# terms

id: PBO:0067301
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 386, pseudogene","termid":"PBO:0067301"}


id: MONDO:0011951
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any amyotrophic lateral sclerosis in which the cause of the disease is a mutation in the FUS gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial amyotrophic lateral sclerosis","termid":"MONDO:0005144"},{"relation_name":"is_a","term_name":"frontotemporal dementia with motor neuron disease","termid":"MONDO:0017161"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002039"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0002039","MONDO:0005559"],"is_obsolete":false,"name":"amyotrophic lateral sclerosis type 6","secondary_identifiers":["MEDGEN:419901","MESH:C567699","OMIM:608030","DOID:0060198","UMLS:C2931786","GARD:9874"],"synonyms":[{"name":"ALS6","type":"exact"},{"name":"FUS amyotrophic lateral sclerosis","type":"exact"},{"name":"amyotrophic lateral sclerosis 6 with or without frontotemporal dementia","type":"related"},{"name":"amyotrophic lateral sclerosis 6, with or without frontotemporal dementia","type":"exact"},{"name":"amyotrophic lateral sclerosis caused by mutation in FUS","type":"exact"},{"name":"autosomal recessive amyotrophic lateral sclerosis 6","type":"exact"}],"termid":"MONDO:0011951","xrefs":{"Monarch":{"xref_id":"0011951"}}}


id: GO:0045933
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of muscle contraction.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of muscle contraction","termid":"GO:0006937"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"positively_regulates","term_name":"muscle contraction","termid":"GO:0006936"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of muscle contraction","synonyms":[{"name":"activation of muscle contraction","type":"narrow"},{"name":"stimulation of muscle contraction","type":"narrow"},{"name":"up regulation of muscle contraction","type":"exact"},{"name":"up-regulation of muscle contraction","type":"exact"},{"name":"upregulation of muscle contraction","type":"exact"}],"termid":"GO:0045933"}


id: PBO:0040413
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase H+ transporting V0 subunit a4","termid":"PBO:0040413"}


id: GO:0048752
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the semicircular canals are generated and organized.","definition_xrefs":["GOC:dph","GOC:jid","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tube morphogenesis","termid":"GO:0035239"},{"relation_name":"is_a","term_name":"embryonic morphogenesis","termid":"GO:0048598"},{"relation_name":"part_of","term_name":"inner ear morphogenesis","termid":"GO:0042472"},{"relation_name":"part_of","term_name":"semicircular canal development","termid":"GO:0060872"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"semicircular canal morphogenesis","synonyms":[{"name":"embryonic semicircular canal morphogenesis","type":"exact"}],"termid":"GO:0048752"}


id: PBO:0064177
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase A2 group XD, pseudogene","termid":"PBO:0064177"}


id: GO:0072008
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the glomerular mesangial cells of the kidney as it progresses from its formation to the mature state.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell differentiation involved in kidney development","termid":"GO:0035850"},{"relation_name":"is_a","term_name":"mesangial cell differentiation","termid":"GO:0072007"},{"relation_name":"part_of","term_name":"glomerular mesangium development","termid":"GO:0072109"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"glomerular mesangial cell differentiation","termid":"GO:0072008"}


id: GO:0031244
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The component of the cell outer membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.","definition_xrefs":["GOC:mah","GOC:dos","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extrinsic component of membrane","termid":"GO:0019898"},{"relation_name":"part_of","term_name":"cell outer membrane","termid":"GO:0009279"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"extrinsic component of cell outer membrane","synonyms":[{"name":"extrinsic to cell outer membrane","type":"narrow"}],"termid":"GO:0031244"}


id: GO:0072526
data:
  {"annotated_genes":["SJAG_04048","SJAG_05314","SJAG_01543","SJAG_00461","SJAG_03091","SJAG_04192","SJAG_02369","SJAG_02796","SJAG_04334","SJAG_04495","SJAG_00839","SJAG_00027","SJAG_00605","SJAG_02945","SJAG_03903","SJAG_02009","SJAG_00685","SJAG_03373","SJAG_03660","SJAG_06622","SJAG_02135","SJAG_01310","SJAG_03828","SJAG_02785","SJAG_06621","SJAG_02107"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[109714,116679,105783,103704,109718,78187,98588,105782,94848,106151,109715,109716,109713,109717,106152,98317,103960,105781,109719,95341],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061621"},{"annotations":[88928],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061613"},{"annotations":[72552],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019677"},{"annotations":[72555],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006742"},{"annotations":[73389,76354],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0045820"},{"annotations":[70410],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0006110"},{"annotations":[101194],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042820"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a pyridine-containing compound, i.e. any compound that contains pyridine or a formal derivative thereof.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catabolic process","termid":"GO:0009056"},{"relation_name":"is_a","term_name":"pyridine-containing compound metabolic process","termid":"GO:0072524"}],"gene_count":26,"genes_by_uniquename":{"SJAG_00027":null,"SJAG_00461":null,"SJAG_00605":null,"SJAG_00685":null,"SJAG_00839":null,"SJAG_01310":null,"SJAG_01543":null,"SJAG_02009":null,"SJAG_02107":null,"SJAG_02135":null,"SJAG_02369":null,"SJAG_02785":null,"SJAG_02796":null,"SJAG_02945":null,"SJAG_03091":null,"SJAG_03373":null,"SJAG_03660":null,"SJAG_03828":null,"SJAG_03903":null,"SJAG_04048":null,"SJAG_04192":null,"SJAG_04334":null,"SJAG_04495":null,"SJAG_05314":null,"SJAG_06621":null,"SJAG_06622":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pyridine-containing compound catabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"pyridine and derivative catabolic process","type":"exact"},{"name":"pyridine-containing compound breakdown","type":"exact"},{"name":"pyridine-containing compound catabolism","type":"exact"},{"name":"pyridine-containing compound degradation","type":"exact"}],"termid":"GO:0072526","terms_by_termid":{"GO:0006110":null,"GO:0006742":null,"GO:0019677":null,"GO:0042820":null,"GO:0045820":null,"GO:0061613":null,"GO:0061621":null}}


id: GO:2000946
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of amylopectin catabolic process.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of starch catabolic process","termid":"GO:2000882"},{"relation_name":"is_a","term_name":"negative regulation of amylopectin metabolic process","termid":"GO:2000943"},{"relation_name":"is_a","term_name":"regulation of amylopectin catabolic process","termid":"GO:2000945"},{"relation_name":"negatively_regulates","term_name":"amylopectin catabolic process","termid":"GO:2000897"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"negatively_regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"negative regulation of amylopectin catabolic process","synonyms":[{"name":"negative regulation of Amylopectin catabolism","type":"exact"}],"termid":"GO:2000946"}


id: GO:0018595
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: alpha-pinene + O2 + 2 H+ + 2 e- = H2O + pinocarveol.","definition_xrefs":["UM-BBD_reactionID:r0716"],"gene_count":0,"genotype_count":0,"name":"obsolete alpha-pinene monooxygenase activity (obsolete GO:0018595)","termid":"GO:0018595"}


id: PBO:0017920
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"R3H and G-patch domain Sqs1(predicted)","termid":"PBO:0017920"}


id: PBO:0108547
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase I termination factor, Myb family Eta2","termid":"PBO:0108547"}


id: PBO:0059058
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MOB kinase activator 1A pseudogene 1","termid":"PBO:0059058"}


id: PBO:0043912
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CRLF3 pseudogene 2","termid":"PBO:0043912"}


id: PBO:0050301
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 3","termid":"PBO:0050301"}


id: PBO:0113502
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA 2'-phosphotransferase; catalyzes the final step in tRNA splicing, transferring the 2'-PO(4) from the splice junction to NAD(+), forming ADP-ribose 1''-2''cyclic phosphate and nicotinamide; ADP-ribosyltransferase that ADP-ribosylates 5'-phosphorylated ssDNA and ssRNAs; human and mouse orthologs complement the inviability of the yeast null mutant","termid":"PBO:0113502"}


id: PBO:0090785
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial carrier, pyruvate Mpc2","termid":"PBO:0090785"}


id: GO:0102177
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 24-methylenelophenol + O2 + NADH + H+ = 4alpha-hydroxymethyl-ergosta-7,24(241)-dien-3beta-ol + NAD + H2O.","definition_xrefs":["PMID:11707264","GOC:pz","RHEA:58872"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"24-methylenelophenol methyl oxidase activity","secondary_identifiers":["MetaCyc:RXN-11930","EC:1.14.18.11"],"termid":"GO:0102177"}


id: PBO:0056466
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAST3 antisense RNA 1","termid":"PBO:0056466"}


id: GO:0031751
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a D4 dopamine receptor.","definition_xrefs":["GOC:nln","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dopamine receptor binding","termid":"GO:0050780"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"D4 dopamine receptor binding","synonyms":[{"name":"D4 dopamine receptor ligand","type":"narrow"}],"termid":"GO:0031751"}


id: MONDO:1012140
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"primary ciliary dyskinesia, non-human animal","termid":"MONDO:1011925"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"primary ciliary dyskinesia, pig","secondary_identifiers":["OMIA:000573-9823"],"termid":"MONDO:1012140","xrefs":{"Monarch":{"xref_id":"1012140"}}}


id: PBO:0001795
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation elongation factor 2 (EF-2) Eft2,A","termid":"PBO:0001795"}


id: PBO:0091723
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human CDK1","termid":"PBO:0091723"}


id: PBO:0001801
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"flavonol reductase/cinnamoyl-CoA reductase family","termid":"PBO:0001801"}


id: MONDO:0015100
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"myelodysplastic syndrome with multilineage dysplasia","termid":"MONDO:0019453"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"aregenerative anemia","secondary_identifiers":["Orphanet:101096","UMLS:C0553669","SCTID:89112009","MedDRA:10054329","GARD:19778","MEDGEN:639969"],"termid":"MONDO:0015100","xrefs":{"Monarch":{"xref_id":"0015100"}}}


id: MONDO:0023243
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The Glass-Chapman-Hockley syndrome is a very rare disease. To date, the syndrome has only been reported in one family with five members affected in three generations. The first patients were two brothers that had an abnormally-shaped head due to coronal craniosynostosis. Their mother, maternal aunt, and maternal grandmother were also found to have the syndrome. The signs and symptoms varied from person to person; however, the signs and symptoms included coronal craniosynostosis, small middle part of the face (midfacial hypoplasia), and short fingers (brachydactyly).The inheritance is thought to be autosomal dominant. No genes have been identified for this syndrome. Treatment included surgery to correct the craniosynostosis. No issues with development and normal intelligence were reported. This is an n-of-1 use case where only one patient or family has been described with this disorder.","definition_xrefs":["GARD:0002479"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"craniosynostosis","termid":"MONDO:0015469"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0005497"],"is_obsolete":false,"name":"glass-chapman-hockley syndrome","secondary_identifiers":["Orphanet:1535","SCTID:720814001"],"synonyms":[{"name":"craniosynostosis - dysmorphism - brachydactyly","type":"related"},{"name":"craniosynostosis brachydactyly","type":"related"},{"name":"craniosynostosis with facial dysmorphism and brachydactyly syndrome","type":"exact"},{"name":"craniosynostosis-dysmorphism-brachydactyly syndrome","type":"related"},{"name":"glass chapman hockley syndrome","type":"related"}],"termid":"MONDO:0023243","xrefs":{"Monarch":{"xref_id":"0023243"}}}


id: GO:0080011
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-2,3-epoxysqualene = baruol. Baruol is also known as D:B-Friedo-Baccharan-5,21-dien-3-ol.","definition_xrefs":["RHEA:31987","PMID:17705488"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidosqualene cyclase activity","termid":"GO:0031559"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016853","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"baruol synthase activity","secondary_identifiers":["MetaCyc:RXN-9685","EC:5.4.99.57"],"termid":"GO:0080011"}


id: MONDO:0850109
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autoimmune disease","termid":"MONDO:0007179"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"non-specific autoimmune cerebellar ataxia without characteristic antibodies","secondary_identifiers":["GARD:22504","UMLS:C5576703","MEDGEN:1843044","Orphanet:624268"],"termid":"MONDO:0850109","xrefs":{"Monarch":{"xref_id":"0850109"}}}


id: PBO:0072334
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S26 pseudogene 20","termid":"PBO:0072334"}


id: PBO:0073073
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syndecan binding protein pseudogene 2","termid":"PBO:0073073"}


id: PBO:0085975
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; previously annotated as two separate ORFs, YDR474C and YDR475C, which were merged as a result of corrections to the systematic reference sequence; JIP4 has a paralog, YOR019W, that arose from the whole genome duplication","termid":"PBO:0085975"}


id: PBO:0000294
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit L16 (predicted)","termid":"PBO:0000294"}


id: MONDO:0100541
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A congenital heart disease that is present at birth. Representative examples include tetralogy of fallot, bicuspid aortic valve, atrial septal defect, double outlet right ventricle, ventricular septal defect, and coarctation of the aorta, and atrioventricular canal.","definition_xrefs":["PMID:22641149","PMID:22961344","PMID:23031282","PMID:24638895","PMID:23289003"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital heart disease","termid":"MONDO:0005453"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"GATA5-related congenital heart defects","synonyms":[{"name":"GATA5 related congenital heart defects","type":"exact"}],"termid":"MONDO:0100541","xrefs":{"Monarch":{"xref_id":"0100541"}}}


id: MONDO:0850306
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A type 1 diabetes mellitus that is characterized by a less intensive autoimmune process, highly variable β-cell destruction, different degrees of insulin resistance and heterogeneous titre and pattern of islet autoantibody, sharing features with both type 1 and type 2 diabetes mellitus.","definition_xrefs":["DOID:0080846"],"direct_ancestors":[{"relation_name":"is_a","term_name":"type 1 diabetes mellitus","termid":"MONDO:0005147"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005015"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005015","MONDO:0004335","MONDO:0005066","MONDO:0005046"],"is_obsolete":false,"name":"latent autoimmune diabetes in adults","secondary_identifiers":["icd11.foundation:1918279014","MEDGEN:895261","UMLS:C1739108"],"termid":"MONDO:0850306","xrefs":{"Monarch":{"xref_id":"0850306"}}}


id: PBO:0059887
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND1 pseudogene 10","termid":"PBO:0059887"}


id: GO:1904680
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a peptide from one side of a membrane to the other.","definition_xrefs":["GOC:vw","GOC:TermGenie","GO_REF:0000070"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane transporter activity","termid":"GO:0022857"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"peptide transmembrane transporter activity","secondary_identifiers":["GO:0015637","Reactome:R-HSA-1500817","GO:0015197"],"synonyms":[{"name":"peptide transporter activity","type":"related"},{"name":"peptide uptake permease activity","type":"related"}],"termid":"GO:1904680"}


id: MONDO:0019950
data:
  {"annotated_genes":["SJAG_02096","SJAG_05219","SJAG_03188","SJAG_02103","SJAG_01918","SJAG_00804","SJAG_00831","SJAG_01491","SJAG_04316","SJAG_04053"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85524],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012248"},{"annotations":[86990,86991],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013162"},{"annotations":[86272],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014142"},{"annotations":[85616],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014023"},{"annotations":[86456],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014896"},{"annotations":[85488],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013049"},{"annotations":[86673],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011246"},{"annotations":[86084,86085],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009682"},{"annotations":[86179,86178,86177],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009364"},{"annotations":[86265],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014140"},{"annotations":[86985,86984],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013154"},{"annotations":[85576],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0033556"},{"annotations":[86989],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013159"},{"annotations":[86270],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014141"},{"annotations":[86988,86987],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013160"}]},"cv_name":"mondo","definition":"A muscular dystrophy that is characterized by diminished muscle tone (hypotonia), progressive muscle weakness and degeneration (atrophy), abnormally fixed joints, spinal rigidity, and delays in reaching motor milestones such as sitting or standing unassisted.","definition_xrefs":["DOID:0050557"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital nervous system disorder","termid":"MONDO:0002320"},{"relation_name":"is_a","term_name":"muscular dystrophy","termid":"MONDO:0020121"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00804":null,"SJAG_00831":null,"SJAG_01491":null,"SJAG_01918":null,"SJAG_02096":null,"SJAG_02103":null,"SJAG_03188":null,"SJAG_04053":null,"SJAG_04316":null,"SJAG_05219":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320","MONDO:0005336"],"is_obsolete":false,"name":"congenital muscular dystrophy","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:147063","Orphanet:97242","icd11.foundation:396687076","UMLS:C0699743","ICD9:359.0","GARD:9138","SCTID:240059009"],"synonyms":[{"name":"CMD","type":"exact"},{"name":"MDC","type":"exact"},{"name":"congenital MD","type":"related"}],"termid":"MONDO:0019950","terms_by_termid":{"MONDO:0009364":null,"MONDO:0009682":null,"MONDO:0011246":null,"MONDO:0012248":null,"MONDO:0013049":null,"MONDO:0013154":null,"MONDO:0013159":null,"MONDO:0013160":null,"MONDO:0013162":null,"MONDO:0014023":null,"MONDO:0014140":null,"MONDO:0014141":null,"MONDO:0014142":null,"MONDO:0014896":null,"MONDO:0033556":null},"xrefs":{"Monarch":{"xref_id":"0019950"}}}


id: PBO:0049957
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HIG1 hypoxia inducible domain family member 1A pseudogene 3","termid":"PBO:0049957"}


id: PBO:0089720
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA (m1A) methyltransferase non-catalytic subunit Gcd10","termid":"PBO:0089720"}


id: PBO:0082142
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Activator of G1-specific transcription factors MBF and SBF; involved in regulation of the timing of G1-specific gene transcription and cell cycle initiation; localization is cell-cycle dependent and regulated by Cdc28p phosphorylation; MSA1 has a paralog, MSA2, that arose from the whole genome duplication","termid":"PBO:0082142"}


id: FYPO:0004077
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A sporulation phenotype that results in the formation of an ascus that contains a single spore that is larger than normal.","definition_xrefs":["PMID:15331764","PomBase:mah","PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal sporulation resulting in formation of ascus with fewer than four spores","termid":"FYPO:0003066"},{"relation_name":"output_of","term_name":"abolished meiosis I","termid":"FYPO:0003378"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000121"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0000121","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abnormal sporulation resulting in formation of ascus with single large spore","synonyms":[{"name":"abnormal ascospore formation resulting in formation of ascus with single large spore","type":"exact"},{"name":"abnormal sporulation resulting in formation of single-spored asci","type":"exact"}],"termid":"FYPO:0004077"}


id: PBO:0003583
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pig-O (predicted)","termid":"PBO:0003583"}


id: MONDO:0033092
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive congenital ichthyosis","termid":"MONDO:0017265"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"ichthyosis, congenital, autosomal recessive 13","secondary_identifiers":["MEDGEN:1620886","UMLS:C4539772","DOID:0080257","OMIM:617574"],"synonyms":[{"name":"ARCI13","type":"related"},{"name":"autosomal recessive congenital ichthyosis 13","type":"related"},{"name":"ichthyosis, congenital, autosomal recessive 13","type":"exact"}],"termid":"MONDO:0033092","xrefs":{"Monarch":{"xref_id":"0033092"}}}


id: SO:0001364
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"5_methylaminomethyluridine is a modified uridine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_uridine","termid":"SO:0001277"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"five_methylaminomethyluridine","secondary_identifiers":["RNAMOD:072"],"synonyms":[{"name":"5-methylaminomethyluridine","type":"exact"},{"name":"five methylaminomethyluridine","type":"exact"},{"name":"mnm5U","type":"exact"}],"termid":"SO:0001364"}


id: PBO:0111334
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 snoRNP-associated protein Cic1/Utp30 family involved in ribosome biogenesis","termid":"PBO:0111334"}


id: PBO:0062442
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily E member 106 pseudogene","termid":"PBO:0062442"}


id: GO:0140381
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 S-adenosyl-L-methionine (SAM) + 4-hydroxytryptamine 4-phosphate (norbaeocystin) = 2 S-adenosyl-L-homocysteine + psilocybin.","definition_xrefs":["PMID:28763571"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674","GO:0016741"],"is_obsolete":false,"name":"4-hydroxytryptamine 4-phosphate methyltransferase activity","secondary_identifiers":["RHEA:55568","EC:2.1.1.345"],"synonyms":[{"name":"norbaeocystin methyltransferase","type":"exact"},{"name":"psilocybin synthase","type":"exact"}],"termid":"GO:0140381"}


id: MONDO:0020164
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete epicanthal fold (obsolete MONDO:0020164)","secondary_identifiers":["Orphanet:98573"],"termid":"MONDO:0020164","xrefs":{"Monarch":{"xref_id":"0020164"}}}


id: GO:0016184
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Return of a vesicle from the postsynaptic membrane to presynaptic membrane.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete synaptic vesicle retrieval (obsolete GO:0016184)","synonyms":[{"name":"synaptic vesicle retrieval","type":"exact"}],"termid":"GO:0016184"}


id: PBO:0083590
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; YPR012W is not an essential gene","termid":"PBO:0083590"}


id: GO:0030786
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + (RS)-norcoclaurine = S-adenosyl-L-homocysteine + (RS)-coclaurine.","definition_xrefs":["EC:2.1.1.128"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0016741","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"(RS)-norcoclaurine 6-O-methyltransferase activity","secondary_identifiers":["MetaCyc:2.1.1.128-RXN","RHEA:19941"],"synonyms":[{"name":"S-adenosyl-L-methionine:(RS)-norcoclaurine 6-O-methyltransferase activity","type":"related"}],"termid":"GO:0030786"}


id: GO:0001100
data:
  {"annotated_genes":["SJAG_04943","SJAG_03048"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[68273,102685],"is_not":false,"summary":null,"term":"GO:0001100"}]},"cv_name":"biological_process","definition":"Any process involved in the inhibition of progression from anaphase/telophase (high mitotic CDK activity) to G1 (low mitotic CDK activity).","definition_xrefs":["GOC:rn"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of exit from mitosis","termid":"GO:0007096"},{"relation_name":"is_a","term_name":"negative regulation of mitotic cell cycle phase transition","termid":"GO:1901991"},{"relation_name":"negatively_regulates","term_name":"exit from mitosis","termid":"GO:0010458"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03048":null,"SJAG_04943":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"negatively_regulates","termid":"GO:0044772"},{"rel_name":"regulates","termid":"GO:0044772"},{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0044772","GO:0008150"],"is_obsolete":false,"name":"negative regulation of exit from mitosis","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of exit from mitosis","type":"exact"},{"name":"down-regulation of exit from mitosis","type":"exact"},{"name":"downregulation of exit from mitosis","type":"exact"},{"name":"inhibition of exit from mitosis","type":"narrow"}],"termid":"GO:0001100","terms_by_termid":{"GO:0001100":null}}


id: PBO:0043809
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"copine 1","termid":"PBO:0043809"}


id: MONDO:0009598
data:
  {"annotated_genes":["SJAG_00602"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85779],"is_not":false,"summary":null,"term":"MONDO:0009598"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"osteochondrodysplasia","termid":"MONDO:0005516"},{"relation_name":"is_a","term_name":"skeletal dysplasia","termid":"MONDO:0018230"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00602":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"metaphyseal chondrodysplasia-retinitis pigmentosa syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["Orphanet:166035","OMIM:250410","MEDGEN:381579","UMLS:C1855188","GARD:17017","MESH:C565398"],"synonyms":[{"name":"RPSKA","type":"related"},{"name":"brachydactyly-short stature-retinitis pigmentosa syndrome","type":"related"},{"name":"metaphyseal chondrodysplasia with retinitis pigmentosa","type":"related"},{"name":"retinitis pigmentosa with or without skeletal anomalies","type":"related"}],"termid":"MONDO:0009598","terms_by_termid":{"MONDO:0009598":null},"xrefs":{"Monarch":{"xref_id":"0009598"}}}


id: PBO:0090388
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription factor, calcineurin responsive Prz1","termid":"PBO:0090388"}


id: GO:0019310
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of inositol, 1,2,3,4,5,6-cyclohexanehexol, a growth factor for animals and microorganisms.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inositol metabolic process","termid":"GO:0006020"},{"relation_name":"is_a","term_name":"polyol catabolic process","termid":"GO:0046174"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"inositol catabolic process","secondary_identifiers":["MetaCyc:P562-PWY"],"synonyms":[{"name":"inositol breakdown","type":"exact"},{"name":"inositol catabolism","type":"exact"},{"name":"inositol degradation","type":"exact"},{"name":"myo-inositol catabolic process","type":"narrow"},{"name":"myo-inositol catabolism","type":"narrow"},{"name":"vitamin Bh catabolic process","type":"exact"},{"name":"vitamin Bh catabolism","type":"exact"}],"termid":"GO:0019310"}


id: PBO:0077160
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TLE family member 1 pseudogene 1","termid":"PBO:0077160"}


id: MONDO:0001144
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"paralytic strabismus","termid":"MONDO:0001143"},{"relation_name":"is_a","term_name":"oculomotor nerve paralysis","termid":"MONDO:0001309"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"partial third-nerve palsy","secondary_identifiers":["DOID:10864","ICD9:378.51","MEDGEN:75745","SCTID:194118007","UMLS:C0271370"],"synonyms":[{"name":"partial third nerve palsy","type":"exact"},{"name":"third nerve palsy with pupil sparing","type":"exact"},{"name":"third or oculomotor nerve palsy, partial","type":"exact"}],"termid":"MONDO:0001144","xrefs":{"Monarch":{"xref_id":"0001144"}}}


id: PBO:0060736
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase complex assembly factor 4 pseudogene 1","termid":"PBO:0060736"}


id: MONDO:0007779
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Autosomal dominant form of Opitz G/BBB syndrome.","definition_xrefs":["MONDO:patterns/autosomal_dominant"],"gene_count":0,"genotype_count":0,"name":"obsolete autosomal dominant Opitz G/BBB syndrome (obsolete MONDO:0007779)","secondary_identifiers":["Orphanet:306588","OMIM:145410"],"synonyms":[{"name":"ADOS","type":"exact"},{"name":"BBB syndrome","type":"related"},{"name":"G syndrome","type":"related"},{"name":"GBBB syndrome","type":"related"},{"name":"GBBB2","type":"related"},{"name":"Opitz Bbbg syndrome","type":"related"},{"name":"Opitz G/BBB syndrome, autosomal dominant","type":"exact"},{"name":"Opitz GBBB syndrome, autosomal dominant","type":"related"},{"name":"Opitz GBBB syndrome, type 2","type":"related"},{"name":"Opitz GBBB syndrome, type II","type":"related"},{"name":"Opitz oculogenitolaryngeal syndrome, type 2","type":"related"},{"name":"Opitz-Frias syndrome","type":"related"},{"name":"Opitz-G syndrome, type 2","type":"related"},{"name":"autosomal dominant Opitz BBB/G syndrome","type":"exact"},{"name":"autosomal dominant Opitz syndrome","type":"exact"},{"name":"chromosome 22Q11.2 deletion syndrome, Opitz phenotype","type":"related"},{"name":"hypertelorism with esophageal Abnormality and hypospadias","type":"related"},{"name":"hypertelorism-hypospadias syndrome","type":"related"},{"name":"hypospadias-dysphagia syndrome","type":"related"},{"name":"telecanthus with associated abnormalities","type":"related"},{"name":"telecanthus-hypospadias syndrome","type":"related"}],"termid":"MONDO:0007779","xrefs":{"Monarch":{"xref_id":"0007779"}}}


id: GO:0002471
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a monocyte expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex.","definition_xrefs":["GOC:add","PMID:11200054"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antigen processing and presentation","termid":"GO:0019882"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"monocyte antigen processing and presentation","termid":"GO:0002471"}


id: PATO:0000554
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000554 cold sensitive (obsolete PATO:0000554)","termid":"PATO:0000554"}


id: SO:0000766
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A tRNA sequence that has a pyrrolysine anticodon, and a 3' pyrrolysine binding region.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"pyrrolysine_tRNA_primary_transcript","termid":"SO:0001178"},{"relation_name":"is_a","term_name":"tRNA","termid":"SO:0000253"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyrrolysyl_tRNA","synonyms":[{"name":"pyrrolysyl tRNA","type":"exact"},{"name":"pyrrolysyl-transfer RNA","type":"exact"},{"name":"pyrrolysyl-transfer ribonucleic acid","type":"exact"}],"termid":"SO:0000766"}


id: PBO:0029841
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_maintenance_of_protein_localization_to_heterochromatin_at_centromere_outer_repeat","termid":"PBO:0029841"}


id: FYECO:0000104
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Experiments were performed in minimal medium containing a low concentration of glucose (~0.5%) as carbon source, salts and water.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping defined medium","termid":"FYECO:0000013"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"low glucose MM","synonyms":[{"name":"low glucose minimal medium","type":"exact"}],"termid":"FYECO:0000104"}


id: PBO:0047622
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fidgetin like 1","termid":"PBO:0047622"}


id: PBO:0005024
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aneuploidy","termid":"PBO:0005024"}


id: PR:O36022
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mnn9 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O36022"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mannan polymerase complex subunit mnn9 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4F10.10c","synonyms":[{"name":"Spom972h-mnn9","type":"exact"}],"termid":"PR:O36022"}


id: PBO:0054909
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2323","termid":"PBO:0054909"}


id: MONDO:0012218
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dandy-walker malformation with occipital cephalocele, autosomal dominant","secondary_identifiers":["MESH:C567185","OMIM:609222","MEDGEN:393273","UMLS:C2674987"],"synonyms":[{"name":"ADDWOC","type":"exact"},{"name":"Dandy-Walker malformation with occipital cephalocele, autosomal dominant","type":"related"}],"termid":"MONDO:0012218","xrefs":{"Monarch":{"xref_id":"0012218"}}}


id: PBO:0016579
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complements S. cerevisiae RPB6","termid":"PBO:0016579"}


id: PBO:0031695
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_nuclear_import","termid":"PBO:0031695"}


id: GO:1990230
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex capable of catalyzing the transfer of an iron-sulfur (Fe-S) cluster from one compound (donor) to another (acceptor), which may be a target protein or another Fe-S assembly complex. In humans, it consists of HSPA9, HSCB, GLRX5, ABCB7 and GFER.","definition_xrefs":["PMID:19810706","PMID:34660592","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase complex","termid":"GO:1990234"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"iron-sulfur cluster transfer complex","synonyms":[{"name":"Fe-S cluster transfer complex","type":"exact"},{"name":"IscA complex","type":"narrow"},{"name":"SufA complex","type":"narrow"},{"name":"SufA dimer","type":"narrow"}],"termid":"GO:1990230"}


id: GO:0004808
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-aminomethyl-2-thiouridine34 in tRNA + S-adenosyl-L-methionine = 5-methylaminomethyl-2-thiouridine34 in tRNA + H+ + S-adenosyl-L-homocysteine. This enzyme specifically adds the terminal methyl group of 5-[(methylamino)methyl]-2-thiouridylate.","definition_xrefs":["RHEA:19569"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"},{"relation_name":"is_a","term_name":"tRNA (uridine) methyltransferase activity","termid":"GO:0016300"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0140101"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0140101","GO:0140098","GO:0016741","GO:0003674"],"is_obsolete":false,"name":"tRNA (5-methylaminomethyl-2-thiouridylate)(34)-methyltransferase activity","secondary_identifiers":["GO:0016425","EC:2.1.1.61","MetaCyc:RXN0-5144","KEGG_REACTION:R00601"],"synonyms":[{"name":"tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity","type":"exact"},{"name":"tRNA 5-methylaminomethyl-2-thiouridylate 5'-methyltransferase activity","type":"related"}],"termid":"GO:0004808"}


id: MONDO:0971128
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"eye disorder","termid":"MONDO:0005328"},{"relation_name":"is_a","term_name":"inflammatory disease","termid":"MONDO:0021166"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"multiple evanescent white dot syndrome","secondary_identifiers":["MEDGEN:676519","Orphanet:674953","UMLS:C0730322"],"termid":"MONDO:0971128","xrefs":{"Monarch":{"xref_id":"0971128"}}}


id: PBO:0108572
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rix1 complex armadillo-type fold Rix1","termid":"PBO:0108572"}


id: GO:0019060
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a viral protein within the host cell.","definition_xrefs":["ISBN:0781702534","GOC:ai","ISBN:0781718325","PMID:11581394","PMID:9188566"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont intracellular protein transport in host","termid":"GO:0030581"},{"relation_name":"part_of","term_name":"regulation by virus of viral protein levels in host cell","termid":"GO:0046719"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"intracellular transport of viral protein in host cell","secondary_identifiers":["GO:0046743","GO:0046742","GO:0046801","Reactome:R-HSA-168874"],"synonyms":[{"name":"cytoplasmic viral capsid transport","type":"narrow"},{"name":"intracellular transport of viral capsid in host cell","type":"narrow"},{"name":"intracellular transport of viral capsid protein in host cell","type":"narrow"},{"name":"intracellular transport of viral proteins in host cell","type":"exact"},{"name":"intracellular viral capsid transport","type":"narrow"},{"name":"intracellular viral protein transport","type":"exact"},{"name":"nuclear viral capsid transport","type":"narrow"},{"name":"viral capsid transport in host cell cytoplasm","type":"narrow"},{"name":"viral capsid transport in host cell nucleus","type":"narrow"}],"termid":"GO:0019060"}


id: PBO:0000518
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.7.11.1","termid":"PBO:0000518"}


id: GO:0046542
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of alpha-factor, one of the two yeast mating factors, out of a cell.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete alpha-factor export (obsolete GO:0046542)","synonyms":[{"name":"alpha-factor export","type":"exact"}],"termid":"GO:0046542"}


id: GO:0004055
data:
  {"annotated_genes":["SJAG_04577"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[70867],"is_not":false,"summary":null,"term":"GO:0004055"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + L-citrulline + L-aspartate = AMP + diphosphate + (N(omega)-L-arginino)succinate.","definition_xrefs":["EC:6.3.4.5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ligase activity, forming carbon-nitrogen bonds","termid":"GO:0016879"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04577":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0016874","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"argininosuccinate synthase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-70577","MetaCyc:ARGSUCCINSYN-RXN","RHEA:10932"],"synonyms":[{"name":"L-citrulline:L-aspartate ligase (AMP-forming)","type":"related"},{"name":"arginine succinate synthetase activity","type":"related"},{"name":"argininosuccinate synthetase activity","type":"related"},{"name":"argininosuccinic acid synthetase activity","type":"related"},{"name":"arginosuccinate synthetase activity","type":"related"},{"name":"citrulline--aspartate ligase activity","type":"related"}],"termid":"GO:0004055","terms_by_termid":{"GO:0004055":null}}


id: PBO:0074219
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC44A3 pseudogene 1","termid":"PBO:0074219"}


id: SO:0000788
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000788 cloned (obsolete SO:0000788)","termid":"SO:0000788"}


id: GO:0099063
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the postsynaptic recycling endosome membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.","definition_xrefs":["GOC:dos"],"gene_count":0,"genotype_count":0,"name":"obsolete integral component of postsynaptic recycling endosome membrane (obsolete GO:0099063)","termid":"GO:0099063"}


id: GO:0006601
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of creatine, N-[amino(imino)methyl]-N-methylglycine. Creatine is formed by a process beginning with amidino group transfer from L-arginine to glycine to form guanidinoacetate, followed by methyl group transfer from S-adenosyl-L-methionine to guanidinoacetate; it is then is phosphorylated to form a pool that stores high energy phosphate for the replenishment of ATP during periods of high, or fluctuating energy demand. In animals, most creatine is transported to and used in muscle.","definition_xrefs":["GOC:mah","MetaCyc:GLYCGREAT-PWY"],"direct_ancestors":[{"relation_name":"is_a","term_name":"creatine metabolic process","termid":"GO:0006600"},{"relation_name":"is_a","term_name":"modified amino acid biosynthetic process","termid":"GO:0042398"},{"relation_name":"is_a","term_name":"monocarboxylic acid biosynthetic process","termid":"GO:0072330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"creatine biosynthetic process","synonyms":[{"name":"creatine anabolism","type":"exact"},{"name":"creatine biosynthesis","type":"exact"},{"name":"creatine formation","type":"exact"},{"name":"creatine synthesis","type":"exact"}],"termid":"GO:0006601"}


id: GO:0048145
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of multiplication or reproduction of fibroblast cells.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell population proliferation","termid":"GO:0042127"},{"relation_name":"regulates","term_name":"fibroblast proliferation","termid":"GO:0048144"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of fibroblast proliferation","termid":"GO:0048145"}


id: PBO:0038552
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ABHD17A pseudogene 7","termid":"PBO:0038552"}


id: GO:0061452
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a neuron whose cell body resides in the retrotrapezoid nucleus.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"central nervous system neuron differentiation","termid":"GO:0021953"},{"relation_name":"part_of","term_name":"retrotrapezoid nucleus development","termid":"GO:0061451"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"retrotrapezoid nucleus neuron differentiation","termid":"GO:0061452"}


id: MONDO:1010262
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Polycystic kidney disease that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"},{"relation_name":"is_a","term_name":"renal disease, non-human animal","termid":"MONDO:1011909"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polycystic kidney disease, non-human animal","secondary_identifiers":["OMIA:000807"],"termid":"MONDO:1010262","xrefs":{"Monarch":{"xref_id":"1010262"}}}


id: MONDO:0034142
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pancreatic agenesis-holoprosencephaly syndrome","secondary_identifiers":["UMLS:C5681334","GARD:17992","MEDGEN:1808942","Orphanet:556955"],"termid":"MONDO:0034142","xrefs":{"Monarch":{"xref_id":"0034142"}}}


id: GO:0004073
data:
  {"annotated_genes":["SJAG_00234"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[64634],"is_not":false,"summary":null,"term":"GO:0004073"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-aspartate 4-semialdehyde + NADP+ + phosphate = 4-phospho-L-aspartate + H+ + NADPH.","definition_xrefs":["RHEA:24284","EC:1.2.1.11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor","termid":"GO:0016620"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00234":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"aspartate-semialdehyde dehydrogenase activity","references_by_uniquename":{"GO_REF:0000003":null},"secondary_identifiers":["KEGG_REACTION:R02291","MetaCyc:ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN"],"synonyms":[{"name":"ASA dehydrogenase activity","type":"related"},{"name":"L-aspartate-4-semialdehyde:NADP+ oxidoreductase (phosphorylating)","type":"related"},{"name":"L-aspartate-beta-semialdehyde dehydrogenase activity","type":"related"},{"name":"L-aspartate-beta-semialdehyde:NADP oxidoreductase (phosporylating)","type":"related"},{"name":"aspartate semialdehyde dehydrogenase activity","type":"related"},{"name":"aspartic beta-semialdehyde dehydrogenase activity","type":"related"},{"name":"aspartic semialdehyde dehydrogenase activity","type":"related"}],"termid":"GO:0004073","terms_by_termid":{"GO:0004073":null}}


id: PBO:0060952
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear factor I X","termid":"PBO:0060952"}


id: GO:0072664
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which a protein is maintained in a specific location in a peroxisome, and is prevented from moving elsewhere.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maintenance of protein localization in organelle","termid":"GO:0072595"},{"relation_name":"part_of","term_name":"protein localization to peroxisome","termid":"GO:0072662"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007031"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0007031"],"is_obsolete":false,"name":"maintenance of protein location in peroxisome","termid":"GO:0072664"}


id: GO:0044332
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of molecular signals initiated by binding of Wnt protein to a frizzled family receptor on the surface of the target cell contributing to the establishment, maintenance and elaboration of the dorsal/ventral axis.","definition_xrefs":["GOC:jl","GOC:yaf"],"gene_count":0,"genotype_count":0,"name":"obsolete Wnt signaling pathway involved in dorsal/ventral axis specification (obsolete GO:0044332)","synonyms":[{"name":"Wnt receptor signaling pathway involved in dorsal/ventral axis specification","type":"exact"},{"name":"Wnt receptor signalling pathway involved in dorsal/ventral axis specification","type":"exact"},{"name":"Wnt-activated signaling pathway involved in dorsal/ventral axis specification","type":"exact"}],"termid":"GO:0044332"}


id: PBO:0030223
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-fragmented_spindle_pole_body","termid":"PBO:0030223"}


id: PBO:0054521
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1921","termid":"PBO:0054521"}


id: GO:0075040
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process modulates the frequency, rate or extent of turgor formation in the symbiont appressorium.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of establishment of turgor in appressorium (obsolete GO:0075040)","synonyms":[{"name":"regulation of turgor formation in appressorium","type":"related"}],"termid":"GO:0075040"}


id: MONDO:0008069
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Leigh syndrome","termid":"MONDO:0009723"},{"relation_name":"is_a","term_name":"acute disease","termid":"MONDO:0020683"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0004069","MONDO:0005066","MONDO:0005244"],"is_obsolete":false,"name":"necrotizing encephalomyelopathy, subacute, of Leigh, adult","secondary_identifiers":["UMLS:C1834340","OMIM:161700","MEDGEN:331718","MESH:C563530"],"synonyms":[{"name":"Leigh syndrome, adult","type":"related"},{"name":"necrotizing encephalomyelopathy, subacute, of Leigh, adult","type":"exact"}],"termid":"MONDO:0008069","xrefs":{"Monarch":{"xref_id":"0008069"}}}


id: PBO:0058968
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mohawk homeobox","termid":"PBO:0058968"}


id: PBO:0052096
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kelch repeat and BTB domain containing 13","termid":"PBO:0052096"}


id: FYPO:0005491
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the maintenance of protein localization in vacuole occurs to a lower extent than normal, and some of the protein is secreted, i.e. some of a protein that normally resides in the vacuole is instead secreted.","definition_xrefs":["PomBase:mah","PMID:22484924"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to vacuole","termid":"FYPO:0005490"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000138","FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased maintenance of protein localization in vacuole, with protein secreted","synonyms":[{"name":"decreased maintenance of protein localisation in vacuole, with protein secreted","type":"exact"},{"name":"decreased maintenance of protein localization in vacuole, with protein secreted, during mitotic cell cycle","type":"related"},{"name":"decreased maintenance of protein localization in vacuole, with protein secreted, during vegetative growth","type":"exact"},{"name":"protein partially mislocalized from vacuole to extracellular region","type":"related"},{"name":"reduced maintenance of protein localization in vacuole, with protein secreted","type":"exact"}],"termid":"FYPO:0005491"}


id: PBO:0074719
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 79","termid":"PBO:0074719"}


id: FYPO:0003017
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cell morphology phenotype in which a vegetative cell is inviable and elongated during a cellular response to salt stress.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete inviable elongated vegetative cell during cellular response to salt stress (obsolete FYPO:0003017)","synonyms":[{"name":"elongated inviable cell during cellular response to salt stress during vegetative growth","type":"exact"},{"name":"elongated inviable vegetative cell during cellular response to salt stress","type":"exact"},{"name":"inviable elongated vegetative cell during cellular response to salt stress during mitotic cell cycle","type":"related"},{"name":"lethal; elongated vegetative cell during cellular response to salt stress","type":"exact"}],"termid":"FYPO:0003017"}


id: PBO:0085440
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Polynucleotide kinase present on rDNA; required for efficient transcription termination by RNA polymerase I; functions with Las1p in a conserved mechanism to cleave pre-rRNA at a specific site during rRNA processing and ribosome biogenesis; required for cell growth; mRNA is cell-cycle regulated","termid":"PBO:0085440"}


id: PBO:0063690
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphogluconate dehydrogenase pseudogene 2","termid":"PBO:0063690"}


id: MONDO:1012474
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Retinal degeneration that occurs in the Smoky Joe breed of chicken.","definition_xrefs":["OMIA:001869-9031"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bird disease","termid":"MONDO:0024905"},{"relation_name":"is_a","term_name":"retinal degeneration, non-human animal","termid":"MONDO:1010326"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retinal degeneration, Smoky Joe, chicken","termid":"MONDO:1012474","xrefs":{"Monarch":{"xref_id":"1012474"}}}


id: GO:0061091
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the translocation, or flipping, of phospholipid molecules from one monolayer of a membrane bilayer to the opposite monolayer.","definition_xrefs":["GOC:jh","PMID:19966303","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular component organization","termid":"GO:0051128"},{"relation_name":"is_a","term_name":"regulation of membrane lipid distribution","termid":"GO:0097035"},{"relation_name":"is_a","term_name":"regulation of phospholipid transport","termid":"GO:2001138"},{"relation_name":"regulates","term_name":"phospholipid translocation","termid":"GO:0045332"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0061024"],"is_obsolete":false,"name":"regulation of phospholipid translocation","termid":"GO:0061091"}


id: PBO:0076725
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TCL1 family AKT coactivator A","termid":"PBO:0076725"}


id: GO:0071713
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: para-aminobenzoyl-glutamate + H2O = para-aminobenzoate + L-glutamate.","definition_xrefs":["GOC:imk","PMID:20190044"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016810","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"para-aminobenzoyl-glutamate hydrolase activity","termid":"GO:0071713"}


id: PBO:0109104
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF217 antisense RNA 1","termid":"PBO:0109104"}


id: SO:0001959
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A cis-regulatory element, conserved sequence YYC+1TTTYY, and spans -2 to +6 relative to +1 TSS. It is present in most ribosomal protein genes in Drosophila and mammals but not in the yeast Saccharomyces cerevisiae. Resembles the initiator (TCAKTY in Drosophila) but functionally distinct from initiator.","definition_xrefs":["PMID:20801935","SO:myl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"core_eukaryotic_promoter_element","termid":"SO:0001660"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TCT_motif","synonyms":[{"name":"TCT element","type":"exact"},{"name":"polypyrimidine initiator","type":"exact"}],"termid":"SO:0001959"}


id: GO:0009658
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the chloroplast.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plastid organization","termid":"GO:0009657"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"chloroplast organization","synonyms":[{"name":"chloroplast organisation","type":"exact"},{"name":"chloroplast organization and biogenesis","type":"related"}],"termid":"GO:0009658"}


id: MONDO:0019011
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Charcot-Marie-Tooth disease type 1 (CMT1) is a group of autosomal dominant demyelinating peripheral neuropathies characterized by distal weakness and atrophy, sensory loss, foot deformities, and slow nerve conduction velocity.","definition_xrefs":["Orphanet:65753"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Charcot-Marie-Tooth disease","termid":"MONDO:0015626"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244"],"is_obsolete":false,"name":"Charcot-Marie-Tooth disease type 1","secondary_identifiers":["DOID:0050538","MEDGEN:155486","SCTID:398040009","NANDO:1200017","GARD:12433","UMLS:C0751036"],"synonyms":[{"name":"CMT1","type":"exact"},{"name":"Charcot-Marie-Tooth neuropathy type 1","type":"exact"},{"name":"Charcot-Marie-Tooth type 1","type":"related"},{"name":"autosomal dominant demyelinating Charcot-Marie-Tooth disease","type":"exact"},{"name":"hereditary motor and sensory neuropathy type 1","type":"exact"}],"termid":"MONDO:0019011","xrefs":{"Monarch":{"xref_id":"0019011"}}}


id: GO:0055077
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A wide pore channel activity that enables the transport of a solute across a membrane via a gap junction hemi-channel. Two gap junction hemi-channels coupled together form a complete gap junction.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"wide pore channel activity","termid":"GO:0022829"},{"relation_name":"part_of","term_name":"gap junction channel activity","termid":"GO:0005243"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"part_of","termid":"GO:0022857"},{"rel_name":"part_of","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"gap junction hemi-channel activity","synonyms":[{"name":"connexon channel activity","type":"exact"}],"termid":"GO:0055077"}


id: PBO:0085876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching","termid":"PBO:0085876"}


id: MONDO:0012876
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited thrombophilia","termid":"MONDO:0100240"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"heparin cofactor 2 deficiency","secondary_identifiers":["MEDGEN:96017","OMIM:612356","SCTID:234468009","MESH:C562865","UMLS:C0398626","ICD9:286.3","DOID:0111901"],"synonyms":[{"name":"Hcf 2 deficiency","type":"related"},{"name":"Hcf2 deficiency","type":"related"},{"name":"heparin cofactor 2 deficiency","type":"exact"},{"name":"heparin cofactor II deficiency","type":"related"},{"name":"thrombophilia 10 due to heparin cofactor II deficiency","type":"exact"},{"name":"thrombophilia due to heparin cofactor 2 deficiency","type":"related"}],"termid":"MONDO:0012876","xrefs":{"Monarch":{"xref_id":"0012876"}}}


id: GO:1904018
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of vasculature development.","definition_xrefs":["PMID:21472453","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of developmental process","termid":"GO:0051094"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"is_a","term_name":"regulation of vasculature development","termid":"GO:1901342"},{"relation_name":"positively_regulates","term_name":"vasculature development","termid":"GO:0001944"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of vasculature development","synonyms":[{"name":"activation of vascular system development","type":"related"},{"name":"activation of vasculature development","type":"narrow"},{"name":"positive regulation of vascular system development","type":"related"},{"name":"up regulation of vascular system development","type":"related"},{"name":"up regulation of vasculature development","type":"exact"},{"name":"up-regulation of vascular system development","type":"related"},{"name":"up-regulation of vasculature development","type":"exact"},{"name":"upregulation of vascular system development","type":"related"},{"name":"upregulation of vasculature development","type":"exact"}],"termid":"GO:1904018"}


id: PBO:0029746
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_calcium_export","termid":"PBO:0029746"}


id: GO:0032252
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which a secretory granule is transported to, and/or maintained in, a specific location within the cell.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle localization","termid":"GO:0051648"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"secretory granule localization","synonyms":[{"name":"secretory granule clustering","type":"related"},{"name":"secretory granule localisation","type":"exact"}],"termid":"GO:0032252"}


id: PBO:0050645
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein 90 alpha family class A member 1","termid":"PBO:0050645"}


id: GO:0003107
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which angiotensin increases the rate of natriuresis indirectly via diuresis. Natriuresis is the process of renal sodium excretion.","definition_xrefs":["GOC:dph","GOC:tb","GOC:mtg_cardio"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of natriuresis by angiotensin (obsolete GO:0003107)","synonyms":[{"name":"angiotensin-mediated positive regulation of natriuresis","type":"exact"},{"name":"positive regulation of natriuresis by angiotensin","type":"exact"}],"termid":"GO:0003107"}


id: RO:HOM0000016
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Structural homology that involves a pseudogenic feature and its functional ancestor.","definition_xrefs":["SO:non_functional_homolog_of"],"direct_ancestors":[{"relation_name":"is_a","term_name":"in_structural_homology_relationship_with","termid":"RO:HOM0000006"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"in_non_functional_homology_relationship_with","synonyms":[{"name":"non functional homologous to","type":"exact"},{"name":"pseudogene","type":"broad"}],"termid":"RO:HOM0000016"}


id: PBO:0054987
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2401","termid":"PBO:0054987"}


id: FYPO:0002260
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which L-glutamate import into the cell is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal amino acid import","termid":"FYPO:0001596"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000257","FYPO:0000138","FYPO:0000002","FYPO:0001312"],"is_obsolete":false,"name":"normal glutamate import","synonyms":[{"name":"normal L-glutamate import across plasma membrane","type":"exact"},{"name":"normal L-glutamic acid import","type":"exact"},{"name":"normal glutamate import during mitotic cell cycle","type":"related"},{"name":"normal glutamate import during vegetative growth","type":"exact"},{"name":"normal glutamate import into cell","type":"exact"},{"name":"normal glutamate uptake","type":"exact"},{"name":"normal glutamic acid import","type":"exact"}],"termid":"FYPO:0002260"}


id: MONDO:0014198
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any mitochondrial DNA depletion syndrome in which the cause of the disease is a mutation in the FBXL4 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial DNA depletion syndrome, encephalomyopathic form","termid":"MONDO:0016796"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004069"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004069"],"is_obsolete":false,"name":"mitochondrial DNA depletion syndrome 13","secondary_identifiers":["MEDGEN:815922","NCIT:C172095","SCTID:765403009","GARD:13298","OMIM:615471","UMLS:C3809592","DOID:0080131","Orphanet:369897"],"synonyms":[{"name":"BXL4-related early-onset mitochondrial encephalopathy","type":"related"},{"name":"FBXL4 deficiency","type":"related"},{"name":"FBXL4 mitochondrial DNA depletion syndrome","type":"exact"},{"name":"FBXL4-related encephalomyopathic mitochondrial DNA depletion syndrome","type":"related"},{"name":"MTDPS13","type":"related"},{"name":"encephalomyopathic mitochondrial DNA depletion syndrome-13","type":"related"},{"name":"mitochondrial DNA depletion syndrome 13 (encephalomyopathic type)","type":"related"},{"name":"mitochondrial DNA depletion syndrome caused by mutation in FBXL4","type":"exact"},{"name":"mitochondrial DNA depletion syndrome type 13","type":"exact"},{"name":"mitochondrial DNA depletion syndrome, encephalomyopathic form with variable craniofacial anomalies","type":"related"},{"name":"mtDNA depletion syndrome, encephalomyopathic form with variable craniofacial anomalies","type":"exact"}],"termid":"MONDO:0014198","xrefs":{"Monarch":{"xref_id":"0014198"}}}


id: GO:0006210
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of thymine, 5-methyluracil, one of the two major pyrimidine bases present (as thymidine) in DNA but not found in RNA other than (as ribothymidine) in transfer RNA, where it is a minor base.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleobase catabolic process","termid":"GO:0006208"},{"relation_name":"is_a","term_name":"thymine metabolic process","termid":"GO:0019859"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"thymine catabolic process","synonyms":[{"name":"thymine breakdown","type":"exact"},{"name":"thymine catabolism","type":"exact"},{"name":"thymine degradation","type":"exact"}],"termid":"GO:0006210"}


id: PBO:0065713
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PVR cell adhesion molecule","termid":"PBO:0065713"}


id: MONDO:0007281
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any cataract (disease) in which the cause of the disease is a mutation in the CRYGD gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"early-onset non-syndromic cataract","termid":"MONDO:0011060"},{"relation_name":"excluded_subClassOf","term_name":"cataract - microcornea syndrome","termid":"MONDO:0015300"},{"relation_name":"is_a","term_name":"cataract","termid":"MONDO:0005129"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"cataract 4 multiple types","secondary_identifiers":["GARD:1144","MEDGEN:761925","UMLS:C3540850","DOID:0110234","OMIM:115700"],"synonyms":[{"name":"CCA3","type":"narrow"},{"name":"CRYGD cataract (disease)","type":"exact"},{"name":"CTRCT4","type":"exact"},{"name":"cataract (disease) caused by mutation in CRYGD","type":"exact"},{"name":"cataract 4 multiple types with or without microcornea","type":"exact"},{"name":"cataract 4, multiple types","type":"related"},{"name":"cataract 4, multiple types, with or without microcornea","type":"related"},{"name":"cataract, Nonnuclear polymorphic congenital","type":"related"},{"name":"cataract, congenital, cerulean type, 3","type":"related"},{"name":"cataract, crystalline aculeiform","type":"related"},{"name":"cataract, punctate, progressive juvenile-onset","type":"related"},{"name":"congenital cataract cerulean type 3","type":"narrow"}],"termid":"MONDO:0007281","xrefs":{"Monarch":{"xref_id":"0007281"}}}


id: GO:0052357
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways performed by an organism resulting in the breakdown of pectin in the symbiont cell wall. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["ISBN:0198547684"],"gene_count":0,"genotype_count":0,"name":"obsolete catabolism by host of symbiont cell wall pectin (obsolete GO:0052357)","termid":"GO:0052357"}


id: MONDO:0014186
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any retinitis pigmentosa in which the cause of the disease is a mutation in the ARL2BP gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinitis pigmentosa","termid":"MONDO:0019200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0004736"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0005066","MONDO:0004736"],"is_obsolete":false,"name":"retinitis pigmentosa with or without situs inversus","secondary_identifiers":["GARD:15965","DOID:0110419","ICD10CM:H35.5","MEDGEN:1658130","OMIM:615434","UMLS:C4747737"],"synonyms":[{"name":"ARL2BP retinitis pigmentosa","type":"exact"},{"name":"retinitis pigmentosa caused by mutation in ARL2BP","type":"exact"},{"name":"retinitis pigmentosa with or without situs inversus","type":"exact"}],"termid":"MONDO:0014186","xrefs":{"Monarch":{"xref_id":"0014186"}}}


id: PBO:0065887
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB35, member RAS oncogene family","termid":"PBO:0065887"}


id: PBO:0061955
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily A member 9 pseudogene","termid":"PBO:0061955"}


id: PBO:0070718
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L9 pseudogene 23","termid":"PBO:0070718"}


id: PATO:0000908
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000908 f2 sterile (obsolete PATO:0000908)","synonyms":[{"name":"F2 infertile","type":"related"}],"termid":"PATO:0000908"}


id: GO:0034040
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + lipid(in) = ADP + phosphate + lipid(out).","definition_xrefs":["GOC:BHF","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ATPase-coupled transmembrane transporter activity","termid":"GO:0042626"},{"relation_name":"is_a","term_name":"lipid transmembrane transporter activity","termid":"GO:0170055"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"ATPase-coupled lipid transmembrane transporter activity","synonyms":[{"name":"ATP-dependent lipid transmembrane transporter activity","type":"exact"},{"name":"lipid-transporting ATPase activity","type":"broad"}],"termid":"GO:0034040"}


id: PBO:0059997
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND4L pseudogene 17","termid":"PBO:0059997"}


id: FYPO:0003863
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of oxidation of one or more specific proteins, or of specific protein sites, is increased, resulting in the accumulation of proteins with oxidative modifications including carbonylated proteins.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein modification","termid":"FYPO:0002499"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0002494","FYPO:0001985","FYPO:0002274","FYPO:0005447"],"is_obsolete":false,"name":"increased protein oxidation","synonyms":[{"name":"accumulation of carbonylated proteins","type":"related"},{"name":"increased level of disulfides","type":"related"},{"name":"increased level of oxidised thiols in proteins","type":"related"},{"name":"increased level of oxidized protein thiols","type":"related"}],"termid":"FYPO:0003863"}


id: GO:0046251
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of limonene (4-isopropenyl-1-methyl-cyclohexene), a monocyclic monoterpene.","definition_xrefs":["PMID:10224006"],"direct_ancestors":[{"relation_name":"is_a","term_name":"limonene metabolic process","termid":"GO:0018923"},{"relation_name":"is_a","term_name":"monoterpene catabolic process","termid":"GO:0043694"},{"relation_name":"is_a","term_name":"olefinic compound catabolic process","termid":"GO:0120256"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"limonene catabolic process","synonyms":[{"name":"limonene breakdown","type":"exact"},{"name":"limonene catabolism","type":"exact"},{"name":"limonene degradation","type":"exact"}],"termid":"GO:0046251"}


id: GO:0021583
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structure of the pons is generated and organized. The pons lies above the medulla and next to the cerebellum. The pons conveys information about movement from the cerebral hemisphere to the cerebellum.","definition_xrefs":["ISBN:0838580343","GOC:dgh","GOC:jid","GOC:dph","GO_REF:0000021","GOC:cls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"},{"relation_name":"part_of","term_name":"pons development","termid":"GO:0021548"},{"relation_name":"part_of","term_name":"hindbrain morphogenesis","termid":"GO:0021575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pons morphogenesis","termid":"GO:0021583"}


id: MONDO:0019209
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disease due to a virus transmitted by an arthropod).","definition_xrefs":["Orphanet:79139"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mosquito-borne viral encephalitis","termid":"MONDO:0020601"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Japanese encephalitis","secondary_identifiers":["UMLS:C0014057","GARD:6797","MEDGEN:4032","SCTID:52947006","icd11.foundation:961032639","MESH:D004672","NCIT:C34577","DOID:10844","NORD:1088","EFO:0007332","ICD9:062.0","MedDRA:10014596"],"synonyms":[{"name":"Encephalitis, Japanese","type":"exact"},{"name":"JE","type":"related"},{"name":"Japanese B encephalitis","type":"exact"}],"termid":"MONDO:0019209","xrefs":{"Monarch":{"xref_id":"0019209"}}}


id: PBO:0030168
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-cell_lysis","termid":"PBO:0030168"}


id: GO:1904986
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of quinolinate biosynthetic process.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","GOC:bf","GOC:PARL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of biosynthetic process","termid":"GO:0009891"},{"relation_name":"is_a","term_name":"positive regulation of small molecule metabolic process","termid":"GO:0062013"},{"relation_name":"is_a","term_name":"regulation of quinolinate biosynthetic process","termid":"GO:1904984"},{"relation_name":"positively_regulates","term_name":"quinolinate biosynthetic process","termid":"GO:0019805"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"positive regulation of quinolinate biosynthetic process","synonyms":[{"name":"activation of quinolinate anabolism","type":"narrow"},{"name":"activation of quinolinate biosynthesis","type":"narrow"},{"name":"activation of quinolinate biosynthetic process","type":"narrow"},{"name":"activation of quinolinate formation","type":"narrow"},{"name":"activation of quinolinate synthesis","type":"narrow"},{"name":"positive regulation of quinolinate anabolism","type":"exact"},{"name":"positive regulation of quinolinate biosynthesis","type":"exact"},{"name":"positive regulation of quinolinate formation","type":"exact"},{"name":"positive regulation of quinolinate synthesis","type":"exact"},{"name":"up regulation of quinolinate anabolism","type":"exact"},{"name":"up regulation of quinolinate biosynthesis","type":"exact"},{"name":"up regulation of quinolinate biosynthetic process","type":"exact"},{"name":"up regulation of quinolinate formation","type":"exact"},{"name":"up regulation of quinolinate synthesis","type":"exact"},{"name":"up-regulation of quinolinate anabolism","type":"exact"},{"name":"up-regulation of quinolinate biosynthesis","type":"exact"},{"name":"up-regulation of quinolinate biosynthetic process","type":"exact"},{"name":"up-regulation of quinolinate formation","type":"exact"},{"name":"up-regulation of quinolinate synthesis","type":"exact"},{"name":"upregulation of quinolinate anabolism","type":"exact"},{"name":"upregulation of quinolinate biosynthesis","type":"exact"},{"name":"upregulation of quinolinate biosynthetic process","type":"exact"},{"name":"upregulation of quinolinate formation","type":"exact"},{"name":"upregulation of quinolinate synthesis","type":"exact"}],"termid":"GO:1904986"}


id: PBO:0063889
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol glycan anchor biosynthesis class P pseudogene 2","termid":"PBO:0063889"}


id: PBO:0028247
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_medial_cortical_node_movement_during_contractile_ring_assembly","termid":"PBO:0028247"}


id: GO:0070167
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of biomineral tissue development, the formation of hard tissues that consist mainly of inorganic compounds.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of multicellular organismal development","termid":"GO:2000026"},{"relation_name":"regulates","term_name":"biomineral tissue development","termid":"GO:0031214"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of biomineral tissue development","termid":"GO:0070167"}


id: GO:0090235
data:
  {"annotated_genes":["SJAG_05290","SJAG_03126","SJAG_03048","SJAG_00082","SJAG_01805","SJAG_04280","SJAG_04140","SJAG_01837"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[102681],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902424"},{"annotations":[112293,116338,105505],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902425"},{"annotations":[90324,117008,102701,94130,111531],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140429"}]},"cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of metaphase plate congression, the alignment of chromosomes at the metaphase plate, a plane halfway between the poles of the spindle.","definition_xrefs":["GOC:dph","GOC:ascb_2009","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of localization","termid":"GO:0032879"},{"relation_name":"regulates","term_name":"metaphase chromosome alignment","termid":"GO:0051310"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00082":null,"SJAG_01805":null,"SJAG_01837":null,"SJAG_03048":null,"SJAG_03126":null,"SJAG_04140":null,"SJAG_04280":null,"SJAG_05290":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of metaphase plate congression","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of chromosome congression","type":"exact"}],"termid":"GO:0090235","terms_by_termid":{"GO:0140429":null,"GO:1902424":null,"GO:1902425":null}}


id: MONDO:0019862
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A condition where the heart is in the correct anatomic position but some or all of the other thoracoabdominal viscera are in the opposite lateral orientation.","definition_xrefs":["NCIT:C111647"],"direct_ancestors":[{"relation_name":"is_a","term_name":"visceral heterotaxy","termid":"MONDO:0018677"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"levocardia","secondary_identifiers":["MedDRA:10071015","MESH:D007979","Orphanet:95854","GARD:12032","SCTID:205769006","UMLS:C0023569","ICD10CM:Q24.1","icd11.foundation:848076902","MEDGEN:7331"],"synonyms":[{"name":"Isolated levocardia with situs inversus","type":"narrow"},{"name":"Situs inversus with levocardia","type":"narrow"},{"name":"levocardia-situs inversus","type":"exact"}],"termid":"MONDO:0019862","xrefs":{"Monarch":{"xref_id":"0019862"}}}


id: PBO:0004944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-directed RNA polymerase I and III subunit Rpc40","termid":"PBO:0004944"}


id: MONDO:0003920
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete gastric small cell carcinoma (obsolete MONDO:0003920)","termid":"MONDO:0003920","xrefs":{"Monarch":{"xref_id":"0003920"}}}


id: MOD:00838
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes three (1)H protium atoms with three (2)H deuterium atoms to produce 3x(2)H labeled L-leucine.","definition_xrefs":["Unimod:262#L"],"direct_ancestors":[{"relation_name":"is_a","term_name":"deuterium trisubstituted residue","termid":"MOD:00585"},{"relation_name":"is_a","term_name":"modified L-leucine residue","termid":"MOD:00911"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3x(2)H labeled L-leucine","synonyms":[{"name":"D(H)3Leu","type":"exact"},{"name":"Label:2H(3)","type":"related"},{"name":"Trideuteration","type":"related"}],"termid":"MOD:00838"}


id: MONDO:0008040
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A myeloid proliferation occurring in newborns with Down syndrome. It is clinically and morphologically indistinguishable from acute myeloid leukemia and is associated with GATA1 mutations. The blasts display morphologic and immunophenotypic features of megakaryocytic lineage. In the majority of patients the myeloid proliferation undergoes spontaneous remission.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myeloproliferative neoplasm","termid":"MONDO:0020076"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0004992","MONDO:0005046"],"is_obsolete":false,"name":"transient myeloproliferative syndrome","secondary_identifiers":["DOID:0060888","GARD:12765","HP:0005534","ONCOTREE:TAM","Orphanet:420611","SCTID:721307000","MEDGEN:331782","MESH:C563551","UMLS:C1834582","OMIM:159595","NCIT:C82339","ICDO:9898/1"],"synonyms":[{"name":"MST","type":"exact"},{"name":"Mst","type":"related"},{"name":"TAM","type":"exact"},{"name":"TMD","type":"exact"},{"name":"Transient abnormal myelopoiesis associated with Down syndrome","type":"exact"},{"name":"leukemia, transient","type":"related"},{"name":"leukemia, transient, of Down syndrome","type":"exact"},{"name":"myeloproliferative syndrome, transient","type":"related"},{"name":"transient abnormal myelopoiesis","type":"exact"},{"name":"transient leukaemia","type":"exact"},{"name":"transient leukemia","type":"exact"},{"name":"transient leurkemia of Down syndrome","type":"exact"},{"name":"transient myeloproliferative disease","type":"exact"},{"name":"transient myeloproliferative disorder","type":"exact"},{"name":"transient myeloproliferative syndrome","type":"exact"},{"name":"transient myeloproliferative syndrome (disease)","type":"exact"}],"termid":"MONDO:0008040","xrefs":{"Monarch":{"xref_id":"0008040"}}}


id: PBO:0086349
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"P-type ATPase, ion transporter of the ER membrane; required to maintain normal lipid and sterol composition of intracellular compartments and proper targeting of mitochondrial outer membrane tail-anchored proteins; involved in ER function and Ca2+ homeostasis; required for regulating Hmg2p degradation; confers sensitivity to a killer toxin (SMKT) produced by Pichia farinosa KK1; null mutation is complemented by human Parkinson disease-related ATP13A1","termid":"PBO:0086349"}


id: MONDO:0016057
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Brain tissue herniation through a congenital or acquired defect in the skull. The majority of congenital encephaloceles occur in the occipital or frontal regions. Clinical features include a protuberant mass that may be pulsatile. The quantity and location of protruding neural tissue determines the type and degree of neurologic deficit. Visual defects, psychomotor developmental delay, and persistent motor deficits frequently occur.","definition_xrefs":["MESH:D004677"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cephalocele","termid":"MONDO:0017078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"isolated encephalocele","secondary_identifiers":["GARD:6333","MEDGEN:1830107","UMLS:C5680519","MedDRA:10014617","Orphanet:199647","NORD:1089"],"synonyms":[{"name":"Encephalocele","type":"exact"},{"name":"bifid cranium","type":"related"},{"name":"craniocele","type":"related"},{"name":"cranium bifidum","type":"related"},{"name":"encephalocele","type":"related"}],"termid":"MONDO:0016057","xrefs":{"Monarch":{"xref_id":"0016057"}}}


id: PBO:0030288
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cellular_sulfide_level","termid":"PBO:0030288"}


id: PBO:0078714
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Leu (anticodon CAG) 2-2","termid":"PBO:0078714"}


id: PBO:0029277
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_ubiquitin_ligase_activity_during_mitotic_metaphase","termid":"PBO:0029277"}


id: PBO:0075854
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SSX family member 3","termid":"PBO:0075854"}


id: PBO:0116276
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytosolic delta 1-pyrroline-5-carboxylate reductase; catalyzes the last step in proline biosynthesis","termid":"PBO:0116276"}


id: GO:0047603
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acetoacetyl-CoA + H2O = acetoacetate + CoA + H+.","definition_xrefs":["RHEA:15673","EC:3.1.2.11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acyl-CoA hydrolase activity","termid":"GO:0016289"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824","GO:0016788"],"is_obsolete":false,"name":"acetoacetyl-CoA hydrolase activity","secondary_identifiers":["KEGG_REACTION:R01358","MetaCyc:ACETOACETYL-COA-HYDROLASE-RXN"],"synonyms":[{"name":"acetoacetyl CoA deacylase activity","type":"related"},{"name":"acetoacetyl coenzyme A deacylase activity","type":"related"},{"name":"acetoacetyl coenzyme A hydrolase activity","type":"related"}],"termid":"GO:0047603"}


id: PBO:0051614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 36 receptor antagonist","termid":"PBO:0051614"}


id: PBO:0040357
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase membrane subunit g pseudogene 6","termid":"PBO:0040357"}


id: GO:0097152
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any apoptotic process in a mesenchymal cell. A mesenchymal cell is a loosely associated cell that is part of the connective tissue in an organism. Mesenchymal cells give rise to more mature connective tissue cell types.","definition_xrefs":["GOC:yaf","GOC:mtg_apoptosis","CL:0000134","PMID:18231833"],"direct_ancestors":[{"relation_name":"is_a","term_name":"apoptotic process","termid":"GO:0006915"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesenchymal cell apoptotic process","synonyms":[{"name":"mesenchymal cell apoptosis","type":"narrow"}],"termid":"GO:0097152"}


id: GO:0001657
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the ureteric bud over time, from its formation to the mature structure.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesonephric tubule development","termid":"GO:0072164"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ureteric bud development","termid":"GO:0001657"}


id: SO:0000211
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A primary transcript encoding alanyl tRNA.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA_primary_transcript","termid":"SO:0000210"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alanine_tRNA_primary_transcript","synonyms":[{"name":"alanine tRNA primary transcript","type":"exact"}],"termid":"SO:0000211"}


id: RO:0002014
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A relationship that holds between a GO molecular function and a component of that molecular function that negatively regulates the activity of the whole.  More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is negatively regulated by B.","direct_ancestors":[{"relation_name":"is_a","term_name":"has_regulatory_component_activity","termid":"RO:0002013"},{"relation_name":"is_a","term_name":"negatively_regulated_by","termid":"RO:0002335"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_negative_regulatory_component_activity","termid":"RO:0002014"}


id: PBO:0090772
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coatomer alpha subunit Cop1","termid":"PBO:0090772"}


id: PBO:0057780
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 2682","termid":"PBO:0057780"}


id: PBO:0045686
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynein light chain LC8-type 1 pseudogene 6","termid":"PBO:0045686"}


id: MOD:01116
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to S-farnesyl-L-cysteine methyl ester.","definition_xrefs":["PubMed:15609361","RESID:AA0102#var","RESID:AA0105#var"],"direct_ancestors":[{"relation_name":"has_functional_parent","term_name":"S-farnesyl-L-cysteine","termid":"MOD:00111"},{"relation_name":"has_functional_parent","term_name":"L-cysteine methyl ester","termid":"MOD:00114"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"S-farnesyl-L-cysteine methyl ester","synonyms":[{"name":"SFarnOMeCys","type":"exact"}],"termid":"MOD:01116"}


id: GO:0004817
data:
  {"annotated_genes":["SJAG_00420"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[72696],"is_not":false,"summary":null,"term":"GO:0004817"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + L-cysteine + tRNA(Cys) = AMP + diphosphate + L-cysteinyl-tRNA(Cys).","definition_xrefs":["EC:6.1.1.16"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoacyl-tRNA ligase activity","termid":"GO:0004812"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00420":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0140101"}],"interesting_parent_ids":["GO:0140101","GO:0003824","GO:0003674","GO:0016874","GO:0140098"],"is_obsolete":false,"name":"cysteine-tRNA ligase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["RHEA:17773","MetaCyc:CYSTEINE--TRNA-LIGASE-RXN","Reactome:R-HSA-380158","Reactome:R-HSA-379887"],"synonyms":[{"name":"L-cysteine:tRNACys ligase (AMP-forming)","type":"related"},{"name":"cysteine translase activity","type":"related"},{"name":"cysteinyl-tRNA synthetase activity","type":"exact"},{"name":"cysteinyl-transfer ribonucleate synthetase activity","type":"related"},{"name":"cysteinyl-transferRNA synthetase activity","type":"related"}],"termid":"GO:0004817","terms_by_termid":{"GO:0004817":null}}


id: MONDO:1010265
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Renal hypoplasia, unilateral that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"renal hypoplasia, non-human animal","termid":"MONDO:1010264"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"renal hypoplasia, unilateral, non-human animal","secondary_identifiers":["OMIA:000855"],"termid":"MONDO:1010265","xrefs":{"Monarch":{"xref_id":"1010265"}}}


id: PBO:0026631
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_establishment_of_mitotic_sister_chromatid_cohesion","termid":"PBO:0026631"}


id: PBO:0052141
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KCNH7 antisense RNA 1","termid":"PBO:0052141"}


id: FYPO:0005978
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which spliced forms of RNAs transcribed from dg repeats in the centromere outer repeat region are present at higher levels than normal.","definition_xrefs":["PomBase:mah","PMID:28231281"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased cen-dg RNA level","termid":"FYPO:0007339"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0006551"],"is_obsolete":false,"name":"increased spliced cen-dg RNA level","synonyms":[{"name":"increased level of spliced cen-dg RNA","type":"exact"},{"name":"increased level of spliced cen-dg transcripts","type":"exact"},{"name":"increased level of spliced centromeric dg repeat RNA","type":"exact"},{"name":"increased level of spliced centromeric dg repeat transcripts","type":"exact"},{"name":"increased spliced cen-dg RNA accumulation","type":"related"},{"name":"increased spliced cen-dg RNA level during mitotic cell cycle","type":"related"},{"name":"increased spliced cen-dg RNA level during vegetative growth","type":"exact"},{"name":"increased spliced cen-dg transcript level","type":"exact"}],"termid":"FYPO:0005978"}


id: PBO:0070113
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 27 pseudogene","termid":"PBO:0070113"}


id: PBO:0001949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"human hmmtag2 homolog","termid":"PBO:0001949"}


id: MONDO:0006316
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A group of nervous system tumors which display neuronal differentiation. It includes tumors that are composed of immature round cells and tumors that display advanced differentiation and the formation of ganglion cells.","definition_xrefs":["NCIT:C6963"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primitive neuroectodermal tumor","termid":"MONDO:0005462"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuroblastic tumor","secondary_identifiers":["UMLS:C1334953","MEDGEN:233228","EFO:1000393"],"synonyms":[{"name":"neuroblastic tumor","type":"exact"}],"termid":"MONDO:0006316","xrefs":{"Monarch":{"xref_id":"0006316"}}}


id: GO:0071170
data:
  {"annotated_genes":["SJAG_00247","SJAG_04855","SJAG_00073"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[115357],"is_not":false,"summary":null,"term":"GO:0071170"},{"annotations":[102593],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071946"},{"annotations":[93681],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071171"}]},"cv_name":"biological_process","definition":"A DNA replication termination process that takes place at a specific termination site.","definition_xrefs":["GOC:mah","PMID:12009298","PMID:18723894"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA replication termination","termid":"GO:0006274"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00073":null,"SJAG_00247":null,"SJAG_04855":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006260"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006260","GO:0006259","GO:0008150"],"is_obsolete":false,"name":"site-specific DNA replication termination","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0071170","terms_by_termid":{"GO:0071170":null,"GO:0071171":null,"GO:0071946":null}}


id: MONDO:1012611
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A liver disorder characterized by chronic conjugated hyperbilirubinemia and gross dark brown to black discoloration of the liver that occurs in sheep.","definition_xrefs":["OMIA:000497-9940"],"direct_ancestors":[{"relation_name":"is_a","term_name":"liver disorder, non-human animal","termid":"MONDO:1012967"},{"relation_name":"is_a","term_name":"hyperbilirubinemia, non-human animal","termid":"MONDO:1012974"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conjugated hyperbilirubinemia, sheep","synonyms":[{"name":"hyperbilirubinaemia II, sheep","type":"related"}],"termid":"MONDO:1012611","xrefs":{"Monarch":{"xref_id":"1012611"}}}


id: PBO:0088679
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trifunctional dihydropteroatesynthase/2-amino-4-hydroxy-6-hydro xymethyldihydropteridinediphosphokinase/dihydroneopterin aldolase Fol1","termid":"PBO:0088679"}


id: PBO:0040730
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"beta-carotene oxygenase 2","termid":"PBO:0040730"}


id: GO:0010603
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of the aggregation, arrangement and bonding together of proteins and RNA molecules to form a cytoplasmic mRNA processing body.","definition_xrefs":["GOC:tb","GOC:dph","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of organelle assembly","termid":"GO:1902115"},{"relation_name":"regulates","term_name":"P-body assembly","termid":"GO:0033962"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"regulation of cytoplasmic mRNA processing body assembly","termid":"GO:0010603"}


id: GO:0003675
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete protein (obsolete GO:0003675)","synonyms":[{"name":"protein","type":"exact"}],"termid":"GO:0003675"}


id: GO:0034562
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2,2-bis(4-hydroxyphenyl)-1-propanol + NADH + H+ + O2 = 2,3-bis(4-hydroxyphenyl)-1,2-propanediol + NAD+ + H2O.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 2,2-bis(4-hydroxyphenyl)-1-propanol hydroxylase activity (obsolete GO:0034562)","termid":"GO:0034562"}


id: FYPO:0003415
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone H4 acetylation occurs to a greater extent than normal at the central core of centromeric regions.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H4 acetylation during vegetative growth","termid":"FYPO:0002365"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0002274","FYPO:0002494","FYPO:0001985"],"is_obsolete":false,"name":"increased histone H4 acetylation at centromere central core during vegetative growth","synonyms":[{"name":"increased histone H4 acetylation at centromere central core during mitotic cell cycle","type":"related"},{"name":"increased histone H4 acetylation at centromeric central core during vegetative growth","type":"exact"}],"termid":"FYPO:0003415"}


id: PBO:0065881
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB31, member RAS oncogene family","termid":"PBO:0065881"}


id: PBO:0050192
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosome binding domain 1 pseudogene","termid":"PBO:0050192"}


id: GO:2000257
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of protein activation cascade.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein maturation","termid":"GO:1903317"},{"relation_name":"regulates","term_name":"protein activation cascade","termid":"GO:0072376"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0051604"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0051604","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of protein activation cascade","synonyms":[{"name":"regulation of protein activation pathway","type":"exact"},{"name":"regulation of protein activitory cascade","type":"exact"}],"termid":"GO:2000257"}


id: GO:0048650
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which individuals, having the potential to develop any of several distinct developmental paths, have their individual developmental fate determined in response to environmental cues. Individuals with distinct developmental fates perform different functions in a colony of social insects.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"caste determination","termid":"GO:0048648"},{"relation_name":"is_a","term_name":"polyphenic determination, influence by environmental factors","termid":"GO:0048651"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"caste determination, influence by environmental factors","termid":"GO:0048650"}


id: _global:negatively_regulates_characteristic
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"A relationship that holds between a process and a characteristic in which process (P) negatively regulates characteristic (C) iff: P results in a decrease in the intensity or magnitude of C.","direct_ancestors":[{"relation_name":"is_a","term_name":"regulates_characteristic","termid":"_global:regulates_characteristic"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"negatively_regulates_characteristic","secondary_identifiers":["RO:0019002"],"termid":"_global:negatively_regulates_characteristic"}


id: PBO:0041869
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calsequestrin 1","termid":"PBO:0041869"}


id: MONDO:0010332
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An X-linked syndromic intellectual disability characterized by moderate intellectual deficit, marked cubitus valgus, mild microcephaly, a short philtrum, deep-set eyes, downslanting palpebral fissures and multiple nevi. Less than ten individuals have been described so far. Transmission is thought to be X-linked recessive.","definition_xrefs":["Orphanet:85280"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital nervous system disorder","termid":"MONDO:0002320"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"},{"relation_name":"is_a","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"X-linked intellectual disability-cubitus valgus-dysmorphism syndrome","secondary_identifiers":["MEDGEN:1801270","OMIM:300471","UMLS:C5677056","GARD:16745","MESH:C564510"],"synonyms":[{"name":"Cubitus valgus with mental retardation and unusual facies, X-linked recessive","type":"exact"},{"name":"cubitus valgus with intellectual disability and unusual facies","type":"related"},{"name":"cubitus valgus with mental retardation and unusual facies","type":"related"}],"termid":"MONDO:0010332","xrefs":{"Monarch":{"xref_id":"0010332"}}}


id: MONDO:0014718
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any early infantile epileptic encephalopathy in which the cause of the disease is a mutation in the SLC12A5 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"malignant migrating partial seizures of infancy","termid":"MONDO:0017385"},{"relation_name":"is_a","term_name":"neonatal-onset developmental and epileptic encephalopathy","termid":"MONDO:0100455"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"},{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092","MONDO:0005027"],"is_obsolete":false,"name":"developmental and epileptic encephalopathy, 34","secondary_identifiers":["OMIM:616645","GARD:16147","MEDGEN:899149","DOID:0080460","UMLS:C4225257"],"synonyms":[{"name":"DEE34","type":"exact"},{"name":"EIEE34","type":"exact"},{"name":"SLC12A5 early infantile epileptic encephalopathy","type":"exact"},{"name":"developmental and epileptic encephalopathy 34","type":"exact"},{"name":"early infantile epileptic encephalopathy caused by mutation in SLC12A5","type":"exact"},{"name":"epileptic encephalopathy, early infantile, 34","type":"exact"},{"name":"epileptic encephalopathy, early infantile, 34; EIEE34","type":"exact"},{"name":"epileptic encephalopathy, early infantile, type 34","type":"exact"}],"termid":"MONDO:0014718","xrefs":{"Monarch":{"xref_id":"0014718"}}}


id: SO:0001961
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A modified DNA cytosine base feature, modified by a formyl group at the 5 carbon.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified_cytosine","termid":"SO:0001963"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5_formylcytosine","secondary_identifiers":["http:http\\://www.pacificbiosciences.com/pdf/WP_Detecting_DNA_Base_Modifications_Using_SMRT_Sequencing.pdf"],"synonyms":[{"name":"5-fC","type":"exact"},{"name":"5-formylcytosine","type":"exact"}],"termid":"SO:0001961"}


id: GO:0097391
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of chemokine (C-X-C motif) ligand 13 (CXCL13) due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:rv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chemokine production","termid":"GO:0032602"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"chemokine (C-X-C motif) ligand 13 production","synonyms":[{"name":"CXCL13 production","type":"exact"}],"termid":"GO:0097391"}


id: PBO:0047495
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fem-1 homolog A pseudogene 3","termid":"PBO:0047495"}


id: FYPO:0001699
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to 4,4',4''-(4-propylpyrazole-1,3,5-triyl)trisphenol (PPT). Cells stop growing (and may die) at a concentration of PPT that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002683"}],"interesting_parent_ids":["FYPO:0002683","FYPO:0000003","FYPO:0001985","FYPO:0000139","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to PPT","synonyms":[{"name":"hypersensitive to PPT","type":"exact"},{"name":"sensitive to 4,4',4''-(4-propylpyrazole-1,3,5-triyl)trisphenol","type":"exact"},{"name":"sensitive to PPT during mitotic cell cycle","type":"related"},{"name":"sensitive to PPT during vegetative growth","type":"exact"}],"termid":"FYPO:0001699"}


id: MONDO:0005079
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A usually exophytic mass attached to the underlying tissue by a broad base or a thin stalk. Polyps can be neoplastic or non-neoplastic. Neoplastic polyps usually represent proliferations of the epithelium, and are commonly seen in the gastrointestinal tract. Polyps of the gastrointestinal tract are often called adenomas, are associated with dysplasia, and may eventually transform into carcinomas. Non-neoplastic polyps may be inflammatory, degenerative, or the result of malformations.","definition_xrefs":["NCIT:C3340"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"neoplasm","termid":"MONDO:0005070"},{"relation_name":"is_a","term_name":"cancer or benign tumor","termid":"MONDO:0045024"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polyp","secondary_identifiers":["UMLS:C0032584","ICD10CM:N84","EFO:0000662","MEDGEN:19397","MESH:D011127","SCTID:441456002"],"synonyms":[{"name":"polyp","type":"exact"}],"termid":"MONDO:0005079","xrefs":{"Monarch":{"xref_id":"0005079"}}}


id: PBO:0001262
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytoplasmic vesicle protein, Vid24 family (predicted)","termid":"PBO:0001262"}


id: MONDO:0008988
data:
  {"annotated_genes":["SJAG_04577"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87384],"is_not":false,"summary":null,"term":"MONDO:0008988"}]},"cv_name":"mondo","definition":"Citrullinemia type I is a rare autosomal recessive urea cycle defect characterized biologically by hyperammonemia and clinically by progressive lethargy, poor feeding and vomiting in the neonatal form (Acute neonatal citrullinemia type I) and by variable hyperammonemia in the later-onset form (adult-onset citrullinemia type I).","definition_xrefs":["Orphanet:247525"],"direct_ancestors":[{"relation_name":"is_a","term_name":"citrullinemia","termid":"MONDO:0015991"},{"relation_name":"is_a","term_name":"urea cycle disorder or inherited hyperammonemia","termid":"MONDO:0800153"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04577":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0004736","MONDO:0005066"],"is_obsolete":false,"name":"citrullinemia type I","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["SCTID:398680004","UMLS:C4721769","MEDGEN:1648491","DOID:0070340","NANDO:2200480","OMIM:215700","NCIT:C150601","MedDRA:10058298","GARD:6114","NANDO:1200805"],"synonyms":[{"name":"ASS deficiency","type":"exact"},{"name":"CTLN1","type":"exact"},{"name":"CTNL1","type":"related"},{"name":"Citrullinuria","type":"related"},{"name":"argininosuccinate synthase deficiency","type":"exact"},{"name":"argininosuccinate synthetase deficiency","type":"exact"},{"name":"argininosuccinic acid synthase deficiency","type":"exact"},{"name":"argininosuccinic acid synthetase deficiency","type":"exact"},{"name":"citrullinemia","type":"broad"},{"name":"citrullinemia 1","type":"related"},{"name":"citrullinemia type 1","type":"exact"},{"name":"citrullinemia type I","type":"exact"},{"name":"citrullinemia, classic","type":"related"},{"name":"citrullinemia, type 1","type":"related"},{"name":"classic citrullinemia","type":"exact"}],"termid":"MONDO:0008988","terms_by_termid":{"MONDO:0008988":null},"xrefs":{"Monarch":{"xref_id":"0008988"}}}


id: MONDO:0004318
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An aggressive small cell neuroendocrine carcinoma that arises from the ovary. Morphologically, it resembles the small cell carcinoma that arises from the lung.","definition_xrefs":["NCIT:C40440"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ovarian small cell carcinoma","termid":"MONDO:0003795"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"pulmonary type ovarian small cell carcinoma","secondary_identifiers":["UMLS:C1518737","DOID:7650","MEDGEN:309517"],"synonyms":[{"name":"ovarian small cell carcinoma, pulmonary type","type":"exact"}],"termid":"MONDO:0004318","xrefs":{"Monarch":{"xref_id":"0004318"}}}


id: GO:1902308
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of peptidyl-serine dephosphorylation.","definition_xrefs":["GOC:mtg_cardiac_conduct_nov11","PMID:11953308","GOC:BHF","GOC:rl","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of peptidyl-serine dephosphorylation (obsolete GO:1902308)","termid":"GO:1902308"}


id: FYPO:0007250
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of lipid binding by a gene product (usually a protein) in a mutant is abnormal. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal molecular function","termid":"FYPO:0000707"},{"relation_name":"is_a","term_name":"binding phenotype","termid":"FYPO:0001092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0001985","FYPO:0000707"],"is_obsolete":false,"name":"abnormal lipid binding","termid":"FYPO:0007250"}


id: MONDO:0859193
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"eye disorder","termid":"MONDO:0005328"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"neuroocular syndrome","secondary_identifiers":["MEDGEN:1790414","OMIMPS:619539","UMLS:C5551362"],"termid":"MONDO:0859193","xrefs":{"Monarch":{"xref_id":"0859193"}}}


id: GO:0002612
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of plasmacytoid dendritic cell antigen processing and presentation.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of dendritic cell antigen processing and presentation","termid":"GO:0002606"},{"relation_name":"is_a","term_name":"regulation of plasmacytoid dendritic cell antigen processing and presentation","termid":"GO:0002610"},{"relation_name":"positively_regulates","term_name":"plasmacytoid dendritic cell antigen processing and presentation","termid":"GO:0002470"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of plasmacytoid dendritic cell antigen processing and presentation","synonyms":[{"name":"activation of plasmacytoid dendritic cell antigen processing and presentation","type":"narrow"},{"name":"stimulation of plasmacytoid dendritic cell antigen processing and presentation","type":"narrow"},{"name":"up regulation of plasmacytoid dendritic cell antigen processing and presentation","type":"exact"},{"name":"up-regulation of plasmacytoid dendritic cell antigen processing and presentation","type":"exact"},{"name":"upregulation of plasmacytoid dendritic cell antigen processing and presentation","type":"exact"}],"termid":"GO:0002612"}


id: PBO:0029442
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_vegetative_cell_with_abnormal_cell_morphology","termid":"PBO:0029442"}


id: PBO:0076337
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synaptotagmin 5","termid":"PBO:0076337"}


id: PBO:0001044
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RING-BoX protein","termid":"PBO:0001044"}


id: MONDO:0017244
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pseudoxanthomatous diffuse cutaneous mastocytosis (PDCM) is a rare form of diffuse cutaneous mastocytosis (DCM) characterized by yellow-orange infiltrated and xanthogranuloma-like lesions with only limited blistering.","definition_xrefs":["Orphanet:280794"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diffuse cutaneous mastocytosis","termid":"MONDO:0019315"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570","MONDO:0005093"],"is_obsolete":false,"name":"pseudoxanthomatous diffuse cutaneous mastocytosis","secondary_identifiers":["UMLS:C5679949","MEDGEN:1842453","GARD:21089"],"synonyms":[{"name":"Pseudoxanthomatous DCM","type":"exact"},{"name":"infiltrative small vesicular DCM","type":"exact"},{"name":"infiltrative small vesicular diffuse cutaneous mastocytosis","type":"exact"}],"termid":"MONDO:0017244","xrefs":{"Monarch":{"xref_id":"0017244"}}}


id: GO:0160141
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: uridine(955/2504/2580) in 23S rRNA = pseudouridine(955/2504/2580) in 23S rRNA.","definition_xrefs":["EC:5.4.99.24","RHEA:42528"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA pseudouridine synthase activity","termid":"GO:0120159"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016853","GO:0140098","GO:0003824"],"is_obsolete":false,"name":"23S rRNA pseudouridine(955/2504/2580) synthase activity","termid":"GO:0160141"}


id: GO:0018744
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: limonene-1,2-epoxide + H2O = limonene-1,2-diol. Other substrates include alicyclic and 1-methyl-substituted epoxides, such as 1-methylcyclohexene oxide, indene oxide and cyclohexene oxide.","definition_xrefs":["EC:3.3.2.8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epoxide hydrolase activity","termid":"GO:0004301"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"limonene-1,2-epoxide hydrolase activity","secondary_identifiers":["UM-BBD_reactionID:r0734","MetaCyc:3.3.2.8-RXN","RHEA:10700"],"synonyms":[{"name":"limonene oxide hydrolase activity","type":"related"}],"termid":"GO:0018744"}


id: MOD:01009
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-proline residue","termid":"MOD:00915"},{"relation_name":"is_a","term_name":"didehydrogenated residue","termid":"MOD:01888"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dehydrogenated proline","termid":"MOD:01009"}


id: PBO:0001226
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Arv1-like family protein Arv1 (predicted)","termid":"PBO:0001226"}


id: GO:0032768
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the activity of a monooxygenase.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of monooxygenase activity (obsolete GO:0032768)","termid":"GO:0032768"}


id: MONDO:0018584
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete placental insufficiency (obsolete MONDO:0018584)","termid":"MONDO:0018584","xrefs":{"Monarch":{"xref_id":"0018584"}}}


id: GO:0048750
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the compound eye corneal lens are generated and organized.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"},{"relation_name":"part_of","term_name":"compound eye morphogenesis","termid":"GO:0001745"},{"relation_name":"part_of","term_name":"compound eye corneal lens development","termid":"GO:0048058"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"compound eye corneal lens morphogenesis","termid":"GO:0048750"}


id: GO:0102360
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: UDP-alpha-D-glucose(2-) + 7,8-dihydroxycoumarin = UDP(3-) + 3-O-beta-D-glucosyl-daphnetin + H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete daphnetin 3-O-glucosyltransferase activity (obsolete GO:0102360)","termid":"GO:0102360"}


id: PBO:0042618
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromatin licensing and DNA replication factor 1","termid":"PBO:0042618"}


id: GO:1903048
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of acetylcholine-gated cation channel activity.","definition_xrefs":["GO_REF:0000059","GOC:PARL","GOC:bf","GOC:TermGenie","PMID:21718690"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation of excitatory postsynaptic potential","termid":"GO:0098815"},{"relation_name":"is_a","term_name":"regulation of postsynaptic neurotransmitter receptor activity","termid":"GO:0098962"},{"relation_name":"is_a","term_name":"regulation of cation channel activity","termid":"GO:2001257"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0055085","GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of acetylcholine-gated cation channel activity","termid":"GO:1903048"}


id: PR:P36623
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoglycerate mutase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC26F1.06","secondary_identifiers":["UniProtKB:P36623"],"synonyms":[{"name":"BPG-dependent PGAM (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"MPGM (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"PGAM (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Phosphoglyceromutase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SPAC26F1.06","type":"related"},{"name":"Spom972h-gpmA","type":"exact"}],"termid":"PR:P36623"}


id: PBO:0039365
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adhesion molecule with Ig like domain 1","termid":"PBO:0039365"}


id: MOD:01502
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces the O4'-hydrogen atom of a tyrosine residue with the Applied Biosystems iTRAQ4plex-116 reporter+balance group.","definition_xrefs":["Unimod:214#Y","OMSSA:175"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-tyrosine residue","termid":"MOD:00919"},{"relation_name":"is_a","term_name":"iTRAQ4plex-116 reporter+balance reagent acylated residue","termid":"MOD:01499"},{"relation_name":"is_a","term_name":"iTRAQ4plex reporter+balance reagent O-acylated residue","termid":"MOD:01713"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iTRAQ4plex-116 reporter+balance reagent O4'-acylated tyrosine","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"Applied Biosystems iTRAQ(TM) multiplexed quantitation chemistry","type":"related"},{"name":"Representative mass and accurate mass for 116 & 117","type":"related"},{"name":"iTRAQ","type":"related"},{"name":"iTRAQ116Y","type":"exact"},{"name":"iTRAQ4plex","type":"related"}],"termid":"MOD:01502"}


id: PBO:0029640
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_TPCK","termid":"PBO:0029640"}


id: FYPO:0007879
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which protein degradation does not occur during a cellular response to methyl methanesulfonate. Protein degradation, also known as protein catabolism, is any metabolic process that results in the destruction of the native, active configuration of a protein, with or without the hydrolysis of peptide bonds.","definition_xrefs":["PMID:34608864","GO:0030163","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein degradation during vegetative growth","termid":"FYPO:0000845"},{"relation_name":"is_a","term_name":"abolished biological process","termid":"FYPO:0005448"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0002274"],"is_obsolete":false,"name":"abolished protein degradation during cellular response to methyl methanesulfonate","synonyms":[{"name":"abolished protein breakdown during cellular response to methyl methanesulfonate","type":"exact"},{"name":"abolished protein catabolic process during cellular response to methyl methanesulfonate","type":"exact"},{"name":"abolished protein catabolism during cellular response to methyl methanesulfonate","type":"exact"},{"name":"abolished protein degradation during cellular response to MMS","type":"exact"},{"name":"abolished protein degradation during cellular response to methyl methanesulfonate during mitotic cell cycle","type":"related"},{"name":"abolished protein degradation during cellular response to methyl methanesulfonate during vegetative growth","type":"exact"},{"name":"protein degradation during cellular response to methyl methanesulfonate abolished","type":"exact"}],"termid":"FYPO:0007879"}


id: FYPO:0006004
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cytoplasmic microtubule organization is normal (i.e. indistinguishable from wild type) during interphase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah","GO:0031122"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal microtubule cytoskeleton organization during vegetative growth","termid":"FYPO:0000899"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001312","FYPO:0000257"],"is_obsolete":false,"name":"normal interphase microtubule organization","synonyms":[{"name":"normal cytoplasmic microtubule organization during interphase during vegetative growth","type":"exact"},{"name":"normal cytoplasmic microtubule organization during interphase of mitotic cell cycle","type":"exact"},{"name":"normal cytoplasmic microtubule organization during mitotic interphase","type":"exact"},{"name":"normal interphase cytoplasmic microtubule organization","type":"exact"},{"name":"normal interphase microtubule organisation","type":"exact"}],"termid":"FYPO:0006004"}


id: SO:0000132
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A single stranded oligo used for polymerase chain reaction.","direct_ancestors":[{"relation_name":"has_quality","term_name":"reverse","termid":"SO:0001031"},{"relation_name":"is_a","term_name":"primer","termid":"SO:0000112"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"reverse_primer","synonyms":[{"name":"DNA reverse primer","type":"exact"},{"name":"reverse DNA primer","type":"exact"},{"name":"reverse primer","type":"exact"},{"name":"reverse primer oligo","type":"exact"},{"name":"reverse primer oligonucleotide","type":"exact"},{"name":"reverse primer sequence","type":"exact"}],"termid":"SO:0000132"}


id: GO:0019893
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete DNA replication inhibitor (obsolete GO:0019893)","synonyms":[{"name":"DNA replication inhibitor","type":"exact"}],"termid":"GO:0019893"}


id: PBO:0005570
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase Prp4","termid":"PBO:0005570"}


id: PBO:0074103
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 27 member 6","termid":"PBO:0074103"}


id: GO:0043409
data:
  {"annotated_genes":["SJAG_03185","SJAG_01114","SJAG_05000","SJAG_04522","SJAG_02392","SJAG_03263","SJAG_03893","SJAG_02000","SJAG_02233","SJAG_04825","SJAG_00975","SJAG_02013"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88526],"is_not":false,"summary":null,"term":"GO:0043409"},{"annotations":[107369,99761,118647,96173,107929,104119],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903138"},{"annotations":[118648,95361,117408,99763,96293,91986],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903753"},{"annotations":[107458],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0180040"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction mediated by the MAPKKK cascade.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of MAPK cascade","termid":"GO:0043408"},{"relation_name":"is_a","term_name":"negative regulation of intracellular signal transduction","termid":"GO:1902532"},{"relation_name":"negatively_regulates","term_name":"MAPK cascade","termid":"GO:0000165"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00975":null,"SJAG_01114":null,"SJAG_02000":null,"SJAG_02013":null,"SJAG_02233":null,"SJAG_02392":null,"SJAG_03185":null,"SJAG_03263":null,"SJAG_03893":null,"SJAG_04522":null,"SJAG_04825":null,"SJAG_05000":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of MAPK cascade","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of MAPK cascade","type":"exact"},{"name":"down regulation of MAPKKK cascade","type":"exact"},{"name":"down-regulation of MAPK cascade","type":"exact"},{"name":"down-regulation of MAPKKK cascade","type":"exact"},{"name":"downregulation of MAPK cascade","type":"exact"},{"name":"downregulation of MAPKKK cascade","type":"exact"},{"name":"inhibition of MAPK cascade","type":"narrow"},{"name":"inhibition of MAPKKK cascade","type":"narrow"},{"name":"negative regulation of MAP kinase cascade","type":"exact"},{"name":"negative regulation of MAP kinase kinase kinase cascade","type":"exact"},{"name":"negative regulation of MAPKKK cascade","type":"exact"},{"name":"negative regulation of mitogen activated protein kinase cascade","type":"exact"},{"name":"negative regulation of mitogen activated protein kinase kinase kinase cascade","type":"exact"},{"name":"negative regulation of mitogen-activated protein kinase cascade","type":"exact"},{"name":"negative regulation of mitogen-activated protein kinase kinase kinase cascade","type":"exact"}],"termid":"GO:0043409","terms_by_termid":{"GO:0043409":null,"GO:0180040":null,"GO:1903138":null,"GO:1903753":null}}


id: PBO:0047246
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 237 member B","termid":"PBO:0047246"}


id: PBO:0087194
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rpd3L histone deacetylase complex subunit; key transcriptional regulator of early meiotic genes; involved in chromatin remodeling and transcriptional repression via DNA looping; binds URS1 upstream regulatory sequence, represses transcription by recruiting conserved histone deacetylase Rpd3p (through co-repressor Sin3p) and chromatin-remodeling factor Isw2p; couples metabolic responses to nutritional cues with initiation and progression of meiosis","termid":"PBO:0087194"}


id: GO:0022869
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein N-phosphohistidine + lactose(out) = protein histidine + lactose phosphate(in). This differs from primary and secondary active transport in that the solute is modified during transport.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-N(PI)-phosphohistidine-sugar phosphotransferase activity","termid":"GO:0008982"},{"relation_name":"is_a","term_name":"lactose transmembrane transporter activity","termid":"GO:0015155"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity","synonyms":[{"name":"lactose PTS transporter activity","type":"exact"}],"termid":"GO:0022869"}


id: PBO:0087016
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribonucleotide-diphosphate reductase (RNR), small subunit; the RNR complex catalyzes the rate-limiting step in dNTP synthesis and is regulated by DNA replication and DNA damage checkpoint pathways via localization of the small subunits; RNR2 has a paralog, RNR4, that arose from the whole genome duplication","termid":"PBO:0087016"}


id: GO:0008692
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-3-hydroxybutanoyl-CoA = (R)-3-hydroxybutanoyl-CoA.","definition_xrefs":["EC:5.1.2.3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"racemase and epimerase activity, acting on hydroxy acids and derivatives","termid":"GO:0016856"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016853","GO:0003824"],"is_obsolete":false,"name":"3-hydroxybutyryl-CoA epimerase activity","secondary_identifiers":["MetaCyc:OHBUTYRYL-COA-EPIM-RXN","RHEA:21760"],"synonyms":[{"name":"3-hydroxyacyl-CoA epimerase activity","type":"related"},{"name":"3-hydroxybutanoyl-CoA 3-epimerase activity","type":"related"},{"name":"3-hydroxybutyryl coenzyme A epimerase activity","type":"related"}],"termid":"GO:0008692"}


id: FYPO:0006540
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which actin cytoskeleton organization is abnormal during a cellular response to pheromone.","definition_xrefs":["GO:0030036","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actin cytoskeleton organization","termid":"FYPO:0004803"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0004803","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal actin cytoskeleton organization during cellular response to pheromone","synonyms":[{"name":"abnormal actin cytoskeleton organisation during cellular response to pheromone","type":"exact"}],"termid":"FYPO:0006540"}


id: GO:1903041
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of chondrocyte hypertrophy.","definition_xrefs":["PMID:23928032","GOC:mr","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell growth","termid":"GO:0001558"},{"relation_name":"is_a","term_name":"regulation of developmental growth","termid":"GO:0048638"},{"relation_name":"is_a","term_name":"regulation of chondrocyte development","termid":"GO:0061181"},{"relation_name":"regulates","term_name":"chondrocyte hypertrophy","termid":"GO:0003415"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of chondrocyte hypertrophy","termid":"GO:1903041"}


id: GO:1990009
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any apoptotic process in a retinal cell.","definition_xrefs":["PMID:24664675","PMID:15558487","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"apoptotic process","termid":"GO:0006915"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"retinal cell apoptotic process","secondary_identifiers":["GO:0046674"],"synonyms":[{"name":"induction of retinal programmed cell death","type":"related"}],"termid":"GO:1990009"}


id: FYECO:0000377
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which 5-fluorouracil (5-FU) was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ 5-FU","synonyms":[{"name":"+ 5-fluorouracil","type":"exact"}],"termid":"FYECO:0000377"}


id: PBO:0000680
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcripts Altered in Meiosis","termid":"PBO:0000680"}


id: GO:0008868
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: galactitol-1-phosphate + NAD+ = D-tagatose 6-phosphate + NADH + H+.","definition_xrefs":["EC:1.1.1.251"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"galactitol-1-phosphate 5-dehydrogenase activity","secondary_identifiers":["MetaCyc:1.1.1.251-RXN","RHEA:15137"],"synonyms":[{"name":"galactitol-1-phosphate:NAD+ oxidoreductase activity","type":"related"}],"termid":"GO:0008868"}


id: PBO:0054343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1736","termid":"PBO:0054343"}


id: PBO:0029052
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_degradation","termid":"PBO:0029052"}


id: PBO:0004540
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CENP-B homolog","termid":"PBO:0004540"}


id: PBO:0000844
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulator of condensation (RCC1) domains","termid":"PBO:0000844"}


id: GO:1905314
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a semi-lunar valve over time, from its formation to the mature structure.","definition_xrefs":["GO_REF:0000094","GOC:rl","PMID:19409885","GOC:TermGenie","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heart valve development","termid":"GO:0003170"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"semi-lunar valve development","synonyms":[{"name":"semilunar valve development","type":"exact"},{"name":"semilunar valves development","type":"exact"}],"termid":"GO:1905314"}


id: GO:0000055
data:
  {"annotated_genes":["SJAG_01358","SJAG_03719","SJAG_00178","SJAG_03882","SJAG_01391","SJAG_01065","SJAG_00753","SJAG_04308"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[76499,76968,77258,80494,99962,106075,116556,118005],"is_not":false,"summary":null,"term":"GO:0000055"}]},"cv_name":"biological_process","definition":"The directed movement of a ribosomal large subunit from the nucleus into the cytoplasm.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribosomal subunit export from nucleus","termid":"GO:0000054"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00178":null,"SJAG_00753":null,"SJAG_01065":null,"SJAG_01358":null,"SJAG_01391":null,"SJAG_03719":null,"SJAG_03882":null,"SJAG_04308":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006913"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0042254"}],"interesting_parent_ids":["GO:0006810","GO:0042254","GO:0006913","GO:0008150","GO:0044085","GO:0051179"],"is_obsolete":false,"name":"ribosomal large subunit export from nucleus","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0000057"],"synonyms":[{"name":"50S ribosomal subunit export from nucleus","type":"narrow"},{"name":"60S ribosomal subunit export from nucleus","type":"narrow"},{"name":"ribosomal large subunit export from cell nucleus","type":"exact"},{"name":"ribosomal large subunit export out of nucleus","type":"exact"},{"name":"ribosomal large subunit transport from nucleus to cytoplasm","type":"exact"},{"name":"ribosomal large subunit-nucleus export","type":"exact"}],"termid":"GO:0000055","terms_by_termid":{"GO:0000055":null}}


id: PBO:0045958
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epidermal growth factor receptor","termid":"PBO:0045958"}


id: GO:0051649
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id: GO:1903580
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of ATP metabolic process.","definition_xrefs":["PMID:20695849","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of purine nucleotide metabolic process","termid":"GO:1900544"},{"relation_name":"is_a","term_name":"regulation of ATP metabolic process","termid":"GO:1903578"},{"relation_name":"positively_regulates","term_name":"ATP metabolic process","termid":"GO:0046034"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055086"},{"rel_name":"positively_regulates","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"positive regulation of ATP metabolic process","synonyms":[{"name":"activation of ATP metabolic process","type":"narrow"},{"name":"activation of ATP metabolism","type":"narrow"},{"name":"positive regulation of ATP metabolism","type":"exact"},{"name":"up regulation of ATP metabolic process","type":"exact"},{"name":"up regulation of ATP metabolism","type":"exact"},{"name":"up-regulation of ATP metabolic process","type":"exact"},{"name":"up-regulation of ATP metabolism","type":"exact"},{"name":"upregulation of ATP metabolic process","type":"exact"},{"name":"upregulation of ATP metabolism","type":"exact"}],"termid":"GO:1903580"}


id: PR:O94597
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC622.07 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94597"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized membrane protein C622.07 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC622.07","synonyms":[{"name":"Spom972h-SPCC622.07","type":"exact"}],"termid":"PR:O94597"}


id: PBO:0028641
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_level_during_meiosis","termid":"PBO:0028641"}


id: MOD:01617
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-threonine residue to O-(6-phosphomannosyl)-L-threonine.","definition_xrefs":["RESID:AA0514","PubMed:20044576"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-glycosyl-L-threonine","termid":"MOD:00005"},{"relation_name":"is_a","term_name":"mannosylated residue","termid":"MOD:00595"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"O-(6-phosphomannosyl)-L-threonine","synonyms":[{"name":"(2S,3R)-2-amino-3-[6-phosphonooxy-alpha-D-mannopyranosyloxy]butanoic acid","type":"exact"},{"name":"CARBOHYD O-linked (Man6P) threonine","type":"exact"},{"name":"O-(6-phosphomannosyl)-L-threonine","type":"exact"},{"name":"O3-(6-phosphomannosyl)threonine","type":"exact"}],"termid":"MOD:01617"}


id: GO:0070542
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fatty acid stimulus.","definition_xrefs":["GOC:lp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to lipid","termid":"GO:0033993"},{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to fatty acid","termid":"GO:0070542"}


id: GO:0031571
data:
  {"annotated_genes":["SJAG_02026","SJAG_00169"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91631,109994],"is_not":false,"summary":null,"term":"GO:0031571"}]},"cv_name":"biological_process","definition":"A signal transduction process that contributes to a mitotic cell cycle G1/S transition DNA damage checkpoint.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitotic DNA damage checkpoint signaling","termid":"GO:0044773"},{"relation_name":"is_a","term_name":"mitotic G1/S transition checkpoint signaling","termid":"GO:0044819"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00169":null,"SJAG_02026":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"negatively_regulates","termid":"GO:0044772"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0044772"}],"interesting_parent_ids":["GO:0008150","GO:0007049","GO:0044772","GO:0023052"],"is_obsolete":false,"name":"mitotic G1 DNA damage checkpoint signaling","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0044783","GO:0072431","GO:1902400"],"synonyms":[{"name":"G1 DNA damage checkpoint","type":"related"},{"name":"G1/S DNA damage checkpoint","type":"related"},{"name":"intracellular signal transduction involved in G1 DNA damage checkpoint","type":"exact"},{"name":"intracellular signal transduction involved in G1/S DNA damage checkpoint","type":"exact"},{"name":"intracellular signal transduction pathway involved in G1 DNA damage checkpoint","type":"exact"},{"name":"intracellular signal transduction pathway involved in G1/S DNA damage checkpoint","type":"exact"},{"name":"intracellular signaling cascade involved in G1 DNA damage checkpoint","type":"exact"},{"name":"intracellular signaling cascade involved in G1/S DNA damage checkpoint","type":"exact"},{"name":"intracellular signaling chain involved in G1 DNA damage checkpoint","type":"exact"},{"name":"intracellular signaling chain involved in G1/S DNA damage checkpoint","type":"exact"},{"name":"intracellular signaling pathway involved in G1 DNA damage checkpoint","type":"exact"},{"name":"intracellular signaling pathway involved in G1/S DNA damage checkpoint","type":"exact"},{"name":"mitotic G1 DNA damage checkpoint","type":"exact"},{"name":"mitotic cell cycle G1/S transition DNA damage checkpoint","type":"exact"},{"name":"signal transduction involved in mitotic G1 DNA damage checkpoint","type":"related"},{"name":"signal transduction involved in mitotic cell cycle G1/S transition DNA damage checkpoint","type":"related"},{"name":"signal transduction via intracellular signaling cascade involved in G1 DNA damage checkpoint","type":"exact"},{"name":"signal transduction via intracellular signaling cascade involved in G1/S DNA damage checkpoint","type":"exact"},{"name":"signal transmission via intracellular cascade involved in G1 DNA damage checkpoint","type":"exact"}],"termid":"GO:0031571","terms_by_termid":{"GO:0031571":null}}


id: PBO:0046194
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ELN antisense RNA 1","termid":"PBO:0046194"}


id: GO:0075028
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent symbiont appressorium initiation.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of appressorium initiation (obsolete GO:0075028)","synonyms":[{"name":"negative regulation of appressorium initiation on or near host","type":"related"},{"name":"negative regulation of initiation of appressorium on or near host","type":"exact"}],"termid":"GO:0075028"}


id: FYPO:0004783
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a histone methyltransferase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromatin organization","termid":"FYPO:0000642"},{"relation_name":"is_a","term_name":"abnormal protein methyltransferase activity","termid":"FYPO:0005723"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0001985","FYPO:0000002","FYPO:0000661","FYPO:0000641","FYPO:0000652","FYPO:0000654","FYPO:0005447"],"is_obsolete":false,"name":"abnormal histone methyltransferase activity","termid":"FYPO:0004783"}


id: PBO:0068874
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 114, pseudogene","termid":"PBO:0068874"}


id: GO:0019773
data:
  {"annotated_genes":["SJAG_04357","SJAG_00778","SJAG_05316","SJAG_02562","SJAG_00808","SJAG_04306","SJAG_02502"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[70144,72260,72860,73283,75481,75729,78697],"is_not":false,"summary":null,"term":"GO:0019773"}]},"cv_name":"cellular_component","definition":"The proteasome core subcomplex that constitutes the two outer rings of the proteasome core complex. An example of this component is found in Mus musculus.","definition_xrefs":["GOC:jl","GOC:mtg_sensu","GOC:rb","PMID:10854779"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"intracellular anatomical structure","termid":"GO:0005622"},{"relation_name":"part_of","term_name":"proteasome core complex","termid":"GO:0005839"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00778":null,"SJAG_00808":null,"SJAG_02502":null,"SJAG_02562":null,"SJAG_04306":null,"SJAG_04357":null,"SJAG_05316":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"proteasome core complex, alpha-subunit complex","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0019773","terms_by_termid":{"GO:0019773":null}}


id: MONDO:0012786
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Juvenile cataract - microcornea - renal glucosuria is an extremely rare autosomal dominant association reported in a single Swiss family and characterized clinically by juvenile cataract associated with bilateral microcornea, and renal glucosuria without other renal tubular defects.","definition_xrefs":["Orphanet:247794"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete nephropathy secondary to a storage or other metabolic disease (obsolete MONDO:0019743)","termid":"MONDO:0019743"},{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"disorder of carbohydrate transmembrane transport and absorption","termid":"MONDO:0017706"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0037792","MONDO:0000426"],"is_obsolete":false,"name":"juvenile cataract-microcornea-renal glucosuria syndrome","secondary_identifiers":["MEDGEN:934773","UMLS:C4310806","DOID:0070353","SCTID:722457005","OMIM:612018","MESH:C567434","GARD:17196"],"synonyms":[{"name":"CJMG","type":"related"},{"name":"CTRCT47","type":"related"},{"name":"cataract 47","type":"related"},{"name":"cataract 47, juvenile, with microcornea","type":"exact"},{"name":"cataract, juvenile, with microcornea","type":"related"},{"name":"cataract, juvenile, with microcornea and glucosuria","type":"related"},{"name":"cataract, juvenile, with microcornea and glucosuria, formerly","type":"related"},{"name":"juvenile cataract-microcornea-renal glucosuria syndrome","type":"exact"}],"termid":"MONDO:0012786","xrefs":{"Monarch":{"xref_id":"0012786"}}}


id: MONDO:0019521
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Centripetalis recessive dystrophic epidermolysis bullosa (RDEB-Ce) is an extremely rare subtype of dystrophic epidermolysis bullosa (DEB), characterized by blistering which begins acrally and then progressively spreads toward the trunk.","definition_xrefs":["Orphanet:89841"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epidermolysis bullosa dystrophica","termid":"MONDO:0006543"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"centripetalis recessive dystrophic epidermolysis bullosa","secondary_identifiers":["SCTID:725419003","UMLS:C4511056","MEDGEN:1377762"],"synonyms":[{"name":"RDEB, centripetalis","type":"exact"},{"name":"RDEB-Ce","type":"exact"},{"name":"centripetal dystrophic epidermolysis bullosa","type":"exact"},{"name":"centripetal recessive dystrophic epidermolysis bullosa","type":"exact"}],"termid":"MONDO:0019521","xrefs":{"Monarch":{"xref_id":"0019521"}}}


id: MONDO:0005694
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign or malignant neoplasm that affects the cecum. Representative examples of benign neoplasms include lipoma and leiomyoma. Representative examples of malignant neoplasms include carcinoma, lymphoma, and sarcoma. Cecal adenomas always exhibit epithelial dysplasia and are considered premalignant neoplasms.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cecal disorder","termid":"MONDO:0002031"},{"relation_name":"is_a","term_name":"colonic neoplasm","termid":"MONDO:0005401"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"cecal neoplasm","secondary_identifiers":["EFO:0009255","NCIT:C4433","SCTID:126839008","MESH:D002430","UMLS:C0007528","MEDGEN:2922","DOID:1517"],"synonyms":[{"name":"caecum neoplasm","type":"exact"},{"name":"caecum neoplasm (disease)","type":"exact"},{"name":"caecum tumor","type":"exact"},{"name":"caecum tumour","type":"exact"},{"name":"cecal benign neoplasm","type":"related"},{"name":"cecum neoplasm","type":"exact"},{"name":"cecum tumor","type":"exact"},{"name":"cecum tumour","type":"exact"},{"name":"neoplasm of caecum","type":"exact"},{"name":"neoplasm of cecum","type":"exact"},{"name":"neoplasm of the cecum","type":"exact"},{"name":"tumor of caecum","type":"exact"},{"name":"tumor of cecum","type":"exact"},{"name":"tumor of the cecum","type":"exact"},{"name":"tumour of caecum","type":"exact"},{"name":"tumour of cecum","type":"exact"},{"name":"tumour of the cecum","type":"exact"}],"termid":"MONDO:0005694","xrefs":{"Monarch":{"xref_id":"0005694"}}}


id: FYPO:0006097
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to actin cables is increased.","definition_xrefs":["PMID:20705471","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to actin cable","termid":"FYPO:0006096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"increased protein localization to actin cable","synonyms":[{"name":"increased protein localisation to actin cable during vegetative growth","type":"exact"},{"name":"increased protein localization to actin cable during mitotic cell cycle","type":"related"},{"name":"increased protein localization to actin cable during vegetative growth","type":"exact"},{"name":"increased protein localization to formin-nucleated actin cable","type":"exact"}],"termid":"FYPO:0006097"}


id: GO:0102400
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2 S-adenosyl-L-methionine + dTDP-3-amino-4-dehydro-2,3,6-trideoxy-alpha-D-glucose = 2 S-adenosyl-L-homocysteine + dTDP-3-N,N-dimethylamino-4-oxo-2,3,6-trideoxy-alpha-D-glucose + 2 H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete dTDP-3-amino-4-oxo-2,3,6-trideoxy-alpha-D-glucose N,N-dimethyltransferase activity (obsolete GO:0102400)","termid":"GO:0102400"}


id: PBO:0044906
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DET1 partner of COP1 E3 ubiquitin ligase","termid":"PBO:0044906"}


id: MONDO:0005111
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An infection that is caused by Epstein-Barr virus.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary viral infectious disease","termid":"MONDO:0100329"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Epstein-Barr virus infection","secondary_identifiers":["EFO:0000769","UMLS:C0149678","DOID:2938","MESH:D020031","MEDGEN:57439","NCIT:C38759"],"synonyms":[{"name":"EBV infection","type":"exact"},{"name":"EBV infections","type":"related"},{"name":"Epstein Barr Virus infections","type":"related"},{"name":"Epstein-Barr Virus infection","type":"exact"},{"name":"Herpesvirus 4 infections, Human","type":"related"},{"name":"Human Herpes Virus 4 infections","type":"related"},{"name":"Human Herpesvirus 4 infections","type":"related"},{"name":"Human gammaherpesvirus 4 caused disease or disorder","type":"exact"},{"name":"Human gammaherpesvirus 4 disease or disorder","type":"exact"},{"name":"Human gammaherpesvirus 4 infectious disease","type":"exact"},{"name":"Virus infections, Epstein-Barr","type":"related"},{"name":"infections, EBV","type":"related"},{"name":"infections, Epstein-Barr Virus","type":"related"}],"termid":"MONDO:0005111","xrefs":{"Monarch":{"xref_id":"0005111"}}}


id: MONDO:0035405
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"serous or mucinous cystadenoma of childhood","termid":"MONDO:0016092"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"seromucinous cystadenoma of childhood","secondary_identifiers":["UMLS:C5231009","ICD10CM:D27","MEDGEN:1702847","GARD:22258","Orphanet:563676"],"synonyms":[{"name":"Seromucinous cystadenoma of ovary in childhood","type":"exact"}],"termid":"MONDO:0035405","xrefs":{"Monarch":{"xref_id":"0035405"}}}


id: FYPO:0001919
data:
  {"alleles_by_uniquename":{"SJAG_04464:allele-1":{"allele_type":"amino_acid_mutation","description":"R152C","gene_uniquename":"SJAG_04464","name":"pim1-R152C","synonyms":[{"name":"Inferred CDK-phospho-mimic mutation","reference":"PMID:28954740","type":"exact"}],"uniquename":"SJAG_04464:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[119831],"is_not":false,"rel_names":["has_part","is_a"],"summary":null,"term":"FYPO:0003976"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the nucleus is broken into multiple small fragments that are smaller than a normal nucleus.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nuclear morphology during vegetative growth","termid":"FYPO:0000062"},{"relation_name":"is_a","term_name":"fragmented nucleus","termid":"FYPO:0006661"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04464":null},"genotype_count":1,"genotypes_by_uniquename":{"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"pim1-R152C(aa)","display_uniquename":"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002403"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0002403","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"fragmented nucleus during vegetative growth","references_by_uniquename":{"PMID:28954740":null},"single_locus_annotated_genes":["SJAG_04464"],"single_locus_genotype_uniquenames":["pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"fragmented nuclear DNA during vegetative growth","type":"related"},{"name":"fragmented nucleus during mitotic cell cycle","type":"related"},{"name":"loss of nuclear integrity during vegetative growth","type":"related"}],"termid":"FYPO:0001919","terms_by_termid":{"FYECO:0000004":null,"FYPO:0003976":null}}


id: PBO:0073831
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 7 member 7","termid":"PBO:0073831"}


id: GO:0021801
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The radial migration of neuronal or glial precursor cells along radial glial cells during the development of the cerebral cortex.","definition_xrefs":["GO_REF:0000021","GOC:dph","GOC:dgh","GOC:jid","PMID:12626695","GOC:cls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cerebral cortex radially oriented cell migration","termid":"GO:0021799"},{"relation_name":"is_a","term_name":"telencephalon glial cell migration","termid":"GO:0022030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cerebral cortex radial glia-guided migration","synonyms":[{"name":"cerebral cortex radial glia guided migration","type":"exact"},{"name":"cerebral cortex radial glia-dependent cell migration","type":"exact"},{"name":"glial-guided locomotion","type":"related"}],"termid":"GO:0021801"}


id: PBO:0073693
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SIX homeobox 5","termid":"PBO:0073693"}


id: PBO:0083281
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; not conserved in closely related Saccharomyces species; partially overlaps the verified essential gene ABF1","termid":"PBO:0083281"}


id: MONDO:0006469
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An adamantinoma arising from the tibia. The tibia is the site which is more frequently involved by adamantinoma (80-90% of cases).","definition_xrefs":["NCIT:C8461"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cancer of long bone of lower limb","termid":"MONDO:0000952"},{"relation_name":"is_a","term_name":"adamantinoma","termid":"MONDO:0002422"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"tibial adamantinoma","secondary_identifiers":["UMLS:C1273017","MEDGEN:220874","DOID:6322","SCTID:281702006"],"synonyms":[{"name":"adamantinoma of tibia","type":"exact"},{"name":"tibia adamantinoma","type":"exact"},{"name":"tibia long bone adamantinoma","type":"exact"},{"name":"tibial adamantinoma","type":"exact"},{"name":"tibial adamantinoma morphology","type":"exact"}],"termid":"MONDO:0006469","xrefs":{"Monarch":{"xref_id":"0006469"}}}


id: GO:0003674
data:
  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