# terms

id: GO:0072676
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The movement of a lymphocyte within or between different tissues and organs of the body.","definition_xrefs":["GOC:mah","CL:0000542","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mononuclear cell migration","termid":"GO:0071674"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lymphocyte migration","termid":"GO:0072676"}


id: GO:0097419
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Cellular inclusion composed of numerous tau fibrils arranged in a disorderly array. Tau protein is a major component, though Pick bodies also contain ubiquitin, alpha-synuclein, and apolipoprotein E.","definition_xrefs":["NIF_Subcellular:nlx_subcell_20090102"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inclusion body","termid":"GO:0016234"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"Pick body","termid":"GO:0097419"}


id: PBO:0117100
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCAT1 antisense RNA 1","termid":"PBO:0117100"}


id: MONDO:0008927
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare genetic eye disease characterized by optic disk anomalies (bilateral colobomatous optic disks, retinal vessels arising from the peripheral optic disk) and macular atrophy. Peripapillary chorioretinal atrophy and chorioretinal and iris coloboma have also been described. Patients present with horizontal nystagmus and poor visual acuity.","definition_xrefs":["Orphanet:435930"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"disorder of visual system","termid":"MONDO:0024458"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"colobomatous optic disc-macular atrophy-chorioretinopathy syndrome","secondary_identifiers":["UMLS:C4225424","GARD:17719","MEDGEN:894574","MESH:C565876","OMIM:212550","DOID:0080635"],"synonyms":[{"name":"ODRMD","type":"related"},{"name":"optic DISC anomalies with retinal and/or macular dystrophy","type":"related"}],"termid":"MONDO:0008927","xrefs":{"Monarch":{"xref_id":"0008927"}}}


id: FYPO:0001497
data:
  {"alleles_by_uniquename":{"SJAG_04332:allele-1":{"allele_type":"amino_acid_mutation","description":"I30T,T572P","gene_uniquename":"SJAG_04332","name":"cdc25-D9","uniquename":"SJAG_04332:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[119773],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007701"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a vegetative cell is inviable and elongated, and progression through the mitotic cell cycle is arrested in interphase. The cell contains one nucleus and no septum.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"cell cycle arrest in mitotic interphase","termid":"FYPO:0000837"},{"relation_name":"is_a","term_name":"cell cycle arrest in mitotic interphase","termid":"FYPO:0000837"},{"relation_name":"is_a","term_name":"inviable elongated vegetative cell","termid":"FYPO:0001490"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04332":null},"genotype_count":1,"genotypes_by_uniquename":{"cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cdc25-D9(I30T,T572P aa)","display_uniquename":"cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04332:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000631","FYPO:0000005","FYPO:0000002","FYPO:0001985","FYPO:0000004"],"is_obsolete":false,"name":"inviable elongated cell with mitotic cell cycle arrest in interphase","references_by_uniquename":{"PMID:25866389":null},"single_locus_annotated_genes":["SJAG_04332"],"single_locus_genotype_uniquenames":["cdc25-D9-I30T,T572P-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"elongated inviable cell with mitotic cell cycle arrest in interphase during vegetative growth","type":"exact"},{"name":"elongated inviable vegetative cell with mitotic cell cycle arrest in interphase","type":"exact"},{"name":"inviable elongated mononucleate aseptate vegetative cell with cell cycle arrest in mitotic interphase","type":"exact"},{"name":"inviable elongated vegetative cell with cell cycle arrest in interphase during mitotic cell cycle","type":"exact"},{"name":"inviable elongated vegetative cell with mitotic cell cycle arrest in interphase","type":"exact"},{"name":"inviable elongated vegetative cell with mitotic interphase arrest","type":"exact"},{"name":"lethal; elongated vegetative cell with mitotic cell cycle arrest in interphase","type":"exact"},{"name":"mitotic cell cycle arrest in interphase with elongated inviable cell","type":"exact"},{"name":"mitotic interphase arrested elongated inviable vegetative cell","type":"exact"}],"termid":"FYPO:0001497","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000137":null,"FYPO:0007701":null,"FYPO_EXT:0000001":null}}


id: SO:0000103
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The end of the clone insert.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"junction","termid":"SO:0000699"},{"relation_name":"part_of","term_name":"clone_insert","termid":"SO:0000753"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"clone_insert_end","synonyms":[{"name":"clone insert end","type":"exact"}],"termid":"SO:0000103"}


id: PBO:0026842
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination,_multiple_cell_divisions,_swollen,_elongated_pear-shaped_cell","termid":"PBO:0026842"}


id: PBO:0113085
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytoplasmic aspartyl aminopeptidase with possible vacuole function; targeted to vacuole via Vps10p-dependent endosomal vacuolar protein sorting pathway and via CVT pathway; cleaves unblocked N-terminal acidic amino acids from peptide substrates; forms 12-subunit homo-oligomer; M18 metalloprotease family","termid":"PBO:0113085"}


id: PBO:0058607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6739","termid":"PBO:0058607"}


id: GO:0035564
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the size of a kidney.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of anatomical structure size","termid":"GO:0090066"},{"relation_name":"part_of","term_name":"kidney morphogenesis","termid":"GO:0060993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of kidney size","termid":"GO:0035564"}


id: PBO:0030969
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_H3-K9_dimethylation","termid":"PBO:0030969"}


id: MONDO:0025699
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Coffin-Siris syndrome","termid":"MONDO:0015452"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Coffin-Siris syndrome 12","secondary_identifiers":["GARD:16443","UMLS:C5444111","DOID:0112370","MEDGEN:1782096","OMIM:619325"],"synonyms":[{"name":"CSS12","type":"exact"}],"termid":"MONDO:0025699","xrefs":{"Monarch":{"xref_id":"0025699"}}}


id: PBO:0044921
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DiGeorge syndrome critical region gene 6 like","termid":"PBO:0044921"}


id: MONDO:0013050
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"hereditary lethal multiple congenital anomalies/dysmorphic syndrome","termid":"MONDO:0043009"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lethal polymalformative syndrome, Boissel type","secondary_identifiers":["Orphanet:210144","MESH:C567856","OMIM:612938","UMLS:C2752001","GARD:17110","MEDGEN:414158"],"synonyms":[{"name":"GDFD","type":"related"},{"name":"growth retardation, developmental delay, and facial dysmorphism","type":"related"},{"name":"growth retardation, developmental delay, facial dysmorphism","type":"exact"}],"termid":"MONDO:0013050","xrefs":{"Monarch":{"xref_id":"0013050"}}}


id: MONDO:0004840
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"cystic kidney disease","termid":"MONDO:0002473"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"non-congenital cyst of kidney","secondary_identifiers":["DOID:9621","UMLS:C0268799","MEDGEN:541491","ICD9:593.2","SCTID:105999006"],"termid":"MONDO:0004840","xrefs":{"Monarch":{"xref_id":"0004840"}}}


id: GO:1900744
data:
  {"annotated_genes":["SJAG_03903","SJAG_03828","SJAG_00318","SJAG_03893","SJAG_02945","SJAG_02013","SJAG_00027","SJAG_03185","SJAG_01587","SJAG_06621","SJAG_06592","SJAG_06622","SJAG_02000","SJAG_01199","SJAG_05000","SJAG_02183","SJAG_02135","SJAG_04825"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96293,91986,99763,117408,95361,118648],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903753"},{"annotations":[109268,109264,95582,112151,109263,109265,112812,117700,109267,118614,109266,109269],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1900745"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of p38MAPK cascade.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of MAPK cascade","termid":"GO:0043408"},{"relation_name":"regulates","term_name":"p38MAPK cascade","termid":"GO:0038066"}],"gene_count":18,"genes_by_uniquename":{"SJAG_00027":null,"SJAG_00318":null,"SJAG_01199":null,"SJAG_01587":null,"SJAG_02000":null,"SJAG_02013":null,"SJAG_02135":null,"SJAG_02183":null,"SJAG_02945":null,"SJAG_03185":null,"SJAG_03828":null,"SJAG_03893":null,"SJAG_03903":null,"SJAG_04825":null,"SJAG_05000":null,"SJAG_06592":null,"SJAG_06621":null,"SJAG_06622":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of p38MAPK cascade","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of osmosensory signaling MAPK cascade","type":"narrow"},{"name":"regulation of p38 MAPK cascade","type":"exact"},{"name":"regulation of p38 cascade","type":"exact"}],"termid":"GO:1900744","terms_by_termid":{"GO:1900745":null,"GO:1903753":null}}


id: GO:0000226
data:
  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biogenesis","type":"related"}],"termid":"GO:0000226","terms_by_termid":{"GO:0000022":null,"GO:0000073":null,"GO:0000132":null,"GO:0000212":null,"GO:0000226":null,"GO:0001578":null,"GO:0007019":null,"GO:0007020":null,"GO:0007052":null,"GO:0030951":null,"GO:0030953":null,"GO:0030954":null,"GO:0031023":null,"GO:0031024":null,"GO:0031025":null,"GO:0031110":null,"GO:0031117":null,"GO:0031122":null,"GO:0031322":null,"GO:0032118":null,"GO:0043622":null,"GO:0046785":null,"GO:0051013":null,"GO:0051225":null,"GO:0051228":null,"GO:0051232":null,"GO:0051256":null,"GO:0051300":null,"GO:0051415":null,"GO:0051417":null,"GO:0060172":null,"GO:0060236":null,"GO:0061804":null,"GO:0061805":null,"GO:0070462":null,"GO:0070507":null,"GO:0090306":null,"GO:0090307":null,"GO:0110161":null,"GO:0110162":null,"GO:0140456":null,"GO:0140641":null,"GO:0140642":null,"GO:1901673":null,"GO:1902441":null,"GO:1903087":null,"GO:1905047":null,"GO:1990395":null,"GO:1990734":null,"GO:1990810":null}}


id: PR:O94600
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A TELO2-interacting protein 1 homolog that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO04677"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TEL2-interacting protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC622.13c","secondary_identifiers":["UniProtKB:O94600"],"synonyms":[{"name":"Spom972h-TTI1","type":"exact"}],"termid":"PR:O94600"}


id: GO:0022815
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the transfer of a large uncharged polar molecule from one side of a membrane to the other.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729"],"gene_count":0,"genotype_count":0,"name":"obsolete large uncharged polar molecule transmembrane transporter activity (obsolete GO:0022815)","synonyms":[{"name":"large uncharged polar molecule transmembrane transporter activity","type":"exact"}],"termid":"GO:0022815"}


id: MONDO:1010062
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital adrenal hyperplasia due to 11-beta hydroxylase deficiency that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital adrenal hyperplasia, non-human animal","termid":"MONDO:1010050"},{"relation_name":"is_a","term_name":"reproductive system disorder, non-human animal","termid":"MONDO:1011354"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital adrenal hyperplasia due to 11-beta hydroxylase deficiency, non-human animal","secondary_identifiers":["OMIA:001661"],"termid":"MONDO:1010062","xrefs":{"Monarch":{"xref_id":"1010062"}}}


id: PBO:0031285
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-regulation_phenotype","termid":"PBO:0031285"}


id: GO:0071729
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the beak are generated and organized. The avian beak is an external anatomical structure, in the head region, that is adapted for feeding self and young, catching prey, probing, etc. It encompasses, but is not restricted to, the maxilla, mandible, maxillary rhamphotheca, mandibular rhamphotheca, nostril, nasal fossa, nasal bones, egg tooth and rictus.","definition_xrefs":["GOC:lp","ISBN:0702008729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"},{"relation_name":"part_of","term_name":"beak development","termid":"GO:0071728"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"beak morphogenesis","termid":"GO:0071729"}


id: PBO:0087487
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of COMPASS (Set1C); a complex which methylates histone H3 on lysine 4 and is required in telomeric transcriptional silencing; promotes meiotic DSB formation by interacting with H3K4me3 and Rec107p, a protein required for Spo11p-catalyzed DSB formation located on chromosome axes; interacts with Orc2p; PHD finger domain protein similar to human CGBP, an unmethylated CpG binding protein; relocalizes to cytosol in response to hypoxia","termid":"PBO:0087487"}


id: MONDO:0009499
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A lysosomal disorder that affects the white matter of the central and peripheral nervous systems. It includes infantile, late-infantile/juvenile and adult forms.","definition_xrefs":["Orphanet:487"],"direct_ancestors":[{"relation_name":"is_a","term_name":"eye degenerative disorder","termid":"MONDO:0004884"},{"relation_name":"is_a","term_name":"leukodystrophy","termid":"MONDO:0019046"},{"relation_name":"is_a","term_name":"sphingolipidosis","termid":"MONDO:0019255"},{"relation_name":"is_a","term_name":"hereditary peripheral neuropathy","termid":"MONDO:0020127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002561"},{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0002561","MONDO:0002525","MONDO:0005559","MONDO:0005328","MONDO:0005066","MONDO:0005244"],"is_obsolete":false,"name":"Krabbe disease","secondary_identifiers":["NORD:1368","GARD:6844","MedDRA:10023492","SCTID:192782005","NANDO:1200074","ICD10CM:E75.23","NCIT:C61254","MESH:D007965","DOID:10587","OMIM:245200","SCTID:189979005","MEDGEN:44131","NANDO:2200564","UMLS:C0023521","icd11.foundation:796317173"],"synonyms":[{"name":"GALC deficiency","type":"exact"},{"name":"GALC enzyme deficiency","type":"exact"},{"name":"GLD","type":"related"},{"name":"Krabbe disease","type":"exact"},{"name":"Krabbe leukodystrophy","type":"related"},{"name":"Krabbe's disease","type":"exact"},{"name":"Krabbe's leukodystrophy","type":"exact"},{"name":"Leukodystrophy, Krabbe's","type":"exact"},{"name":"beta galactocerebrosidase deficiency","type":"exact"},{"name":"diffuse globoid body sclerosis","type":"exact"},{"name":"galactocerebrosidase deficiency","type":"exact"},{"name":"galactosylceramidase deficiency","type":"exact"},{"name":"galactosylceramide Beta-galactosidase deficiency","type":"related"},{"name":"galactosylceramide lipidosis","type":"exact"},{"name":"globoid cell leukodystrophy","type":"exact"},{"name":"globoid cell leukoencephalopathy","type":"exact"},{"name":"later onset Krabbe disease","type":"narrow"},{"name":"later-onset Krabbe disease","type":"narrow"}],"termid":"MONDO:0009499","xrefs":{"Monarch":{"xref_id":"0009499"}}}


id: PBO:0076133
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUB1 pseudogene 4","termid":"PBO:0076133"}


id: PBO:0031664
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_modification_during_vegetative_growth","termid":"PBO:0031664"}


id: PBO:0046054
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 3 subunit F pseudogene 2","termid":"PBO:0046054"}


id: PBO:0002100
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6.2.1.-","termid":"PBO:0002100"}


id: PBO:0013774
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mst2 histone acetytransferase acytyltransferase complex, predicted phosphoric monoester hydrolase Ptf1","termid":"PBO:0013774"}


id: FYPO:0000806
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which Golgi organization is abnormal. Golgi organization results in the assembly, arrangement of constituent parts, or disassembly of the Golgi apparatus.","definition_xrefs":["PomBase:mah","GO:0007030"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal endomembrane system organization","termid":"FYPO:0000804"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abnormal Golgi organization","synonyms":[{"name":"abnormal Golgi organisation","type":"exact"},{"name":"abnormal Golgi organization during mitotic cell cycle","type":"related"},{"name":"abnormal Golgi organization during vegetative growth","type":"exact"}],"termid":"FYPO:0000806"}


id: MONDO:0850105
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autoimmune disease","termid":"MONDO:0007179"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"non-specific autoimmune brainstem encephalitis with characteristic antibodies","secondary_identifiers":["MEDGEN:1842903","UMLS:C5680405","Orphanet:624199","GARD:22500"],"termid":"MONDO:0850105","xrefs":{"Monarch":{"xref_id":"0850105"}}}


id: PBO:0053828
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1093","termid":"PBO:0053828"}


id: PBO:0061324
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear pore complex interacting protein family member B2","termid":"PBO:0061324"}


id: MONDO:0004013
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A morphologic variant of embryonal rhabdomyosarcoma arising from the vagina. It is characterized by the formation of a cambium layer in the affected tissue and polypoid nodules with an abundant myxoid stroma. It occurs in female adults.","definition_xrefs":["NCIT:C40267"],"direct_ancestors":[{"relation_name":"is_a","term_name":"botryoid-type embryonal rhabdomyosarcoma of the vagina","termid":"MONDO:0003994"},{"relation_name":"is_a","term_name":"adult botryoid rhabdomyosarcoma","termid":"MONDO:0004012"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"adult vagina botryoid embryonal rhabdomyosarcoma","secondary_identifiers":["UMLS:C1515893","MEDGEN:272994","DOID:6848"],"synonyms":[{"name":"adult botryoid-type embryonal rhabdomyosarcoma of the vagina","type":"exact"},{"name":"adult sarcoma Botryoides of the vagina","type":"exact"},{"name":"adult vagina botryoid rhabdomyosarcoma","type":"related"},{"name":"botryoid-type embryonal rhabdomyosarcoma of the vagina of adults","type":"exact"}],"termid":"MONDO:0004013","xrefs":{"Monarch":{"xref_id":"0004013"}}}


id: GO:0018608
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 1-indanone + NADPH + 1/2 O2 = NADP+ + 3-hydroxy-1-indanone.","definition_xrefs":["UM-BBD_reactionID:r0416"],"gene_count":0,"genotype_count":0,"name":"obsolete 1-indanone dioxygenase activity (obsolete GO:0018608)","termid":"GO:0018608"}


id: PATO:0002306
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A triangular quality inhering in a bearer by virtue of the bearer's having all sides of the same length.","definition_xrefs":["PATOC:JB"],"direct_ancestors":[{"relation_name":"is_a","term_name":"triangular","termid":"PATO:0001875"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"equilateral triangular","termid":"PATO:0002306"}


id: PBO:0045381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DPP3 pseudogene 2","termid":"PBO:0045381"}


id: GO:0052801
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving bicyclic nitroimidazoles, imidazole derivatives with two rings and a nitro group attached to one ring.","definition_xrefs":["PMID:16387854","PMID:19039139"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nitroimidazole metabolic process","termid":"GO:0052802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"bicyclic nitroimidazole metabolic process","synonyms":[{"name":"bicyclic nitroimidazole metabolism","type":"exact"}],"termid":"GO:0052801"}


id: GO:0006584
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving any of a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine.","definition_xrefs":["GOC:jl","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biogenic amine metabolic process","termid":"GO:0006576"},{"relation_name":"is_a","term_name":"catechol-containing compound metabolic process","termid":"GO:0009712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"catecholamine metabolic process","synonyms":[{"name":"catecholamine metabolism","type":"exact"}],"termid":"GO:0006584"}


id: MONDO:0019086
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Esophageal carcinoma (EC) is a tumor arising in the epithelial cells lining the esophagus and can be divided into two subtypes: esophageal squamous cell carcinoma (ESCC) and esophageal adenocarcinoma (EAC).","definition_xrefs":["Orphanet:70482"],"direct_ancestors":[{"relation_name":"is_a","term_name":"digestive system carcinoma","termid":"MONDO:0006181"},{"relation_name":"is_a","term_name":"esophageal cancer","termid":"MONDO:0007576"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992"],"is_obsolete":false,"name":"carcinoma of esophagus","secondary_identifiers":["MEDGEN:56256","GARD:6383","DOID:1107","UMLS:C0152018","EFO:0002916","MedDRA:10030155","NCIT:C3513","SCTID:372138000"],"synonyms":[{"name":"Esophageal cancer","type":"exact"},{"name":"cancer of esophagus","type":"narrow"},{"name":"cancer of oesophagus","type":"narrow"},{"name":"cancer of the esophagus","type":"narrow"},{"name":"cancer of the oesophagus","type":"narrow"},{"name":"carcinoma of esophagus","type":"exact"},{"name":"carcinoma of the esophagus","type":"exact"},{"name":"carcinoma of the oesophagus","type":"exact"},{"name":"esophageal cancer","type":"narrow"},{"name":"esophageal cancer, NOS","type":"narrow"},{"name":"esophageal carcinoma","type":"exact"},{"name":"esophagus carcinoma","type":"exact"},{"name":"oesophagus carcinoma","type":"exact"}],"termid":"MONDO:0019086","xrefs":{"Monarch":{"xref_id":"0019086"}}}


id: PBO:0040930
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCL2 interacting protein 3 pseudogene 1","termid":"PBO:0040930"}


id: PBO:0047390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box protein 30","termid":"PBO:0047390"}


id: PBO:0003880
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U2 snRNP-associated protein SF3B14 ortholog (predicted)","termid":"PBO:0003880"}


id: PBO:0110376
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IL9R pseudogene 2","termid":"PBO:0110376"}


id: GO:0032351
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving any hormone.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of metabolic process","termid":"GO:0009892"},{"relation_name":"is_a","term_name":"regulation of hormone metabolic process","termid":"GO:0032350"},{"relation_name":"negatively_regulates","term_name":"hormone metabolic process","termid":"GO:0042445"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of hormone metabolic process","synonyms":[{"name":"down regulation of hormone metabolic process","type":"exact"},{"name":"down-regulation of hormone metabolic process","type":"exact"},{"name":"downregulation of hormone metabolic process","type":"exact"},{"name":"inhibition of hormone metabolic process","type":"narrow"},{"name":"negative regulation of hormone metabolism","type":"exact"}],"termid":"GO:0032351"}


id: GO:1903338
data:
  {"annotated_genes":["SJAG_01787","SJAG_00610","SJAG_03655","SJAG_04668","SJAG_04771","SJAG_04659","SJAG_00661","SJAG_02684","SJAG_04666","SJAG_02278","SJAG_04522","SJAG_00163","SJAG_02258","SJAG_01255","SJAG_04551","SJAG_01181","SJAG_03705","SJAG_04462","SJAG_00424","SJAG_03704"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[74528,107933,108771,110432],"is_not":false,"summary":null,"term":"GO:1903338"},{"annotations":[102466,111311],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903340"},{"annotations":[92744,87833],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140748"},{"annotations":[91094,103165,106244,118237,92728,118367,105670],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090334"},{"annotations":[89761,103167,95266,92750],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070610"},{"annotations":[100505,102469,93037],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032995"},{"annotations":[71898,111312,87908],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0060237"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cell wall organization or biogenesis.","definition_xrefs":["GOC:vw","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular process","termid":"GO:0050794"},{"relation_name":"regulates","term_name":"cell wall organization or biogenesis","termid":"GO:0071554"}],"gene_count":20,"genes_by_uniquename":{"SJAG_00163":null,"SJAG_00424":null,"SJAG_00610":null,"SJAG_00661":null,"SJAG_01181":null,"SJAG_01255":null,"SJAG_01787":null,"SJAG_02258":null,"SJAG_02278":null,"SJAG_02684":null,"SJAG_03655":null,"SJAG_03704":null,"SJAG_03705":null,"SJAG_04462":null,"SJAG_04522":null,"SJAG_04551":null,"SJAG_04659":null,"SJAG_04666":null,"SJAG_04668":null,"SJAG_04771":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0071554","GO:0008150"],"is_obsolete":false,"name":"regulation of cell wall organization or biogenesis","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"regulation of cell wall organisation or biogenesis","type":"exact"},{"name":"regulation of cell wall organization or biogenesis at cellular level","type":"exact"},{"name":"regulation of cellular cell wall organisation or biogenesis","type":"exact"},{"name":"regulation of cellular cell wall organization or biogenesis","type":"exact"}],"termid":"GO:1903338","terms_by_termid":{"GO:0032995":null,"GO:0060237":null,"GO:0070610":null,"GO:0090334":null,"GO:0140748":null,"GO:1903338":null,"GO:1903340":null}}


id: PBO:0069821
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1107, pseudogene","termid":"PBO:0069821"}


id: PBO:0029032
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H3-K9_acetylation_at_telomere","termid":"PBO:0029032"}


id: GO:0031223
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The behavior of an organism in response to a sound.","definition_xrefs":["GOC:pr","GOC:rc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mechanosensory behavior","termid":"GO:0007638"},{"relation_name":"part_of","term_name":"response to auditory stimulus","termid":"GO:0010996"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"auditory behavior","synonyms":[{"name":"auditory behaviour","type":"exact"},{"name":"behavioral response to sound","type":"exact"},{"name":"behavioural response to sound","type":"exact"}],"termid":"GO:0031223"}


id: MONDO:0018347
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete severe intellectual disability-progressive postnatal microcephaly- midline stereotypic hand movements syndrome (obsolete MONDO:0018347)","termid":"MONDO:0018347","xrefs":{"Monarch":{"xref_id":"0018347"}}}


id: FYPO:0001239
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing tert-butyl hydroperoxide (t-BOOH, TBHP).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0002057"}],"interesting_parent_ids":["FYPO:0002060","FYPO:0000003","FYPO:0002058","FYPO:0000139","FYPO:0000257","FYPO:0002057"],"is_obsolete":false,"name":"normal growth on tert-butyl hydroperoxide","synonyms":[{"name":"normal cell population growth in presence of tert-butyl hydroperoxide","type":"exact"},{"name":"normal cell population growth on 2-methyl-prop-2-yl-hydroperoxide","type":"exact"},{"name":"normal cell population growth on tert-butyl hydroperoxide","type":"exact"},{"name":"normal cellular response to tert-butyl hydroperoxide","type":"related"},{"name":"normal growth on TBHP","type":"exact"},{"name":"normal growth on t-BOOH","type":"exact"},{"name":"normal vegetative cell population growth on tert-butyl hydroperoxide","type":"exact"}],"termid":"FYPO:0001239"}


id: MONDO:0006908
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare, potentially life-threatening disorder caused by acute ischemic infarction or hemorrhage in the pituitary gland. It is most often associated with the presence of a pituitary gland adenoma. Signs and symptoms include headache, vomiting, visual disturbances, and endocrine dysfunction.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pituitary gland infarction","termid":"MONDO:0001259"},{"relation_name":"is_a","term_name":"acquired pituitary hormone deficiency","termid":"MONDO:0019832"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pituitary apoplexy","secondary_identifiers":["GARD:19287","MEDGEN:18489","DOID:1129","EFO:1001108","icd11.foundation:1938573221","Orphanet:95613","ICD9:253.8","MedDRA:10056447","MESH:D010899","SCTID:237701005","UMLS:C0032001","NCIT:C26853"],"synonyms":[{"name":"pituitary gland apoplexy","type":"exact"}],"termid":"MONDO:0006908","xrefs":{"Monarch":{"xref_id":"0006908"}}}


id: PBO:0081490
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 385B","termid":"PBO:0081490"}


id: PBO:0082036
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1-phosphatidylinositol-3-phosphate 5-kinase; vacuolar membrane kinase that generates phosphatidylinositol (3,5)P2, which is involved in vacuolar sorting and homeostasis","termid":"PBO:0082036"}


id: PBO:0076301
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synaptic Ras GTPase activating protein 1","termid":"PBO:0076301"}


id: PBO:0085321
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phosphatidylinositol 4,5-bisphosphate 5-phosphatase; synaptojanin-like protein with an N-terminal Sac1 domain, plays a role in phosphatidylinositol 4,5-bisphosphate homeostasis and in endocytosis; null mutation confers cold-tolerant growth","termid":"PBO:0085321"}


id: SO:0000004
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A coding exon that is not the most 3-prime or the most 5-prime in a given transcript.","direct_ancestors":[{"relation_name":"is_a","term_name":"coding_exon","termid":"SO:0000195"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interior_coding_exon","synonyms":[{"name":"interior coding exon","type":"exact"}],"termid":"SO:0000004"}


id: GO:0042399
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving ectoine (1,4,5,6-tetrahydro-2-methyl-4-pyrimidinecarboxylic acid), a tetrahydropyrimidine commonly synthesized by halophilic bacteria.","definition_xrefs":["PMID:11823218","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid metabolic process","termid":"GO:0032787"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"ectoine metabolic process","synonyms":[{"name":"ectoine metabolism","type":"exact"}],"termid":"GO:0042399"}


id: MONDO:0003619
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Acute or chronic inflammation of the fallopian tube. It is most often caused by Neisseria gonorrhoeae and Chlamydia trachomatis infections. The infections usually originate in the vagina and ascend to the fallopian tube. Symptoms include abdominal, pelvic, and lower back pain, pain during ovulation and sexual intercourse, fever, nausea, and vomiting. Complications include infertility and ectopic pregnancy.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pelvic inflammatory disease","termid":"MONDO:0000922"},{"relation_name":"is_a","term_name":"fallopian tube disorder","termid":"MONDO:0002156"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"salpingitis","secondary_identifiers":["NCIT:C26880","SCTID:88157006","UMLS:C0036130","DOID:5733","MEDGEN:20646","MESH:D012488"],"synonyms":[{"name":"fallopian tube inflammation","type":"exact"},{"name":"inflammation of fallopian tube","type":"exact"}],"termid":"MONDO:0003619","xrefs":{"Monarch":{"xref_id":"0003619"}}}


id: MONDO:0035781
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete non-syndromic anorectal malformation with rectourethral fistula (obsolete MONDO:0035781)","secondary_identifiers":["Orphanet:600961"],"termid":"MONDO:0035781","xrefs":{"Monarch":{"xref_id":"0035781"}}}


id: GO:0070670
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-4 stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to cytokine","termid":"GO:0034097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to interleukin-4","synonyms":[{"name":"response to IL-4","type":"exact"}],"termid":"GO:0070670"}


id: PBO:0071345
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L29 pseudogene 3","termid":"PBO:0071345"}


id: GO:0062234
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of platelet activating factor, 2-O-acetyl-1-O-octadecyl-sn-glycero-3-phosphocholine.","definition_xrefs":["PMID:16371369"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycerol ether catabolic process","termid":"GO:0044269"},{"relation_name":"is_a","term_name":"platelet activating factor metabolic process","termid":"GO:0046469"},{"relation_name":"is_a","term_name":"glycerophospholipid catabolic process","termid":"GO:0046475"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006629"],"is_obsolete":false,"name":"platelet activating factor catabolic process","synonyms":[{"name":"2-O-acetyl-1-O-octadecyl-sn-glycero-3-phosphocholine catabolic process","type":"exact"},{"name":"PAF catabolic process","type":"related"}],"termid":"GO:0062234"}


id: PBO:0043473
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCR4-NOT transcription complex subunit 10","termid":"PBO:0043473"}


id: MONDO:0009683
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autosomal recessive limb-girdle muscular dystrophy type 2H (LGMD2H) is a mild subtype of autosomal recessive limb girdle muscular dystrophy characterized by slowly progressive proximal muscle weakness and wasting of the pelvic and shoulder girdles with onset that usually occurs during the second or third decade of life. Clinical presentation is variable and can include calf psuedohypertrophy, joint contractures, scapular winging, muscle cramping and/or facial and respiratory muscle involvement.","definition_xrefs":["Orphanet:1878"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive limb-girdle muscular dystrophy","termid":"MONDO:0015152"},{"relation_name":"is_a","term_name":"qualitative or quantitative defects of TRIM32","termid":"MONDO:0016153"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0005336","MONDO:0006025"],"is_obsolete":false,"name":"autosomal recessive limb-girdle muscular dystrophy type 2H","secondary_identifiers":["UMLS:C0270968","DOID:0110282","MESH:C535897","MEDGEN:78750","SCTID:43226001","OMIM:254110","ICD9:359.89","GARD:3844"],"synonyms":[{"name":"LGMD2H","type":"exact"},{"name":"Sarcotubular myopathy","type":"exact"},{"name":"TRIM32 autosomal recessive limb-girdle muscular dystrophy","type":"exact"},{"name":"autosomal recessive limb-girdle muscular dystrophy caused by mutation in TRIM32","type":"exact"},{"name":"autosomal recessive limb-girdle muscular dystrophy type 2H","type":"exact"},{"name":"limb-girdle muscular dystrophy due to TRIM32 deficiency","type":"exact"},{"name":"limb-girdle muscular dystrophy type 2H","type":"related"},{"name":"muscular dystrophy Hutterite type","type":"exact"},{"name":"muscular dystrophy limb-girdle type 2H","type":"related"},{"name":"muscular dystrophy, Hutterite type","type":"related"},{"name":"muscular dystrophy, limb-girdle, autosomal recessive 8","type":"exact"},{"name":"muscular dystrophy, limb-girdle, type 2H","type":"related"},{"name":"sarcotubular myopathy","type":"exact"}],"termid":"MONDO:0009683","xrefs":{"Monarch":{"xref_id":"0009683"}}}


id: FYPO:0004806
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the cell wall is broken down to a lesser extent than in wild type at the site of cell-cell fusion during mating.","definition_xrefs":["PomBase:mah","PMID:25825517"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell wall disassembly at cell fusion site","termid":"FYPO:0006499"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0004805"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000301"}],"interesting_parent_ids":["FYPO:0000301","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0004805"],"is_obsolete":false,"name":"incomplete cell wall disassembly at cell fusion site","synonyms":[{"name":"incomplete cell wall disassembly at cell fusion site during conjugation with cellular fusion","type":"exact"},{"name":"incomplete cell wall disassembly at cell fusion site during mating","type":"exact"},{"name":"incomplete cell wall disassembly at cell-cell fusion focus","type":"exact"},{"name":"incomplete cell wall disassembly at cell-cell fusion site","type":"exact"},{"name":"incomplete fungal-type cell wall disassembly at cell fusion site","type":"exact"},{"name":"incomplete fungal-type cell wall disassembly involved in conjugation with cellular fusion","type":"exact"}],"termid":"FYPO:0004806"}


id: PBO:0062803
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oxysterol binding protein like 2","termid":"PBO:0062803"}


id: MONDO:0009895
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Postaxial polydactyly-dental and vertebral anomalies syndrome is a rare, genetic, developmental defect during embryogenesis syndrome characterized by postaxial polydactyly and other abnormalities of the hands and feet (e.g. brachydactyly, broad toes), hypoplasia and fusion of the vertebral bodies, as well as dental abnormalities (fused teeth, macrodontia, hypodontia, short roots). There have been no further descriptions in the literature since 1977.","definition_xrefs":["Orphanet:2916"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"postaxial polydactyly-dental and vertebral anomalies syndrome","secondary_identifiers":["OMIM:263540","UMLS:C1849732","GARD:16614","MEDGEN:342342","MESH:C564880"],"synonyms":[{"name":"polydactyly, postaxial, with dental and vertebral anomalies","type":"related"}],"termid":"MONDO:0009895","xrefs":{"Monarch":{"xref_id":"0009895"}}}


id: PR:O59814
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC794.04c gene.","definition_xrefs":["UniProtKB:O59814","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized transporter C794.04c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC794.04c","synonyms":[{"name":"Spom972h-SPCC794.04c","type":"exact"}],"termid":"PR:O59814"}


id: PBO:0044614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DDB1 and CUL4 associated factor 16","termid":"PBO:0044614"}


id: PR:Q9UTR5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rgf2 gene.","definition_xrefs":["UniProtKB:Q9UTR5","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rho1 guanine nucleotide exchange factor 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1006.06","synonyms":[{"name":"Spom972h-rgf2","type":"exact"}],"termid":"PR:Q9UTR5"}


id: MONDO:0018518
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete adenocarcinoma of the anal canal (obsolete MONDO:0018518)","termid":"MONDO:0018518","xrefs":{"Monarch":{"xref_id":"0018518"}}}


id: GO:0106137
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a IkappaB kinase complex.","definition_xrefs":["PMID:12492477","GOC:pga"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex binding","termid":"GO:0044877"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"IkappaB kinase complex binding","termid":"GO:0106137"}


id: RO:0003308
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A relationship between an entity and a condition (phenotype or disease) with which it exhibits a statistical dependence relationship.","direct_ancestors":[{"relation_name":"is_a","term_name":"correlated_with","termid":"RO:0002610"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"correlated_with_condition","termid":"RO:0003308"}


id: PBO:0072701
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RUVBL1 antisense RNA 1","termid":"PBO:0072701"}


id: GO:0009815
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1-aminocyclopropane-1-carboxylate + L-ascorbate + O2 = CO2 + dehydroascorbate + ethylene + 2 H2O + hydrogen cyanide. Ethene is also known as ethylene.","definition_xrefs":["RHEA:23640"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen","termid":"GO:0016715"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"1-aminocyclopropane-1-carboxylate oxidase activity","secondary_identifiers":["EC:1.14.17.4","MetaCyc:ETHYL-RXN","KEGG_REACTION:R07214"],"synonyms":[{"name":"1-aminocyclopropane-1-carboxylate oxygenase (ethylene-forming)","type":"related"},{"name":"ACC oxidase activity","type":"exact"},{"name":"aminocyclopropanecarboxylate oxidase activity","type":"related"},{"name":"ethene-forming enzyme","type":"broad"},{"name":"ethylene-forming enzyme","type":"broad"}],"termid":"GO:0009815"}


id: MOD:01318
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative -","definition_xrefs":["PubMed:12216740","PubMed:11510821","PubMed:12422359","Unimod:178#S"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphorylation to amine thiol","termid":"MOD:00535"},{"relation_name":"is_a","term_name":"modified L-serine residue","termid":"MOD:00916"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphorylation to amine thiol - site S","synonyms":[{"name":"DAET","type":"related"},{"name":"phosphorylation to amine thiol","type":"related"}],"termid":"MOD:01318"}


id: PBO:0047072
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 133 member A","termid":"PBO:0047072"}


id: GO:0106341
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1,2,3-tri-(9Z,12Z)-octadecadienoylglycerol + N-(30-hydroxytriacontanoyl)-sphing-4-enine = di-(9Z,12Z)-octadecadienoylglycerol + N-[30-(9Z,12Z-octadecadienoyloxy)-triacontanoyl]-sphing-4-enine.","definition_xrefs":["PMID:28248318","RHEA:55264"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016746","GO:0003674","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"omega-hydroxyceramide transacylase activity","termid":"GO:0106341"}


id: PBO:0043393
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carboxymethylenebutenolidase homolog","termid":"PBO:0043393"}


id: GO:0005958
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A large protein complex which is involved in the repair of DNA double-strand breaks and, in mammals, V(D)J recombination events. It consists of the DNA-dependent protein kinase catalytic subunit (DNA-PKcs), the DNA end-binding heterodimer Ku, the nuclear phosphoprotein XRCC4 or a homolog thereof, and DNA ligase IV.","definition_xrefs":["PMID:12235392","GOC:mah","PMID:17072889","GOC:jl","PMID:10854421"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nonhomologous end joining complex","termid":"GO:0070419"},{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005634","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"DNA-dependent protein kinase-DNA ligase 4 complex","secondary_identifiers":["GO:0005959"],"termid":"GO:0005958"}


id: GO:1904627
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a phorbol 13-acetate 12-myristate stimulus.","definition_xrefs":["PMID:2200903","GOC:TermGenie","GO_REF:0000071"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to lipid","termid":"GO:0033993"},{"relation_name":"is_a","term_name":"response to alcohol","termid":"GO:0097305"},{"relation_name":"is_a","term_name":"response to ketone","termid":"GO:1901654"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to phorbol 13-acetate 12-myristate","synonyms":[{"name":"response to PMA","type":"exact"},{"name":"response to TPA","type":"exact"},{"name":"response to phorbol 12-tetradecanoate 13-acetate","type":"exact"},{"name":"response to tetradecanoylphorbol acetate","type":"exact"}],"termid":"GO:1904627"}


id: PBO:0004043
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L35a (predicted)","termid":"PBO:0004043"}


id: GO:0002224
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by a ligand binding to a toll-like receptor of a target cell. Toll-like receptors directly bind pattern motifs from a variety of microbial sources to initiate an innate immune response.","definition_xrefs":["GO_REF:0000022","GOC:add","PMID:15585605","PMID:15728447","PMID:12524386","PMID:12855817","ISBN:0781735149","PMID:12467241"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pattern recognition receptor signaling pathway","termid":"GO:0002221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"toll-like receptor signaling pathway","secondary_identifiers":["Reactome:R-HSA-168898"],"synonyms":[{"name":"TLR signaling pathway","type":"exact"},{"name":"toll-like receptor signalling pathway","type":"exact"}],"termid":"GO:0002224"}


id: PBO:0002903
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RFC related checkpoint protein Rad17","termid":"PBO:0002903"}


id: SOFP:evidenceGB
data:
  {"annotation_feature_type":"gene","cv_name":"feature_property","direct_ancestors":[{"relation_name":"is_a","term_name":"feature_property","termid":"SOFP:feature_property"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"evidenceGB","termid":"SOFP:evidenceGB"}


id: PBO:0050870
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IDH1 antisense RNA 1","termid":"PBO:0050870"}


id: PBO:0035920
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_transport_during_vegetative_growth","termid":"PBO:0035920"}


id: GO:0009547
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A ribosome contained within a plastid.","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organellar ribosome","termid":"GO:0000313"},{"relation_name":"part_of","term_name":"plastid stroma","termid":"GO:0009532"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"plastid ribosome","termid":"GO:0009547"}


id: GO:0007594
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The adhesion of the puparia of Diptera to their substrate; normally effected by a 'glue' secreted by the larval salivary gland and expectorated at the time of pupariation.","definition_xrefs":["GOC:ma"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organism adhesion to substrate","termid":"GO:0022609"},{"relation_name":"part_of","term_name":"molting cycle, chitin-based cuticle","termid":"GO:0007591"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"puparial adhesion","synonyms":[{"name":"puparial glue","type":"related"}],"termid":"GO:0007594"}


id: PBO:0064831
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 1 regulatory subunit 9B","termid":"PBO:0064831"}


id: PBO:0042988
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CHEK2 pseudogene 1","termid":"PBO:0042988"}


id: GO:0051476
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A phosphoenolpyruvate-dependent sugar phosphotransferase transport specific for mammosylglycerate.","definition_xrefs":["PMID:368051"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphoenolpyruvate-dependent sugar phosphotransferase system","termid":"GO:0009401"},{"relation_name":"is_a","term_name":"glycoside transport","termid":"GO:1901656"},{"relation_name":"is_a","term_name":"carboxylic acid transmembrane transport","termid":"GO:1905039"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"phosphoenolpyruvate-dependent mannosylglycerate phosphotransferase system","synonyms":[{"name":"mannosylglycerate transport","type":"broad"}],"termid":"GO:0051476"}


id: PBO:0047002
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 90 member A5, pseudogene","termid":"PBO:0047002"}


id: GO:0042899
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which arabinan is transported across a lipid bilayer, from one side of a membrane to the other.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide transport","termid":"GO:0015774"},{"relation_name":"is_a","term_name":"carbohydrate transmembrane transport","termid":"GO:0034219"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"arabinan transmembrane transport","synonyms":[{"name":"arabinan transport","type":"related"}],"termid":"GO:0042899"}


id: PBO:0050590
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock factor binding protein 1 pseudogene 1","termid":"PBO:0050590"}


id: PATO:0001653
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An alignment quality inhering in a bearer by virtue of the bearer's being in a proper spatial positioning with respect to an additional entity.","definition_xrefs":["PATO:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alignment","termid":"PATO:0001652"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aligned with","synonyms":[{"name":"aligned ","type":"exact"},{"name":"aligned to","type":"related"}],"termid":"PATO:0001653"}


id: PBO:0045520
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dystrobrevin alpha","termid":"PBO:0045520"}


id: PBO:0070794
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L12 pseudogene 24","termid":"PBO:0070794"}


id: PBO:0061102
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NLGN4Y antisense RNA 1","termid":"PBO:0061102"}


id: GO:0048052
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which relatively unspecialized cells acquire the specialized features of R1 and R6 photoreceptors. An example of this process is found in Drosophila melanogaster.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"compound eye photoreceptor cell differentiation","termid":"GO:0001751"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"R1/R6 cell differentiation","termid":"GO:0048052"}


id: MONDO:0013726
data:
  {"annotated_genes":["SJAG_02384","SJAG_02848"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85854,85855],"is_not":false,"summary":null,"term":"MONDO:0013726"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"encephalopathy due to mitochondrial and peroxisomal fission defect","termid":"MONDO:0054865"},{"relation_name":"is_a","term_name":"Mendelian encephalopathy","termid":"MONDO:0100198"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02384":null,"SJAG_02848":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0019053"}],"interesting_parent_ids":["MONDO:0004069","MONDO:0005066","MONDO:0019053"],"is_obsolete":false,"name":"encephalopathy, lethal, due to defective mitochondrial peroxisomal fission 1","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0070347","GARD:17509","MEDGEN:482290","OMIM:614388","UMLS:C3280660","Orphanet:330050"],"synonyms":[{"name":"DNM1L-associated encephalopathy due to peroxisomal and mitochondrial fission defect","type":"exact"},{"name":"EMPF","type":"related"},{"name":"EMPF1","type":"related"},{"name":"encephalopathy due to defective mitochondrial and peroxisomal fission 1","type":"related"},{"name":"encephalopathy, lethal, due to defective mitochondrial and peroxisomal fission","type":"related"},{"name":"encephalopathy, lethal, due to defective mitochondrial peroxisomal fission 1","type":"exact"},{"name":"lethal encephalopathy due to mitochondrial and peroxisomal fission defect","type":"exact"}],"termid":"MONDO:0013726","terms_by_termid":{"MONDO:0013726":null},"xrefs":{"Monarch":{"xref_id":"0013726"}}}


id: PBO:0016558
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hikeshi protein, Opi10","termid":"PBO:0016558"}


id: PBO:0079990
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"USP9Y pseudogene 28","termid":"PBO:0079990"}


id: GO:0048907
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the anterior lateral line ganglion over time, from its formation to the mature structure. The anterior lateral line ganglion develops from cranial ectodermal placodes situated between the eye and ear.","definition_xrefs":["ISBN:0125296509"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lateral line ganglion development","termid":"GO:0048890"},{"relation_name":"part_of","term_name":"anterior lateral line system development","termid":"GO:0048898"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anterior lateral line ganglion development","synonyms":[{"name":"gALL development","type":"exact"}],"termid":"GO:0048907"}


id: PBO:0086676
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; identified by fungal homology comparisons and RT-PCR; this ORF partially overlaps RDN5-4; YLR157C-C has a paralog, YLR154C-H, that arose from a segmental duplication","termid":"PBO:0086676"}


id: GO:0043160
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The volume enclosed within the acrosome membrane.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secretory granule lumen","termid":"GO:0034774"},{"relation_name":"is_a","term_name":"lysosomal lumen","termid":"GO:0043202"},{"relation_name":"part_of","term_name":"acrosomal vesicle","termid":"GO:0001669"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005773"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005773","GO:0031410","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"acrosomal lumen","termid":"GO:0043160"}


id: PBO:0089725
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c1 Cyt1","termid":"PBO:0089725"}


id: PATO:0002396
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A positional quality inhering in a bearer by virtue of the bearer's being positioned towards the axis of an organism.","definition_xrefs":["PATOC:EH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mislocalised","termid":"PATO:0000628"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mislocalized adaxially","termid":"PATO:0002396"}


id: PR:Q9UTF8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ugo1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UTF8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial fusion and transport protein ugo1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1B2.02c","synonyms":[{"name":"Spom972h-ugo1","type":"exact"}],"termid":"PR:Q9UTF8"}


id: PBO:0052531
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kallikrein related peptidase 4","termid":"PBO:0052531"}


id: MONDO:0002377
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A morphologic variant of breast fibroadenoma without clinical significance. It is characterized by distortion and compression of the ducts by proliferating stromal cells.","definition_xrefs":["NCIT:C4271"],"direct_ancestors":[{"relation_name":"is_a","term_name":"breast fibroadenoma","termid":"MONDO:0002056"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"breast intracanalicular fibroadenoma","secondary_identifiers":["MEDGEN:137772","ICDO:9011/0","DOID:2656","UMLS:C0334496"],"synonyms":[{"name":"breast intracanalicular fibroadenoma","type":"exact"},{"name":"intracanalicular breast fibroadenoma","type":"exact"},{"name":"intracanalicular fibroadenoma","type":"exact"},{"name":"intracanalicular fibroadenoma of breast","type":"exact"},{"name":"intracanalicular fibroadenoma of the breast","type":"exact"}],"termid":"MONDO:0002377","xrefs":{"Monarch":{"xref_id":"0002377"}}}


id: SO:3000000
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene component region which acts as a recombinational unit of a gene whose functional form is generated through somatic recombination.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gene_component_region","termid":"SO:0000842"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gene_segment","synonyms":[{"name":"gene segment","type":"exact"}],"termid":"SO:3000000"}


id: PBO:0046044
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 3 subunit C","termid":"PBO:0046044"}


id: PBO:0083056
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Diaminohydroxyphoshoribosylaminopyrimidine deaminase; catalyzes the second step of the riboflavin biosynthesis pathway","termid":"PBO:0083056"}


id: GO:0018892
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving cyclohexylsulfamate, also known as cyclamic acid. Sodium cyclohexylsulfamate (CHS-Na) was a widely used sweetening agent but was banned because of the suspicion of carcinogenicity and metabolic conversion to cyclohexylamine (CHA), a toxic substance. It is now used as a fungicide.","definition_xrefs":["UM-BBD_pathwayID:chs"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur compound metabolic process","termid":"GO:0006790"},{"relation_name":"is_a","term_name":"xenobiotic metabolic process","termid":"GO:0006805"},{"relation_name":"is_a","term_name":"oxoacid metabolic process","termid":"GO:0043436"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006790","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"cyclohexylsulfamate metabolic process","synonyms":[{"name":"cyclohexylsulfamate metabolism","type":"exact"},{"name":"cyclohexylsulphamate metabolic process","type":"exact"},{"name":"cyclohexylsulphamate metabolism","type":"exact"}],"termid":"GO:0018892"}


id: PBO:0055362
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2791","termid":"PBO:0055362"}


id: PBO:0048200
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gamma-aminobutyric acid type A receptor subunit alpha4","termid":"PBO:0048200"}


id: GO:0002032
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process that inhibits the signaling function of a G protein-coupled receptor by uncoupling the receptor from its downstream G proteins.","definition_xrefs":["GOC:dph","GOC:tb","PMID:8396717"],"gene_count":0,"genotype_count":0,"name":"obsolete desensitization of G protein-coupled receptor signaling pathway by arrestin (obsolete GO:0002032)","synonyms":[{"name":"arrestin mediated desensitisation of G-protein coupled receptor protein signalling pathway","type":"exact"},{"name":"arrestin mediated desensitization of G-protein coupled receptor protein signaling pathway","type":"exact"},{"name":"arrestin-mediated desensitization of G-protein coupled receptor protein signaling pathway","type":"exact"},{"name":"desensitization of G-protein coupled receptor protein signaling pathway by arrestin","type":"exact"}],"termid":"GO:0002032"}


id: PBO:0045666
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DYNAP pseudogene 1","termid":"PBO:0045666"}


id: GO:0051934
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The uptake of catecholamine neurotransmitters by neurons or glial cells. This process leads to inactivation and recycling of neurotransmitters.","definition_xrefs":["ISBN:0123668387"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catecholamine uptake","termid":"GO:0090493"},{"relation_name":"is_a","term_name":"neurotransmitter reuptake","termid":"GO:0098810"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"catecholamine uptake involved in synaptic transmission","synonyms":[{"name":"catecholamine neurotransmitter import into glial cell","type":"narrow"},{"name":"catecholamine neurotransmitter import into neuron","type":"narrow"},{"name":"catecholamine neurotransmitter recycling","type":"broad"},{"name":"catecholamine neurotransmitter reuptake","type":"exact"},{"name":"catecholamine reuptake during transmission of nerve impulse","type":"related"},{"name":"catecholamine uptake during transmission of nerve impulse","type":"related"}],"termid":"GO:0051934"}


id: FYPO:0006246
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the nucleus is increased during a cellular response to osmotic stress.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein localization to nucleus during vegetative growth","termid":"FYPO:0001130"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0000138"],"is_obsolete":false,"name":"increased protein localization to nucleus during cellular response to osmotic stress","synonyms":[{"name":"increased protein localisation to nucleus during cellular response to osmotic stress during vegetative growth","type":"exact"},{"name":"increased protein localization to nucleus during cellular response to osmotic stress during mitotic cell cycle","type":"related"},{"name":"increased protein localization to nucleus during osmotic stress","type":"exact"}],"termid":"FYPO:0006246"}


id: GO:0061514
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by interleukin-34 binding to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:dph","PMID:18467591"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine-mediated signaling pathway","termid":"GO:0019221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"interleukin-34-mediated signaling pathway","termid":"GO:0061514"}


id: GO:0044825
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the covalent insertion of processed 3'-viral DNA ends into host chromosomal DNA by a trans-esterification reaction.","definition_xrefs":["PMID:22580823"],"gene_count":0,"genotype_count":0,"name":"obsolete retroviral strand transfer activity (obsolete GO:0044825)","synonyms":[{"name":"strand transfer reaction","type":"exact"}],"termid":"GO:0044825"}


id: GO:0002710
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of T cell mediated immunity.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of lymphocyte mediated immunity","termid":"GO:0002707"},{"relation_name":"is_a","term_name":"regulation of T cell mediated immunity","termid":"GO:0002709"},{"relation_name":"is_a","term_name":"negative regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains","termid":"GO:0002823"},{"relation_name":"negatively_regulates","term_name":"T cell mediated immunity","termid":"GO:0002456"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of T cell mediated immunity","synonyms":[{"name":"down regulation of T cell mediated immunity","type":"exact"},{"name":"down-regulation of T cell mediated immunity","type":"exact"},{"name":"downregulation of T cell mediated immunity","type":"exact"},{"name":"inhibition of T cell mediated immunity","type":"narrow"},{"name":"negative regulation of T lymphocyte mediated immunity","type":"exact"},{"name":"negative regulation of T-cell mediated immunity","type":"exact"},{"name":"negative regulation of T-lymphocyte mediated immunity","type":"exact"}],"termid":"GO:0002710"}


id: SO:0001033
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"DNA belonging to the genome of a chloroplast, a photosynthetic plastid.","direct_ancestors":[{"relation_name":"has_quality","term_name":"DNA","termid":"SO:0000352"},{"relation_name":"is_a","term_name":"chloroplast_sequence","termid":"SO:0000745"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chloroplast_DNA","synonyms":[{"name":"chloroplast DNA","type":"exact"}],"termid":"SO:0001033"}


id: PBO:0055284
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2711","termid":"PBO:0055284"}


id: GO:0001305
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process that results in changes in chromatin structure contributing to chronological cell aging, occurring in non-dividing cells.","definition_xrefs":["GOC:dph","GOC:tb","GOC:jh"],"gene_count":0,"genotype_count":0,"name":"obsolete progressive alteration of chromatin involved in chronological cell aging (obsolete GO:0001305)","synonyms":[{"name":"progressive alteration of chromatin during chronological cell ageing","type":"related"},{"name":"progressive alteration of chromatin during chronological cell aging","type":"related"}],"termid":"GO:0001305"}


id: GO:2000148
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of planar cell polarity pathway involved in ventricular septum morphogenesis.","definition_xrefs":["GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of planar cell polarity pathway involved in ventricular septum morphogenesis (obsolete GO:2000148)","termid":"GO:2000148"}


id: PBO:0055505
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2939","termid":"PBO:0055505"}


id: GO:0043658
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A double-enveloped cell compartment, composed of the endosymbiont with its plasmalemma (as inner envelope) and an outer envelope (the perisymbiontic membrane) derived from the host cell.","definition_xrefs":["GOC:cc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host intracellular membrane-bounded organelle","termid":"GO:0033648"},{"relation_name":"is_a","term_name":"host cell cytoplasm part","termid":"GO:0033655"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host symbiosome","termid":"GO:0043658"}


id: GO:0051766
data:
  {"annotated_genes":["SJAG_02321","SJAG_03409"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71576,75916],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008440"},{"annotations":[99124],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000823"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: inositol trisphosphate + ATP = inositol tetrakisphosphate + ADP + H+.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"},{"relation_name":"is_a","term_name":"inositol phosphate kinase activity","termid":"GO:0180030"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02321":null,"SJAG_03409":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016301","GO:0016740","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"inositol trisphosphate kinase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"IP3K","type":"broad"}],"termid":"GO:0051766","terms_by_termid":{"GO:0000823":null,"GO:0008440":null}}


id: MOD:00549
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Isotopic label","definition_xrefs":["PubMed:15283597","Unimod:196"],"direct_ancestors":[{"relation_name":"is_a","term_name":"(2)H deuterium tagged reagent","termid":"MOD:01431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"APTA d3","synonyms":[{"name":"(3-acrylamidopropyl)trimethylammonium","type":"related"},{"name":"APTA d3","type":"related"},{"name":"QAT:2H(3)","type":"related"}],"termid":"MOD:00549"}


id: PBO:0028190
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-viable_branched,_elongated,_multiseptate_vegetative_cell","termid":"PBO:0028190"}


id: GO:0002558
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An inflammatory response driven by antigen recognition by antibodies bound to Fc receptors on mast cells, occurring within minutes after exposure of a sensitized individual to the antigen, and leading to the release of a variety of inflammatory mediators such as histamines.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mast cell mediated immunity","termid":"GO:0002448"},{"relation_name":"is_a","term_name":"type I hypersensitivity","termid":"GO:0016068"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"type I hypersensitivity mediated by mast cells","termid":"GO:0002558"}


id: GO:1901271
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of lipooligosaccharide.","definition_xrefs":["GOC:yaf","UniPathway:UPA00501","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate derivative biosynthetic process","termid":"GO:1901137"},{"relation_name":"is_a","term_name":"lipooligosaccharide metabolic process","termid":"GO:1901269"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lipooligosaccharide biosynthetic process","synonyms":[{"name":"lipooligosaccharide anabolism","type":"exact"},{"name":"lipooligosaccharide biosynthesis","type":"exact"},{"name":"lipooligosaccharide formation","type":"exact"},{"name":"lipooligosaccharide synthesis","type":"exact"}],"termid":"GO:1901271"}


id: PBO:0088792
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA replication termination factor Rtf2","termid":"PBO:0088792"}


id: GO:2000280
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of root development.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of developmental process","termid":"GO:0050793"},{"relation_name":"regulates","term_name":"root development","termid":"GO:0048364"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of root development","termid":"GO:2000280"}


id: PBO:0002316
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase Ppk18 (predicted)","termid":"PBO:0002316"}


id: PBO:0040551
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4","termid":"PBO:0040551"}


id: PBO:0001522
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA cleavage and polyadenylation specificity factor complex subunit (predicted)","termid":"PBO:0001522"}


id: GO:0004982
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with an N-formyl peptide to initiate a change in cell activity.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled peptide receptor activity","termid":"GO:0008528"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"N-formyl peptide receptor activity","synonyms":[{"name":"Fmet-leu-phe receptor","type":"exact"}],"termid":"GO:0004982"}


id: PBO:0045291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynamin 1 pseudogene 43","termid":"PBO:0045291"}


id: MONDO:0015748
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"White sponge nevus (WSN) is a rare and autosomal dominant genetic disease in which the oral mucosa is white or grayish, thickened, folded, and spongy. The onset is early in life, and both sexes are affected equally. Other common sites include the tongue, floor of the mouth, and alveolar mucosa.","definition_xrefs":["Orphanet:171723"],"direct_ancestors":[{"relation_name":"is_a","term_name":"melanocytic nevus","termid":"MONDO:0005073"},{"relation_name":"is_a","term_name":"hereditary skin disorder","termid":"MONDO:0100118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"hereditary mucosal leukokeratosis","secondary_identifiers":["ICD9:528.6","MESH:D053529","NCIT:C84760","GARD:8501","SCTID:389203001","DOID:0050448","UMLS:C1721005","OMIMPS:193900","MEDGEN:328433"],"synonyms":[{"name":"White sponge nevus of Cannon","type":"exact"},{"name":"hereditary mucosal leukokeratosis","type":"exact"},{"name":"white sponge nevus","type":"exact"},{"name":"white sponge nevus of Cannon","type":"exact"}],"termid":"MONDO:0015748","xrefs":{"Monarch":{"xref_id":"0015748"}}}


id: GO:0038068
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the concomitant phosphorylation of threonine (T) and tyrosine (Y) residues in a Thr-Glu-Tyr (TEY) thiolester sequence in a MAP kinase (MAPK) substrate, as part of a MAPK signaling cascade that contributes to cell wall organization or biogenesis.","definition_xrefs":["GOC:signaling"],"gene_count":0,"genotype_count":0,"name":"obsolete MAP kinase kinase activity involved in cell wall organization or biogenesis (obsolete GO:0038068)","synonyms":[{"name":"MAP kinase kinase activity involved in cell wall biogenesis","type":"narrow"},{"name":"MAP2K activity involved in cell wall integrity","type":"exact"},{"name":"MAPKK activity involved in cell wall integrity","type":"exact"}],"termid":"GO:0038068"}


id: SO:0001585
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant whereby at least one base of a codon is changed resulting in a codon that encodes for a different but similar amino acid. These variants may or may not be deleterious.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"missense_variant","termid":"SO:0001583"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conservative_missense_variant","synonyms":[{"name":"conservative missense codon","type":"exact"},{"name":"conservative missense variant","type":"exact"},{"name":"neutral missense codon","type":"related"},{"name":"quiet missense codon","type":"related"}],"termid":"SO:0001585"}


id: PBO:0074189
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 38 member 10","termid":"PBO:0074189"}


id: PBO:0074216
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 44 member 2","termid":"PBO:0074216"}


id: PBO:0113335
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; may have been brought into S. cerevisiae genome via horizontal transfer mediated by Ty1 retrotransposition","termid":"PBO:0113335"}


id: GO:0071164
data:
  {"annotated_genes":["SJAG_03901"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[75311],"is_not":false,"summary":null,"term":"GO:0071164"}]},"cv_name":"molecular_function","definition":"Catalysis of two successive methyl transfer reactions from AdoMet to the N-2 atom of guanosine, thereby converting 7-methylguanosine in an RNA cap to 2,2,7 trimethylguanosine.","definition_xrefs":["PMID:11983179","PMID:18775984"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA methyltransferase activity","termid":"GO:0008173"},{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03901":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0016741","GO:0003824","GO:0140098"],"is_obsolete":false,"name":"RNA cap trimethylguanosine synthase activity","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"RNA trimethylguanosine synthase activity","type":"exact"},{"name":"cap hypermethylase activity","type":"exact"},{"name":"small nuclear RNA methyltransferase activity","type":"related"},{"name":"snRNA methyltransferase activity","type":"related"}],"termid":"GO:0071164","terms_by_termid":{"GO:0071164":null}}


id: PBO:0069536
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 806, pseudogene","termid":"PBO:0069536"}


id: PBO:0059400
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein S31 pseudogene 2","termid":"PBO:0059400"}


id: GO:0090728
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases brood size. Brood size is the number of progeny that survive embryogenesis and are cared for at one time.","definition_xrefs":["GOC:rz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biological regulation","termid":"GO:0065007"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of brood size","termid":"GO:0090728"}


id: MONDO:0000586
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A hypersensitivity reaction type II disease that involves the exocrine system.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autoimmune disease","termid":"MONDO:0007179"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"autoimmune disorder of exocrine system","secondary_identifiers":["DOID:0060029"],"synonyms":[{"name":"exocrine system autoimmune disease","type":"exact"},{"name":"exocrine system hypersensitivity reaction type II disease","type":"exact"}],"termid":"MONDO:0000586","xrefs":{"Monarch":{"xref_id":"0000586"}}}


id: PBO:0005775
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NGG1 interacting factor 3 family, implicated in trancription","termid":"PBO:0005775"}


id: PBO:0050351
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 54","termid":"PBO:0050351"}


id: MOD:01770
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-threonine residue to O-palmitoyl-L-threonine amide.","definition_xrefs":["RESID:AA0097#var","PubMed:8413602","RESID:AA0079#var"],"direct_ancestors":[{"relation_name":"has_functional_parent","term_name":"O-palmitoyl-L-threonine","termid":"MOD:00088"},{"relation_name":"has_functional_parent","term_name":"L-threonine amide","termid":"MOD:00106"},{"relation_name":"is_a","term_name":"O3-acylated L-threonine","termid":"MOD:02004"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"O-palmitoyl-L-threonine amide","synonyms":[{"name":"(2S,3R)-2-amino-3-(hexadecanoyloxy)butanamide","type":"exact"},{"name":"OPamThrN","type":"exact"}],"termid":"MOD:01770"}


id: GO:0034986
data:
  {"annotated_genes":["SJAG_03862","SJAG_01418"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[100902,114209],"is_not":false,"summary":null,"term":"GO:0034986"}]},"cv_name":"molecular_function","definition":"Directly binding to and delivering iron ions to a target protein.","definition_xrefs":["GOC:vk","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metallochaperone activity","termid":"GO:0016530"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01418":null,"SJAG_03862":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140104"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0140104"],"is_obsolete":false,"name":"iron chaperone activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-9854984","Reactome:R-HSA-9854405","Reactome:R-HSA-9866272"],"synonyms":[{"name":"iron carrier activity","type":"exact"}],"termid":"GO:0034986","terms_by_termid":{"GO:0034986":null}}


id: GO:0015816
data:
  {"annotated_genes":["SJAG_00626","SJAG_04984"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[66839],"is_not":false,"summary":null,"term":"GO:0015816"},{"annotations":[70279],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904983"}]},"cv_name":"biological_process","definition":"The directed movement of glycine, aminoethanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic cation transport","termid":"GO:0015695"},{"relation_name":"is_a","term_name":"neutral amino acid transport","termid":"GO:0015804"},{"relation_name":"is_a","term_name":"carboxylic acid transport","termid":"GO:0046942"},{"relation_name":"is_a","term_name":"nitrogen compound transport","termid":"GO:0071705"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00626":null,"SJAG_04984":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"glycine transport","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000108":null},"termid":"GO:0015816","terms_by_termid":{"GO:0015816":null,"GO:1904983":null}}


id: MONDO:0016160
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"monogenic epilepsy","termid":"MONDO:0015653"},{"relation_name":"is_a","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"X-linked intellectual disability-epilepsy syndrome","secondary_identifiers":["Orphanet:2076","GARD:16584","MEDGEN:1842841","UMLS:C5680771"],"termid":"MONDO:0016160","xrefs":{"Monarch":{"xref_id":"0016160"}}}


id: PBO:0076107
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syntaxin 12","termid":"PBO:0076107"}


id: MONDO:0002456
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete cervix carcinoma (obsolete MONDO:0002456)","termid":"MONDO:0002456","xrefs":{"Monarch":{"xref_id":"0002456"}}}


id: PBO:0038281
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase sequence feature types","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"genotype_interaction","termid":"PBO:0038281"}


id: PBO:0050855
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interactor of little elongation complex ELL subunit 2","termid":"PBO:0050855"}


id: MONDO:0014757
data:
  {"annotated_genes":["SJAG_04509"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86229],"is_not":false,"summary":null,"term":"MONDO:0014757"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"congenital hematological disorder","termid":"MONDO:0009332"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"},{"relation_name":"is_a","term_name":"syndromic constitutional thrombocytopenia","termid":"MONDO:0018795"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04509":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"macrothrombocytopenia-lymphedema-developmental delay-facial dysmorphism-camptodactyly syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:616737","Orphanet:487796","UMLS:C4225222","MEDGEN:906646","NANDO:2200985","GARD:17884"],"synonyms":[{"name":"TAKENOUCHI-Kosaki syndrome","type":"related"},{"name":"TKS","type":"related"},{"name":"Takenouchi-Kosaki syndrome","type":"exact"},{"name":"macrothrombocytopenia and intellectual disability syndrome","type":"related"},{"name":"macrothrombocytopenia and mental retardation syndrome","type":"related"}],"termid":"MONDO:0014757","terms_by_termid":{"MONDO:0014757":null},"xrefs":{"Monarch":{"xref_id":"0014757"}}}


id: PBO:0036423
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RhoGAP, GTPase activating protein Rga7","termid":"PBO:0036423"}


id: MOD:00347
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cross-links an L-cysteine residue and an L-threonine residue by a thioether bond to form 2-(S-L-cysteinyl)-D-allo-threonine.","definition_xrefs":["PubMed:3936839","RESID:AA0342","PubMed:12696888"],"direct_ancestors":[{"relation_name":"is_a","term_name":"stereoisomerized residue","termid":"MOD:00664"},{"relation_name":"is_a","term_name":"alpha-carbon thioether crosslinked residues","termid":"MOD:01992"},{"relation_name":"is_a","term_name":"crosslinked L-threonine residue","termid":"MOD:02056"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"2-(S-L-cysteinyl)-D-allo-threonine","synonyms":[{"name":"(2R,5S,6R)-2,5-diamino-5-carboxy-6-hydroxy-4-thiaheptanoic acid","type":"exact"},{"name":"(2S,3R)-2-amino-2-[(2R)-2-amino-2-carboxyethyl]sulfanyl-3-hydroxybutanoic acid","type":"exact"},{"name":"2-(L-cystein-S-yl)-D-allo-threonine","type":"exact"},{"name":"CROSSLNK 2-cysteinyl-D-allo-threonine (Cys-Thr)","type":"exact"},{"name":"alpha-(L-cystein-S-yl)-D-allo-threonine","type":"exact"}],"termid":"MOD:00347"}


id: MONDO:0005570
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id: MONDO:0958330
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  {"annotated_genes":["SJAG_02060"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87477],"is_not":false,"summary":null,"term":"MONDO:0958330"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"developmental and epileptic encephalopathy","termid":"MONDO:0100062"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02060":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"},{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0005027","MONDO:0700092"],"is_obsolete":false,"name":"developmental and epileptic encephalopathy 113","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:620772","MEDGEN:1859161","UMLS:C5935597"],"termid":"MONDO:0958330","terms_by_termid":{"MONDO:0958330":null},"xrefs":{"Monarch":{"xref_id":"0958330"}}}


id: MONDO:0032677
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"lissencephaly spectrum disorder with complex brainstem malformation","termid":"MONDO:0100472"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"lissencephaly 9 with complex brainstem malformation","secondary_identifiers":["MEDGEN:1681109","UMLS:C5193029","OMIM:618325","GARD:18007","DOID:0112228","Orphanet:572013"],"synonyms":[{"name":"LIS9","type":"related"},{"name":"LISSENCEPHALY 9 WITH COMPLEX BRAINSTEM MALFORMATION","type":"related"}],"termid":"MONDO:0032677","xrefs":{"Monarch":{"xref_id":"0032677"}}}


id: PBO:0039428
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"angiopoietin like 8","termid":"PBO:0039428"}


id: GO:0031328
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances, carried out by individual cells.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of cellular biosynthetic process (obsolete GO:0031328)","synonyms":[{"name":"activation of cellular biosynthetic process","type":"narrow"},{"name":"positive regulation of cellular anabolism","type":"exact"},{"name":"positive regulation of cellular biosynthesis","type":"exact"},{"name":"positive regulation of cellular formation","type":"exact"},{"name":"positive regulation of cellular synthesis","type":"exact"},{"name":"stimulation of cellular biosynthetic process","type":"narrow"},{"name":"up regulation of cellular biosynthetic process","type":"exact"},{"name":"up-regulation of cellular biosynthetic process","type":"exact"},{"name":"upregulation of cellular biosynthetic process","type":"exact"}],"termid":"GO:0031328"}


id: PBO:0055595
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3031","termid":"PBO:0055595"}


id: PBO:0048346
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyceraldehyde 3 phosphate dehydrogenase pseudogene 57","termid":"PBO:0048346"}


id: PBO:0066867
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 167","termid":"PBO:0066867"}


id: GO:0001870
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of complement activation by the lectin pathway.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of complement activation, lectin pathway","termid":"GO:0001868"},{"relation_name":"is_a","term_name":"positive regulation of innate immune response","termid":"GO:0045089"},{"relation_name":"is_a","term_name":"positive regulation of complement activation","termid":"GO:0045917"},{"relation_name":"positively_regulates","term_name":"complement activation, lectin pathway","termid":"GO:0001867"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of complement activation, lectin pathway","synonyms":[{"name":"activation of complement activation, lectin pathway","type":"narrow"},{"name":"positive regulation of complement cascade, lectin pathway","type":"exact"},{"name":"stimulation of complement activation, lectin pathway","type":"narrow"},{"name":"up regulation of complement activation, lectin pathway","type":"exact"},{"name":"up-regulation of complement activation, lectin pathway","type":"exact"},{"name":"upregulation of complement activation, lectin pathway","type":"exact"}],"termid":"GO:0001870"}


id: MONDO:0022394
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"dysplasia of cervix","termid":"MONDO:0006736"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cervical intraepithelial neoplasia","secondary_identifiers":["GARD:9244","SCTID:285636001","UMLS:C0206708","MEDGEN:60214","NCIT:C3782"],"synonyms":[{"name":"Cervical Dysplasia","type":"related"},{"name":"Cervical Intraepithelial Neoplasia","type":"related"},{"name":"Cervical Intraepithelial Neoplasm","type":"related"},{"name":"Cervical Intraepithelial Neoplasms","type":"related"},{"name":"Cervical intraepithelial neoplasia","type":"related"},{"name":"Cervix Intraepithelial Neoplasia","type":"related"},{"name":"Cervix Uteri Intraepithelial Neoplasia","type":"related"},{"name":"Intraepithelial Neoplasia of Cervix","type":"related"},{"name":"Intraepithelial Neoplasia of Cervix Uteri","type":"related"},{"name":"Intraepithelial Neoplasia of Uterine Cervix","type":"related"},{"name":"Intraepithelial Neoplasia of the Cervix","type":"related"},{"name":"Intraepithelial Neoplasia of the Cervix Uteri","type":"related"},{"name":"Intraepithelial Neoplasia of the Uterine Cervix","type":"related"},{"name":"Intraepithelial Neoplasia, Cervical","type":"related"},{"name":"Intraepithelial Neoplasm, Cervical","type":"related"},{"name":"Intraepithelial Neoplasms, Cervical","type":"related"},{"name":"NEOPL CERVICAL INTRAEPITHELIAL","type":"related"},{"name":"Neoplasia, Cervical Intraepithelial","type":"related"},{"name":"Neoplasm, Cervical Intraepithelial","type":"related"},{"name":"Neoplasms, Cervical Intraepithelial","type":"related"},{"name":"Uterine Cervix Intraepithelial Neoplasia","type":"related"}],"termid":"MONDO:0022394","xrefs":{"Monarch":{"xref_id":"0022394"}}}


id: PBO:0061791
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"outer dynein arm docking complex subunit 2 pseudogene 1","termid":"PBO:0061791"}


id: MONDO:1010605
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital hypothyroidism that occurs in goat.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital hypothyroidism, non-human animal","termid":"MONDO:1010057"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital hypothyroidism, goat","secondary_identifiers":["OMIA:000536-9925"],"termid":"MONDO:1010605","xrefs":{"Monarch":{"xref_id":"1010605"}}}


id: PBO:0045976
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EH domain containing 2","termid":"PBO:0045976"}


id: PBO:0081869
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 808","termid":"PBO:0081869"}


id: SO:0001509
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute of a change in the structure or number of a chromosomes.","direct_ancestors":[{"relation_name":"is_a","term_name":"alteration_attribute","termid":"SO:0001508"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosomal_variation_attribute","synonyms":[{"name":"chromosomal variation attribute","type":"exact"}],"termid":"SO:0001509"}


id: FYPO:0005177
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the modification of a wobble base uridine residue in a tRNA to 2-thiouridine is abolished.","definition_xrefs":["GO:0003143","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished tRNA modification","termid":"FYPO:0008344"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000294","FYPO:0006551","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abolished tRNA wobble position uridine thiolation","synonyms":[{"name":"abolished tRNA wobble position uridine thiolation during mitotic cell cycle","type":"related"},{"name":"abolished tRNA wobble position uridine thiolation during vegetative growth","type":"exact"},{"name":"abolished wobble position s2U biosynthesis","type":"exact"},{"name":"tRNA wobble position uridine thiolation abolished","type":"exact"}],"termid":"FYPO:0005177"}


id: FYPO:0005229
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription from one or more RNA polymerase II promoters occurs to a lower extent than normal.","definition_xrefs":["PMID:17339332","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased transcription during vegetative growth","termid":"FYPO:0000781"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000294","FYPO:0006551"],"is_obsolete":false,"name":"decreased transcription from RNA polymerase II promoter during vegetative growth","synonyms":[{"name":"decreased transcription from RNA pol II promoter during vegetative growth","type":"exact"},{"name":"decreased transcription from RNA polymerase II promoter during mitotic cell cycle","type":"related"},{"name":"reduced transcription from RNA polymerase II promoter","type":"exact"}],"termid":"FYPO:0005229"}


id: GO:0003729
data:
  {"annotated_genes":["SJAG_00425","SJAG_04946","SJAG_02477","SJAG_01650","SJAG_00563","SJAG_04163","SJAG_04782","SJAG_01469","SJAG_03922","SJAG_05276","SJAG_03283","SJAG_02036","SJAG_00759","SJAG_04919","SJAG_01741","SJAG_01813","SJAG_00338","SJAG_02243","SJAG_03214","SJAG_04022","SJAG_03696","SJAG_04824","SJAG_00147","SJAG_00391","SJAG_00324","SJAG_02043","SJAG_04310","SJAG_02381","SJAG_01301","SJAG_04360","SJAG_00639","SJAG_03157","SJAG_01015","SJAG_02207","SJAG_01882","SJAG_04405","SJAG_03594","SJAG_00833","SJAG_01222","SJAG_02622","SJAG_16457","SJAG_04084","SJAG_00713","SJAG_03113","SJAG_04640","SJAG_00992","SJAG_04214","SJAG_04081","SJAG_03533","SJAG_01412","SJAG_04686","SJAG_05003","SJAG_04825","SJAG_04818","SJAG_04427","SJAG_04772","SJAG_03995","SJAG_05009","SJAG_02722","SJAG_01529","SJAG_00686","SJAG_03176","SJAG_04230","SJAG_01830","SJAG_00749","SJAG_00259","SJAG_02239","SJAG_03674","SJAG_01988","SJAG_00786","SJAG_01819","SJAG_01843","SJAG_02037","SJAG_00670","SJAG_02894","SJAG_04682","SJAG_02879","SJAG_05322","SJAG_01954","SJAG_02638","SJAG_03983","SJAG_03476","SJAG_00195","SJAG_01852","SJAG_02829","SJAG_02097","SJAG_05010","SJAG_02573","SJAG_02554","SJAG_01919","SJAG_04271","SJAG_04056","SJAG_04407","SJAG_04880","SJAG_00523","SJAG_04738","SJAG_01366","SJAG_02663","SJAG_03853","SJAG_04480","SJAG_01440","SJAG_02628","SJAG_05218","SJAG_04589","SJAG_04160","SJAG_01317","SJAG_00513","SJAG_04385","SJAG_01249","SJAG_01008","SJAG_01717","SJAG_03498","SJAG_00474"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[63302,65689,70105,70111,70183,70389,70699,71160,71756,72077,72245,72286,72341,72473,72542,72623,72748,72795,72877,72943,72985,73017,73104,73478,73481,73693,74074,74131,74191,74236,74292,74325,74435,74451,74475,74588,75322,75430,75549,75646,75741,75901,76115,76286,76412,76509,76738,76976,77006,77369,77604,77700,77885,77909,78208,78310,78759,78834,78947,79033,79268,79435,79517,79582,79707,79928,80035,88641,89135,94327,95510,95702,98411,98462,100373,103031,103529,103953,104350,106209,111142,113610,114283,114680,115994,118456,119004],"is_not":false,"summary":null,"term":"GO:0003729"},{"annotations":[79057,105245,74703,79120,71591,72046,79851,110258,72839,76934],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035925"},{"annotations":[111903,70890,119249,88728,100421,73325,70869,78628,79256,76774,89811,74991,97433],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003730"},{"annotations":[100785],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0048027"},{"annotations":[91881],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098808"},{"annotations":[74150],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990825"}]},"cv_name":"molecular_function","definition":"Binding to messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns.","definition_xrefs":["SO:0000234","GOC:kmv","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA 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binding","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0000499"],"synonyms":[{"name":"base pairing with mRNA","type":"narrow"}],"termid":"GO:0003729","terms_by_termid":{"GO:0003729":null,"GO:0003730":null,"GO:0035925":null,"GO:0048027":null,"GO:0098808":null,"GO:1990825":null}}


id: PR:G2TRQ0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- tam13 gene.","definition_xrefs":["PRO:DNx","UniProtKB:G2TRQ0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein tam13 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC56F2.15","synonyms":[{"name":"Spom972h-tam13","type":"exact"},{"name":"transcripts altered in meiosis protein 13 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:G2TRQ0"}


id: MONDO:1012005
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"alloimmune hemolytic anemia of the newborn, non-human animal","termid":"MONDO:1011684"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alloimmune hemolytic anemia of the newborn, dog","secondary_identifiers":["OMIA:000028-9615"],"termid":"MONDO:1012005","xrefs":{"Monarch":{"xref_id":"1012005"}}}


id: MONDO:0859246
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"leukodystrophy","termid":"MONDO:0019046"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"leukodystrophy, childhood-onset, remitting","secondary_identifiers":["OMIM:619864","MEDGEN:1804145","UMLS:C5676979"],"termid":"MONDO:0859246","xrefs":{"Monarch":{"xref_id":"0859246"}}}


id: GO:0033994
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (1->4)-beta-D-glucuronan = an oligosaccharide with 4-deoxy-beta-D-gluc-4-enuronosyl end + (1->4)-beta-D-glucuronan. This reaction is the eliminative cleavage of (1->4)-beta-D-glucuronans to give oligosaccharides with 4-deoxy-beta-D-gluc-4-enuronosyl groups at their non-reducing ends. Complete degradation of glucuronans results in the formation of tetrasaccharides.","definition_xrefs":["EC:4.2.2.14"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on polysaccharides","termid":"GO:0016837"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"glucuronan lyase activity","secondary_identifiers":["MetaCyc:4.2.2.14-RXN"],"synonyms":[{"name":"(1,4)-beta-D-glucuronan lyase activity","type":"related"}],"termid":"GO:0033994"}


id: GO:0045111
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Cytoskeletal structure made from intermediate filaments, typically organized in the cytosol as an extended system that stretches from the nuclear envelope to the plasma membrane. Some intermediate filaments run parallel to the cell surface, while others traverse the cytosol; together they form an internal framework that helps support the shape and resilience of the cell.","definition_xrefs":["ISBN:0716731363"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoskeleton","termid":"GO:0005856"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"intermediate filament cytoskeleton","termid":"GO:0045111"}


id: GO:1901150
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving vistamycin.","definition_xrefs":["UniPathway:UPA00972","GOC:yaf","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyol metabolic process","termid":"GO:0019751"},{"relation_name":"is_a","term_name":"aminoglycoside antibiotic metabolic process","termid":"GO:0030647"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"vistamycin metabolic process","synonyms":[{"name":"ribostamycin metabolic process","type":"exact"},{"name":"ribostamycin metabolism","type":"exact"},{"name":"vistamycin metabolism","type":"exact"}],"termid":"GO:1901150"}


id: GO:0106063
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with folate and transmitting the signal from one side of the membrane to the other by activating an associated G-protein, initiating a change in cell activity.","definition_xrefs":["PMID:26906738"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor activity","termid":"GO:0004930"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"G protein-coupled folate receptor activity","synonyms":[{"name":"G-protein coupled folate receptor activity","type":"exact"},{"name":"G-protein coupled folic acid receptor activity","type":"exact"}],"termid":"GO:0106063"}


id: SO:0001785
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An alteration of the genome that leads to a change in the structure of one or more chromosomes.","direct_ancestors":[{"relation_name":"is_a","term_name":"sequence_alteration","termid":"SO:0001059"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"structural_alteration","synonyms":[{"name":"structural alteration","type":"exact"}],"termid":"SO:0001785"}


id: PBO:0070796
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L12 pseudogene 26","termid":"PBO:0070796"}


id: PBO:0030964
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H3-K9_trimethylation_at_centromere_inner_repeat","termid":"PBO:0030964"}


id: PBO:0114537
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial DUF3818 and PXA domain conserved fungal protein, potential lipid transport protein implicated in membrane organization, ergosterol distribution","termid":"PBO:0114537"}


id: PBO:0065825
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB5 interacting factor","termid":"PBO:0065825"}


id: GO:0019161
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: an alpha,omega-diamine + 2-oxoglutarate = an omega-aminoaldehyde + L-glutamate.","definition_xrefs":["EC:2.6.1.29"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016769"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674","GO:0016769"],"is_obsolete":false,"name":"diamine transaminase activity","secondary_identifiers":["MetaCyc:DIAMTRANSAM-RXN","RHEA:18217"],"synonyms":[{"name":"amine transaminase activity","type":"related"},{"name":"amine-ketoacid transaminase activity","type":"related"},{"name":"diamine aminotransferase activity","type":"exact"},{"name":"diamine-ketoglutaric transaminase activity","type":"related"},{"name":"diamine:2-oxoglutarate aminotransferase activity","type":"related"}],"termid":"GO:0019161"}


id: MONDO:0002667
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An adenocarcinoma that arises from the gallbladder. It is characterized by the presence of signet ring malignant epithelial cells.","definition_xrefs":["NCIT:C5745"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signet ring cell carcinoma","termid":"MONDO:0005092"},{"relation_name":"is_a","term_name":"gallbladder adenocarcinoma","termid":"MONDO:0006215"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0002515","MONDO:0004992"],"is_obsolete":false,"name":"gallbladder signet ring cell adenocarcinoma","secondary_identifiers":["DOID:3499","MEDGEN:232228","UMLS:C1333758"],"synonyms":[{"name":"gall bladder signet ring cell carcinoma","type":"exact"},{"name":"gallbladder signet Ring cell carcinoma","type":"exact"},{"name":"signet Ring cell carcinoma of gallbladder","type":"exact"},{"name":"signet Ring cell carcinoma of the gallbladder","type":"exact"}],"termid":"MONDO:0002667","xrefs":{"Monarch":{"xref_id":"0002667"}}}


id: PBO:0082740
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the RSC chromatin remodeling complex; essential for viability and mitotic growth; homolog of SWI/SNF subunit Swi3p, but unlike Swi3p, does not activate transcription of reporters","termid":"PBO:0082740"}


id: GO:0051084
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of assisting in the correct noncovalent folding of newly formed polypeptides or folding intermediates of polypeptides that have exited the ribosome and/or have been stabilized and transferred by other chaperone proteins. This process could involve several cycles of ATP hydrolysis.","definition_xrefs":["GOC:rb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"'de novo' protein folding","termid":"GO:0006458"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006457"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0051604"}],"interesting_parent_ids":["GO:0010467","GO:0051604","GO:0006457","GO:0008150"],"is_obsolete":false,"name":"'de novo' post-translational protein folding","secondary_identifiers":["Reactome:R-HSA-391251"],"synonyms":[{"name":"'de novo' posttranslational protein folding","type":"exact"}],"termid":"GO:0051084"}


id: GO:0018123
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The transfer, from NAD, of ADP-ribose to peptidyl-cysteine to form peptidyl-S-(ADP-ribosyl)-L-cysteine.","definition_xrefs":["RESID:AA0169"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-cysteine ADP-ribosylation (obsolete GO:0018123)","termid":"GO:0018123"}


id: PBO:0073664
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal-induced proliferation-associated 1","termid":"PBO:0073664"}


id: PBO:0038749
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin related protein 1A","termid":"PBO:0038749"}


id: GO:0140928
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A homeostatic process involved in the maintenance of non-mineral tissue, by preventing mineralization of non-skeletal tissue.","definition_xrefs":["PMID:21490328","PMID:30030150"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tissue homeostasis","termid":"GO:0001894"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"inhibition of non-skeletal tissue mineralization","synonyms":[{"name":"inhibition of ectopic tissue mineralization","type":"narrow"}],"termid":"GO:0140928"}


id: GO:0100046
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates arginine biosynthetic process.","definition_xrefs":["GOC:cjm","GOC:obol"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of arginine biosynthetic process by transcription from RNA polymerase II promoter (obsolete GO:0100046)","termid":"GO:0100046"}


id: GO:0042842
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of D-xylose, a naturally occurring plant polysaccharide.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pentose biosynthetic process","termid":"GO:0019322"},{"relation_name":"is_a","term_name":"D-xylose metabolic process","termid":"GO:0042732"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"D-xylose biosynthetic process","synonyms":[{"name":"D-xylose anabolism","type":"exact"},{"name":"D-xylose biosynthesis","type":"exact"},{"name":"D-xylose formation","type":"exact"},{"name":"D-xylose synthesis","type":"exact"}],"termid":"GO:0042842"}


id: PBO:0071945
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S4X pseudogene 22","termid":"PBO:0071945"}


id: PBO:0013770
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Suppressor of loss of CAMP-dependent protein Kinase","termid":"PBO:0013770"}


id: GO:1900087
data:
  {"annotated_genes":["SJAG_03699","SJAG_02404","SJAG_01311","SJAG_02723","SJAG_02810","SJAG_04140","SJAG_01210","SJAG_03591","SJAG_01401","SJAG_03048","SJAG_03681","SJAG_01825"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[102693,106141,106300,106981,109509,117401],"is_not":false,"summary":null,"term":"GO:1900087"},{"annotations":[115670,109220,77064,92069,75137,116233],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007089"}]},"cv_name":"biological_process","definition":"Any signaling pathway that increases or activates a cell cycle cyclin-dependent protein kinase to modulate the switch from G1 phase to S phase of the mitotic cell cycle.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of mitotic cell cycle phase transition","termid":"GO:1901992"},{"relation_name":"is_a","term_name":"positive regulation of cell cycle G1/S phase transition","termid":"GO:1902808"},{"relation_name":"is_a","term_name":"regulation of G1/S transition of mitotic cell cycle","termid":"GO:2000045"},{"relation_name":"positively_regulates","term_name":"G1/S transition of mitotic cell cycle","termid":"GO:0000082"}],"gene_count":12,"genes_by_uniquename":{"SJAG_01210":null,"SJAG_01311":null,"SJAG_01401":null,"SJAG_01825":null,"SJAG_02404":null,"SJAG_02723":null,"SJAG_02810":null,"SJAG_03048":null,"SJAG_03591":null,"SJAG_03681":null,"SJAG_03699":null,"SJAG_04140":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0044772"},{"rel_name":"positively_regulates","termid":"GO:0044772"},{"rel_name":"positively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044772","GO:0007049"],"is_obsolete":false,"name":"positive regulation of G1/S transition of mitotic cell cycle","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"activation of G1/S transition of mitotic cell cycle","type":"narrow"},{"name":"up regulation of G1/S transition of mitotic cell cycle","type":"exact"},{"name":"up-regulation of G1/S transition of mitotic cell cycle","type":"exact"},{"name":"upregulation of G1/S transition of mitotic cell cycle","type":"exact"}],"termid":"GO:1900087","terms_by_termid":{"GO:0007089":null,"GO:1900087":null}}


id: PBO:0070782
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L12 pseudogene 12","termid":"PBO:0070782"}


id: PBO:0048925
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgin A8 family member V, pseudogene","termid":"PBO:0048925"}


id: GO:0007616
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The memory process that deals with the storage, retrieval and modification of information a long time (typically weeks, months or years) after receiving that information. This type of memory is typically dependent on gene transcription regulated by second messenger activation.","definition_xrefs":["ISBN:0582227089"],"direct_ancestors":[{"relation_name":"is_a","term_name":"memory","termid":"GO:0007613"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"long-term memory","secondary_identifiers":["Wikipedia:Long-term_memory"],"termid":"GO:0007616"}


id: MONDO:0016787
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An epithelioid trophoblastic tumor is an extremely rare gestational trophoblastic tumor (GTT) which generally occurs several years after pregnancy.","definition_xrefs":["Orphanet:254698"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gestational trophoblastic neoplasm","termid":"MONDO:0018944"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epithelioid trophoblastic tumor","secondary_identifiers":["DOID:3593","ICDO:9105/3","MEDGEN:266107","ONCOTREE:ETT","UMLS:C1266159","GARD:20750","NCIT:C6900","SCTID:609515005"],"synonyms":[{"name":"ETT","type":"related"},{"name":"epithelioid trophoblastic tumor","type":"exact"}],"termid":"MONDO:0016787","xrefs":{"Monarch":{"xref_id":"0016787"}}}


id: GO:1904516
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any apoptotic process in a myofibroblast cell.","definition_xrefs":["GOC:TermGenie","GO_REF:0000085","PMID:23026405"],"direct_ancestors":[{"relation_name":"is_a","term_name":"apoptotic process","termid":"GO:0006915"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"myofibroblast cell apoptotic process","synonyms":[{"name":"MFB apoptosis","type":"narrow"},{"name":"MFB apoptotic process","type":"exact"},{"name":"myofibroblast cell apoptosis","type":"narrow"}],"termid":"GO:1904516"}


id: GO:0044085
data:
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id: PBO:0056120
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id: PR:O94317
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id: FYPO:0003212
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id: PBO:0055333
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id: GO:1990875
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id: PBO:0064783
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id: PBO:0057789
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id: GO:0062100
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id: PBO:0049772
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id: PBO:0057524
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id: GO:0090366
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id: PBO:0069086
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id: PBO:0030391
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id: PBO:0001338
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id: PR:Q9US37
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id: GO:0008395
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id: PBO:0052272
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id: MONDO:0013385
data:
  {"annotated_genes":["SJAG_00731"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87349],"is_not":false,"summary":null,"term":"MONDO:0013385"}]},"cv_name":"mondo","definition":"Any Treacher-Collins syndrome in which the cause of the disease is a mutation in the POLR1D gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Treacher-Collins syndrome","termid":"MONDO:0002457"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00731":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"Treacher Collins syndrome 2","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C3150983","MEDGEN:462333","OMIM:613717","DOID:0080790","GARD:15698"],"synonyms":[{"name":"POLR1D Treacher-Collins syndrome","type":"exact"},{"name":"TCS2","type":"related"},{"name":"TREACHER COLLINS syndrome 2","type":"related"},{"name":"Treacher Collins syndrome 2","type":"exact"},{"name":"Treacher Collins syndrome type 2","type":"exact"},{"name":"Treacher-Collins syndrome caused by mutation in POLR1D","type":"exact"}],"termid":"MONDO:0013385","terms_by_termid":{"MONDO:0013385":null},"xrefs":{"Monarch":{"xref_id":"0013385"}}}


id: MOD:01248
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that is produced by reaction of iodouridine monophosphate with an L-tyrosine residue to form an ether linkage.","definition_xrefs":["PubMed:11567090","PubMed:6540775","Unimod:292#Y","PubMed:11112526"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iodouridine monophosphate derivatized residue","termid":"MOD:00611"},{"relation_name":"is_a","term_name":"modified L-tyrosine residue","termid":"MOD:00919"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iodouridine monophosphate derivatized tyrosine","synonyms":[{"name":"Cross-link of (Iodo)-uracil MP with W,F,Y","type":"related"},{"name":"IodoU-AMP","type":"related"}],"termid":"MOD:01248"}


id: FYPO:0003478
data:
  {"alleles_by_uniquename":{"SJAG_01330:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01330","name":"mad2delta","uniquename":"SJAG_01330:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[119695,119913],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004318"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype that affects signal transduction. Signal transduction is the process in which a signal is conveyed to trigger a change in the activity or state of a cell. It begins with reception of a signal and ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. A phenotype may affect one or more steps in one or more signal transduction pathways.","definition_xrefs":["GO:0007165","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation phenotype","termid":"FYPO:0000145"},{"relation_name":"is_a","term_name":"cellular response phenotype","termid":"FYPO:0000298"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01330":null},"genotype_count":1,"genotypes_by_uniquename":{"mad2delta":{"display_name":"mad2delta","display_uniquename":"mad2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01330:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000298"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000298"],"is_obsolete":false,"name":"signal transduction phenotype","references_by_uniquename":{"PMID:21802294":null,"PMID:32109380":null},"single_locus_annotated_genes":["SJAG_01330"],"single_locus_genotype_uniquenames":["mad2delta"],"synonyms":[{"name":"fission yeast signal transduction phenotype","type":"exact"}],"termid":"FYPO:0003478","terms_by_termid":{"FYECO:0000162":null,"FYPO:0004318":null}}


id: PBO:0074300
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLX1 homolog A, structure-specific endonuclease subunit","termid":"PBO:0074300"}


id: PATO:0002211
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A curvature quality inhering in a bearer by virtue of the bearer's being curved backward or inward.","definition_xrefs":["merriam-webster:http://www.merriam-webster.com/dictionary/recurved"],"direct_ancestors":[{"relation_name":"is_a","term_name":"curved","termid":"PATO:0000406"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"recurved","termid":"PATO:0002211"}


id: MONDO:0011932
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any hypotrichosis in which the cause of the disease is a mutation in the DSG4 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hypotrichosis","termid":"MONDO:0003037"},{"relation_name":"is_a","term_name":"hypotrichosis simplex","termid":"MONDO:0018914"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypotrichosis 6","secondary_identifiers":["MEDGEN:335812","GARD:15423","MESH:C564312","OMIM:607903","DOID:0110703","UMLS:C1842839"],"synonyms":[{"name":"DSG4 hypotrichosis","type":"exact"},{"name":"HYPT6","type":"exact"},{"name":"Htl","type":"related"},{"name":"LAH1","type":"exact"},{"name":"Lah1","type":"exact"},{"name":"autosomal recessive localised hypotrichosis","type":"exact"},{"name":"autosomal recessive localized hypotrichosis","type":"exact"},{"name":"hypotrichosis 6","type":"exact"},{"name":"hypotrichosis caused by mutation in DSG4","type":"exact"},{"name":"hypotrichosis type 6","type":"exact"},{"name":"hypotrichosis, localized, autosomal recessive","type":"related"},{"name":"hypotrichosis, localized, autosomal recessive 1","type":"exact"},{"name":"monilethrix-like hypotrichosis","type":"exact"}],"termid":"MONDO:0011932","xrefs":{"Monarch":{"xref_id":"0011932"}}}


id: PBO:0077481
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 201","termid":"PBO:0077481"}


id: GO:0102361
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: esculetin + UDP-alpha-D-glucose = 4-O-beta-D-glucosyl-esculetin + UDP + H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete esculetin 4-O-beta-glucosyltransferase activity (obsolete GO:0102361)","termid":"GO:0102361"}


id: FYPO:0002819
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 9 of histone H3 in telomeric regions occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H3-K9 acetylation during vegetative growth","termid":"FYPO:0000892"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0002274","FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"increased histone H3-K9 acetylation at telomere during vegetative growth","synonyms":[{"name":"increased histone H3-K9 acetylation at telomere during mitotic cell cycle","type":"related"},{"name":"increased histone H3-K9 acetylation at telomeric region during vegetative growth","type":"exact"},{"name":"increased histone H3K9 acetylation at telomere during vegetative growth","type":"exact"},{"name":"increased telomeric histone H3K9 acetylation during vegetative growth","type":"exact"}],"termid":"FYPO:0002819"}


id: PBO:0085115
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nucleolar DEAD-box protein required for ribosome assembly and function; including synthesis of 60S ribosomal subunits; constituent of 66S pre-ribosomal particles","termid":"PBO:0085115"}


id: GO:2000301
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of synaptic vesicle exocytosis.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of regulated secretory pathway","termid":"GO:1903306"},{"relation_name":"is_a","term_name":"regulation of synaptic vesicle exocytosis","termid":"GO:2000300"},{"relation_name":"negatively_regulates","term_name":"synaptic vesicle exocytosis","termid":"GO:0016079"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0023052","GO:0016192","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"negative regulation of synaptic vesicle exocytosis","termid":"GO:2000301"}


id: PATO:0001148
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001148 relative resistance value (obsolete PATO:0001148)","termid":"PATO:0001148"}


id: GO:0033006
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of mast cell activation as part of an immune response.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of immune effector process","termid":"GO:0002699"},{"relation_name":"is_a","term_name":"regulation of mast cell activation","termid":"GO:0033003"},{"relation_name":"is_a","term_name":"regulation of immune response","termid":"GO:0050776"},{"relation_name":"regulates","term_name":"mast cell activation involved in immune response","termid":"GO:0002279"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of mast cell activation involved in immune response","synonyms":[{"name":"regulation of mast cell activation during immune response","type":"related"}],"termid":"GO:0033006"}


id: MONDO:0000472
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rheumatic heart disease (obsolete MONDO:0000472)","termid":"MONDO:0000472","xrefs":{"Monarch":{"xref_id":"0000472"}}}


id: FYPO:0005370
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which occurrence of errors, usually small deletions, upon repair of double-strand breaks in DNA by nonhomologous end joining is increased.","definition_xrefs":["PomBase:mah","PMID:11226171"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal double-strand break repair via nonhomologous end joining","termid":"FYPO:0003661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000293","FYPO:0000298","FYPO:0000002"],"is_obsolete":false,"name":"decreased fidelity of double-strand break repair via nonhomologous end joining","termid":"FYPO:0005370"}


id: PATO:0002233
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A spatial quality inhering in a bearer by virtue of the bearer's being located far (not close to) in space in relation to another entity.","definition_xrefs":["PATOC:PM"],"direct_ancestors":[{"relation_name":"is_a","term_name":"position","termid":"PATO:0000140"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"far from","synonyms":[{"name":"distant from","type":"exact"},{"name":"remote from","type":"exact"}],"termid":"PATO:0002233"}


id: GO:0052554
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of the immune response of the symbiont organism; the immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by organism of symbiont immune response (obsolete GO:0052554)","synonyms":[{"name":"modulation by organism of symbiont immune response","type":"exact"}],"termid":"GO:0052554"}


id: GO:0050439
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-oxoglutarate + glyoxylate + H+ = 2-hydroxy-3-oxoadipate + CO2.","definition_xrefs":["EC:2.2.1.5","RHEA:14341"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transketolase or transaldolase activity","termid":"GO:0016744"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016744"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0003824","GO:0016744"],"is_obsolete":false,"name":"2-hydroxy-3-oxoadipate synthase activity","secondary_identifiers":["KEGG_REACTION:R00474","MetaCyc:2-HYDROXY-3-OXOADIPATE-SYNTHASE-RXN"],"synonyms":[{"name":"2-hydroxy-3-oxoadipate glyoxylate-lyase (carboxylating) activity","type":"related"},{"name":"2-hydroxy-3-oxoadipate synthetase activity","type":"related"},{"name":"2-oxoglutarate:glyoxylate succinaldehydetransferase (decarboxylating)","type":"related"},{"name":"alpha-ketoglutaric-glyoxylic carboligase activity","type":"related"},{"name":"oxoglutarate: glyoxylate carboligase activity","type":"related"},{"name":"oxoglutarate:glyoxylate carboligase activity","type":"related"}],"termid":"GO:0050439"}


id: PBO:0050785
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5-hydroxytryptamine receptor 2B","termid":"PBO:0050785"}


id: PBO:0041975
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCDC15 divergent transcript","termid":"PBO:0041975"}


id: PBO:0087777
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit Vb of cytochrome c oxidase; cytochrome c oxidase is the terminal member of the mitochondrial inner membrane electron transport chain; Cox5Bp is predominantly expressed during anaerobic growth while its isoform Va (Cox5Ap) is expressed during aerobic growth; COX5B has a paralog, COX5A, that arose from the whole genome duplication","termid":"PBO:0087777"}


id: PBO:0050509
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homeobox C9","termid":"PBO:0050509"}


id: GO:0046559
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: an alpha-D-glucuronoside + H2O = an alcohol + D-glucuronate.","definition_xrefs":["EC:3.2.1.139"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016798"}],"interesting_parent_ids":["GO:0003674","GO:0016798","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"alpha-glucuronidase activity","secondary_identifiers":["MetaCyc:3.2.1.139-RXN","RHEA:20005"],"synonyms":[{"name":"alpha-D-glucosiduronate glucuronohydrolase activity","type":"related"},{"name":"alpha-glucosiduronase activity","type":"related"}],"termid":"GO:0046559"}


id: GO:0035206
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of hemocyte proliferation. Hemocytes are blood cells associated with a hemocoel (the cavity containing most of the major organs of the arthropod body) which are involved in defense and clotting of hemolymph, but not involved in transport of oxygen. An example of this is found in Drosophila melanogaster.","definition_xrefs":["GOC:bf","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of immune system process","termid":"GO:0002682"},{"relation_name":"is_a","term_name":"regulation of cell population proliferation","termid":"GO:0042127"},{"relation_name":"is_a","term_name":"regulation of developmental process","termid":"GO:0050793"},{"relation_name":"is_a","term_name":"regulation of multicellular organismal process","termid":"GO:0051239"},{"relation_name":"regulates","term_name":"hemocyte proliferation","termid":"GO:0035172"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of hemocyte proliferation","synonyms":[{"name":"regulation of arthropod blood cell proliferation","type":"exact"}],"termid":"GO:0035206"}


id: PR:O59753
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DNA repair protein complementing XP-A cells that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02497","PANTHER:PTHR10142:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA repair protein rad14 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC649.03","secondary_identifiers":["UniProtKB:O59753"],"synonyms":[{"name":"Spom972h-XPA","type":"exact"},{"name":"XP-A family homolog rhp14 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O59753"}


id: PBO:0058360
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4733","termid":"PBO:0058360"}


id: FYPO:0005312
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which establishment of mitotic sister chromatid cohesion is normal (i.e. indistinguishable from wild type). Establishment of mitotic sister chromatid cohesion is the process in which the sister chromatids of a replicated chromosome become joined along the entire length of the chromosome during S phase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah","GO:0034087"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal mitotic cell cycle process","termid":"FYPO:0002741"},{"relation_name":"is_a","term_name":"normal cellular component organization","termid":"FYPO:0006003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000257","FYPO:0001312"],"is_obsolete":false,"name":"normal establishment of mitotic sister chromatid cohesion","synonyms":[{"name":"normal establishment of mitotic chromosome cohesion","type":"exact"},{"name":"normal establishment of mitotic sister chromatid cohesion during vegetative growth","type":"exact"},{"name":"normal establishment of sister chromatid cohesion during mitotic cell cycle","type":"related"}],"termid":"FYPO:0005312"}


id: PR:Q9P7Z3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A methyltransferase-like protein 10 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02530","PANTHER:PTHR12843:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein-lysine N-methyltransferase efm4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC839.14c","secondary_identifiers":["UniProtKB:Q9P7Z3"],"synonyms":[{"name":"Spom972h-METTL10","type":"exact"},{"name":"elongation factor methyltransferase 4 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"secretion and early endocytosis protein 1 homolog (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P7Z3"}


id: MONDO:0010893
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"malignant hyperthermia, susceptibility to","termid":"MONDO:0800188"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"malignant hyperthermia, susceptibility to, 4","secondary_identifiers":["MESH:C535697","UMLS:C1838102","MEDGEN:324944","OMIM:600467"],"synonyms":[{"name":"MHS4","type":"related"},{"name":"Mhs4","type":"related"},{"name":"malignant hyperpyrexia susceptibility type 4","type":"related"},{"name":"malignant hyperthermia susceptibility 4","type":"exact"},{"name":"malignant hyperthermia susceptibility type 4","type":"related"},{"name":"malignant hyperthermia, susceptibility to, 4","type":"exact"},{"name":"malignant hyperthermia, susceptibility to, type 4","type":"exact"}],"termid":"MONDO:0010893","xrefs":{"Monarch":{"xref_id":"0010893"}}}


id: PBO:0086926
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pyruvate carboxylase isoform; cytoplasmic enzyme that converts pyruvate to oxaloacetate; differentially regulated than isoform Pyc2p; mutations in the human homolog are associated with lactic acidosis; PYC1 has a paralog, PYC2, that arose from the whole genome duplication","termid":"PBO:0086926"}


id: MONDO:0015204
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Microlissencephaly describes a heterogenous group of a rare cortical malformations characterized by lissencephaly in combination with severe congenital microcephaly, presenting with spasticity, severe developmental delay, and seizures and with survival varying from days to years.","definition_xrefs":["Orphanet:1083"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lissencephaly spectrum disorders","termid":"MONDO:0018838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"microlissencephaly","secondary_identifiers":["UMLS:C1956147","GARD:16555","MEDGEN:365439","DOID:0112234","icd11.foundation:169315445"],"termid":"MONDO:0015204","xrefs":{"Monarch":{"xref_id":"0015204"}}}


id: PBO:0068174
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 481","termid":"PBO:0068174"}


id: MONDO:0009412
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A condition that develops in people who do not consume an adequate amount of vitamin C in their diet. Although scurvy is relatively rare in the United States, it continues to be a problem in malnourished populations around the world (such as impoverished, underdeveloped third world countries). Early features of the condition include general weakness, fatigue and aching limbs. If left untreated, more serious problems can develop such as anemia, gum disease, and skin hemorrhages. Symptoms generally develop after at least 3 months of severe or total vitamin C deficiency. Scurvy can be cured with vitamin C supplements taken by mouth. Once recovery is complete, dietary modifications to ensure the 'recommended daily intake' of vitamin C is reached will prevent relapse. Except in the case of severe dental disease, permanent damage from scurvy does not usually occur.","direct_ancestors":[{"relation_name":"is_a","term_name":"vitamin deficiency disorder","termid":"MONDO:0024298"},{"relation_name":"is_a","term_name":"carbohydrate metabolism disease","termid":"MONDO:0037792"},{"relation_name":"is_a","term_name":"disorder of organic acid metabolism","termid":"MONDO:0045022"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0037792","MONDO:0005066"],"is_obsolete":false,"name":"scurvy","secondary_identifiers":["DOID:13724","MedDRA:10047623","DOID:13577","OMIM:240400","SCTID:76169001","MESH:D001206","ICD10CM:E54","icd11.foundation:708602629","MedDRA:10039768","MESH:D012614","NCIT:C35010","EFO:1001169","ICD9:267","MEDGEN:20684","UMLS:C0036474"],"synonyms":[{"name":"Gulo, nonfunctional","type":"related"},{"name":"L-gulonolactone oxidase pseudogene","type":"related"},{"name":"L-gulonolactone oxidase, nonfunctional","type":"related"},{"name":"ascorbic acid deficiency","type":"exact"},{"name":"deficiency of vitamin C","type":"exact"},{"name":"hypoascorbemia","type":"related"},{"name":"scorbutus","type":"related"},{"name":"scurvy","type":"exact"},{"name":"vitamin C deficiency","type":"exact"},{"name":"vitamin C, inability to synthesise","type":"related"},{"name":"vitamin C, inability to synthesize","type":"related"}],"termid":"MONDO:0009412","xrefs":{"Monarch":{"xref_id":"0009412"}}}


id: GO:0000491
data:
  {"annotated_genes":["SJAG_00752","SJAG_04355","SJAG_01567","SJAG_03036","SJAG_03551","SJAG_03125","SJAG_05679","SJAG_05223"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[98268,104368,68277,80033,76630,73136],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000492"},{"annotations":[76988,80550],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000493"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of proteins and a snoRNA to form a small nucleolar ribonucleoprotein (snoRNP) complex.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-RNA complex assembly","termid":"GO:0022618"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00752":null,"SJAG_01567":null,"SJAG_03036":null,"SJAG_03125":null,"SJAG_03551":null,"SJAG_04355":null,"SJAG_05223":null,"SJAG_05679":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0065003","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"small nucleolar ribonucleoprotein complex assembly","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"snoRNP assembly","type":"exact"}],"termid":"GO:0000491","terms_by_termid":{"GO:0000492":null,"GO:0000493":null}}


id: FYECO:0000147
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Experiments were performed in defined medium containing sucrose, salts and water. May be supplemented with a set of amino acids as per the auxotrophic requirements of the strain.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping defined medium","termid":"FYECO:0000013"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sucrose MM","synonyms":[{"name":"sucrose minimal medium","type":"exact"}],"termid":"FYECO:0000147"}


id: PBO:0073114
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"short chain dehydrogenase/reductase family 42E, member 1 pseudogene 2","termid":"PBO:0073114"}


id: PR:Q10497
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC26F1.11 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10497"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C26F1.11 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC26F1.11","synonyms":[{"name":"Spom972h-SPAC26F1.11","type":"exact"}],"termid":"PR:Q10497"}


id: FYPO:0006017
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing urea.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002060"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0002057","FYPO:0002060","FYPO:0000139","FYPO:0000257","FYPO:0002058"],"is_obsolete":false,"name":"normal growth on urea","synonyms":[{"name":"normal cell population growth in presence of urea","type":"exact"},{"name":"normal cell population growth on urea","type":"exact"},{"name":"normal vegetative cell population growth on urea","type":"exact"}],"termid":"FYPO:0006017"}


id: PBO:0055051
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2466","termid":"PBO:0055051"}


id: GO:0047176
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1,2,3,6-tetrakis-O-galloyl-beta-D-glucose + 1-O-galloyl-beta-D-glucose = 1,2,3,4,6-pentakis-O-galloyl-beta-D-glucose + D-glucose.","definition_xrefs":["RHEA:19109","EC:2.3.1.143"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyltransferase activity, transferring groups other than amino-acyl groups","termid":"GO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016746","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"beta-glucogallin-tetrakisgalloylglucose O-galloyltransferase activity","secondary_identifiers":["MetaCyc:2.3.1.143-RXN","KEGG_REACTION:R04498"],"synonyms":[{"name":"1-O-galloyl-beta-D-glucose:1,2,3,6-tetrakis-O-galloyl-beta-D-glucose 4-O-galloyltransferase activity","type":"related"},{"name":"beta-glucogallin-tetragalloylglucose 4-galloyltransferase activity","type":"related"},{"name":"beta-glucogallin:1,2,3,6-tetra-O-galloyl-beta-D-glucose 4-O-galloyltransferase activity","type":"related"},{"name":"beta-glucogallin:1,2,3,6-tetra-O-galloylglucose 4-O-galloyltransferase activity","type":"related"}],"termid":"GO:0047176"}


id: PBO:0003734
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit L51 (predicted)","termid":"PBO:0003734"}


id: MONDO:0025487
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Acquired defect of cellular immunity that occurs in mice infected with mouse leukemia viruses (Mulv). The syndrome shows striking similarities with human aids and is characterized by lymphadenopathy, profound immunosuppression, enhanced susceptibility to opportunistic infections, and B-cell lymphomas.","definition_xrefs":["MESH:D016183"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rodent disease","termid":"MONDO:0024981"},{"relation_name":"is_a","term_name":"immune system disorder, non-human animal","termid":"MONDO:0700106"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"murine acquired immunodeficiency syndrome","synonyms":[{"name":"AIDS, murine","type":"related"},{"name":"MAIDS","type":"related"},{"name":"murine AIDS","type":"related"},{"name":"murine AIDSs","type":"related"},{"name":"murine acquired immune deficiency syndrome","type":"related"},{"name":"murine acquired immuno deficiency syndrome","type":"related"},{"name":"murine acquired immuno-deficiency syndrome","type":"related"}],"termid":"MONDO:0025487","xrefs":{"Monarch":{"xref_id":"0025487"}}}


id: GO:0007560
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures derived from an imaginal disc are generated and organized. The imaginal discs are epithelial infoldings in the larvae of holometabolous insects that develop into adult appendages (legs, antennae, wings, etc.) during metamorphosis from larval to adult form.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"animal organ morphogenesis","termid":"GO:0009887"},{"relation_name":"part_of","term_name":"imaginal disc development","termid":"GO:0007444"},{"relation_name":"part_of","term_name":"metamorphosis","termid":"GO:0007552"},{"relation_name":"part_of","term_name":"instar larval or pupal morphogenesis","termid":"GO:0048707"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"imaginal disc morphogenesis","secondary_identifiers":["GO:0007452"],"synonyms":[{"name":"imaginal disc metamorphosis","type":"exact"}],"termid":"GO:0007560"}


id: GO:0031478
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A myosin complex containing a dimer of class VIII myosin heavy chains and associated light chains. Myosin VIII is predicted to be dimeric, and contain an unusual 100-190 residue N-terminal extension prior to their motor domains, 3-4 IQ motifs, a short region (~70 residues) of predicted alpha-helical coiled coil and a C-terminal domain.","definition_xrefs":["PMID:25247701"],"direct_ancestors":[{"relation_name":"is_a","term_name":"unconventional myosin complex","termid":"GO:0016461"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0015629"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0015629"],"is_obsolete":false,"name":"myosin VIII complex","termid":"GO:0031478"}


id: MOD:01279
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Other -","definition_xrefs":["PubMed:11283024","Unimod:253#H","PubMed:1443554"],"direct_ancestors":[{"relation_name":"is_a","term_name":"crotonaldehyde","termid":"MOD:00576"},{"relation_name":"is_a","term_name":"modified L-histidine residue","termid":"MOD:00909"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"crotonaldehyde - site H","synonyms":[{"name":"Crotonaldehyde","type":"related"}],"termid":"MOD:01279"}


id: GO:0000177
data:
  {"annotated_genes":["SJAG_00854","SJAG_01521","SJAG_04084","SJAG_03179","SJAG_04818","SJAG_04824","SJAG_04153","SJAG_04006","SJAG_01818","SJAG_04321"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[71596,72051,72844,73564,74700,74924,75408,76651,78023,116205],"is_not":false,"summary":null,"term":"GO:0000177"}]},"cv_name":"cellular_component","definition":"A ribonuclease complex that has 3-prime to 5-prime processive hydrolytic exoribonuclease activity producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured.","definition_xrefs":["PMID:17174896","PMID:26726035","PMID:20531386"],"direct_ancestors":[{"relation_name":"is_a","term_name":"exosome (RNase complex)","termid":"GO:0000178"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00854":null,"SJAG_01521":null,"SJAG_01818":null,"SJAG_03179":null,"SJAG_04006":null,"SJAG_04084":null,"SJAG_04153":null,"SJAG_04321":null,"SJAG_04818":null,"SJAG_04824":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"cytoplasmic exosome (RNase complex)","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"cytoplasmic exosome (ribonuclease complex)","type":"exact"},{"name":"cytoplasmic exosome multienzyme ribonuclease complex","type":"exact"},{"name":"prokaryotic exosome multienzyme ribonuclease complex","type":"exact"}],"termid":"GO:0000177","terms_by_termid":{"GO:0000177":null}}


id: GO:0036238
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: gallate + O2 = (1E)-4-oxobut-1-ene-1,2,4-tricarboxylate.","definition_xrefs":["PMID:16030014","EC:1.13.11.57"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"gallate dioxygenase activity","secondary_identifiers":["RHEA:28927","KEGG_REACTION:R09565","MetaCyc:GALLATE-DIOXYGENASE-RXN"],"termid":"GO:0036238"}


id: MONDO:0005369
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A slow growing neuroendocrine tumor, composed of uniform, round, or polygonal cells having monotonous, centrally located nuclei and small nucleoli, infrequent mitoses, and no necrosis. The tumor may show a variety of patterns, such as solid, trabecular, and acinar. Electron microscopy shows small secretory granules. Immunohistochemical studies reveal NSE, as well as chromogranin immunoreactivity. Malignant histology (cellular pleomorphism, hyperchromatic nuclei, prominent nucleoli, necrosis, and mitoses) can occasionally be seen. Such cases may have an aggressive clinical course. Gastrointestinal tract and lung are common sites of involvement.","definition_xrefs":["NCIT:C2915"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuroendocrine neoplasm","termid":"MONDO:0019496"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carcinoid tumor","secondary_identifiers":["EFO:0004243","HP:0100570","NANDO:2200396","MESH:D002276","ICD9:209.60","ICDO:8241/3","ICDO:8240/3","SCTID:443492008","UMLS:C0007095","MEDGEN:2838"],"synonyms":[{"name":"NET G1","type":"exact"},{"name":"carcinoid","type":"exact"},{"name":"carcinoid tumor","type":"exact"},{"name":"carcinoid tumor (disease)","type":"exact"},{"name":"carcinoid tumour (disease)","type":"exact"},{"name":"neuroendocrine neoplasm G1","type":"exact"},{"name":"neuroendocrine tumor G1","type":"exact"},{"name":"neuroendocrine tumour G1","type":"exact"}],"termid":"MONDO:0005369","xrefs":{"Monarch":{"xref_id":"0005369"}}}


id: MONDO:0025377
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A sometimes fatal asfivirus infection of pigs, characterized by fever, cough, diarrhea, hemorrhagic lymph nodes, and edema of the gallbladder. It is transmitted between domestic swine by direct contact, ingestion of infected meat, or fomites, or mechanically by biting flies or soft ticks (genus Ornithodoros).","definition_xrefs":["MESH:D000357"],"direct_ancestors":[{"relation_name":"is_a","term_name":"swine disease","termid":"MONDO:0024990"},{"relation_name":"is_a","term_name":"tick-borne infectious disease, non-human animal","termid":"MONDO:0700201"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"African swine fever","synonyms":[{"name":"swine fever, African","type":"related"},{"name":"wart Hog disease","type":"related"},{"name":"wart-Hog disease","type":"related"},{"name":"wart-Hog diseases","type":"related"}],"termid":"MONDO:0025377","xrefs":{"Monarch":{"xref_id":"0025377"}}}


id: PR:Q9P7G4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A metalloendopeptidase OMA1, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR22726:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial metalloendopeptidase OMA1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAP14E8.04","secondary_identifiers":["UniProtKB:Q9P7G4"],"synonyms":[{"name":"SPAP14E8.04","type":"related"},{"name":"Spom972h-OMA1","type":"exact"}],"termid":"PR:Q9P7G4"}


id: MONDO:0018049
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Kaposi sarcoma (obsolete MONDO:0018049)","termid":"MONDO:0018049","xrefs":{"Monarch":{"xref_id":"0018049"}}}


id: MONDO:1012832
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any hyperkeratosis that occurs in dogs due to a mutation in the DSG1 gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"},{"relation_name":"is_a","term_name":"hyperkeratosis, non-human animal","termid":"MONDO:1012976"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"palmoplantar hyperkeratosis, DSG1-related, dog","secondary_identifiers":["OMIA:002266-9615"],"synonyms":[{"name":"HFH","type":"exact"},{"name":"hereditary footpad hyperkeratosis, dog","type":"related"},{"name":"hyperkeratosis, palmoplantar, DSG1-related, dog","type":"exact"}],"termid":"MONDO:1012832","xrefs":{"Monarch":{"xref_id":"1012832"}}}


id: FYPO:0006905
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle checkpoint phenotype in which a mitotic cell size control checkpoint is normal (i.e. indistinguishable from wild type). A mitotic cell size control checkpoint normally prevents cell cycle progression from G1 to S phase until the cell reaches a certain size.","definition_xrefs":["GO:0031568","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal mitotic cell size control checkpoint","termid":"FYPO:0006904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001312","FYPO:0000298","FYPO:0001320","FYPO:0000631","FYPO:0000257"],"is_obsolete":false,"name":"normal mitotic G1 cell size control checkpoint","synonyms":[{"name":"normal G1 cell size control checkpoint during mitotic cell cycle","type":"exact"},{"name":"normal mitotic G1 cell size control checkpoint activation","type":"exact"},{"name":"normal mitotic G1 cell size control checkpoint during vegetative growth","type":"exact"}],"termid":"FYPO:0006905"}


id: GO:0001865
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a precursor cell type acquires the specialized features of a NK T cell.","definition_xrefs":["GOC:add","ISBN:0781735149","PMID:10704459"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-beta T cell differentiation","termid":"GO:0046632"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"NK T cell differentiation","synonyms":[{"name":"NK T cell development","type":"related"},{"name":"NK T lymphocyte differentiation","type":"exact"},{"name":"NK T-cell differentiation","type":"exact"},{"name":"NK T-lymphocyte differentiation","type":"exact"},{"name":"NKT cell differentiation","type":"exact"},{"name":"NT cell differentiation","type":"exact"},{"name":"natural T cell differentiation","type":"exact"},{"name":"natural killer T cell differentiation","type":"exact"}],"termid":"GO:0001865"}


id: PBO:0089612
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium transport factor","termid":"PBO:0089612"}


id: PBO:0070586
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 52","termid":"PBO:0070586"}


id: PBO:0039265
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aldehyde dehydrogenase 16 family member A1","termid":"PBO:0039265"}


id: SO:0001467
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A tag produced from a single sequencing read from a RACE product; typically a few hundred base pairs long.","definition_xrefs":["SO:nlw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"EST","termid":"SO:0000345"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RST","synonyms":[{"name":"RACE sequence tag","type":"exact"}],"termid":"SO:0001467"}


id: MONDO:0015607
data:
  {"annotated_genes":["SJAG_03635","SJAG_01465","SJAG_04663","SJAG_00786","SJAG_03286","SJAG_04324","SJAG_02035"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86313,86308,86314,86312,86311,86309,86310],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010767"}]},"cv_name":"mondo","definition":"Male sterility due to chromosome Y deletion is characterized by a severe deficiency of spermatogenesis. Chromosome Y deletions are a frequent genetic cause of male infertility.","definition_xrefs":["Orphanet:1646"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndrome caused by partial chromosomal deletion","termid":"MONDO:0000761"},{"relation_name":"is_a","term_name":"male infertility","termid":"MONDO:0005372"},{"relation_name":"is_a","term_name":"chromosome Y disorder","termid":"MONDO:0700028"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00786":null,"SJAG_01465":null,"SJAG_02035":null,"SJAG_03286":null,"SJAG_03635":null,"SJAG_04324":null,"SJAG_04663":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"partial chromosome Y deletion","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["SCTID:717158001","HGNC:11311","MESH:C536297","GARD:16574","MEDGEN:267211","UMLS:C1507149"],"synonyms":[{"name":"Male sterility due to chromosome Y deletion","type":"exact"},{"name":"Y-chromosome microdeletions","type":"related"},{"name":"partial deletion of Y","type":"related"},{"name":"partial deletion of Y chromosome short arm","type":"related"},{"name":"partial deletion of chromosome Y","type":"related"},{"name":"partial deletion of the long arm of the Y chromosome","type":"related"}],"termid":"MONDO:0015607","terms_by_termid":{"MONDO:0010767":null},"xrefs":{"Monarch":{"xref_id":"0015607"}}}


id: MONDO:0012427
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare autosomal dominant inherited disorder of connective tissue caused by mutations in either the TGFBR1 or TGFBR2 gene. Like Loeys-Dietz syndrome type I the disease is characterized by enlargement of the aorta and other arteries, and arterial tortuosity, but skeletal signs are typically less severe or absent in type 2. Skin abnormalities, such as velvety skin are often present in type 2.","definition_xrefs":["NCIT:C114768"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Loeys-Dietz syndrome","termid":"MONDO:0018954"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"Loeys-Dietz syndrome 2","secondary_identifiers":["GARD:10586","MEDGEN:382398","MESH:C537783","DOID:0070234","UMLS:C2674574","OMIM:610168"],"synonyms":[{"name":"LDS2","type":"related"},{"name":"Loeys-Dietz syndrome 2","type":"exact"},{"name":"Loeys-Dietz syndrome caused by mutation in TGFBR2","type":"exact"},{"name":"Loeys-Dietz syndrome type 2","type":"exact"},{"name":"Loeys-Dietz syndrome type II","type":"exact"},{"name":"Marfan syndrome, type II","type":"related"},{"name":"Marfan syndrome, type II, formerly","type":"related"},{"name":"TGFBR2 Loeys-Dietz syndrome","type":"exact"},{"name":"aortic aneurysm, familial thoracic 3","type":"related"}],"termid":"MONDO:0012427","xrefs":{"Monarch":{"xref_id":"0012427"}}}


id: MONDO:0002634
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A very rare malignant adipose tissue neoplasm that arises from the bone.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"osteosarcoma","termid":"MONDO:0009807"},{"relation_name":"is_a","term_name":"liposarcoma","termid":"MONDO:0005060"},{"relation_name":"is_a","term_name":"bone sarcoma","termid":"MONDO:0021054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"liposarcoma of bone","secondary_identifiers":["MEDGEN:231450","NCIT:C7598","UMLS:C1332581","DOID:3381"],"synonyms":[{"name":"bone liposarcoma","type":"exact"},{"name":"bone tissue liposarcoma","type":"exact"},{"name":"liposarcoma of bone","type":"exact"},{"name":"liposarcoma of bone tissue","type":"exact"},{"name":"liposarcoma of the bone","type":"exact"}],"termid":"MONDO:0002634","xrefs":{"Monarch":{"xref_id":"0002634"}}}


id: MONDO:0008147
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Osteogenesis imperfecta type II is a lethal type of osteogenesis imperfecta (OI), a genetic disorder characterized by increased bone fragility, low bone mass and susceptibility to bone fractures. Patients with type II present multiple rib and long bone fractures at birth, marked deformities, broad long bones, low density on skull X-rays, and dark sclera.","definition_xrefs":["Orphanet:216804"],"direct_ancestors":[{"relation_name":"is_a","term_name":"osteogenesis imperfecta and a reduction of bone mineral density.","termid":"MONDO:0800064"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"osteogenesis imperfecta type 2","secondary_identifiers":["MEDGEN:75673","icd11.foundation:2024049157","DOID:0110341","NCIT:C99001","MESH:C536042","GARD:10142","OMIM:166210","SCTID:86470003","UMLS:C0268358"],"synonyms":[{"name":"OI type 2","type":"exact"},{"name":"OI, type 2","type":"related"},{"name":"OI2","type":"exact"},{"name":"Perinatally lethal OI","type":"related"},{"name":"Vrolik type of osteogenesis imperfecta","type":"exact"},{"name":"lethal osteogenesis imperfecta","type":"exact"},{"name":"osteogenesis imperfecta congenita","type":"related"},{"name":"osteogenesis imperfecta congenita perinatal lethal form","type":"related"},{"name":"osteogenesis imperfecta congenita, perinatal lethal form","type":"related"},{"name":"osteogenesis imperfecta type 2","type":"exact"},{"name":"osteogenesis imperfecta type II","type":"exact"},{"name":"osteogenesis imperfecta, type 2","type":"related"},{"name":"osteogenesis imperfecta, type II","type":"related"},{"name":"perinatal lethal osteogenesis imperfecta congenita","type":"exact"}],"termid":"MONDO:0008147","xrefs":{"Monarch":{"xref_id":"0008147"}}}


id: GO:0120086
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = diphosphate + (3S)-(+)-asterisca-2(9),6-diene.","definition_xrefs":["PMID:27862766"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sesquiterpene synthase activity","termid":"GO:0010334"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"(3S)-(+)-asterisca-2(9),6-diene synthase activity","synonyms":[{"name":"asterisca-2(9),6-diene synthase activity","type":"broad"}],"termid":"GO:0120086"}


id: PBO:0047750
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"farnesyltransferase, CAAX box, alpha","termid":"PBO:0047750"}


id: MOD:00184
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-phenylalanine residue to L-3'-bromophenylalanine.","definition_xrefs":["RESID:AA0175","PubMed:9033387","PubMed:2076468"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monobrominated L-phenylalanine","termid":"MOD:00972"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-3'-bromophenylalanine","synonyms":[{"name":"(S)-2-amino-3-(3-bromophenyl)propanoic acid","type":"exact"},{"name":"3'BrPhe","type":"exact"},{"name":"Bromo","type":"related"},{"name":"L-3'-bromophenylalanine","type":"exact"},{"name":"bromination","type":"related"},{"name":"m-bromophenylalanine","type":"exact"},{"name":"meta-bromophenylalanine","type":"exact"}],"termid":"MOD:00184"}


id: MONDO:0000572
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A severe combined immunodeficiency that is the result of a mutation on Chromosome 6 RAG1 gene involving genetic rearrangement of both the T- and B-lymphocyte receptor genes.","definition_xrefs":["DOID:0060011"],"direct_ancestors":[{"relation_name":"is_a","term_name":"severe combined immunodeficiency","termid":"MONDO:0015974"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"recombinase activating gene 1 deficiency","synonyms":[{"name":"recombinase activating gene 1 deficiency","type":"exact"}],"termid":"MONDO:0000572","xrefs":{"Monarch":{"xref_id":"0000572"}}}


id: GO:0009608
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a symbiont, an organism living with an organism of a different species in close physical association. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["ISBN:0198506732","GOC:hb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to other organism","termid":"GO:0051707"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to symbiont","synonyms":[{"name":"response of host to symbiont","type":"related"}],"termid":"GO:0009608"}


id: PBO:0008038
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vitamin H transporter (predicted)","termid":"PBO:0008038"}


id: GO:0102632
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-scoulerine + [reduced NADPH--hemoprotein reductase] + O2 -> (S)-nandinine + [oxidized NADPH--hemoprotein reductase] + 2 H2O.","definition_xrefs":["RHEA:50364","GOC:pz","PMID:21094631","PMID:17250743"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water","termid":"GO:0016717"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"(S)-nandinine synthase activity","secondary_identifiers":["MetaCyc:RXN-15538","EC:1.14.19.73"],"termid":"GO:0102632"}


id: PBO:0065769
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"quinoid dihydropteridine reductase","termid":"PBO:0065769"}


id: MONDO:0011933
data:
  {"annotated_genes":["SJAG_03056"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87193],"is_not":false,"summary":null,"term":"MONDO:0011933"},{"annotations":[85737],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014543"}]},"cv_name":"mondo","definition":"A form of congenital disorders of N-linked glycosylation characterized by iris coloboma, cataract, infantile spasms, developmental delay and abnormal coagulation factors. The disease is caused by loss-of-function mutations in the gene ALG2 (9q31.1). Transmission is autosomal recessive.","definition_xrefs":["Orphanet:79326"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital disorder of glycosylation type I","termid":"MONDO:0005500"},{"relation_name":"is_a","term_name":"disorder of protein N-glycosylation","termid":"MONDO:0017740"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03056":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0024322"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0024322"],"is_obsolete":false,"name":"ALG2-congenital disorder of glycosylation","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C1842836","OMIM:607906","GARD:9836","MEDGEN:334618","DOID:0080561"],"synonyms":[{"name":"ALG2-CDG","type":"exact"},{"name":"ALG2-CDG (CDG-II)","type":"related"},{"name":"ALG2-congenital disorder of glycosylation","type":"exact"},{"name":"CDG 1I","type":"exact"},{"name":"CDG Ii","type":"exact"},{"name":"CDG syndrome type Ii","type":"exact"},{"name":"CDG1I","type":"exact"},{"name":"carbohydrate deficient glycoprotein syndrome type Ii","type":"exact"},{"name":"carbohydrate-deficient glycoprotein syndrome type 1I","type":"related"},{"name":"congenital disorder of glycosylation type 1i","type":"exact"},{"name":"congenital disorder of glycosylation type Ii","type":"exact"},{"name":"congenital disorder of glycosylation, type Ii","type":"exact"},{"name":"mannosyltransferase 2 deficiency","type":"exact"}],"termid":"MONDO:0011933","terms_by_termid":{"MONDO:0011933":null,"MONDO:0014543":null},"xrefs":{"Monarch":{"xref_id":"0011933"}}}


id: PR:P50523
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A cytochrome b-c1 complex subunit 8 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12119:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome b-c1 complex subunit 8 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1782.07","secondary_identifiers":["UniProtKB:P50523"],"synonyms":[{"name":"SPAC1782.07","type":"related"},{"name":"Spom972h-UQCRQ","type":"exact"},{"name":"complex III subunit 8 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ubiquinol-cytochrome c reductase complex 11 kDa protein (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ubiquinol-cytochrome c reductase complex ubiquinone-binding protein QP-C (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P50523"}


id: PBO:0058005
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3928","termid":"PBO:0058005"}


id: GO:0006265
data:
  {"annotated_genes":["SJAG_03567","SJAG_04816","SJAG_05193","SJAG_04418","SJAG_02394"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[59248,70794,72980,113508,119270],"is_not":false,"summary":null,"term":"GO:0006265"}]},"cv_name":"biological_process","definition":"The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number.","definition_xrefs":["ISBN:071673706X","ISBN:0935702490"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA metabolic process","termid":"GO:0006259"},{"relation_name":"is_a","term_name":"DNA conformation change","termid":"GO:0071103"}],"gene_count":5,"genes_by_uniquename":{"SJAG_02394":null,"SJAG_03567":null,"SJAG_04418":null,"SJAG_04816":null,"SJAG_05193":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006259","GO:0008150"],"is_obsolete":false,"name":"DNA topological change","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"DNA underwinding","type":"narrow"}],"termid":"GO:0006265","terms_by_termid":{"GO:0006265":null}}


id: GO:0043097
data:
  {"annotated_genes":["SJAG_05029","SJAG_04264"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[98061,114145],"is_not":false,"summary":null,"term":"GO:0043097"}]},"cv_name":"biological_process","definition":"Any process that generates a pyrimidine nucleoside, one of a family of organic molecules consisting of a pyrimidine base covalently bonded to a sugar ribose, from derivatives of it, without de novo synthesis.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine-containing compound salvage","termid":"GO:0008655"},{"relation_name":"is_a","term_name":"nucleoside salvage","termid":"GO:0043174"},{"relation_name":"is_a","term_name":"pyrimidine nucleoside biosynthetic process","termid":"GO:0046134"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04264":null,"SJAG_05029":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"pyrimidine nucleoside salvage","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-73614"],"termid":"GO:0043097","terms_by_termid":{"GO:0043097":null}}


id: PBO:0077523
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 238","termid":"PBO:0077523"}


id: PBO:0090898
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ASTRA complex WD repeat subunit Asa1","termid":"PBO:0090898"}


id: MONDO:0029148
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spermatogenic failure","termid":"MONDO:0004983"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"spermatogenic failure 34","secondary_identifiers":["DOID:0111911","MEDGEN:1648297","OMIM:618153","GARD:18407","UMLS:C4748403"],"synonyms":[{"name":"SPERMATOGENIC FAILURE 34","type":"related"},{"name":"SPGF34","type":"related"}],"termid":"MONDO:0029148","xrefs":{"Monarch":{"xref_id":"0029148"}}}


id: MONDO:0971031
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An acquired metabolic disease that is characterized by the endogenous production of ethanol produced through endogenous fermentation by fungi or bacteria in the gastrointestinal system, oral cavity, or urinary system and typically presents with the signs of alcohol intoxication.","definition_xrefs":["DOID:0081455"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acquired metabolic disease","termid":"MONDO:0006504"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"auto-brewery syndrome","secondary_identifiers":["MEDGEN:1853294","UMLS:C4552195"],"termid":"MONDO:0971031","xrefs":{"Monarch":{"xref_id":"0971031"}}}


id: GO:0045327
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The formation of a covalent cross-link between DNA and a peptidyl-tyrosine residue.","definition_xrefs":["GOC:jsg"],"gene_count":0,"genotype_count":0,"name":"obsolete protein-DNA covalent cross-linking via peptidyl-tyrosine (obsolete GO:0045327)","synonyms":[{"name":"DNA-protein covalent cross-linking via peptidyl-tyrosine","type":"exact"}],"termid":"GO:0045327"}


id: MONDO:0000480
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A focal dystonia of the pelvic floor muscles during attempted defecation.","definition_xrefs":["Wikipedia:Anismus"],"direct_ancestors":[{"relation_name":"is_a","term_name":"focal dystonia","termid":"MONDO:0000477"},{"relation_name":"is_a","term_name":"skeletal muscle disorder","termid":"MONDO:0020120"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0003441"}],"interesting_parent_ids":["MONDO:0003441"],"is_obsolete":false,"name":"anismus","secondary_identifiers":["SCTID:83605009","UMLS:C0267601","ICD9:569.49","DOID:0050839","MEDGEN:540810"],"synonyms":[{"name":"anal region skeletal muscle focal dystonia","type":"exact"},{"name":"dyskinetic puborectalis","type":"related"},{"name":"dyssynergic defecation","type":"related"},{"name":"focal dystonia of anal region skeletal muscle","type":"exact"},{"name":"puborectalis syndrome","type":"related"},{"name":"rectosphincteric dyssynergia","type":"related"},{"name":"spastic pelvic floor syndrome","type":"related"},{"name":"sphincteric disobedience syndrome","type":"related"}],"termid":"MONDO:0000480","xrefs":{"Monarch":{"xref_id":"0000480"}}}


id: PBO:0109516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2879","termid":"PBO:0109516"}


id: MONDO:0006869
data:
  {"annotated_genes":["SJAG_03689"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87035],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007681"}]},"cv_name":"mondo","definition":"Goiter characterized by discrete tissue mass(es) that may or may not produce thyroid hormones.","definition_xrefs":["NCIT:C131437"],"direct_ancestors":[{"relation_name":"is_a","term_name":"goiter","termid":"MONDO:0005397"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03689":null},"genotype_count":0,"is_obsolete":false,"name":"nodular goiter","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["EFO:1001062","MEDGEN:42271","HP:0005994","UMLS:C0018023","DOID:13197","MedDRA:10018495","MESH:D006044","SCTID:419153005"],"synonyms":[{"name":"goiter, nodular","type":"exact"},{"name":"nodular goiter","type":"exact"},{"name":"nodular goiter (disease)","type":"exact"},{"name":"nodular goitre (disease)","type":"exact"},{"name":"nodular goitre NOS","type":"related"}],"termid":"MONDO:0006869","terms_by_termid":{"MONDO:0007681":null},"xrefs":{"Monarch":{"xref_id":"0006869"}}}


id: PBO:0084316
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"JmjC domain family histone demethylase specific for H3-K36; similar to proteins found in human, mouse, drosophila, X. laevis, C. elegans, and S. pombe","termid":"PBO:0084316"}


id: FYPO:0003630
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which U2-type prespliceosome assembly is abolished. The U2-type prespliceosome is formed by association of the 5' splice site with the U1 snRNP, while the branch point sequence is recognized by the U2 snRNP, and also contains other proteins.","definition_xrefs":["PomBase:mah","GO:1903241","GO:0071004"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mRNA splicing, via spliceosome","termid":"FYPO:0000189"},{"relation_name":"is_a","term_name":"abnormal ribonucleoprotein complex assembly","termid":"FYPO:0003628"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000294"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0006551","FYPO:0000294","FYPO:0001320","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abolished U2-type prespliceosome assembly","synonyms":[{"name":"U2-type prespliceosome assembly abolished","type":"exact"},{"name":"abolished U2-type prespliceosome assembly during mitotic cell cycle","type":"related"},{"name":"abolished U2-type prespliceosome assembly during vegetative growth","type":"exact"}],"termid":"FYPO:0003630"}


id: PBO:0049433
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GUSB pseudogene 10","termid":"PBO:0049433"}


id: GO:0071969
data:
  {"annotated_genes":["SJAG_01835","SJAG_02222","SJAG_04483","SJAG_03587","SJAG_04666","SJAG_01288","SJAG_04771","SJAG_01290","SJAG_00218","SJAG_05285","SJAG_00876"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94787],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034413"},{"annotations":[91919,106432,74843,76195,116148,73413,113494,71250],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071970"},{"annotations":[92744,87833],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0140748"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving (1->3)-beta-D-glucans, compounds composed of glucose residues linked by (1->3)-beta-D-glucosidic bonds, found in the walls of fungi.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell wall (1->3)-beta-D-glucan metabolic process","termid":"GO:0034407"},{"relation_name":"is_a","term_name":"fungal-type cell wall beta-glucan metabolic process","termid":"GO:0070879"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00218":null,"SJAG_00876":null,"SJAG_01288":null,"SJAG_01290":null,"SJAG_01835":null,"SJAG_02222":null,"SJAG_03587":null,"SJAG_04483":null,"SJAG_04666":null,"SJAG_04771":null,"SJAG_05285":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"part_of","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0071554","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"fungal-type cell wall (1->3)-beta-D-glucan metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"fungal-type cell wall 1,3-beta-D-glucan metabolic process","type":"exact"},{"name":"fungal-type cell wall 1,3-beta-glucan metabolism","type":"exact"},{"name":"fungal-type cell wall beta-1,3 glucan metabolic process","type":"exact"},{"name":"fungal-type cell wall beta-1,3 glucan metabolism","type":"exact"}],"termid":"GO:0071969","terms_by_termid":{"GO:0034413":null,"GO:0071970":null,"GO:0140748":null}}


id: GO:0090038
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the frequency, rate, or extent of a series of reactions, mediated by the intracellular serine/threonine kinase protein kinase C, which occurs as a result of a single trigger reaction or compound.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein kinase C signaling","termid":"GO:0090036"},{"relation_name":"is_a","term_name":"negative regulation of intracellular signal transduction","termid":"GO:1902532"},{"relation_name":"negatively_regulates","term_name":"protein kinase C signaling","termid":"GO:0070528"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of protein kinase C signaling","synonyms":[{"name":"negative regulation of protein kinase C signaling cascade","type":"related"},{"name":"negative regulation of protein kinase C signalling cascade","type":"related"}],"termid":"GO:0090038"}


id: PBO:0029099
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_cell_population_growth_on_methionine_sulfur_source","termid":"PBO:0029099"}


id: PBO:0045872
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 beta 2 pseudogene 5","termid":"PBO:0045872"}


id: PBO:0090118
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GID complex subunit Gid4","termid":"PBO:0090118"}


id: GO:0002875
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of a chronic inflammatory response to an antigenic stimulus.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of chronic inflammatory response","termid":"GO:0002677"},{"relation_name":"is_a","term_name":"negative regulation of inflammatory response to antigenic stimulus","termid":"GO:0002862"},{"relation_name":"is_a","term_name":"regulation of chronic inflammatory response to antigenic stimulus","termid":"GO:0002874"},{"relation_name":"negatively_regulates","term_name":"chronic inflammatory response to antigenic stimulus","termid":"GO:0002439"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of chronic inflammatory response to antigenic stimulus","synonyms":[{"name":"down regulation of chronic inflammatory response to antigenic stimulus","type":"exact"},{"name":"down-regulation of chronic inflammatory response to antigenic stimulus","type":"exact"},{"name":"downregulation of chronic inflammatory response to antigenic stimulus","type":"exact"},{"name":"inhibition of chronic inflammatory response to antigenic stimulus","type":"narrow"}],"termid":"GO:0002875"}


id: PBO:0039942
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARID3B pseudogene 1","termid":"PBO:0039942"}


id: MONDO:0007759
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"familial hyperlipidemia","termid":"MONDO:0001336"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002525"}],"interesting_parent_ids":["MONDO:0002525","MONDO:0005066"],"is_obsolete":false,"name":"hyperlipidemia, familial combined, LPL related","secondary_identifiers":["GARD:15077","OMIM:144250","MEDGEN:6965","UMLS:C0020474"],"synonyms":[{"name":"FCHL","type":"related"},{"name":"combined hyperlipidemia, familial","type":"exact"},{"name":"familial combined hyperlipidemia","type":"related"},{"name":"hyperlipidemia, familial combined","type":"related"}],"termid":"MONDO:0007759","xrefs":{"Monarch":{"xref_id":"0007759"}}}


id: MONDO:0004047
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign or malignant neoplasm that affects the sphenoid sinus. Representative examples of benign neoplasms include Schneiderian papilloma and salivary gland-type adenoma. Representative examples of malignant neoplasms include carcinoma and lymphoma.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"skull base neoplasm","termid":"MONDO:0002785"},{"relation_name":"is_a","term_name":"paranasal sinus neoplasm","termid":"MONDO:0005289"},{"relation_name":"is_a","term_name":"disorder of facial skeleton","termid":"MONDO:0023369"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sphenoidal sinus neoplasm","secondary_identifiers":["NCIT:C6792","MONDO:0021216","DOID:6947","UMLS:C0345676","MEDGEN:87511","SCTID:126679002"],"synonyms":[{"name":"neoplasm of sphenoid sinus","type":"exact"},{"name":"neoplasm of sphenoidal sinus","type":"exact"},{"name":"neoplasm of the sphenoid sinus","type":"exact"},{"name":"neoplasm of the sphenoidal sinus","type":"exact"},{"name":"sphenoid sinus neoplasm","type":"exact"},{"name":"sphenoid sinus tumor","type":"exact"},{"name":"sphenoid sinus tumour","type":"exact"},{"name":"sphenoidal sinus neoplasm","type":"exact"},{"name":"sphenoidal sinus neoplasm (disease)","type":"exact"},{"name":"sphenoidal sinus tumor","type":"exact"},{"name":"sphenoidal sinus tumour","type":"exact"},{"name":"tumor of sphenoid sinus","type":"exact"},{"name":"tumor of sphenoidal sinus","type":"exact"},{"name":"tumor of the sphenoid sinus","type":"exact"},{"name":"tumor of the sphenoidal sinus","type":"exact"},{"name":"tumour of sphenoid sinus","type":"exact"},{"name":"tumour of sphenoidal sinus","type":"exact"},{"name":"tumour of the sphenoid sinus","type":"exact"},{"name":"tumour of the sphenoidal sinus","type":"exact"}],"termid":"MONDO:0004047","xrefs":{"Monarch":{"xref_id":"0004047"}}}


id: MONDO:0020107
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete hemolytic anemia due to an erythrocyte nucleotide metabolism disorder (obsolete MONDO:0020107)","secondary_identifiers":["Orphanet:98374"],"synonyms":[{"name":"hemolytic anemia due to an erythroenzymopathy","type":"exact"}],"termid":"MONDO:0020107","xrefs":{"Monarch":{"xref_id":"0020107"}}}


id: PBO:0066315
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBPMS antisense RNA 1","termid":"PBO:0066315"}


id: PBO:0062909
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"purinergic receptor P2X 2","termid":"PBO:0062909"}


id: MONDO:0005040
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign or malignant, gonadal or extragonadal neoplasm that originates from germ cells. Representative examples include teratoma, seminoma, embryonal carcinoma, and yolk sac tumor.","definition_xrefs":["NCIT:C3708"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neoplasm","termid":"MONDO:0005070"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"germ cell tumor","secondary_identifiers":["MEDGEN:60030","DOID:2994","EFO:0000514","UMLS:C0205851"],"synonyms":[{"name":"germ cell cancer","type":"related"},{"name":"germ cell neoplasm","type":"exact"},{"name":"germ cell tumor","type":"exact"},{"name":"germ cells tumors","type":"related"},{"name":"germ cells tumours","type":"related"},{"name":"malignant tumour of the germ cell","type":"related"},{"name":"neoplasm of germ cell","type":"exact"},{"name":"neoplasm of the germ cell","type":"exact"},{"name":"tumor of germ cell","type":"exact"},{"name":"tumor of the germ cell","type":"exact"},{"name":"tumour of germ cell","type":"exact"},{"name":"tumour of the germ cell","type":"exact"}],"termid":"MONDO:0005040","xrefs":{"Monarch":{"xref_id":"0005040"}}}


id: MONDO:0002866
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pathological conditions in the duodenum region of the small intestine (intestine, small).","definition_xrefs":["MESH:D004378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"small intestine disorder","termid":"MONDO:0024635"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"duodenal disorder","secondary_identifiers":["SCTID:52182008","ICD9:537.89","UMLS:C0013289","DOID:4072","MEDGEN:8502","ICD9:537.9"],"synonyms":[{"name":"disease of duodenum","type":"exact"},{"name":"disease or disorder of duodenum","type":"exact"},{"name":"disorder of duodenum","type":"exact"},{"name":"duodenum disease","type":"exact"},{"name":"duodenum disease or disorder","type":"exact"},{"name":"duodenum disorder","type":"exact"}],"termid":"MONDO:0002866","xrefs":{"Monarch":{"xref_id":"0002866"}}}


id: GO:0010398
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving xylogalacturonan, a pectin characterized by a backbone of alpha-(1->4)-linked D-galacturonic acid residues substituted on C-3 with beta-D-xylopyranose residues.","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"galacturonan metabolic process","termid":"GO:0010393"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"xylogalacturonan metabolic process","synonyms":[{"name":"xylogalacturonan metabolism","type":"exact"}],"termid":"GO:0010398"}


id: GO:0071801
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of podosome assembly.","definition_xrefs":["GOC:mah","GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein-containing complex assembly","termid":"GO:0043254"},{"relation_name":"is_a","term_name":"regulation of organelle assembly","termid":"GO:1902115"},{"relation_name":"regulates","term_name":"podosome assembly","termid":"GO:0071800"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0008150","GO:0065003","GO:0044085"],"is_obsolete":false,"name":"regulation of podosome assembly","termid":"GO:0071801"}


id: PBO:0087274
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SET-domain lysine-N-methyltransferase; catalyzes the formation of dimethyllysine residues on the large ribosomal subunit proteins L23 (Rpl23Ap and Rpl23Bp) and monomethyllysine residues on L18 (Rps18Ap and Rps18Bp)","termid":"PBO:0087274"}


id: GO:0030712
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of border cell delamination.","definition_xrefs":["PMID:10822261"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell-cell adhesion","termid":"GO:0022409"},{"relation_name":"is_a","term_name":"regulation of border follicle cell delamination","termid":"GO:0030710"},{"relation_name":"is_a","term_name":"negative regulation of biological process","termid":"GO:0048519"},{"relation_name":"negatively_regulates","term_name":"border follicle cell delamination","termid":"GO:0030709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"positively_regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"negative regulation of border follicle cell delamination","synonyms":[{"name":"down regulation of border follicle cell delamination","type":"exact"},{"name":"down-regulation of border follicle cell delamination","type":"exact"},{"name":"downregulation of border follicle cell delamination","type":"exact"},{"name":"inhibition of border follicle cell delamination","type":"narrow"},{"name":"negative regulation of border cell delamination","type":"broad"}],"termid":"GO:0030712"}


id: PBO:0075703
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serum response factor","termid":"PBO:0075703"}


id: MOD:01716
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"The protein modification reporter fragment produced by an Proteome Sciences TMT6plex-126 reagent acylated residue.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"TMT6plex reporter+balance reagent acylated residue","termid":"MOD:01715"},{"relation_name":"derives_from","term_name":"cysTMT6plex reporter+balance reagent cysteine disulfide","termid":"MOD:01821"},{"relation_name":"is_a","term_name":"modification reporter fragment","termid":"MOD:01520"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMT6plex reporter fragment","synonyms":[{"name":"2,6-dimethyl-1-methylidenepiperidinium","type":"exact"},{"name":"cysTMT6plex reporter fragment","type":"exact"}],"termid":"MOD:01716"}


id: PBO:0068850
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 88, pseudogene","termid":"PBO:0068850"}


id: FYPO:0008028
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype observed in the vegetative growth phase of the life cycle in which the rate of acid phosphatase activation during phosphate starvation is decreased.","definition_xrefs":["PMID:35012333"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal regulation of catalytic activity","termid":"FYPO:0004916"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"decreased rate of acid phosphatase activation during phosphate starvation","synonyms":[{"name":"decreased acid phosphatase kinetics","type":"exact"}],"termid":"FYPO:0008028"}


id: MONDO:0015367
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Charlie M syndrome is a rare bone developmental disorder which belongs to a group of oromandibular limb hypogenesis syndromes that includes hypoglossia-hypodactyly and glossopalatine ankylosis. The major anomalies which occur commonly in this group are hypoplasia of the mandible, syndactyly and ectrodactyly, small mouth, cleft palate, hypodontia, and facial paralysis. Patients with Charlie M syndrome also present with hypertelorism, absent or conically crowned incisors, and variable degrees of hypodactyly of the hands and feet. There have been no further descriptions in the literature since 1976.","definition_xrefs":["Orphanet:1406"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome without intellectual disability","termid":"MONDO:0015161"},{"relation_name":"is_a","term_name":"oromandibular-limb hypogenesis syndrome","termid":"MONDO:0017139"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"Charlie M syndrome","secondary_identifiers":["UMLS:C4518555","MEDGEN:1379887","GARD:1261","icd11.foundation:1284734481","SCTID:733034007"],"termid":"MONDO:0015367","xrefs":{"Monarch":{"xref_id":"0015367"}}}


id: PBO:0084124
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Heterotrimeric nascent polypeptide-associated complex beta3 subunit; complex binds ribosomes via its beta-subunits in close proximity to nascent polypeptides; interacts with Caf130p of the CCR4-NOT complex; similar to human BTF3; BTT1 has a paralog, EGD1, that arose from the whole genome duplication","termid":"PBO:0084124"}


id: PBO:0089892
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane sugar transporter family","termid":"PBO:0089892"}


id: PBO:0048961
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycoprotein VI platelet","termid":"PBO:0048961"}


id: MONDO:0010436
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic X-linked intellectual disability Lubs type","termid":"MONDO:0010283"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"chromosome Xq28 duplication syndrome","secondary_identifiers":["OMIM:300815","GARD:15266","MESH:C567580","UMLS:C2749007","MEDGEN:411727"],"synonyms":[{"name":"chromosome Xq28 duplication syndrome","type":"exact"}],"termid":"MONDO:0010436","xrefs":{"Monarch":{"xref_id":"0010436"}}}


id: PBO:0017933
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Swi five-dependent recombination mediator Sfr1","termid":"PBO:0017933"}


id: GO:1904239
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of VCP-NPL4-UFD1 AAA ATPase complex assembly.","definition_xrefs":["GOC:TermGenie","GOC:bf","GO_REF:0000058","GOC:PARL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein-containing complex assembly","termid":"GO:0043254"},{"relation_name":"regulates","term_name":"VCP-NPL4-UFD1 AAA ATPase complex assembly","termid":"GO:1904210"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0065003","GO:0008150"],"is_obsolete":false,"name":"regulation of VCP-NPL4-UFD1 AAA ATPase complex assembly","synonyms":[{"name":"regulation of Cdc48p-Npl4p-Ufd1p AAA ATPase complex assembly","type":"narrow"},{"name":"regulation of Cdc48p-Npl4p-Ufd1p AAA ATPase complex formation","type":"narrow"},{"name":"regulation of VCP-NPL4-UFD1 AAA ATPase complex formation","type":"exact"},{"name":"regulation of p97-Ufd1-Npl4 complex assembly","type":"exact"},{"name":"regulation of p97-Ufd1-Npl4 complex formation","type":"exact"}],"termid":"GO:1904239"}


id: PBO:0060995
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nescient helix-loop-helix 2","termid":"PBO:0060995"}


id: MONDO:0005287
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Disorders in which there is a delay in development based on that expected for a given age level or stage of development. These impairments or disabilities originate before age 18, may be expected to continue indefinitely, and constitute a substantial impairment. Biological and nonbiological factors are involved in these disorders. (From American Psychiatric Glossary, 6th ed)","definition_xrefs":["MESH:D002658"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system disorder","termid":"MONDO:0005071"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"developmental disability","secondary_identifiers":["EFO:0003852"],"termid":"MONDO:0005287","xrefs":{"Monarch":{"xref_id":"0005287"}}}


id: GO:0017075
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a syntaxin-1 SNAP receptor.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syntaxin binding","termid":"GO:0019905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"syntaxin-1 binding","termid":"GO:0017075"}


id: PBO:0089589
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone demethylase SWIRM2","termid":"PBO:0089589"}


id: GO:0015224
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of biopterin from one side of a membrane to the other. Biopterin is a growth factor for certain protozoans and some insects; it is widely distributed in tissues and functions in a reduced form, tetrahydrobiopterin, as a hydroxylation coenzyme.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane transporter activity","termid":"GO:0022857"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"biopterin transmembrane transporter activity","synonyms":[{"name":"biopterin transporter activity","type":"related"}],"termid":"GO:0015224"}


id: GO:0030070
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of mature insulin by proteolysis of the precursor preproinsulin. The signal sequence is first cleaved from preproinsulin to form proinsulin; proinsulin is then cleaved to release the C peptide, leaving the A and B chains of mature insulin linked by disulfide bridges.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide hormone processing","termid":"GO:0016486"},{"relation_name":"is_a","term_name":"insulin metabolic process","termid":"GO:1901142"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0051604"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0051604"],"is_obsolete":false,"name":"insulin processing","secondary_identifiers":["Reactome:R-HSA-264876"],"termid":"GO:0030070"}


id: MONDO:0018833
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare idiopathic macular telangiectasia (obsolete MONDO:0018833)","secondary_identifiers":["Orphanet:482092"],"termid":"MONDO:0018833","xrefs":{"Monarch":{"xref_id":"0018833"}}}


id: PBO:0045685
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynein light chain LC8-type 1 pseudogene 5","termid":"PBO:0045685"}


id: PBO:0012053
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HMG box protein (predicted)","termid":"PBO:0012053"}


id: PBO:0083977
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glucosidase II beta subunit, forms a complex with alpha subunit Rot2p; involved in removal of two glucose residues from N-linked glycans during glycoprotein biogenesis in the ER; relocalizes from ER to cytoplasm upon DNA replication stress","termid":"PBO:0083977"}


id: PR:Q9P7A1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A PITH domain-containing protein 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02656"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PITH domain-containing protein P35G2.02 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP35G2.02","secondary_identifiers":["UniProtKB:Q9P7A1"],"synonyms":[{"name":"Spom972h-PITHD1","type":"exact"}],"termid":"PR:Q9P7A1"}


id: GO:1901147
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any mesenchymal cell apoptotic process that is involved in metanephric nephron morphogenesis.","definition_xrefs":["GOC:mtg_apoptosis","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesenchymal cell apoptotic process involved in metanephros development","termid":"GO:1900200"},{"relation_name":"is_a","term_name":"mesenchymal cell apoptotic process involved in nephron morphogenesis","termid":"GO:1901145"},{"relation_name":"part_of","term_name":"metanephric nephron morphogenesis","termid":"GO:0072273"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis","termid":"GO:1901147"}


id: GO:0032302
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A heterodimer involved in binding to and correcting insertion/deletion mutations. In human the complex consists of two subunits, MSH2 and MSH3.","definition_xrefs":["PMID:11005803"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mismatch repair complex","termid":"GO:0032300"},{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005634"],"is_obsolete":false,"name":"MutSbeta complex","synonyms":[{"name":"MMR complex","type":"broad"},{"name":"MSH2/MSH3 complex","type":"exact"}],"termid":"GO:0032302"}


id: PBO:0034772
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial dynamin family scission GTPase Dnm1","termid":"PBO:0034772"}


id: PBO:0067929
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 231","termid":"PBO:0067929"}


id: GO:1904930
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Any membrane that is part of an amphisome.","definition_xrefs":["GOC:bhm","GOC:TermGenie","GO_REF:0000064","PMID:17984323"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autophagosome membrane","termid":"GO:0000421"},{"relation_name":"part_of","term_name":"amphisome","termid":"GO:0044753"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005773"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0005773"],"is_obsolete":false,"name":"amphisome membrane","termid":"GO:1904930"}


id: GO:0070087
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a chromo shadow domain, a protein domain that is distantly related, and found in association with, the chromo domain.","definition_xrefs":["PMID:7667093","InterPro:IPR008251","GOC:BHF","GOC:vk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"chromo shadow domain binding","synonyms":[{"name":"chromoshadow domain binding","type":"exact"}],"termid":"GO:0070087"}


id: GO:0006128
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete oxidized glutathione reduction (obsolete GO:0006128)","synonyms":[{"name":"oxidized glutathione reduction","type":"exact"}],"termid":"GO:0006128"}


id: GO:0043828
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-methylaminomethyl-2-thiouridine + selenophosphate = 5-methylaminomethyl-2-selenouridine + phosphate (at the wobble position in tRNA).","definition_xrefs":["PMID:14594807","RHEA:42716"],"direct_ancestors":[{"relation_name":"is_a","term_name":"selenotransferase activity","termid":"GO:0016785"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a tRNA","termid":"GO:0140101"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0140098","GO:0016740","GO:0003824","GO:0140101"],"is_obsolete":false,"name":"tRNA 2-selenouridine synthase activity","secondary_identifiers":["MetaCyc:RXN0-2281","EC:2.9.1.3"],"termid":"GO:0043828"}


id: PBO:0070513
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L6 pseudogene 12","termid":"PBO:0070513"}


id: GO:0047618
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N(4)-benzoylagmatine + H2O = agmatine + benzoate.","definition_xrefs":["RHEA:15065","EC:3.5.1.40"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016810","GO:0003674","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"acylagmatine amidase activity","secondary_identifiers":["MetaCyc:ACYLAGMATINE-AMIDASE-RXN","KEGG_REACTION:R01425"],"synonyms":[{"name":"acylagmatine amidohydrolase activity","type":"related"},{"name":"acylagmatine deacylase activity","type":"related"},{"name":"benzoylagmatine amidohydrolase activity","type":"related"}],"termid":"GO:0047618"}


id: PBO:0113738
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BRCA1 associated deubiquitinase 1","termid":"PBO:0113738"}


id: GO:0062057
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transport of L-aspartate and fumarate across a membrane according to the reaction L-aspartate (out) + fumarate (in) = L-aspartate (in) + fumarate (out).","definition_xrefs":["PMID:29995997"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fumarate transmembrane transporter activity","termid":"GO:0015138"},{"relation_name":"is_a","term_name":"L-aspartate transmembrane transporter activity","termid":"GO:0015183"},{"relation_name":"is_a","term_name":"antiporter activity","termid":"GO:0015297"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"L-aspartate:fumarate antiporter activity","termid":"GO:0062057"}


id: PATO:0000300
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A mobility quality inhering in a bearer by virtue of the bearer's being incapable to move freely.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mobility","termid":"PATO:0000004"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immobile","synonyms":[{"name":"fixed","type":"related"}],"termid":"PATO:0000300"}


id: GO:0047983
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: beta-alanine + L-gamma-glutamyl-L-cysteine + ATP = gamma-L-glutamyl-L-cysteinyl-beta-alanine + ADP + 2 H+ + phosphate.","definition_xrefs":["EC:6.3.2.23","RHEA:17993"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-amino acid ligase activity","termid":"GO:0016881"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0003674","GO:0016874","GO:0003824"],"is_obsolete":false,"name":"homoglutathione synthase activity","secondary_identifiers":["KEGG_REACTION:R02741","MetaCyc:HOMOGLUTATHIONE-SYNTHASE-RXN"],"synonyms":[{"name":"beta-alanine specific hGSH synthetase activity","type":"related"},{"name":"gamma-L-glutamyl-L-cysteine:beta-alanine ligase (ADP-forming)","type":"related"},{"name":"homoglutathione synthetase activity","type":"related"}],"termid":"GO:0047983"}


id: FYPO:0000258
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cell phenotype that shows no detectable differences from normal during exponential growth.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete normal phenotype during exponential phase (obsolete FYPO:0000258)","synonyms":[{"name":"fission yeast normal phenotype during exponential phase","type":"exact"},{"name":"no phenotype in exponential phase","type":"exact"},{"name":"normal phenotype during exponential phase during mitotic cell cycle","type":"related"},{"name":"normal phenotype during exponential phase during vegetative growth","type":"exact"}],"termid":"FYPO:0000258"}


id: GO:0001079
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A transcription regulation process in which the presence of one nitrogen source leads to the modulation of the frequency, rate, or extent of transcription, from an RNA polymerase II promoter, of specific genes involved in the metabolism of other nitrogen sources.","definition_xrefs":["GOC:mah","GOC:txnOH","PMID:19104072"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of transcription by RNA polymerase II","termid":"GO:0006357"},{"relation_name":"is_a","term_name":"nitrogen catabolite regulation of transcription","termid":"GO:0090293"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006355"},{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0006351","GO:0010467","GO:0006355","GO:0008150"],"is_obsolete":false,"name":"nitrogen catabolite regulation of transcription from RNA polymerase II promoter","synonyms":[{"name":"regulation of transcription from RNA polymerase II promoter by nitrogen catabolites","type":"exact"}],"termid":"GO:0001079"}


id: PBO:0053899
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1187","termid":"PBO:0053899"}


id: MONDO:0006227
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A well differentiated, low grade neuroendocrine tumor (carcinoid tumor) that arises from the stomach. The vast majority of cases arise from the corpus-fundus region. The mitotic count is less than 2 per 10 HPF and/or the Ki67 index is equal to or less than 2 percent. It may be associated with autoimmune chronic atrophic gastritis, multiple endocrine neoplasia type 1, or it may be sporadic.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carcinoid tumor","termid":"MONDO:0005369"},{"relation_name":"is_a","term_name":"gastric neuroendocrine tumor, well differentiated, low or intermediate grade","termid":"MONDO:0015062"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"gastric neuroendocrine tumor G1","secondary_identifiers":["EFO:1000275","NCIT:C4635","UMLS:C0349529","MEDGEN:83885"],"synonyms":[{"name":"gastric ECL cell NET","type":"exact"},{"name":"gastric ECL cell NET G1","type":"exact"},{"name":"gastric ECL cell, histamine-producing NET","type":"exact"},{"name":"gastric ECL-cell carcinoid tumor","type":"exact"},{"name":"gastric ECL-cell carcinoid tumour","type":"exact"},{"name":"gastric NET G1","type":"exact"},{"name":"gastric carcinoid tumor","type":"exact"},{"name":"gastric carcinoid tumour","type":"exact"},{"name":"gastric enterochromaffin-like cell carcinoid tumor","type":"exact"},{"name":"gastric enterochromaffin-like cell carcinoid tumour","type":"exact"},{"name":"gastric enterochromaffin-like cell neuroendocrine tumor","type":"exact"},{"name":"gastric enterochromaffin-like cell neuroendocrine tumour","type":"exact"},{"name":"grade 1 neuroendocrine neoplasm of stomach","type":"exact"},{"name":"stomach NET G1","type":"exact"},{"name":"stomach carcinoid tumor","type":"exact"},{"name":"stomach carcinoid tumour","type":"exact"},{"name":"stomach neuroendocrine neoplasm G1","type":"exact"},{"name":"stomach neuroendocrine tumor, well differentiated, low grade","type":"exact"}],"termid":"MONDO:0006227","xrefs":{"Monarch":{"xref_id":"0006227"}}}


id: PBO:0082730
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the RNA polymerase II mediator complex; mediator is required for transcriptional activation and also has a role in basal transcription","termid":"PBO:0082730"}


id: GO:0032767
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a protein or protein complex, in the presence of copper.","definition_xrefs":["PMID:16884690","GOC:ecd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"copper-dependent protein binding","termid":"GO:0032767"}


id: GO:0002738
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of plasmacytoid dendritic cell cytokine production.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of dendritic cell cytokine production","termid":"GO:0002732"},{"relation_name":"is_a","term_name":"regulation of plasmacytoid dendritic cell cytokine production","termid":"GO:0002736"},{"relation_name":"positively_regulates","term_name":"plasmacytoid dendritic cell cytokine production","termid":"GO:0002373"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of plasmacytoid dendritic cell cytokine production","synonyms":[{"name":"activation of plasmacytoid dendritic cell cytokine production","type":"narrow"},{"name":"stimulation of plasmacytoid dendritic cell cytokine production","type":"narrow"},{"name":"up regulation of plasmacytoid dendritic cell cytokine production","type":"exact"},{"name":"up-regulation of plasmacytoid dendritic cell cytokine production","type":"exact"},{"name":"upregulation of plasmacytoid dendritic cell cytokine production","type":"exact"}],"termid":"GO:0002738"}


id: FYPO:0006858
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which methylation of lysine at position 37 of histone H3 does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone H3-K37 methylation","termid":"FYPO:0006855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0002274"],"is_obsolete":false,"name":"abolished histone H3-K37 methylation","synonyms":[{"name":"abolished histone H3 K37 methylation","type":"exact"},{"name":"abolished histone H3K37me","type":"exact"},{"name":"abolished histone lysine H3 K37 methylation","type":"exact"},{"name":"histone H3-K37 methylation abolished","type":"exact"},{"name":"histone H3-K37 methylation absent","type":"exact"}],"termid":"FYPO:0006858"}


id: GO:0075271
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a fruiting body called zygosporangium is formed. A zygosporangium is a thick-walled structure in which spores are produced, and is characteristic of the Zygomycetes.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spore-bearing structure development","termid":"GO:0075259"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"zygosporangium development","termid":"GO:0075271"}


id: MONDO:0013372
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any long QT syndrome in which the cause of the disease is a mutation in the KCNE1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"long QT syndrome","termid":"MONDO:0002442"},{"relation_name":"is_a","term_name":"familial long QT syndrome","termid":"MONDO:0019171"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"long QT syndrome 5","secondary_identifiers":["HGNC:6240","GARD:10433","DOID:0110647","NCIT:C172094","MEDGEN:358092","UMLS:C1867904","MESH:C566766","OMIM:613695"],"synonyms":[{"name":"KCNE1 long QT syndrome","type":"exact"},{"name":"LQT5","type":"exact"},{"name":"long QT syndrome 2/5, digenic","type":"related"},{"name":"long QT syndrome 5","type":"exact"},{"name":"long QT syndrome 5, acquired, susceptibility to","type":"related"},{"name":"long QT syndrome caused by mutation in KCNE1","type":"exact"},{"name":"long QT syndrome type 5","type":"exact"}],"termid":"MONDO:0013372","xrefs":{"Monarch":{"xref_id":"0013372"}}}


id: MONDO:0015941
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Epiphyseal dysplasia-hearing loss-dysmorphism syndrome is a rare multiple congenital anomalies/dysmorphic syndrome characterized by developmental delay, intellectual disability, short stature, sensorineural hearing impairment, facial dysmorphism (incl. epicanthus, broad, depressed nasal bridge, broad, fleshy nasal tip, mildly anteverted nares, deep nasolabial folds, broad mouth with thin upper lip) and skeletal anomalies (incl. abnormally placed thumbs, brachydactyly, scoliosis, dysplastic carpal bones). Patients also present severe behavior disturbances (aggression, hyperactivity), as well as hypopigmented skin lesions and hypoplastic digital patterns. There have been no further descriptions in the literature since 1992.","definition_xrefs":["Orphanet:1825"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epiphyseal dysplasia-hearing loss-dysmorphism syndrome","secondary_identifiers":["UMLS:C4707857","SCTID:766870005","MEDGEN:1643947","GARD:2178"],"synonyms":[{"name":"Finucane Kurtz Scott syndrome","type":"related"},{"name":"Finucane-Kurtz-Scott syndrome","type":"exact"},{"name":"epiphyseal dysplasia hearing loss dysmorphism","type":"related"}],"termid":"MONDO:0015941","xrefs":{"Monarch":{"xref_id":"0015941"}}}


id: PBO:0055796
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lipoprotein(a)","termid":"PBO:0055796"}


id: PBO:0076863
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed 13A","termid":"PBO:0076863"}


id: PBO:0034446
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_okadaic_acid","termid":"PBO:0034446"}


id: MONDO:0850450
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An acute biphenotypic leukemia that is characterized by blasts which carry a translocation between the MLL (KMT2A) gene at 11q23.3 and another gene partner.","definition_xrefs":["DOID:0081037"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acute biphenotypic leukemia","termid":"MONDO:0020322"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0004992","MONDO:0005570"],"is_obsolete":false,"name":"mixed phenotype acute leukemia with MLL rearranged","termid":"MONDO:0850450","xrefs":{"Monarch":{"xref_id":"0850450"}}}


id: PBO:0056166
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitotic arrest deficient 2 like 1 pseudogene 1","termid":"PBO:0056166"}


id: GO:0005093
data:
  {"annotated_genes":["SJAG_02422"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[76506],"is_not":false,"summary":null,"term":"GO:0005093"}]},"cv_name":"molecular_function","definition":"Prevents the dissociation of GDP from the small GTPase Rab, thereby preventing GTP from binding.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"GDP-dissociation inhibitor activity","termid":"GO:0005092"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02422":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"regulates","termid":"GO:0003924"},{"rel_name":"regulates","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016787","GO:0030234","GO:0003824","GO:0003674","GO:0098772","GO:0003924"],"is_obsolete":false,"name":"Rab GDP-dissociation inhibitor activity","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0005093","terms_by_termid":{"GO:0005093":null}}


id: GO:0060186
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The growth of the outer ear.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental growth involved in morphogenesis","termid":"GO:0060560"},{"relation_name":"part_of","term_name":"outer ear morphogenesis","termid":"GO:0042473"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"outer ear emergence","synonyms":[{"name":"ear elevation","type":"related"},{"name":"ear extroversion","type":"related"},{"name":"outer ear growth","type":"related"}],"termid":"GO:0060186"}


id: FYPO:0007920
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which alternative polyadenylation of ncRNA is decreased. ncRNA alternative polyadenylation generates RNA molecules with variable 3'-end lengths from a given RNA by differential use of cleavage and polyadenylation signals. Includes differences in the relative usage levels of alternative polyadenylation sites.","direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal RNA alternative polyadenylation","termid":"FYPO:0007919"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0000294","FYPO:0006551"],"is_obsolete":false,"name":"decreased ncRNA alternative polyadenylation","termid":"FYPO:0007920"}


id: MOD:01413
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-leucine residue to a trihydroxylated leucine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trihydroxylated residue","termid":"MOD:01409"},{"relation_name":"is_a","term_name":"hydroxylated leucine","termid":"MOD:01410"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trihydroxylated leucine","synonyms":[{"name":"Hy3Leu","type":"exact"}],"termid":"MOD:01413"}


id: FYPO:0003347
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the substrate specificity of a catalytic activity differs from wild type.","definition_xrefs":["PomBase:mah","PMID:23091597"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000661","FYPO:0000707","FYPO:0000654","FYPO:0000652"],"is_obsolete":false,"name":"altered substrate specificity","synonyms":[{"name":"abnormal catalytic activity, altered substrate specificity","type":"exact"}],"termid":"FYPO:0003347"}


id: MONDO:0007885
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A hip region disease that is characterized by uni- or bilateral avascular necrosis (AVN) of the femoral head in children. In a small percentage of cases, mutations in the COL2A1 gene were found to be responsible.","definition_xrefs":["Orphanet:2380","GARD:0006874"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete type 2 collagen-related bone disorder (obsolete MONDO:0019686)","termid":"MONDO:0019686"},{"relation_name":"is_a","term_name":"osteochondrosis","termid":"MONDO:0018381"},{"relation_name":"is_a","term_name":"osteonecrosis of genetic origin","termid":"MONDO:0018383"},{"relation_name":"is_a","term_name":"dysplasia of the proximal femoral epiphyses","termid":"MONDO:1030002"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Legg-Calve-Perthes disease","secondary_identifiers":["NORD:1353","MEDGEN:730669","MESH:D007873","OMIM:150600","SCTID:15739006","DOID:14415","NCIT:C34766","MedDRA:10034735","UMLS:C1442965","GARD:6874"],"synonyms":[{"name":"Calve - Perthes' disease","type":"exact"},{"name":"LCPD","type":"related"},{"name":"Lcp","type":"related"},{"name":"Legg Calvé Perthes Disease","type":"exact"},{"name":"Legg-CALVE-Perthes disease","type":"exact"},{"name":"Legg-Calve-Perthes disease","type":"exact"},{"name":"Legg-Calve-Perthes symptom","type":"exact"},{"name":"Legg-Calve-Perthes syndrome","type":"exact"},{"name":"Legg-Calvé-Perthes disease","type":"exact"},{"name":"Legg-Perthes disease","type":"exact"},{"name":"Osteochondrosis of the capital femoral epiphysis","type":"exact"},{"name":"Perthe's disease","type":"exact"},{"name":"Perthes disease","type":"exact"},{"name":"Pseudocoxalgia","type":"exact"},{"name":"aseptic necrosis of the capital femoral epiphysis","type":"exact"},{"name":"coxa plana","type":"exact"},{"name":"juvenile osteochond-hip/pelvis","type":"exact"},{"name":"juvenile osteochondrosis of hip and pelvis","type":"exact"},{"name":"juvenile osteochondrosis of hip and/or pelvis","type":"exact"},{"name":"osteochondritis deformans","type":"related"},{"name":"osteochondritis of the capital femoral epiphysis","type":"exact"},{"name":"osteochondrosis of Legg-Calve-Perthes","type":"exact"},{"name":"pseudocoxalgia","type":"exact"}],"termid":"MONDO:0007885","xrefs":{"Monarch":{"xref_id":"0007885"}}}


id: PBO:0079142
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetraspanin 5","termid":"PBO:0079142"}


id: PBO:0001583
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4.1.2.5","termid":"PBO:0001583"}


id: PBO:0074194
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 39 member 4","termid":"PBO:0074194"}


id: PBO:0116618
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lncRNA Wnt/beta-catenin associated regulator","termid":"PBO:0116618"}


id: GO:1902222
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of erythrose 4-phosphate/phosphoenolpyruvate family amino acid.","definition_xrefs":["GOC:pr","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-amino acid catabolic process","termid":"GO:0170035"},{"relation_name":"is_a","term_name":"proteinogenic amino acid catabolic process","termid":"GO:0170040"},{"relation_name":"is_a","term_name":"erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process","termid":"GO:1902221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process","synonyms":[{"name":"erythrose 4-phosphate/phosphoenolpyruvate family amino acid breakdown","type":"exact"},{"name":"erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolism","type":"exact"},{"name":"erythrose 4-phosphate/phosphoenolpyruvate family amino acid degradation","type":"exact"}],"termid":"GO:1902222"}


id: GO:0019480
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of L-alanine to pyruvate, with D-alanine as an intermediate.","definition_xrefs":["MetaCyc:ALADEG-PWY"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-alanine catabolic process","termid":"GO:0042853"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006520","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"L-alanine oxidation to pyruvate via D-alanine","termid":"GO:0019480"}


id: PBO:0049370
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"general transcription factor IIIA","termid":"PBO:0049370"}


id: PATO:0002197
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality that describes the power of an atom to attract electrons to itself .","definition_xrefs":["PATOC:JH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular quality","termid":"PATO:0002182"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"electronegativity","termid":"PATO:0002197"}


id: GO:0004857
data:
  {"annotated_genes":["SJAG_02786","SJAG_00452","SJAG_03974","SJAG_02594","SJAG_03931","SJAG_04203","SJAG_01348","SJAG_01072","SJAG_04546","SJAG_04999","SJAG_01245","SJAG_04627","SJAG_00460","SJAG_03629","SJAG_01150","SJAG_04505","SJAG_01821","SJAG_02874","SJAG_03272","SJAG_03309","SJAG_01118","SJAG_02485","SJAG_04633","SJAG_01210","SJAG_04398","SJAG_02194","SJAG_04699","SJAG_01515","SJAG_02380"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[109565,117319],"is_not":false,"summary":null,"term":"GO:0004857"},{"annotations":[71316],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004862"},{"annotations":[109221],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004861"},{"annotations":[117158,66537,103600],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004866"},{"annotations":[89158],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0060698"},{"annotations":[116636],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005095"},{"annotations":[92524,97550],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990624"},{"annotations":[66029],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008073"},{"annotations":[100293],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030414"},{"annotations":[107339,76245],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004860"},{"annotations":[70558,89702],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004864"},{"annotations":[118372,108731],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030291"},{"annotations":[74967,76320,88171],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004865"},{"annotations":[95814,97404],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990846"},{"annotations":[93512],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004867"},{"annotations":[77221],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010521"},{"annotations":[115890,99016],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990948"},{"annotations":[114962],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0055105"}]},"cv_name":"molecular_function","definition":"Binds to and stops, prevents or reduces the activity of an enzyme.","definition_xrefs":["GOC:ebc","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme regulator activity","termid":"GO:0030234"},{"relation_name":"is_a","term_name":"molecular function inhibitor activity","termid":"GO:0140678"},{"relation_name":"negatively_regulates","term_name":"catalytic activity","termid":"GO:0003824"}],"gene_count":29,"genes_by_uniquename":{"SJAG_00452":null,"SJAG_00460":null,"SJAG_01072":null,"SJAG_01118":null,"SJAG_01150":null,"SJAG_01210":null,"SJAG_01245":null,"SJAG_01348":null,"SJAG_01515":null,"SJAG_01821":null,"SJAG_02194":null,"SJAG_02380":null,"SJAG_02485":null,"SJAG_02594":null,"SJAG_02786":null,"SJAG_02874":null,"SJAG_03272":null,"SJAG_03309":null,"SJAG_03629":null,"SJAG_03931":null,"SJAG_03974":null,"SJAG_04203":null,"SJAG_04398":null,"SJAG_04505":null,"SJAG_04546":null,"SJAG_04627":null,"SJAG_04633":null,"SJAG_04699":null,"SJAG_04999":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"regulates","termid":"GO:0003824"},{"rel_name":"negatively_regulates","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0140678"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0030234","GO:0098772","GO:0140678","GO:0003674"],"is_obsolete":false,"name":"enzyme inhibitor activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0048551"],"synonyms":[{"name":"metalloenzyme inhibitor activity","type":"narrow"}],"termid":"GO:0004857","terms_by_termid":{"GO:0004857":null,"GO:0004860":null,"GO:0004861":null,"GO:0004862":null,"GO:0004864":null,"GO:0004865":null,"GO:0004866":null,"GO:0004867":null,"GO:0005095":null,"GO:0008073":null,"GO:0010521":null,"GO:0030291":null,"GO:0030414":null,"GO:0055105":null,"GO:0060698":null,"GO:1990624":null,"GO:1990846":null,"GO:1990948":null}}


id: GO:0160037
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency, or extent of postsynaptic density assembly.","definition_xrefs":["PMID:17626212"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of postsynaptic density assembly","termid":"GO:0099151"},{"relation_name":"is_a","term_name":"negative regulation of organelle assembly","termid":"GO:1902116"},{"relation_name":"is_a","term_name":"negative regulation of postsynaptic density organization","termid":"GO:1905875"},{"relation_name":"negatively_regulates","term_name":"postsynaptic density assembly","termid":"GO:0097107"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"negative regulation of postsynaptic density assembly","termid":"GO:0160037"}


id: MONDO:0005412
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An ulcer in the duodenal wall.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"duodenal disorder","termid":"MONDO:0002866"},{"relation_name":"is_a","term_name":"peptic ulcer disease","termid":"MONDO:0004247"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"duodenal ulcer","secondary_identifiers":["DOID:1724","EFO:0004607","MEDGEN:41670","ICD9:532","NCIT:C26755","UMLS:C0013295","SCTID:39755000","HP:0002588","MESH:D004381","ICD10CM:K26","icd11.foundation:553678663"],"synonyms":[{"name":"curling Ulcer","type":"exact"},{"name":"curling's ulcers","type":"exact"},{"name":"duodenal ulcer (disease)","type":"exact"},{"name":"stress Ulcer","type":"narrow"}],"termid":"MONDO:0005412","xrefs":{"Monarch":{"xref_id":"0005412"}}}


id: MONDO:0001942
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An anxiety disorder characterized by excessive and difficult-to-control worry about a number of life situations. The worry is accompanied by restlessness, fatigue, inability to concentrate, irritability, muscle tension, and/or sleep disturbance and lasts for at least 6 months.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anxiety disorder","termid":"MONDO:0005618"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"generalized anxiety disorder","secondary_identifiers":["EFO:1001892","ICD10CM:F41.1","MEDGEN:452363","SCTID:21897009","ICD9:300.02","DOID:14320","UMLS:C0270549","NCIT:C92622"],"synonyms":[{"name":"GAD","type":"exact"}],"termid":"MONDO:0001942","xrefs":{"Monarch":{"xref_id":"0001942"}}}


id: SO:0000478
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Genomic DNA of immunoglobulin/T-cell receptor gene including C-region (and introns if present) with 5' UTR (SO:0000204) and 3' UTR (SO:0000205).","direct_ancestors":[{"relation_name":"is_a","term_name":"vertebrate_immunoglobulin_T_cell_receptor_segment","termid":"SO:0000460"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C_gene_segment","synonyms":[{"name":"C gene","type":"exact"},{"name":"C_GENE","type":"exact"},{"name":"INSDC_feature:C_region","type":"exact"},{"name":"constant gene","type":"exact"}],"termid":"SO:0000478"}


id: GO:2000108
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of leukocyte apoptotic process.","definition_xrefs":["GOC:mtg_apoptosis","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of apoptotic process","termid":"GO:0043065"},{"relation_name":"is_a","term_name":"regulation of leukocyte apoptotic process","termid":"GO:2000106"},{"relation_name":"positively_regulates","term_name":"leukocyte apoptotic process","termid":"GO:0071887"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of leukocyte apoptotic process","synonyms":[{"name":"positive regulation of leukocyte apoptosis","type":"narrow"}],"termid":"GO:2000108"}


id: MONDO:1010491
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Ventricular septal defect that occurs in horse.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ventricular septal defect, non-human animal","termid":"MONDO:1010022"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ventricular septal defect, horse","secondary_identifiers":["OMIA:001041-9796"],"termid":"MONDO:1010491","xrefs":{"Monarch":{"xref_id":"1010491"}}}


id: PBO:0077806
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TOX high mobility group box family member 4","termid":"PBO:0077806"}


id: PBO:0030886
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-DNA_metabolism_phenotype_during_vegetative_growth","termid":"PBO:0030886"}


id: PBO:0059113
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"motile sperm domain containing 2","termid":"PBO:0059113"}


id: MONDO:0002582
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A leukemia that is in between acute and chronic leukemia and is characterized by a moderate duration or severity.","definition_xrefs":["DOID:3264"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acute leukemia","termid":"MONDO:0010643"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"subacute leukemia","secondary_identifiers":["MEDGEN:509481","ICD9:208.2","SCTID:302855005","UMLS:C0153924","ICD9:208.20"],"termid":"MONDO:0002582","xrefs":{"Monarch":{"xref_id":"0002582"}}}


id: MONDO:0016923
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndrome caused by partial chromosomal duplication","termid":"MONDO:0000762"},{"relation_name":"is_a","term_name":"chromosome 3 disorder","termid":"MONDO:0700010"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"partial duplication of chromosome 3","secondary_identifiers":["UMLS:C4518491","GARD:20844","MEDGEN:1372547","SCTID:726341009","Orphanet:262201"],"synonyms":[{"name":"partial duplication of chromosome type 3","type":"exact"},{"name":"partial trisomy of chromosome 3","type":"exact"}],"termid":"MONDO:0016923","xrefs":{"Monarch":{"xref_id":"0016923"}}}


id: GO:1990504
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The secretion of molecules (e.g. neuropeptides, insulin-related peptides or neuromodulators such as serotonin and dopamine) contained within a membrane-bounced dense core granule by fusion of the granule with the plasma membrane of a cell in response to increased cytosolic calcium levels.","definition_xrefs":["PMID:24653208","GOC:kmv","PMID:17553987"],"direct_ancestors":[{"relation_name":"is_a","term_name":"calcium-ion regulated exocytosis","termid":"GO:0017156"},{"relation_name":"is_a","term_name":"dense core granule localization","termid":"GO:0032253"},{"relation_name":"is_a","term_name":"establishment of vesicle localization","termid":"GO:0051650"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0016192","GO:0006810"],"is_obsolete":false,"name":"dense core granule exocytosis","synonyms":[{"name":"dense core vesicle exocytosis","type":"exact"}],"termid":"GO:1990504"}


id: PBO:0041523
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 16 open reading frame 78","termid":"PBO:0041523"}


id: PBO:0004639
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"palmitoyltransferase Swf1 (predicted)","termid":"PBO:0004639"}


id: PR:P38938
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cek1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P38938"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein kinase cek1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1450.11c","synonyms":[{"name":"Spom972h-cek1","type":"exact"}],"termid":"PR:P38938"}


id: GO:0035530
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of chemokine (C-C motif) ligand 6 (CCL6) due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:add","PMID:19812544"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chemokine production","termid":"GO:0032602"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"chemokine (C-C motif) ligand 6 production","synonyms":[{"name":"CCL6 production","type":"exact"}],"termid":"GO:0035530"}


id: PBO:0084290
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Integral subunit of SAGA histone acetyltransferase complex; regulates transcription of a subset of SAGA-regulated genes, required for the Ubp8p association with SAGA and for H2B deubiquitylation","termid":"PBO:0084290"}


id: MONDO:0008173
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any pachyonychia congenita in which the cause of the disease is a mutation in the KRT16 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pachyonychia congenita","termid":"MONDO:0016471"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"pachyonychia congenita 1","secondary_identifiers":["GARD:15102","UMLS:C1706595","SCTID:39427000","OMIM:167200","MEDGEN:353335"],"synonyms":[{"name":"Jadassohn-Lewandowsky syndrome","type":"related"},{"name":"Jadassohn-Lewandowsky syndrome, formerly","type":"related"},{"name":"KRT16 pachyonychia congenita","type":"exact"},{"name":"PC1","type":"related"},{"name":"pachyonychia congenita 1","type":"exact"},{"name":"pachyonychia congenita caused by mutation in KRT16","type":"exact"},{"name":"pachyonychia congenita type 1","type":"exact"},{"name":"pachyonychia congenita, Jadassohn-Lewandowsky type","type":"related"},{"name":"pachyonychia congenita, Jadassohn-Lewandowsky type, formerly","type":"related"}],"termid":"MONDO:0008173","xrefs":{"Monarch":{"xref_id":"0008173"}}}


id: PBO:0071774
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein lateral stalk subunit P0 pseudogene 2","termid":"PBO:0071774"}


id: PR:O14252
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC6G10.06 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14252"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oxidoreductase C6G10.06 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6G10.06","synonyms":[{"name":"Spom972h-SPAC6G10.06","type":"exact"}],"termid":"PR:O14252"}


id: SO:0000368
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The junction in a genome where a transposable_element has inserted.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"insertion_site","termid":"SO:0000366"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transposable_element_insertion_site","synonyms":[{"name":"transposable element insertion site","type":"exact"}],"termid":"SO:0000368"}


id: PBO:0089789
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase Ppk16","termid":"PBO:0089789"}


id: FYPO:0000954
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing nickel cations.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0002058","FYPO:0002060","FYPO:0000003","FYPO:0000139","FYPO:0002057"],"is_obsolete":false,"name":"normal growth on nickel cation","synonyms":[{"name":"normal cell population growth in presence of nickel cations","type":"exact"},{"name":"normal cell population growth on nickel","type":"exact"},{"name":"normal cell population growth on nickel cation","type":"exact"},{"name":"normal cellular response to nickel cation","type":"related"},{"name":"normal vegetative cell population growth on nickel cation","type":"exact"}],"termid":"FYPO:0000954"}


id: GO:0060029
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The morphogenetic process in which an epithelium narrows along one axis and lengthens in a perpendicular axis contribution to the shaping of an organ.","definition_xrefs":["GOC:dph","PMID:12062082"],"direct_ancestors":[{"relation_name":"is_a","term_name":"convergent extension","termid":"GO:0060026"},{"relation_name":"part_of","term_name":"animal organ development","termid":"GO:0048513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"convergent extension involved in organogenesis","termid":"GO:0060029"}


id: PATO:0001969
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A branched quality inhering in a bearer by virtue of the bearer's having secondary branches terminating at the margin.","definition_xrefs":["Hickey:1988"],"direct_ancestors":[{"relation_name":"is_a","term_name":"branched","termid":"PATO:0000402"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"craspedodromous","termid":"PATO:0001969"}


id: GO:0044014
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + histone H2B L-lysine (position 5) = CoA + histone H2B N6-acetyl-L-lysine (position 5).","definition_xrefs":["PMID:18552846"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H2B acetyltransferase activity","termid":"GO:0044013"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0034212"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016746","GO:0003824","GO:0034212","GO:0003674","GO:0140096","GO:0016740"],"is_obsolete":false,"name":"histone H2BK5 acetyltransferase activity","synonyms":[{"name":"histone acetylase activity (H2B-K5 specific)","type":"exact"},{"name":"histone acetyltransferase activity (H2B-K5 specific)","type":"exact"},{"name":"histone lysine N-acetyltransferase activity (H2B-K5 specific)","type":"exact"}],"termid":"GO:0044014"}


id: CHEBI:63041
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","definition":"A manganese coordination entity in which manganese(II) is coordinated to two chloride ions.","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"manganese(II) chloride","termid":"CHEBI:63041"}


id: MONDO:0009734
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any hyperinsulinemic hypoglycemia in which the cause of the disease is a mutation in the ABCC8 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hyperinsulinemic hypoglycemia","termid":"MONDO:0005803"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0037792","MONDO:0005066"],"is_obsolete":false,"name":"hyperinsulinemic hypoglycemia, familial, 1","secondary_identifiers":["OMIM:256450","MEDGEN:419505","DOID:0070219","UMLS:C2931832","SCTID:360339005"],"synonyms":[{"name":"ABCC8 hyperinsulinemic hypoglycemia (disease)","type":"exact"},{"name":"HHF1","type":"related"},{"name":"Nesidioblastosis of pancreas","type":"related"},{"name":"hyperinsulinemic hypoglycemia (disease) caused by mutation in ABCC8","type":"exact"},{"name":"hyperinsulinemic hypoglycemia due to SUR1 deficiency","type":"exact"},{"name":"hyperinsulinemic hypoglycemia due to focal adenomatous hyperplasia","type":"related"},{"name":"hyperinsulinemic hypoglycemia, familial, 1","type":"exact"},{"name":"hyperinsulinemic hypoglycemia, familial, type 1","type":"exact"},{"name":"hyperinsulinism, congenital","type":"related"},{"name":"hyperinsulinism, familial, with pancreatic Nesidioblastosis","type":"related"},{"name":"hypoglycemia, hyperinsulinemic, of infancy","type":"related"},{"name":"persistent hyperinsulinemic hypoglycemia of infancy","type":"related"}],"termid":"MONDO:0009734","xrefs":{"Monarch":{"xref_id":"0009734"}}}


id: PBO:0048955
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GOT2 pseudogene 6","termid":"PBO:0048955"}


id: MONDO:0013667
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete myelodysplastic syndrome (obsolete MONDO:0013667)","termid":"MONDO:0013667","xrefs":{"Monarch":{"xref_id":"0013667"}}}


id: PBO:0089793
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GATOR1-SEACIT GTPase complex subunit Npr2","termid":"PBO:0089793"}


id: MONDO:0012874
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"disseminated superficial actinic porokeratosis","termid":"MONDO:0019212"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"porokeratosis 6, disseminated superficial actinic type","secondary_identifiers":["MEDGEN:394063","OMIM:612353","UMLS:C2676508","MESH:C567339","GARD:15552"],"synonyms":[{"name":"POROK6","type":"exact"},{"name":"porokeratosis 6, disseminated superficial","type":"related"},{"name":"porokeratosis 6, disseminated superficial actinic type","type":"exact"},{"name":"porokeratosis 6, multiple types","type":"related"},{"name":"porokeratosis, disseminated superficial actinic, 4","type":"related"}],"termid":"MONDO:0012874","xrefs":{"Monarch":{"xref_id":"0012874"}}}


id: GO:0060429
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of an epithelium over time, from its formation to the mature structure. An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure.","definition_xrefs":["GOC:dph","GOC:mtg_lung"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tissue development","termid":"GO:0009888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epithelium development","termid":"GO:0060429"}


id: PBO:0085967
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; overproduction suppresses lethality due to expression of the dominant PET9 allele AAC2-A128P; may have a role in telomere maintenance; target of UME6 regulation","termid":"PBO:0085967"}


