# terms

id: PR:O42646
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ubc6 gene.","definition_xrefs":["UniProtKB:O42646","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-conjugating enzyme E2 6 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC10F6.05c","synonyms":[{"name":"E2 ubiquitin-conjugating enzyme 6 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-ubc6","type":"exact"},{"name":"ubiquitin carrier protein 6 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ubiquitin-protein ligase 6 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O42646"}


id: PBO:0034788
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitotic centromere-SPB clustering protein Csi1","termid":"PBO:0034788"}


id: MONDO:1011662
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"digestive system disorder, non-human animal","termid":"MONDO:1011311"},{"relation_name":"is_a","term_name":"ulcer disease, non-human animal","termid":"MONDO:1011363"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stomach ulcer, non-human animal","secondary_identifiers":["OMIA:001027"],"termid":"MONDO:1011662","xrefs":{"Monarch":{"xref_id":"1011662"}}}


id: PBO:0016045
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"queuine tRNA-ribosyltransferase Qtrt1","termid":"PBO:0016045"}


id: GO:0001742
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires the specialized features of an oenocyte. Oenocytes are large secretory cells found in clusters underlying the epidermis of larval abdominal segments.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation","termid":"GO:0030154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"oenocyte differentiation","synonyms":[{"name":"oenocyte cell differentiation","type":"exact"}],"termid":"GO:0001742"}


id: MONDO:0006273
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A low grade fibromyxoid sarcoma characterized by the presence of prominent collagen rosettes.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"low grade fibromyxoid sarcoma","termid":"MONDO:0006272"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"low grade fibromyxoid sarcoma with giant collagen rosettes","secondary_identifiers":["NCIT:C45203","EFO:1000329","MEDGEN:310942","UMLS:C1708749"],"synonyms":[{"name":"hyalinizing spindle cell tumor with giant Rosettes","type":"exact"},{"name":"hyalinizing spindle cell tumour with giant Rosettes","type":"exact"}],"termid":"MONDO:0006273","xrefs":{"Monarch":{"xref_id":"0006273"}}}


id: GO:0055070
data:
  {"annotated_genes":["SJAG_02399","SJAG_04403","SJAG_00668","SJAG_01694","SJAG_00802"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[93462,100482,108170,75243,78391],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006878"}]},"cv_name":"biological_process","definition":"Any process involved in the maintenance of an internal steady state of copper ions within an organism or cell.","definition_xrefs":["GOC:jid","GOC:mah","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoatomic cation homeostasis","termid":"GO:0055080"},{"relation_name":"is_a","term_name":"inorganic ion homeostasis","termid":"GO:0098771"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00668":null,"SJAG_00802":null,"SJAG_01694":null,"SJAG_02399":null,"SJAG_04403":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0098771"}],"interesting_parent_ids":["GO:0008150","GO:0098771"],"is_obsolete":false,"name":"copper ion homeostasis","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"copper homeostasis","type":"broad"}],"termid":"GO:0055070","terms_by_termid":{"GO:0006878":null}}


id: MONDO:0010634
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"jaundice, familial obstructive, of infancy","secondary_identifiers":["UMLS:C1839927","MEDGEN:326992","OMIM:308600","MESH:C564118"],"synonyms":[{"name":"jaundice, familial obstructive, of infancy","type":"exact"}],"termid":"MONDO:0010634","xrefs":{"Monarch":{"xref_id":"0010634"}}}


id: PR:P19117
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An inorganic pyrophosphatase 2, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00883","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inorganic pyrophosphatase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23C11.05","secondary_identifiers":["UniProtKB:P19117"],"synonyms":[{"name":"PPase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-PPA2","type":"exact"},{"name":"pyrophosphate phospho-hydrolase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P19117"}


id: GO:0015712
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of hexose phosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organophosphate ester transport","termid":"GO:0015748"},{"relation_name":"is_a","term_name":"carbohydrate derivative transport","termid":"GO:1901264"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"hexose phosphate transport","termid":"GO:0015712"}


id: PBO:0056213
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAGE family member B10","termid":"PBO:0056213"}


id: PBO:0041924
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CBS mRNA stabilizing lncRNA","termid":"PBO:0041924"}


id: PBO:0062797
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ORMDL sphingolipid biosynthesis regulator 2","termid":"PBO:0062797"}


id: GO:0052926
data:
  {"annotated_genes":["SJAG_00334"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[62764],"is_not":false,"summary":null,"term":"GO:0052926"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: alpha-D-man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-(alpha-D-Man-(1->3)-alpha-D-Man-(1->6))-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc-diphosphodolichol + dolichyl D-mannosyl phosphate = H+ + alpha-D-Man-(1->2)-alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-(alpha-D-Man-(1->2)-alpha-D-Man-(1->3)-alpha-D-Man-(1->6))-beta-D-Man-(1->4)-beta-D-GlcNAc-(1->4)-D-GlcNAc-diphosphodolichol + dolichyl phosphate.","definition_xrefs":["EC:2.4.1.259","RHEA:29531"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-1,2-mannosyltransferase activity","termid":"GO:0000026"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00334":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016757","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase activity","references_by_uniquename":{"GO_REF:0000003":null},"secondary_identifiers":["KEGG_REACTION:R06259","MetaCyc:RXN-5467"],"synonyms":[{"name":"dolichylphosphomannose-dependent ALG9 mannosyltransferase activity","type":"related"}],"termid":"GO:0052926","terms_by_termid":{"GO:0052926":null}}


id: GO:1901842
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of high voltage-gated calcium channel activity.","definition_xrefs":["PMID:12754254","GOC:BHF","GOC:rl","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of voltage-gated calcium channel activity","termid":"GO:1901386"},{"relation_name":"is_a","term_name":"regulation of high voltage-gated calcium channel activity","termid":"GO:1901841"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0006810"],"is_obsolete":false,"name":"negative regulation of high voltage-gated calcium channel activity","synonyms":[{"name":"down regulation of high voltage gated calcium channel activity","type":"exact"},{"name":"down regulation of high voltage-dependent calcium channel activity","type":"exact"},{"name":"down regulation of high voltage-gated calcium channel activity","type":"exact"},{"name":"down-regulation of high voltage gated calcium channel activity","type":"exact"},{"name":"down-regulation of high voltage-dependent calcium channel activity","type":"exact"},{"name":"down-regulation of high voltage-gated calcium channel activity","type":"exact"},{"name":"downregulation of high voltage gated calcium channel activity","type":"exact"},{"name":"downregulation of high voltage-dependent calcium channel activity","type":"exact"},{"name":"downregulation of high voltage-gated calcium channel activity","type":"exact"},{"name":"inhibition of high voltage gated calcium channel activity","type":"exact"},{"name":"inhibition of high voltage-dependent calcium channel activity","type":"exact"},{"name":"inhibition of high voltage-gated calcium channel activity","type":"narrow"},{"name":"negative regulation of high voltage gated calcium channel activity","type":"exact"},{"name":"negative regulation of high voltage-dependent calcium channel activity","type":"exact"}],"termid":"GO:1901842"}


id: PATO:0000690
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality of a single process inhering in a bearer by virtue of the bearer's being marked by breaks or interruptions.","definition_xrefs":["thefreedictionary.com:thefreedictionary.com"],"direct_ancestors":[{"relation_name":"is_a","term_name":"occurrence","termid":"PATO:0000057"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"discontinuous","secondary_identifiers":["PATO:0000426"],"synonyms":[{"name":"intermittent","type":"related"},{"name":"interrupted","type":"exact"}],"termid":"PATO:0000690"}


id: PBO:0018073
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c heme lyase Cyc3 (predicted)","termid":"PBO:0018073"}


id: PBO:0108707
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RabGAP Gyp3","termid":"PBO:0108707"}


id: GO:0050070
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1-acyl-sn-glycero-3-phosphocholine = 2-acyl-sn-glycero-3-phosphocholine.","definition_xrefs":["EC:5.4.1.1","RHEA:24356"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular acyltransferase activity","termid":"GO:0016867"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0016853","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"lysolecithin acylmutase activity","secondary_identifiers":["KEGG_REACTION:R03334","MetaCyc:LYSOLECITHIN-ACYLMUTASE-RXN"],"synonyms":[{"name":"lysolecithin 2,3-acylmutase activity","type":"related"},{"name":"lysolecithin migratase activity","type":"related"}],"termid":"GO:0050070"}


id: GO:0043412
data:
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id: FYPO:0001101
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell during a cellular response to hydrogen peroxide is lower than normal. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein level during vegetative growth","termid":"FYPO:0001324"},{"relation_name":"is_a","term_name":"altered protein level during cellular response to hydrogen peroxide","termid":"FYPO:0001548"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0006551","FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased protein level during cellular response to hydrogen peroxide","synonyms":[{"name":"decreased protein accumulation during cellular response to hydrogen peroxide","type":"related"},{"name":"decreased protein level during cellular response to H2O2","type":"exact"},{"name":"decreased protein level during cellular response to hydrogen peroxide during mitotic cell cycle","type":"related"},{"name":"decreased protein level during cellular response to hydrogen peroxide during vegetative growth","type":"exact"},{"name":"reduced protein level during cellular response to hydrogen peroxide","type":"exact"}],"termid":"FYPO:0001101"}


id: GO:1905618
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of miRNA-mediated gene silencing by inhibition of translation.","definition_xrefs":["GOC:bc","GOC:TermGenie","GOC:PARL","PMID:23409027","GO_REF:0000058"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of miRNA-mediated gene silencing by inhibition of translation (obsolete GO:1905618)","synonyms":[{"name":"activation of down regulation of translation involved in gene silencing by miRNA","type":"narrow"},{"name":"activation of down-regulation of translation involved in gene silencing by miRNA","type":"narrow"},{"name":"activation of downregulation of translation involved in gene silencing by miRNA","type":"narrow"},{"name":"activation of gene silencing by miRNA, negative regulation of translation","type":"narrow"},{"name":"activation of inhibition of translation involved in gene silencing by miRNA","type":"narrow"},{"name":"activation of miRNA mediated inhibition of translation","type":"narrow"},{"name":"activation of miRNA-mediated gene silencing, negative regulation of translation","type":"related"},{"name":"activation of negative regulation of translation involved in gene silencing by microRNA","type":"narrow"},{"name":"positive regulation of down regulation of translation involved in gene silencing by miRNA","type":"exact"},{"name":"positive regulation of down-regulation of translation involved in gene silencing by miRNA","type":"exact"},{"name":"positive regulation of downregulation of translation involved in gene silencing by miRNA","type":"exact"},{"name":"positive regulation of gene silencing by miRNA, negative regulation of translation","type":"exact"},{"name":"positive regulation of inhibition of translation involved in gene silencing by miRNA","type":"narrow"},{"name":"positive regulation of miRNA mediated inhibition of translation","type":"exact"},{"name":"positive regulation of miRNA-mediated gene silencing, negative regulation of translation","type":"related"},{"name":"positive regulation of negative regulation of translation involved in gene silencing by microRNA","type":"exact"},{"name":"up regulation of down regulation of translation involved in gene silencing by miRNA","type":"exact"},{"name":"up regulation of down-regulation of translation involved in gene silencing by miRNA","type":"exact"},{"name":"up regulation of downregulation of translation involved in gene silencing by miRNA","type":"exact"},{"name":"up regulation of gene silencing by miRNA, negative regulation of translation","type":"exact"},{"name":"up regulation of inhibition of translation involved in gene silencing by miRNA","type":"narrow"},{"name":"up regulation of miRNA mediated inhibition of translation","type":"exact"},{"name":"up regulation of miRNA-mediated gene silencing, negative regulation of translation","type":"related"},{"name":"up regulation of negative regulation of translation involved in gene silencing by microRNA","type":"exact"},{"name":"up-regulation of down regulation of translation involved in gene silencing by miRNA","type":"exact"},{"name":"up-regulation of down-regulation of translation involved in gene silencing by miRNA","type":"exact"},{"name":"up-regulation of downregulation of translation involved in gene silencing by miRNA","type":"exact"},{"name":"up-regulation of gene silencing by miRNA, negative regulation of translation","type":"exact"},{"name":"up-regulation of inhibition of translation involved in gene silencing by miRNA","type":"narrow"},{"name":"up-regulation of miRNA mediated inhibition of translation","type":"exact"},{"name":"up-regulation of miRNA-mediated gene silencing, negative regulation of translation","type":"related"},{"name":"up-regulation of negative regulation of translation involved in gene silencing by microRNA","type":"exact"},{"name":"upregulation of down regulation of translation involved in gene silencing by miRNA","type":"exact"},{"name":"upregulation of down-regulation of translation involved in gene silencing by miRNA","type":"exact"},{"name":"upregulation of downregulation of translation involved in gene silencing by miRNA","type":"exact"},{"name":"upregulation of gene silencing by miRNA, negative regulation of translation","type":"exact"},{"name":"upregulation of inhibition of translation involved in gene silencing by miRNA","type":"narrow"},{"name":"upregulation of miRNA mediated inhibition of translation","type":"exact"},{"name":"upregulation of miRNA-mediated gene silencing, negative regulation of translation","type":"related"},{"name":"upregulation of negative regulation of translation involved in gene silencing by microRNA","type":"exact"}],"termid":"GO:1905618"}


id: PR:O14177
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A charged multivesicular body protein 2a that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR10476:SF4","PRO:DNx","OMA:SCHPO01120"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ESCRT-III complex subunit did4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4F8.01","secondary_identifiers":["UniProtKB:O14177"],"synonyms":[{"name":"Spom972h-CHMP2A","type":"exact"},{"name":"vacuolar protein-sorting-associated protein 2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14177"}


id: GO:0019402
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving galactitol, the hexitol derived by the reduction of the aldehyde group of either D- or L-galactose.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexitol metabolic process","termid":"GO:0006059"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"galactitol metabolic process","synonyms":[{"name":"galactitol metabolism","type":"exact"}],"termid":"GO:0019402"}


id: PBO:0044785
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEF6 guanine nucleotide exchange factor","termid":"PBO:0044785"}


id: PBO:0043091
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carbohydrate sulfotransferase 3","termid":"PBO:0043091"}


id: GO:0009325
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An enzyme complex that catalyzes the formation of nitrate from nitrite with the concomitant reduction of an acceptor.","definition_xrefs":["PMID:2139607"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase complex","termid":"GO:1990204"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"nitrate reductase complex","termid":"GO:0009325"}


id: MONDO:0007622
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete flood factor deficiency (obsolete MONDO:0007622)","secondary_identifiers":["OMIM:136150","MESH:C565009"],"synonyms":[{"name":"flood factor deficiency","type":"exact"}],"termid":"MONDO:0007622","xrefs":{"Monarch":{"xref_id":"0007622"}}}


id: GO:0071750
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex composed of two monomeric IgA immunoglobulin complexes linked through both direct disulfide bonds and through a disulfide binded monomer of J chain acting as a bridge. Each IgA monomer consists of two identical immunoglobulin heavy chains of an IgA isotype and two identical immunoglobulin light chains, held together by disulfide bonds. Dimeric IgA is sometimes complexed additionally with secretory component, and present in the extracellular space, in mucosal areas or other tissues, or circulating in the blood or lymph.","definition_xrefs":["GOC:add","ISBN:0781765196","PMID:16362985"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polymeric IgA immunoglobulin complex","termid":"GO:0071749"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005576"}],"interesting_parent_ids":["GO:0032991","GO:0005576","GO:0005575"],"is_obsolete":false,"name":"dimeric IgA immunoglobulin complex","synonyms":[{"name":"dimeric IgA antibody","type":"exact"},{"name":"dimeric IgA1 antibody","type":"narrow"}],"termid":"GO:0071750"}


id: PBO:0058177
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4472-1","termid":"PBO:0058177"}


id: PR:Q09933
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- dis1 gene.","definition_xrefs":["UniProtKB:Q09933","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoprotein p93 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC736.14","synonyms":[{"name":"Spom972h-dis1","type":"exact"}],"termid":"PR:Q09933"}


id: PR:P87158
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rps401 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P87158"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S4-A (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC19F8.08","synonyms":[{"name":"Spom972h-rps401","type":"exact"}],"termid":"PR:P87158"}


id: MONDO:0007479
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dwarfism, Levi type","secondary_identifiers":["MEDGEN:338837","MESH:C565081","UMLS:C1851994","OMIM:127100"],"synonyms":[{"name":"dwarfism Levi type","type":"related"},{"name":"dwarfism Levi's type","type":"related"},{"name":"dwarfism, Levi type","type":"exact"},{"name":"snub-nosed type of dwarfism","type":"related"}],"termid":"MONDO:0007479","xrefs":{"Monarch":{"xref_id":"0007479"}}}


id: GO:0099610
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The initiating cycle of an action potential. In vertebrate neurons this typically occurs at an axon hillock. Not all initiated axon potentials propagate.","definition_xrefs":["PMID:19439602","ISBN:978-0071390118"],"direct_ancestors":[{"relation_name":"is_a","term_name":"action potential","termid":"GO:0001508"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"action potential initiation","synonyms":[{"name":"action potential firing","type":"exact"},{"name":"action potential triggering","type":"exact"}],"termid":"GO:0099610"}


id: PBO:0051767
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IPO9 antisense RNA 1","termid":"PBO:0051767"}


id: MONDO:0800326
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"cone-rod dystrophy","termid":"MONDO:0015993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"cone-rod dystrophy 14","synonyms":[{"name":"CORD14","type":"exact"}],"termid":"MONDO:0800326","xrefs":{"Monarch":{"xref_id":"0800326"}}}


id: MONDO:0014215
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any primary ciliary dyskinesia in which the cause of the disease is a mutation in the CCDC65 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary ciliary dyskinesia","termid":"MONDO:0016575"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"primary ciliary dyskinesia 27","secondary_identifiers":["DOID:0110611","OMIM:615504","UMLS:C3809701","GARD:15976","MEDGEN:816031"],"synonyms":[{"name":"CCDC65 primary ciliary dyskinesia","type":"exact"},{"name":"CILD27","type":"exact"},{"name":"ciliary dyskinesia, primary, 27","type":"related"},{"name":"ciliary dyskinesia, primary, 27, without situs inversus","type":"related"},{"name":"ciliary dyskinesia, primary, type 27","type":"exact"},{"name":"primary ciliary dyskinesia 27 without situs inversus","type":"exact"},{"name":"primary ciliary dyskinesia caused by mutation in CCDC65","type":"exact"},{"name":"primary ciliary dyskinesia type 27","type":"exact"}],"termid":"MONDO:0014215","xrefs":{"Monarch":{"xref_id":"0014215"}}}


id: MONDO:0043191
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"isolated Pierre-Robin syndrome","termid":"MONDO:0009869"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"radial defect robin sequence","secondary_identifiers":["UMLS:C2931143","GARD:4624","MEDGEN:419346","MESH:C536261"],"synonyms":[{"name":"Bruce Winship syndrome","type":"related"},{"name":"Bruce winship syndrome","type":"related"},{"name":"bilateral radial defects club foot deformity micrognathia and cleft palate","type":"related"},{"name":"bilateral radial defects, club foot deformity, micrognathia and cleft palate","type":"related"}],"termid":"MONDO:0043191","xrefs":{"Monarch":{"xref_id":"0043191"}}}


id: MOD:01267
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative -","definition_xrefs":["PubMed:11746907","PubMed:15549660","Unimod:271#K"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleophilic addition to cytopiloyne+H2O","termid":"MOD:00591"},{"relation_name":"is_a","term_name":"modified L-lysine residue","termid":"MOD:00912"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleophilic addition to cytopiloyne+H2O - site K","synonyms":[{"name":"Cytopiloyne+water","type":"related"},{"name":"nucleophilic addition to cytopiloyne+H2O","type":"related"}],"termid":"MOD:01267"}


id: GO:0097291
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A renal system process in which phosphate ions are taken up from the collecting ducts and proximal and distal loops of the nephron. In non-mammalian species, absorption may occur in related structures.","definition_xrefs":["PMID:18784102","GOC:lb","PMID:22506049"],"direct_ancestors":[{"relation_name":"is_a","term_name":"renal absorption","termid":"GO:0070293"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"renal phosphate ion absorption","synonyms":[{"name":"renal phosphate absorption","type":"exact"}],"termid":"GO:0097291"}


id: PBO:0069787
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1073, pseudogene","termid":"PBO:0069787"}


id: MONDO:0018818
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Guillain-Barre syndrome","termid":"MONDO:0016218"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"facial diplegia with paresthesias","secondary_identifiers":["GARD:21984","MEDGEN:1798949","Orphanet:480701","UMLS:C5567526"],"synonyms":[{"name":"facial diplegia with paresthesias variant of GBS","type":"exact"},{"name":"facial diplegia with paresthesias variant of Guillain-Barre syndrome","type":"exact"},{"name":"facial diplegia with paresthesias variant of Guillain-Barré syndrome","type":"exact"}],"termid":"MONDO:0018818","xrefs":{"Monarch":{"xref_id":"0018818"}}}


id: PBO:0004888
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Stm1 homolog (predicted)","termid":"PBO:0004888"}


id: GO:0140291
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The removal of ADP-ribose from ADP-ribosylglutamate.","definition_xrefs":["PMID:23481255"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein de-ADP-ribosylation","termid":"GO:0051725"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-glutamate ADP-deribosylation","termid":"GO:0140291"}


id: PBO:0051961
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inositol 1,4,5-trisphosphate receptor interacting protein","termid":"PBO:0051961"}


id: GO:0001647
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with cytokinin and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex.","definition_xrefs":["GOC:dph","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor activity","termid":"GO:0004930"},{"relation_name":"is_a","term_name":"cytokinin receptor activity","termid":"GO:0009884"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"G protein-coupled cytokinin receptor activity","synonyms":[{"name":"G protein coupled cytokinin receptor activity","type":"exact"},{"name":"G-protein coupled cytokinin receptor activity","type":"exact"},{"name":"cytokinin receptor activity, G-protein coupled","type":"exact"}],"termid":"GO:0001647"}


id: SO:0000182
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A transposon where the mechanism of transposition is via a DNA intermediate.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transposable_element","termid":"SO:0000101"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA_transposon","synonyms":[{"name":"DNA transposon","type":"exact"},{"name":"class II","type":"related"},{"name":"class II transposon","type":"exact"}],"termid":"SO:0000182"}


id: PBO:0038803
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADAM7 antisense RNA 2","termid":"PBO:0038803"}


id: PBO:0050290
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hepatocyte nuclear factor 4 alpha","termid":"PBO:0050290"}


id: PBO:0062314
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily W member 2","termid":"PBO:0062314"}


id: PBO:0054084
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1435","termid":"PBO:0054084"}


id: PBO:0064672
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A pseudogene 7","termid":"PBO:0064672"}


id: GO:0072215
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of metanephros development. Metanephros development is the process whose specific outcome is the progression of the metanephros over time, from its formation to the mature structure. The metanephros is an endocrine and metabolic organ that filters the blood and excretes the end products of body metabolism in the form of urine.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of kidney development","termid":"GO:0090183"},{"relation_name":"regulates","term_name":"metanephros development","termid":"GO:0001656"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of metanephros development","termid":"GO:0072215"}


id: PBO:0000808
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PMT family","termid":"PBO:0000808"}


id: PBO:0083423
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the uncharacterized ORF HUA1/YGR268C","termid":"PBO:0083423"}


id: PBO:0030889
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_mitotic_DNA_replication","termid":"PBO:0030889"}


id: FYPO:0005839
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate, or speed, of medial membrane band assembly is increased. Medial membrane band assembly is the assembly of a sterol-rich region of the plasma membrane at the cell surface overlying the contractile ring.","definition_xrefs":["PomBase:mah","GO:0032130"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cytokinesis","termid":"FYPO:0000032"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000032","FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0000631"],"is_obsolete":false,"name":"increased rate of medial membrane band assembly","synonyms":[{"name":"increased rate of medial membrane band assembly during mitotic cell cycle","type":"related"},{"name":"increased rate of medial membrane band assembly during vegetative growth","type":"exact"},{"name":"increased rate of medial membrane band formation","type":"exact"}],"termid":"FYPO:0005839"}


id: PBO:0083048
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dethiobiotin synthetase; catalyzes the third step in the biotin biosynthesis pathway; BIO4 is in a cluster of 3 genes (BIO3, BIO4, and BIO5) that mediate biotin synthesis; BIO3 and BIO4 were acquired by horizontal gene transfer (HGT) from bacteria; expression appears to be repressed at low iron levels","termid":"PBO:0083048"}


id: GO:0061567
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of introducing a phosphate group into dCMP, deoxycytidine monophosphate, to produce dCDP. Addition of two phosphate groups produces dCTP.","definition_xrefs":["GOC:dph","PMID:23416111"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside monophosphate phosphorylation","termid":"GO:0046940"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0055086"],"is_obsolete":false,"name":"dCMP phosphorylation","termid":"GO:0061567"}


id: GO:0032927
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the activity of any activin receptor signaling pathway.","definition_xrefs":["GOC:BHF","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of activin receptor signaling pathway","termid":"GO:0032925"},{"relation_name":"is_a","term_name":"positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway","termid":"GO:0090100"},{"relation_name":"positively_regulates","term_name":"activin receptor signaling pathway","termid":"GO:0032924"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of activin receptor signaling pathway","synonyms":[{"name":"activation of activin receptor signaling pathway","type":"narrow"},{"name":"positive regulation of activin receptor signalling pathway","type":"exact"},{"name":"positive regulation of activin signaling pathway","type":"related"},{"name":"positive regulation of activin signalling pathway","type":"related"},{"name":"stimulation of activin receptor signaling pathway","type":"narrow"},{"name":"up regulation of activin receptor signaling pathway","type":"exact"},{"name":"up-regulation of activin receptor signaling pathway","type":"exact"},{"name":"upregulation of activin receptor signaling pathway","type":"exact"}],"termid":"GO:0032927"}


id: PATO:0001781
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A thickness quality which lacks pattern.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thickness","termid":"PATO:0000915"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"irregular thickness","termid":"PATO:0001781"}


id: GO:0042481
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the formation and development of a tooth or teeth.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of animal organ morphogenesis","termid":"GO:2000027"},{"relation_name":"regulates","term_name":"odontogenesis","termid":"GO:0042476"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of odontogenesis","secondary_identifiers":["GO:0042484"],"synonyms":[{"name":"regulation of odontogenesis of calcareous or chitinous tooth","type":"narrow"},{"name":"regulation of tooth development","type":"exact"}],"termid":"GO:0042481"}


id: MONDO:0044281
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Cis-3-hexen-1-ol (C3HEX) is present in a wide range of foods and beverages, including wine and spirits, olive oil, vegetables, fruit, and green tea. C3HEX is commonly associated with sensory characteristics such as 'green' and 'grassy.' The probability of an individual's ability to detect C3HEX at a particular intensity (the R-index) can be estimated, and the threshold for detection is normally distributed (summary by {1:Jaeger et al., 2010}).","definition_xrefs":["OMIM:615082"],"gene_count":0,"genotype_count":0,"name":"obsolete c3hex, ability to smell (obsolete MONDO:0044281)","synonyms":[{"name":"C3HEX, ability to smell","type":"exact"}],"termid":"MONDO:0044281","xrefs":{"Monarch":{"xref_id":"0044281"}}}


id: GO:0006727
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of ommochromes, any of a large group of natural polycyclic pigments commonly found in the Arthropoda, particularly in the ommatidia of the compound eye.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"eye pigment biosynthetic process","termid":"GO:0006726"},{"relation_name":"is_a","term_name":"ocellus pigment biosynthetic process","termid":"GO:0008055"},{"relation_name":"is_a","term_name":"ommochrome metabolic process","termid":"GO:0046152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"ommochrome biosynthetic process","synonyms":[{"name":"ommochrome anabolism","type":"exact"},{"name":"ommochrome biosynthesis","type":"exact"},{"name":"ommochrome formation","type":"exact"},{"name":"ommochrome synthesis","type":"exact"}],"termid":"GO:0006727"}


id: PBO:0043545
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collagen type I alpha 2 chain","termid":"PBO:0043545"}


id: GO:0140757
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"An thiol-dependent isopeptidase activity that cleaves NEDD8 from a target protein to which it is conjugated.","definition_xrefs":["PMID:25628956"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cysteine-type peptidase activity","termid":"GO:0008234"},{"relation_name":"is_a","term_name":"deNEDDylase activity","termid":"GO:0019784"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0008233"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0003824","GO:0140096","GO:0016787","GO:0008233","GO:0003674"],"is_obsolete":false,"name":"cysteine-type deNEDDylase activity","termid":"GO:0140757"}


id: PBO:0043847
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carboxypeptidase X, M14 family member 2","termid":"PBO:0043847"}


id: GO:0044322
data:
  {"annotated_genes":["SJAG_01858"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[67100],"is_not":false,"summary":null,"term":"GO:0044322"}]},"cv_name":"cellular_component","definition":"A subcompartment of the endoplasmic reticulum in which proteins with improper or incorrect folding accumulate. Enzymes in this compartment direct proteins with major folding problems to translocation to the cytosol and degradation, and proteins with minor folding problems to the ER, to interact with chaperon proteins.","definition_xrefs":["PMID:11408579"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"endoplasmic reticulum","termid":"GO:0005783"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01858":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005783"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005783","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"endoplasmic reticulum quality control compartment","references_by_uniquename":{"GO_REF:0000108":null},"synonyms":[{"name":"ER quality control compartment","type":"exact"},{"name":"ER-derived quality control compartment","type":"related"},{"name":"ERQC","type":"exact"}],"termid":"GO:0044322","terms_by_termid":{"GO:0044322":null}}


id: PBO:0076829
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TEPSIN adaptor related protein complex 4 accessory protein","termid":"PBO:0076829"}


id: PBO:0049660
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H4 clustered histone 14","termid":"PBO:0049660"}


id: PBO:0065044
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRELI domain containing 2 pseudogene 1","termid":"PBO:0065044"}


id: PBO:0075612
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPOUT domain containing methyltransferase 1","termid":"PBO:0075612"}


id: PBO:0081178
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger FYVE-type containing 28","termid":"PBO:0081178"}


id: PBO:0039816
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor 6","termid":"PBO:0039816"}


id: PBO:0055923
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat containing 37 member A11, pseudogene","termid":"PBO:0055923"}


id: PBO:0076361
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SZRD1 pseudogene 1","termid":"PBO:0076361"}


id: PBO:0081445
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 302","termid":"PBO:0081445"}


id: PBO:0086294
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein with a role in mitochondrial DNA recombinational repair; also involved in interstrand cross-link repair; binds to and catalyzes the annealing of single-stranded mtDNA; oligomerizes to form rings and filaments; related to Rad52-type recombination proteins, with limited overall similarity but sharing conserved functionally important residues; component of the mitochondrial nucleoid, required for the repair of oxidative mtDNA damage and mitochondrial genome maintenance","termid":"PBO:0086294"}


id: PBO:0116294
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Peptidase that deconjugates Smt3/SUMO-1 peptides from proteins; plays a role in chromosome cohesion at centromeric regions, recovery from checkpoint arrest induced by DNA damage or DNA replication defect, and RNA splicing; potential Cdc28p substrate; human homolog PML implicated in promyelocytic leukemia can partially complement yeast null mutant","termid":"PBO:0116294"}


id: PBO:0051554
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 9 receptor pseudogene 4","termid":"PBO:0051554"}


id: GO:0008303
data:
  {"annotated_genes":["SJAG_03292","SJAG_03672","SJAG_05278","SJAG_02776","SJAG_00846"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[74876,75698,74874,71177,70976],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042765"}]},"cv_name":"cellular_component","definition":"A protein complex that contains one or more cysteine-type endopeptidases (also called caspases), which give the complex a peptidase activity with specificity for the hydrolysis of aspartyl bonds. These complexes may be involved e.g. in apoptotic or inflammation processes.","definition_xrefs":["GOC:mtg_apoptosis","PMID:15569692","GOC:cna"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endopeptidase complex","termid":"GO:1905369"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00846":null,"SJAG_02776":null,"SJAG_03292":null,"SJAG_03672":null,"SJAG_05278":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"caspase complex","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"cysteine-type endopeptidase complex","type":"exact"}],"termid":"GO:0008303","terms_by_termid":{"GO:0042765":null}}


id: PBO:0077010
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thrombospondin 1","termid":"PBO:0077010"}


id: GO:0018971
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving toluene, a volatile monoaromatic hydrocarbon found in crude petroleum and petroleum products, that occur in the absence of oxygen.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"toluene metabolic process","termid":"GO:0018970"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anaerobic toluene metabolic process","secondary_identifiers":["UM-BBD_pathwayID:tol2"],"synonyms":[{"name":"anaerobic toluene metabolism","type":"exact"}],"termid":"GO:0018971"}


id: PBO:0070375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"roundabout guidance receptor 2","termid":"PBO:0070375"}


id: PBO:0016981
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OrDered Splicing","termid":"PBO:0016981"}


id: PBO:0034137
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-directly_regulates","termid":"PBO:0034137"}


id: GO:0052137
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The movement of a motile cell or organism in response to environmental oxygen within its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete aerotaxis in host (obsolete GO:0052137)","synonyms":[{"name":"aerotaxis within host","type":"exact"}],"termid":"GO:0052137"}


id: PR:000046670
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe sre2 gene.","definition_xrefs":["PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor sre2 (Schizosaccharomyces pombe)","pombase_gene_id":"SPBC354.05c","synonyms":[{"name":"Spom-sre2","type":"exact"},{"name":"sterol regulatory element-binding protein 2 (Schizosaccharomyces pombe)","type":"exact"}],"termid":"PR:000046670"}


id: GO:0120001
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A scallop-shaped plaque, also referred to as an asymmetric unit membrane (AUM), found in the apical plasma membrane of urothelial superficial (umbrella) cells which form a a barrier to the passage of water and soluble toxic compounds found in urine. The plaques are thickened regions of membrane composed of uroplakin transmembrane proteins which form a crystalline array.","definition_xrefs":["PMID:21887288","GOC:krc","PMID:21468280"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane","termid":"GO:0005886"},{"relation_name":"is_a","term_name":"plasma membrane region","termid":"GO:0098590"},{"relation_name":"part_of","term_name":"apical plasma membrane","termid":"GO:0016324"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0005886"],"is_obsolete":false,"name":"apical plasma membrane urothelial plaque","synonyms":[{"name":"AUM","type":"related"},{"name":"asymmetric unit membrane","type":"exact"}],"termid":"GO:0120001"}


id: PATO:0002137
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A readiopacity quality inhering in a bearer by virtue of the bearer's prevention of the passage of electromagnetic radiation.","definition_xrefs":["Wikipedia:Wikipedia"],"direct_ancestors":[{"relation_name":"is_a","term_name":"radiopacity","termid":"PATO:0002136"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"radiopaque","termid":"PATO:0002137"}


id: MONDO:0017947
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hereditary cerebral hemorrhage with amyloidosis (HCHWA), Italian type is a form of HCHWA characterized by an age of onset of 50 years of age, dementia and lobar intracerebral hemorrhage.","definition_xrefs":["Orphanet:324713"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cerebral amyloid angiopathy, APP-related","termid":"MONDO:0011583"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0021179"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0021179"],"is_obsolete":false,"name":"ABeta amyloidosis, Italian type","secondary_identifiers":["ICD10EXP:E85.4+","ICD10EXP:I68.0*","MEDGEN:854854","UMLS:C3888308","GARD:17491"],"synonyms":[{"name":"ABetaE22K amyloidosis","type":"exact"},{"name":"HCHWA, Italian type","type":"exact"},{"name":"cerebral amyloid angiopathy, APP-related, Italian variant","type":"exact"},{"name":"hereditary cerebral haemorrhage with amyloidosis, Italian type","type":"exact"},{"name":"hereditary cerebral hemorrhage with amyloidosis, Italian type","type":"exact"}],"termid":"MONDO:0017947","xrefs":{"Monarch":{"xref_id":"0017947"}}}


id: FYPO:0001575
data:
  {"alleles_by_uniquename":{"SJAG_00266:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00266","name":"atf1delta","uniquename":"SJAG_00266:allele-1"},"SJAG_02592:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02592","name":"sty1delta","uniquename":"SJAG_02592:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[119598,119610],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004481"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which vegetative cell population growth does not occur, although cells remain viable.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased vegetative cell population growth","termid":"FYPO:0001355"},{"relation_name":"is_a","term_name":"abolished biological process","termid":"FYPO:0005448"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00266":null,"SJAG_02592":null},"genotype_count":2,"genotypes_by_uniquename":{"atf1delta":{"display_name":"atf1delta","display_uniquename":"atf1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00266:allele-1","expression":"Null"}]}]},"sty1delta":{"display_name":"sty1delta","display_uniquename":"sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002058"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000003","FYPO:0002058","FYPO:0000139","FYPO:0002060","FYPO:0002057","FYPO:0005447"],"is_obsolete":false,"name":"abolished vegetative cell population growth","references_by_uniquename":{"PMID:31150379":null},"single_locus_annotated_genes":["SJAG_02592","SJAG_00266"],"single_locus_genotype_uniquenames":["sty1delta","atf1delta"],"synonyms":[{"name":"abolished growth of population of viable vegetative cells","type":"exact"},{"name":"abolished vegetative cell population growth, viable cells","type":"exact"},{"name":"vegetative cell population growth abolished","type":"exact"},{"name":"vegetative population growth abolished","type":"exact"}],"termid":"FYPO:0001575","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000137":null,"FYPO:0004481":null}}


id: GO:1990668
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The joining of the lipid bilayer membrane around a vesicle to the lipid bilayer membrane of the ERGIC. This can involve anterograde or retrograde transport vesicles.","definition_xrefs":["GOC:bhm","PMID:16038056","PMID:24119662"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle fusion","termid":"GO:0006906"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0008150","GO:0061024","GO:0006810","GO:0016192"],"is_obsolete":false,"name":"vesicle fusion with endoplasmic reticulum-Golgi intermediate compartment (ERGIC) membrane","synonyms":[{"name":"vesicle fusion with ER-Golgi intermediate compartment (ERGIC) membrane","type":"exact"},{"name":"vesicle fusion with ER-Golgi intermediate compartment membrane","type":"exact"},{"name":"vesicle fusion with ERGIC membrane","type":"exact"},{"name":"vesicle fusion with endoplasmic reticulum-Golgi intermediate compartment membrane","type":"exact"}],"termid":"GO:1990668"}


id: GO:0004970
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transmembrane transfer of an ion by a channel that opens when glutamate has been bound by the channel complex or one of its constituent parts.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glutamate receptor activity","termid":"GO:0008066"},{"relation_name":"is_a","term_name":"amino acid transmembrane transporter activity","termid":"GO:0015171"},{"relation_name":"is_a","term_name":"transmitter-gated monoatomic ion channel activity","termid":"GO:0022824"},{"relation_name":"is_a","term_name":"carboxylic acid transmembrane transporter activity","termid":"GO:0046943"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0038023","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"glutamate-gated receptor activity","synonyms":[{"name":"ionotropic glutamate receptor activity","type":"exact"}],"termid":"GO:0004970"}


id: PBO:0073299
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin 14 pseudogene 21","termid":"PBO:0073299"}


id: GO:0014032
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process aimed at the progression of a neural crest cell over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell.","definition_xrefs":["GOC:ef","GOC:dh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"stem cell development","termid":"GO:0048864"},{"relation_name":"part_of","term_name":"neural crest cell differentiation","termid":"GO:0014033"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neural crest cell development","termid":"GO:0014032"}


id: FYPO:0005114
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the endosome(s) is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization during vegetative growth","termid":"FYPO:0000644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001312","FYPO:0000138","FYPO:0001320","FYPO:0000257"],"is_obsolete":false,"name":"normal protein localization to endosome","synonyms":[{"name":"normal protein localisation to endosome","type":"exact"},{"name":"normal protein localization to endosome during mitotic cell cycle","type":"related"},{"name":"normal protein localization to endosome during vegetative growth","type":"exact"},{"name":"normal protein targeting to endosome","type":"related"}],"termid":"FYPO:0005114"}


id: FYPO:0002648
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins, or of specific protein sites, occurs to a greater extent than normal during prometaphase of mitosis.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein phosphorylation during vegetative growth","termid":"FYPO:0001038"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0002494","FYPO:0001320","FYPO:0000002","FYPO:0002274","FYPO:0001985"],"is_obsolete":false,"name":"increased protein phosphorylation during mitotic prometaphase","synonyms":[{"name":"increased protein phosphorylation during mitotic prometaphase during vegetative growth","type":"exact"},{"name":"increased protein phosphorylation during prometaphase of mitosis","type":"exact"}],"termid":"FYPO:0002648"}


id: GO:0043836
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: xanthine + H2O = 4-ureido-5-imidazole carboxylate.","definition_xrefs":["PMID:13278326","MetaCyc:R127-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides","termid":"GO:0016812"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824","GO:0016810"],"is_obsolete":false,"name":"xanthine hydrolase activity","synonyms":[{"name":"xanthinase activity","type":"exact"}],"termid":"GO:0043836"}


id: PBO:0112864
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase feature property types","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pombephosphoproteomics_unige_ch_starvation_mating_gene","termid":"PBO:0112864"}


id: GO:0006389
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:krc"],"gene_count":0,"genotype_count":0,"name":"obsolete tRNA-Y splicing (obsolete GO:0006389)","synonyms":[{"name":"tRNA-Y splicing","type":"exact"}],"termid":"GO:0006389"}


id: SO:0001803
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A transcript processing variant whereby polyadenylation of the encoded transcript is decreased with respect to the reference.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyadenylation_variant","termid":"SO:0001545"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased_polyadenylation_variant","synonyms":[{"name":"decreased polyadenylation variant","type":"exact"}],"termid":"SO:0001803"}


id: MONDO:0010169
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Usher syndrome in which the cause of the disease is a mutation in the USH2A gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Usher syndrome type 2","termid":"MONDO:0016484"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025"],"is_obsolete":false,"name":"Usher syndrome type 2A","secondary_identifiers":["MEDGEN:338513","GARD:15241","MESH:C536490","OMIM:276901","DOID:0110838","ICD10CM:H35.5","UMLS:C1848634"],"synonyms":[{"name":"US2","type":"related"},{"name":"USH2A","type":"exact"},{"name":"USH2A Usher syndrome","type":"exact"},{"name":"USHER syndrome, type IIA","type":"related"},{"name":"Usher syndrome caused by mutation in USH2A","type":"exact"},{"name":"Usher syndrome type 2A","type":"exact"},{"name":"Usher syndrome type IIA","type":"exact"},{"name":"Usher syndrome, type 2A","type":"related"},{"name":"retinal disease in usher syndrome type IIA, modifier of","type":"exact"}],"termid":"MONDO:0010169","xrefs":{"Monarch":{"xref_id":"0010169"}}}


id: MONDO:0014279
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete arrhythmogenic right ventricular dysplasia, familial, 13 (obsolete MONDO:0014279)","termid":"MONDO:0014279","xrefs":{"Monarch":{"xref_id":"0014279"}}}


id: PBO:0084369
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Lipid phosphate phosphatase; catalyzes Mg(2+)-independent dephosphorylation of phosphatidic acid (PA), lysophosphatidic acid, and diacylglycerol pyrophosphate; involved in control of the cellular levels of phosphatidylinositol and PA","termid":"PBO:0084369"}


id: PBO:0087837
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Thiosulfate sulfurtransferase; contains a rhodanese-like domain; localized to the mitochondrial outer membrane; protein abundance increases in response to DNA replication stress; similar to the human TSTD gene","termid":"PBO:0087837"}


id: GO:0016413
data:
  {"annotated_genes":["SJAG_04305","SJAG_02654","SJAG_00395","SJAG_03305"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[70299,70946],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016287"},{"annotations":[76711],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004414"},{"annotations":[76483],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009001"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of an acetyl group to an oxygen atom on the acceptor molecule.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acyltransferase activity","termid":"GO:0008374"},{"relation_name":"is_a","term_name":"acetyltransferase activity","termid":"GO:0016407"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00395":null,"SJAG_02654":null,"SJAG_03305":null,"SJAG_04305":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0016746","GO:0003824"],"is_obsolete":false,"name":"O-acetyltransferase activity","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0016413","terms_by_termid":{"GO:0004414":null,"GO:0009001":null,"GO:0016287":null}}


id: PBO:0034373
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-overlaps_sequence_of","termid":"PBO:0034373"}


id: MONDO:1011150
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Ankylosing spondylitis that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ankylosing spondylitis, non-human animal","termid":"MONDO:1010292"},{"relation_name":"is_a","term_name":"rheumatoid arthritis, dog","termid":"MONDO:1011153"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankylosing spondylitis, dog","secondary_identifiers":["OMIA:000046-9615"],"termid":"MONDO:1011150","xrefs":{"Monarch":{"xref_id":"1011150"}}}


id: GO:0034071
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + aminoglycoside = ADP + phosphoaminoglycoside.","definition_xrefs":["GOC:mah","GOC:cb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016301","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"aminoglycoside phosphotransferase activity","secondary_identifiers":["EC:2.7.1.190"],"synonyms":[{"name":"aminoglycoside kinase activity","type":"exact"}],"termid":"GO:0034071"}


id: PR:000027549
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A histone H2A.2 unmodified form in Schizosaccharomyces pombe.","definition_xrefs":["PMID:21516229","PMID:15226425","PMID:19965387","PomBase:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H2A-beta (Schizosaccharomyces pombe 972h-)","termid":"PR:P04910"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H2A-beta unmodified form (Schizosaccharomyces pombe)","pombase_gene_id":"SPAC19G12.06c","synonyms":[{"name":"Spom-HTA2/UnMod","type":"exact"}],"termid":"PR:000027549"}


id: MONDO:0019937
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare gynecologic or obstetric disease (obsolete MONDO:0019937)","secondary_identifiers":["Orphanet:96344"],"termid":"MONDO:0019937","xrefs":{"Monarch":{"xref_id":"0019937"}}}


id: MONDO:0006983
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An uncommon neurovascular condition seen with exertion of the upper extremity. It is usually caused by atherosclerotic stenosis or occlusion of the subclavian artery proximal to the origin of the vertebral artery. In order to maintain adequate perfusion of the arm during exercise on the affected side, the narrowed subclavian artery siphons off retrograde blood flow from the ipsilateral vertebral artery. This is possible due to lower blood pressure distal to the site of narrowing and collateral circulation through the circle of Willis. Affected individuals may remain asymptomatic until the oxygen demand generated from upper extremity exercise requires a large enough compensatory volume of blood to be diverted from the vertebral artery to provoke vertebrobasilar insufficiency and its accompanying neurological sequelae. Presenting clinical signs may include pain or numbness of the affected arm (with diminished pulses and a brachial systolic blood pressure differential of greater than 20 mmHg as compared to the opposite arm), vertigo, tinnitus, dysarthria, diplopia and syncope. Notably, unlike cerebral infarction, the clinical course does not lead to chronic neurologic disability. Prognosis for recovery of normal anterograde circulation is favorable following endovascular or surgical intervention.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"cerebrovascular disorder","termid":"MONDO:0011057"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"subclavian steal syndrome","secondary_identifiers":["MedDRA:10042335","NCIT:C35044","UMLS:C0038531","ICD9:435.2","icd11.foundation:2123391417","DOID:13002","SCTID:15258001","MEDGEN:20983","MESH:D013349"],"synonyms":[{"name":"subclavian artery stenosis","type":"exact"},{"name":"subclavian steal phenomenon","type":"exact"},{"name":"subclavian steal steno-occlusive disease","type":"exact"}],"termid":"MONDO:0006983","xrefs":{"Monarch":{"xref_id":"0006983"}}}


id: GO:0018311
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of N4-hydroxymethyl-L-asparagine from other compounds, including peptidyl-asparagine.","definition_xrefs":["RESID:AA0236"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-N4-hydroxymethyl-L-asparagine biosynthetic process from peptidyl-asparagine (obsolete GO:0018311)","synonyms":[{"name":"peptidyl-N4-hydroxymethyl-L-asparagine anabolism from peptidyl-asparagine","type":"exact"},{"name":"peptidyl-N4-hydroxymethyl-L-asparagine formation from peptidyl-asparagine","type":"exact"},{"name":"peptidyl-N4-hydroxymethyl-L-asparagine synthesis from peptidyl-asparagine","type":"exact"}],"termid":"GO:0018311"}


id: PR:O94349
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC61.05 gene.","definition_xrefs":["UniProtKB:O94349","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized membrane protein C61.05 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC61.05","synonyms":[{"name":"Spom972h-SPCC61.05","type":"exact"}],"termid":"PR:O94349"}


id: PBO:0025537
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by N. crassa TNC","termid":"PBO:0025537"}


id: PBO:0109599
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARB2 cotranscriptional regulator A","termid":"PBO:0109599"}


id: GO:0051050
data:
  {"annotated_genes":["SJAG_00991","SJAG_03591","SJAG_05346","SJAG_02605","SJAG_00845","SJAG_04920","SJAG_03453","SJAG_02592","SJAG_01245","SJAG_04597","SJAG_04464","SJAG_04312","SJAG_01805","SJAG_03048","SJAG_04551","SJAG_00661"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[102464],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905665"},{"annotations":[104016],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045807"},{"annotations":[100502],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045921"},{"annotations":[90251],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035432"},{"annotations":[110867,93657,92065,99200],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905589"},{"annotations":[99201,92066,93658],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905534"},{"annotations":[93659],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905626"},{"annotations":[94737],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902854"},{"annotations":[111342,102171,94131,100764],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046827"},{"annotations":[91174,94695,102704],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042307"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of biological process","termid":"GO:0048518"},{"relation_name":"is_a","term_name":"regulation of transport","termid":"GO:0051049"},{"relation_name":"positively_regulates","term_name":"transport","termid":"GO:0006810"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00661":null,"SJAG_00845":null,"SJAG_00991":null,"SJAG_01245":null,"SJAG_01805":null,"SJAG_02592":null,"SJAG_02605":null,"SJAG_03048":null,"SJAG_03453":null,"SJAG_03591":null,"SJAG_04312":null,"SJAG_04464":null,"SJAG_04551":null,"SJAG_04597":null,"SJAG_04920":null,"SJAG_05346":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of transport","type":"narrow"},{"name":"stimulation of transport","type":"narrow"},{"name":"up regulation of transport","type":"exact"},{"name":"up-regulation of transport","type":"exact"},{"name":"upregulation of transport","type":"exact"}],"termid":"GO:0051050","terms_by_termid":{"GO:0035432":null,"GO:0042307":null,"GO:0045807":null,"GO:0045921":null,"GO:0046827":null,"GO:1902854":null,"GO:1905534":null,"GO:1905589":null,"GO:1905626":null,"GO:1905665":null}}


id: GO:0015963
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of diadenosine triphosphate, a derivative of the nucleoside adenosine with three phosphate groups attached.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diadenosine polyphosphate biosynthetic process","termid":"GO:0015960"},{"relation_name":"is_a","term_name":"diadenosine triphosphate metabolic process","termid":"GO:0015962"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0055086"],"is_obsolete":false,"name":"diadenosine triphosphate biosynthetic process","synonyms":[{"name":"diadenosine triphosphate anabolism","type":"exact"},{"name":"diadenosine triphosphate biosynthesis","type":"exact"},{"name":"diadenosine triphosphate formation","type":"exact"},{"name":"diadenosine triphosphate synthesis","type":"exact"}],"termid":"GO:0015963"}


id: GO:0061784
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of (1->4)-beta linkages of N-acetyl-D-glucosamine (GlcNAc) from peptidoglycan.","definition_xrefs":["PMID:22748813","GOC:dph","GOC:jh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosaminidase activity","termid":"GO:0015929"},{"relation_name":"is_a","term_name":"peptidoglycan muralytic activity","termid":"GO:0061783"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016798"}],"interesting_parent_ids":["GO:0003824","GO:0016798","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"peptidoglycan N-acetylglucosaminidase activity","termid":"GO:0061784"}


id: PBO:0027830
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_ascospore_release_from_ascus","termid":"PBO:0027830"}


id: PBO:0004807
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acetohydroxyacid reductoisomerase (predicted)","termid":"PBO:0004807"}


id: PBO:0066284
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein Y-linked family 2 member H, pseudogene","termid":"PBO:0066284"}


id: MONDO:0054582
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Townes-Brocks syndrome","termid":"MONDO:0007142"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"Townes-Brocks syndrome 2","secondary_identifiers":["OMIM:617466","UMLS:C4479534","MEDGEN:1381939"],"synonyms":[{"name":"TBS2","type":"related"},{"name":"Townes-Brocks syndrome 2","type":"exact"}],"termid":"MONDO:0054582","xrefs":{"Monarch":{"xref_id":"0054582"}}}


id: GO:0070684
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The reproductive process in which coagulated semen becomes liquid following ejaculation, allowing the progressive release of motile spermatozoa.","definition_xrefs":["PMID:18482984","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal reproductive process","termid":"GO:0048609"},{"relation_name":"part_of","term_name":"insemination","termid":"GO:0007320"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"seminal clot liquefaction","synonyms":[{"name":"semen liquefaction","type":"exact"}],"termid":"GO:0070684"}


id: PBO:0043869
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cysteine rich C-terminal 1","termid":"PBO:0043869"}


id: PBO:0113237
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Non-catalytic epsilon subunit of the oligosaccharyltransferase (OST) complex; the OST complex catalyzes asparagine-linked glycosylation of newly synthesized proteins in the ER; forms a pocket with Wbp1p involved in binding terminal glucose units of the donor glycan; located in the ER lumen","termid":"PBO:0113237"}


id: GO:0030839
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the assembly of intermediate filaments by the addition of monomers to a filament.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein polymerization","termid":"GO:0032271"},{"relation_name":"is_a","term_name":"regulation of intermediate filament polymerization or depolymerization","termid":"GO:0045108"},{"relation_name":"regulates","term_name":"intermediate filament polymerization","termid":"GO:0045107"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0065003"],"is_obsolete":false,"name":"regulation of intermediate filament polymerization","termid":"GO:0030839"}


id: MONDO:0022890
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"craniosynostosis","termid":"MONDO:0015469"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"craniosynostosis Fontaine type","secondary_identifiers":["GARD:1595"],"termid":"MONDO:0022890","xrefs":{"Monarch":{"xref_id":"0022890"}}}


id: PBO:0003900
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iron sulfur cluster assembly protein (predicted)","termid":"PBO:0003900"}


id: MONDO:0030483
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An autosomal recessive immune disorder characterized specifically by the development of disseminated mycobacterial disease following vaccination with BCG. The single patient described did not develop other clinical infectious diseases, although serology documented exposure to various viruses and bacteria. Immunologic workup shows defective development of certain innate immunologic cells and decreased production of gamma-interferon (IFNG). Additional manifestations include persistent reactive airway disease associated with increased production of Th2 cytokines.","direct_ancestors":[{"relation_name":"is_a","term_name":"immunodeficiency disease","termid":"MONDO:0021094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"immunodeficiency 88","secondary_identifiers":["UMLS:C5562026","MEDGEN:1794236","OMIM:619630"],"synonyms":[{"name":"IMD88","type":"exact"},{"name":"Mendelian susceptibility to mycobacterial diseases due to TBX21 deficiency","type":"exact"}],"termid":"MONDO:0030483","xrefs":{"Monarch":{"xref_id":"0030483"}}}


id: PBO:0038830
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADAM metallopeptidase with thrombospondin type 1 motif 3","termid":"PBO:0038830"}


id: PBO:0004809
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homoserine O-acetyltransferase Met6","termid":"PBO:0004809"}


id: MONDO:0020027
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Rare allergic hypersensitivity disease.","gene_count":0,"genotype_count":0,"name":"obsolete rare allergic disease (obsolete MONDO:0020027)","secondary_identifiers":["Orphanet:98050"],"synonyms":[{"name":"rare allergic disease","type":"exact"},{"name":"rare allergic hypersensitivity disease","type":"exact"},{"name":"rare allergy","type":"exact"}],"termid":"MONDO:0020027","xrefs":{"Monarch":{"xref_id":"0020027"}}}


id: FYPO:0003504
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of protein measured in the plasma membrane is higher than normal when the cell is in the vegetative growth phase of the life cycle. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein level during vegetative growth","termid":"FYPO:0001327"},{"relation_name":"is_a","term_name":"abnormal plasma membrane during vegetative growth","termid":"FYPO:0003278"},{"relation_name":"is_a","term_name":"altered level of substance in plasma membrane","termid":"FYPO:0008331"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"increased protein level in plasma membrane","synonyms":[{"name":"increased plasma membrane protein level during vegetative growth","type":"exact"},{"name":"increased protein level in cell membrane during vegetative growth","type":"exact"},{"name":"increased protein level in plasma membrane during mitotic cell cycle","type":"related"},{"name":"increased protein level in plasma membrane during vegetative growth","type":"exact"},{"name":"protein accumulation in plasma membrane","type":"exact"}],"termid":"FYPO:0003504"}


id: GO:0031714
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a C5a anaphylatoxin chemotactic receptor.","definition_xrefs":["GOC:nln","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor binding","termid":"GO:0001664"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"C5a anaphylatoxin chemotactic receptor binding","synonyms":[{"name":"C5a anaphylatoxin chemotactic receptor ligand","type":"narrow"}],"termid":"GO:0031714"}


id: PBO:0087934
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Translational elongation factor EF-1 alpha; GTP-bound active form, binds to and delivers aminoacylated tRNA to the A-site of ribosomes for elongation of nascent polypeptides; moonlighting function as an actin binding and bundling protein; association with GTPase Rho1p on the vacuolar membrane may facilitate F-actin remodeling; involved in tRNA re-export from the nucleus","termid":"PBO:0087934"}


id: GO:0048298
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of isotype switching to IgA isotypes.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of isotype switching","termid":"GO:0045830"},{"relation_name":"is_a","term_name":"regulation of isotype switching to IgA isotypes","termid":"GO:0048296"},{"relation_name":"positively_regulates","term_name":"isotype switching to IgA isotypes","termid":"GO:0048290"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0006310"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0006310"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006259"},{"rel_name":"positively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0006259","GO:0006310"],"is_obsolete":false,"name":"positive regulation of isotype switching to IgA isotypes","synonyms":[{"name":"activation of isotype switching to IgA isotypes","type":"narrow"},{"name":"positive regulation of class switch recombination to IgA isotypes","type":"exact"},{"name":"positive regulation of class switching to IgA isotypes","type":"exact"},{"name":"positive regulation of isotype switch recombination to IgA isotypes","type":"exact"},{"name":"stimulation of isotype switching to IgA isotypes","type":"narrow"},{"name":"up regulation of isotype switching to IgA isotypes","type":"exact"},{"name":"up-regulation of isotype switching to IgA isotypes","type":"exact"},{"name":"upregulation of isotype switching to IgA isotypes","type":"exact"}],"termid":"GO:0048298"}


id: GO:0000973
data:
  {"annotated_genes":["SJAG_04148","SJAG_03299","SJAG_00298","SJAG_04347"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[70151,70735,74563,75802],"is_not":false,"summary":null,"term":"GO:0000973"}]},"cv_name":"biological_process","definition":"The chromosome organization process in which the DNA sequence containing a gene transcribed by RNA polymerase II is maintained in a specific location at the nuclear periphery even after transcription has been repressed.","definition_xrefs":["PMID:17373856","PMID:18614049","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery","termid":"GO:0000972"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00298":null,"SJAG_03299":null,"SJAG_04148":null,"SJAG_04347":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery","type":"exact"}],"termid":"GO:0000973","terms_by_termid":{"GO:0000973":null}}


id: PR:Q9P7S4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- taf4 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P7S4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription initiation factor TFIID subunit 4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23G3.09","synonyms":[{"name":"Spom972h-taf4","type":"exact"},{"name":"TBP-associated factor 4 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P7S4"}


id: PBO:0068696
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 77, pseudogene","termid":"PBO:0068696"}


id: GO:0048260
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of receptor mediated endocytosis, the uptake of external materials by cells, utilizing receptors to ensure specificity of transport.","definition_xrefs":["GOC:tb","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of endocytosis","termid":"GO:0045807"},{"relation_name":"is_a","term_name":"regulation of receptor-mediated endocytosis","termid":"GO:0048259"},{"relation_name":"positively_regulates","term_name":"receptor-mediated endocytosis","termid":"GO:0006898"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0016192","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of receptor-mediated endocytosis","synonyms":[{"name":"activation of receptor mediated endocytosis","type":"narrow"},{"name":"positive regulation of receptor mediated endocytosis","type":"exact"},{"name":"stimulation of receptor mediated endocytosis","type":"narrow"},{"name":"up regulation of receptor mediated endocytosis","type":"exact"},{"name":"up-regulation of receptor mediated endocytosis","type":"exact"},{"name":"upregulation of receptor mediated endocytosis","type":"exact"}],"termid":"GO:0048260"}


id: GO:0035949
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of gluconeogenesis by stopping, preventing, or reducing the frequency, rate or extent of transcription from an RNA polymerase II promoter.","definition_xrefs":["GOC:dgf","PMID:17875938"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of gluconeogenesis by negative regulation of transcription from RNA polymerase II promoter (obsolete GO:0035949)","synonyms":[{"name":"positive regulation of gluconeogenesis by down regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of gluconeogenesis by down-regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of gluconeogenesis by downregulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of gluconeogenesis by inhibition of transcription from RNA polymerase II promoter","type":"narrow"},{"name":"positive regulation of gluconeogenesis by negative regulation of transcription from Pol II promoter","type":"exact"},{"name":"positive regulation of glucose biosynthesis by down regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of glucose biosynthesis by down-regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of glucose biosynthesis by downregulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of glucose biosynthesis by negative regulation of transcription from Pol II promoter","type":"exact"},{"name":"positive regulation of glucose biosynthesis by negative regulation of transcription from RNA polymerase II promoter","type":"related"},{"name":"positive regulation of glucose biosynthetic process by down regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of glucose biosynthetic process by down-regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of glucose biosynthetic process by downregulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"positive regulation of glucose biosynthetic process by negative regulation of transcription from Pol II promoter","type":"exact"},{"name":"positive regulation of glucose biosynthetic process by negative regulation of transcription from RNA polymerase II promoter","type":"exact"}],"termid":"GO:0035949"}


id: PBO:0045253
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynein axonemal light intermediate chain 1","termid":"PBO:0045253"}


id: MOD:01958
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts four L-cysteine residues and a two-iron two-sulfur cluster to bis-L-cysteinyl bisglutathion-S-yl diiron disulfide.","definition_xrefs":["RESID:AA0603","PubMed:17121859"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iron-sulfur cluster containing modification","termid":"MOD:00739"},{"relation_name":"is_a","term_name":"metal or metal cluster coordinated L-cysteine residue","termid":"MOD:02067"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"bis-L-cysteinyl bisglutathion-S-yl diiron disulfide","synonyms":[{"name":"bis-L-cysteinyl bisglutathion-S-yl diiron disulfide","type":"exact"},{"name":"di-mu-sulfido-bis(cysteinato)-1kappaS,2kappaS-bis(glutathionato)-1kappaS,2kappaS-diiron","type":"exact"},{"name":"mitochondrial glutaredoxin 2 dimer iron-sulfur cluster","type":"exact"},{"name":"plant glutaredoxin C1 dimer iron-sulfur cluster","type":"exact"}],"termid":"MOD:01958"}


id: PBO:0002059
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane alkali metal cation/H+ antiporter Sod22","termid":"PBO:0002059"}


id: PBO:0067755
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 54","termid":"PBO:0067755"}


id: PR:O14089
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- kap104 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14089"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"importin subunit beta-2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2F3.06c","synonyms":[{"name":"Spom972h-kap104","type":"exact"},{"name":"TRN (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Transportin (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"importin-104 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"karyopherin subunit beta-2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"karyopherin-104 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14089"}


id: PBO:0054262
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1647","termid":"PBO:0054262"}


id: PBO:0049820
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone deacetylase 11","termid":"PBO:0049820"}


id: PBO:0062483
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 8 subfamily A member 2 pseudogene","termid":"PBO:0062483"}


id: PR:O94521
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC1281.04 gene.","definition_xrefs":["UniProtKB:O94521","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyridoxal reductase 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1281.04","synonyms":[{"name":"PL reductase 2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"PL-red 2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-SPCC1281.04","type":"exact"}],"termid":"PR:O94521"}


id: GO:0034815
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: cis-4-(8-hydroxypyren-7-yl)-2-oxobut-3-enoate = 10-oxabenzo(def)chrysen-9-one + formate + H+.","definition_xrefs":["UM-BBD_reactionID:r1135"],"gene_count":0,"genotype_count":0,"name":"obsolete cis-4-(8-hydroxypyren-7-yl)-2-oxobut-3-enoate lyase activity (obsolete GO:0034815)","termid":"GO:0034815"}


id: PBO:0057529
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 646","termid":"PBO:0057529"}


id: PBO:0067266
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 340, pseudogene","termid":"PBO:0067266"}


id: PBO:0045406
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DPPA3 pseudogene 8","termid":"PBO:0045406"}


id: SO:0002092
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A UTR variant of exonic sequence of the 5' UTR.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"5_prime_UTR_variant","termid":"SO:0001623"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5_prime_UTR_exon_variant","synonyms":[{"name":"5 prime UTR exon variant","type":"exact"}],"termid":"SO:0002092"}


id: PBO:0074251
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier organic anion transporter family member 1B1","termid":"PBO:0074251"}


id: GO:0072513
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cardioblast proliferation in the second heart field. A cardioblast is a cardiac precursor cell. It is a cell that has been committed to a cardiac fate, but will undergo more cell division rather than terminally differentiating. The secondary heart field is the region of the heart that will form the majority of the mesodermal component of the right ventricle, the arterial pole (outflow tract) and the venous pole (inflow tract).","definition_xrefs":["GOC:rl","GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of secondary heart field cardioblast proliferation","termid":"GO:0003266"},{"relation_name":"is_a","term_name":"positive regulation of cell population proliferation","termid":"GO:0008284"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of secondary heart field cardioblast proliferation","synonyms":[{"name":"negative regulation of second heart field cardioblast proliferation","type":"exact"}],"termid":"GO:0072513"}


id: GO:0060827
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the rate, frequency, or extent of Wnt signaling through beta-catenin that results in the formation of the neural plate anterior/posterior pattern.","definition_xrefs":["GOC:sdb_2009","GOC:dph","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of canonical Wnt signaling pathway involved in neural plate anterior/posterior pattern formation (obsolete GO:0060827)","synonyms":[{"name":"regulation of Wnt receptor signaling pathway through beta-catenin involved in neural plate anterior/posterior pattern formation","type":"exact"},{"name":"regulation of canonical Wnt receptor signaling pathway involved in neural plate anterior/posterior pattern formation","type":"exact"},{"name":"regulation of canonical Wnt receptor signalling pathway involved in neural plate anterior/posterior pattern formation","type":"exact"},{"name":"regulation of canonical Wnt-activated signaling pathway involved in neural plate anterior/posterior pattern formation","type":"exact"}],"termid":"GO:0060827"}


id: PBO:0069339
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 599, pseudogene","termid":"PBO:0069339"}


id: PBO:0091945
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microtubule regulator","termid":"PBO:0091945"}


id: PBO:0070686
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7 pseudogene 57","termid":"PBO:0070686"}


id: PBO:0117430
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zDHHC palmitoyltransferase 21","termid":"PBO:0117430"}


id: PBO:0048202
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gamma-aminobutyric acid type A receptor subunit alpha6","termid":"PBO:0048202"}


id: MONDO:0100451
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A ciliopathy caused by biallelic variants in the CEP290 gene.","direct_ancestors":[{"relation_name":"is_a","term_name":"ciliopathy","termid":"MONDO:0005308"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CEP290-related ciliopathy","synonyms":[{"name":"BBS14","type":"narrow"},{"name":"Bardet-Biedl syndrome 14","type":"narrow"},{"name":"Bardet-Biedl syndrome type 14","type":"narrow"},{"name":"CEP290 Joubert syndrome","type":"narrow"},{"name":"CEP290 Leber congenital amaurosis","type":"narrow"},{"name":"CEP290 Meckel syndrome","type":"narrow"},{"name":"CEP290 Senior-Loken syndrome","type":"narrow"},{"name":"CEP290 ciliopathy","type":"exact"},{"name":"JBTS5","type":"narrow"},{"name":"Joubert syndrome 5","type":"narrow"},{"name":"Joubert syndrome caused by mutation in CEP290","type":"narrow"},{"name":"Joubert syndrome type 5","type":"narrow"},{"name":"LCA10","type":"narrow"},{"name":"Leber congenital amaurosis 10","type":"narrow"},{"name":"Leber congenital amaurosis caused by mutation in CEP290","type":"narrow"},{"name":"Leber congenital amaurosis type 10","type":"narrow"},{"name":"MKS4","type":"narrow"},{"name":"Meckel syndrome 4","type":"narrow"},{"name":"Meckel syndrome caused by mutation in CEP290","type":"narrow"},{"name":"Meckel syndrome, type 4","type":"narrow"},{"name":"Meckel-Gruber syndrome, type 4","type":"narrow"},{"name":"Meckel-like Cerebrorenodigital syndrome","type":"narrow"},{"name":"SENIOR-Loken syndrome 6","type":"narrow"},{"name":"SLSN6","type":"narrow"},{"name":"Senior-Loken syndrome 6","type":"narrow"},{"name":"Senior-Loken syndrome caused by mutation in CEP290","type":"narrow"},{"name":"Senior-Loken syndrome type 6","type":"narrow"},{"name":"amaurosis congenita of Leber, type 10","type":"narrow"}],"termid":"MONDO:0100451","xrefs":{"Monarch":{"xref_id":"0100451"}}}


id: PBO:0027844
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_mitotic_G2_DNA_damage_checkpoint","termid":"PBO:0027844"}


id: MONDO:0042902
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Say-Carpenter syndrome (obsolete MONDO:0042902)","termid":"MONDO:0042902","xrefs":{"Monarch":{"xref_id":"0042902"}}}


id: PBO:0041319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 2 open reading frame 69 pseudogene 5","termid":"PBO:0041319"}


id: MONDO:1012107
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hyperkinesis, non-human animal","termid":"MONDO:1011626"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyperkinesis, dog","secondary_identifiers":["OMIA:000503-9615"],"termid":"MONDO:1012107","xrefs":{"Monarch":{"xref_id":"1012107"}}}


id: PBO:0116682
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARF like GTPase 13B","termid":"PBO:0116682"}


id: GO:0034554
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 3,3',5-tribromobisphenol A + 2 H+ + 2 e- = 3,3'-dibromobisphenol A + HBr.","definition_xrefs":["UM-BBD_reactionID:r0842"],"gene_count":0,"genotype_count":0,"name":"obsolete 3,3',5-tribromobisphenol A reductive dehalogenase activity (obsolete GO:0034554)","termid":"GO:0034554"}


id: PR:000044735
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A cell division control protein 12 (Schizosaccharomyces pombe) that has been phosphorylated on residues equivalent to Thr-20, Thr-22, Ser-64, Thr-95, Thr-151 and Ser-463 of the amino acid sequence represented by UniProtKB:Q10059. Example: UniProtKB:Q10059, Thr-20/Thr-22/Thr-95/Thr-151, MOD:00047|Ser-64/Ser-463, MOD:00046.","definition_xrefs":["PMID:29343550","PRO:DAN","PomBase:VW"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell division control protein 12 (Schizosaccharomyces pombe)","termid":"PR:000044734"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cdc12/Phos(T20,T22,S64,T95,T151,S463)","pombase_gene_id":"SPAC1F5.04c","synonyms":[{"name":"PomBase_original_PRO_term_name: cell division control protein 12 phosphorylated 1 (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-cdc12/Phos:1","type":"exact"},{"name":"UniProtKB:Q10059, Thr-20/Thr-22/Thr-95/Thr-151, MOD:00047|Ser-64/Ser-463, MOD:00046","type":"narrow"},{"name":"cdc12/Phos(T20,T22,S64,T95,T151,S463)","type":"exact"}],"termid":"PR:000044735"}


id: MONDO:0043101
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hypothalamic dysfunction refers to a condition in which the hypothalamus is not working properly. The hypothalamus produces hormones that control body temperature, hunger, moods, release of hormones from many glands such as the pituitary gland, sex drive, sleep, and thirst. The signs and symptoms patients have vary depending on the hormones missing. A number of different causes including anorexia, bleeding, genetic disorder, tumors, and more have been linked to hypothalamic dysfunction. Treatment depends on the cause of the hypothalamic dysfunction.","definition_xrefs":["GARD:0002932"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hypothalamic disorder","termid":"MONDO:0002150"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypothalamic dysfunction","secondary_identifiers":["MEDGEN:155833","SCTID:111568001","UMLS:C0751230"],"synonyms":[{"name":"hypothalamic dysfunction","type":"exact"},{"name":"hypothalamic syndrome","type":"exact"}],"termid":"MONDO:0043101","xrefs":{"Monarch":{"xref_id":"0043101"}}}


id: MONDO:0010797
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pearson syndrome is characterized by refractory sideroblastic anemia, vacuolization of bone marrow precursors and exocrine pancreatic dysfunction.","definition_xrefs":["Orphanet:699"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"constitutional neutropenia","termid":"MONDO:0015134"},{"relation_name":"excluded_subClassOf","term_name":"obsolete metabolic disorder with intestinal involvement (obsolete MONDO:0015188)","termid":"MONDO:0015188"},{"relation_name":"excluded_subClassOf","term_name":"obsolete syndrome with hypoparathyroidism (obsolete MONDO:0015895)","termid":"MONDO:0015895"},{"relation_name":"excluded_subClassOf","term_name":"obsolete mitochondrial oxidative phosphorylation disorder due to a large-scale single deletion of mitochondrial DNA (obsolete MONDO:0016792)","termid":"MONDO:0016792"},{"relation_name":"excluded_subClassOf","term_name":"inherited sideroblastic anemia","termid":"MONDO:0020099"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pearson syndrome","secondary_identifiers":["UMLS:C0342784","GARD:7343","icd11.foundation:452521132","MEDGEN:87459","NCIT:C115326","ICD9:277.87","MedDRA:10062941","DOID:0060067","OMIM:557000","SCTID:237985009"],"synonyms":[{"name":"Pearson marrow-pancreas syndrome","type":"exact"},{"name":"Pearson's marrow/pancreas syndrome","type":"related"},{"name":"Pearson's syndrome","type":"related"},{"name":"sideroblastic Anaemia with marrow cell vacuolization and exocrine pancreatic dysfunction","type":"related"},{"name":"sideroblastic Anemia with marrow cell vacuolization and exocrine pancreatic dysfunction","type":"related"},{"name":"sideroblastic anaemia with marrow cell vacuolization and exocrine pancreatic dysfunction (formerly)","type":"related"},{"name":"sideroblastic anemia with marrow cell vacuolization and exocrine pancreatic dysfunction (formerly)","type":"related"}],"termid":"MONDO:0010797","xrefs":{"Monarch":{"xref_id":"0010797"}}}


id: PBO:0074884
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 62B","termid":"PBO:0074884"}


id: GO:1901679
data:
  {"annotated_genes":["SJAG_03334","SJAG_00612","SJAG_03503","SJAG_04328","SJAG_00760","SJAG_00154","SJAG_02050"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[63927],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903790"},{"annotations":[101679],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990554"},{"annotations":[101680],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990553"},{"annotations":[58908],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140021"},{"annotations":[103175,58907],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990544"},{"annotations":[107879],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990548"},{"annotations":[93230],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990549"},{"annotations":[79538],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990519"}]},"cv_name":"biological_process","definition":"The directed movement of nucleotide across a membrane.","definition_xrefs":["GOC:pr","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide transport","termid":"GO:0006862"},{"relation_name":"is_a","term_name":"transmembrane transport","termid":"GO:0055085"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00154":null,"SJAG_00612":null,"SJAG_00760":null,"SJAG_02050":null,"SJAG_03334":null,"SJAG_03503":null,"SJAG_04328":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"nucleotide transmembrane transport","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"nucleotide membrane transport","type":"exact"}],"termid":"GO:1901679","terms_by_termid":{"GO:0140021":null,"GO:1903790":null,"GO:1990519":null,"GO:1990544":null,"GO:1990548":null,"GO:1990549":null,"GO:1990553":null,"GO:1990554":null}}


id: MONDO:0100183
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A susceptibility or predisposition to radioulnar synostosis in which the cause of the disease is a mutation in the SMAD6 gene.","definition_xrefs":["MONDO:patterns/susceptibility_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"radioulnar synostosis, nonsyndromic, susceptibility to","secondary_identifiers":["MEDGEN:1712799","UMLS:C5241445","OMIM:179300"],"termid":"MONDO:0100183","xrefs":{"Monarch":{"xref_id":"0100183"}}}


id: GO:0019321
data:
  {"annotated_genes":["SJAG_03174","SJAG_04660","SJAG_04276","SJAG_02010","SJAG_03958","SJAG_00070"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[101504,95345,96074],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019568"},{"annotations":[58624],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019303"},{"annotations":[74859],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006014"},{"annotations":[95347,96075,101505],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042843"},{"annotations":[65962],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042732"},{"annotations":[119356],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005998"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving a pentose, any monosaccharide with a chain of five carbon atoms in the molecule.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monosaccharide metabolic process","termid":"GO:0005996"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00070":null,"SJAG_02010":null,"SJAG_03174":null,"SJAG_03958":null,"SJAG_04276":null,"SJAG_04660":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0044281","GO:0005975","GO:0008150"],"is_obsolete":false,"name":"pentose metabolic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null},"synonyms":[{"name":"pentose metabolism","type":"exact"}],"termid":"GO:0019321","terms_by_termid":{"GO:0005998":null,"GO:0006014":null,"GO:0019303":null,"GO:0019568":null,"GO:0042732":null,"GO:0042843":null}}


id: FYPO:0001214
data:
  {"alleles_by_uniquename":{"SJAG_04312:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04312","name":"pka1delta","uniquename":"SJAG_04312:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[119898],"is_not":false,"summary":null,"term":"FYPO:0001214"}]},"cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to potassium chloride. Cells stop growing (and may die) at a concentration of potassium chloride that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04312":null},"genotype_count":1,"genotypes_by_uniquename":{"pka1delta":{"display_name":"pka1delta","display_uniquename":"pka1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04312:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002683"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0002683","FYPO:0005447","FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to potassium chloride","references_by_uniquename":{"PMID:27678009":null},"single_locus_annotated_genes":["SJAG_04312"],"single_locus_genotype_uniquenames":["pka1delta"],"synonyms":[{"name":"hypersensitive to potassium chloride","type":"exact"},{"name":"sensitive to KCl","type":"exact"},{"name":"sensitive to potassium chloride during mitotic cell cycle","type":"related"},{"name":"sensitive to potassium chloride during vegetative growth","type":"exact"}],"termid":"FYPO:0001214","terms_by_termid":{"FYPO:0001214":null}}


id: PBO:0017663
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SEA complex subunit, human WDR24 family, Sea2 (predicted)","termid":"PBO:0017663"}


id: PBO:0035969
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_histone_H4-K20_methylation_during_vegetative_growth","termid":"PBO:0035969"}


id: PATO:0002225
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of the letter L.","definition_xrefs":["PATOC:JE"],"direct_ancestors":[{"relation_name":"is_a","term_name":"angular","termid":"PATO:0001977"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-shaped","termid":"PATO:0002225"}


id: PBO:0070466
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L5 pseudogene 1","termid":"PBO:0070466"}


id: PBO:0054949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2363","termid":"PBO:0054949"}


id: PBO:0113057
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of KEOPS complex with Kae1p, Cgi121p, Pcc1p, and Gon7p; provides the ATPase and GTPase activities of the complex; EKC/KEOPS complex is required for t6A tRNA modification and telomeric TG1-3 recombination; may have role in transcription; mutation is functionally complemented by human ortholog TP53RK","termid":"PBO:0113057"}


id: GO:0051280
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the release into the cytosolic compartment of calcium ions sequestered in the endoplasmic reticulum or mitochondria.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of release of sequestered calcium ion into cytosol","termid":"GO:0051279"},{"relation_name":"is_a","term_name":"positive regulation of sequestering of calcium ion","termid":"GO:0051284"},{"relation_name":"is_a","term_name":"negative regulation of calcium ion transmembrane transport","termid":"GO:1903170"},{"relation_name":"negatively_regulates","term_name":"release of sequestered calcium ion into cytosol","termid":"GO:0051209"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0055085"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"negative regulation of release of sequestered calcium ion into cytosol","synonyms":[{"name":"down regulation of release of sequestered calcium ion into cytosol","type":"exact"},{"name":"down-regulation of release of sequestered calcium ion into cytosol","type":"exact"},{"name":"downregulation of release of sequestered calcium ion into cytosol","type":"exact"},{"name":"inhibition of release of sequestered calcium ion into cytosol","type":"narrow"},{"name":"negative regulation of calcium ion (Ca2+) mobilization","type":"broad"},{"name":"negative regulation of calcium mobilization","type":"broad"},{"name":"negative regulation of cytoplasmic release of sequestered calcium ion (Ca2+)","type":"broad"},{"name":"negative regulation of cytoplasmic release of stored calcium ion (Ca2+)","type":"broad"},{"name":"negative regulation of cytosolic release of sequestered calcium ion (Ca2+)","type":"exact"},{"name":"negative regulation of cytosolic release of stored calcium ion (Ca2+)","type":"exact"},{"name":"negative regulation of release of sequestered calcium ion (Ca2+)","type":"broad"},{"name":"negative regulation of release of sequestered calcium ion into cytoplasm","type":"broad"},{"name":"negative regulation of release of stored calcium ion (Ca2+)","type":"broad"},{"name":"negative regulation of release of stored calcium ion (Ca2+) into cytoplasm","type":"broad"},{"name":"negative regulation of release of stored calcium ion (Ca2+) into cytosol","type":"exact"}],"termid":"GO:0051280"}


id: GO:0090655
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a junction formed at the point where double-stranded telomeric DNA becomes a single-stranded G-rich telomeric DNA 3' overhang.","definition_xrefs":["GOC:BHF","GOC:nc","PMID:21852327","GOC:BHF_telomere","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"double-strand/single-strand DNA junction binding","termid":"GO:0000406"},{"relation_name":"is_a","term_name":"telomeric DNA binding","termid":"GO:0042162"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003677"}],"interesting_parent_ids":["GO:0003677","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"double-stranded/single-stranded junction telomeric DNA binding","termid":"GO:0090655"}


id: GO:0033271
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of any phosphorylated myo-inositol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organophosphate ester transport","termid":"GO:0015748"},{"relation_name":"is_a","term_name":"organic hydroxy compound transport","termid":"GO:0015850"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"myo-inositol phosphate transport","secondary_identifiers":["Reactome:R-HSA-1855192","Reactome:R-HSA-1855196","Reactome:R-HSA-1855156","Reactome:R-HSA-1855170","Reactome:R-HSA-1855184","Reactome:R-HSA-1855229","Reactome:R-HSA-1855215"],"termid":"GO:0033271"}


id: GO:0033026
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of mast cell apoptotic process.","definition_xrefs":["GOC:mtg_apoptosis","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of immune system process","termid":"GO:0002683"},{"relation_name":"is_a","term_name":"regulation of mast cell apoptotic process","termid":"GO:0033025"},{"relation_name":"is_a","term_name":"negative regulation of myeloid cell apoptotic process","termid":"GO:0033033"},{"relation_name":"is_a","term_name":"negative regulation of leukocyte apoptotic process","termid":"GO:2000107"},{"relation_name":"negatively_regulates","term_name":"mast cell apoptotic process","termid":"GO:0033024"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of mast cell apoptotic process","synonyms":[{"name":"down regulation of mast cell apoptosis","type":"exact"},{"name":"down-regulation of mast cell apoptosis","type":"exact"},{"name":"downregulation of mast cell apoptosis","type":"exact"},{"name":"inhibition of mast cell apoptosis","type":"narrow"},{"name":"negative regulation of mast cell apoptosis","type":"narrow"}],"termid":"GO:0033026"}


id: PBO:0002682
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"box H/ACA snoRNP complex subunit Nhp2","termid":"PBO:0002682"}


id: GO:0005540
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to hyaluronic acid, a polymer composed of repeating dimeric units of glucuronic acid and N-acetyl glucosamine.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycosaminoglycan binding","termid":"GO:0005539"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"hyaluronic acid binding","synonyms":[{"name":"hyaluronan binding","type":"exact"}],"termid":"GO:0005540"}


id: MONDO:0003631
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare adenocarcinoma that arises from the cervix. It is characterized by the presence of papillary patterns and cellular budding. Psammoma bodies are often seen.","definition_xrefs":["NCIT:C40201"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cervical adenocarcinoma","termid":"MONDO:0005153"},{"relation_name":"is_a","term_name":"serous adenocarcinoma","termid":"MONDO:0005278"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"cervical serous adenocarcinoma","secondary_identifiers":["MEDGEN:308950","UMLS:C1516431","DOID:5752"],"synonyms":[{"name":"cervical serous adenocarcinoma","type":"exact"}],"termid":"MONDO:0003631","xrefs":{"Monarch":{"xref_id":"0003631"}}}


id: GO:0102249
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a phosphatidylcholine + a 1,2-diacyl-sn-glycerol = a 1,2-diacyl-sn-glycerol + a phosphatidylcholine.","definition_xrefs":["MetaCyc:RXN-12386","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, for other substituted phosphate groups","termid":"GO:0016780"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016780"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0016780","GO:0003674"],"is_obsolete":false,"name":"phosphatidylcholine:diacylglycerol cholinephosphotransferase activity","termid":"GO:0102249"}


id: FYECO:0000439
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which glycerophosphocholine was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping defined medium","termid":"FYECO:0000013"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ glycerophosphocholine","secondary_identifiers":["PMID:38133430"],"termid":"FYECO:0000439"}


id: PBO:0084071
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase required for ribosomal subunit synthesis and rRNA processing; required for synthesis of 40S ribosomal subunits and for processing the 35S pre-rRNA at sites A0, A1, and A2; interacts with Rcl1p, which stimulates its GTPase and U3 snoRNA binding activities; has similarity to Tsr1p","termid":"PBO:0084071"}


id: GO:0033779
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 5beta-cholestane-3alpha,7alpha-diol + H+ + NADPH + O2 = 5beta-cholestane-3alpha,7alpha,12alpha-triol + H2O + NADP+.","definition_xrefs":["GOC:curator"],"gene_count":0,"genotype_count":0,"name":"obsolete 5-beta-cholestane-3-alpha,7-alpha-diol 12-alpha-hydroxylase activity (obsolete GO:0033779)","termid":"GO:0033779"}


id: PBO:0000752
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.1.1.29","termid":"PBO:0000752"}


id: PBO:0002849
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"halotolerence protein 4","termid":"PBO:0002849"}


id: PBO:0077776
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TOMM40 pseudogene 3","termid":"PBO:0077776"}


id: MONDO:0013355
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital dyserythropoietic anemia type IV (CDA IV) is a newly discovered form of CDA characterized by ineffective erythropoiesis and hemolysis that leads to severe anemia at birth.","definition_xrefs":["Orphanet:293825"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital anemia","termid":"MONDO:0000577"},{"relation_name":"is_a","term_name":"congenital dyserythropoietic anemia","termid":"MONDO:0019403"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0002280"}],"interesting_parent_ids":["MONDO:0002280","MONDO:0005570"],"is_obsolete":false,"name":"congenital dyserythropoietic anemia type 4","secondary_identifiers":["UMLS:C3150926","OMIM:613673","DOID:0111400","GARD:17344","SCTID:719453009","MEDGEN:462276"],"synonyms":[{"name":"CDA IV","type":"exact"},{"name":"CDA due to KLF1 mutation","type":"exact"},{"name":"CDA type 4","type":"exact"},{"name":"CDA type IV","type":"exact"},{"name":"CDA, type 4","type":"related"},{"name":"CDAN4","type":"exact"},{"name":"anemia, congenital dyserythropoietic, type 4","type":"related"},{"name":"anemia, congenital dyserythropoietic, type IV","type":"related"},{"name":"congenital dyserythropoietic anaemia due to KLF1 mutation","type":"exact"},{"name":"congenital dyserythropoietic anemia due to KLF1 mutation","type":"exact"},{"name":"congenital dyserythropoietic anemia type 4","type":"exact"},{"name":"dyserythropoietic anemia, congenital, type IV","type":"exact"}],"termid":"MONDO:0013355","xrefs":{"Monarch":{"xref_id":"0013355"}}}


id: FYPO:0001010
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cytokinesis phenotype observed in the vegetative growth phase of the life cycle in which the assembly and distribution of cytoskeletal structures comprising actin filaments does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_output","term_name":"filamentous actin absent","termid":"FYPO:0001011"},{"relation_name":"is_a","term_name":"abnormal actin filament organization during vegetative growth","termid":"FYPO:0000727"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0004803","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abolished actin filament organization","synonyms":[{"name":"abolished actin filament organisation","type":"exact"},{"name":"abolished actin filament organization during mitotic cell cycle","type":"related"},{"name":"abolished actin filament organization during vegetative growth","type":"exact"},{"name":"actin filament organization abolished","type":"exact"}],"termid":"FYPO:0001010"}


id: GO:0033414
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A triplet codon-amino acid adaptor activity that recognizes a UGC codon.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"triplet codon-amino acid adaptor activity","termid":"GO:0030533"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0060090","GO:0003723","GO:0005488"],"is_obsolete":false,"name":"UGC codon-amino acid adaptor activity","synonyms":[{"name":"TGC codon-amino acid adaptor activity","type":"exact"},{"name":"cysteine tRNA","type":"related"}],"termid":"GO:0033414"}


id: GO:0007316
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which RNA is transported to, or maintained in, the oocyte pole plasm. An example of this is found in Drosophila melanogaster.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA localization","termid":"GO:0006403"},{"relation_name":"part_of","term_name":"pole plasm assembly","termid":"GO:0007315"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"pole plasm RNA localization","secondary_identifiers":["GO:0048116"],"synonyms":[{"name":"establishment and maintenance of pole plasm RNA localization","type":"exact"},{"name":"oocyte pole plasm RNA localization","type":"exact"},{"name":"pole plasm RNA localisation","type":"exact"}],"termid":"GO:0007316"}


id: GO:0032225
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of dopaminergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter dopamine.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation of chemical synaptic transmission","termid":"GO:0050804"},{"relation_name":"regulates","term_name":"synaptic transmission, dopaminergic","termid":"GO:0001963"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of synaptic transmission, dopaminergic","termid":"GO:0032225"}


id: FYPO:0003178
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the organization and subsequent separation of sister chromatids during the second meiotic nuclear division is normal (i.e. indistinguishable from wild type) during meiosis.","definition_xrefs":["GO:0045144","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal meiotic chromosome segregation","termid":"FYPO:0003176"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal meiotic sister chromatid segregation","synonyms":[{"name":"normal chromosome disjunction at meiosis II","type":"exact"},{"name":"normal sister chromatid segregation during meiosis","type":"exact"}],"termid":"FYPO:0003178"}


id: PBO:0089713
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA recombination protein Dbl2","termid":"PBO:0089713"}


id: PBO:0013042
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear exosome-associated RNA binding protein Mpp6","termid":"PBO:0013042"}


id: MONDO:0006701
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An epithelial neoplasm of the anterior pituitary gland in which the neoplastic cells do not stain with acidic or basic dyes.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pituitary gland adenoma","termid":"MONDO:0006373"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromophobe adenoma","secondary_identifiers":["ICDO:8270/0","NCIT:C2857","EFO:1000867","MESH:D000238","MEDGEN:1747","UMLS:C0001432","DOID:3828"],"synonyms":[{"name":"chromophobe adenoma of pituitary gland","type":"exact"},{"name":"chromophobe adenoma of the pituitary gland","type":"exact"},{"name":"pituitary chromophobe adenoma","type":"exact"},{"name":"pituitary gland chromophobe adenoma","type":"exact"}],"termid":"MONDO:0006701","xrefs":{"Monarch":{"xref_id":"0006701"}}}


id: GO:0052419
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways performed by an organism in its symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete metabolism by host of substance in symbiont (obsolete GO:0052419)","termid":"GO:0052419"}


id: PBO:0002610
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deoxyhypusine hydroxylase (predicted)","termid":"PBO:0002610"}


id: MONDO:0006937
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Inflammation of the dental pulp.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dental pulp disorder","termid":"MONDO:0003394"},{"relation_name":"is_a","term_name":"bacterial infectious disease","termid":"MONDO:0005113"},{"relation_name":"is_a","term_name":"inflammatory disease","termid":"MONDO:0021166"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pulpitis","secondary_identifiers":["MESH:D011671","SCTID:32620007","ICD10CM:K04.0","MedDRA:10037463","MEDGEN:19580","ICD9:522.0","UMLS:C0034103","DOID:11121","EFO:1001139","icd11.foundation:576344431"],"synonyms":[{"name":"dental pulp inflammation","type":"exact"},{"name":"inflammation of dental pulp","type":"exact"}],"termid":"MONDO:0006937","xrefs":{"Monarch":{"xref_id":"0006937"}}}


id: GO:0051549
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of keratinocyte migration.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of epithelial cell migration","termid":"GO:0010634"},{"relation_name":"is_a","term_name":"regulation of keratinocyte migration","termid":"GO:0051547"},{"relation_name":"positively_regulates","term_name":"keratinocyte migration","termid":"GO:0051546"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of keratinocyte migration","synonyms":[{"name":"activation of keratinocyte migration","type":"narrow"},{"name":"stimulation of keratinocyte migration","type":"narrow"},{"name":"up regulation of keratinocyte migration","type":"exact"},{"name":"up-regulation of keratinocyte migration","type":"exact"},{"name":"upregulation of keratinocyte migration","type":"exact"}],"termid":"GO:0051549"}


id: PBO:0073619
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sialic acid binding Ig like lectin 5","termid":"PBO:0073619"}


id: PBO:0068241
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 18S ribosomal pseudogene 3","termid":"PBO:0068241"}


id: PBO:0004632
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit S4 (predicted)","termid":"PBO:0004632"}


id: GO:0002410
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The movement of a plasmacytoid dendritic cell in response to an external stimulus.","definition_xrefs":["GOC:add","PMID:15159375","PMID:15814331"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dendritic cell chemotaxis","termid":"GO:0002407"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"plasmacytoid dendritic cell chemotaxis","termid":"GO:0002410"}


id: GO:0030778
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + columbamine = S-adenosyl-L-homocysteine + H+ + palmatine.","definition_xrefs":["EC:2.1.1.118","RHEA:15373"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016741","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"columbamine O-methyltransferase activity","secondary_identifiers":["MetaCyc:2.1.1.118-RXN","KEGG_REACTION:R03721"],"synonyms":[{"name":"S-adenosyl-L-methionine:columbamine O-methyltransferase activity","type":"related"}],"termid":"GO:0030778"}


id: MONDO:0030974
data:
  {"annotated_genes":["SJAG_00260"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85885],"is_not":false,"summary":null,"term":"MONDO:0030974"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial complex II deficiency, nuclear type","termid":"MONDO:0031230"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00260":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004069","MONDO:0005336"],"is_obsolete":false,"name":"mitochondrial complex 2 deficiency, nuclear type 4","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:619224","GARD:16438","UMLS:C5543176","MEDGEN:1782861"],"synonyms":[{"name":"MC2DN4","type":"exact"},{"name":"mitochondrial complex 2 deficiency, nuclear type 4","type":"exact"},{"name":"mitochondrial complex II deficiency, nuclear type 4","type":"exact"}],"termid":"MONDO:0030974","terms_by_termid":{"MONDO:0030974":null},"xrefs":{"Monarch":{"xref_id":"0030974"}}}


id: MONDO:0014719
data:
  {"annotated_genes":["SJAG_03797"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86339],"is_not":false,"summary":null,"term":"MONDO:0014719"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inborn disorder of purine metabolism","termid":"MONDO:0019236"},{"relation_name":"is_a","term_name":"inherited neurodegenerative disorder","termid":"MONDO:0024237"},{"relation_name":"is_a","term_name":"developmental and epileptic encephalopathy","termid":"MONDO:0100062"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03797":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0019254"},{"rel_name":"is_a","termid":"MONDO:0005027"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0019254","MONDO:0005027","MONDO:0700092","MONDO:0005066"],"is_obsolete":false,"name":"developmental and epileptic encephalopathy, 35","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:616647","Orphanet:457375","GARD:17806","UMLS:C4225256","DOID:0080458","MEDGEN:904159"],"synonyms":[{"name":"DEE35","type":"exact"},{"name":"EIEE35","type":"exact"},{"name":"ITPA-related encephalopathy","type":"exact"},{"name":"developmental and epileptic encephalopathy 35","type":"exact"},{"name":"epileptic encephalopathy, early infantile, 35","type":"exact"},{"name":"epileptic encephalopathy, early infantile, type 35","type":"exact"}],"termid":"MONDO:0014719","terms_by_termid":{"MONDO:0014719":null},"xrefs":{"Monarch":{"xref_id":"0014719"}}}


id: GO:0016329
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. The function held by products which directly regulate any step in the process of apoptosis.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete apoptosis regulator activity (obsolete GO:0016329)","synonyms":[{"name":"apoptosis regulator activity","type":"exact"}],"termid":"GO:0016329"}


id: GO:0002719
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of cytokine production contributing to an immune response.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokine production","termid":"GO:0001818"},{"relation_name":"is_a","term_name":"negative regulation of production of molecular mediator of immune response","termid":"GO:0002701"},{"relation_name":"is_a","term_name":"regulation of cytokine production involved in immune response","termid":"GO:0002718"},{"relation_name":"negatively_regulates","term_name":"cytokine production involved in immune response","termid":"GO:0002367"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of cytokine production involved in immune response","secondary_identifiers":["GO:0002740","GO:0002743"],"synonyms":[{"name":"down regulation of cytokine production during immune response","type":"related"},{"name":"down-regulation of cytokine production during immune response","type":"exact"},{"name":"downregulation of cytokine production during immune response","type":"related"},{"name":"inhibition of cytokine production during immune response","type":"related"},{"name":"negative regulation of cytokine biosynthetic process involved in immune response","type":"narrow"},{"name":"negative regulation of cytokine production during immune response","type":"related"},{"name":"negative regulation of cytokine secretion involved in immune response","type":"narrow"}],"termid":"GO:0002719"}


id: PBO:0081965
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZPR1 zinc finger","termid":"PBO:0081965"}


id: PBO:0054476
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1876","termid":"PBO:0054476"}


id: GO:1900973
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of sarcinapterin biosynthetic process.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of biosynthetic process","termid":"GO:0009891"},{"relation_name":"is_a","term_name":"positive regulation of sarcinapterin metabolic process","termid":"GO:1900970"},{"relation_name":"is_a","term_name":"regulation of sarcinapterin biosynthetic process","termid":"GO:1900971"},{"relation_name":"positively_regulates","term_name":"sarcinapterin biosynthetic process","termid":"GO:1900868"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0042559"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"positively_regulates","termid":"GO:0042559"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0042559","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"positive regulation of sarcinapterin biosynthetic process","synonyms":[{"name":"activation of sarcinapterin anabolism","type":"exact"},{"name":"activation of sarcinapterin biosynthesis","type":"exact"},{"name":"activation of sarcinapterin biosynthetic process","type":"narrow"},{"name":"activation of sarcinapterin formation","type":"exact"},{"name":"activation of sarcinapterin synthesis","type":"exact"},{"name":"positive regulation of sarcinapterin anabolism","type":"exact"},{"name":"positive regulation of sarcinapterin biosynthesis","type":"exact"},{"name":"positive regulation of sarcinapterin formation","type":"exact"},{"name":"positive regulation of sarcinapterin synthesis","type":"exact"},{"name":"up regulation of sarcinapterin anabolism","type":"exact"},{"name":"up regulation of sarcinapterin biosynthesis","type":"exact"},{"name":"up regulation of sarcinapterin biosynthetic process","type":"exact"},{"name":"up regulation of sarcinapterin formation","type":"exact"},{"name":"up regulation of sarcinapterin synthesis","type":"exact"},{"name":"up-regulation of sarcinapterin anabolism","type":"exact"},{"name":"up-regulation of sarcinapterin biosynthesis","type":"exact"},{"name":"up-regulation of sarcinapterin biosynthetic process","type":"exact"},{"name":"up-regulation of sarcinapterin formation","type":"exact"},{"name":"up-regulation of sarcinapterin synthesis","type":"exact"},{"name":"upregulation of sarcinapterin anabolism","type":"exact"},{"name":"upregulation of sarcinapterin biosynthesis","type":"exact"},{"name":"upregulation of sarcinapterin biosynthetic process","type":"exact"},{"name":"upregulation of sarcinapterin formation","type":"exact"},{"name":"upregulation of sarcinapterin synthesis","type":"exact"}],"termid":"GO:1900973"}


id: MONDO:0004184
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disease involving the urethra.","direct_ancestors":[{"relation_name":"is_a","term_name":"urinary system disorder","termid":"MONDO:0002118"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"urethral disorder","secondary_identifiers":["MESH:D014522","UMLS:C0041969","SCTID:4985009","MEDGEN:22569","NCIT:C26903","DOID:732","EFO:0009689"],"synonyms":[{"name":"disease of urethra","type":"exact"},{"name":"disease or disorder of urethra","type":"exact"},{"name":"disorder of urethra","type":"exact"},{"name":"urethra disease","type":"exact"},{"name":"urethra disease or disorder","type":"exact"},{"name":"urethra disorder","type":"exact"}],"termid":"MONDO:0004184","xrefs":{"Monarch":{"xref_id":"0004184"}}}


id: PBO:0087320
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferase; not essential for viability; EPT1 has a paralog, CPT1, that arose from the whole genome duplication","termid":"PBO:0087320"}


id: PR:O43057
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A guanine nucleotide exchange factor MSS4 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR13276:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"guanine nucleotide exchange factor MSS4 homolog (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC4C3.04c","secondary_identifiers":["UniProtKB:O43057"],"synonyms":[{"name":"Spom972h-RABIF","type":"exact"}],"termid":"PR:O43057"}


id: MOD:01420
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that crosslinks two residues by condensation of a cysteine thiol with the carbonyl of the preceding residue to form a thiazole or thiazoline ring.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thioether crosslinked residues","termid":"MOD:00687"},{"relation_name":"is_a","term_name":"oxazole/thiazole ring crosslinked residues","termid":"MOD:00690"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"thiazole/thiazoline ring crosslinked residues","termid":"MOD:01420"}


id: PR:O13651
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An isoleucine--tRNA ligase, cytoplasmic that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02832","PANTHER:PTHR11946:SF11","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"isoleucine--tRNA ligase, cytoplasmic (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC8D2.06","secondary_identifiers":["UniProtKB:O13651"],"synonyms":[{"name":"IleRS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-IARS","type":"exact"},{"name":"isoleucyl-tRNA synthetase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13651"}


id: PBO:0083503
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified ORF APL2/YKL135C","termid":"PBO:0083503"}


id: PBO:0046346
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 4","termid":"PBO:0046346"}


id: PBO:0011403
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"extension_relations_status","termid":"PBO:0011403"}


id: GO:0060205
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The volume enclosed by a cytoplasmic vesicle.","definition_xrefs":["GOC:vesicles","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle lumen","termid":"GO:0031983"},{"relation_name":"is_a","term_name":"intracellular organelle lumen","termid":"GO:0070013"},{"relation_name":"part_of","term_name":"cytoplasmic vesicle","termid":"GO:0031410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0031410","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"cytoplasmic vesicle lumen","synonyms":[{"name":"cytoplasmic membrane-bounded vesicle lumen","type":"related"},{"name":"cytoplasmic membrane-enclosed vesicle lumen","type":"related"}],"termid":"GO:0060205"}


id: FYPO:0005401
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of protein measured in a cell is higher than normal during arrest of the mitotic cell cycle in G1 phase due to nitrogen starvation. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein level during cellular response to nitrogen starvation","termid":"FYPO:0001219"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0006551"],"is_obsolete":false,"name":"increased protein level during mitotic G1 cell cycle arrest in response to nitrogen starvation","synonyms":[{"name":"increased protein accumulation during mitotic G1 cell cycle arrest in response to nitrogen starvation","type":"related"},{"name":"increased protein level during G1 arrest in response to nitrogen starvation","type":"exact"}],"termid":"FYPO:0005401"}


id: GO:0071257
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electrical stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to electrical stimulus","termid":"GO:0051602"},{"relation_name":"is_a","term_name":"cellular response to abiotic stimulus","termid":"GO:0071214"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to electrical stimulus","synonyms":[{"name":"cellular response to electricity","type":"related"}],"termid":"GO:0071257"}


id: PBO:0050286
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H6 family homeobox 3","termid":"PBO:0050286"}


id: FYPO:0005427
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a vegetatively growing cell is elongated, is curved along the long axis to form a \\\"J\\\" shape, and contains cytoplasmic microtubules that curve to follow the long axis of the cell. In a curved cell, the long axis follows a smooth bend rather than a straight line. In a J-shaped cell, the curve is centered away from the midpoint of the long axis of the cell.","definition_xrefs":["PMID:11739790","PomBase:mah","PomBase:vw"],"direct_ancestors":[{"relation_name":"has_part","term_name":"curved interphase microtubules","termid":"FYPO:0003327"},{"relation_name":"has_part","term_name":"J-shaped vegetative cell","termid":"FYPO:0005790"},{"relation_name":"is_a","term_name":"curved interphase microtubules","termid":"FYPO:0003327"},{"relation_name":"is_a","term_name":"curved elongated vegetative cell with long curved interphase microtubules","termid":"FYPO:0005425"},{"relation_name":"is_a","term_name":"J-shaped vegetative cell","termid":"FYPO:0005790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0002399"},{"rel_name":"output_of","termid":"FYPO:0000054"}],"interesting_parent_ids":["FYPO:0000054","FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0002399","FYPO:0001985","FYPO:0000005"],"is_obsolete":false,"name":"elongated J-shaped vegetative cell with curved interphase microtubules","synonyms":[{"name":"curved elongated J-shaped vegetative cell with curved cytoplasmic microtubules","type":"exact"},{"name":"elongated J-shaped cell with curved cytoplasmic microtubules","type":"exact"},{"name":"elongated J-shaped cell with curved interphase microtubules during vegetative growth","type":"exact"},{"name":"elongated J-shaped vegetative cell with curved cytoplasmic microtubules during mitotic interphase","type":"exact"},{"name":"elongated J-shaped vegetative cell with curved interphase cytoplasmic microtubules","type":"exact"},{"name":"elongated J-shaped vegetative cell with curved interphase microtubules during mitotic cell cycle","type":"related"}],"termid":"FYPO:0005427"}


id: PBO:0090513
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glycosyltransferase 34 family","termid":"PBO:0090513"}


id: PBO:0034064
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_ectoparasite","termid":"PBO:0034064"}


id: GO:0046494
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving rhizobactin 1021, (E)-4-((3-(acetylhydroxyamino)propyl)-amino)-2-hydroxy-(2-(2-(3-(hydroxy(1-oxo-2-decenyl)amino)propyl)amino)-2-oxoethyl)-4-oxobutanoic acid, a siderophore produced by Sinorhizobium meliloti.","definition_xrefs":["PMID:11274118"],"direct_ancestors":[{"relation_name":"is_a","term_name":"siderophore metabolic process","termid":"GO:0009237"},{"relation_name":"is_a","term_name":"carboxylic acid metabolic process","termid":"GO:0019752"},{"relation_name":"is_a","term_name":"amide metabolic process","termid":"GO:0043603"},{"relation_name":"is_a","term_name":"tertiary alcohol metabolic process","termid":"GO:1902644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0019748","GO:0008150"],"is_obsolete":false,"name":"rhizobactin 1021 metabolic process","synonyms":[{"name":"rhizobactin 1021 metabolism","type":"exact"}],"termid":"GO:0046494"}


id: GO:0032206
data:
  {"annotated_genes":["SJAG_03624"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97506],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032215"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of a process that affects and monitors the activity of telomeric proteins and the length of telomeric DNA.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of telomere maintenance","termid":"GO:0032204"},{"relation_name":"is_a","term_name":"positive regulation of DNA metabolic process","termid":"GO:0051054"},{"relation_name":"is_a","term_name":"positive regulation of chromosome organization","termid":"GO:2001252"},{"relation_name":"positively_regulates","term_name":"telomere maintenance","termid":"GO:0000723"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03624":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0032200"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0032200"},{"rel_name":"positively_regulates","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0032200","GO:0006259","GO:0008150"],"is_obsolete":false,"name":"positive regulation of telomere maintenance","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of telomere maintenance","type":"narrow"},{"name":"stimulation of telomere maintenance","type":"narrow"},{"name":"up regulation of telomere maintenance","type":"exact"},{"name":"up-regulation of telomere maintenance","type":"exact"},{"name":"upregulation of telomere maintenance","type":"exact"}],"termid":"GO:0032206","terms_by_termid":{"GO:0032215":null}}


id: PBO:0000828
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"haloacid dehalogenase-like hydrolase","termid":"PBO:0000828"}


id: PBO:0031413
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-T-shaped_vegetative_cell","termid":"PBO:0031413"}


id: GO:1901902
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving tyrocidine.","definition_xrefs":["GOC:TermGenie","GOC:yaf","PMID:9352938"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic process","termid":"GO:0008152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"tyrocidine metabolic process","synonyms":[{"name":"tyrocidine metabolism","type":"exact"}],"termid":"GO:1901902"}


id: FYPO:0004310
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle phenotype in which the duration of M phase of the mitotic cell cycle is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal mitotic cell cycle phase","termid":"FYPO:0002740"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001312","FYPO:0000257"],"is_obsolete":false,"name":"normal duration of mitotic M phase","secondary_identifiers":["FYPO:0005632"],"synonyms":[{"name":"normal duration of M phase of mitotic cell cycle","type":"exact"},{"name":"normal duration of mitosis","type":"related"},{"name":"normal duration of mitosis during vegetative growth","type":"related"},{"name":"normal duration of mitotic division","type":"related"},{"name":"normal duration of mitotic nuclear division","type":"related"}],"termid":"FYPO:0004310"}


id: PBO:0114321
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"repeat region consensus DSESESSSEDSDSSSSSS ~7 copies","termid":"PBO:0114321"}


id: GO:0006933
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The disassembly of adhesions at the front and rear of a migrating cell. At the leading edge, adhesion disassembly accompanies the formation of new protrusions; at the cell rear, it promotes tail retraction.","definition_xrefs":["GOC:tb","PMID:14657486","PMID:11944043","GOC:dph","ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell adhesion","termid":"GO:0007162"},{"relation_name":"part_of","term_name":"substrate-dependent cell migration","termid":"GO:0006929"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"negative regulation of cell adhesion involved in substrate-bound cell migration","synonyms":[{"name":"substrate-bound cell migration, cell release from substrate","type":"exact"}],"termid":"GO:0006933"}


id: MONDO:1012423
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"vitamin D-deficiency rickets, non-type I, non-type II, non-human animal","termid":"MONDO:1011962"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vitamin D-deficiency rickets, non-type I, non-type II, domestic cat","secondary_identifiers":["OMIA:001614-9685"],"termid":"MONDO:1012423","xrefs":{"Monarch":{"xref_id":"1012423"}}}


id: PBO:0076584
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBC1D8 antisense RNA 1","termid":"PBO:0076584"}


id: PBO:0034665
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-thin_stable_microtubule_bundle","termid":"PBO:0034665"}


id: PBO:0090895
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation initiation factor eIF4A tif1","termid":"PBO:0090895"}


id: SO:0001181
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A cis-acting element found in the 3' UTR of some mRNA which is bound by the Drosophila Bruno protein and its homologs.","definition_xrefs":["PMID:10893231"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UTR_region","termid":"SO:0000837"},{"relation_name":"part_of","term_name":"three_prime_UTR","termid":"SO:0000205"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Bruno_response_element","synonyms":[{"name":"BRE","type":"related"},{"name":"Bruno response element","type":"exact"}],"termid":"SO:0001181"}


id: PBO:0059372
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MRPS18C pseudogene 5","termid":"PBO:0059372"}


id: PBO:0052921
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 19-4","termid":"PBO:0052921"}


id: GO:0018707
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 1-phenanthrol + X-CH3 = X + 1-methoxyphenanthrene.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 1-phenanthrol methyltransferase activity (obsolete GO:0018707)","termid":"GO:0018707"}


id: GO:0031023
data:
  {"annotated_genes":["SJAG_01805","SJAG_04558","SJAG_00719","SJAG_00773","SJAG_03052","SJAG_02529","SJAG_03200","SJAG_03544","SJAG_04901","SJAG_03264","SJAG_02795","SJAG_03915","SJAG_04003","SJAG_04781","SJAG_00594","SJAG_01760","SJAG_02651","SJAG_00794","SJAG_04745"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104864,105193],"is_not":false,"summary":null,"term":"GO:0031023"},{"annotations":[102643],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031025"},{"annotations":[95633],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0140456"},{"annotations":[78167,95634,76095],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000073"},{"annotations":[102644,113097],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031024"},{"annotations":[94123,115455],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990395"},{"annotations":[112970,107747,113172,90454,115456],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903087"},{"annotations":[98597],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905047"},{"annotations":[91620,114261,97194],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1902441"},{"annotations":[95697,89969],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051300"}]},"cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a microtubule organizing center, a structure from which microtubules grow.","definition_xrefs":["GOC:dph","GOC:jl","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubule-based process","termid":"GO:0007017"},{"relation_name":"is_a","term_name":"cellular component organization","termid":"GO:0016043"},{"relation_name":"part_of","term_name":"microtubule cytoskeleton organization","termid":"GO:0000226"}],"gene_count":19,"genes_by_uniquename":{"SJAG_00594":null,"SJAG_00719":null,"SJAG_00773":null,"SJAG_00794":null,"SJAG_01760":null,"SJAG_01805":null,"SJAG_02529":null,"SJAG_02651":null,"SJAG_02795":null,"SJAG_03052":null,"SJAG_03200":null,"SJAG_03264":null,"SJAG_03544":null,"SJAG_03915":null,"SJAG_04003":null,"SJAG_04558":null,"SJAG_04745":null,"SJAG_04781":null,"SJAG_04901":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0000226"},{"rel_name":"part_of","termid":"GO:0007010"}],"interesting_parent_ids":["GO:0000226","GO:0008150","GO:0007010"],"is_obsolete":false,"name":"microtubule organizing center organization","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"microtubule organising center organisation","type":"exact"},{"name":"microtubule organizing center organization and biogenesis","type":"related"}],"termid":"GO:0031023","terms_by_termid":{"GO:0000073":null,"GO:0031023":null,"GO:0031024":null,"GO:0031025":null,"GO:0051300":null,"GO:0140456":null,"GO:1902441":null,"GO:1903087":null,"GO:1905047":null,"GO:1990395":null}}


id: PBO:0056178
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAFA antisense RNA 1","termid":"PBO:0056178"}


id: PBO:0003923
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methylenetetrahydrofolate reductase (predicted)","termid":"PBO:0003923"}


id: PBO:0013086
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IMPACT domain protein, Dbl3","termid":"PBO:0013086"}


id: PR:Q8NKC0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBPB21E7.09 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q8NKC0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-asparaginase 3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBPB21E7.09","synonyms":[{"name":"L-asparagine amidohydrolase 3 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-SPBPB21E7.09","type":"exact"}],"termid":"PR:Q8NKC0"}


id: PBO:0089946
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit S33","termid":"PBO:0089946"}


id: GO:0093001
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a storage polysaccharide into pyruvate through a glucose-1-phosphate intermediate, with the concomitant production of a small amount of ATP and the reduction of NAD to NADH.","definition_xrefs":["GOC:glycolysis","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide catabolic process","termid":"GO:0000272"},{"relation_name":"is_a","term_name":"glycolytic process through glucose-1-phosphate","termid":"GO:0061622"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150","GO:0006091","GO:0005975"],"is_obsolete":false,"name":"glycolysis from storage polysaccharide through glucose-1-phosphate","termid":"GO:0093001"}


id: PR:P41390
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An amidophosphoribosyltransferase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02227","PANTHER:PTHR11907:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amidophosphoribosyltransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4D7.08c","secondary_identifiers":["UniProtKB:P41390"],"synonyms":[{"name":"ATase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-PPAT","type":"exact"},{"name":"glutamine phosphoribosylpyrophosphate amidotransferase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P41390"}


id: GO:1904551
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an arachidonic acid stimulus.","definition_xrefs":["GOC:TermGenie","PMID:16382163","GO_REF:0000071"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to fatty acid","termid":"GO:0071398"},{"relation_name":"is_a","term_name":"response to arachidonate","termid":"GO:1904550"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to arachidonate","synonyms":[{"name":"cellular response to arachidonic acid","type":"exact"}],"termid":"GO:1904551"}


id: PBO:0005580
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hir protein binding region","termid":"PBO:0005580"}


id: PBO:0000110
data:
  {"annotation_feature_type":"gene","cv_name":"species_dist","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"orthologs cannot be distinguished","termid":"PBO:0000110"}


id: RO:0002343
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","direct_ancestors":[{"relation_name":"is_a","term_name":"has_participant","termid":"RO:0000057"},{"relation_name":"is_a","term_name":"results_in_developmental_progression_of","termid":"_global:results_in_developmental_progression_of"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"results_in_growth_of","termid":"RO:0002343"}


id: PBO:0056255
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mal, T cell differentiation protein like","termid":"PBO:0056255"}


id: PBO:0043854
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"capping protein inhibiting regulator of actin dynamics","termid":"PBO:0043854"}


id: PBO:0049517
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2AC histone family pseudogene 2","termid":"PBO:0049517"}


id: PBO:0077215
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation machinery associated 7 homolog","termid":"PBO:0077215"}


id: PBO:0002644
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H4 h4.1","termid":"PBO:0002644"}


id: MONDO:0011268
data:
  {"annotated_genes":["SJAG_00516"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86463],"is_not":false,"summary":null,"term":"MONDO:0011268"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"renal tubular acidosis","termid":"MONDO:0001909"},{"relation_name":"is_a","term_name":"inherited renal tubular disease","termid":"MONDO:0015962"},{"relation_name":"is_a","term_name":"autosomal recessive distal renal tubular acidosis","termid":"MONDO:0018440"},{"relation_name":"is_a","term_name":"inborn errors of metabolism","termid":"MONDO:0019052"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00516":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"},{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0005240","MONDO:0005066"],"is_obsolete":false,"name":"renal tubular acidosis, distal, 3, with or without sensorineural hearing loss","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5399980","GARD:15350","MEDGEN:1732975","OMIM:602722"],"synonyms":[{"name":"RTA, distal, autosomal recessive","type":"related"},{"name":"RTADR","type":"related"},{"name":"classical distal RTA","type":"exact"},{"name":"classical distal renal tubular acidosis","type":"exact"},{"name":"distal renal tubular acidosis 3, with or without sensorineural hearing loss","type":"exact"},{"name":"renal tubular acidosis, autosomal recessive with preserved hearing","type":"related"},{"name":"renal tubular acidosis, autosomal recessive, with preserved hearing","type":"related"},{"name":"renal tubular acidosis, distal, 3, with or without sensorineural hearing loss","type":"exact"},{"name":"renal tubular acidosis, distal, autosomal recessive","type":"exact"},{"name":"renal tubular acidosis, distal, autosomal recessive, with late-onset sensorineural hearing loss","type":"related"},{"name":"renal tubular acidosis, distal, autosomal recessive, with late-onset sensorineural hearing loss, included","type":"related"},{"name":"type 1 RTA","type":"exact"},{"name":"type 1 renal tubular acidosis","type":"exact"}],"termid":"MONDO:0011268","terms_by_termid":{"MONDO:0011268":null},"xrefs":{"Monarch":{"xref_id":"0011268"}}}


id: PBO:0049486
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H1-8 pseudogene 2","termid":"PBO:0049486"}


id: MONDO:0054801
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"familial polycythemia","termid":"MONDO:0001115"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"erythrocytosis, familial, 6","secondary_identifiers":["MEDGEN:1634191","OMIM:617980","DOID:0111632","UMLS:C4693822"],"synonyms":[{"name":"ECYT6","type":"related"},{"name":"erythrocytosis 6","type":"exact"},{"name":"erythrocytosis, Beta-globin type","type":"related"},{"name":"erythrocytosis, FAMILIAL, 6","type":"related"},{"name":"polycythemia, Beta-globin type","type":"related"}],"termid":"MONDO:0054801","xrefs":{"Monarch":{"xref_id":"0054801"}}}


id: PBO:0112873
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lincRNA regulator of IL2RA","termid":"PBO:0112873"}


id: GO:0090110
data:
  {"annotated_genes":["SJAG_03153","SJAG_03558","SJAG_02349","SJAG_05344","SJAG_02539","SJAG_00072","SJAG_05345"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71708,75143,75374,76002,76824,77413,78758],"is_not":false,"summary":null,"term":"GO:0090110"}]},"cv_name":"biological_process","definition":"The formation of a macromolecular complex between the COPII coat proteins and proteins and/or lipoproteins that are going to be transported by the COPII vesicle to the Golgi.","definition_xrefs":["GOC:ascb_2009","GOC:lb","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle cargo loading","termid":"GO:0035459"},{"relation_name":"is_a","term_name":"intracellular transport","termid":"GO:0046907"},{"relation_name":"part_of","term_name":"COPII-coated vesicle budding","termid":"GO:0090114"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00072":null,"SJAG_02349":null,"SJAG_02539":null,"SJAG_03153":null,"SJAG_03558":null,"SJAG_05344":null,"SJAG_05345":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0061024"},{"rel_name":"part_of","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0016192","GO:0051179","GO:0008150","GO:0061024"],"is_obsolete":false,"name":"COPII-coated vesicle cargo loading","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"COPII coat-cargo complex assembly","type":"related"},{"name":"cargo loading into COPII vesicle","type":"exact"},{"name":"cargo loading into COPII-coated vesicle","type":"exact"},{"name":"cargo selection into COPII-coated vesicle","type":"exact"}],"termid":"GO:0090110","terms_by_termid":{"GO:0090110":null}}


id: PBO:0079216
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thiosulfate sulfurtransferase like domain containing 1","termid":"PBO:0079216"}


id: MONDO:0019377
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Mycoplasma encephalitis is a rare infectious encephalitis characterized by an acute onset of neurological signs and symptoms (e.g. altered consciousness, seizures, headaches, meningeal signs, behavioral changes) due to bacterial infection by Mycoplasma pneumoniae. Patients typically present unspecific signs and symptoms, such as fever, nausea, vomiting, fatigue, prior to onset of neurological manifestations and frequently have a history of a respiratory tract infection (e.g. pneumonia, bronchiolitis, pharyngitis).","definition_xrefs":["Orphanet:83482"],"direct_ancestors":[{"relation_name":"is_a","term_name":"infectious encephalitis","termid":"MONDO:0020067"},{"relation_name":"is_a","term_name":"Mycoplasmoides infection","termid":"MONDO:1030003"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mycoplasma encephalitis","secondary_identifiers":["MEDGEN:1636101","UMLS:C4707240","GARD:19040"],"synonyms":[{"name":"Mycoplasma pneumoniae caused infectious encephalitis","type":"exact"},{"name":"Mycoplasma pneumoniae infectious encephalitis","type":"exact"}],"termid":"MONDO:0019377","xrefs":{"Monarch":{"xref_id":"0019377"}}}


id: MONDO:0044925
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A carcinoma arising in the oral cavity. Most oral cavity carcinomas are squamous cell carcinomas of the tongue, buccal mucosa, or gums. Less frequent morphologic variants include mucoepidermoid carcinoma and adenocarcinoma.","definition_xrefs":["NCIT:C8990"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oral cavity cancer","termid":"MONDO:0005515"},{"relation_name":"is_a","term_name":"digestive system carcinoma","termid":"MONDO:0006181"},{"relation_name":"is_a","term_name":"lip and oral cavity carcinoma","termid":"MONDO:0023644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0004335"],"is_obsolete":false,"name":"oral cavity carcinoma","secondary_identifiers":["UMLS:C0151546","MEDGEN:57468"],"synonyms":[{"name":"carcinoma of mouth","type":"exact"},{"name":"carcinoma of oral cavity","type":"exact"},{"name":"carcinoma of the oral cavity","type":"exact"},{"name":"mouth carcinoma","type":"exact"},{"name":"oral cavity cancer","type":"broad"},{"name":"oral cavity carcinoma","type":"exact"}],"termid":"MONDO:0044925","xrefs":{"Monarch":{"xref_id":"0044925"}}}


id: GO:0085017
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The invasion by a symbiont of a cell of a host organism, forming a vacuole in which the symbiont resides. The vacuole membrane is formed from lipids and proteins derived from both host and symbiont. Begins when the symbiont attaches on to the host cell membrane which invaginates and deepens as the symbiont enters, and ends when the host cell membrane closes behind the newly-formed vacuole.","definition_xrefs":["GOC:jl","PMID:18665841","PMID:8690024","PMID:9580555"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont entry into host cell","termid":"GO:0046718"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"entry into host cell by a symbiont-containing vacuole","secondary_identifiers":["GO:0052370"],"synonyms":[{"name":"symbiont entry into host cell forming a parasitophorous vacuole","type":"exact"},{"name":"symbiont entry into host cell forming a pathogen-containing vacuole","type":"exact"},{"name":"symbiont entry into host cell forming a symbiont-containing vacuole","type":"related"}],"termid":"GO:0085017"}


id: MONDO:0005421
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete infantile hypertrophic pyloric stenosis (obsolete MONDO:0005421)","termid":"MONDO:0005421","xrefs":{"Monarch":{"xref_id":"0005421"}}}


id: MONDO:0001564
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any inability to efficiently utilize and/or sustain binocular vision.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"strabismus","termid":"MONDO:0003432"},{"relation_name":"is_a","term_name":"vision disorder","termid":"MONDO:0021084"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"binocular vision disease","secondary_identifiers":["SCTID:83275001","ICD9:368.30","UMLS:C0005461","MEDGEN:571","DOID:12667","NCIT:C34422","EFO:0009535"],"synonyms":[{"name":"binocular vision disorder","type":"exact"},{"name":"simultaneous visual perception without fusion","type":"narrow"}],"termid":"MONDO:0001564","xrefs":{"Monarch":{"xref_id":"0001564"}}}


id: PBO:0072983
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"schwannomin interacting protein 1","termid":"PBO:0072983"}


id: PBO:0055419
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2849","termid":"PBO:0055419"}


id: GO:0060918
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of auxin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Auxins are a group of plant hormones that regulates aspects of plant growth.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hormone transport","termid":"GO:0009914"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"auxin transport","termid":"GO:0060918"}


id: GO:0032757
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of interleukin-8 production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of interleukin-8 production","termid":"GO:0032677"},{"relation_name":"positively_regulates","term_name":"interleukin-8 production","termid":"GO:0032637"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of interleukin-8 production","secondary_identifiers":["GO:0045416","GO:2000484"],"synonyms":[{"name":"activation of interleukin-8 production","type":"narrow"},{"name":"positive regulation of IL-8 production","type":"exact"},{"name":"positive regulation of interleukin-8 biosynthetic process","type":"narrow"},{"name":"positive regulation of interleukin-8 secretion","type":"narrow"},{"name":"stimulation of interleukin-8 production","type":"narrow"},{"name":"up regulation of interleukin-8 production","type":"exact"},{"name":"up-regulation of interleukin-8 production","type":"exact"},{"name":"upregulation of interleukin-8 production","type":"exact"}],"termid":"GO:0032757"}


id: MONDO:0009429
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypophosphatemia, renal, with intracerebral calcifications","secondary_identifiers":["OMIM:241519","MESH:C565478","MEDGEN:383776","UMLS:C1855809"],"synonyms":[{"name":"hypophosphatemia, renal, with intracerebral calcifications","type":"exact"}],"termid":"MONDO:0009429","xrefs":{"Monarch":{"xref_id":"0009429"}}}


id: PBO:0036479
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase copper chaperone Cox17 (predicted)","termid":"PBO:0036479"}


id: PBO:0000445
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.7.7.6","termid":"PBO:0000445"}


id: PBO:0078064
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha joining 54","termid":"PBO:0078064"}


id: PBO:0066389
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RecQ like helicase 5","termid":"PBO:0066389"}


id: MONDO:0970994
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"immunodeficiency disease","termid":"MONDO:0021094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"immunodeficiency 120","secondary_identifiers":["OMIM:620836","MEDGEN:1862745","UMLS:C5935622"],"termid":"MONDO:0970994","xrefs":{"Monarch":{"xref_id":"0970994"}}}


id: MONDO:1011133
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pneumothorax that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pneumothorax, non-human animal","termid":"MONDO:1010286"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pneumothorax, dog","secondary_identifiers":["OMIA:000804-9615"],"termid":"MONDO:1011133","xrefs":{"Monarch":{"xref_id":"1011133"}}}


id: FYPO:0005176
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of ferric-chelate reductase activity is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased catalytic activity","termid":"FYPO:0000662"},{"relation_name":"is_a","term_name":"abnormal ferric-chelate reductase activity","termid":"FYPO:0001847"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0000652","FYPO:0000654","FYPO:0000707","FYPO:0001985"],"is_obsolete":false,"name":"increased ferric-chelate reductase activity","termid":"FYPO:0005176"}


id: PBO:0062892
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OXA1L mitochondrial inner membrane protein","termid":"PBO:0062892"}


id: GO:0047261
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: estradiol-17alpha 3-D-glucuronoside + UDP-N-acetyl-alpha-D-glucosamine = 17alpha-(N-acetyl-D-glucosaminyl)-estradiol 3-D-glucuronoside + H+ + UDP.","definition_xrefs":["EC:2.4.1.39","RHEA:14153"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylglucosaminyltransferase activity","termid":"GO:0008375"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0016757","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"steroid N-acetylglucosaminyltransferase activity","secondary_identifiers":["MetaCyc:2.4.1.39-RXN","KEGG_REACTION:R04451"],"synonyms":[{"name":"UDP-N-acetyl-D-glucosamine:estradiol-17alpha-3-D-glucuronoside 17alpha-N-acetylglucosaminyltransferase activity","type":"related"},{"name":"hydroxy steroid acetylglucosaminyltransferase activity","type":"related"},{"name":"steroid acetylglucosaminyltransferase activity","type":"related"},{"name":"uridine diphosphoacetylglucosamine-steroid acetylglucosaminyltransferase activity","type":"related"}],"termid":"GO:0047261"}


id: PBO:0038534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"abhydrolase domain containing 10, depalmitoylase","termid":"PBO:0038534"}


id: GO:0021948
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a deep nuclear neuron from the rostrodorsal region of the cerebellar plate to their final more ventral position.","definition_xrefs":["PMID:15157725","GOC:cls","GOC:dph","GO_REF:0000021","GOC:dgh","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron migration","termid":"GO:0001764"},{"relation_name":"is_a","term_name":"cell migration in hindbrain","termid":"GO:0021535"},{"relation_name":"part_of","term_name":"deep nuclear neuron cell migration","termid":"GO:0021946"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"inward migration of deep nuclear neurons","termid":"GO:0021948"}


id: GO:0140627
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a protein or peptide covalently tagged with ubiquitin, via the DesCEND (destruction via C-end degron) pathway. In the DesCEND pathway, C-terminal residues (C-end degrons) in substrates are recognized by Cul2-RING and Cul4-RING E3 ligases, whereupon the substrates are linked to ubiquitin and then delivered to the proteasome for degradation. C-end degrons can be present in full-length proteins, truncated proteins or proteolytically cleaved forms.","definition_xrefs":["PMID:29779948","PMID:29775578"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proteasome-mediated ubiquitin-dependent protein catabolic process","termid":"GO:0043161"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0030163"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0030163"}],"interesting_parent_ids":["GO:0030163","GO:0008150"],"is_obsolete":false,"name":"ubiquitin-dependent protein catabolic process via the C-end degron rule pathway","synonyms":[{"name":"DesCEND","type":"exact"}],"termid":"GO:0140627"}


id: PBO:0074277
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLIRP. pseudogene 1","termid":"PBO:0074277"}


id: PBO:0038723
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin gamma 1 pseudogene 18","termid":"PBO:0038723"}


id: MONDO:1011755
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"integumentary system disorder, non-human animal","termid":"MONDO:1011328"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sebaceous adenitis, non-human animal","secondary_identifiers":["OMIA:001563"],"termid":"MONDO:1011755","xrefs":{"Monarch":{"xref_id":"1011755"}}}


id: PBO:0025530
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial iron-sulfur cluster assembly protein Isa2","termid":"PBO:0025530"}


id: PBO:0077036
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"THOC3 antisense RNA 1","termid":"PBO:0077036"}


id: GO:0005340
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of nucleotide-sulfate from one side of a membrane to the other.","definition_xrefs":["GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfate transmembrane transporter activity","termid":"GO:0015116"},{"relation_name":"is_a","term_name":"organophosphate ester transmembrane transporter activity","termid":"GO:0015605"},{"relation_name":"is_a","term_name":"nucleobase-containing compound transmembrane transporter activity","termid":"GO:0015932"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"nucleotide-sulfate transmembrane transporter activity","secondary_identifiers":["GO:0005341"],"synonyms":[{"name":"nucleotide-sulphate transporter activity","type":"exact"}],"termid":"GO:0005340"}


id: PBO:0116812
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EGFLAM antisense RNA 5","termid":"PBO:0116812"}


id: GO:0043621
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binding to a domain within the same polypeptide.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete protein self-association (obsolete GO:0043621)","synonyms":[{"name":"intramolecular protein binding","type":"exact"},{"name":"protein self association","type":"exact"},{"name":"protein self binding","type":"exact"}],"termid":"GO:0043621"}


id: PBO:0074147
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC35C2 pseudogene 1","termid":"PBO:0074147"}


id: PBO:0005527
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dicer","termid":"PBO:0005527"}


id: PBO:0002388
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation elongation factor eIF5A (predicted)","termid":"PBO:0002388"}


id: PBO:0044628
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dachsous cadherin-related 2","termid":"PBO:0044628"}


id: PBO:0068937
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 180, pseudogene","termid":"PBO:0068937"}


id: RO:0002459
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","direct_ancestors":[{"relation_name":"is_a","term_name":"participates_in_a_biotic-biotic_interaction_with","termid":"RO:0002574"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"is_vector_for","termid":"RO:0002459"}


id: PBO:0062364
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 6 subfamily X member 1","termid":"PBO:0062364"}


id: PBO:0003381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cortical anchoring factor for dynein Mcp5/Num1","termid":"PBO:0003381"}


id: PBO:0077330
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 67","termid":"PBO:0077330"}


id: GO:0090305
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.","definition_xrefs":["GOC:dph","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete nucleic acid phosphodiester bond hydrolysis (obsolete GO:0090305)","synonyms":[{"name":"nucleic acid cleavage","type":"exact"}],"termid":"GO:0090305"}


id: PBO:0041863
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"caspase 8 associated protein 2","termid":"PBO:0041863"}


id: GO:0006672
data:
  {"annotated_genes":["SJAG_02305","SJAG_04178","SJAG_01219","SJAG_02085","SJAG_01057","SJAG_02842","SJAG_04550"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73363],"is_not":false,"summary":null,"term":"GO:0006672"},{"annotations":[109144,79220,74619,77190,78338,79394],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046513"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving ceramides, any N-acylated sphingoid.","definition_xrefs":["ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sphingolipid metabolic process","termid":"GO:0006665"},{"relation_name":"is_a","term_name":"amide metabolic process","termid":"GO:0043603"}],"gene_count":7,"genes_by_uniquename":{"SJAG_01057":null,"SJAG_01219":null,"SJAG_02085":null,"SJAG_02305":null,"SJAG_02842":null,"SJAG_04178":null,"SJAG_04550":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"ceramide metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"ceramide metabolism","type":"exact"}],"termid":"GO:0006672","terms_by_termid":{"GO:0006672":null,"GO:0046513":null}}


id: PBO:0030144
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_L-thialysine","termid":"PBO:0030144"}


id: MONDO:0017675
data:
  {"annotated_genes":["SJAG_05011"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85357],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007858"}]},"cv_name":"mondo","definition":"A palmoplantar keratosis characterized by keratoses with a \\\"raindrop\\\" pattern on the palmoplantar surface, skin lesions which may involve the whole of the palmoplantar surface, or may be more restricted in their distribution.","definition_xrefs":["DOID:0060361","Wikipedia:Palmoplantar_keratoderma#Punctate"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary palmoplantar keratoderma","termid":"MONDO:0019272"}],"gene_count":1,"genes_by_uniquename":{"SJAG_05011":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"punctate palmoplantar keratoderma","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["icd11.foundation:1212361548","Orphanet:307967","UMLS:C4024851","MEDGEN:870406","GARD:21297","SCTID:402773000"],"synonyms":[{"name":"punctate PPK","type":"exact"},{"name":"punctate keratosis palmoplantaris","type":"exact"},{"name":"punctate palmoplantar hyperkeratosis","type":"exact"}],"termid":"MONDO:0017675","terms_by_termid":{"MONDO:0007858":null},"xrefs":{"Monarch":{"xref_id":"0017675"}}}


id: PBO:0091739
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytosolic TRNA thioUridylase","termid":"PBO:0091739"}


id: PR:Q09856
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A U4/U6 small nuclear ribonucleoprotein Prp3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR14212:SF0","PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U4/U5/U6 small nuclear ribonucleoprotein prp3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC29E6.02","secondary_identifiers":["UniProtKB:Q09856"],"synonyms":[{"name":"SPAC29E6.02","type":"related"},{"name":"Spom972h-PRPF3","type":"exact"},{"name":"pre-mRNA-splicing factor 3 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q09856"}


id: PBO:0080315
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 79 pseudogene","termid":"PBO:0080315"}


id: PBO:0040025
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"armadillo repeat containing X-linked 1","termid":"PBO:0040025"}


id: GO:1905494
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of G-quadruplex DNA binding.","definition_xrefs":["GOC:TermGenie","GO_REF:0000059","PMID:26503245"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of G-quadruplex DNA binding (obsolete GO:1905494)","synonyms":[{"name":"down regulation of G quadruplex DNA binding","type":"exact"},{"name":"down regulation of G quartet DNA binding","type":"exact"},{"name":"down regulation of G-DNA binding","type":"exact"},{"name":"down regulation of G-quadruplex DNA binding","type":"exact"},{"name":"down regulation of G-quartet DNA binding","type":"exact"},{"name":"down regulation of quadruplex DNA binding","type":"exact"},{"name":"down regulation of tetraplex DNA binding","type":"exact"},{"name":"down-regulation of G quadruplex DNA binding","type":"exact"},{"name":"down-regulation of G quartet DNA binding","type":"exact"},{"name":"down-regulation of G-DNA binding","type":"exact"},{"name":"down-regulation of G-quadruplex DNA binding","type":"exact"},{"name":"down-regulation of G-quartet DNA binding","type":"exact"},{"name":"down-regulation of quadruplex DNA binding","type":"exact"},{"name":"down-regulation of tetraplex DNA binding","type":"exact"},{"name":"downregulation of G quadruplex DNA binding","type":"exact"},{"name":"downregulation of G quartet DNA binding","type":"exact"},{"name":"downregulation of G-DNA binding","type":"exact"},{"name":"downregulation of G-quadruplex DNA binding","type":"exact"},{"name":"downregulation of G-quartet DNA binding","type":"exact"},{"name":"downregulation of quadruplex DNA binding","type":"exact"},{"name":"downregulation of tetraplex DNA binding","type":"exact"},{"name":"inhibition of G quadruplex DNA binding","type":"narrow"},{"name":"inhibition of G quartet DNA binding","type":"narrow"},{"name":"inhibition of G-DNA binding","type":"narrow"},{"name":"inhibition of G-quadruplex DNA binding","type":"narrow"},{"name":"inhibition of G-quartet DNA binding","type":"narrow"},{"name":"inhibition of quadruplex DNA binding","type":"narrow"},{"name":"inhibition of tetraplex DNA binding","type":"narrow"},{"name":"negative regulation of G quadruplex DNA binding","type":"exact"},{"name":"negative regulation of G quartet DNA binding","type":"exact"},{"name":"negative regulation of G-DNA binding","type":"exact"},{"name":"negative regulation of G-quartet DNA binding","type":"exact"},{"name":"negative regulation of quadruplex DNA binding","type":"exact"},{"name":"negative regulation of tetraplex DNA binding","type":"exact"}],"termid":"GO:1905494"}


id: GO:0032220
data:
  {"annotated_genes":["SJAG_02351","SJAG_04887","SJAG_02878","SJAG_00870","SJAG_02924"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[78210,92677,95616,96693,110521],"is_not":false,"summary":null,"term":"GO:0032220"}]},"cv_name":"biological_process","definition":"The joining of two or more lipid bilayer membranes that surround cells, that contributes to cytogamy.","definition_xrefs":["PMID:29134248","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane fusion","termid":"GO:0045026"},{"relation_name":"part_of","term_name":"cytogamy","termid":"GO:0000755"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00870":null,"SJAG_02351":null,"SJAG_02878":null,"SJAG_02924":null,"SJAG_04887":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0000747"}],"interesting_parent_ids":["GO:0008150","GO:0000747","GO:0061024"],"is_obsolete":false,"name":"plasma membrane fusion involved in cytogamy","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0070872"],"synonyms":[{"name":"plasma membrane fusion during cytogamy","type":"related"},{"name":"plasma membrane organization involved in conjugation with cellular fusion","type":"exact"}],"termid":"GO:0032220","terms_by_termid":{"GO:0032220":null}}


id: FYPO:0000108
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to menadione. Cells stop growing (and may die) at a concentration of menadione that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0000003","FYPO:0005447","FYPO:0002683","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to menadione","synonyms":[{"name":"hypersensitive to menadione","type":"exact"},{"name":"sensitive to menadione during mitotic cell cycle","type":"related"},{"name":"sensitive to menadione during vegetative growth","type":"exact"},{"name":"sensitive to vitamin K3","type":"related"}],"termid":"FYPO:0000108"}


id: FYPO:0001952
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the export of calcium ions out of a cell occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal calcium export","termid":"FYPO:0001951"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000138","FYPO:0001320"],"is_obsolete":false,"name":"decreased calcium export","synonyms":[{"name":"decreased calcium efflux from cell","type":"exact"},{"name":"decreased calcium export during mitotic cell cycle","type":"related"},{"name":"decreased calcium export during vegetative growth","type":"exact"},{"name":"decreased calcium export from cell","type":"narrow"},{"name":"decreased calcium ion export","type":"exact"},{"name":"decreased cellular calcium export","type":"exact"},{"name":"reduced calcium export","type":"exact"}],"termid":"FYPO:0001952"}


id: GO:1902768
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of isoprenoid via 1-deoxy-D-xylulose 5-phosphate.","definition_xrefs":["PMID:23746261","GOC:mengo_curators","GOC:TermGenie","GO_REF:0000092"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isoprenoid biosynthetic process","termid":"GO:0008299"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"isoprenoid biosynthetic process via 1-deoxy-D-xylulose 5-phosphate","synonyms":[{"name":"isoprenoid anabolism via 1-deoxy-D-xylulose 5-phosphate","type":"exact"},{"name":"isoprenoid biosynthesis via 1-deoxy-D-xylulose 5-phosphate","type":"exact"},{"name":"isoprenoid formation via 1-deoxy-D-xylulose 5-phosphate","type":"exact"},{"name":"isoprenoid synthesis via 1-deoxy-D-xylulose 5-phosphate","type":"exact"}],"termid":"GO:1902768"}


id: PBO:0088551
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar polyphosphatase","termid":"PBO:0088551"}


id: PBO:0004600
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"karyopherin exportin T Los1 (predicted)","termid":"PBO:0004600"}


id: PBO:0039889
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho GTPase activating protein 44","termid":"PBO:0039889"}


id: PBO:0014613
data:
  {"annotation_feature_type":"gene","cv_name":"species_dist","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved in Schizosaccharomyces","termid":"PBO:0014613"}


id: GO:0022619
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a generative cell. The generative cell gives rise to the sperm cells in the male gametophyte.","definition_xrefs":["GOC:isa_complete"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation","termid":"GO:0030154"},{"relation_name":"part_of","term_name":"microgametogenesis","termid":"GO:0055046"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"generative cell differentiation","termid":"GO:0022619"}


id: GO:0032386
data:
  {"annotated_genes":["SJAG_03453","SJAG_04597","SJAG_01166","SJAG_04509","SJAG_01805","SJAG_02592","SJAG_03048","SJAG_04312","SJAG_01311","SJAG_01245","SJAG_04343","SJAG_04464"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[106139],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042308"},{"annotations":[94737],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902854"},{"annotations":[94131,102171,100764,111342],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046827"},{"annotations":[91174,94695,102704],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042307"},{"annotations":[88216],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001135"},{"annotations":[76959],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0060628"},{"annotations":[88220,92342],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033157"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the directed movement of substances within cells.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of transport","termid":"GO:0051049"},{"relation_name":"is_a","term_name":"regulation of cellular localization","termid":"GO:0060341"},{"relation_name":"regulates","term_name":"intracellular transport","termid":"GO:0046907"}],"gene_count":12,"genes_by_uniquename":{"SJAG_01166":null,"SJAG_01245":null,"SJAG_01311":null,"SJAG_01805":null,"SJAG_02592":null,"SJAG_03048":null,"SJAG_03453":null,"SJAG_04312":null,"SJAG_04343":null,"SJAG_04464":null,"SJAG_04509":null,"SJAG_04597":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"regulation of intracellular transport","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0032386","terms_by_termid":{"GO:0033157":null,"GO:0042307":null,"GO:0042308":null,"GO:0046827":null,"GO:0060628":null,"GO:1902854":null,"GO:2001135":null}}


id: PBO:0043605
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collagen beta(1-O)galactosyltransferase 2","termid":"PBO:0043605"}


id: MONDO:1011704
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hematologic disorder, non-human animal","termid":"MONDO:1011319"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exercise-induced pulmonary hemorrhage, non-human animal","secondary_identifiers":["OMIA:001896"],"termid":"MONDO:1011704","xrefs":{"Monarch":{"xref_id":"1011704"}}}


id: PBO:0074365
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"single-pass membrane protein with coiled-coil domains 3","termid":"PBO:0074365"}


id: PR:O14223
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- tvp15 gene.","definition_xrefs":["UniProtKB:O14223","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi apparatus membrane protein tvp15 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6F12.04","synonyms":[{"name":"Spom972h-tvp15","type":"exact"}],"termid":"PR:O14223"}


id: MONDO:0011012
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"African iron overload is a rare disorder described in sub-Saharan African populations and is characterized by iron overload due to excess dietary iron intake and possibly genetic factors, leading to hepatic portal fibrosis and micronodular cirrhosis.","definition_xrefs":["Orphanet:139507"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary hemochromatosis","termid":"MONDO:0006507"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"African iron overload","secondary_identifiers":["icd11.foundation:869212237","GARD:8495","NORD:740","OMIM:601195","UMLS:C0268063","MEDGEN:75649","MESH:C537904","DOID:0111033","SCTID:66576001"],"synonyms":[{"name":"African iron overload","type":"exact"},{"name":"Bantu siderosis","type":"exact"},{"name":"hereditary iron overload and African Americans","type":"related"},{"name":"iron overload in Africa","type":"exact"}],"termid":"MONDO:0011012","xrefs":{"Monarch":{"xref_id":"0011012"}}}


id: PBO:0047385
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box protein 22","termid":"PBO:0047385"}


id: GO:0019827
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process by which an organism or tissue maintains a population of stem cells of a single type. This can be achieved by a number of mechanisms: stem cell asymmetric division maintains stem cell numbers; stem cell symmetric division increases them; maintenance of a stem cell niche maintains the conditions for commitment to the stem cell fate for some types of stem cell; stem cells may arise de novo from other cell types.","definition_xrefs":["ISBN:0878932437","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal process","termid":"GO:0032501"},{"relation_name":"is_a","term_name":"maintenance of cell number","termid":"GO:0098727"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"stem cell population maintenance","synonyms":[{"name":"maintenance of pluripotency","type":"related"}],"termid":"GO:0019827"}


id: MONDO:0018102
data:
  {"annotated_genes":["SJAG_00638"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86727],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007376"}]},"cv_name":"mondo","definition":"The term corneal dystrophy embraces a heterogeneous group of bilateral genetically determined non-inflammatory corneal diseases that are usually restricted to the cornea. The designation is imprecise but remains in vogue because of its clinical value.","definition_xrefs":["Orphanet:34533"],"direct_ancestors":[{"relation_name":"is_a","term_name":"corneal disorder","termid":"MONDO:0000942"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00638":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"corneal dystrophy","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:2566","ICD9:371.50","MESH:D003317","NCIT:C34513","UMLS:C0010036","icd11.foundation:1291475891","ICD9:371.5","MedDRA:10011005","MEDGEN:3619","HP:0001131","SCTID:5587004"],"synonyms":[{"name":"corneal dystrophy","type":"exact"},{"name":"corneal dystrophy (disease)","type":"exact"}],"termid":"MONDO:0018102","terms_by_termid":{"MONDO:0007376":null},"xrefs":{"Monarch":{"xref_id":"0018102"}}}


id: MONDO:0019012
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An extremely rare autosomal recessive syndrome characterized by premature closure of cranial sutures leading to cone-shaped head, fusion of the digits, and the presence of more digits than normal. It may be associated with heart defects, single horseshoe-shaped kidney, short stature, undescended testes, and mild mental retardation.","definition_xrefs":["NCIT:C98873"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acrocephalopolysyndactyly","termid":"MONDO:0000078"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-variable intellectual disability syndrome","termid":"MONDO:0015160"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"Carpenter syndrome","secondary_identifiers":["icd11.foundation:2132713612","SCTID:403767009","SCTID:83728000","NANDO:2200847","UMLS:C1275078","DOID:0060234","OMIMPS:201000","MEDGEN:226897","GARD:6003","Orphanet:65759","NORD:897"],"synonyms":[{"name":"ACPS2","type":"exact"},{"name":"Carpenter 's syndrome","type":"exact"},{"name":"Carpenter syndrome","type":"exact"},{"name":"acrocephalopolysyndactyly type 2","type":"exact"},{"name":"acrocephalopolysyndactyly type II","type":"exact"},{"name":"acrocephalosyndactyly, type II","type":"related"},{"name":"type II Acrocephalopolysyndactyly","type":"exact"}],"termid":"MONDO:0019012","xrefs":{"Monarch":{"xref_id":"0019012"}}}


id: GO:0072548
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: dicoumaroyl monocaffeoyl spermidine + NADPH + O2 = monocoumaroyl dicaffeoyl spermidine + NADP+ + H2O.","definition_xrefs":["PMID:19779199","GOC:kad"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tri-(coumaroyl or caffeoyl) spermidine meta-hydroxylase activity","termid":"GO:0072533"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"dicoumaroyl monocaffeoyl spermidine meta-hydroxylase activity","termid":"GO:0072548"}


id: PBO:0065971
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAD52 homolog, DNA repair protein","termid":"PBO:0065971"}


id: PBO:0094074
data:
  {"annotation_feature_type":"gene","cv_name":"feature_cvtermprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_phenotype_score","termid":"PBO:0094074"}


id: GO:1902136
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving (-)-secoisolariciresinol.","definition_xrefs":["PMID:8910615","PMID:9872995","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lignan metabolic process","termid":"GO:0009806"},{"relation_name":"is_a","term_name":"phenol-containing compound metabolic process","termid":"GO:0018958"},{"relation_name":"is_a","term_name":"diol metabolic process","termid":"GO:0034311"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0019748","GO:0044281"],"is_obsolete":false,"name":"(-)-secoisolariciresinol metabolic process","synonyms":[{"name":"(-)-secoisolariciresinol metabolism","type":"exact"}],"termid":"GO:1902136"}


id: MOD:01757
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces an O3-hydrogen atom of a serine residue with the Proteome Sciences TMT6plex-130 reporter+balance group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"TMT6plex reporter+balance reagent O-acylated residue","termid":"MOD:01719"},{"relation_name":"is_a","term_name":"TMT6plex-130 reporter+balance reagent acylated residue","termid":"MOD:01752"},{"relation_name":"is_a","term_name":"O3-acylated L-serine","termid":"MOD:02003"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMT6plex-130 reporter+balance reagent O3-acylated serine","synonyms":[{"name":"3-[(2,6-dimethylpiperidin-1-yl)acetyl]amino)propanoyl","type":"exact"},{"name":"Sixplex Tandem Mass Tag(TM)","type":"related"},{"name":"TMT6plex","type":"related"}],"termid":"MOD:01757"}


id: GO:0032215
data:
  {"annotated_genes":["SJAG_03624"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97506],"is_not":false,"summary":null,"term":"GO:0032215"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the semi-conservative replication of telomeric DNA.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of telomere maintenance","termid":"GO:0032206"},{"relation_name":"is_a","term_name":"regulation of telomere maintenance via semi-conservative replication","termid":"GO:0032213"},{"relation_name":"is_a","term_name":"positive regulation of cell cycle process","termid":"GO:0090068"},{"relation_name":"positively_regulates","term_name":"telomere maintenance via semi-conservative replication","termid":"GO:0032201"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03624":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0032200"},{"rel_name":"positively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"positively_regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0032200"},{"rel_name":"regulates","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006259","GO:0007049","GO:0008150","GO:0032200"],"is_obsolete":false,"name":"positive regulation of telomere maintenance via semi-conservative replication","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of telomere maintenance via semi-conservative replication","type":"narrow"},{"name":"stimulation of telomere maintenance via semi-conservative replication","type":"narrow"},{"name":"up regulation of telomere maintenance via semi-conservative replication","type":"exact"},{"name":"up-regulation of telomere maintenance via semi-conservative replication","type":"exact"},{"name":"upregulation of telomere maintenance via semi-conservative replication","type":"exact"}],"termid":"GO:0032215","terms_by_termid":{"GO:0032215":null}}


id: PBO:0036310
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-protein ligase E3 involved in vesicle docking Pep5/Vps11-like (predicted)","termid":"PBO:0036310"}


id: MONDO:0001326
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Death of pulp tissue with or without bacterial invasion. When the necrosis is due to ischemia with superimposed bacterial infection, it is referred to as pulp gangrene. When the necrosis is non-bacterial in origin, it is called pulp mummification.","definition_xrefs":["MESH:D003790"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dental pulp disorder","termid":"MONDO:0003394"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dental pulp necrosis","secondary_identifiers":["UMLS:C0011407","ICD9:522.1","MEDGEN:8306","DOID:11623","SCTID:42711005","ICD10CM:K04.1"],"synonyms":[{"name":"necrosis of pulp","type":"exact"},{"name":"necrosis of the pulp","type":"exact"},{"name":"necrotic pulp","type":"exact"},{"name":"pulp necrosis","type":"exact"}],"termid":"MONDO:0001326","xrefs":{"Monarch":{"xref_id":"0001326"}}}


id: GO:1901684
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which arsenate is transported across a membrane.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arsenite transport","termid":"GO:0015700"},{"relation_name":"is_a","term_name":"transmembrane transport","termid":"GO:0055085"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"arsenate ion transmembrane transport","termid":"GO:1901684"}


id: MONDO:0014160
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A non-severe combined immunodeficiency disorder manifesting with recurrent respiratory infections, candidiasis, diarrhea, and failure to thrive. Patients show a clear predisposition to herpes viral infections, and features of immune dysregulation, including hypereosinophilia, vitiligo, and alopecia areata. Other features include lymphadenopathy and hepatosplenomegaly. CD3+ T-cells express TCR- gamma|delta, but little or no TCR-alpha|beta.","definition_xrefs":["DOID:0111977","OMIM:615387"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-SCID combined immunodeficiency","termid":"MONDO:0018814"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"TCR-alpha-beta-positive T-cell deficiency","secondary_identifiers":["Orphanet:397959","UMLS:C3809332","GARD:17646","MEDGEN:815662"],"synonyms":[{"name":"IMD7","type":"exact"},{"name":"T-cell receptor-ALPHA/BETA deficiency","type":"related"},{"name":"TCR-Alpha/Beta deficiency","type":"related"},{"name":"TCR-alpha-beta+ T-cell deficiency","type":"exact"},{"name":"immunodeficiency 7","type":"related"},{"name":"immunodeficiency 7, TCR-alpha/beta deficient","type":"exact"}],"termid":"MONDO:0014160","xrefs":{"Monarch":{"xref_id":"0014160"}}}


id: PBO:0072046
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S10 pseudogene 16","termid":"PBO:0072046"}


id: PBO:0063378
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosducin","termid":"PBO:0063378"}


id: PBO:0077538
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 250","termid":"PBO:0077538"}


id: MONDO:0016312
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"5-fluorouracil (5-FU) poisoning is a rare intoxication caused by the prolonged, low-dose administration of 5-FU, which is the mainstay of both adjuvant and advanced-disease chemotherapy regimens in colon cancer. 5-FU poisoning is characterized by gastrointestinal (nausea, emesis, diarrhea, anorexia, stomatitis) and hematologic (myelosuppression) toxicities as well as mucositis, alopecia and, occasionally, palmar-plantar dysesthesia (more commonly known as hand-foot syndrome). Women have been reported to experience more 5-FU-related toxicity than men.","definition_xrefs":["Orphanet:217064"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chemotherapy-induced toxicity","termid":"MONDO:0800390"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5-fluorouracil poisoning","secondary_identifiers":["MESH:C531667"],"synonyms":[{"name":"5-fluorouracil intoxication","type":"exact"}],"termid":"MONDO:0016312","xrefs":{"Monarch":{"xref_id":"0016312"}}}


id: RO:HOM0000046
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Historical homology that involves not recombining and subsequently differentiated sex chromosomes.","direct_ancestors":[{"relation_name":"is_a","term_name":"in_chromosomal_homology_relationship_with","termid":"RO:HOM0000047"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"in_gametology_relationship_with","synonyms":[{"name":"gametologous to","type":"exact"}],"termid":"RO:HOM0000046"}


id: GO:0051333
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell cycle process in which the reformation of the nuclear membranes during meiosis occurs.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear membrane reassembly","termid":"GO:0031468"},{"relation_name":"is_a","term_name":"meiotic cell cycle process","termid":"GO:1903046"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0061024"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0007049","GO:0061024","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"meiotic nuclear membrane reassembly","synonyms":[{"name":"meiotic nuclear envelope reassembly","type":"related"}],"termid":"GO:0051333"}


id: PR:Q9P7J8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- gad8 gene.","definition_xrefs":["UniProtKB:Q9P7J8","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein kinase gad8 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC24B10.07","synonyms":[{"name":"Spom972h-gad8","type":"exact"}],"termid":"PR:Q9P7J8"}


id: GO:0015292
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transport of a single molecular species across a membrane; transport is independent of the movement of any other molecular species.","definition_xrefs":["ISBN:0815340729","GOC:mtg_transport","PMID:10839820"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secondary active transmembrane transporter activity","termid":"GO:0015291"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"uniporter activity","synonyms":[{"name":"facilitated diffusion carrier","type":"exact"},{"name":"single-species transporter activity","type":"exact"},{"name":"uniport","type":"related"}],"termid":"GO:0015292"}


id: PBO:0064662
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A like 4E","termid":"PBO:0064662"}


id: PBO:0052050
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KANSL1 antisense RNA 1","termid":"PBO:0052050"}


id: MONDO:0008365
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Recombinant 8 (rec(8)) syndrome, also known as San Luis Valley syndrome, is a complex chromosomal disorder that is due to a parental pericentric inversion of chromosome 8 and is characterized by major congenital heart anomalies, urogenital malformations, moderate to severe intellectual deficiency and mild craniofacial dysmorphism.","definition_xrefs":["Orphanet:96167"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"recombinant 8 syndrome","secondary_identifiers":["GARD:9698","MEDGEN:167070","UMLS:C0795822","SCTID:718189004","MESH:C535296","OMIM:179613"],"synonyms":[{"name":"Duplication 8q/deletion 8p","type":"exact"},{"name":"RECOMBINANT chromosome 8 syndrome","type":"related"},{"name":"Rec(8) syndrome","type":"exact"},{"name":"Rec8 syndrome","type":"exact"},{"name":"Recombinant chromosome 8 syndrome","type":"exact"},{"name":"San Luis Valley recombinant chromosome 8 syndrome","type":"related"},{"name":"San Luis Valley syndrome","type":"exact"},{"name":"chromosome 8Q22.1-qter Duplication and 8Pter-p23.1 deletion","type":"related"}],"termid":"MONDO:0008365","xrefs":{"Monarch":{"xref_id":"0008365"}}}


id: PBO:0039762
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"APRG1 tumor suppressor candidate","termid":"PBO:0039762"}


id: PBO:0048328
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyceraldehyde 3 phosphate dehydrogenase pseudogene 39","termid":"PBO:0048328"}


id: GO:0019646
data:
  {"annotated_genes":["SJAG_01077","SJAG_04152","SJAG_03920","SJAG_03490","SJAG_02646","SJAG_MIT04","SJAG_02504","SJAG_01355","SJAG_00976","SJAG_05629","SJAG_01190","SJAG_07007","SJAG_00260","SJAG_02398","SJAG_07006","SJAG_MIT13","SJAG_01671","SJAG_01490","SJAG_00080","SJAG_02744","SJAG_MIT20","SJAG_00755","SJAG_MIT03","SJAG_00601","SJAG_01763"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[76609,79193,74631,114988,119361,114556,115788,108605,119383,119411,72359],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006123"},{"annotations":[113186],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006120"},{"annotations":[89507,117085,89139,113526],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006121"},{"annotations":[104394,118013,76608,119388,76166,76013,113733,61893,72431,74047],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006122"}]},"cv_name":"biological_process","definition":"A process in which a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to oxygen to generate a transmembrane electrochemical gradient.","definition_xrefs":["GOC:ai","GOC:mtg_electron_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aerobic respiration","termid":"GO:0009060"},{"relation_name":"is_a","term_name":"respiratory electron transport chain","termid":"GO:0022904"},{"relation_name":"part_of","term_name":"oxidative phosphorylation","termid":"GO:0006119"}],"gene_count":25,"genes_by_uniquename":{"SJAG_00080":null,"SJAG_00260":null,"SJAG_00601":null,"SJAG_00755":null,"SJAG_00976":null,"SJAG_01077":null,"SJAG_01190":null,"SJAG_01355":null,"SJAG_01490":null,"SJAG_01671":null,"SJAG_01763":null,"SJAG_02398":null,"SJAG_02504":null,"SJAG_02646":null,"SJAG_02744":null,"SJAG_03490":null,"SJAG_03920":null,"SJAG_04152":null,"SJAG_05629":null,"SJAG_07006":null,"SJAG_07007":null,"SJAG_MIT03":null,"SJAG_MIT04":null,"SJAG_MIT13":null,"SJAG_MIT20":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0008150","GO:0006091"],"is_obsolete":false,"name":"aerobic electron transport chain","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0006137","GO:0006138","GO:0006136"],"synonyms":[{"name":"NADH-O2 electron transport","type":"narrow"},{"name":"succinate-O2 electron transport","type":"narrow"},{"name":"ubiquinone-8-O2 electron transport","type":"narrow"}],"termid":"GO:0019646","terms_by_termid":{"GO:0006120":null,"GO:0006121":null,"GO:0006122":null,"GO:0006123":null}}


id: PR:Q9P802
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mis18 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P802"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinetochore protein mis18 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC970.12","synonyms":[{"name":"Spom972h-mis18","type":"exact"}],"termid":"PR:Q9P802"}


id: FYPO:0003304
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A microtubule cytoskeleton organization phenotype observed in the vegetative growth phase of the life cycle in which formation of the mitotic spindle midzone, the area in the center of the mitotic spindle where the spindle microtubules from opposite poles overlap, is abnormal.","definition_xrefs":["PomBase:mah","GO:0051256"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic spindle elongation","termid":"FYPO:0000131"},{"relation_name":"is_a","term_name":"abnormal mitotic spindle assembly","termid":"FYPO:0000177"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0000054","FYPO:0000337","FYPO:0001985","FYPO:0000631","FYPO:0000641","FYPO:0001320"],"is_obsolete":false,"name":"abnormal mitotic spindle midzone assembly","synonyms":[{"name":"abnormal mitotic spindle midzone assembly during vegetative growth","type":"exact"},{"name":"abnormal spindle midzone assembly during mitotic cell cycle","type":"related"},{"name":"abnormal spindle midzone assembly involved in mitosis","type":"exact"}],"termid":"FYPO:0003304"}


id: GO:0009597
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events in which a stimulus from a virus is received and converted into a molecular signal.","definition_xrefs":["GOC:hb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to virus","termid":"GO:0009615"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of virus","synonyms":[{"name":"perception of virus","type":"related"}],"termid":"GO:0009597"}


id: PBO:0002679
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exonuclease Rex3 (predicted)","termid":"PBO:0002679"}


id: PBO:0066376
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RDM1 pseudogene 3","termid":"PBO:0066376"}


id: MONDO:0018466
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete hereditary late onset Parkinson disease (obsolete MONDO:0018466)","termid":"MONDO:0018466","xrefs":{"Monarch":{"xref_id":"0018466"}}}


id: GO:0014057
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the regulated release of acetylcholine.","definition_xrefs":["GOC:ef"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of neurotransmitter secretion","termid":"GO:0001956"},{"relation_name":"is_a","term_name":"regulation of acetylcholine secretion, neurotransmission","termid":"GO:0014056"},{"relation_name":"is_a","term_name":"positive regulation of synaptic transmission, cholinergic","termid":"GO:0032224"},{"relation_name":"is_a","term_name":"positive regulation of amine transport","termid":"GO:0051954"},{"relation_name":"positively_regulates","term_name":"acetylcholine secretion, neurotransmission","termid":"GO:0014055"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0023052"],"is_obsolete":false,"name":"positive regulation of acetylcholine secretion, neurotransmission","synonyms":[{"name":"activation of acetylcholine secretion","type":"narrow"},{"name":"stimulation of acetylcholine secretion","type":"narrow"},{"name":"up regulation of acetylcholine secretion","type":"exact"},{"name":"up-regulation of acetylcholine secretion","type":"exact"},{"name":"upregulation of acetylcholine secretion","type":"exact"}],"termid":"GO:0014057"}


id: PBO:0075748
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SRSF protein kinase 1","termid":"PBO:0075748"}


id: GO:1902244
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving cis-abienol.","definition_xrefs":["GOC:TermGenie","PMID:22672125"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diterpenoid metabolic process","termid":"GO:0016101"},{"relation_name":"is_a","term_name":"tertiary alcohol metabolic process","termid":"GO:1902644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"cis-abienol metabolic process","synonyms":[{"name":"cis-abienol metabolism","type":"exact"}],"termid":"GO:1902244"}


id: MONDO:0004293
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A squamous cell carcinoma of the larynx that arises from the supraglottic area. Signs and symptoms include dysphagia, a sensation of foreign body in the throat, and hemoptysis. It spreads to the space anterior to the epiglottis, pyriform sinus, and base of the tongue.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carcinoma of supraglottis","termid":"MONDO:0004357"},{"relation_name":"is_a","term_name":"laryngeal squamous cell carcinoma","termid":"MONDO:0005595"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"supraglottis squamous cell carcinoma","secondary_identifiers":["MEDGEN:152890","UMLS:C0749163","DOID:7587","NCIT:C4945"],"synonyms":[{"name":"epidermoid carcinoma of supraglottis","type":"exact"},{"name":"epidermoid carcinoma of the supraglottis","type":"exact"},{"name":"squamous cell carcinoma of supraglottis","type":"exact"},{"name":"squamous cell carcinoma of the supraglottis","type":"exact"},{"name":"supraglottic epidermoid carcinoma","type":"exact"},{"name":"supraglottic part of larynx squamous cell carcinoma","type":"exact"},{"name":"supraglottic squamous cell carcinoma","type":"exact"},{"name":"supraglottis epidermoid carcinoma","type":"exact"},{"name":"supraglottis squamous cell carcinoma","type":"exact"}],"termid":"MONDO:0004293","xrefs":{"Monarch":{"xref_id":"0004293"}}}


id: PBO:0012217
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-regulates_o_results_in_movement_of","termid":"PBO:0012217"}


id: PBO:0057383
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 548ay","termid":"PBO:0057383"}


id: GO:0050605
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: superoxide + reduced rubredoxin + 2 H+ = H2O2 + rubredoxin.","definition_xrefs":["EC:1.15.1.2","MetaCyc:1.15.1.2-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antioxidant activity","termid":"GO:0016209"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on superoxide radicals as acceptor","termid":"GO:0016721"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"superoxide reductase activity","secondary_identifiers":["RHEA:21324"],"synonyms":[{"name":"desulfoferrodoxin activity","type":"related"},{"name":"neelaredoxin activity","type":"related"},{"name":"rubredoxin:superoxide oxidoreductase activity","type":"related"}],"termid":"GO:0050605"}


id: GO:2001303
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of lipoxin A4. Lipoxin A4 is a C20 hydroxy fatty acid having (5S)-, (6R)- and (15S)-hydroxy groups as well as (7E)- (9E)-, (11Z)- and (13E)-double bonds.","definition_xrefs":["GOC:mw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"unsaturated fatty acid biosynthetic process","termid":"GO:0006636"},{"relation_name":"is_a","term_name":"long-chain fatty acid biosynthetic process","termid":"GO:0042759"},{"relation_name":"is_a","term_name":"lipoxin biosynthetic process","termid":"GO:2001301"},{"relation_name":"is_a","term_name":"lipoxin A4 metabolic process","termid":"GO:2001302"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629","GO:0044281"],"is_obsolete":false,"name":"lipoxin A4 biosynthetic process","synonyms":[{"name":"LXA4 anabolism","type":"exact"},{"name":"LXA4 biosynthesis","type":"exact"},{"name":"LXA4 biosynthetic process","type":"exact"},{"name":"LXA4 formation","type":"exact"},{"name":"LXA4 synthesis","type":"exact"},{"name":"lipoxin A4 anabolism","type":"exact"},{"name":"lipoxin A4 biosynthesis","type":"exact"},{"name":"lipoxin A4 formation","type":"exact"},{"name":"lipoxin A4 synthesis","type":"exact"}],"termid":"GO:2001303"}


id: PBO:0078220
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor beta variable 10-1","termid":"PBO:0078220"}


id: PBO:0064349
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plexin B3","termid":"PBO:0064349"}


id: MONDO:0011226
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal dominant nonsyndromic deafness in which the cause of the disease is a mutation in the POU4F3 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant nonsyndromic hearing loss","termid":"MONDO:0019587"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019497"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0019497"],"is_obsolete":false,"name":"autosomal dominant nonsyndromic hearing loss 15","secondary_identifiers":["GARD:18109","MESH:C566545","DOID:0110546","OMIM:602459","UMLS:C1865366","MEDGEN:355451"],"synonyms":[{"name":"DFNA15","type":"narrow"},{"name":"POU4F3 autosomal dominant nonsyndromic deafness","type":"narrow"},{"name":"autosomal dominant deafness 15","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness 15","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness caused by mutation in POU4F3","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness type 15","type":"narrow"},{"name":"deafness, autosomal dominant 15","type":"narrow"},{"name":"deafness, autosomal dominant type 15","type":"narrow"}],"termid":"MONDO:0011226","xrefs":{"Monarch":{"xref_id":"0011226"}}}


id: PBO:0049444
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase, very large interferon inducible pseudogene 2","termid":"PBO:0049444"}


id: MONDO:0022975
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diaphragmatic agenesis radial aplasia omphalocele","termid":"MONDO:0022975","xrefs":{"Monarch":{"xref_id":"0022975"}}}


id: GO:1902466
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of histone H3-K27 trimethylation.","definition_xrefs":["PMID:19270745","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of histone H3-K27 trimethylation (obsolete GO:1902466)","synonyms":[{"name":"activation of histone H3-K27 trimethylation","type":"narrow"},{"name":"up regulation of histone H3-K27 trimethylation","type":"exact"},{"name":"up-regulation of histone H3-K27 trimethylation","type":"exact"},{"name":"upregulation of histone H3-K27 trimethylation","type":"exact"}],"termid":"GO:1902466"}


id: GO:0006378
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The enzymatic addition of a sequence of 40-200 adenylyl residues at the 3' end of a eukaryotic mRNA primary transcript.","definition_xrefs":["ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete mRNA polyadenylation (obsolete GO:0006378)","termid":"GO:0006378"}


id: PR:O60080
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ATP-dependent RNA helicase DDX56 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO05031"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase dbp9 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1494.06c","secondary_identifiers":["UniProtKB:O60080"],"synonyms":[{"name":"Spom972h-DDX56","type":"exact"}],"termid":"PR:O60080"}


id: PBO:0036089
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-loss_of_viability_following_cellular_response_to_UV","termid":"PBO:0036089"}


id: PATO:0001634
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality of a single physical entity inhering in a bearer by virtue of whether the bearer is essential or indispensable.","definition_xrefs":["WordNet:WordNet"],"direct_ancestors":[{"relation_name":"is_a","term_name":"functionality","termid":"PATO:0001509"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"necessity (continuant)","termid":"PATO:0001634"}


id: GO:1904214
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of iodide transmembrane transport.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:20392814"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of inorganic anion transmembrane transport","termid":"GO:1903797"},{"relation_name":"is_a","term_name":"positive regulation of anion transmembrane transport","termid":"GO:1903961"},{"relation_name":"is_a","term_name":"positive regulation of iodide transport","termid":"GO:1904203"},{"relation_name":"is_a","term_name":"regulation of iodide transmembrane transport","termid":"GO:1904212"},{"relation_name":"positively_regulates","term_name":"iodide transmembrane transport","termid":"GO:1904200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0006810"],"is_obsolete":false,"name":"positive regulation of iodide transmembrane transport","synonyms":[{"name":"activation of iodide transmembrane transport","type":"narrow"},{"name":"up regulation of iodide transmembrane transport","type":"exact"},{"name":"up-regulation of iodide transmembrane transport","type":"exact"},{"name":"upregulation of iodide transmembrane transport","type":"exact"}],"termid":"GO:1904214"}


id: PBO:0113105
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA repair methyltransferase (6-O-methylguanine-DNA methylase); involved in protection against DNA alkylation damage; localizes to the peroxisome in a Pex5p-dependent manner","termid":"PBO:0113105"}


id: FYPO:0001503
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of alpha,alpha-trehalase activity is lower than normal during sporulation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased catalytic activity","termid":"FYPO:0000663"},{"relation_name":"is_a","term_name":"abnormal alpha,alpha-trehalase activity","termid":"FYPO:0001479"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0000707","FYPO:0000654","FYPO:0001985","FYPO:0000652"],"is_obsolete":false,"name":"decreased alpha,alpha-trehalase activity during sporulation","synonyms":[{"name":"decreased neutral trehalase activity during sporulation","type":"exact"},{"name":"decreased trehalase activity during sporulation","type":"broad"},{"name":"reduced alpha,alpha-trehalase activity during sporulation","type":"exact"}],"termid":"FYPO:0001503"}


id: FYPO:0007783
data:
  {"alleles_by_uniquename":{"SJAG_00028:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00028","name":"rga6delta","uniquename":"SJAG_00028:allele-1"},"SJAG_04280:allele-1":{"allele_type":"amino_acid_mutation","description":"T582G","gene_uniquename":"SJAG_04280","name":"wee1-as8","uniquename":"SJAG_04280:allele-1"},"SJAG_04522:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04522","name":"rga4delta","uniquename":"SJAG_04522:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[119516,119521],"is_not":false,"summary":null,"term":"FYPO:0007783"}],"single_locus_phenotype":[{"annotations":[119517],"is_not":false,"summary":null,"term":"FYPO:0007783"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which cellular geometry scaling, by which cells normally maintain a fairly constant length:diameter (width) ratio upon changes in cell volume, does not occur.","definition_xrefs":["PMID:30664646","PomBase:mah"],"direct_ancestors":[{"relation_name":"has_output","term_name":"abnormal vegetative cell morphology","termid":"FYPO:0001118"},{"relation_name":"is_a","term_name":"abnormal cellular process during vegetative growth","termid":"FYPO:0001362"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00028":null,"SJAG_04280":null,"SJAG_04522":null},"genotype_count":3,"genotypes_by_uniquename":{"rga4delta":{"display_name":"rga4delta","display_uniquename":"rga4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]}]},"rga4delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"rga4delta wee1-as8(T582G aa)","display_uniquename":"rga4delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-1","expression":"Not assayed or wild type"}]}]},"rga6delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"rga6delta wee1-as8(T582G aa)","display_uniquename":"rga6delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00028:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_04522","SJAG_04280","SJAG_00028"],"name":"abolished geometry scaling","references_by_uniquename":{"PMID:30664646":null},"single_locus_annotated_genes":["SJAG_04522"],"single_locus_genotype_uniquenames":["rga4delta"],"synonyms":[{"name":"abolished cell geometry scaling","type":"exact"},{"name":"abolished cellular geometry scaling","type":"exact"},{"name":"abolished geometry scaling during mitotic cell cycle","type":"related"},{"name":"abolished geometry scaling during vegetative growth","type":"exact"},{"name":"geometry scaling abolished","type":"exact"}],"termid":"FYPO:0007783","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000126":null,"FYECO:0000137":null,"FYECO:0000338":null,"FYPO:0007783":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: PBO:0074886
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 63B","termid":"PBO:0074886"}


id: SO:0000318
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"First codon to be translated by a ribosome.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"codon","termid":"SO:0000360"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"start_codon","secondary_identifiers":["http://en.wikipedia.org/wiki/Start_codon"],"synonyms":[{"name":"initiation codon","type":"exact"},{"name":"start codon","type":"exact"}],"termid":"SO:0000318"}


id: PBO:0078090
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trafficking protein particle complex 2 pseudogene 7","termid":"PBO:0078090"}


id: MONDO:0041656
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A very serious type of heart attack during which one of the heart’s major arteries (one of the arteries that supplies oxygen and nutrient-rich blood to the heart muscle) is blocked. ST-segment elevation is an abnormality detected on the 12-lead ECG.","direct_ancestors":[{"relation_name":"is_a","term_name":"acute myocardial infarction","termid":"MONDO:0004781"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"ST-elevation myocardial infarction","secondary_identifiers":["MESH:D000072657","SCTID:401303003"],"synonyms":[{"name":"ST segment elevation myocardial infarction","type":"exact"},{"name":"STEMI","type":"exact"},{"name":"acute-ST segment elevation myocardial infarction","type":"exact"}],"termid":"MONDO:0041656","xrefs":{"Monarch":{"xref_id":"0041656"}}}


id: PBO:0066439
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"reticulophagy regulator 1","termid":"PBO:0066439"}


id: PBO:0000215
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"possible splicing","termid":"PBO:0000215"}


id: GO:1901067
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of ferulate.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenol-containing compound catabolic process","termid":"GO:0019336"},{"relation_name":"is_a","term_name":"ferulate metabolic process","termid":"GO:0033494"},{"relation_name":"is_a","term_name":"monocarboxylic acid catabolic process","termid":"GO:0072329"},{"relation_name":"is_a","term_name":"olefinic compound catabolic process","termid":"GO:0120256"},{"relation_name":"is_a","term_name":"ether catabolic process","termid":"GO:1901502"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"ferulate catabolic process","synonyms":[{"name":"ferulate breakdown","type":"exact"},{"name":"ferulate catabolism","type":"exact"},{"name":"ferulate degradation","type":"exact"}],"termid":"GO:1901067"}


id: PBO:0067220
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 288, pseudogene","termid":"PBO:0067220"}


id: PBO:0066452
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"REXO1 like 4, pseudogene","termid":"PBO:0066452"}


id: PBO:0035720
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H3-K9_acetylation_at_protein_coding_gene_during_vegetative_growth","termid":"PBO:0035720"}


id: PBO:0069757
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1040, pseudogene","termid":"PBO:0069757"}


id: MONDO:0000351
data:
  {"annotated_genes":["SJAG_01070","SJAG_03556"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85960],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0100255"},{"annotations":[87237],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013404"}]},"cv_name":"mondo","definition":"An inherited metabolic disease that is has its basis in the disruption of methionine catabolic process.","definition_xrefs":["MONDO:patterns/inborn_metabolic"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn disorder of methionine cycle and sulfur amino acid metabolism","termid":"MONDO:0019222"},{"relation_name":"is_a","term_name":"inborn disorder of aspartate family metabolism","termid":"MONDO:0037938"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01070":null,"SJAG_03556":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004736"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004736"],"is_obsolete":false,"name":"disorder of methionine catabolism","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C4048705","MEDGEN:887708","DOID:0050544","NANDO:2200475","SCTID:43123004","HP:0003235"],"synonyms":[{"name":"hypermethioninemia","type":"exact"},{"name":"inborn error of methionine catabolic process","type":"exact"},{"name":"inborn methionine catabolic process disorder","type":"exact"},{"name":"rare inborn error of methionine catabolic process","type":"exact"}],"termid":"MONDO:0000351","terms_by_termid":{"MONDO:0013404":null,"MONDO:0100255":null},"xrefs":{"Monarch":{"xref_id":"0000351"}}}


id: PBO:0075888
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 pseudogene 1","termid":"PBO:0075888"}


id: MONDO:0014867
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Spinocerebellar ataxia type 43 is a rare autosomal dominant cerebellar ataxia type I disorder characterized by late adult-onset of slowly progressive cerebellar ataxia, typically presenting with balance and gait disturbances, in association with axonal peripheral neuropathy resulting in reduced/absent deep tendon reflexes and sensory impairment. Lower limb pain and amyotrophy may be present, as well as various cerebellar signs, including dysarthria, nystagmus, hypometric saccades and tremor.","definition_xrefs":["Orphanet:497764"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant cerebellar ataxia","termid":"MONDO:0020380"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002039"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0002039","MONDO:0000426","MONDO:0005559"],"is_obsolete":false,"name":"spinocerebellar ataxia 43","secondary_identifiers":["UMLS:C4310763","MEDGEN:934730","DOID:0111745","OMIM:617018","GARD:17917"],"synonyms":[{"name":"MME autosomal dominant cerebellar ataxia","type":"exact"},{"name":"SCA43","type":"exact"},{"name":"autosomal dominant cerebellar ataxia caused by mutation in MME","type":"exact"},{"name":"spinocerebellar ataxia 43","type":"exact"},{"name":"spinocerebellar ataxia 43; SCA43","type":"exact"},{"name":"spinocerebellar ataxia type 43","type":"exact"}],"termid":"MONDO:0014867","xrefs":{"Monarch":{"xref_id":"0014867"}}}


id: PBO:0050431
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein K pseudogene 2","termid":"PBO:0050431"}


id: PBO:0084172
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"High-mobility group (HMG) protein; binds to and remodels nucleosomes; involved in recruiting FACT and other chromatin remodelling complexes to the chromosomes; functionally redundant with Nhp6Ap; required for transcriptional initiation fidelity of some tRNA genes; homologous to mammalian HMGB1 and HMGB2; NHP6B has a paralog, NHP6A, that arose from the whole genome duplication","termid":"PBO:0084172"}


id: MONDO:0060707
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ververi-Brady syndrome","secondary_identifiers":["GARD:18015","OMIM:617982","UMLS:C4693824","MEDGEN:1647785","Orphanet:580940"],"synonyms":[{"name":"VERBRAS","type":"related"},{"name":"Ververi-Brady syndrome","type":"exact"}],"termid":"MONDO:0060707","xrefs":{"Monarch":{"xref_id":"0060707"}}}


id: PBO:0081565
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 490","termid":"PBO:0081565"}


id: PBO:0041794
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"capping actin protein of muscle Z-line subunit alpha 3","termid":"PBO:0041794"}


id: GO:0050879
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any physiological process involved in changing the position of a multicellular organism or an anatomical part of a multicellular organism.","definition_xrefs":["GOC:dph","GOC:mtg_muscle","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal process","termid":"GO:0032501"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"multicellular organismal movement","termid":"GO:0050879"}


id: PBO:0070945
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L18a","termid":"PBO:0070945"}


id: FYPO:0003912
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which double-strand break repair via homologous recombination occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased DNA recombination during vegetative growth","termid":"FYPO:0002340"},{"relation_name":"is_a","term_name":"decreased double-strand break repair during vegetative growth","termid":"FYPO:0003660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000298"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000293","FYPO:0000298","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"decreased double-strand break repair via homologous recombination","synonyms":[{"name":"decreased double-strand break repair via homologous recombination during mitotic cell cycle","type":"related"},{"name":"decreased double-strand break repair via homologous recombination during vegetative growth","type":"exact"},{"name":"reduced double-strand break repair via homologous recombination","type":"exact"}],"termid":"FYPO:0003912"}


id: GO:0120524
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a long-chain 2,3-saturated fatty acyl-CoA + O2 = a long-chain (2E)-enoyl-CoA + H2O2.","definition_xrefs":["RHEA:78851"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyl-CoA oxidase activity","termid":"GO:0003997"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"long-chain fatty acyl-CoA oxidase activity","termid":"GO:0120524"}


id: PBO:0035754
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_actin_filament-based_movement","termid":"PBO:0035754"}


id: PBO:0034135
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_start_location","termid":"PBO:0034135"}


id: PBO:0055899
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat containing 20","termid":"PBO:0055899"}


id: FYPO:0000483
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the rate, or speed, of mitotic recombination is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic recombination","termid":"FYPO:0000481"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0000293"],"is_obsolete":false,"name":"increased rate of mitotic recombination","synonyms":[{"name":"increased rate of mitotic recombination during mitotic cell cycle","type":"related"},{"name":"increased rate of mitotic recombination during vegetative growth","type":"exact"},{"name":"mitotic recombination: increased rate","type":"related"}],"termid":"FYPO:0000483"}


id: MONDO:0013724
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any bacteremia, susceptibility in which the cause of the disease is a mutation in the CISH gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bacteremia, susceptibility","termid":"MONDO:0000108"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bacteremia, susceptibility to, 2","secondary_identifiers":["OMIM:614383","UMLS:C3280647","MEDGEN:482277"],"synonyms":[{"name":"BACTS2","type":"related"},{"name":"CISH bacteremia, susceptibility","type":"exact"},{"name":"bacteremia, susceptibility caused by mutation in CISH","type":"exact"},{"name":"bacteremia, susceptibility to","type":"exact"},{"name":"bacteremia, susceptibility to, 2","type":"exact"},{"name":"bacteremia, susceptibility to, type 2","type":"exact"}],"termid":"MONDO:0013724","xrefs":{"Monarch":{"xref_id":"0013724"}}}


id: MONDO:0003915
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A thymic epithelial neoplasm characterized by the presence of neoplastic large, polygonal epithelial cells with large vesicular nuclei and prominent nucleoli. The neoplastic cells are arranged around perivascular spaces and along septa. Immature T-lymphocytes are also present. It may be associated with myasthenia gravis, pure red cell aplasia, and hypogammaglobulinemia. It is a tumor of moderate malignancy. The majority of cases occur in the anterior mediastinum as Masaoka stage I, stage II, or stage III tumors. Metastatic, stage IV tumors occur less frequently.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thymoma type B","termid":"MONDO:0016974"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"cortical thymoma","secondary_identifiers":["MEDGEN:224762","UMLS:C1266095","DOID:6530","ICDO:8584/1","NCIT:C6888"],"synonyms":[{"name":"cortical thymoma","type":"exact"},{"name":"polygonal cell thymoma","type":"exact"},{"name":"thymoma type B2","type":"exact"},{"name":"thymoma, cortical","type":"exact"}],"termid":"MONDO:0003915","xrefs":{"Monarch":{"xref_id":"0003915"}}}


id: PBO:0047336
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibulin 2","termid":"PBO:0047336"}


id: FYPO:0001434
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of N,N'-(p-xylylidene)bis-aminoguanidine 2HCl than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002682"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000139","FYPO:0001985","FYPO:0002682","FYPO:0000003"],"is_obsolete":false,"name":"resistance to N,N'-(p-xylylidene)bis-aminoguanidine 2HCl","synonyms":[{"name":"resistance to N,N'-(p-xylylidene)bis-aminoguanidine 2HCl during mitotic cell cycle","type":"related"},{"name":"resistance to N,N'-(p-xylylidene)bis-aminoguanidine 2HCl during vegetative growth","type":"exact"},{"name":"resistant to N,N'-(p-xylylidene)bis-aminoguanidine 2HCl","type":"exact"}],"termid":"FYPO:0001434"}


id: GO:0034403
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Recognition of both the 5' and 3'-splice sites and positioning them in the correct alignment with respect to each other so that the second catalytic step of nuclear mRNA splicing can occur.","definition_xrefs":["PMID:9430647","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA 3'-splice site recognition","termid":"GO:0000389"},{"relation_name":"is_a","term_name":"mRNA 5'-splice site recognition","termid":"GO:0000395"},{"relation_name":"part_of","term_name":"generation of catalytic spliceosome for second transesterification step","termid":"GO:0000350"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0016071"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0016071","GO:0044085","GO:0008150","GO:0010467","GO:0065003"],"is_obsolete":false,"name":"alignment of 3' and 5' splice sites of mRNA","synonyms":[{"name":"alignment of 3' and 5' splice sites of nuclear mRNA","type":"exact"}],"termid":"GO:0034403"}


id: PBO:0000831
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PQ loop","termid":"PBO:0000831"}


id: GO:0047459
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-3-aminobutanoyl-CoA = crotonoyl-CoA + NH4.","definition_xrefs":["RHEA:10056","EC:4.3.1.14"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ammonia-lyase activity","termid":"GO:0016841"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"3-aminobutyryl-CoA ammonia-lyase activity","secondary_identifiers":["KEGG_REACTION:R03030","MetaCyc:4.3.1.14-RXN"],"synonyms":[{"name":"L-3-aminobutyryl-CoA ammonia-lyase (crotonoyl-CoA-forming)","type":"related"},{"name":"L-3-aminobutyryl-CoA ammonia-lyase activity","type":"related"},{"name":"L-3-aminobutyryl-CoA deaminase activity","type":"related"}],"termid":"GO:0047459"}


id: MONDO:0010990
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Cd4/CD8 T-cell ratio (obsolete MONDO:0010990)","secondary_identifiers":["OMIM:601083"],"synonyms":[{"name":"Cd4/CD8 T-cell ratio","type":"exact"}],"termid":"MONDO:0010990","xrefs":{"Monarch":{"xref_id":"0010990"}}}


id: PBO:0046650
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endothelial cell adhesion molecule","termid":"PBO:0046650"}


id: PR:Q9P7J9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC24B10.06 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P7J9"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C24B10.06 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC24B10.06","synonyms":[{"name":"Spom972h-SPCC24B10.06","type":"exact"}],"termid":"PR:Q9P7J9"}


id: PBO:0078168
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor beta diversity 1","termid":"PBO:0078168"}


id: GO:0052838
data:
  {"annotated_genes":["SJAG_00827"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[74086],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052837"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving thiazole, a five-membered heterocyclic ring structure containing a sulfur in the 1-position and a nitrogen in the 3-position.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur compound metabolic process","termid":"GO:0006790"},{"relation_name":"is_a","term_name":"oxazole or thiazole metabolic process","termid":"GO:0046484"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00827":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0008150","GO:0006790"],"is_obsolete":false,"name":"thiazole metabolic process","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"thiazole metabolism","type":"exact"}],"termid":"GO:0052838","terms_by_termid":{"GO:0052837":null}}


id: MONDO:1010244
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"L-2-hydroxyglutaricacidemia that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary neurological disease, non-human animal","termid":"MONDO:1012972"},{"relation_name":"is_a","term_name":"inborn errors of metabolism, non-human animal","termid":"MONDO:1012979"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-2-hydroxyglutaricacidemia, non-human animal","secondary_identifiers":["OMIA:001371"],"termid":"MONDO:1010244","xrefs":{"Monarch":{"xref_id":"1010244"}}}


id: PBO:0080865
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Yip1 domain family member 6","termid":"PBO:0080865"}


id: MONDO:0024476
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A epithelial neoplasm that involves the rectum.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rectal neoplasm","termid":"MONDO:0002165"},{"relation_name":"is_a","term_name":"epithelial neoplasm","termid":"MONDO:0005626"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"epithelial neoplasm of rectum","synonyms":[{"name":"rectal epithelial neoplasm","type":"exact"},{"name":"rectal epithelial tumor","type":"exact"},{"name":"rectal epithelial tumour","type":"exact"},{"name":"rectum epithelial neoplasm","type":"exact"}],"termid":"MONDO:0024476","xrefs":{"Monarch":{"xref_id":"0024476"}}}


id: GO:0141101
data:
  {"annotated_genes":["SJAG_03367"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[63640],"is_not":false,"summary":null,"term":"GO:0141101"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: Catalysis of the reaction: S-adenosyl-L-methionine + uridine44 in tRNASer = 2'-O-methyluridine44 in tRNASer + H+ + S-adenosyl-L-homocysteine.","definition_xrefs":["PMID:18025252","RHEA:43100"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA (uridine) methyltransferase activity","termid":"GO:0016300"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03367":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0140101","GO:0016741","GO:0016740","GO:0140098","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"tRNA(Ser) (uridine(44)-2'-O-)-methyltransferase activity","references_by_uniquename":{"GO_REF:0000003":null},"secondary_identifiers":["EC:2.1.1.211","MetaCyc:RXN-12368","Reactome:R-HSA-6788707"],"synonyms":[{"name":"tRNA(Ser) (uracil(44)-2'-O-)-methyltransferase activity","type":"exact"}],"termid":"GO:0141101","terms_by_termid":{"GO:0141101":null}}


id: PBO:0011507
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial pyruvate transmembrane transporter subunit Mpc1","termid":"PBO:0011507"}


id: MONDO:0011988
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A primary immunodeficiency characterized by neutrophilia with severe neutrophil dysfunction, leukocytosis, a predisposition to bacterial infections and poor wound healing, including an absence of pus in infected areas.","definition_xrefs":["Orphanet:183707"],"direct_ancestors":[{"relation_name":"is_a","term_name":"functional neutrophil defect","termid":"MONDO:0015978"},{"relation_name":"is_a","term_name":"T-B- severe combined immunodeficiency","termid":"MONDO:0017855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"neutrophil immunodeficiency syndrome","secondary_identifiers":["MEDGEN:374920","OMIM:608203","UMLS:C1842398","icd11.foundation:1459690929","MESH:C564275","DOID:0112064","GARD:17087","SCTID:723443003"],"synonyms":[{"name":"immunodeficiency 73A with defective neutrophil chemotaxix and leukocytosis","type":"exact"},{"name":"neutrophil immunodeficiency syndrome","type":"exact"}],"termid":"MONDO:0011988","xrefs":{"Monarch":{"xref_id":"0011988"}}}


id: MONDO:0020195
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete excretory apparatus of the lacrimal system anomaly (obsolete MONDO:0020195)","secondary_identifiers":["Orphanet:98605"],"termid":"MONDO:0020195","xrefs":{"Monarch":{"xref_id":"0020195"}}}


id: GO:0039680
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a virus, or part of a virus, towards the host cell nucleus using actin filaments.","definition_xrefs":["UniProtKB-KW:KW-1178","VZ:991"],"direct_ancestors":[{"relation_name":"is_a","term_name":"actin-dependent intracellular transport of virus","termid":"GO:0075520"},{"relation_name":"is_a","term_name":"transport of viral material towards nucleus","termid":"GO:0075606"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"actin-dependent intracellular transport of virus towards nucleus","synonyms":[{"name":"actin-dependent intracellular transport of viral material towards nucleus","type":"exact"},{"name":"actin-dependent inwards viral transport","type":"exact"}],"termid":"GO:0039680"}


id: GO:0031804
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type 7 metabotropic glutamate receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled glutamate receptor binding","termid":"GO:0035256"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"type 7 metabotropic glutamate receptor binding","synonyms":[{"name":"type 7 metabotropic glutamate receptor ligand","type":"narrow"}],"termid":"GO:0031804"}


id: PBO:0079006
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Thr (anticodon CGT) 6-1","termid":"PBO:0079006"}


id: GO:0004623
data:
  {"annotated_genes":["SJAG_02091","SJAG_03204","SJAG_04323","SJAG_02093"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71401,76835,77738,78886],"is_not":false,"summary":null,"term":"GO:0004623"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a 1,2-diacyl-sn-glycero-3-phospholipid + H2O = 1-acyl-sn-glycero-3-phospholipid + a fatty acid. This reaction removes the fatty acid attached to the sn2-position. Substrates include phosphatidylcholine, phosphatidylethanolamine, choline plasmalogen and phosphatides.","definition_xrefs":["RHEA:15801"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipase activity","termid":"GO:0004620"},{"relation_name":"is_a","term_name":"carboxylic ester hydrolase activity","termid":"GO:0052689"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02091":null,"SJAG_02093":null,"SJAG_03204":null,"SJAG_04323":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016788","GO:0016787","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"phospholipase A2 activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-1602368","MetaCyc:RXN-15067","Reactome:R-HSA-1602398","Reactome:R-HSA-1482604","Reactome:R-HSA-1602399","Reactome:R-HSA-1482856","Reactome:R-HSA-1482907","Reactome:R-HSA-1482679","Reactome:R-HSA-1482656","Reactome:R-HSA-1482884","Reactome:R-HSA-1482897","EC:3.1.1.4","Reactome:R-HSA-1482816","Reactome:R-HSA-1482825","Reactome:R-HSA-1482745","Reactome:R-HSA-1482776","Reactome:R-HSA-1482900","Reactome:R-HSA-1602374","Reactome:R-HSA-1602417","MetaCyc:PHOSPHOLIPASE-A2-RXN","Reactome:R-HSA-1482887","GO:0102568","Reactome:R-HSA-1602377","GO:0102567","Reactome:R-HSA-1482771","Reactome:R-HSA-8848484","Reactome:R-HSA-1482868","Reactome:R-HSA-1602446","Reactome:R-HSA-1482778","Reactome:R-HSA-1482759"],"synonyms":[{"name":"cytosolic phospholipase A2 activity","type":"narrow"},{"name":"lecithinase A activity","type":"related"},{"name":"phosphatidase activity","type":"related"},{"name":"phosphatidolipase activity","type":"related"},{"name":"phosphatidylcholine 2-acylhydrolase activity","type":"related"},{"name":"phospholipase A2 activity (consuming 1,2-dipalmitoylphosphatidylcholine)","type":"narrow"},{"name":"phospholipase A2 activity consuming 1,2-dioleoylphosphatidylethanolamine)","type":"narrow"},{"name":"secreted phospholipase A2 activity","type":"narrow"}],"termid":"GO:0004623","terms_by_termid":{"GO:0004623":null}}


id: PBO:0063041
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"partner and localizer of BRCA2","termid":"PBO:0063041"}


id: GO:0004341
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-glucono-1,5-lactone + H2O = D-gluconate.","definition_xrefs":["EC:3.1.1.17"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic ester hydrolase activity","termid":"GO:0052689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0016788","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"gluconolactonase activity","secondary_identifiers":["MetaCyc:GLUCONOLACT-RXN","RHEA:10440"],"synonyms":[{"name":"D-glucono-1,5-lactone lactonohydrolase activity","type":"related"},{"name":"aldonolactonase activity","type":"related"},{"name":"glucono-delta-lactonase activity","type":"related"},{"name":"gulonolactonase activity","type":"related"},{"name":"lactonase activity","type":"broad"}],"termid":"GO:0004341"}


id: GO:0070136
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of beta-1,2-linked oligomannosides, which are found in fungal cell wall phosphopeptidomannan and phospholipomannan.","definition_xrefs":["GOC:mah","PMID:18234669"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mannan biosynthetic process","termid":"GO:0046354"},{"relation_name":"is_a","term_name":"fungal-type cell wall polysaccharide biosynthetic process","termid":"GO:0051278"},{"relation_name":"is_a","term_name":"beta-1,2-oligomannoside metabolic process","termid":"GO:0070135"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0071554","GO:0008150","GO:0005975","GO:0044085"],"is_obsolete":false,"name":"beta-1,2-oligomannoside biosynthetic process","synonyms":[{"name":"beta-1,2-oligomannoside anabolism","type":"exact"},{"name":"beta-1,2-oligomannoside biosynthesis","type":"exact"},{"name":"beta-1,2-oligomannoside formation","type":"exact"},{"name":"beta-1,2-oligomannoside synthesis","type":"exact"}],"termid":"GO:0070136"}


id: PBO:0027275
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_transcription_during_vegetative_growth","termid":"PBO:0027275"}


id: PBO:0041620
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium binding protein 7","termid":"PBO:0041620"}


id: PBO:0116697
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NEIL1 antisense RNA 1","termid":"PBO:0116697"}


id: PBO:0051144
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 3-22 (pseudogene)","termid":"PBO:0051144"}


id: PR:O14029
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A microtubule-associated protein 1A that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02252","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COPII coat assembly protein sec16 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC29B12.07","secondary_identifiers":["UniProtKB:O14029"],"synonyms":[{"name":"Spom972h-MAP1A","type":"exact"},{"name":"protein transport protein sec16 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14029"}


id: MONDO:0024378
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A circadian sleep disorder characterized by bedtime and wake-up time much earlier than normal, although sleep quality is normal.","direct_ancestors":[{"relation_name":"is_a","term_name":"circadian rhythm sleep disorder","termid":"MONDO:0024361"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"circadian rhythm sleep disorder, advanced sleep phase type","secondary_identifiers":["ICD10CM:G47.22","ICD9:327.32","SCTID:31537005","UMLS:C0751758","MEDGEN:199728"],"synonyms":[{"name":"ASPS","type":"broad"},{"name":"advanced sleep phase syndrome","type":"broad"},{"name":"circadian rhythm sleep disorder, advanced sleep phase","type":"related"},{"name":"circadian rhythm sleep disorder, advanced sleep phase type","type":"exact"},{"name":"sleep-wake schedule disorder, advanced phase type","type":"exact"}],"termid":"MONDO:0024378","xrefs":{"Monarch":{"xref_id":"0024378"}}}


id: SO:0001385
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A post translationally modified amino acid feature.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino_acid","termid":"SO:0001237"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"modified_amino_acid_feature","synonyms":[{"name":"modified amino acid feature","type":"exact"}],"termid":"SO:0001385"}


id: MOD:02020
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue amino group with a timnodonoylamino group.","direct_ancestors":[{"relation_name":"is_a","term_name":"N-acylated residue","termid":"MOD:00670"},{"relation_name":"is_a","term_name":"timnodonoylated residue","termid":"MOD:02021"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:01155"}],"interesting_parent_ids":["MOD:01155"],"is_obsolete":false,"name":"N-timnodonoylated residue","termid":"MOD:02020"}


id: PBO:0066457
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"REXO1 like 10, pseudogene","termid":"PBO:0066457"}


id: PBO:0090795
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCAAT-binding factor complex repressor Php4","termid":"PBO:0090795"}


id: MONDO:0003532
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A breast carcinoma characterized by the formation of irregular, finger-like projections of fibrous stroma covered with neoplastic epithelial cells.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"papillary adenocarcinoma","termid":"MONDO:0002512"},{"relation_name":"is_a","term_name":"breast ductal adenocarcinoma","termid":"MONDO:0005590"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"breast papillary carcinoma","secondary_identifiers":["DOID:5592","UMLS:C3812899","MEDGEN:818226","NCIT:C9134"],"synonyms":[{"name":"Papillary breast cancer","type":"exact"},{"name":"breast papillary carcinoma","type":"exact"},{"name":"breast solid papillary carcinoma","type":"narrow"},{"name":"papillary breast carcinoma","type":"exact"},{"name":"papillary carcinoma of breast","type":"exact"},{"name":"papillary carcinoma of the breast","type":"exact"},{"name":"solid papillary carcinoma of the breast","type":"narrow"}],"termid":"MONDO:0003532","xrefs":{"Monarch":{"xref_id":"0003532"}}}


id: GO:0009048
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Compensating for the two-fold variation in X-chromosome:autosome ratios between sexes by heterochromatin formation leading to a global inactivation of all, or most of, the genes on one of the X-chromosomes in the XX sex.","definition_xrefs":["Wikipedia:XY_sex-determination_system","GOC:mr","GOC:pr","GOC:jl","PMID:11498577","PMID:20622855"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sex-chromosome dosage compensation","termid":"GO:0007549"},{"relation_name":"is_a","term_name":"heterochromatin formation","termid":"GO:0031507"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006325"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0006325","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"dosage compensation by inactivation of X chromosome","secondary_identifiers":["Wikipedia:X-inactivation"],"synonyms":[{"name":"Barr body formation","type":"related"},{"name":"X chromosome inactivation","type":"exact"},{"name":"chromosome inactivation","type":"broad"}],"termid":"GO:0009048"}


id: PBO:0034308
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_member","termid":"PBO:0034308"}


id: PBO:0004869
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BAG family molecular chaperone regulator Bag101 (predicted)","termid":"PBO:0004869"}


id: PBO:0081196
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger imprinted 2","termid":"PBO:0081196"}


id: GO:0047845
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: deoxylimonoate + H2O = deoxylimononate D-ring-lactone + H+.","definition_xrefs":["RHEA:14997","EC:3.1.1.46"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic ester hydrolase activity","termid":"GO:0052689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016788","GO:0003674","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"deoxylimonate A-ring-lactonase activity","secondary_identifiers":["KEGG_REACTION:R03803","MetaCyc:DEOXYLIMONATE-A-RING-LACTONASE-RXN"],"synonyms":[{"name":"deoxylimonate A-ring-lactonohydrolase activity","type":"related"}],"termid":"GO:0047845"}


id: PATO:0001106
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001106 relative strain value (obsolete PATO:0001106)","termid":"PATO:0001106"}


id: GO:0032064
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of translation initiation, as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of translational initiation in response to stress","termid":"GO:0032058"},{"relation_name":"is_a","term_name":"positive regulation of translation in response to osmotic stress","termid":"GO:0032062"},{"relation_name":"is_a","term_name":"regulation of translational initiation in response to osmotic stress","termid":"GO:0043561"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of translational initiation in response to osmotic stress","synonyms":[{"name":"activation of translation initiation in response to osmotic stress","type":"narrow"},{"name":"stimulation of translation initiation in response to osmotic stress","type":"narrow"},{"name":"up regulation of translation initiation in response to osmotic stress","type":"exact"},{"name":"up-regulation of translation initiation in response to osmotic stress","type":"exact"},{"name":"upregulation of translation initiation in response to osmotic stress","type":"exact"}],"termid":"GO:0032064"}


id: MONDO:0008130
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ophthalmoplegia-intellectual disability-lingua scrotalis syndrome","secondary_identifiers":["MESH:C563498","OMIM:165150","Orphanet:2743","GARD:3236","UMLS:C1833835","MEDGEN:318972"],"synonyms":[{"name":"Levic Stefanovic Nikolic syndrome","type":"related"},{"name":"Levic-Stefanovic-Nikolic syndrome","type":"exact"},{"name":"ophthalmoplegia, progressive, with scrotal tongue and mental deficiency","type":"related"},{"name":"ophthalmoplegia-intellectual disability-lingua scrotalis syndrome","type":"exact"}],"termid":"MONDO:0008130","xrefs":{"Monarch":{"xref_id":"0008130"}}}


id: GO:0046119
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of 7-methylguanosine, a modified nucleoside that forms a cap at the 5'-terminus of eukaryotic mRNA.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"7-methylguanosine metabolic process","termid":"GO:0008618"},{"relation_name":"is_a","term_name":"guanosine-containing compound catabolic process","termid":"GO:1901069"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0055086"],"is_obsolete":false,"name":"7-methylguanosine catabolic process","synonyms":[{"name":"7-methylguanosine breakdown","type":"exact"},{"name":"7-methylguanosine catabolism","type":"exact"},{"name":"7-methylguanosine degradation","type":"exact"}],"termid":"GO:0046119"}


id: GO:1901282
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of fructoselysine.","definition_xrefs":["GOC:TermGenie","GOC:yaf","UniPathway:UPA00784"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fructosamine biosynthetic process","termid":"GO:0030391"},{"relation_name":"is_a","term_name":"fructoselysine metabolic process","termid":"GO:0030393"},{"relation_name":"is_a","term_name":"carboxylic acid biosynthetic process","termid":"GO:0046394"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"fructoselysine biosynthetic process","synonyms":[{"name":"fructosyllysine anabolism","type":"exact"},{"name":"fructosyllysine biosynthesis","type":"exact"},{"name":"fructosyllysine biosynthetic process","type":"exact"},{"name":"fructosyllysine formation","type":"exact"},{"name":"fructosyllysine synthesis","type":"exact"}],"termid":"GO:1901282"}


id: PATO:0001351
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A density quality which inheres in a bearer by virtue of some influence exerted by the bearer's mass on a given area.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/Area_density"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mass density","termid":"PATO:0001019"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"area density","termid":"PATO:0001351"}


id: _global:realized_by
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"realized_by","termid":"_global:realized_by"}


id: PBO:0113412
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosome-associated co-chaperone; zuotin functions in ribosome biogenesis and as a chaperone for nascent polypeptide chains with Ssz1p and Ssb1/2p; subunit of the ribosome-associated complex (RAC) that stimulates Ssb1/2p ATPase activity to facilitate interaction with nascent polypeptide chains emerging from the ribosome exit tunnel; regulates translation upon inhibition of TORC1; contains a DnaJ domain; human gene DNAJC2 partially complements the yeast zuo1 null mutant","termid":"PBO:0113412"}


id: GO:1904831
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of aortic smooth muscle cell differentiation.","definition_xrefs":["GO_REF:0000058","GOC:rph","GOC:BHF_miRNA","PMID:22034194","GOC:TermGenie","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of aortic smooth muscle cell differentiation","termid":"GO:1904829"},{"relation_name":"is_a","term_name":"positive regulation of vascular associated smooth muscle cell differentiation","termid":"GO:1905065"},{"relation_name":"positively_regulates","term_name":"aortic smooth muscle cell differentiation","termid":"GO:0035887"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of aortic smooth muscle cell differentiation","synonyms":[{"name":"activation of aortic smooth muscle cell differentiation","type":"narrow"},{"name":"up regulation of aortic smooth muscle cell differentiation","type":"exact"},{"name":"up-regulation of aortic smooth muscle cell differentiation","type":"exact"},{"name":"upregulation of aortic smooth muscle cell differentiation","type":"exact"}],"termid":"GO:1904831"}


id: PBO:0028976
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_GSNO","termid":"PBO:0028976"}


id: GO:0045116
data:
  {"annotated_genes":["SJAG_00033","SJAG_00878","SJAG_01018","SJAG_03950","SJAG_05297","SJAG_00615"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71725,73089,74567,75302,79911,89570],"is_not":false,"summary":null,"term":"GO:0045116"}]},"cv_name":"biological_process","definition":"Covalent attachment of the ubiquitin-like protein NEDD8 (RUB1) to another protein.","definition_xrefs":["PMID:11698580"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification by small protein conjugation","termid":"GO:0032446"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00033":null,"SJAG_00615":null,"SJAG_00878":null,"SJAG_01018":null,"SJAG_03950":null,"SJAG_05297":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0070647"}],"interesting_parent_ids":["GO:0070647","GO:0008150"],"is_obsolete":false,"name":"protein neddylation","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0019943"],"synonyms":[{"name":"RUB1-protein conjugation","type":"exact"}],"termid":"GO:0045116","terms_by_termid":{"GO:0045116":null}}


id: _global:gene_product_of
data:
  {"annotation_feature_type":"gene","cv_name":"go/extensions/gorel","definition":"definition \\\"x has gene product of y if and only if y is a gene (SO:0000704) that participates in some gene expression process (GO:0010467) where the output of that process is either y or something that is ribosomally translated from x\\\"","direct_ancestors":[{"relation_name":"is_a","term_name":"genomically_related_to","termid":"_global:genomically_related_to"},{"relation_name":"is_a","term_name":"go_annotation_extension_relation","termid":"_global:go_annotation_extension_relation"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gene_product_of","secondary_identifiers":["GOREL:0001028","RO:0002204"],"termid":"_global:gene_product_of"}


id: PBO:0059463
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MSH2 overlapping transcript 1","termid":"PBO:0059463"}


id: PBO:0081759
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 689","termid":"PBO:0081759"}


id: FYPO:0007107
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which microtubule cytoskeleton organization is normal (i.e. indistinguishable from wild type) during meiosis I. Microtubule cytoskeleton organization is the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins.","definition_xrefs":["GO:0000226","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular component organization","termid":"FYPO:0006003"},{"relation_name":"is_a","term_name":"normal cellular process during meiotic cell cycle","termid":"FYPO:0007277"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal microtubule cytoskeleton organization during meiosis I","synonyms":[{"name":"normal microtubule cytoskeleton organisation during meiosis I","type":"exact"},{"name":"normal microtubule cytoskeleton organization during first meiotic nuclear division","type":"exact"},{"name":"normal microtubule dynamics during meiosis I","type":"exact"},{"name":"normal microtubule organization during meiosis I","type":"related"}],"termid":"FYPO:0007107"}


id: PR:Q92373
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A replication protein A 32 kDa subunit that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04720","PANTHER:PTHR13989:SF7","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"replication factor A protein 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1753.01c","secondary_identifiers":["UniProtKB:Q92373"],"synonyms":[{"name":"Spom972h-RPA2","type":"exact"},{"name":"single-stranded DNA-binding protein P30 subunit (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q92373"}


id: PBO:0091701
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"is not complemented by human ATR","termid":"PBO:0091701"}


id: MONDO:0000243
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A dermatophyte infection of the hair that infects the hair surface.","definition_xrefs":["Wikipedia:Exothrix"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dermatophytosis","termid":"MONDO:0004678"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"ectothrix infectious disease","secondary_identifiers":["DOID:0050097"],"termid":"MONDO:0000243","xrefs":{"Monarch":{"xref_id":"0000243"}}}


id: GO:0033342
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of collagen binding.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of binding","termid":"GO:0051100"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of collagen binding","synonyms":[{"name":"down regulation of collagen binding","type":"exact"},{"name":"down-regulation of collagen binding","type":"exact"},{"name":"downregulation of collagen binding","type":"exact"},{"name":"inhibition of collagen binding","type":"narrow"}],"termid":"GO:0033342"}


id: PBO:0058032
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4253","termid":"PBO:0058032"}


id: FYPO:0007125
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitotic sister chromatid separation begins when the mitotic spindle is not present.","definition_xrefs":["PMID:9864354","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic sister chromatid separation","termid":"FYPO:0000670"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0000641"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000337","FYPO:0000631","FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0000641"],"is_obsolete":false,"name":"mitotic sister chromatid separation in absence of mitotic spindle","synonyms":[{"name":"mitotic chromosome separation in absence of mitotic spindle","type":"exact"},{"name":"mitotic sister chromatid separation in absence of mitotic spindle during vegetative growth","type":"exact"},{"name":"mitotic sister chromatid separation without mitotic spindle","type":"exact"},{"name":"sister chromatid separation in absence of spindle during mitotic cell cycle","type":"related"}],"termid":"FYPO:0007125"}


id: PBO:0044401
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 2 subfamily C member 63, pseudogene","termid":"PBO:0044401"}


id: PBO:0078020
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha joining 10","termid":"PBO:0078020"}


id: MONDO:0007948
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"Marfan syndrome","termid":"MONDO:0007947"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"marfanoid hypermobility syndrome","secondary_identifiers":["MESH:C531742","MEDGEN:120632","UMLS:C0268365","OMIM:154750"],"synonyms":[{"name":"marfanoid hypermobility syndrome","type":"exact"}],"termid":"MONDO:0007948","xrefs":{"Monarch":{"xref_id":"0007948"}}}


id: PBO:0044644
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DCST1 antisense RNA 1","termid":"PBO:0044644"}


id: PBO:0005703
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-NF-X1 zinc finger","termid":"PBO:0005703"}


id: GO:1900060
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of a ceramide biosynthetic process.","definition_xrefs":["GOC:TermGenie","PMID:15302821"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of amide metabolic process","termid":"GO:0034249"},{"relation_name":"is_a","term_name":"negative regulation of sphingolipid biosynthetic process","termid":"GO:0090155"},{"relation_name":"is_a","term_name":"regulation of ceramide biosynthetic process","termid":"GO:2000303"},{"relation_name":"negatively_regulates","term_name":"ceramide biosynthetic process","termid":"GO:0046513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"negatively_regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"negative regulation of ceramide biosynthetic process","synonyms":[{"name":"down regulation of ceramide anabolism","type":"exact"},{"name":"down regulation of ceramide biosynthesis","type":"exact"},{"name":"down regulation of ceramide biosynthetic process","type":"related"},{"name":"down regulation of ceramide formation","type":"exact"},{"name":"down regulation of ceramide synthesis","type":"exact"},{"name":"down-regulation of ceramide anabolism","type":"exact"},{"name":"down-regulation of ceramide biosynthesis","type":"exact"},{"name":"down-regulation of ceramide biosynthetic process","type":"related"},{"name":"down-regulation of ceramide formation","type":"exact"},{"name":"down-regulation of ceramide synthesis","type":"exact"},{"name":"downregulation of ceramide anabolism","type":"exact"},{"name":"downregulation of ceramide biosynthesis","type":"exact"},{"name":"downregulation of ceramide biosynthetic process","type":"related"},{"name":"downregulation of ceramide formation","type":"exact"},{"name":"downregulation of ceramide synthesis","type":"exact"},{"name":"inhibition of ceramide anabolism","type":"exact"},{"name":"inhibition of ceramide biosynthesis","type":"exact"},{"name":"inhibition of ceramide biosynthetic process","type":"related"},{"name":"inhibition of ceramide formation","type":"exact"},{"name":"inhibition of ceramide synthesis","type":"exact"},{"name":"negative regulation of ceramide anabolism","type":"exact"},{"name":"negative regulation of ceramide biosynthesis","type":"exact"},{"name":"negative regulation of ceramide formation","type":"exact"},{"name":"negative regulation of ceramide synthesis","type":"exact"}],"termid":"GO:1900060"}


id: GO:0103062
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: ATP(4-) + H2O + a cis-keto-C60-meroacyl-[acp] = diphosphoric acid + a cis-keto-meroacyl-adenylate + a holo-[acyl-carrier protein].","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete cis-keto-C60-meroacyl-AMP ligase activity (obsolete GO:0103062)","termid":"GO:0103062"}


id: PBO:0066098
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RASAL2 antisense RNA 1","termid":"PBO:0066098"}


id: MONDO:0019153
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Goossens-Devriendt syndrome is characterized by intrauterine growth retardation, a congenital heart defect, postaxial polydactyly, a brain malformation, abnormal hair with temporal balding, and marked facial dysmorphism. It has been reported in two siblings from unrelated parents. One of the siblings died and the surviving patient showed postnatal growth retardation and severe developmental delay.","definition_xrefs":["Orphanet:75389"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"excluded_subClassOf","term_name":"heart disorder","termid":"MONDO:0005267"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"brain malformation-congenital heart disease-postaxial polydactyly syndrome","secondary_identifiers":["SCTID:717943008","UMLS:C4303545","MEDGEN:929214","GARD:18926"],"synonyms":[{"name":"Goossens-Devriendt syndrome","type":"exact"}],"termid":"MONDO:0019153","xrefs":{"Monarch":{"xref_id":"0019153"}}}


id: PBO:0030820
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_sodium_export","termid":"PBO:0030820"}


id: PBO:0046301
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"engrailed homeobox 1","termid":"PBO:0046301"}


id: PBO:0052605
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kaptin, actin binding protein","termid":"PBO:0052605"}


id: MONDO:0045054
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disorder either associated with an increased risk for malignant transformation (e.g., intraepithelial neoplasia, leukoplakia, dysplastic nevus, myelodysplastic syndrome) or that develops as a result of the presence of an existing malignant neoplasm (e.g., paraneoplastic syndrome).","definition_xrefs":["NCIT:C8278"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cancer or benign tumor","termid":"MONDO:0045024"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cancer-related condition","secondary_identifiers":["MEDGEN:128925","UMLS:C0280950"],"synonyms":[{"name":"cancer related problem/condition","type":"exact"},{"name":"cancer-related condition","type":"exact"},{"name":"cancer-related problem or condition","type":"exact"},{"name":"oncologic complications","type":"exact"},{"name":"problem/condition, cancer related","type":"exact"},{"name":"problem/condition, cancer-related","type":"exact"}],"termid":"MONDO:0045054","xrefs":{"Monarch":{"xref_id":"0045054"}}}


id: GO:0070099
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of a chemokine-mediated signaling pathway.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytokine-mediated signaling pathway","termid":"GO:0001959"},{"relation_name":"is_a","term_name":"regulation of G protein-coupled receptor signaling pathway","termid":"GO:0008277"},{"relation_name":"regulates","term_name":"chemokine-mediated signaling pathway","termid":"GO:0070098"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of chemokine-mediated signaling pathway","synonyms":[{"name":"regulation of chemokine-mediated signalling pathway","type":"exact"}],"termid":"GO:0070099"}


id: PBO:0041451
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 10 open reading frame 53","termid":"PBO:0041451"}


id: GO:0032099
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that reduces appetite.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of response to food","termid":"GO:0032096"},{"relation_name":"is_a","term_name":"regulation of appetite","termid":"GO:0032098"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of appetite","synonyms":[{"name":"appetite suppression","type":"related"},{"name":"down regulation of appetite","type":"exact"},{"name":"down-regulation of appetite","type":"exact"},{"name":"downregulation of appetite","type":"exact"},{"name":"inhibition of appetite","type":"narrow"},{"name":"negative regulation of hunger","type":"related"}],"termid":"GO:0032099"}


id: PBO:0062471
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily E member 162 pseudogene","termid":"PBO:0062471"}


id: PBO:0014584
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"electron transfer flavoprotein alpha subunit EtfA (predicted)","termid":"PBO:0014584"}


id: PBO:0080535
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WASHC5 antisense RNA 1","termid":"PBO:0080535"}


id: PBO:0081676
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 597","termid":"PBO:0081676"}


id: PBO:0042518
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin dependent kinase 1","termid":"PBO:0042518"}


id: PBO:0108927
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCSER2 pseudogene 1","termid":"PBO:0108927"}


id: MONDO:0100507
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Temple syndrome is a less specific phenotype including intrauterine and postnatal growth restriction, hypotonia, feeding difficulties in infancy, truncal obesity, and small feet and hands. Temple syndrome is caused by defects or absence of paternally derived imprinting signals (including maternal UPD14).","definition_xrefs":["PMID:34760887"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multiple congenital anomalies due to 14q32.2 imprinting defect","termid":"MONDO:0100499"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"multiple congenital anomalies due to 14q32.2 paternally expressed gene defect","synonyms":[{"name":"Temple syndrome","type":"broad"}],"termid":"MONDO:0100507","xrefs":{"Monarch":{"xref_id":"0100507"}}}


id: PBO:0003913
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-3-methyladenine glycosidase Mag2","termid":"PBO:0003913"}


id: PBO:0053930
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1229","termid":"PBO:0053930"}


id: PBO:0027987
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination,_without_cell_division,_cell_enlarged_around_nucleus","termid":"PBO:0027987"}


id: MONDO:0042727
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A teratoma that is found at the base of the coccyx. It is the most commonly seen tumor in newborns.","definition_xrefs":["NCIT:C99055"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vertebral column disorder","termid":"MONDO:0000812"},{"relation_name":"is_a","term_name":"teratoma","termid":"MONDO:0002601"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sacrococcygeal teratoma","secondary_identifiers":["NORD:1685","GARD:319","SCTID:281561000","NANDO:2200816","HP:0030736","Orphanet:494421","MEDGEN:107852","UMLS:C0559459","NANDO:2201287","NANDO:2100216"],"synonyms":[{"name":"pre-sacral teratoma","type":"exact"},{"name":"presacral teratoma","type":"exact"},{"name":"sacrococcygeal teratoma","type":"exact"}],"termid":"MONDO:0042727","xrefs":{"Monarch":{"xref_id":"0042727"}}}


id: MONDO:0015160
data:
  {"annotated_genes":["SJAG_03453","SJAG_02279","SJAG_02317","SJAG_01181","SJAG_02394","SJAG_02607","SJAG_04270","SJAG_02074","SJAG_03126","SJAG_02399","SJAG_02923","SJAG_00112","SJAG_02342","SJAG_03396","SJAG_01267","SJAG_01354","SJAG_05245","SJAG_03927","SJAG_01521","SJAG_02536","SJAG_00327","SJAG_00993"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85937],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008726"},{"annotations":[85412],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0020667"},{"annotations":[85828],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007301"},{"annotations":[86180],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009143"},{"annotations":[87221],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013428"},{"annotations":[87223],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013430"},{"annotations":[87222],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013431"},{"annotations":[87224],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013432"},{"annotations":[86458],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014894"},{"annotations":[85739],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0033046"},{"annotations":[85849],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0054593"},{"annotations":[87582,87584,87583],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008104"},{"annotations":[86102],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0033669"},{"annotations":[86972],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012371"},{"annotations":[86769],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013186"},{"annotations":[85840,85839],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0054588"},{"annotations":[87416],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010572"},{"annotations":[87577],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0800042"},{"annotations":[85565],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0044634"},{"annotations":[85955],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014848"},{"annotations":[87455],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008644"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome","termid":"MONDO:0019042"}],"gene_count":22,"genes_by_uniquename":{"SJAG_00112":null,"SJAG_00327":null,"SJAG_00993":null,"SJAG_01181":null,"SJAG_01267":null,"SJAG_01354":null,"SJAG_01521":null,"SJAG_02074":null,"SJAG_02279":null,"SJAG_02317":null,"SJAG_02342":null,"SJAG_02394":null,"SJAG_02399":null,"SJAG_02536":null,"SJAG_02607":null,"SJAG_02923":null,"SJAG_03126":null,"SJAG_03396":null,"SJAG_03453":null,"SJAG_03927":null,"SJAG_04270":null,"SJAG_05245":null},"genotype_count":0,"is_obsolete":false,"name":"multiple congenital anomalies/dysmorphic syndrome-variable intellectual disability syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["Orphanet:102284"],"synonyms":[{"name":"MCA/variable MR","type":"exact"},{"name":"multiple congenital anomalies-variable intellectual disability with or without dysmorphism syndrome","type":"exact"}],"termid":"MONDO:0015160","terms_by_termid":{"MONDO:0007301":null,"MONDO:0008104":null,"MONDO:0008644":null,"MONDO:0008726":null,"MONDO:0009143":null,"MONDO:0010572":null,"MONDO:0012371":null,"MONDO:0013186":null,"MONDO:0013428":null,"MONDO:0013430":null,"MONDO:0013431":null,"MONDO:0013432":null,"MONDO:0014848":null,"MONDO:0014894":null,"MONDO:0020667":null,"MONDO:0033046":null,"MONDO:0033669":null,"MONDO:0044634":null,"MONDO:0054588":null,"MONDO:0054593":null,"MONDO:0800042":null},"xrefs":{"Monarch":{"xref_id":"0015160"}}}


id: FYECO:0000239
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","direct_ancestors":[{"relation_name":"is_a","term_name":"grouping condition combinations","termid":"FYECO:0000238"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"grouping starvation and timing","termid":"FYECO:0000239"}


id: GO:0070159
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of coupling threonine to threonyl-tRNA in a mitochondrion, catalyzed by threonyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.","definition_xrefs":["GOC:mah","GOC:mcc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"threonyl-tRNA aminoacylation","termid":"GO:0006435"},{"relation_name":"is_a","term_name":"tRNA aminoacylation for mitochondrial protein translation","termid":"GO:0070127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"part_of","termid":"GO:0140053"},{"rel_name":"is_a","termid":"GO:0006399"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0140053","GO:0006520","GO:0008150","GO:0010467","GO:0006399"],"is_obsolete":false,"name":"mitochondrial threonyl-tRNA aminoacylation","termid":"GO:0070159"}


id: GO:0080120
data:
  {"annotated_genes":["SJAG_00730","SJAG_03396"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[70476,75282],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071586"}]},"cv_name":"biological_process","definition":"A series of specific posttranslational modifications to the CAAX box region of CAAX box proteins. CAAX box proteins are eukaryotic proteins that contain a CAAX motif where the C is a cysteine, the two A residues are aliphatic amino acids and the X can be one of several amino acids. The CAAX-box proteins undergo three sequential, enzymatic, post-translational modifications essential to their targeting: First, the proteins are prenylated by one of two prenyltransferases called farnesyltransferase and geranylgeranyltransferase-I. Prenylation results in the covalent attachment of either farnesyl or geranylgeranyl isoprenoid groups to the cysteine in the CAAX box motif. Prenylation is followed by proteolytic removal of the last three amino acids of the protein (AAX). Finally, the newly exposed carboxylate group of the isoprenylcysteine is methylated by an ER-associated prenyl-dependent carboxylmethyltransferase.","definition_xrefs":["PMID:17114793","PMID:12039957","PMID:18641086"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein maturation","termid":"GO:0051604"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00730":null,"SJAG_03396":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051604"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0051604","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"CAAX-box protein maturation","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"CAAX-box protein processing","type":"related"},{"name":"farnesylated protein maturation","type":"related"}],"termid":"GO:0080120","terms_by_termid":{"GO:0071586":null}}


id: MONDO:0010125
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Upper limb defect - eye and ear abnormalities syndrome associates upper limb defects (hypoplastic thumb with hypoplasia of the metacarpal bone and phalanges and delayed bone maturation), developmental delay, central hearing loss, unilateral poorly developed antihelix, bilateral choroid coloboma and growth retardation.","definition_xrefs":["Orphanet:2489"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"upper limb defect-eye and ear abnormalities syndrome","secondary_identifiers":["OMIM:274205","MESH:C564769","GARD:16602","UMLS:C1848816","MEDGEN:376448"],"synonyms":[{"name":"thumb, hypoplastic, with choroid coloboma, poorly developed antihelix, and deafness","type":"related"}],"termid":"MONDO:0010125","xrefs":{"Monarch":{"xref_id":"0010125"}}}


id: GO:0016265
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A permanent cessation of all vital functions: the end of life; can be applied to a whole organism or to a part of an organism.","definition_xrefs":["GOC:mtg_apoptosis","GOC:mah","ISBN:0877797099"],"gene_count":0,"genotype_count":0,"name":"obsolete death (obsolete GO:0016265)","secondary_identifiers":["Wikipedia:Death"],"termid":"GO:0016265"}


id: PR:O74313
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC15D4.08c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74313"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C15D4.08c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC15D4.08c","synonyms":[{"name":"Spom972h-SPBC15D4.08c","type":"exact"}],"termid":"PR:O74313"}


id: PBO:0070044
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6atac small nuclear","termid":"PBO:0070044"}


id: GO:0051000
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the activity of the enzyme nitric-oxide synthase.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of monooxygenase activity","termid":"GO:0032770"},{"relation_name":"is_a","term_name":"regulation of nitric-oxide synthase activity","termid":"GO:0050999"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of nitric-oxide synthase activity","synonyms":[{"name":"NOS activator","type":"exact"},{"name":"activation of nitric-oxide synthase activity","type":"narrow"},{"name":"nitric-oxide synthase activator","type":"exact"},{"name":"positive regulation of NOS activity","type":"exact"},{"name":"stimulation of nitric-oxide synthase activity","type":"narrow"},{"name":"up regulation of nitric-oxide synthase activity","type":"exact"},{"name":"up-regulation of nitric-oxide synthase activity","type":"exact"},{"name":"upregulation of nitric-oxide synthase activity","type":"exact"}],"termid":"GO:0051000"}


id: PBO:0075154
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nuclear ribonucleoprotein polypeptide C pseudogene 10","termid":"PBO:0075154"}


id: PBO:0053611
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 645","termid":"PBO:0053611"}


id: MONDO:0014836
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Charcot-Marie-Tooth disease in which the cause of the disease is a mutation in the NEFH gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Charcot-Marie-Tooth disease type 2","termid":"MONDO:0018993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244"],"is_obsolete":false,"name":"Charcot-Marie-Tooth disease axonal type 2CC","secondary_identifiers":["UMLS:C4310790","OMIM:616924","DOID:0110180","MEDGEN:934757"],"synonyms":[{"name":"CMT2CC","type":"exact"},{"name":"Charcot-Marie-Tooth disease axonal type 2CC","type":"exact"},{"name":"Charcot-Marie-Tooth disease caused by mutation in NEFH","type":"exact"},{"name":"Charcot-Marie-Tooth disease, axonal, type 2CC","type":"related"},{"name":"Charcot-Marie-Tooth disease, axonal, type 2cc","type":"exact"},{"name":"Charcot-Marie-Tooth neuropathy type 2CC","type":"exact"},{"name":"Charcot-Marie-Tooth neuropathy, type 2Cc","type":"related"},{"name":"NEFH Charcot-Marie-Tooth disease","type":"exact"}],"termid":"MONDO:0014836","xrefs":{"Monarch":{"xref_id":"0014836"}}}


id: MONDO:0015132
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete immunodeficiency predominantly affecting antibody production (obsolete MONDO:0015132)","secondary_identifiers":["Orphanet:101977","icd11.foundation:85074116"],"termid":"MONDO:0015132","xrefs":{"Monarch":{"xref_id":"0015132"}}}


id: GO:0033771
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a flavanone + O2 + reduced [NADPH--hemoprotein reductase] = a 2-hydroxyflavanone + H+ + H2O + oxidized [NADPH--hemoprotein reductase].","definition_xrefs":["RHEA:57584","EC:1.14.14.162"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen","termid":"GO:0016712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"flavanone 2-hydroxylase activity","secondary_identifiers":["KEGG_REACTION:R07198","MetaCyc:RXN-19645"],"synonyms":[{"name":"licodione synthase activity","type":"narrow"}],"termid":"GO:0033771"}


id: PBO:0029261
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_level_of_transmembrane_transport_gene_mRNA_during_vegetative_growth","termid":"PBO:0029261"}


id: MONDO:0011843
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any hypertrophic cardiomyopathy in which the cause of the disease is a mutation in the TCAP gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"qualitative or quantitative defects of telethonin","termid":"MONDO:0016192"},{"relation_name":"is_a","term_name":"familial dilated cardiomyopathy","termid":"MONDO:0016333"},{"relation_name":"is_a","term_name":"familial hypertrophic cardiomyopathy","termid":"MONDO:0024573"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"hypertrophic cardiomyopathy 25","secondary_identifiers":["UMLS:C4225408","DOID:0110328","MESH:C564388","OMIM:607487","MEDGEN:895360"],"synonyms":[{"name":"CMH25","type":"exact"},{"name":"TCAP hypertrophic cardiomyopathy","type":"exact"},{"name":"Tcap hypertrophic cardiomyopathy","type":"exact"},{"name":"cardiomyopathy familial hypertrophic 25","type":"exact"},{"name":"cardiomyopathy, familial hypertrophic, 25","type":"related"},{"name":"cardiomyopathy, familial hypertrophic, type 25","type":"exact"},{"name":"cardiomyopathy, hypertrophic, 25","type":"exact"},{"name":"hypertrophic cardiomyopathy caused by mutation in TCAP","type":"exact"},{"name":"hypertrophic cardiomyopathy type 25","type":"exact"}],"termid":"MONDO:0011843","xrefs":{"Monarch":{"xref_id":"0011843"}}}


id: GO:0036400
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a short neuropeptide F and transmitting the signal within the cell to initiate a change in cell activity. Short neuropeptide F is an arthropod peptide of less than 28 residues (as small as 8-10 residues in some species) with a C-terminal RFamide or LRFamide.","definition_xrefs":["GOC:ha","PMID:16330127","PMID:21440021"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuropeptide receptor activity","termid":"GO:0008188"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"short neuropeptide F receptor activity","synonyms":[{"name":"sNPF receptor activity","type":"exact"}],"termid":"GO:0036400"}


id: MONDO:1012111
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hypoadrenocorticism, non-human animal","termid":"MONDO:1011675"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypoadrenocorticism, horse","secondary_identifiers":["OMIA:000519-9796"],"termid":"MONDO:1012111","xrefs":{"Monarch":{"xref_id":"1012111"}}}


id: PBO:0081949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc and ring finger 2 pseudogene 3","termid":"PBO:0081949"}


id: PBO:0052483
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kelch domain containing 8B","termid":"PBO:0052483"}


id: PBO:0085291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phenylacrylic acid decarboxylase; decarboxylates aromatic carboxylic acids to the corresponding vinyl derivatives; confers resistance to cinnamic acid; overexpression of both Pad1p and Fdc1p increases cinnamic acid decarboxylase activity due to the Pad1p-catalyzed formation of a diffusible cofactor required for Fdc1p activity; contains mRNA binding activity; homolog of E. coli UbiX","termid":"PBO:0085291"}


id: PBO:0090739
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNARE Bos1","termid":"PBO:0090739"}


id: MONDO:0015678
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Meyer dysplasia of the femoral head is a mild localized form of skeletal dysplasia characterized by delayed, irregular ossification of femoral capital epiphysis.","definition_xrefs":["Orphanet:168621"],"direct_ancestors":[{"relation_name":"is_a","term_name":"skeletal dysplasia","termid":"MONDO:0018230"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dysplasia of head of femur, Meyer type","secondary_identifiers":["UMLS:C4274970","GARD:20098","icd11.foundation:381445908","MEDGEN:909364","SCTID:715861004"],"termid":"MONDO:0015678","xrefs":{"Monarch":{"xref_id":"0015678"}}}


id: PBO:0078868
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TRPM2 antisense RNA","termid":"PBO:0078868"}


id: MONDO:0800392
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inherited retinopathy caused by bi-allelic variants in the GNAT2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited retinal dystrophy","termid":"MONDO:0019118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"GNAT2-related retinopathy","termid":"MONDO:0800392","xrefs":{"Monarch":{"xref_id":"0800392"}}}


id: PBO:0114068
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3129","termid":"PBO:0114068"}


id: GO:0075505
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Viral penetration into the host nucleus where a viral capsid passes intact through the host nuclear pore complex (NPC).","definition_xrefs":["VZ:989","PMID:22929056"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral penetration into host nucleus","termid":"GO:0075732"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"entry of intact viral capsid into host nucleus through nuclear pore complex","termid":"GO:0075505"}


id: PBO:0078297
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Asp (anticodon GTC) 2-2","termid":"PBO:0078297"}


id: PR:O13936
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A transcription elongation factor SPT5 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00424","PANTHER:PTHR11125:SF7","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription elongation factor spt5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23C4.19","secondary_identifiers":["UniProtKB:O13936"],"synonyms":[{"name":"Spom972h-SUPT5H","type":"exact"},{"name":"chromatin elongation factor spt5 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13936"}


id: PBO:0012028
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U5 snRNP subunit Snu40 (predicted)","termid":"PBO:0012028"}


id: MONDO:1012120
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hypothyroidism and dwarfism, non-human animal","termid":"MONDO:1011945"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypothyroidism and dwarfism, Sumatran tiger","secondary_identifiers":["OMIA:000537-9695"],"termid":"MONDO:1012120","xrefs":{"Monarch":{"xref_id":"1012120"}}}


id: SO:0001238
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The tanscription start site that is most frequently used for transcription of a gene.","direct_ancestors":[{"relation_name":"is_a","term_name":"TSS","termid":"SO:0000315"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major_TSS","synonyms":[{"name":"major TSS","type":"exact"},{"name":"major transcription start site","type":"exact"}],"termid":"SO:0001238"}


id: PBO:0060028
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND4 pseudogene 16","termid":"PBO:0060028"}


id: GO:0140008
data:
  {"annotated_genes":["SJAG_00545"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[108243],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990889"}]},"cv_name":"molecular_function","definition":"A histone reader that specifically binds either to an unmodified histone H4 or a form modified by a post-translational modification on a specific residue. The most common PTMs on histones are methylation, acetylation and phosphorylation.","definition_xrefs":["PMID:31082667","PMID:34726351","PMID:11498575","PMID:25688442"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone reader activity","termid":"GO:0140566"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00545":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0140566"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0030674"}],"interesting_parent_ids":["GO:0060090","GO:0003674","GO:0140566","GO:0030674"],"is_obsolete":false,"name":"histone H4 reader activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0140008","terms_by_termid":{"GO:1990889":null}}


