malignant squamous cells.","definition_xrefs":["NCIT:C3727"],"direct_ancestors":[{"relation_name":"is_a","term_name":"squamous cell carcinoma","termid":"MONDO:0005096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"adenosquamous carcinoma","secondary_identifiers":["EFO:1000073","SCTID:403902008","DOID:4830","ICDO:8560/3","MEDGEN:104901","icd11.foundation:1793155313","MESH:D018196","UMLS:C0206623"],"synonyms":[{"name":"adenosquamous carcinoma","type":"exact"},{"name":"adenosquamous carcinoma (morphologic abnormality)","type":"exact"},{"name":"adenosquamous cell carcinoma","type":"exact"},{"name":"carcinoma, adenosquamous, malignant","type":"exact"},{"name":"mixed adenocarcinoma and epidermoid carcinoma","type":"exact"},{"name":"mixed adenocarcinoma and epidermoid cell carcinoma","type":"exact"},{"name":"mixed adenocarcinoma and squamous carcinoma","type":"exact"},{"name":"mixed adenocarcinoma and squamous cell carcinoma","type":"exact"}],"termid":"MONDO:0006074","xrefs":{"Monarch":{"xref_id":"0006074"}}}


id: GO:0048507
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the meristem over time, from its formation to the mature structure.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tissue development","termid":"GO:0009888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"meristem development","termid":"GO:0048507"}


id: PATO:0002367
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"Male quality of being incapable to reproduce because of functional loss of the testicles from surgical removal or chemical means.","definition_xrefs":["PATOC:MF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"male","termid":"PATO:0000384"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"castrated male","termid":"PATO:0002367"}


id: GO:0102723
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: UDP-alpha-D-glucose + curcumin = curcumin monoglucoside + UDP + H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete UDP-glucose:curcumin glucosyltransferase activity (obsolete GO:0102723)","termid":"GO:0102723"}


id: GO:0003304
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The morphogenetic process in which the myocardium bends along a linear axis and contributes to the process of heart jogging.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"morphogenesis of an epithelial fold","termid":"GO:0060571"},{"relation_name":"part_of","term_name":"heart jogging","termid":"GO:0003146"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"myocardial epithelial involution involved in heart jogging","termid":"GO:0003304"}


id: GO:0033627
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via an integrin, a heterodimeric adhesion receptor formed by the non-covalent association of particular alpha and beta subunits.","definition_xrefs":["PMID:14754902","GOC:add","PMID:12213832"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell adhesion","termid":"GO:0007155"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"cell adhesion mediated by integrin","synonyms":[{"name":"cell adhesion mediated by integrin complex","type":"exact"}],"termid":"GO:0033627"}


id: PBO:0090065
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial RNA polymerase specificity factor, predicted rRNA methyltransferase Mtf1","termid":"PBO:0090065"}


id: _global:located_in
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"a relation between two independent continuants, the target and the location, in which the target is entirely within the location","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"located_in","secondary_identifiers":["RO:0001025"],"termid":"_global:located_in"}


id: FYPO:0006478
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which cohesin dsDNA (leading strand) loading is decreased during the mitotic cell cycle. Cohesin dsDNA (leading strand) loading is the topological linking of a cohesin ring complex to double-stranded DNA, i.e. the leading strand, in chromatin.","definition_xrefs":["GO:0062021","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased mitotic cohesin loading","termid":"FYPO:0005555"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000641","FYPO:0005447","FYPO:0001985","FYPO:0000138","FYPO:0000631"],"is_obsolete":false,"name":"decreased mitotic cohesin dsDNA (leading strand) loading","synonyms":[{"name":"decreased cohesin dsDNA (leading strand) loading during mitotic cell cycle","type":"exact"},{"name":"decreased cohesin dsDNA (leading strand) loading during vegetative growth","type":"exact"},{"name":"decreased mitotic cohesin association with dsDNA (leading strand) chromatin","type":"exact"},{"name":"decreased mitotic cohesin localization to dsDNA (leading strand) chromatin","type":"exact"},{"name":"reduced mitotic cohesin dsDNA (leading strand) loading","type":"exact"}],"termid":"FYPO:0006478"}


id: PBO:0045058
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"discs large MAGUK scaffold protein 1","termid":"PBO:0045058"}


id: PATO:0000438
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A variability quality inhering in a bearer by virtue of the bearer's lacking or not exhibiting variation.","definition_xrefs":["Dictionary:http://dictionary.reference.com/"],"direct_ancestors":[{"relation_name":"is_a","term_name":"variability","termid":"PATO:0001303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"invariant","synonyms":[{"name":"constant","type":"related"},{"name":"uniform","type":"exact"}],"termid":"PATO:0000438"}


id: GO:0102704
data:
  {"annotated_genes":["SJAG_03056"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[60909],"is_not":false,"summary":null,"term":"GO:0102704"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: GDP-alpha-D-mannose(2-) + a (mannosyl)2-(N-acetylglucosaminyl)2-diphosphodolichol = H+ + GDP(3-) + a (mannosyl)3-(N-acetylglucosaminyl)2-diphosphodolichol.","definition_xrefs":["GOC:pz","EC:2.4.1.257"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycolipid 1,6-alpha-mannosyltransferase activity","termid":"GO:0033164"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03056":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016740","GO:0016757"],"is_obsolete":false,"name":"GDP-Man:Man2GlcNAc2-PP-dolichol alpha-1,6-mannosyltransferase activity","references_by_uniquename":{"GO_REF:0000003":null},"secondary_identifiers":["RHEA:29519","MetaCyc:RXN-5463"],"termid":"GO:0102704","terms_by_termid":{"GO:0102704":null}}


id: GO:0035110
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which the anatomical structures of a leg are generated and organized. A leg is a limb on which an animal walks and stands.","definition_xrefs":["ISBN:0198612001","GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete leg morphogenesis (obsolete GO:0035110)","synonyms":[{"name":"leg morphogenesis","type":"exact"}],"termid":"GO:0035110"}


id: PBO:0033819
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing factor Srp2","termid":"PBO:0033819"}


id: PBO:0116593
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GSE1 antisense RNA 1","termid":"PBO:0116593"}


id: MONDO:0009550
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Familial primary hypomagnesemia with hypercalciuria and nephrocalcinosis without severe ocular involvement (FHHN) is a form of familial primary hypomagnesemia (FPH), characterized by recurrent urinary tract infections, nephrolithiasis, bilateral nephrocalcinosis, renal magnesium (Mg) wasting, hypercalciuria and kidney failure.","definition_xrefs":["Orphanet:31043"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephrocalcinosis","termid":"MONDO:0001567"},{"relation_name":"is_a","term_name":"renal tubular transport disease","termid":"MONDO:0006510"},{"relation_name":"is_a","term_name":"familial primary hypomagnesemia with hypercalciuria and nephrocalcinosis","termid":"MONDO:0017624"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240","MONDO:0005066"],"is_obsolete":false,"name":"renal hypomagnesemia 3","secondary_identifiers":["GARD:2906","DOID:0060880","SCTID:725033008","UMLS:C0268448","MESH:C537153","MEDGEN:120640","OMIM:248250"],"synonyms":[{"name":"CLDN16 familial primary hypomagnesemia","type":"exact"},{"name":"CLDN16 primary hypomagnesemia","type":"exact"},{"name":"FHHNC without severe ocular involvement","type":"exact"},{"name":"HOMG3","type":"exact"},{"name":"familial primary hypomagnesemia caused by mutation in CLDN16","type":"exact"},{"name":"familial primary hypomagnesemia with hypercalciuria and nephrocalcinosis without severe ocular involvement","type":"exact"},{"name":"hypercalciuria, childhood, self-limiting","type":"related"},{"name":"hypomagnesemia 3, renal","type":"related"},{"name":"hypomagnesemia, familial, with hypercalciuria and nephrocalcinosis","type":"related"},{"name":"hypomagnesemia, familial, with hypercalciuria and nephrocalcinosis hypercalciuria, childhood, self-limiting, included","type":"related"},{"name":"hypomagnesemia, isolated renal","type":"related"},{"name":"hypomagnesemia, primary, due to defect in renal tubular Transport Of magnesium","type":"related"},{"name":"hypomagnesemia, primary, due to defect in renal tubular Transport of magnesium","type":"related"},{"name":"isolated renal hypomagnesemia","type":"exact"},{"name":"magnesium, defect in renal tubular transport of","type":"related"},{"name":"primary hypomagnesemia caused by mutation in CLDN16","type":"exact"},{"name":"primary hypomagnesemia due to defect in renal tubular transport of magnesium","type":"exact"},{"name":"renal hypomagnesemia type 3","type":"exact"}],"termid":"MONDO:0009550","xrefs":{"Monarch":{"xref_id":"0009550"}}}


id: PBO:0005239
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone-like transcription factor family (CBF/NF-Y)","termid":"PBO:0005239"}


id: PBO:0067224
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 293, pseudogene","termid":"PBO:0067224"}


id: MONDO:0012332
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete short stature-delayed bone age due to thyroid hormone metabolism deficiency (obsolete MONDO:0012332)","termid":"MONDO:0012332","xrefs":{"Monarch":{"xref_id":"0012332"}}}


id: PBO:0074208
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 41 member 1","termid":"PBO:0074208"}


id: PBO:0073338
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serpin family A member 15, pseudogene","termid":"PBO:0073338"}


id: PBO:0040111
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ASAP1 intronic transcript 2","termid":"PBO:0040111"}


id: MOD:00219
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-arginine residue to L-citrulline.","definition_xrefs":["DeltaMass:0","RESID:AA0214","Unimod:7#R","OMSSA:33","PubMed:2466844"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-arginine residue","termid":"MOD:00902"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-citrulline","synonyms":[{"name":"(S)-2-amino-5-(carbamoylamino)pentanoic acid","type":"exact"},{"name":"2-amino-5-(aminocarbonyl)aminopentanoic acid","type":"exact"},{"name":"Cit","type":"exact"},{"name":"Citrulline","type":"exact"},{"name":"Deamidated","type":"related"},{"name":"Deamidation","type":"related"},{"name":"L-citrulline","type":"exact"},{"name":"MOD_RES Citrulline","type":"exact"},{"name":"N5-(aminocarbonyl)ornithine","type":"exact"},{"name":"N5-carbamoylornithine","type":"exact"},{"name":"N5-carbamylornithine","type":"exact"},{"name":"alpha-amino-delta-ureidovaleric acid","type":"exact"},{"name":"citrullinationr","type":"exact"},{"name":"delta-ureidonorvaline","type":"exact"}],"termid":"MOD:00219"}


id: PBO:0086050
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function reputedly involved in spore wall assembly","termid":"PBO:0086050"}


id: RO:0002469
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","direct_ancestors":[{"relation_name":"is_a","term_name":"trophically_interacts_with","termid":"RO:0002438"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"provides_nutrients_for","termid":"RO:0002469"}


id: MONDO:0035370
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any inflammatory bowel disease in which the cause of the disease is a mutation in the ALPI gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene","PMID:29567797"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inflammatory bowel disease","termid":"MONDO:0005265"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0004335"],"is_obsolete":false,"name":"ALPI-related inflammatory bowel disease","secondary_identifiers":["MEDGEN:1842198","Orphanet:597887","GARD:22400","UMLS:C5681586"],"termid":"MONDO:0035370","xrefs":{"Monarch":{"xref_id":"0035370"}}}


id: PBO:0003159
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.5.4.6","termid":"PBO:0003159"}


id: MOD:01629
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that forms cyclo[(prolylserin)-O-yl] cysteinate by the natural process of cross-linking an L-cysteine residue an L-proline residue, and an L-serine residue, or by effectively modifying a cysteine residue.","definition_xrefs":["PubMed:7961166","RESID:AA0489"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified residue that can arise from different natural residues","termid":"MOD:00859"},{"relation_name":"is_a","term_name":"crosslinked L-cysteine residue","termid":"MOD:02044"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"cyclo[(prolylserin)-O-yl] cysteinate","synonyms":[{"name":"(3,6-dioxopyrrolo[4,5-a]piperazin-2-yl)methyl cysteinate","type":"exact"},{"name":"MOD_RES Cyclo[(prolylserin)-O-yl] cysteinate","type":"exact"},{"name":"[(3S,8aS)-1,4-dioxooctahydropyrrolo[1,2-a]pyrazin-3-yl]methyl (2R)-2-amino-3-sulfanylpropanoate","type":"exact"},{"name":"cyclo[(prolylserin)-O-yl] cysteinate","type":"exact"}],"termid":"MOD:01629"}


id: PR:Q9P7K6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC21C3.19 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P7K6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SDO1-like protein C21C3.19 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC21C3.19","synonyms":[{"name":"Spom972h-SPBC21C3.19","type":"exact"}],"termid":"PR:Q9P7K6"}


id: PBO:0085831
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery","termid":"PBO:0085831"}


id: GO:0044318
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: L-aspartate + fumarate = alpha-iminosuccinate + succinate.","definition_xrefs":["PMID:20149100"],"gene_count":0,"genotype_count":0,"name":"obsolete L-aspartate:fumarate oxidoreductase activity (obsolete GO:0044318)","termid":"GO:0044318"}


id: PBO:0034653
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_maintenance_of_protein_localization_in_vacuole,_with_protein_secreted","termid":"PBO:0034653"}


id: MONDO:0015521
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"leukoencephalopathy with vanishing white matter","termid":"MONDO:0800448"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"juvenile or adult CACH syndrome","secondary_identifiers":["GARD:16980","icd11.foundation:1400114953","MEDGEN:1826173","UMLS:C5680649","Orphanet:157719"],"termid":"MONDO:0015521","xrefs":{"Monarch":{"xref_id":"0015521"}}}


id: PBO:0063143
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostate and testis expressed 3","termid":"PBO:0063143"}


id: GO:0008021
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A secretory organelle, typically 50 nm in diameter, of presynaptic nerve terminals; accumulates in high concentrations of neurotransmitters and secretes these into the synaptic cleft by fusion with the 'active zone' of the presynaptic plasma membrane.","definition_xrefs":["PMID:10099709","PMID:12563290"],"direct_ancestors":[{"relation_name":"is_a","term_name":"exocytic vesicle","termid":"GO:0070382"},{"relation_name":"part_of","term_name":"presynapse","termid":"GO:0098793"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0031410","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"synaptic vesicle","secondary_identifiers":["NIF_Subcellular:sao1071221672","Wikipedia:Synaptic_vesicle"],"synonyms":[{"name":"docked vesicle","type":"narrow"}],"termid":"GO:0008021"}


id: MONDO:0005940
data:
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id: MONDO:1012176
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id: PR:000049981
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id: MONDO:0016856
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id: MONDO:0000178
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id: PBO:0056639
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id: GO:0051252
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id: PBO:0064665
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id: MONDO:0010103
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id: PBO:0111068
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id: PBO:0043999
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id: MONDO:0013056
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id: PBO:0087150
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id: PBO:0078313
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id: GO:0006275
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id: PBO:0038299
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id: GO:0098853
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id: MONDO:0003338
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id: PATO:0000534
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id: PBO:0070934
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id: PBO:0080845
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id: PBO:0090892
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id: FYPO:0000803
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id: PBO:0061610
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id: RO:0003003
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id: PBO:0004454
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id: PBO:0017444
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id: PBO:0079695
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id: GO:0044431
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id: GO:0015504
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id: PBO:0080554
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id: GO:1905925
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id: SO:1001283
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id: GO:0070691
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id: PBO:0047679
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id: GO:0102277
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id: GO:0035351
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id: GO:0052612
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id: SO:0001048
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id: MONDO:0016736
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id: GO:1904162
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id: FYPO:0000618
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id: MONDO:0016567
data:
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id: PBO:0070533
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id: GO:0106259
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id: FYPO:0000059
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