# terms

id: PATO:0000317
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A color that lacks any hues as parts.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"color","termid":"PATO:0000014"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"black","termid":"PATO:0000317"}


id: PBO:0042000
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 51","termid":"PBO:0042000"}


id: PBO:0045652
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"double homeobox A pseudogene 10","termid":"PBO:0045652"}


id: MONDO:0007052
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"growth hormone-producing pituitary gland adenoma","termid":"MONDO:0006238"},{"relation_name":"is_a","term_name":"familial isolated pituitary adenoma","termid":"MONDO:0017824"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"growth hormone secreting pituitary adenoma 1","secondary_identifiers":["DOID:0112009","OMIM:102200","UMLS:C4538355","MEDGEN:1618709"],"synonyms":[{"name":"PAGH1","type":"related"},{"name":"PITA1","type":"related"},{"name":"Somatotrophinoma, familial","type":"related"},{"name":"acromegaly due to pituitary adenoma 1","type":"related"},{"name":"familial isolated pituitary adenoma syndrome","type":"related"},{"name":"isolated familial somatotropinoma","type":"related"},{"name":"pituitary adenoma 1, multiple types","type":"related"},{"name":"pituitary adenoma 1, multiple types, autosomal dominant, somatic mutation","type":"exact"},{"name":"pituitary adenoma predisposition","type":"related"},{"name":"pituitary adenoma predisposition, autosomal dominant, somatic mutation","type":"exact"},{"name":"pituitary adenoma, familial isolated","type":"related"},{"name":"pituitary adenoma, growth hormone-secreting, 1","type":"related"},{"name":"pituitary adenoma, growth hormone-secreting, type 1","type":"exact"},{"name":"somatotropinoma, familial isolated","type":"related"}],"termid":"MONDO:0007052","xrefs":{"Monarch":{"xref_id":"0007052"}}}


id: GO:0071762
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex composed of two identical immunoglobulin heavy chains of the IgNAR isotype held together by disulfide bonds and lacking immunoglobulin light chains.","definition_xrefs":["ISBN:0781765196","PMID:12543123","PMID:16051357","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immunoglobulin complex","termid":"GO:0019814"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"heavy chain immunoglobulin complex","synonyms":[{"name":"HCab","type":"narrow"},{"name":"Ig NAR immunoglobulin complex","type":"narrow"},{"name":"IgNAR antibody","type":"narrow"},{"name":"IgNAR immunoglobulin complex","type":"narrow"}],"termid":"GO:0071762"}


id: PBO:0058583
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6716","termid":"PBO:0058583"}


id: PBO:0116297
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nucleosome spacing factor; subunit of INO80 chromatin remodeling complex; involved in positioning and spacing of nucleosomes over most genes independently of transcription; promotes nucleosome shifts in the 3' direction; has a role in modulating stress gene transcription","termid":"PBO:0116297"}


id: MONDO:0011161
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sperm-specific antigen 1","secondary_identifiers":["OMIM:601876","MEDGEN:244171","UMLS:C1420425"],"synonyms":[{"name":"SSFA1","type":"related"},{"name":"fertilisation antigen 1","type":"related"},{"name":"fertilization antigen 1","type":"related"},{"name":"sperm-specific antigen 1","type":"exact"},{"name":"sperm-specific antigen type 1","type":"exact"}],"termid":"MONDO:0011161","xrefs":{"Monarch":{"xref_id":"0011161"}}}


id: PBO:0029857
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-viable_spheroid_vegetative_cell","termid":"PBO:0029857"}


id: MONDO:0018237
data:
  {"annotated_genes":["SJAG_00414","SJAG_00504","SJAG_00197","SJAG_03144"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85449],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014651"},{"annotations":[86300],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012516"},{"annotations":[85506],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007943"},{"annotations":[85729],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009903"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"dysostosis","termid":"MONDO:0018234"},{"relation_name":"is_a","term_name":"congenital limb malformation","termid":"MONDO:0019054"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00197":null,"SJAG_00414":null,"SJAG_00504":null,"SJAG_03144":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"acrofacial dysostosis","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:21574","Orphanet:364574","DOID:0060379","icd11.foundation:1702160042","MEDGEN:272278","NCIT:C35795","UMLS:C1332140"],"termid":"MONDO:0018237","terms_by_termid":{"MONDO:0007943":null,"MONDO:0009903":null,"MONDO:0012516":null,"MONDO:0014651":null},"xrefs":{"Monarch":{"xref_id":"0018237"}}}


id: PBO:0031551
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_peptidase_activity","termid":"PBO:0031551"}


id: PBO:0027391
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_glutathione_disulfide_oxidoreductase_activity","termid":"PBO:0027391"}


id: PBO:0070971
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L18 pseudogene 9","termid":"PBO:0070971"}


id: PBO:0084098
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Guanine nucleotide exchange factor (GEF) that modulates Rho1p activity; involved in the cell integrity signaling pathway; interacts with Rgl1p; localization of Tus1p to the bed neck is regulated by Rgl1p; multicopy suppressor of tor2 mutation and ypk1 ypk2 double mutation; potential Cdc28p substrate","termid":"PBO:0084098"}


id: PBO:0043643
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COP9 signalosome subunit 5","termid":"PBO:0043643"}


id: MONDO:0004492
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inflammatory process affecting the mediastinum.","definition_xrefs":["NCIT:C26827"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"connective tissue disorder","termid":"MONDO:0003900"},{"relation_name":"is_a","term_name":"inflammatory disease","termid":"MONDO:0021166"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediastinitis","secondary_identifiers":["DOID:819","SCTID:47597000","icd11.foundation:1612791605","ICD10CM:J98.51","UMLS:C0025064","ICD9:519.2","MEDGEN:9921","MESH:D008480"],"termid":"MONDO:0004492","xrefs":{"Monarch":{"xref_id":"0004492"}}}


id: PBO:0050335
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 37","termid":"PBO:0050335"}


id: PBO:0084525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Member of the conserved GPN-loop GTPase family; has a role in transport of RNA polymerase II to the nucleus; exhibits GTP-dependent binding to PolII; has ATPase activity; involved in sister chromatid cohesion; phosphorylated by the Pcl1p-Pho85p kinase complex; human homolog XAB1 interacts with human RNA polymerase II; protein abundance increases in response to DNA replication stress","termid":"PBO:0084525"}


id: PBO:0086143
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein required for normal ER membrane biosynthesis in response to ER stress; ortholog of the FIT family of proteins involved in triglyceride droplet biosynthesis; human homolog FIT2/FITM2, a fatty acyl-CoA diphosphatase, complements the yeast null mutant; disputed role in the synthesis of inositol phospholipids from inositol; required for inositol prototrophy","termid":"PBO:0086143"}


id: PBO:0088079
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ubiquitin (Ub) chain assembly factor (E4); forms branched Ub chains on substrates destined for degradation, catalyzing K48-linked multi-monoubiquitination of K29-linked Ub chains assembled by the Ub-ligase Ufd4p; involved in the Ub-fusion degradation pathway, OLE membrane fluidity pathway, stress response survival and the ERAD pathway for misfolded proteins, where it promotes ubiquitination and transfer of ERAD substrates to Rad23p; U-box family member; homologous to human Ufd2a and Ufd2b","termid":"PBO:0088079"}


id: GO:0035013
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with the peptide myosuppressin to initiate a change in cell activity.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled peptide receptor activity","termid":"GO:0008528"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"myosuppressin receptor activity","termid":"GO:0035013"}


id: PBO:0068164
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 471","termid":"PBO:0068164"}


id: PBO:0026973
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_mitochondrial_RNA_level","termid":"PBO:0026973"}


id: MONDO:0022020
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Familial syndrome combining short stature, microcephaly, mental deficiency, seizures, hearing loss, and skin lesions","definition_xrefs":["GARD:0000945"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"excluded_subClassOf","term_name":"intellectual disability","termid":"MONDO:0001071"},{"relation_name":"is_a","term_name":"skin disorder","termid":"MONDO:0005093"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"Boudhina Yedes Khiari syndrome","secondary_identifiers":["UMLS:C2931668","MESH:C537939","MEDGEN:419467"],"termid":"MONDO:0022020","xrefs":{"Monarch":{"xref_id":"0022020"}}}


id: MONDO:0011904
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any benign familial infantile epilepsy in which the cause of the disease is a mutation in the SCN2A gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"benign familial infantile epilepsy","termid":"MONDO:0017615"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"seizures, benign familial infantile, 3","secondary_identifiers":["Orphanet:140927","DOID:0081116","GARD:16521","MedDRA:10067866","UMLS:C1843140","MEDGEN:375105","OMIM:607745"],"synonyms":[{"name":"BFIS3","type":"related"},{"name":"BFNIS","type":"exact"},{"name":"SCN2A benign familial infantile epilepsy","type":"exact"},{"name":"benign familial infantile convulsions","type":"related"},{"name":"benign familial infantile epilepsy caused by mutation in SCN2A","type":"exact"},{"name":"benign familial neonatal-infantile seizures","type":"exact"},{"name":"benign neonatal-infantile epilepsy","type":"exact"},{"name":"convulsions benign familial neonatal","type":"related"},{"name":"convulsions, benign familial infantile, 3","type":"related"},{"name":"epilepsy, benign neonatal-infantile","type":"related"},{"name":"seizures, benign familial infantile, 3","type":"exact"},{"name":"seizures, benign familial infantile, type 3","type":"exact"},{"name":"seizures, benign familial neonatal-infantile","type":"related"}],"termid":"MONDO:0011904","xrefs":{"Monarch":{"xref_id":"0011904"}}}


id: MONDO:0032940
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"retinitis pigmentosa","termid":"MONDO:0019200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004736"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0004736","MONDO:0005066"],"is_obsolete":false,"name":"retinitis pigmentosa 88","secondary_identifiers":["OMIM:618826","DOID:0112145","UMLS:C5394208","GARD:16385","MEDGEN:1720448"],"synonyms":[{"name":"RETINITIS PIGMENTOSA 88","type":"related"},{"name":"RP88","type":"related"}],"termid":"MONDO:0032940","xrefs":{"Monarch":{"xref_id":"0032940"}}}


id: PBO:0030587
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cellular_valine_level","termid":"PBO:0030587"}


id: PBO:0058713
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6841","termid":"PBO:0058713"}


id: GO:0018489
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H+ + NADH + O2 + vanillate = 3,4-dihydroxybenzoate + formaldehyde + H2O + NAD+.","definition_xrefs":["RHEA:13021","EC:1.14.13.82"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"},{"relation_name":"is_a","term_name":"demethylase activity","termid":"GO:0032451"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"vanillate monooxygenase activity","secondary_identifiers":["MetaCyc:RXN-10891","UM-BBD_reactionID:r0146","KEGG_REACTION:R05274"],"synonyms":[{"name":"4-hydroxy-3-methoxybenzoate demethylase activity","type":"related"},{"name":"vanillate demethylase (aerobic) activity","type":"exact"},{"name":"vanillate demethylase activity","type":"exact"},{"name":"vanillate:oxygen oxidoreductase (demethylating)","type":"related"}],"termid":"GO:0018489"}


id: MONDO:0012498
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any congenital stationary night blindness in which the cause of the disease is a mutation in the RHO gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital nervous system disorder","termid":"MONDO:0002320"},{"relation_name":"is_a","term_name":"congenital stationary night blindness","termid":"MONDO:0016293"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0002320","MONDO:0005328"],"is_obsolete":false,"name":"congenital stationary night blindness autosomal dominant 1","secondary_identifiers":["MESH:C566474","OMIM:610445","UMLS:C1864869","DOID:0110862","GARD:15488","MEDGEN:355852"],"synonyms":[{"name":"CSNBAD1","type":"exact"},{"name":"RHO congenital stationary night blindness","type":"exact"},{"name":"congenital stationary night blindness autosomal dominant type 1","type":"exact"},{"name":"congenital stationary night blindness caused by mutation in RHO","type":"exact"},{"name":"night blindness, congenital stationary, autosomal dominant 1","type":"related"},{"name":"night blindness, congenital stationary, autosomal dominant type 1","type":"exact"},{"name":"night blindness, congenital stationary, rhodopsin-related","type":"related"},{"name":"rhodopsin-related congenital stationary night blindness","type":"exact"}],"termid":"MONDO:0012498","xrefs":{"Monarch":{"xref_id":"0012498"}}}


id: PBO:0035738
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_methylation_during_vegetative_growth","termid":"PBO:0035738"}


id: PR:G2TRN0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC4H3.16 gene.","definition_xrefs":["UniProtKB:G2TRN0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C4H3.16 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4H3.16","synonyms":[{"name":"Spom972h-SPAC4H3.16","type":"exact"}],"termid":"PR:G2TRN0"}


id: GO:0010021
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of amylopectin, the (1->4) linked alpha glucose units with alpha-(1->6) linkages.","definition_xrefs":["ISBN:0943088399"],"direct_ancestors":[{"relation_name":"is_a","term_name":"macromolecule biosynthetic process","termid":"GO:0009059"},{"relation_name":"is_a","term_name":"carbohydrate derivative biosynthetic process","termid":"GO:1901137"},{"relation_name":"is_a","term_name":"amylopectin metabolic process","termid":"GO:2000896"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"amylopectin biosynthetic process","synonyms":[{"name":"amylopectin anabolism","type":"exact"},{"name":"amylopectin biosynthesis","type":"exact"},{"name":"amylopectin formation","type":"exact"},{"name":"amylopectin synthesis","type":"exact"}],"termid":"GO:0010021"}


id: PBO:0043397
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"c-Maf inducing protein","termid":"PBO:0043397"}


id: PBO:0073499
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SGSM3 antisense RNA 1","termid":"PBO:0073499"}


id: PBO:0069160
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 412, pseudogene","termid":"PBO:0069160"}


id: GO:0018983
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving Z-phenylacetaldoxime, a member of the glucosinolate group of compounds, a class of natural products that are gaining increasing interest as cancer-preventing agents and crop protectants.","definition_xrefs":["UM-BBD_pathwayID:pao"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldoxime metabolic process","termid":"GO:0019330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Z-phenylacetaldoxime metabolic process","synonyms":[{"name":"Z-phenylacetaldoxime metabolism","type":"exact"}],"termid":"GO:0018983"}


id: PBO:0090642
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rRNA processing protein Rrp15","termid":"PBO:0090642"}


id: GO:0048883
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The migration of a cluster of a relatively undifferentiated cell originating at specific cephalic placodes and depositing proneuromasts along a developing lateral line, from which the neuromasts will develop.","definition_xrefs":["PMID:15832385","PMID:15018940"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell migration","termid":"GO:0016477"},{"relation_name":"part_of","term_name":"lateral line development","termid":"GO:0048882"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neuromast primordium migration","synonyms":[{"name":"lateral line primordium migration","type":"exact"}],"termid":"GO:0048883"}


id: GO:0048687
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates, maintains or increases the rate of sprouting of an injured axon.","definition_xrefs":["GOC:lm","GOC:dgh","GOC:jid","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell growth","termid":"GO:0030307"},{"relation_name":"is_a","term_name":"positive regulation of developmental growth","termid":"GO:0048639"},{"relation_name":"is_a","term_name":"positive regulation of axon regeneration","termid":"GO:0048680"},{"relation_name":"is_a","term_name":"regulation of sprouting of injured axon","termid":"GO:0048686"},{"relation_name":"positively_regulates","term_name":"sprouting of injured axon","termid":"GO:0048682"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of sprouting of injured axon","synonyms":[{"name":"activation of sprouting of injured axon","type":"narrow"},{"name":"stimulation of sprouting of injured axon","type":"narrow"},{"name":"up regulation of sprouting of injured axon","type":"exact"},{"name":"up-regulation of sprouting of injured axon","type":"exact"},{"name":"upregulation of sprouting of injured axon","type":"exact"}],"termid":"GO:0048687"}


id: MONDO:0004262
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A multifocal neoplastic process characterized by the proliferation of spindle to cuboidal myoepithelial cells within and/or around small breast ducts.","definition_xrefs":["NCIT:C40385"],"direct_ancestors":[{"relation_name":"is_a","term_name":"breast myoepithelial tumor","termid":"MONDO:0002483"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"breast myoepitheliosis","secondary_identifiers":["MEDGEN:269362","UMLS:C1513799","DOID:7521"],"synonyms":[{"name":"breast myoepitheliosis","type":"exact"}],"termid":"MONDO:0004262","xrefs":{"Monarch":{"xref_id":"0004262"}}}


id: PBO:0051867
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interferon stimulated exonuclease gene 20 like 2","termid":"PBO:0051867"}


id: PBO:0065243
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRR15 divergent transcript","termid":"PBO:0065243"}


id: GO:0052503
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of the symbiont calcium-dependent protein kinase pathway during the symbiont defense response. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation by organism of defense-related symbiont calcium-dependent protein kinase pathway (obsolete GO:0052503)","synonyms":[{"name":"positive regulation by organism of defense-related symbiont calcium-dependent protein kinase pathway","type":"exact"},{"name":"positive regulation of defense-related symbiont CDPK pathway by organism","type":"exact"}],"termid":"GO:0052503"}


id: PBO:0031644
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_duration_of_septation","termid":"PBO:0031644"}


id: PBO:0047317
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FAT atypical cadherin 1 pseudogene 1","termid":"PBO:0047317"}


id: PBO:0024816
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-capable_of","termid":"PBO:0024816"}


id: PBO:0056806
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major facilitator superfamily domain containing 3","termid":"PBO:0056806"}


id: PBO:0036100
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_biotinylation_during_vegetative_growth","termid":"PBO:0036100"}


id: MONDO:0005358
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A serious condition caused by Dengue virus infection. Patients present with an acute febrile illness followed by restlessness, irritability, and bleeding. It may lead to hemorrhagic shock and death.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dengue disease","termid":"MONDO:0005502"},{"relation_name":"is_a","term_name":"viral hemorrhagic fever","termid":"MONDO:0018087"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dengue hemorrhagic fever","secondary_identifiers":["NCIT:C34683","SCTID:20927009","UMLS:C0019100","EFO:0004227","ICD10CM:A91","DOID:12206","MEDGEN:5506"],"synonyms":[{"name":"DHF","type":"exact"},{"name":"Dengue haemorrhagic fever","type":"related"}],"termid":"MONDO:0005358","xrefs":{"Monarch":{"xref_id":"0005358"}}}


id: PBO:0011126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"striatin homolog Far8 (predicted)","termid":"PBO:0011126"}


id: PBO:0057197
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 370","termid":"PBO:0057197"}


id: FYPO:0005156
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype characterized by altered ascus morphology, i.e. the size, shape, or structure of the ascus is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal phenotype","termid":"FYPO:0001985"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985"],"is_obsolete":false,"name":"abnormal ascus morphology","termid":"FYPO:0005156"}


id: GO:0070059
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals in which an intracellular signal is conveyed to trigger the apoptotic death of a cell. The pathway is induced in response to a stimulus indicating endoplasmic reticulum (ER) stress, and ends when the execution phase of apoptosis is triggered. ER stress usually results from the accumulation of unfolded or misfolded proteins in the ER lumen.","definition_xrefs":["GOC:mah","GOC:mtg_apoptosis","PMID:18701708"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to endoplasmic reticulum stress","termid":"GO:0034976"},{"relation_name":"is_a","term_name":"intrinsic apoptotic signaling pathway","termid":"GO:0097193"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress","synonyms":[{"name":"ER stress-induced apoptosis","type":"exact"},{"name":"apoptosis in response to ER stress","type":"exact"},{"name":"apoptosis in response to endoplasmic reticulum stress","type":"broad"},{"name":"apoptosis triggered by ER stress","type":"exact"},{"name":"endoplasmic reticulum stress-induced apoptosis","type":"exact"},{"name":"intrinsic apoptotic signaling pathway induced by endoplasmic reticulum stress","type":"exact"}],"termid":"GO:0070059"}


id: PBO:0069763
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1046, pseudogene","termid":"PBO:0069763"}


id: PR:Q9USZ1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An elongation factor G, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02754","PANTHER:PTHR23115:SF13","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongation factor G, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1306.01c","secondary_identifiers":["UniProtKB:Q9USZ1"],"synonyms":[{"name":"EF-Gmt (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-GFM1","type":"exact"},{"name":"elongation factor G 1, mitochondrial (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"elongation factor G1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"mEF-G 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9USZ1"}


id: PBO:0060774
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit B8","termid":"PBO:0060774"}


id: GO:0047868
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (2R,3S)-2,3-dimethylmalate = dimethylmaleate + H2O.","definition_xrefs":["EC:4.2.1.85","RHEA:20253"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016829","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"dimethylmaleate hydratase activity","secondary_identifiers":["KEGG_REACTION:R03069","MetaCyc:DIMETHYLMALEATE-HYDRATASE-RXN"],"synonyms":[{"name":"(2R,3S)-2,3-dimethylmalate hydro-lyase (dimethylmaleate-forming)","type":"related"},{"name":"(2R,3S)-2,3-dimethylmalate hydro-lyase activity","type":"related"}],"termid":"GO:0047868"}


id: GO:1905400
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of activated CD4-positive, alpha-beta T cell apoptotic process.","definition_xrefs":["PMID:24187568","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of T cell apoptotic process","termid":"GO:0070233"},{"relation_name":"is_a","term_name":"regulation of activated CD4-positive, alpha-beta T cell apoptotic process","termid":"GO:1905399"},{"relation_name":"negatively_regulates","term_name":"activated CD4-positive, alpha-beta T cell apoptotic process","termid":"GO:1905398"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of activated CD4-positive, alpha-beta T cell apoptotic process","synonyms":[{"name":"down regulation of activated CD4-positive, alpha-beta T cell apoptosis","type":"narrow"},{"name":"down regulation of activated CD4-positive, alpha-beta T cell apoptotic process","type":"exact"},{"name":"down regulation of activated CD4-positive, alpha-beta T lymphocyte apoptosis","type":"narrow"},{"name":"down regulation of activated CD4-positive, alpha-beta T lymphocyte apoptotic process","type":"exact"},{"name":"down regulation of activated CD4-positive, alpha-beta T-cell apoptosis","type":"narrow"},{"name":"down regulation of activated CD4-positive, alpha-beta T-cell apoptotic process","type":"exact"},{"name":"down regulation of activated CD4-positive, alpha-beta T-lymphocyte apoptosis","type":"narrow"},{"name":"down regulation of activated CD4-positive, alpha-beta T-lymphocyte apoptotic process","type":"exact"},{"name":"down-regulation of activated CD4-positive, alpha-beta T cell apoptosis","type":"narrow"},{"name":"down-regulation of activated CD4-positive, alpha-beta T cell apoptotic process","type":"exact"},{"name":"down-regulation of activated CD4-positive, alpha-beta T lymphocyte apoptosis","type":"narrow"},{"name":"down-regulation of activated CD4-positive, alpha-beta T lymphocyte apoptotic process","type":"exact"},{"name":"down-regulation of activated CD4-positive, alpha-beta T-cell apoptosis","type":"narrow"},{"name":"down-regulation of activated CD4-positive, alpha-beta T-cell apoptotic process","type":"exact"},{"name":"down-regulation of activated CD4-positive, alpha-beta T-lymphocyte apoptosis","type":"narrow"},{"name":"down-regulation of activated CD4-positive, alpha-beta T-lymphocyte apoptotic process","type":"exact"},{"name":"downregulation of activated CD4-positive, alpha-beta T cell apoptosis","type":"narrow"},{"name":"downregulation of activated CD4-positive, alpha-beta T cell apoptotic process","type":"exact"},{"name":"downregulation of activated CD4-positive, alpha-beta T lymphocyte apoptosis","type":"narrow"},{"name":"downregulation of activated CD4-positive, alpha-beta T lymphocyte apoptotic process","type":"exact"},{"name":"downregulation of activated CD4-positive, alpha-beta T-cell apoptosis","type":"narrow"},{"name":"downregulation of activated CD4-positive, alpha-beta T-cell apoptotic process","type":"exact"},{"name":"downregulation of activated CD4-positive, alpha-beta T-lymphocyte apoptosis","type":"narrow"},{"name":"downregulation of activated CD4-positive, alpha-beta T-lymphocyte apoptotic process","type":"exact"},{"name":"inhibition of activated CD4-positive, alpha-beta T cell apoptosis","type":"narrow"},{"name":"inhibition of activated CD4-positive, alpha-beta T cell apoptotic process","type":"narrow"},{"name":"inhibition of activated CD4-positive, alpha-beta T lymphocyte apoptosis","type":"narrow"},{"name":"inhibition of activated CD4-positive, alpha-beta T lymphocyte apoptotic process","type":"narrow"},{"name":"inhibition of activated CD4-positive, alpha-beta T-cell apoptosis","type":"narrow"},{"name":"inhibition of activated CD4-positive, alpha-beta T-cell apoptotic process","type":"narrow"},{"name":"inhibition of activated CD4-positive, alpha-beta T-lymphocyte apoptosis","type":"narrow"},{"name":"inhibition of activated CD4-positive, alpha-beta T-lymphocyte apoptotic process","type":"narrow"},{"name":"negative regulation of activated CD4-positive, alpha-beta T cell apoptosis","type":"narrow"},{"name":"negative regulation of activated CD4-positive, alpha-beta T lymphocyte apoptosis","type":"narrow"},{"name":"negative regulation of activated CD4-positive, alpha-beta T lymphocyte apoptotic process","type":"exact"},{"name":"negative regulation of activated CD4-positive, alpha-beta T-cell apoptosis","type":"narrow"},{"name":"negative regulation of activated CD4-positive, alpha-beta T-cell apoptotic process","type":"exact"},{"name":"negative regulation of activated CD4-positive, alpha-beta T-lymphocyte apoptosis","type":"narrow"},{"name":"negative regulation of activated CD4-positive, alpha-beta T-lymphocyte apoptotic process","type":"exact"}],"termid":"GO:1905400"}


id: PBO:0034305
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-is_downstream_of_sequence_of","termid":"PBO:0034305"}


id: PBO:0067850
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 152","termid":"PBO:0067850"}


id: PBO:0078916
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Gln (anticodon TTG) 5-1","termid":"PBO:0078916"}


id: FYPO:0006084
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which cells show increased sensitivity to cold shock. Cold shock is a form of temperature stress in which cells are briefly exposed to a very low temperature.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cell population growth at low temperature","termid":"FYPO:0000080"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000139","FYPO:0001985","FYPO:0002057","FYPO:0002060","FYPO:0000003","FYPO:0002058"],"is_obsolete":false,"name":"sensitive to cold shock","synonyms":[{"name":"decreased growth during cellular response to cold shock","type":"exact"},{"name":"decreased vegetative cell population growth during cellular response to cold shock","type":"exact"},{"name":"hypersensitive to cold shock","type":"exact"}],"termid":"FYPO:0006084"}


id: MONDO:0011960
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A schizophrenia that has material basis in a mutation on chromosome 10q22.3.","definition_xrefs":["DOID:0070087"],"direct_ancestors":[{"relation_name":"is_a","term_name":"schizophrenia","termid":"MONDO:0005090"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002039"}],"interesting_parent_ids":["MONDO:0002039"],"is_obsolete":false,"name":"schizophrenia 11","secondary_identifiers":["MEDGEN:334205","OMIM:608078","UMLS:C1842605"],"synonyms":[{"name":"SCZD11","type":"exact"},{"name":"Sczd11","type":"related"},{"name":"schizophrenia 11","type":"exact"},{"name":"schizophrenia susceptibility locus, chromosome 10Q-related","type":"related"},{"name":"schizophrenia type 11","type":"exact"}],"termid":"MONDO:0011960","xrefs":{"Monarch":{"xref_id":"0011960"}}}


id: GO:0015719
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of allantoate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid transport","termid":"GO:0015718"},{"relation_name":"is_a","term_name":"amide transport","termid":"GO:0042886"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"allantoate transport","synonyms":[{"name":"allantoin/allantoate transport","type":"broad"}],"termid":"GO:0015719"}


id: GO:0004034
data:
  {"annotated_genes":["SJAG_03818","SJAG_02951"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[114054,114055],"is_not":false,"summary":null,"term":"GO:0004034"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: alpha-D-glucose = beta-D-glucose. Also acts on L-arabinose, D-xylose, D-galactose, maltose and lactose.","definition_xrefs":["EC:5.1.3.3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"racemase and epimerase activity, acting on carbohydrates and derivatives","termid":"GO:0016857"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02951":null,"SJAG_03818":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016853","GO:0003674"],"is_obsolete":false,"name":"aldose 1-epimerase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:ALDOSE-1-EPIMERASE-RXN"],"synonyms":[{"name":"aldose mutarotase activity","type":"related"},{"name":"mutarotase activity","type":"related"}],"termid":"GO:0004034","terms_by_termid":{"GO:0004034":null}}


id: PBO:0087313
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Small subunit of the clathrin-associated adaptor complex AP-1; AP-1 is involved in protein sorting at the trans-Golgi network; homolog of the sigma subunit of the mammalian clathrin AP-1 complex","termid":"PBO:0087313"}


id: PBO:0081354
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 177","termid":"PBO:0081354"}


id: GO:0042648
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A circular DNA molecule containing chloroplast encoded genes.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plastid chromosome","termid":"GO:0009508"},{"relation_name":"part_of","term_name":"chloroplast nucleoid","termid":"GO:0042644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005694"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005694","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"chloroplast chromosome","termid":"GO:0042648"}


id: PBO:0056023
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LSP1 pseudogene 1","termid":"PBO:0056023"}


id: MONDO:0011089
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Patent ductus venosus (PDV) is an extremely rare form of congenital portosystemic shunt that results in the diversion of portal blood into the systemic circulation. Failure of DV closure after birth leads to PDV. PDV results in portal venous blood bypassing the liver and directly entering the systemic circulation, decreasing hepatic blood flow and increasing blood volume and toxic substances in the systemic circulation.","definition_xrefs":["PMID:36329968"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"congenital portosystemic shunt","termid":"MONDO:0018811"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"patent ductus venosus","secondary_identifiers":["ICD9:747.49","UMLS:C0344688","MEDGEN:91033","SCTID:253330006","MESH:C562830","OMIM:601466"],"synonyms":[{"name":"PDV","type":"related"},{"name":"PSVS","type":"related"},{"name":"patent ductus venosus","type":"exact"},{"name":"portosystemic Venous shunt, congenital","type":"related"}],"termid":"MONDO:0011089","xrefs":{"Monarch":{"xref_id":"0011089"}}}


id: MONDO:0001440
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"keratoconjunctivitis","termid":"MONDO:0004768"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"neurotrophic keratoconjunctivitis","secondary_identifiers":["MEDGEN:509777","ICD9:370.35","SCTID:77080005","DOID:12125","UMLS:C0155084"],"termid":"MONDO:0001440","xrefs":{"Monarch":{"xref_id":"0001440"}}}


id: MONDO:0019510
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete autosomal dominant medullary cystic kidney disease without hyperuricemia (obsolete MONDO:0019510)","termid":"MONDO:0019510","xrefs":{"Monarch":{"xref_id":"0019510"}}}


id: PATO:0002081
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A broken quality inhering in a bearer by virtue of the bearer's being broken into multiple contiguous wholes.","definition_xrefs":["PATOC:GJM"],"direct_ancestors":[{"relation_name":"is_a","term_name":"broken","termid":"PATO:0001444"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"shattered","termid":"PATO:0002081"}


id: GO:0042218
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of 1-aminocyclopropane-1-carboxylate, a natural product found in plant tissues. It is a key intermediate in the biosynthesis of ethylene (ethene), a fruit-ripening hormone in plants.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"1-aminocyclopropane-1-carboxylate metabolic process","termid":"GO:0018871"},{"relation_name":"is_a","term_name":"non-proteinogenic amino acid biosynthetic process","termid":"GO:0170043"},{"relation_name":"is_a","term_name":"alpha-amino acid biosynthetic process","termid":"GO:1901607"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006520"],"is_obsolete":false,"name":"1-aminocyclopropane-1-carboxylate biosynthetic process","synonyms":[{"name":"1-aminocyclopropane-1-carboxylate anabolism","type":"exact"},{"name":"1-aminocyclopropane-1-carboxylate biosynthesis","type":"exact"},{"name":"1-aminocyclopropane-1-carboxylate formation","type":"exact"},{"name":"1-aminocyclopropane-1-carboxylate synthesis","type":"exact"}],"termid":"GO:0042218"}


id: PBO:0090208
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U2 snRNP-associated protein Msl1","termid":"PBO:0090208"}


id: PBO:0039850
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho GTPase activating protein 17","termid":"PBO:0039850"}


id: PBO:0036143
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H2A_phosphorylation_during_vegetative_growth","termid":"PBO:0036143"}


id: PBO:0078972
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ser (anticodon CGA) 4-1","termid":"PBO:0078972"}


id: MONDO:0000069
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete multiple endocrine neoplasia (obsolete MONDO:0000069)","termid":"MONDO:0000069","xrefs":{"Monarch":{"xref_id":"0000069"}}}


id: PBO:0083830
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ethanol acetyltransferase; green fluorescent protein (GFP)-fusion protein localizes to the mitochondrion","termid":"PBO:0083830"}


id: PBO:0048097
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferritin light chain pseudogene 18","termid":"PBO:0048097"}


id: GO:0004211
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete caspase-9 activity (obsolete GO:0004211)","synonyms":[{"name":"caspase-9 activity","type":"exact"}],"termid":"GO:0004211"}


id: PBO:0071640
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L36 pseudogene 4","termid":"PBO:0071640"}


id: PBO:0026821
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_ubiquitin-specific_protease_activity","termid":"PBO:0026821"}


id: MONDO:0000248
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A dengue disease that involves the most severe form of dengue fever, has material basis in Dengue virus [NCBITaxon:12637] with four serotypes (Dengue virus 1, 2, 3 and 4), which are transmitted by Aedes mosquito bite. The infection has symptom easy bruising, has symptom blood spots, has symptom bleeding gums, and has symptom nosebleeds. It is accompanied by circulatory collapse, involves hypotension, narrow pulse pressure (less than or equal to 20mm Hg), or frank shock. The shock occurs after two to six days of symptoms, followed by collapse, weak pulse, and blueness around the mouth.","definition_xrefs":["DOID:0050125"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Dengue hemorrhagic fever","termid":"MONDO:0005358"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dengue shock syndrome","secondary_identifiers":["MESH:D019595","SCTID:409671005","UMLS:C0376300","MEDGEN:83958"],"synonyms":[{"name":"DSS","type":"exact"}],"termid":"MONDO:0000248","xrefs":{"Monarch":{"xref_id":"0000248"}}}


id: MONDO:0015867
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A carcinoma arising from the vaginal epithelium. The majority of vaginal carcinomas are squamous cell carcinomas.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vaginal cancer","termid":"MONDO:0001402"},{"relation_name":"is_a","term_name":"carcinoma","termid":"MONDO:0004993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"vaginal carcinoma","secondary_identifiers":["NCIT:C3917","Orphanet:180247","DOID:0050918","UMLS:C0262659","GARD:9348","MEDGEN:82653"],"synonyms":[{"name":"cancer of the vagina","type":"broad"},{"name":"cancer of vagina","type":"broad"},{"name":"carcinoma of the vagina","type":"exact"},{"name":"carcinoma of vagina","type":"exact"},{"name":"vagina cancer","type":"broad"},{"name":"vagina carcinoma","type":"exact"},{"name":"vaginal cancer","type":"broad"},{"name":"vaginal cancer, NOS","type":"broad"},{"name":"vaginal carcinoma","type":"exact"},{"name":"vaginal malignant epithelial tumor","type":"broad"},{"name":"vaginal malignant epithelial tumour","type":"broad"}],"termid":"MONDO:0015867","xrefs":{"Monarch":{"xref_id":"0015867"}}}


id: PBO:0031801
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_mitotic_G2/M_phase_transition","termid":"PBO:0031801"}


id: GO:1901834
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of deadenylation-independent decapping of nuclear-transcribed mRNA.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mRNA metabolic process","termid":"GO:1903311"},{"relation_name":"regulates","term_name":"deadenylation-independent decapping of nuclear-transcribed mRNA","termid":"GO:0031087"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016071"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0016071"],"is_obsolete":false,"name":"regulation of deadenylation-independent decapping of nuclear-transcribed mRNA","synonyms":[{"name":"regulation of deadenylation-independent decapping of nuclear mRNA","type":"related"},{"name":"regulation of deadenylylation-independent decapping","type":"exact"}],"termid":"GO:1901834"}


id: PBO:0005421
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin Cig1","termid":"PBO:0005421"}


id: MONDO:0007916
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Primary intestinal lymphangiectasia (PIL) is a rare intestinal disease characterized by dilated intestinal lacteals which cause lymph leakage into the small bowel lumen. Clinical manifestations include edema related to hypoalbuminemia (protein-losing enteropathy), asthenia, diarrhea, lymphedema and failure to thrive in children.","definition_xrefs":["Orphanet:90362"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intestinal lymphangiectasia","termid":"MONDO:0018178"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"primary intestinal lymphangiectasia","secondary_identifiers":["NORD:1609","SCTID:6124009","ICD9:457.1","OMIM:152800","UMLS:C2931241","icd11.foundation:52162548","MEDGEN:444009","GARD:7873"],"synonyms":[{"name":"Waldmann disease","type":"exact"},{"name":"Waldmann's disease","type":"related"},{"name":"familial Waldmann's disease (type)","type":"related"},{"name":"lymphangiectasia, intestinal","type":"related"},{"name":"primary intestinal lymphangiectasis","type":"related"}],"termid":"MONDO:0007916","xrefs":{"Monarch":{"xref_id":"0007916"}}}


id: GO:0048755
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of branches in a nerve are generated and organized. This term refers to an anatomical structure (nerve) not a cell (neuron).","definition_xrefs":["GOC:jid","GOC:dph","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"morphogenesis of a branching structure","termid":"GO:0001763"},{"relation_name":"part_of","term_name":"nervous system development","termid":"GO:0007399"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"branching morphogenesis of a nerve","termid":"GO:0048755"}


id: PBO:0031519
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_DNA_damage_checkpoint_override_in_response_to_caffeine","termid":"PBO:0031519"}


id: FYPO:0005109
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at replication origins begins earlier than normal.","definition_xrefs":["PomBase:mah","PMID:21518960"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to chromatin during vegetative growth","termid":"FYPO:0000452"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"premature protein localization to chromatin at replication origin","synonyms":[{"name":"advanced protein localization to chromatin at replication origin","type":"exact"},{"name":"premature protein localisation to chromatin at replication origin","type":"exact"},{"name":"premature protein localization to chromatin at replication origins during mitotic cell cycle","type":"related"},{"name":"premature protein localization to chromatin at replication origins during vegetative growth","type":"exact"}],"termid":"FYPO:0005109"}


id: PBO:0013474
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trichostatin A partially suppresses wee1delta sensitivity to UV and hydroxyurea","termid":"PBO:0013474"}


id: PBO:0090406
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GATOR2-SEACAT complex/COPII-coated vesicle component/nuclear pore outer ring WD repeat protein Sec13","termid":"PBO:0090406"}


id: GO:0043328
data:
  {"annotated_genes":["SJAG_03250","SJAG_01242","SJAG_04489","SJAG_01981","SJAG_03756","SJAG_00416","SJAG_02117","SJAG_00821","SJAG_01586","SJAG_02912","SJAG_01281","SJAG_02584","SJAG_03783","SJAG_05303","SJAG_04024","SJAG_03892","SJAG_04912","SJAG_04936","SJAG_04349"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71266,71334,72512,72653,73666,73687,78031,78547,78782,88275,88446,91828,91963,96286,98282,101213,106888,109698,115041],"is_not":false,"summary":null,"term":"GO:0043328"}]},"cv_name":"biological_process","definition":"The process of directing proteins towards the vacuole that contributes to protein catabolism via the multivesicular body (MVB) pathway.","definition_xrefs":["GOC:jl","PMID:11511343"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein transport","termid":"GO:0006886"},{"relation_name":"is_a","term_name":"late endosome to vacuole transport via multivesicular body sorting pathway","termid":"GO:0032511"},{"relation_name":"is_a","term_name":"establishment of protein localization to vacuole","termid":"GO:0072666"},{"relation_name":"part_of","term_name":"ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway","termid":"GO:0043162"}],"gene_count":19,"genes_by_uniquename":{"SJAG_00416":null,"SJAG_00821":null,"SJAG_01242":null,"SJAG_01281":null,"SJAG_01586":null,"SJAG_01981":null,"SJAG_02117":null,"SJAG_02584":null,"SJAG_02912":null,"SJAG_03250":null,"SJAG_03756":null,"SJAG_03783":null,"SJAG_03892":null,"SJAG_04024":null,"SJAG_04349":null,"SJAG_04489":null,"SJAG_04912":null,"SJAG_04936":null,"SJAG_05303":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0030163"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0030163","GO:0016192","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"protein targeting to vacuole during ubiquitin-dependent protein breakdown via the MVB pathway","type":"exact"},{"name":"protein targeting to vacuole during ubiquitin-dependent protein catabolic process via the MVB pathway","type":"related"},{"name":"protein targeting to vacuole during ubiquitin-dependent protein degradation via the MVB pathway","type":"exact"},{"name":"protein vacuolar targeting during ubiquitin-dependent protein catabolic process via the MVB pathway","type":"exact"},{"name":"protein vacuolar targeting during ubiquitin-dependent protein catabolism via the MVB pathway","type":"exact"},{"name":"protein-vacuolar targeting during ubiquitin-dependent protein breakdown via the MVB pathway","type":"exact"},{"name":"protein-vacuolar targeting during ubiquitin-dependent protein degradation via the MVB pathway","type":"exact"},{"name":"protein-vacuole targeting during ubiquitin-dependent protein catabolic process via the MVB pathway","type":"exact"},{"name":"protein-vacuole targeting during ubiquitin-dependent protein catabolism via the MVB pathway","type":"exact"}],"termid":"GO:0043328","terms_by_termid":{"GO:0043328":null}}


id: MONDO:0009416
data:
  {"annotated_genes":["SJAG_02426","SJAG_04206","SJAG_04394"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85376,85377,85378],"is_not":false,"summary":null,"term":"MONDO:0009416"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"endocrine system disorder","termid":"MONDO:0005151"},{"relation_name":"is_a","term_name":"overgrowth syndrome","termid":"MONDO:0019716"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02426":null,"SJAG_04206":null,"SJAG_04394":null},"genotype_count":0,"is_obsolete":false,"name":"hypoinsulinemic hypoglycemia and body hemihypertrophy","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["Orphanet:293964","GARD:17352","UMLS:C3278384","MEDGEN:480014","DOID:0112263","OMIM:240900"],"synonyms":[{"name":"HIHGHH","type":"related"},{"name":"hypoinsulinemic hypoglycemia with hemihypertrophy","type":"related"}],"termid":"MONDO:0009416","terms_by_termid":{"MONDO:0009416":null},"xrefs":{"Monarch":{"xref_id":"0009416"}}}


id: MONDO:0012825
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare malignant soft tissue neoplasm of uncertain differentiation, characterized by the presence of chondroblast-like cells in a myxoid stroma and a multinodular growth pattern. The most common sites of involvement are the deep soft tissues of the extremities, particularly the thigh. It usually presents as an enlarging soft tissue mass. Patients may have long survivals, but local recurrences and metastases occur in approximately half of the cases. The most common site of metastasis is the lungs.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"soft tissue sarcoma","termid":"MONDO:0018078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"extraskeletal myxoid chondrosarcoma","secondary_identifiers":["OMIM:612237","SCTID:404079008","Orphanet:209916","UMLS:C1275278","DOID:6496","GARD:17105","ICD9:171.9","MEDGEN:220892","MESH:C563195","ONCOTREE:EMCHS","NCIT:C27502"],"synonyms":[{"name":"EMC","type":"related"},{"name":"chondrosarcoma, extraskeletal myxoid","type":"related"},{"name":"extraosseous chondrosarcoma","type":"exact"},{"name":"extraskeletal chondrosarcoma","type":"exact"},{"name":"myxoid extraosseous chondrosarcoma","type":"exact"},{"name":"myxoid extraskeletal chondrosarcoma","type":"exact"}],"termid":"MONDO:0012825","xrefs":{"Monarch":{"xref_id":"0012825"}}}


id: MONDO:0030519
data:
  {"annotated_genes":["SJAG_00222"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86431],"is_not":false,"summary":null,"term":"MONDO:0030519"}]},"cv_name":"mondo","definition":"An autosomal recessive primary immunodeficiency characterized by recurrent bacterial infections associated with agammaglobulinemia and absence of circulating B cells. Additional features include failure to thrive and skin involvement. The severity is variable: more severe cases may require hematopoietic stem cell transplantation, whereas others can be treated effectively with Ig replacement therapy.","definition_xrefs":["OMIM:619693"],"direct_ancestors":[{"relation_name":"is_a","term_name":"agammaglobulinemia","termid":"MONDO:0015977"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00222":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"agammaglobulinemia 9, autosomal recessive","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5562059","MEDGEN:1794269","DOID:0081141"],"synonyms":[{"name":"AGM9","type":"exact"}],"termid":"MONDO:0030519","terms_by_termid":{"MONDO:0030519":null},"xrefs":{"Monarch":{"xref_id":"0030519"}}}


id: PBO:0078441
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor gamma constant 1","termid":"PBO:0078441"}


id: MONDO:0014159
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Spectrin-associated autosomal recessive cerebellar ataxia is a rare, genetic neurological disease, due to SPTBN2 mutations, characterized by global development delay in infancy, followed by childhood-onset gait ataxia with limb dysmetria and dysdiadochokinesia, mild to severe intellectual disability, development of cerebellar atrophy, and abnormal eye movements (including a convergent squint, hypometric saccades, jerky pursuit movements and incomplete range of movement).","definition_xrefs":["Orphanet:352403"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive cerebellar ataxia","termid":"MONDO:0015244"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0006025"],"is_obsolete":false,"name":"autosomal recessive spinocerebellar ataxia 14","secondary_identifiers":["SCTID:763351003","MEDGEN:1636182","GARD:17516","DOID:0080058","OMIM:615386","UMLS:C4706415"],"synonyms":[{"name":"Ataxie spinocérébelleuse à début infantile avec retard psychomoteur","type":"exact"},{"name":"SCAR14","type":"exact"},{"name":"SPARCA","type":"exact"},{"name":"SPARCA1","type":"exact"},{"name":"SPTBN2 autosomal recessive cerebellar ataxia","type":"exact"},{"name":"autosomal recessive cerebellar ataxia caused by mutation in SPTBN2","type":"exact"},{"name":"autosomal recessive cerebellar ataxia-cognitive defect syndrome","type":"exact"},{"name":"autosomal recessive spinocerebellar ataxia type 14","type":"exact"},{"name":"cerebellar ataxia, autosomal recessive, spectrin-associated, 1","type":"related"},{"name":"infantile-onset spinocerebellar ataxia-psychomotor delay syndrome","type":"exact"},{"name":"spectrin-associated autosomal recessive cerebellar ataxia","type":"related"},{"name":"spectrin-associated autosomal recessive cerebellar ataxia type 1","type":"exact"},{"name":"spinocerebellar ataxia, autosomal recessive 14","type":"related"},{"name":"spinocerebellar ataxia, autosomal recessive type 14","type":"exact"}],"termid":"MONDO:0014159","xrefs":{"Monarch":{"xref_id":"0014159"}}}


id: GO:0006840
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of alpha-ketoglutarate and malate into, out of or within a mitochondrion.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete mitochondrial alpha-ketoglutarate/malate transport (obsolete GO:0006840)","synonyms":[{"name":"mitochondrial alpha-ketoglutarate/malate transport","type":"exact"},{"name":"mitochondrial oxoglutarate/malate transport","type":"exact"}],"termid":"GO:0006840"}


id: GO:0006059
data:
  {"annotated_genes":["SJAG_00237"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73002],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006062"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving hexitols, any alditol with a chain of six carbon atoms in the molecule.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alditol metabolic process","termid":"GO:0019400"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00237":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0005975"],"is_obsolete":false,"name":"hexitol metabolic process","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"hexitol metabolism","type":"exact"},{"name":"sugar alcohol (hexitol) metabolic process","type":"exact"},{"name":"sugar alcohol (hexitol) metabolism","type":"exact"}],"termid":"GO:0006059","terms_by_termid":{"GO:0006062":null}}


id: GO:0140608
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and increases the activity of a cysteine-type endopeptidase.","definition_xrefs":["PMID:32558991"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endopeptidase activator activity","termid":"GO:0061133"},{"relation_name":"positively_regulates","term_name":"cysteine-type endopeptidase activity","termid":"GO:0004197"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016787"},{"rel_name":"positively_regulates","termid":"GO:0140096"},{"rel_name":"regulates","termid":"GO:0140096"},{"rel_name":"regulates","termid":"GO:0003824"},{"rel_name":"positively_regulates","termid":"GO:0008233"},{"rel_name":"positively_regulates","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"positively_regulates","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"regulates","termid":"GO:0008233"}],"interesting_parent_ids":["GO:0098772","GO:0003824","GO:0140096","GO:0008233","GO:0030234","GO:0140677","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"cysteine-type endopeptidase activator activity","synonyms":[{"name":"caspase activator activator activity","type":"narrow"}],"termid":"GO:0140608"}


id: PBO:0030162
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cellular_phosphatidylcholine_level","termid":"PBO:0030162"}


id: GO:0000101
data:
  {"annotated_genes":["SJAG_04295","SJAG_00991"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[63669],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903712"},{"annotations":[93659],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1905626"}]},"cv_name":"biological_process","definition":"The directed movement of amino acids containing sulfur (cystine, methionine and their derivatives) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic acid transport","termid":"GO:0046942"},{"relation_name":"is_a","term_name":"nitrogen compound transport","termid":"GO:0071705"},{"relation_name":"is_a","term_name":"sulfur compound transport","termid":"GO:0072348"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00991":null,"SJAG_04295":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"sulfur amino acid transport","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"sulphur amino acid transport","type":"exact"}],"termid":"GO:0000101","terms_by_termid":{"GO:1903712":null,"GO:1905626":null}}


id: GO:0045663
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of myoblast differentiation. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers.","definition_xrefs":["CL:0000056","GOC:mtg_muscle","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell differentiation","termid":"GO:0045597"},{"relation_name":"is_a","term_name":"regulation of myoblast differentiation","termid":"GO:0045661"},{"relation_name":"positively_regulates","term_name":"myoblast differentiation","termid":"GO:0045445"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of myoblast differentiation","synonyms":[{"name":"activation of myoblast differentiation","type":"narrow"},{"name":"stimulation of myoblast differentiation","type":"narrow"},{"name":"up regulation of myoblast differentiation","type":"exact"},{"name":"up-regulation of myoblast differentiation","type":"exact"},{"name":"upregulation of myoblast differentiation","type":"exact"}],"termid":"GO:0045663"}


id: MONDO:0003572
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A nonkeratinizing carcinoma which occurs predominantly in the nasopharynx but also in the tonsils and rarely in other anatomic sites. It is characterized by the presence of large malignant cells with vesicular nuclei, prominent nucleoli, syncytial growth pattern, and a lymphoplasmacytic infiltrate.","definition_xrefs":["NCIT:C4107"],"direct_ancestors":[{"relation_name":"is_a","term_name":"large cell carcinoma","termid":"MONDO:0005232"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"nasopharyngeal type undifferentiated carcinoma","secondary_identifiers":["MEDGEN:87199","DOID:5660","ICDO:8082/3","UMLS:C0334254"],"synonyms":[{"name":"Schmincke tumor","type":"exact"},{"name":"Schmincke tumour","type":"exact"},{"name":"Schminke tumor","type":"exact"},{"name":"Schminke tumour","type":"exact"},{"name":"lymphoepithelial carcinoma","type":"exact"},{"name":"lymphoepithelioma","type":"exact"},{"name":"lymphoepithelioma-like carcinoma","type":"exact"},{"name":"nasopharyngeal type undifferentiated carcinoma","type":"exact"}],"termid":"MONDO:0003572","xrefs":{"Monarch":{"xref_id":"0003572"}}}


id: MONDO:0022871
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"brain disorder","termid":"MONDO:0005560"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"corpus callosum agenesis of blepharophimosis robin type","termid":"MONDO:0022871","xrefs":{"Monarch":{"xref_id":"0022871"}}}


id: PBO:0000966
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-protein ligase E3 Meu34 (predicted)","termid":"PBO:0000966"}


id: MONDO:0011633
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autosomal dominant Charcot-Marie-Tooth disease type 2C (CMT2C) is a form of axonal Charcot-Marie-Tooth disease, a peripheral sensorimotor neuropathy, characterized by the association of vocal cord anomalies, impairment of respiratory muscles and sensorineural hearing loss with the distal hands and feet weakness. Onset is between infancy and the 6th decade.","definition_xrefs":["Orphanet:99937"],"direct_ancestors":[{"relation_name":"is_a","term_name":"motor peripheral neuropathy","termid":"MONDO:0002316"},{"relation_name":"is_a","term_name":"Charcot-Marie-Tooth disease type 2","termid":"MONDO:0018993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244"],"is_obsolete":false,"name":"Charcot-Marie-Tooth disease axonal type 2C","secondary_identifiers":["DOID:0110182","GARD:1250","UMLS:C1853710","OMIM:606071","MEDGEN:342947","SCTID:717010007"],"synonyms":[{"name":"CMT 2C","type":"related"},{"name":"CMT2C","type":"exact"},{"name":"Charcot Marie Tooth disease type 2C","type":"related"},{"name":"Charcot-Marie-Tooth disease type 2 caused by mutation in TRPV4","type":"exact"},{"name":"Charcot-Marie-Tooth disease type 2C","type":"related"},{"name":"Charcot-Marie-Tooth disease, axonal, autosomal dominant, type 2C","type":"related"},{"name":"Charcot-Marie-Tooth disease, axonal, type 2C","type":"related"},{"name":"Charcot-Marie-Tooth neuropathy type 2C","type":"exact"},{"name":"Charcot-Marie-Tooth neuropathy, type 2C","type":"related"},{"name":"HMSN 2 C","type":"related"},{"name":"HMSN 2C","type":"related"},{"name":"HMSN2C","type":"exact"},{"name":"TRPV4 Charcot-Marie-Tooth disease type 2","type":"exact"},{"name":"autosomal cominant axonal Charcot-Marie-Tooth disease type 2C","type":"exact"},{"name":"autosomal dominant Charcot-Marie-Tooth disease type 2C","type":"exact"},{"name":"hereditary motor and sensory neuropathy 2 C","type":"related"},{"name":"hereditary motor and sensory neuropathy type IIc","type":"exact"},{"name":"hereditary motor and sensory neuropathy, type 2C","type":"related"},{"name":"hereditary motor and sensory neuropathy, type IIC","type":"related"}],"termid":"MONDO:0011633","xrefs":{"Monarch":{"xref_id":"0011633"}}}


id: PBO:0112786
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription factor Rgt1","termid":"PBO:0112786"}


id: PBO:0040677
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCAR1 pseudogene 2","termid":"PBO:0040677"}


id: PR:O74515
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cia1 gene.","definition_xrefs":["UniProtKB:O74515","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone chaperone cia1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC663.05c","synonyms":[{"name":"Spom972h-cia1","type":"exact"},{"name":"anti-silencing function protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74515"}


id: MONDO:0007263
data:
  {"annotated_genes":["SJAG_00228","SJAG_02717","SJAG_04901","SJAG_04781","SJAG_02757"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86958],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014340"},{"annotations":[87338],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0015001"},{"annotations":[86273],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013529"},{"annotations":[87514,87515],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013966"},{"annotations":[87030,87031],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032915"}]},"cv_name":"mondo","definition":"Any variation from the normal rate or rhythm (which may include the origin of the impulse and/or its subsequent propagation) in the heart.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heart disorder","termid":"MONDO:0005267"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00228":null,"SJAG_02717":null,"SJAG_02757":null,"SJAG_04781":null,"SJAG_04901":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"cardiac rhythm disease","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:2039","NCIT:C2881","UMLS:C0003811","SCTID:698247007","ICD9:427.9"],"synonyms":[{"name":"arrhythmia","type":"exact"}],"termid":"MONDO:0007263","terms_by_termid":{"MONDO:0013529":null,"MONDO:0013966":null,"MONDO:0014340":null,"MONDO:0015001":null,"MONDO:0032915":null},"xrefs":{"Monarch":{"xref_id":"0007263"}}}


id: GO:0008513
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of organic cations from one side of a membrane to the other, up the solute's concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic cation transmembrane transporter activity","termid":"GO:0015101"},{"relation_name":"is_a","term_name":"secondary active transmembrane transporter activity","termid":"GO:0015291"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"secondary active organic cation transmembrane transporter activity","secondary_identifiers":["Reactome:R-HSA-549241","GO:0015354"],"synonyms":[{"name":"organic cation porter activity","type":"related"},{"name":"polyspecific organic cation transmembrane transporter activity","type":"narrow"}],"termid":"GO:0008513"}


id: MONDO:0013256
data:
  {"annotated_genes":["SJAG_02846","SJAG_00441","SJAG_01804"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86481,86482,86483],"is_not":false,"summary":null,"term":"MONDO:0013256"}]},"cv_name":"mondo","definition":"15q24 microdeletion syndrome is a rare chromosomal anomaly characterized cytogenetically by a 1.7-6.1 Mb deletion in chromosome 15q24 and clinically by pre- and post-natal growth retardation, intellectual disability, distinct facial features, and genital, skeletal, and digital anomalies.","definition_xrefs":["Orphanet:94065"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"},{"relation_name":"is_a","term_name":"partial deletion of the long arm of chromosome 15","termid":"MONDO:0016913"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00441":null,"SJAG_01804":null,"SJAG_02846":null},"genotype_count":0,"is_obsolete":false,"name":"chromosome 15q24 deletion syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:12219","MESH:C579849","DOID:0060395","MEDGEN:462024","UMLS:C3150674","DECIPHER:66","SCTID:699308002","OMIM:613406"],"synonyms":[{"name":"15q24 microdeletion syndrome","type":"exact"},{"name":"15q24 recurrent microdeletion syndrome","type":"exact"},{"name":"Del(15)(q24)","type":"exact"},{"name":"WITKOS","type":"related"},{"name":"Witteveen-Kolk syndrome","type":"related"},{"name":"chromosome 15Q24 Duplication syndrome","type":"related"},{"name":"chromosome 15q24 deletion syndrome","type":"exact"},{"name":"monosomy 15q24","type":"exact"}],"termid":"MONDO:0013256","terms_by_termid":{"MONDO:0013256":null},"xrefs":{"Monarch":{"xref_id":"0013256"}}}


id: PBO:0082098
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"7,8-diamino-pelargonic acid aminotransferase (DAPA); catalyzes the second step in the biotin biosynthesis pathway; BIO3 is in a cluster of 3 genes (BIO3, BIO4, and BIO5) that mediate biotin synthesis; BIO3 and BIO4 were acquired by horizontal gene transfer (HGT) from bacteria","termid":"PBO:0082098"}


id: MONDO:0002173
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A tumor that grows from a nerve or is composed of nerve cells and nerve fibers.","definition_xrefs":["NCIT:C3275"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"nervous system benign neoplasm","termid":"MONDO:0000648"},{"relation_name":"excluded_subClassOf","term_name":"nerve sheath neoplasm","termid":"MONDO:0002547"},{"relation_name":"is_a","term_name":"peripheral nervous system disorder","termid":"MONDO:0003620"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuroma","secondary_identifiers":["UMLS:C0027858","ICDO:9570/0","SCTID:443892003","DOID:2001","ICD9:215.9","MEDGEN:14352","EFO:0009619","MESH:D009463"],"termid":"MONDO:0002173","xrefs":{"Monarch":{"xref_id":"0002173"}}}


id: GO:1990781
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electrical stimulus given while being held immobile.","definition_xrefs":["PMID:17008368"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to immobilization stress","termid":"GO:0035902"},{"relation_name":"is_a","term_name":"response to electrical stimulus","termid":"GO:0051602"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to immobilization stress combined with electrical stimulus","termid":"GO:1990781"}


id: PBO:0083849
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; has similarity to E. coli RNase PH and to human hRrp43p (OIP2, EXOSC8); protein abundance increases in response to DNA replication stress","termid":"PBO:0083849"}


id: PBO:0042267
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chaperonin containing TCP1 subunit 6 pseudogene 2","termid":"PBO:0042267"}


id: PBO:0043418
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carnosine dipeptidase 1","termid":"PBO:0043418"}


id: PR:P87242
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An HD domain-containing protein 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO04312"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HD domain-containing protein C4G3.17 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC4G3.17","secondary_identifiers":["UniProtKB:P87242"],"synonyms":[{"name":"Spom972h-HDDC2","type":"exact"}],"termid":"PR:P87242"}


id: PBO:0085796
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; computational analysis of large-scale protein-protein interaction data suggests a possible role in actin cytoskeleton organization; potential Cdc28p substrate","termid":"PBO:0085796"}


id: GO:1903481
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of actin filament organization involved in mitotic actomyosin contractile ring assembly.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","GOC:mtg_cell_cycle"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of actin filament organization involved in mitotic actomyosin contractile ring assembly (obsolete GO:1903481)","synonyms":[{"name":"down regulation of actin filament organisation involved in contractile ring assembly involved in mitotic cytokinesis","type":"exact"},{"name":"down regulation of actin filament organisation involved in mitotic actomyosin contractile ring assembly","type":"exact"},{"name":"down regulation of actin filament organization involved in mitotic actomyosin contractile ring assembly","type":"exact"},{"name":"down-regulation of actin filament organisation involved in contractile ring assembly involved in mitotic cytokinesis","type":"exact"},{"name":"down-regulation of actin filament organisation involved in mitotic actomyosin contractile ring assembly","type":"exact"},{"name":"down-regulation of actin filament organization involved in mitotic actomyosin contractile ring assembly","type":"exact"},{"name":"downregulation of actin filament organisation involved in contractile ring assembly involved in mitotic cytokinesis","type":"exact"},{"name":"downregulation of actin filament organisation involved in mitotic actomyosin contractile ring assembly","type":"exact"},{"name":"downregulation of actin filament organization involved in mitotic actomyosin contractile ring assembly","type":"exact"},{"name":"inhibition of actin filament organisation involved in contractile ring assembly involved in mitotic cytokinesis","type":"narrow"},{"name":"inhibition of actin filament organisation involved in mitotic actomyosin contractile ring assembly","type":"narrow"},{"name":"inhibition of actin filament organization involved in mitotic actomyosin contractile ring assembly","type":"narrow"},{"name":"negative regulation of actin filament organisation involved in contractile ring assembly involved in mitotic cytokinesis","type":"exact"},{"name":"negative regulation of actin filament organisation involved in mitotic actomyosin contractile ring assembly","type":"exact"}],"termid":"GO:1903481"}


id: PBO:0055132
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2551","termid":"PBO:0055132"}


id: GO:0006595
data:
  {"annotated_genes":["SJAG_03288","SJAG_04904","SJAG_00043","SJAG_04546","SJAG_03632","SJAG_04481","SJAG_04130"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[101095],"is_not":false,"summary":null,"term":"GO:0006595"},{"annotations":[111503],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0170066"},{"annotations":[76157],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033387"},{"annotations":[87723],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009447"},{"annotations":[78137,75174],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008295"},{"annotations":[71051],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008216"},{"annotations":[103075,78136],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006597"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving polyamines, any organic compound containing two or more amino groups.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biogenic amine metabolic process","termid":"GO:0006576"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00043":null,"SJAG_03288":null,"SJAG_03632":null,"SJAG_04130":null,"SJAG_04481":null,"SJAG_04546":null,"SJAG_04904":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"polyamine metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-351202"],"synonyms":[{"name":"polyamine metabolism","type":"exact"}],"termid":"GO:0006595","terms_by_termid":{"GO:0006595":null,"GO:0006597":null,"GO:0008216":null,"GO:0008295":null,"GO:0009447":null,"GO:0033387":null,"GO:0170066":null}}


id: GO:0032911
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of production of transforming growth factor-beta1.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of transforming growth factor beta1 production","termid":"GO:0032908"},{"relation_name":"is_a","term_name":"negative regulation of transforming growth factor beta production","termid":"GO:0071635"},{"relation_name":"negatively_regulates","term_name":"transforming growth factor beta1 production","termid":"GO:0032905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of transforming growth factor beta1 production","synonyms":[{"name":"down regulation of transforming growth factor-beta1 production","type":"exact"},{"name":"down-regulation of transforming growth factor-beta1 production","type":"exact"},{"name":"downregulation of transforming growth factor-beta1 production","type":"exact"},{"name":"inhibition of transforming growth factor-beta1 production","type":"narrow"},{"name":"negative regulation of TGF-B1 production","type":"exact"},{"name":"negative regulation of TGFB1 production","type":"exact"},{"name":"negative regulation of transforming growth factor-beta1 production","type":"exact"}],"termid":"GO:0032911"}


id: PR:Q09920
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- fio1 gene.","definition_xrefs":["UniProtKB:Q09920","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iron transport multicopper oxidase fio1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1F7.08","synonyms":[{"name":"Spom972h-fio1","type":"exact"}],"termid":"PR:Q09920"}


id: PBO:0065181
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein S","termid":"PBO:0065181"}


id: PBO:0053397
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 327","termid":"PBO:0053397"}


id: PBO:0054397
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1793","termid":"PBO:0054397"}


id: SO:0001297
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"N6_methyladenosine is a modified adenosine.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_adenosine","termid":"SO:0001273"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N6_methyladenosine","secondary_identifiers":["RNAMOD:003"],"synonyms":[{"name":"N6 methyladenosine","type":"exact"},{"name":"N6-methyladenosine","type":"exact"},{"name":"m6A","type":"exact"}],"termid":"SO:0001297"}


id: SO:0001205
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region (DNA) to which the SP6 RNA polymerase binds, to begin transcription.","definition_xrefs":["xenbase:jb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Phage_RNA_Polymerase_Promoter","termid":"SO:0001204"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SP6_RNA_Polymerase_Promoter","synonyms":[{"name":"SP6 RNA Polymerase Promoter","type":"exact"}],"termid":"SO:0001205"}


id: PBO:0108607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER to Golgi ceramide transport protein, lipocalin superfamily Svf1","termid":"PBO:0108607"}


id: PBO:0003732
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BAR adaptor protein","termid":"PBO:0003732"}


id: PBO:0055567
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3003","termid":"PBO:0055567"}


id: PBO:0087146
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding subunit of the TRAMP nuclear RNA surveillance complex; involved in nuclear RNA processing and degradation; involved in TRAMP complex assembly as a bridge between Mtr4p and Trf4p; stimulates the poly(A) polymerase activity of Pap2p in vitro; has 5 zinc knuckle motifs; AIR2 has a paralog, AIR1, that arose from the whole genome duplication; Air2p and Air1p have nonredundant roles in regulation of substrate specificity of the exosome","termid":"PBO:0087146"}


id: PBO:0028550
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_rate_of_microtubule_depolymerization","termid":"PBO:0028550"}


id: PBO:0067910
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 212","termid":"PBO:0067910"}


id: PBO:0045454
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"down-regulator of transcription 1","termid":"PBO:0045454"}


id: GO:0002647
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of central tolerance induction.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of tolerance induction","termid":"GO:0002644"},{"relation_name":"is_a","term_name":"regulation of central tolerance induction","termid":"GO:0002646"},{"relation_name":"negatively_regulates","term_name":"central tolerance induction","termid":"GO:0002508"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of central tolerance induction","synonyms":[{"name":"down regulation of central tolerance induction","type":"exact"},{"name":"down-regulation of central tolerance induction","type":"exact"},{"name":"downregulation of central tolerance induction","type":"exact"},{"name":"inhibition of central tolerance induction","type":"narrow"}],"termid":"GO:0002647"}


id: PBO:0070896
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L17 pseudogene 4","termid":"PBO:0070896"}


id: PBO:0041479
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 11 open reading frame 80","termid":"PBO:0041479"}


id: MONDO:1011758
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"integumentary system disorder, non-human animal","termid":"MONDO:1011328"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc deficiency-like syndrome, non-human animal","secondary_identifiers":["OMIA:001935"],"termid":"MONDO:1011758","xrefs":{"Monarch":{"xref_id":"1011758"}}}


id: GO:0044338
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes involved in mesenchymal stem cell differentiation.","definition_xrefs":["GOC:jl","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"canonical Wnt signaling pathway","termid":"GO:0060070"},{"relation_name":"part_of","term_name":"mesenchymal stem cell differentiation","termid":"GO:0072497"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"canonical Wnt signaling pathway involved in mesenchymal stem cell differentiation","synonyms":[{"name":"canonical Wnt receptor signaling pathway involved in mesenchymal stem cell differentiation","type":"exact"},{"name":"canonical Wnt receptor signalling pathway involved in mesenchymal stem cell differentiation","type":"exact"},{"name":"canonical Wnt-activated signaling pathway involved in mesenchymal stem cell differentiation","type":"exact"}],"termid":"GO:0044338"}


id: GO:0032383
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the directed movement of cholesterol within cells.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cholesterol transport","termid":"GO:0032374"},{"relation_name":"is_a","term_name":"regulation of intracellular sterol transport","termid":"GO:0032380"},{"relation_name":"regulates","term_name":"intracellular cholesterol transport","termid":"GO:0032367"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of intracellular cholesterol transport","termid":"GO:0032383"}


id: GO:1903332
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of protein folding.","definition_xrefs":["GO_REF:0000058","GOC:vw","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular process","termid":"GO:0050794"},{"relation_name":"regulates","term_name":"protein folding","termid":"GO:0006457"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006457"}],"interesting_parent_ids":["GO:0006457","GO:0008150"],"is_obsolete":false,"name":"regulation of protein folding","synonyms":[{"name":"regulation of alpha-tubulin folding","type":"narrow"},{"name":"regulation of beta-tubulin folding","type":"narrow"},{"name":"regulation of chaperone activity","type":"related"},{"name":"regulation of chaperonin ATPase activity","type":"related"},{"name":"regulation of chaperonin-mediated tubulin folding","type":"narrow"},{"name":"regulation of co-chaperone activity","type":"related"},{"name":"regulation of co-chaperonin activity","type":"related"},{"name":"regulation of glycoprotein-specific chaperone activity","type":"related"},{"name":"regulation of non-chaperonin molecular chaperone ATPase activity","type":"related"},{"name":"regulation of protein complex assembly, multichaperone pathway","type":"related"}],"termid":"GO:1903332"}


id: MONDO:0016121
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete congenital myotonia (obsolete MONDO:0016121)","secondary_identifiers":["icd11.foundation:1916703439","Orphanet:206973"],"termid":"MONDO:0016121","xrefs":{"Monarch":{"xref_id":"0016121"}}}


id: PBO:0052997
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"laminin subunit beta 2","termid":"PBO:0052997"}


id: GO:0021713
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the inferior olivary nucleus over time, from its formation to the mature structure. The inferior olivary nucleus is a capsule-shaped structure in the ventral medulla located just lateral and dorsal to the medullary pyramids. Neurons in the inferior olivary nucleus are the source of climbing fiber input to the cerebellar cortex; these neurons have been implicated in various functions, such as learning and timing of movements.","definition_xrefs":["GOC:dph","GOC:dgh","GOC:jid","ISBN:0838580343","GO_REF:0000021","GOC:cls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neural nucleus development","termid":"GO:0048857"},{"relation_name":"part_of","term_name":"medulla oblongata development","termid":"GO:0021550"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"inferior olivary nucleus development","synonyms":[{"name":"inferior olive development","type":"related"}],"termid":"GO:0021713"}


id: PBO:0042993
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CHEK2 pseudogene 6","termid":"PBO:0042993"}


id: PBO:0036240
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nrd1 complex poly(A) binding protein Nab3 (predicted)","termid":"PBO:0036240"}


id: MONDO:0003949
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete cervical adenoma malignum (obsolete MONDO:0003949)","termid":"MONDO:0003949","xrefs":{"Monarch":{"xref_id":"0003949"}}}


id: PBO:0078771
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Asn (anticodon GTT) 2-3","termid":"PBO:0078771"}


id: GO:0005049
data:
  {"annotated_genes":["SJAG_03693","SJAG_01358","SJAG_02661","SJAG_01534","SJAG_04366"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71926,76496,76665,113865,117594],"is_not":false,"summary":null,"term":"GO:0005049"}]},"cv_name":"molecular_function","definition":"Combining with a nuclear export signal (NES) on a cargo to be transported, to mediate transport of a the cargo through the nuclear pore, from the nuclear lumen to the cytoplasm. The cargo can be either a RNA or a protein.","definition_xrefs":["PMID:25802992","PMID:28713609","GOC:bf","GOC:pg","GOC:vw","PMID:11743003","GOC:mah","Wikipedia:Nuclear_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleocytoplasmic carrier activity","termid":"GO:0140142"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01358":null,"SJAG_01534":null,"SJAG_02661":null,"SJAG_03693":null,"SJAG_04366":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140142"},{"rel_name":"is_a","termid":"GO:0140104"}],"interesting_parent_ids":["GO:0003674","GO:0140142","GO:0140104"],"is_obsolete":false,"name":"nuclear export signal receptor activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0008262","Reactome:R-HSA-178215"],"synonyms":[{"name":"NES receptor","type":"exact"},{"name":"exportin activity","type":"related"},{"name":"importin-alpha binding","type":"related"},{"name":"importin-alpha export receptor activity","type":"narrow"}],"termid":"GO:0005049","terms_by_termid":{"GO:0005049":null}}


id: PBO:0080813
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"X-ray repair cross complementing 6 pseudogene 3","termid":"PBO:0080813"}


id: GO:0099151
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of postsynaptic density assembly, the aggregation, arrangement and bonding together of a set of components to form a postsynaptic density.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of postsynaptic specialization assembly","termid":"GO:0099150"},{"relation_name":"is_a","term_name":"regulation of excitatory synapse assembly","termid":"GO:1904889"},{"relation_name":"is_a","term_name":"regulation of postsynaptic density organization","termid":"GO:1905874"},{"relation_name":"regulates","term_name":"postsynaptic density assembly","termid":"GO:0097107"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"regulation of postsynaptic density assembly","termid":"GO:0099151"}


id: MONDO:0001528
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A primary or metastatic malignant neoplasm involving the vulva.","definition_xrefs":["NCIT:C7502"],"direct_ancestors":[{"relation_name":"is_a","term_name":"female reproductive organ cancer","termid":"MONDO:0001416"},{"relation_name":"is_a","term_name":"vulvar neoplasm","termid":"MONDO:0021049"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"vulva cancer","secondary_identifiers":["SCTID:363367000","MESH:D014846","DOID:1245","MEDGEN:91196","UMLS:C0375071","ICD9:184.4"],"synonyms":[{"name":"Ca vulva","type":"exact"},{"name":"cancer of mammalian vulva","type":"exact"},{"name":"malignant mammalian vulva neoplasm","type":"exact"},{"name":"malignant neoplasm of mammalian vulva","type":"exact"},{"name":"malignant neoplasm of the vulva","type":"exact"},{"name":"malignant neoplasm of vulva","type":"exact"},{"name":"malignant neoplasm of vulva unspecified","type":"exact"},{"name":"malignant neoplasm of vulva, unspecified","type":"exact"},{"name":"malignant tumor of the vulva","type":"exact"},{"name":"malignant tumor of vulva","type":"exact"},{"name":"malignant tumour of the vulva","type":"exact"},{"name":"malignant tumour of vulva","type":"exact"},{"name":"malignant vulva neoplasm","type":"exact"},{"name":"malignant vulva tumor","type":"exact"},{"name":"malignant vulva tumour","type":"exact"},{"name":"malignant vulvar neoplasm","type":"exact"},{"name":"malignant vulvar tumor","type":"exact"},{"name":"malignant vulvar tumour","type":"exact"},{"name":"mammalian vulva cancer","type":"exact"},{"name":"neoplasm of vulva","type":"broad"},{"name":"vulval cancer","type":"exact"},{"name":"vulval neoplasm","type":"broad"},{"name":"vulvar cancer","type":"exact"},{"name":"vulvar tumour","type":"broad"}],"termid":"MONDO:0001528","xrefs":{"Monarch":{"xref_id":"0001528"}}}


id: GO:1990742
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An extracellular vesicle released from the plasma membrane and ranging in size from about 100 nm to 1000 nm.","definition_xrefs":["PMID:24009894","GOC:vesicles","PMID:22418571","Wikipedia:Microvesicles"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellular vesicle","termid":"GO:1903561"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005576"}],"interesting_parent_ids":["GO:0005575","GO:0005576"],"is_obsolete":false,"name":"microvesicle","synonyms":[{"name":"ectosome","type":"exact"},{"name":"extracellular microvesicle","type":"exact"},{"name":"shedding vesicle","type":"broad"}],"termid":"GO:1990742"}


id: GO:1900930
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of L-tyrosine import into the cell.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of organic acid transport","termid":"GO:0032891"},{"relation_name":"is_a","term_name":"negative regulation of transmembrane transport","termid":"GO:0034763"},{"relation_name":"is_a","term_name":"negative regulation of amino acid transport","termid":"GO:0051956"},{"relation_name":"is_a","term_name":"regulation of L-tyrosine import across plasma membrane","termid":"GO:1900929"},{"relation_name":"negatively_regulates","term_name":"L-tyrosine import across plasma membrane","termid":"GO:1903808"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"negative regulation of L-tyrosine import across plasma membrane","synonyms":[{"name":"down regulation of L-tyrosine import","type":"exact"},{"name":"down regulation of L-tyrosine uptake","type":"related"},{"name":"down-regulation of L-tyrosine import","type":"exact"},{"name":"down-regulation of L-tyrosine uptake","type":"related"},{"name":"downregulation of L-tyrosine import","type":"exact"},{"name":"downregulation of L-tyrosine uptake","type":"related"},{"name":"inhibition of L-tyrosine import","type":"narrow"},{"name":"inhibition of L-tyrosine uptake","type":"related"},{"name":"negative regulation of L-tyrosine import","type":"broad"},{"name":"negative regulation of L-tyrosine uptake","type":"related"}],"termid":"GO:1900930"}


id: GO:2000488
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of brassinosteroid biosynthetic process.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of brassinosteroid biosynthetic process","termid":"GO:0010422"},{"relation_name":"is_a","term_name":"positive regulation of steroid biosynthetic process","termid":"GO:0010893"},{"relation_name":"is_a","term_name":"positive regulation of hormone metabolic process","termid":"GO:0032352"},{"relation_name":"positively_regulates","term_name":"brassinosteroid biosynthetic process","termid":"GO:0016132"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"positive regulation of brassinosteroid biosynthetic process","synonyms":[{"name":"positive regulation of brassinosteroid anabolism","type":"exact"},{"name":"positive regulation of brassinosteroid biosynthesis","type":"exact"},{"name":"positive regulation of brassinosteroid formation","type":"exact"},{"name":"positive regulation of brassinosteroid synthesis","type":"exact"}],"termid":"GO:2000488"}


id: PBO:0029501
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_vegetative_cell_population_after_spore_germination,_abnormal_germ_tube_morphology_(obsolete_FYPO:0002214)","termid":"PBO:0029501"}


id: PBO:0063797
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoglycerate dehydrogenase","termid":"PBO:0063797"}


id: GO:0050086
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-mannitol + NAD+ = D-fructose + NADH.","definition_xrefs":["MetaCyc:MANNITOL-2-DEHYDROGENASE-RXN","EC:1.1.1.67"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"mannitol 2-dehydrogenase activity","secondary_identifiers":["RHEA:12084"],"synonyms":[{"name":"D-mannitol dehydrogenase activity","type":"related"},{"name":"D-mannitol:NAD+ 2-oxidoreductase activity","type":"related"}],"termid":"GO:0050086"}


id: FYPO:0004144
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of catalase activity is decreased during a cellular response to nitrosative stress.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased catalase activity","termid":"FYPO:0003387"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000654","FYPO:0000661","FYPO:0000652","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"decreased catalase activity during cellular response to nitrosative stress","synonyms":[{"name":"decreased catalase activity during nitrosative stress","type":"exact"},{"name":"reduced catalase activity during cellular response to nitrosative stress","type":"exact"}],"termid":"FYPO:0004144"}


id: GO:0005121
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a Toll protein, a transmembrane receptor.","definition_xrefs":["GOC:ceb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor binding","termid":"GO:0005102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"Toll binding","synonyms":[{"name":"Tl binding","type":"exact"},{"name":"Toll ligand","type":"narrow"},{"name":"Toll receptor binding","type":"exact"}],"termid":"GO:0005121"}


id: GO:2000948
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of xyloglucan metabolic process.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell wall macromolecule metabolic process","termid":"GO:0010981"},{"relation_name":"is_a","term_name":"regulation of polysaccharide metabolic process","termid":"GO:0032881"},{"relation_name":"regulates","term_name":"xyloglucan metabolic process","termid":"GO:0010411"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"regulation of xyloglucan metabolic process","synonyms":[{"name":"regulation of xyloglucan metabolism","type":"exact"}],"termid":"GO:2000948"}


id: PR:Q9P3B1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC1565.02c gene.","definition_xrefs":["UniProtKB:Q9P3B1","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rho GTPase-activating protein C1565.02c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1565.02c","synonyms":[{"name":"Spom972h-SPAC1565.02c","type":"exact"}],"termid":"PR:Q9P3B1"}


id: GO:1900358
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of nigerotriose transport.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of transport","termid":"GO:0051051"},{"relation_name":"is_a","term_name":"regulation of nigerotriose transport","termid":"GO:1900357"},{"relation_name":"negatively_regulates","term_name":"nigerotriose transport","termid":"GO:2001091"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"negative regulation of nigerotriose transport","synonyms":[{"name":"down regulation of nigerotriose transport","type":"exact"},{"name":"down-regulation of nigerotriose transport","type":"exact"},{"name":"downregulation of nigerotriose transport","type":"exact"},{"name":"inhibition of nigerotriose transport","type":"narrow"}],"termid":"GO:1900358"}


id: PBO:0062082
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily A member 13 pseudogene","termid":"PBO:0062082"}


id: PBO:0040287
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase Na+/K+ transporting subunit beta 2","termid":"PBO:0040287"}


id: GO:0048493
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A complex, located in the plasma membrane-derived thylakoid, containing either both large and small subunits or just small subunits. It carries out the activity of producing 3-phosphoglycerate from carbon dioxide and ribulose-1,5-bisphosphate.","definition_xrefs":["GOC:mtg_sensu","GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromatophore ribulose bisphosphate carboxylase complex","termid":"GO:0048494"},{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"},{"relation_name":"part_of","term_name":"bacterial thylakoid","termid":"GO:0030075"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005886","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"plasma membrane-derived thylakoid ribulose bisphosphate carboxylase complex","synonyms":[{"name":"RubisCO complex","type":"broad"},{"name":"plasma membrane ribulose bisphosphate carboxylase complex","type":"exact"},{"name":"ribulose bisphosphate carboxylase complex","type":"broad"}],"termid":"GO:0048493"}


id: GO:0009553
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the embryo sac over time, from its formation to the mature structure. The process begins with the meiosis of the megasporocyte to form four haploid megaspores. Three of the megaspores disintegrate, and the fourth undergoes mitosis giving rise to a binucleate syncytial embryo sac. The two haploid nuclei migrate to the opposite poles of the embryo sac and then undergo two rounds of mitosis generating four haploid nuclei at each pole. One nucleus from each set of four migrates to the center of the cell. Cellularization occurs, resulting in an eight-nucleate seven-celled structure. This structure contains two synergid cells and an egg cell at the micropylar end, and three antipodal cells at the other end. A binucleate endosperm mother cell is formed at the center. The two polar nuclei fuse resulting in a mononucleate diploid endosperm mother cell. The three antipodal cells degenerate.","definition_xrefs":["GOC:mtg_plant","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gametophyte development","termid":"GO:0048229"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"embryo sac development","secondary_identifiers":["GO:0048230"],"synonyms":[{"name":"female gametophyte development","type":"exact"}],"termid":"GO:0009553"}


id: PBO:0002527
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyridoxal reductase Plr1","termid":"PBO:0002527"}


id: GO:2001253
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of histone H3-K36 trimethylation.","definition_xrefs":["PMID:17948059"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of histone H3-K36 trimethylation (obsolete GO:2001253)","termid":"GO:2001253"}


id: PBO:0041690
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcitonin pseudogene","termid":"PBO:0041690"}


id: GO:1904505
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of telomere maintenance in response to DNA damage.","definition_xrefs":["PMID:22579284","GOC:BHF","GOC:BHF_telomere","GOC:nc","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of telomere maintenance","termid":"GO:0032204"},{"relation_name":"is_a","term_name":"regulation of cellular response to stress","termid":"GO:0080135"},{"relation_name":"regulates","term_name":"telomere maintenance in response to DNA damage","termid":"GO:0043247"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0032200"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006259","GO:0032200"],"is_obsolete":false,"name":"regulation of telomere maintenance in response to DNA damage","synonyms":[{"name":"regulation of DNA damage response, telomere maintenance","type":"exact"}],"termid":"GO:1904505"}


id: MONDO:0033483
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any familial polycythemia in which the cause of the disease is a mutation in the EPO gene.","definition_xrefs":["MONDO:design_pattern"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial polycythemia","termid":"MONDO:0001115"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"erythrocytosis, familial, 5","secondary_identifiers":["MEDGEN:1638941","DOID:0080290","OMIM:617907","UMLS:C4693552"],"synonyms":[{"name":"ECYT5","type":"related"},{"name":"EPO familial polycythemia","type":"exact"},{"name":"erythrocytosis, familial, 5","type":"exact"},{"name":"familial erythrocytosis 5","type":"related"},{"name":"familial polycythemia caused by mutation in EPO","type":"exact"}],"termid":"MONDO:0033483","xrefs":{"Monarch":{"xref_id":"0033483"}}}


id: GO:1900229
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of single-species biofilm formation in or on host organism.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of single-species biofilm formation","termid":"GO:1900191"},{"relation_name":"is_a","term_name":"regulation of single-species biofilm formation in or on host organism","termid":"GO:1900228"},{"relation_name":"negatively_regulates","term_name":"single-species biofilm formation in or on host organism","termid":"GO:0044407"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of single-species biofilm formation in or on host organism","synonyms":[{"name":"down regulation of single-species biofilm formation in or on host organism","type":"exact"},{"name":"down-regulation of single-species biofilm formation in or on host organism","type":"exact"},{"name":"downregulation of single-species biofilm formation in or on host organism","type":"exact"},{"name":"inhibition of single-species biofilm formation in or on host organism","type":"narrow"}],"termid":"GO:1900229"}


id: GO:0004996
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with thyroid-stimulating hormone to initiate a change in cell activity.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor activity","termid":"GO:0004930"},{"relation_name":"is_a","term_name":"protein-hormone receptor activity","termid":"GO:0016500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"thyroid-stimulating hormone receptor activity","secondary_identifiers":["Wikipedia:Thyrotropin_receptor"],"synonyms":[{"name":"TSH receptor activity","type":"exact"},{"name":"thyroid stimulating hormone receptor activity","type":"exact"},{"name":"thyrotropin receptor","type":"exact"}],"termid":"GO:0004996"}


id: GO:0052237
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The movement of a motile cell or organism in response to environmental oxygen within a second organism, where the two organisms are in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete aerotaxis in other organism involved in symbiotic interaction (obsolete GO:0052237)","synonyms":[{"name":"aerotaxis in other organism during symbiotic interaction","type":"related"},{"name":"aerotaxis within other organism during symbiotic interaction","type":"exact"}],"termid":"GO:0052237"}


id: PBO:0073180
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"selenoprotein K pseudogene 2","termid":"PBO:0073180"}


id: PBO:0055882
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LRRC7 antisense RNA 1","termid":"PBO:0055882"}


id: PBO:0031596
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cell_cycle_arrest_in_mitotic_telophase","termid":"PBO:0031596"}


id: PBO:0039337
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alkaline phosphatase, biomineralization associated","termid":"PBO:0039337"}


id: PBO:0086015
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; SWAT-GFP fusion protein localizes to the endoplasmic reticulum and vacuole, while mCherry fusion localizes to the vacuole; member of the seripauperin multigene family encoded mainly in subtelomeric regions","termid":"PBO:0086015"}


id: GO:0140131
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of lymphocyte chemotaxis.","definition_xrefs":["PMID:19255442"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of leukocyte chemotaxis","termid":"GO:0002690"},{"relation_name":"is_a","term_name":"regulation of lymphocyte chemotaxis","termid":"GO:1901623"},{"relation_name":"is_a","term_name":"positive regulation of lymphocyte migration","termid":"GO:2000403"},{"relation_name":"positively_regulates","term_name":"lymphocyte chemotaxis","termid":"GO:0048247"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of lymphocyte chemotaxis","termid":"GO:0140131"}


id: MONDO:0700157
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Oral squamous cell carcinoma that occurs in a dog.","definition_xrefs":["NCIT:C132823"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carcinoma, non-human animal","termid":"MONDO:0700101"},{"relation_name":"is_a","term_name":"digestive system disorder, non-human animal","termid":"MONDO:1011311"},{"relation_name":"is_a","term_name":"mouth disorder, non-human animal","termid":"MONDO:1011333"},{"relation_name":"is_a","term_name":"otorhinolaryngologic disease, non-human animal","termid":"MONDO:1011342"},{"relation_name":"is_a","term_name":"cancer, dog","termid":"MONDO:1012570"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"canine oral squamous cell carcinoma","termid":"MONDO:0700157","xrefs":{"Monarch":{"xref_id":"0700157"}}}


id: PBO:0078341
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Glu (anticodon CTC) 7-1","termid":"PBO:0078341"}


id: PBO:0074504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nuclear RNA activating complex polypeptide 3","termid":"PBO:0074504"}


id: PR:Q9P7K6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC21C3.19 gene.","definition_xrefs":["UniProtKB:Q9P7K6","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SDO1-like protein C21C3.19 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC21C3.19","synonyms":[{"name":"Spom972h-SPBC21C3.19","type":"exact"}],"termid":"PR:Q9P7K6"}


id: FYPO:0005073
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitotic chromosome condensation occurs to a lower extent than normal along the chromosome arms.","definition_xrefs":["PMID:21633354","PomBase:mah","GO:1990892"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased mitotic chromosome condensation","termid":"FYPO:0003286"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000337","FYPO:0000641","FYPO:0000002","FYPO:0001985","FYPO:0000293","FYPO:0005447","FYPO:0000631"],"is_obsolete":false,"name":"decreased mitotic chromosome arm condensation","synonyms":[{"name":"decreased chromosome arm condensation during mitotic cell cycle","type":"related"},{"name":"decreased mitotic chromosome arm chromatin condensation","type":"exact"},{"name":"decreased mitotic chromosome arm condensation during vegetative growth","type":"exact"},{"name":"decreased mitotic chromosome condensation along chromosome arms","type":"exact"},{"name":"reduced mitotic chromosome arm condensation","type":"exact"}],"termid":"FYPO:0005073"}


id: PBO:0054729
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2138","termid":"PBO:0054729"}


id: PBO:0062893
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OXA1L divergent transcript","termid":"PBO:0062893"}


id: PBO:0089182
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COPII-coated vesicle component Hrf1","termid":"PBO:0089182"}


id: PBO:0057198
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 371a","termid":"PBO:0057198"}


id: PBO:0088048
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ubiquitin C-terminal hydrolase; cleaves ubiquitin-protein fusions to generate monomeric ubiquitin; hydrolyzes the peptide bond at the C-terminus of ubiquitin; also the major processing enzyme for the ubiquitin-like protein Rub1p","termid":"PBO:0088048"}


id: PBO:0047501
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FOXF1 adjacent non-coding developmental regulatory RNA","termid":"PBO:0047501"}


id: PBO:0040375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase peripheral stalk subunit d pseudogene 3","termid":"PBO:0040375"}


id: PBO:0116989
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GAL3ST2 antisense RNA 1","termid":"PBO:0116989"}


id: GO:0042337
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The synthesis and deposition of a chitin-based non-cellular, hardened, or membranous secretion from an epithelial sheet, occurring as part of the molting cycle. An example of this is found in Drosophila melanogaster.","definition_xrefs":["GOC:dph","GOC:mtg_sensu","GOC:tb","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chitin-based cuticle development","termid":"GO:0040003"},{"relation_name":"part_of","term_name":"molting cycle, chitin-based cuticle","termid":"GO:0007591"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cuticle development involved in chitin-based cuticle molting cycle","synonyms":[{"name":"chitin-based cuticle development during molting","type":"related"},{"name":"cuticle anabolism during molting","type":"broad"},{"name":"cuticle biosynthetic process during molting","type":"broad"},{"name":"cuticle formation during molting","type":"broad"},{"name":"cuticle synthesis during molting","type":"broad"}],"termid":"GO:0042337"}


id: PR:Q09919
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- fip1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09919"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane iron permease (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1F7.07c","synonyms":[{"name":"Spom972h-fip1","type":"exact"}],"termid":"PR:Q09919"}


id: PBO:0109811
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial outer membrane dislocase Msp1/Yta4","termid":"PBO:0109811"}


id: PBO:0030514
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_paraquat","termid":"PBO:0030514"}


id: GO:0061650
data:
  {"annotated_genes":["SJAG_04573","SJAG_04612","SJAG_05340","SJAG_05022","SJAG_00208","SJAG_00300","SJAG_00293","SJAG_01679","SJAG_00855","SJAG_01018","SJAG_01251","SJAG_00931","SJAG_02082","SJAG_02918","SJAG_01561","SJAG_00604","SJAG_04857"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[93238],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061651"},{"annotations":[79064],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0141046"},{"annotations":[118726],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061654"},{"annotations":[76164,104799],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061656"},{"annotations":[77854,117115,88334,88114,73805,71690,65298,74744,88491,78358,102584,114602],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061631"}]},"cv_name":"molecular_function","definition":"Isoenergetic transfer of a ubiquitin-like protein (ULP) from one protein to another molecule, usually another protein, via the reaction X-SCP + Y = Y-SCP + X, where both the X-SCP and Y-SCP linkages are thioester bonds between the C-terminal amino acid of SCP and a sulfhydryl side group of a cysteine residue.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ubiquitin-like protein transferase activity","termid":"GO:0019787"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00208":null,"SJAG_00293":null,"SJAG_00300":null,"SJAG_00604":null,"SJAG_00855":null,"SJAG_00931":null,"SJAG_01018":null,"SJAG_01251":null,"SJAG_01561":null,"SJAG_01679":null,"SJAG_02082":null,"SJAG_02918":null,"SJAG_04573":null,"SJAG_04612":null,"SJAG_04857":null,"SJAG_05022":null,"SJAG_05340":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0019787"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0140096","GO:0019787","GO:0016740","GO:0016746"],"is_obsolete":false,"name":"ubiquitin-like protein conjugating enzyme activity","references_by_uniquename":{"GO_REF:0000003":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"E2","type":"broad"},{"name":"small conjugating protein conjugating enzyme activity","type":"exact"}],"termid":"GO:0061650","terms_by_termid":{"GO:0061631":null,"GO:0061651":null,"GO:0061654":null,"GO:0061656":null,"GO:0141046":null}}


id: PBO:0076400
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TATA-box binding protein associated factor, RNA polymerase I subunit B","termid":"PBO:0076400"}


id: PBO:0077176
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"talin rod domain containing 1","termid":"PBO:0077176"}


id: PBO:0078118
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha variable 7","termid":"PBO:0078118"}


id: MONDO:0013622
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any inherited bleeding disorder, platelet-type in which the cause of the disease is a mutation in the ITGA2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited bleeding disorder, platelet-type","termid":"MONDO:0000009"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"platelet-type bleeding disorder 9","secondary_identifiers":["DOID:0111045","MEDGEN:481744","Orphanet:98886","GARD:16868","MESH:C566000","OMIM:614200","UMLS:C3280114"],"synonyms":[{"name":"BDPLT9","type":"exact"},{"name":"GP Ia deficiency","type":"exact"},{"name":"ITGA2 inherited bleeding disorder, platelet-type","type":"exact"},{"name":"bleeding diathesis due to integrin alpha2-beta1 deficiency","type":"related"},{"name":"bleeding disorder, platelet-type, 9","type":"related"},{"name":"collagen platelet receptor deficiency","type":"exact"},{"name":"glycoprotein Ia deficiency","type":"exact"},{"name":"inherited bleeding disorder, platelet-type caused by mutation in ITGA2","type":"exact"}],"termid":"MONDO:0013622","xrefs":{"Monarch":{"xref_id":"0013622"}}}


id: MONDO:1010729
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any leukocyte adhesion deficiency that occurs in cattle due to a mutation in the ITGB2 gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukocyte adhesion deficiency, non-human animal","termid":"MONDO:1012580"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leukocyte adhesion deficiency, ITGB2-related, cattle","secondary_identifiers":["OMIA:000595-9913"],"synonyms":[{"name":"BLAD","type":"exact"},{"name":"bovine leukocyte adhesion deficiency","type":"exact"},{"name":"leukocyte adhesion deficiency type I, cattle","type":"related"}],"termid":"MONDO:1010729","xrefs":{"Monarch":{"xref_id":"1010729"}}}


id: MONDO:0001441
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An eating disorder characterized by the persistent eating of nonnutritive substances such as clay or soil; this behavior must be inappropriate to the level of the individual's development.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"eating disorder","termid":"MONDO:0005451"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pica disease","secondary_identifiers":["ICD9:307.52","SCTID:14077003","UMLS:C0031873","MEDGEN:45917","NCIT:C92566","DOID:12128","MESH:D010842"],"synonyms":[{"name":"Pica","type":"exact"},{"name":"Pica eating disorder","type":"exact"}],"termid":"MONDO:0001441","xrefs":{"Monarch":{"xref_id":"0001441"}}}


id: FYECO:0000432
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Experiments were performed in rich medium containing galactose as the carbon source, yeast extract and other components. The concentration of galactose is typically around 2%.","definition_xrefs":["PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping rich medium","termid":"FYECO:0000080"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"galactose YE","synonyms":[{"name":"galactose rich medium","type":"broad"}],"termid":"FYECO:0000432"}


id: PBO:0049246
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GRPEL2 antisense RNA 1","termid":"PBO:0049246"}


id: PBO:0088638
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor TFIID complex subunit Taf4","termid":"PBO:0088638"}


id: PBO:0091335
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae PPZ1","termid":"PBO:0091335"}


id: PBO:0114485
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial repliratory complex assembly factro/arginine methyltransferase, human NDUFAF7 ortholog","termid":"PBO:0114485"}


id: PBO:0075022
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 115-33","termid":"PBO:0075022"}


id: PBO:0080503
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wound and keratinocyte migration associated lncRNA 2","termid":"PBO:0080503"}


id: PBO:0031844
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cytoskeleton_morphology_during_vegetative_growth","termid":"PBO:0031844"}


id: MONDO:0023193
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Friedman Goodman syndrome","termid":"MONDO:0023193","xrefs":{"Monarch":{"xref_id":"0023193"}}}


id: MONDO:0017442
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"skeletal dysplasia","termid":"MONDO:0018230"},{"relation_name":"is_a","term_name":"dysostosis","termid":"MONDO:0018234"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"congenital absence of thigh and lower leg with foot present","secondary_identifiers":["ICD9:755.33","GARD:21193","icd11.foundation:1165997650","SCTID:55852007","MEDGEN:539373","UMLS:C0265626","ICD10CM:Q72.1","Orphanet:294977"],"synonyms":[{"name":"Femorotibiofibular intercalary transverse meromelia","type":"exact"}],"termid":"MONDO:0017442","xrefs":{"Monarch":{"xref_id":"0017442"}}}


id: PBO:0030086
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_glutathione","termid":"PBO:0030086"}


id: PBO:0089216
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"recombination mediator Sfr1","termid":"PBO:0089216"}


id: FYPO:0005299
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle checkpoint phenotype in which the mitotic G2 DNA damage checkpoint is normal (i.e. indistinguishable from wild type) when the cell is exposed to ultraviolet light. The mitotic G2 DNA damage checkpoint negatively regulates progression through the G2/M transition of the mitotic cell cycle in response to DNA damage.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal mitotic DNA damage checkpoint during cellular response to UV","termid":"FYPO:0002102"},{"relation_name":"is_a","term_name":"normal mitotic G2 DNA damage checkpoint","termid":"FYPO:0006578"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000298","FYPO:0000631","FYPO:0000257","FYPO:0001312","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"normal mitotic G2 DNA damage checkpoint during cellular response to UV","synonyms":[{"name":"normal G2 DNA damage checkpoint during cellular response to UV during mitotic cell cycle","type":"exact"},{"name":"normal mitotic G2 DNA damage checkpoint activation during cellular response to UV","type":"exact"},{"name":"normal mitotic G2 DNA damage checkpoint during cellular response to UV during vegetative growth","type":"exact"},{"name":"normal mitotic G2 DNA damage checkpoint during cellular response to ultraviolet light","type":"exact"}],"termid":"FYPO:0005299"}


id: MONDO:0018527
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete osteoclastic giant cell tumor of pancreas (obsolete MONDO:0018527)","termid":"MONDO:0018527","xrefs":{"Monarch":{"xref_id":"0018527"}}}


id: PBO:0040816
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BICRA antisense RNA 1","termid":"PBO:0040816"}


id: MONDO:0017124
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Noma is a gangrenous disease that causes severe destruction of the soft and osseous tissues of the face.","definition_xrefs":["Orphanet:2700"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"canker sore","termid":"MONDO:0005318"},{"relation_name":"is_a","term_name":"ulcerative stomatitis","termid":"MONDO:0004848"},{"relation_name":"is_a","term_name":"bacterial infectious disease","termid":"MONDO:0005113"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"noma","secondary_identifiers":["EFO:1001063","MedDRA:10029502","MEDGEN:10366","icd11.foundation:340823130","GARD:4001","SCTID:18116006","UMLS:C0028271","ICD9:528.1","MESH:D009625","NCIT:C34852","DOID:9672"],"synonyms":[{"name":"cancrum oris","type":"exact"},{"name":"gangrenous stomatitis","type":"exact"},{"name":"noma neonatorum","type":"related"},{"name":"oral gangrene","type":"related"},{"name":"oro-facial gangrene","type":"related"},{"name":"oro-facial noma","type":"related"}],"termid":"MONDO:0017124","xrefs":{"Monarch":{"xref_id":"0017124"}}}


id: PBO:0028636
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_fluphenazine","termid":"PBO:0028636"}


id: PBO:0060849
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nei like DNA glycosylase 3","termid":"PBO:0060849"}


id: MONDO:0012917
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"specific language impairment","termid":"MONDO:0000724"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"specific language impairment 4","secondary_identifiers":["MEDGEN:393910","OMIM:612514","UMLS:C2675874","MESH:C567288"],"synonyms":[{"name":"SLI4","type":"exact"},{"name":"specific language impairment 4","type":"exact"}],"termid":"MONDO:0012917","xrefs":{"Monarch":{"xref_id":"0012917"}}}


id: GO:0051123
data:
  {"annotated_genes":["SJAG_03285","SJAG_04274","SJAG_02691","SJAG_01475","SJAG_01523","SJAG_01771","SJAG_02174","SJAG_03900","SJAG_03095","SJAG_00741","SJAG_02458","SJAG_04654","SJAG_00766","SJAG_01808"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[67581,70850,71046,71694,72279,74028,74824,75276,75947,77183,77589,94468],"is_not":false,"summary":null,"term":"GO:0051123"},{"annotations":[79898,90032],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0045899"}]},"cv_name":"biological_process","definition":"The formation of a large multiprotein-DNA complex that self-assembles on gene promoter through the sequential recruitment of the general initiation factors that compose the preinitiation complex (PIC) (which may include TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIIH complexes). The PIC engages RNA polymerase II on its DNA template strand and sparks polymerization of the first few RNA nucleotides of the nascent transcript, of which 8 are base-paired with the DNA template within a DNA bubble. PIC assembly may result in a pause step, which marks the end of the PIC assembly and may be followed by promoter clearance (exact synonym: promoter escape). For RNA polymerase II PIC assembly is preceded by the formation of a nucleosome-free region that allows the transcription machinery to access the promoter DNA.","definition_xrefs":["PMID:31300188","GOC:txnOH","PMID:15020047"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription preinitiation complex assembly","termid":"GO:0070897"},{"relation_name":"part_of","term_name":"transcription initiation at RNA polymerase II promoter","termid":"GO:0006367"}],"gene_count":14,"genes_by_uniquename":{"SJAG_00741":null,"SJAG_00766":null,"SJAG_01475":null,"SJAG_01523":null,"SJAG_01771":null,"SJAG_01808":null,"SJAG_02174":null,"SJAG_02458":null,"SJAG_02691":null,"SJAG_03095":null,"SJAG_03285":null,"SJAG_03900":null,"SJAG_04274":null,"SJAG_04654":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0006351"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0065003","GO:0010467","GO:0008150","GO:0006351","GO:0044085"],"is_obsolete":false,"name":"RNA polymerase II preinitiation complex assembly","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"RNA polymerase II transcription PIC biosynthesis","type":"exact"},{"name":"RNA polymerase II transcription PIC formation","type":"exact"},{"name":"RNA polymerase II transcriptional preinitiation complex assembly","type":"exact"},{"name":"RNA polymerase II transcriptional preinitiation complex formation","type":"exact"}],"termid":"GO:0051123","terms_by_termid":{"GO:0045899":null,"GO:0051123":null}}


id: PBO:0002323
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6.1.1.10","termid":"PBO:0002323"}


id: PBO:0085735
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in threonylcarbamoyl adenosine biosynthesis; Sua5p and Qri7p are necessary and sufficient for RNA t6A modification in vitro; null mutant lacks N6-threonylcarbamoyl adenosine (t6A) modification in the anticodon loop of ANN-decoding tRNA; member of conserved YrdC/Sua5 family; binds single-stranded telomeric DNA and null mutant has abnormal telomere length","termid":"PBO:0085735"}


id: MONDO:0004454
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A congenital mesoblastic nephroma characterized by increased cellularity, sheet-like proliferation of fibroblastic cells, and increased mitotic activity. Necrotic changes are commonly present.","definition_xrefs":["NCIT:C39815"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital mesoblastic nephroma","termid":"MONDO:0017043"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0005240","MONDO:0004992"],"is_obsolete":false,"name":"cellular congenital mesoblastic nephroma","secondary_identifiers":["UMLS:C1320471","DOID:8082","MEDGEN:729112"],"synonyms":[{"name":"cellular congenital mesoblastic nephroma","type":"exact"}],"termid":"MONDO:0004454","xrefs":{"Monarch":{"xref_id":"0004454"}}}


id: GO:2001282
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of the directed movement of a muscle cell towards a tendon cell in response to an external stimulus. For example, when the muscle cell arrives at the target tendon cell, migration is arrested so that attachments can be made between the cells.","definition_xrefs":["GOC:sart","PMID:20404543","PMID:19793885"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell migration","termid":"GO:0030336"},{"relation_name":"is_a","term_name":"negative regulation of chemotaxis","termid":"GO:0050922"},{"relation_name":"is_a","term_name":"regulation of muscle cell chemotaxis toward tendon cell","termid":"GO:2001281"},{"relation_name":"negatively_regulates","term_name":"muscle cell chemotaxis toward tendon cell","termid":"GO:0036061"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of muscle cell chemotaxis toward tendon cell","synonyms":[{"name":"arrest of muscle cell chemotaxis","type":"narrow"},{"name":"negative regulation of muscle cell attraction","type":"related"},{"name":"negative regulation of muscle cell chemotaxis towards tendon cell","type":"exact"}],"termid":"GO:2001282"}


id: FYPO:0003647
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of sorbose into the cell occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal transport during vegetative growth","termid":"FYPO:0005973"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"decreased sorbose import","synonyms":[{"name":"decreased sorbose import across plasma membrane","type":"exact"},{"name":"decreased sorbose import during mitotic cell cycle","type":"related"},{"name":"decreased sorbose import during vegetative growth","type":"exact"},{"name":"decreased sorbose import into cell","type":"exact"},{"name":"decreased sorbose uptake","type":"exact"},{"name":"reduced sorbose import","type":"exact"}],"termid":"FYPO:0003647"}


id: PBO:0004044
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA repair protein Rad60","termid":"PBO:0004044"}


id: GO:0021914
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of smoothened signaling that is involved in the patterns of cell differentiation in the ventral spinal cord.","definition_xrefs":["GOC:cls","GOC:dgh","GOC:dph","GOC:jid","GOC:tb","PMID:11262869","GO_REF:0000021"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of smoothened signaling pathway","termid":"GO:0045879"},{"relation_name":"negatively_regulates","term_name":"smoothened signaling pathway involved in ventral spinal cord patterning","termid":"GO:0021910"},{"relation_name":"part_of","term_name":"spinal cord dorsal/ventral patterning","termid":"GO:0021513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning","synonyms":[{"name":"down regulation of smoothened signaling pathway in ventral spinal cord patterning","type":"exact"},{"name":"down-regulation of smoothened signaling pathway in ventral spinal cord patterning","type":"exact"},{"name":"downregulation of smoothened signaling pathway in ventral spinal cord patterning","type":"exact"},{"name":"inhibition of smoothened signaling pathway in ventral spinal cord patterning","type":"narrow"},{"name":"negative regulation of hedgehog signaling pathway involved in ventral spinal cord patterning","type":"exact"},{"name":"negative regulation of hh signaling pathway involved in ventral spinal cord patterning","type":"exact"},{"name":"negative regulation of smoothened signalling pathway in ventral spinal cord patterning","type":"exact"}],"termid":"GO:0021914"}


id: GO:0010234
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell becomes capable of differentiating autonomously into a tapetal cell of anthers in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed.","definition_xrefs":["GOC:mg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell fate specification","termid":"GO:0001708"},{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"part_of","term_name":"anther wall tapetum cell differentiation","termid":"GO:0048657"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anther wall tapetum cell fate specification","synonyms":[{"name":"tapetal cell fate specification","type":"broad"}],"termid":"GO:0010234"}


id: PBO:0030256
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_H3-K9_acetylation","termid":"PBO:0030256"}


id: MONDO:1010019
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Arrhythmogenic right ventricular cardiomyopathy that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiomyopathy, non-human animal","termid":"MONDO:1010010"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arrhythmogenic right ventricular cardiomyopathy, non-human animal","secondary_identifiers":["OMIA:000878"],"termid":"MONDO:1010019","xrefs":{"Monarch":{"xref_id":"1010019"}}}


id: MONDO:0004758
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A localized defect in the visual field bordered by an area of normal vision. This occurs with a variety of eye diseases (e.g., retinal diseases and glaucoma); optic nerve diseases, and other conditions.","definition_xrefs":["MESH:D012607"],"direct_ancestors":[{"relation_name":"is_a","term_name":"eye disorder","termid":"MONDO:0005328"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"scotoma","secondary_identifiers":["ICD9:368.43","UMLS:C0036454","ICD9:368.42","HP:0000575","ICD9:368.44","ICD9:368.45","MEDGEN:19902","DOID:9335"],"synonyms":[{"name":"blind spot area scotoma","type":"exact"},{"name":"enlarged angioscotoma","type":"exact"},{"name":"enlarged blind spot","type":"exact"},{"name":"enlarged paracaecal scotoma","type":"exact"},{"name":"generalised visual field contraction or constriction","type":"exact"},{"name":"generalized visual field contraction or constriction","type":"exact"},{"name":"scotoma","type":"exact"},{"name":"scotoma (disease)","type":"exact"},{"name":"scotoma of blind spot area","type":"exact"},{"name":"sector or arcuate visual field defects","type":"exact"}],"termid":"MONDO:0004758","xrefs":{"Monarch":{"xref_id":"0004758"}}}


id: PR:O13761
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC17A2.11 gene.","definition_xrefs":["UniProtKB:O13761","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C17A2.11, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17A2.11","synonyms":[{"name":"Spom972h-SPAC17A2.11","type":"exact"}],"termid":"PR:O13761"}


id: PATO:0000139
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000139 relative orientation (obsolete PATO:0000139)","termid":"PATO:0000139"}


id: MONDO:0009504
data:
  {"annotated_genes":["SJAG_01524"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87542],"is_not":false,"summary":null,"term":"MONDO:0009504"}]},"cv_name":"mondo","definition":"Fatal infantile lactic acidosis with methylmalonic aciduria is a rare neurometabolic disease characterized by infantile onset of severe encephalomyopathy, lactic acidosis and elevated methylmalonic acid urinary excretion. Clinically it manifests with severe psychomotor delay, hypotonia, failure to thrive, feeding difficulties and dystonia. Epilepsy and multiple congenital anomalies may be associated.","definition_xrefs":["Orphanet:17"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lactic acidosis","termid":"MONDO:0006040"},{"relation_name":"is_a","term_name":"mitochondrial DNA depletion syndrome, encephalomyopathic form","termid":"MONDO:0016796"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01524":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004069"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004069"],"is_obsolete":false,"name":"mitochondrial DNA depletion syndrome 9","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C3151476","DOID:0080128","SCTID:715338007","MESH:C566885","MEDGEN:462826","MESH:C538134","GARD:3163","OMIM:245400"],"synonyms":[{"name":"MTDPS9","type":"related"},{"name":"SUCLG1 mitochondrial DNA depletion syndrome","type":"exact"},{"name":"fatal infantile lactic acidosis with methylmalonic aciduria","type":"related"},{"name":"lactic acidosis congenital infantile","type":"related"},{"name":"lactic acidosis, fatal infantile","type":"related"},{"name":"lactic acidosis, fatal infantile, formerly","type":"related"},{"name":"mitochondrial DNA depletion syndrome 9","type":"exact"},{"name":"mitochondrial DNA depletion syndrome 9 (encephalomyopathic type with methylmalonic aciduria)","type":"related"},{"name":"mitochondrial DNA depletion syndrome caused by mutation in SUCLG1","type":"exact"},{"name":"mitochondrial DNA depletion syndrome type 9","type":"exact"},{"name":"succinate-CoA ligase deficiency","type":"broad"}],"termid":"MONDO:0009504","terms_by_termid":{"MONDO:0009504":null},"xrefs":{"Monarch":{"xref_id":"0009504"}}}


id: GO:0019524
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of keto-D-gluconate, the anion of keto-D-gluconic acid, an aldonic acid derived from glucose.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"keto-D-gluconate metabolic process","termid":"GO:0019525"},{"relation_name":"is_a","term_name":"ketogluconate catabolic process","termid":"GO:0046181"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0005975","GO:0008150"],"is_obsolete":false,"name":"keto-D-gluconate catabolic process","secondary_identifiers":["MetaCyc:DHGLUCONATE-PYR-CAT-PWY"],"synonyms":[{"name":"keto-D-gluconate breakdown","type":"exact"},{"name":"keto-D-gluconate catabolism","type":"exact"},{"name":"keto-D-gluconate degradation","type":"exact"}],"termid":"GO:0019524"}


id: GO:0009503
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A thylakoid membrane complex of chlorophylls a and b together with chlorophyll a-b binding proteins. In addition, LHCs contain a number of other proteins, the function of which is speculative, together with accessory pigments. The LHCs capture and transfer energy to photosystems I and II. An example of this is found in Arabidopsis thaliana.","definition_xrefs":["GOC:mtg_sensu","ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"light-harvesting complex","termid":"GO:0030076"},{"relation_name":"is_a","term_name":"chloroplast thylakoid membrane protein complex","termid":"GO:0098807"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"thylakoid light-harvesting complex","termid":"GO:0009503"}


id: GO:0014747
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of tonic skeletal muscle contraction.","definition_xrefs":["GOC:mtg_muscle","GOC:ef"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of tonic skeletal muscle contraction","termid":"GO:0014746"},{"relation_name":"is_a","term_name":"positive regulation of striated muscle contraction","termid":"GO:0045989"},{"relation_name":"positively_regulates","term_name":"tonic skeletal muscle contraction","termid":"GO:0014720"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of tonic skeletal muscle contraction","termid":"GO:0014747"}


id: PBO:0004937
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1,3-beta-glucan synthase regulatory factor Chf3/Chr4","termid":"PBO:0004937"}


id: GO:0120246
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving an acetylenic compound, any compound which contains a carbon-carbon triple bond (aka C#C).","definition_xrefs":["GOC:krc","DOI:10.1007/978-1-4615-4913-0_3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic process","termid":"GO:0008152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"acetylenic compound metabolic process","synonyms":[{"name":"alkyne substituted compound metabolic process","type":"exact"},{"name":"alkyne substituted compound metabolism","type":"exact"}],"termid":"GO:0120246"}


id: GO:0075045
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of symbiont haustorium formation for nutrient acquisition from host. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of anatomical structure morphogenesis","termid":"GO:0022603"},{"relation_name":"is_a","term_name":"regulation of biological process involved in symbiotic interaction","termid":"GO:0043903"},{"relation_name":"is_a","term_name":"modulation of formation of structure involved in a symbiotic process","termid":"GO:0044145"},{"relation_name":"regulates","term_name":"formation of haustorium for nutrient acquisition","termid":"GO:0052094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of formation by symbiont of haustorium for nutrient acquisition from host","termid":"GO:0075045"}


id: MONDO:0011242
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Bartter syndrome in which the cause of the disease is a mutation in the BSND gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Bartter syndrome type 4","termid":"MONDO:0019524"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"Bartter disease type 4A","secondary_identifiers":["OMIM:602522","MEDGEN:355430","UMLS:C1865270","DOID:0110145","GARD:15348","SCTID:717791000"],"synonyms":[{"name":"BARTS4A","type":"exact"},{"name":"BSND","type":"exact"},{"name":"BSND Bartter syndrome","type":"exact"},{"name":"Bartter disease type 4a","type":"exact"},{"name":"Bartter syndrome caused by mutation in BSND","type":"exact"},{"name":"Bartter syndrome type 4a","type":"exact"},{"name":"Bartter syndrome, infantile, with sensorineural deafness","type":"related"},{"name":"Bartter syndrome, neonatal, with sensorineural deafness","type":"related"},{"name":"Bartter syndrome, type 4A","type":"related"},{"name":"Bartter syndrome, type 4A, neonatal, with sensorineural deafness","type":"related"},{"name":"neonatal Bartter syndrome with sensorineural deafness","type":"exact"},{"name":"sensorineural deafness with mild renal dysfunction","type":"related"}],"termid":"MONDO:0011242","xrefs":{"Monarch":{"xref_id":"0011242"}}}


id: MONDO:0018941
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Furuncular myiasis in humans is caused by two species: the Cayor worm (larvae of the African tumbu fly Cordylobia anthropophaga) and the larvae of the human botfly (Dermatobia hominis).","definition_xrefs":["Orphanet:591"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cutaneous myiasis","termid":"MONDO:0020568"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"furuncular myiasis","secondary_identifiers":["MESH:C538194","UMLS:C2931766","MEDGEN:419893","GARD:2418","icd11.foundation:1861376017"],"synonyms":[{"name":"furunculoid myiasis","type":"exact"},{"name":"furunculous myiasis","type":"exact"}],"termid":"MONDO:0018941","xrefs":{"Monarch":{"xref_id":"0018941"}}}


id: PR:O13986
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- gid5 gene.","definition_xrefs":["UniProtKB:O13986","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C26H5.04 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC26H5.04","synonyms":[{"name":"Spom972h-gid5","type":"exact"}],"termid":"PR:O13986"}


id: MONDO:0002477
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplasm with neuroendocrine differentiation that arises from the prostate gland. This category includes carcinoid tumors and small cell carcinomas.","definition_xrefs":["NCIT:C5545"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuroendocrine neoplasm","termid":"MONDO:0019496"},{"relation_name":"is_a","term_name":"prostate neoplasm","termid":"MONDO:0021259"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostate neuroendocrine neoplasm","secondary_identifiers":["MEDGEN:277537","ONCOTREE:PRNE","DOID:2992","UMLS:C1335515"],"synonyms":[{"name":"neuroendocrine neoplasm of prostate","type":"exact"},{"name":"neuroendocrine neoplasm of prostate gland","type":"exact"},{"name":"neuroendocrine neoplasm of the prostate","type":"exact"},{"name":"neuroendocrine tumor of the prostate","type":"exact"},{"name":"neuroendocrine tumour of the prostate","type":"exact"},{"name":"prostate gland NET","type":"exact"},{"name":"prostate gland neuroendocrine neoplasm","type":"exact"},{"name":"prostate gland neuroendocrine tumor","type":"exact"},{"name":"prostate gland neuroendocrine tumor, well differentiated, low or intermediate grade","type":"exact"},{"name":"prostate gland neuroendocrine tumour","type":"exact"},{"name":"prostate neuroendocrine carcinoma","type":"related"},{"name":"prostate neuroendocrine neoplasm","type":"exact"}],"termid":"MONDO:0002477","xrefs":{"Monarch":{"xref_id":"0002477"}}}


id: RO:0002245
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"g is over-expressed in t iff g is expressed in t, and the expression level of g is increased relative to some background.","direct_ancestors":[{"relation_name":"is_a","term_name":"expressed_in","termid":"RO:0002206"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"over-expressed_in","termid":"RO:0002245"}


id: PBO:0054203
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1583","termid":"PBO:0054203"}


id: PR:Q9HDV9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A glycine cleavage system H protein, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11715:SF0","PRO:DNx","OMA:SCHPO03446"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycine cleavage system H protein, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP19A11.01","secondary_identifiers":["UniProtKB:Q9HDV9"],"synonyms":[{"name":"Spom972h-GCSH","type":"exact"},{"name":"glycine decarboxylase complex subunit H (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9HDV9"}


id: MONDO:0022566
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete BEST1 retinopathy (obsolete MONDO:0022566)","termid":"MONDO:0022566","xrefs":{"Monarch":{"xref_id":"0022566"}}}


id: GO:0004790
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine(1+) + dimethyl sulfide = S-adenosyl-L-homocysteine + trimethylsulfonium.","definition_xrefs":["EC:2.1.1.96","RHEA:19613"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-methyltransferase activity","termid":"GO:0008172"},{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016740","GO:0016741"],"is_obsolete":false,"name":"thioether S-methyltransferase activity","secondary_identifiers":["KEGG_REACTION:R02572","MetaCyc:THIOETHER-S-METHYLTRANSFERASE-RXN"],"synonyms":[{"name":"S-adenosyl-L-methionine:dimethyl-sulfide S-methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:thioether S-methyltransferase activity","type":"related"},{"name":"thioether methyltransferase activity","type":"related"}],"termid":"GO:0004790"}


id: PBO:0075163
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nuclear ribonucleoprotein polypeptide C pseudogene 19","termid":"PBO:0075163"}


id: PBO:0045889
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 gamma pseudogene 1","termid":"PBO:0045889"}


id: MONDO:0007424
data:
  {"annotated_genes":["SJAG_01943","SJAG_00279"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85665,85666],"is_not":false,"summary":null,"term":"MONDO:0007424"}]},"cv_name":"mondo","definition":"Any autosomal dominant nonsyndromic deafness in which the cause of the disease is a mutation in the DIAPH1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant nonsyndromic hearing loss","termid":"MONDO:0019587"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00279":null,"SJAG_01943":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019497"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0019497","MONDO:0000426"],"is_obsolete":false,"name":"autosomal dominant nonsyndromic hearing loss 1","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:124900","MESH:C565121","MEDGEN:343767","DOID:0110541","UMLS:C1852282"],"synonyms":[{"name":"DFNA1","type":"narrow"},{"name":"DIAPH1 autosomal dominant nonsyndromic deafness","type":"narrow"},{"name":"Konigsmark syndrome","type":"exact"},{"name":"LFHL1","type":"exact"},{"name":"autosomal dominant deafness 1","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness 1","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness caused by mutation in DIAPH1","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness type 1","type":"narrow"},{"name":"deafness, autosomal dominant 1","type":"narrow"},{"name":"deafness, autosomal dominant 1, with or without thrombocytopenia","type":"narrow"},{"name":"deafness, autosomal dominant type 1","type":"narrow"},{"name":"deafness, progressive Low tone","type":"narrow"},{"name":"hereditary Low frequency hearing loss","type":"related"},{"name":"hereditary low frequency hearing loss 1","type":"exact"}],"termid":"MONDO:0007424","terms_by_termid":{"MONDO:0007424":null},"xrefs":{"Monarch":{"xref_id":"0007424"}}}


id: GO:0050824
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binding to water (H2O).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete water binding (obsolete GO:0050824)","termid":"GO:0050824"}


id: PBO:0031350
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cell_population_growth_at_low_temperature","termid":"PBO:0031350"}


id: PBO:0013807
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TXcl1 C-terminus","termid":"PBO:0013807"}


id: MONDO:0013624
data:
  {"annotated_genes":["SJAG_03032"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86130],"is_not":false,"summary":null,"term":"MONDO:0013624"}]},"cv_name":"mondo","definition":"Any autosomal recessive non-syndromic intellectual disability in which the cause of the disease is a mutation in the MAN1B1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive non-syndromic intellectual disability","termid":"MONDO:0019502"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03032":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0037792"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0037792","MONDO:0006025"],"is_obsolete":false,"name":"Rafiq syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C3280127","OMIM:614202","MEDGEN:481757","DOID:0081097","GARD:22550"],"synonyms":[{"name":"CDG2U","type":"exact"},{"name":"MAN1B1 autosomal recessive non-syndromic intellectual disability","type":"exact"},{"name":"MRT15","type":"related"},{"name":"RAFQS","type":"exact"},{"name":"autosomal recessive non-syndromic intellectual disability caused by mutation in MAN1B1","type":"exact"},{"name":"intellectual disability, autosomal recessive 15","type":"exact"},{"name":"mental retardation, autosomal recessive 15","type":"exact"},{"name":"mental retardation, autosomal recessive type 15","type":"exact"}],"termid":"MONDO:0013624","terms_by_termid":{"MONDO:0013624":null},"xrefs":{"Monarch":{"xref_id":"0013624"}}}


id: GO:0050290
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + sphingomyelin = ceramide 1-phosphate + choline + H+.","definition_xrefs":["RHEA:20984","EC:3.1.4.41"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipase activity","termid":"GO:0004620"},{"relation_name":"is_a","term_name":"phosphoric diester hydrolase activity","termid":"GO:0008081"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003674","GO:0016788","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"sphingomyelin phosphodiesterase D activity","secondary_identifiers":["MetaCyc:SPHINGOMYELIN-PHOSPHODIESTERASE-D-RXN","KEGG_REACTION:R02542"],"synonyms":[{"name":"sphingomyelin ceramide-phosphohydrolase activity","type":"related"},{"name":"sphingomyelinase D","type":"related"}],"termid":"GO:0050290"}


id: FYPO:0003601
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of any rRNA precursor measured in a cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level during vegetative growth","termid":"FYPO:0001117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0006551","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased rRNA precursor level","synonyms":[{"name":"decreased rRNA precursor accumulation","type":"related"},{"name":"decreased rRNA precursor level during mitotic cell cycle","type":"related"},{"name":"decreased rRNA precursor level during vegetative growth","type":"exact"},{"name":"decreased rRNA precursor transcript level","type":"exact"},{"name":"reduced rRNA precursor level","type":"exact"}],"termid":"FYPO:0003601"}


id: GO:0072666
data:
  {"annotated_genes":["SJAG_03250","SJAG_02584","SJAG_01242","SJAG_02912","SJAG_03892","SJAG_03970","SJAG_03756","SJAG_01367","SJAG_00108","SJAG_01527","SJAG_01229","SJAG_03976","SJAG_00204","SJAG_04489","SJAG_04936","SJAG_04349","SJAG_03783","SJAG_00380","SJAG_01088","SJAG_05210","SJAG_01488","SJAG_01586","SJAG_01360","SJAG_02117","SJAG_05303","SJAG_00416","SJAG_00181","SJAG_01981","SJAG_00208","SJAG_00821","SJAG_03385","SJAG_04552","SJAG_04024","SJAG_01281","SJAG_04912","SJAG_16459"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91825,88443,91960,88330,113639,91392,106083,114778,88408],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0120113"},{"annotations":[91328],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044395"},{"annotations":[73126,75908,80681,78443,96871,77450,71583,74269,77920,77579],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006623"},{"annotations":[98282,88446,91963,73666,71334,96286,73687,115041,78031,71266,106888,109698,91828,78547,72653,88275,101213,78782,72512],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043328"}]},"cv_name":"biological_process","definition":"The directed movement of a protein to a specific location in a vacuole.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment of protein localization to organelle","termid":"GO:0072594"},{"relation_name":"is_a","term_name":"protein localization to vacuole","termid":"GO:0072665"}],"gene_count":36,"genes_by_uniquename":{"SJAG_00108":null,"SJAG_00181":null,"SJAG_00204":null,"SJAG_00208":null,"SJAG_00380":null,"SJAG_00416":null,"SJAG_00821":null,"SJAG_01088":null,"SJAG_01229":null,"SJAG_01242":null,"SJAG_01281":null,"SJAG_01360":null,"SJAG_01367":null,"SJAG_01488":null,"SJAG_01527":null,"SJAG_01586":null,"SJAG_01981":null,"SJAG_02117":null,"SJAG_02584":null,"SJAG_02912":null,"SJAG_03250":null,"SJAG_03385":null,"SJAG_03756":null,"SJAG_03783":null,"SJAG_03892":null,"SJAG_03970":null,"SJAG_03976":null,"SJAG_04024":null,"SJAG_04349":null,"SJAG_04489":null,"SJAG_04552":null,"SJAG_04912":null,"SJAG_04936":null,"SJAG_05210":null,"SJAG_05303":null,"SJAG_16459":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"establishment of protein localization to vacuole","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"establishment of protein localisation to vacuole","type":"exact"}],"termid":"GO:0072666","terms_by_termid":{"GO:0006623":null,"GO:0043328":null,"GO:0044395":null,"GO:0120113":null}}


id: MONDO:0020756
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"familial hemiplegic migraine","termid":"MONDO:0000700"},{"relation_name":"is_a","term_name":"CACNA1A-related complex neurodevelopmental disorder","termid":"MONDO:0100254"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"migraine, familial hemiplegic, 1","secondary_identifiers":["GARD:2638","OMIM:141500","MEDGEN:331388","UMLS:C1832884","DOID:0111181","MESH:C536890"],"synonyms":[{"name":"FHM1","type":"exact"},{"name":"MHP1","type":"exact"},{"name":"familial hemiplegic migraine type 1","type":"exact"},{"name":"hemiplegic migraine, familial type 1","type":"exact"},{"name":"migraine, familial hemiplegic 1, with progressive cerebellar ataxia","type":"exact"},{"name":"migraine, familial hemiplegic, 1","type":"exact"},{"name":"migraine, familial hemiplegic, 1, with progressive cerebellar ataxia","type":"exact"},{"name":"migraine, familial hemiplegic, type 1","type":"exact"},{"name":"migraine, sporadic hemiplegic","type":"exact"}],"termid":"MONDO:0020756","xrefs":{"Monarch":{"xref_id":"0020756"}}}


id: GO:0034181
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of toll-like receptor 13 signaling pathway.","definition_xrefs":["PMID:16551253","GOC:add","PMID:17328678"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of toll-like receptor 13 signaling pathway","termid":"GO:0034179"},{"relation_name":"is_a","term_name":"positive regulation of pattern recognition receptor signaling pathway","termid":"GO:0062208"},{"relation_name":"is_a","term_name":"positive regulation of intracellular signal transduction","termid":"GO:1902533"},{"relation_name":"positively_regulates","term_name":"toll-like receptor 13 signaling pathway","termid":"GO:0034178"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of toll-like receptor 13 signaling pathway","synonyms":[{"name":"positive regulation of TLR13 signaling pathway","type":"exact"},{"name":"positive regulation of toll-like receptor 13 signalling pathway","type":"exact"}],"termid":"GO:0034181"}


id: MONDO:0006296
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete mast cell sarcoma (obsolete MONDO:0006296)","termid":"MONDO:0006296","xrefs":{"Monarch":{"xref_id":"0006296"}}}


id: PomGeneEx:0000023
data:
  {"annotation_feature_type":"gene","cv_name":"PomGeneExProt","definition":"A gene expression qualifier that indicates that a protein is present at the same level under two or more sets of conditions or over a time course.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"constant","termid":"PomGeneEx:0000007"},{"relation_name":"is_a","term_name":"protein expression level","termid":"PomGeneEx:0000010"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein level constant","synonyms":[{"name":"constant protein level","type":"exact"},{"name":"protein expression constant","type":"exact"}],"termid":"PomGeneEx:0000023"}


id: MONDO:0013081
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A condition of decreased or absent presence or activity of IL2-inducible t-cell kinase. Deficiency of this protein is associated with lymphoproliferative syndrome 1, an autosomal recessive primary immunodeficiency characterized by onset in early childhood of Epstein-Barr virus (EBV)-associated immune dysregulation, manifest as lymphoma, lymphomatoid granulomatosis, hemophagocytic lymphohistiocytosis, Hodgkin disease, and/or hypogammaglobulinemia..","definition_xrefs":["NCIT:C126344"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"disease","termid":"MONDO:0000001"},{"relation_name":"excluded_subClassOf","term_name":"obsolete autosomal recessive lymphoproliferative disease (obsolete MONDO:0016536)","termid":"MONDO:0016536"},{"relation_name":"excluded_subClassOf","term_name":"non-SCID combined immunodeficiency","termid":"MONDO:0018814"},{"relation_name":"is_a","term_name":"lymphoproliferative syndrome","termid":"MONDO:0016537"},{"relation_name":"is_a","term_name":"immunodeficiency disease","termid":"MONDO:0021094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"lymphoproliferative syndrome 1","secondary_identifiers":["GARD:17979","MESH:C567815","DOID:0060707","NANDO:2200734","OMIM:613011","UMLS:C3552634","Orphanet:538963","MEDGEN:765548"],"synonyms":[{"name":"ITK deficiency","type":"exact"},{"name":"ITK lymphoproliferative syndrome","type":"exact"},{"name":"LPFS1","type":"exact"},{"name":"lymphoproliferative syndrome 1","type":"exact"},{"name":"lymphoproliferative syndrome caused by mutation in ITK","type":"exact"},{"name":"lymphoproliferative syndrome type 1","type":"exact"}],"termid":"MONDO:0013081","xrefs":{"Monarch":{"xref_id":"0013081"}}}


id: GO:1900659
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of emericellamide biosynthetic process.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of amide metabolic process","termid":"GO:0034249"},{"relation_name":"is_a","term_name":"negative regulation of lipid biosynthetic process","termid":"GO:0051055"},{"relation_name":"is_a","term_name":"negative regulation of small molecule metabolic process","termid":"GO:0062014"},{"relation_name":"is_a","term_name":"negative regulation of secondary metabolite biosynthetic process","termid":"GO:1900377"},{"relation_name":"is_a","term_name":"regulation of emericellamide biosynthetic process","termid":"GO:1900658"},{"relation_name":"negatively_regulates","term_name":"emericellamide biosynthetic process","termid":"GO:1900557"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0019748","GO:0006629"],"is_obsolete":false,"name":"negative regulation of emericellamide biosynthetic process","synonyms":[{"name":"down regulation of emericellamide anabolism","type":"exact"},{"name":"down regulation of emericellamide biosynthesis","type":"exact"},{"name":"down regulation of emericellamide biosynthetic process","type":"exact"},{"name":"down regulation of emericellamide formation","type":"exact"},{"name":"down regulation of emericellamide synthesis","type":"exact"},{"name":"down-regulation of emericellamide anabolism","type":"exact"},{"name":"down-regulation of emericellamide biosynthesis","type":"exact"},{"name":"down-regulation of emericellamide biosynthetic process","type":"exact"},{"name":"down-regulation of emericellamide formation","type":"exact"},{"name":"down-regulation of emericellamide synthesis","type":"exact"},{"name":"downregulation of emericellamide anabolism","type":"exact"},{"name":"downregulation of emericellamide biosynthesis","type":"exact"},{"name":"downregulation of emericellamide biosynthetic process","type":"exact"},{"name":"downregulation of emericellamide formation","type":"exact"},{"name":"downregulation of emericellamide synthesis","type":"exact"},{"name":"inhibition of emericellamide anabolism","type":"exact"},{"name":"inhibition of emericellamide biosynthesis","type":"exact"},{"name":"inhibition of emericellamide biosynthetic process","type":"narrow"},{"name":"inhibition of emericellamide formation","type":"exact"},{"name":"inhibition of emericellamide synthesis","type":"exact"},{"name":"negative regulation of emericellamide anabolism","type":"exact"},{"name":"negative regulation of emericellamide biosynthesis","type":"exact"},{"name":"negative regulation of emericellamide formation","type":"exact"},{"name":"negative regulation of emericellamide synthesis","type":"exact"}],"termid":"GO:1900659"}


id: MONDO:0004544
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A WHO grade II, usually recurring meningioma characterized by the predominance of tissues that are histologically similar to chordoma.","definition_xrefs":["NCIT:C6908"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"clear cell meningioma","termid":"MONDO:0002918"},{"relation_name":"is_a","term_name":"grade II meningioma","termid":"MONDO:0045056"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chordoid meningioma","secondary_identifiers":["ONCOTREE:CHOM","DOID:8368","MEDGEN:235089","UMLS:C1370510"],"synonyms":[{"name":"CHOM","type":"related"},{"name":"chordoid meningioma","type":"exact"},{"name":"meningioma, chordoid","type":"exact"},{"name":"meningioma, chordoid (morphologic abnormality)","type":"exact"}],"termid":"MONDO:0004544","xrefs":{"Monarch":{"xref_id":"0004544"}}}


id: PBO:0071726
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L39 pseudogene 24","termid":"PBO:0071726"}


id: PR:O94613
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An NADPH-dependent diflavin oxidoreductase 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR19384:SF10","PRO:DNx","OMA:SCHPO00283"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADPH-dependent diflavin oxidoreductase 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1296.06","secondary_identifiers":["UniProtKB:O94613"],"synonyms":[{"name":"NADPH-dependent FMN and FAD-containing oxidoreductase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-NDOR1","type":"exact"}],"termid":"PR:O94613"}


id: PBO:0039403
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anaphase promoting complex subunit 4","termid":"PBO:0039403"}


id: PBO:0087914
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcription factor involved in regulating arginine-responsive genes; acts with Arg81p and Arg82p","termid":"PBO:0087914"}


id: PBO:0055390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2820","termid":"PBO:0055390"}


id: PBO:0075194
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nuclear ribonucleoprotein polypeptide G pseudogene 6","termid":"PBO:0075194"}


id: PBO:0049446
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucoside xylosyltransferase 1","termid":"PBO:0049446"}


id: PR:O94390
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- atp7 gene.","definition_xrefs":["UniProtKB:O94390","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase subunit d, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC29A10.13","synonyms":[{"name":"Spom972h-atp7","type":"exact"}],"termid":"PR:O94390"}


id: PBO:0081696
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 619","termid":"PBO:0081696"}


id: PR:O60128
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 40S ribosomal protein S3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11760:SF9","PRO:DNx","OMA:SCHPO04047"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16G5.14c","secondary_identifiers":["UniProtKB:O60128"],"synonyms":[{"name":"Spom972h-RPS3","type":"exact"}],"termid":"PR:O60128"}


id: GO:0047798
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + cyclomaltodextrin = linear maltodextrin.","definition_xrefs":["EC:3.2.1.54","MetaCyc:CYCLOMALTODEXTRINASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0016798","GO:0003824"],"is_obsolete":false,"name":"cyclomaltodextrinase activity","secondary_identifiers":["RHEA:23980"],"synonyms":[{"name":"cyclodextrinase activity","type":"related"},{"name":"cycloheptaglucanase activity","type":"related"},{"name":"cyclohexaglucanase activity","type":"related"},{"name":"cyclomaltodextrin dextrin-hydrolase (decyclizing)","type":"related"}],"termid":"GO:0047798"}


id: GO:1990947
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involved in the progression from anaphase/telophase of meiosis II to the creation of end products of meiosis, in which ploidy is reduced by half.","definition_xrefs":["PMID:21389117"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiotic cell cycle phase transition","termid":"GO:0044771"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"exit from meiosis","synonyms":[{"name":"meiotic exit","type":"exact"}],"termid":"GO:1990947"}


id: GO:0002147
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a glucocorticoid receptor into the nucleus.","definition_xrefs":["GOC:hjd"],"gene_count":0,"genotype_count":0,"name":"obsolete glucocorticoid receptor import into nucleus (obsolete GO:0002147)","synonyms":[{"name":"glucocorticoid receptor nuclear translocation","type":"narrow"}],"termid":"GO:0002147"}


id: GO:0102628
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (+)-costunolide (12,6alpha) + reduced [NADPH-hemoprotein reductase] + dioxygen = 3beta-hydroxycostunolide + oxidized [NADPH-hemoprotein reductase] + H2O.","definition_xrefs":["MetaCyc:RXN-15533"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen","termid":"GO:0016712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"costunolide 3beta-hydroxylase activity","termid":"GO:0102628"}


id: FYPO:0002741
data:
  {"alleles_by_uniquename":{"SJAG_04883:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04883","name":"ptp4delta","uniquename":"SJAG_04883:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[119874],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001007"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which a cell executes a mitotic cell cycle process normally (i.e. indistinguishably from wild type). A mitotic cell cycle process is any of the processes that form part of the mitotic cell cycle, and thereby ensures successive accurate and complete genome replication and chromosome segregation.","definition_xrefs":["GO:1903047","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal mitotic cell cycle","termid":"FYPO:0000411"},{"relation_name":"is_a","term_name":"normal cell cycle process","termid":"FYPO:0006915"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04883":null},"genotype_count":1,"genotypes_by_uniquename":{"ptp4delta":{"display_name":"ptp4delta","display_uniquename":"ptp4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04883:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002","FYPO:0001312","FYPO:0001320"],"is_obsolete":false,"name":"normal mitotic cell cycle process","references_by_uniquename":{"PMID:36695178":null},"single_locus_annotated_genes":["SJAG_04883"],"single_locus_genotype_uniquenames":["ptp4delta"],"termid":"FYPO:0002741","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYPO:0001007":null}}


id: GO:0009670
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: triose-phosphate(out) + phosphate(in) = triose-phosphate(in) + phosphate(out).","definition_xrefs":["GOC:bf","TC:2.A.7.-.-","ISBN:0815340729","GOC:mtg_transport","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organophosphate:phosphate antiporter activity","termid":"GO:0015315"},{"relation_name":"is_a","term_name":"triose-phosphate transmembrane transporter activity","termid":"GO:0071917"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"triose-phosphate:phosphate antiporter activity","secondary_identifiers":["GO:0015122"],"synonyms":[{"name":"TPT","type":"related"},{"name":"dihydroxyacetone phosphate:phosphate antiporter activity","type":"exact"},{"name":"triose phosphate antiporter","type":"exact"},{"name":"triose phosphate translocator","type":"exact"}],"termid":"GO:0009670"}


id: MONDO:0004805
data:
  {"annotated_genes":["SJAG_00222","SJAG_04743","SJAG_00739","SJAG_04810","SJAG_01732","SJAG_02330","SJAG_02528","SJAG_03684","SJAG_02208","SJAG_02453","SJAG_01798","SJAG_01759","SJAG_03889","SJAG_02527","SJAG_03089","SJAG_01960"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86431],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030519"},{"annotations":[85362],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014118"},{"annotations":[86390],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010600"},{"annotations":[86306],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011997"},{"annotations":[85398],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011971"},{"annotations":[86423,86424],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0958013"},{"annotations":[85942],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009953"},{"annotations":[86561],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0957809"},{"annotations":[86421,86420],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0958017"},{"annotations":[87014],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032899"},{"annotations":[86555],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008214"},{"annotations":[87651],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009693"},{"annotations":[87108],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011405"},{"annotations":[86032],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012559"},{"annotations":[87038],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0044208"},{"annotations":[86953],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010294"}]},"cv_name":"mondo","definition":"A disease involving leukocytes.","direct_ancestors":[{"relation_name":"is_a","term_name":"immune system disorder","termid":"MONDO:0005046"},{"relation_name":"is_a","term_name":"hematologic disorder","termid":"MONDO:0005570"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00222":null,"SJAG_00739":null,"SJAG_01732":null,"SJAG_01759":null,"SJAG_01798":null,"SJAG_01960":null,"SJAG_02208":null,"SJAG_02330":null,"SJAG_02453":null,"SJAG_02527":null,"SJAG_02528":null,"SJAG_03089":null,"SJAG_03684":null,"SJAG_03889":null,"SJAG_04743":null,"SJAG_04810":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"leukocyte disorder","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C0023510","MEDGEN:7325","ICD9:288","DOID:9500","SCTID:54097007","ICD9:288.9","MESH:D007960"],"synonyms":[{"name":"disease of leukocyte","type":"exact"},{"name":"disease or disorder of leukocyte","type":"exact"},{"name":"disorder of leukocyte","type":"exact"},{"name":"disorder, leukocyte","type":"exact"},{"name":"disorders, leukocyte","type":"exact"},{"name":"leukocyte disease","type":"exact"},{"name":"leukocyte disease or disorder","type":"exact"},{"name":"leukocyte disorder","type":"exact"},{"name":"white blood cell disorder","type":"exact"}],"termid":"MONDO:0004805","terms_by_termid":{"MONDO:0008214":null,"MONDO:0009693":null,"MONDO:0009953":null,"MONDO:0010294":null,"MONDO:0010600":null,"MONDO:0011405":null,"MONDO:0011971":null,"MONDO:0011997":null,"MONDO:0012559":null,"MONDO:0014118":null,"MONDO:0030519":null,"MONDO:0032899":null,"MONDO:0044208":null,"MONDO:0957809":null,"MONDO:0958013":null,"MONDO:0958017":null},"xrefs":{"Monarch":{"xref_id":"0004805"}}}


id: MONDO:0008183
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Annular pancreas is a distinct form of duodenal atresia in which the head of the pancreas forms a ring around the second portion of the duodenum.","definition_xrefs":["Orphanet:675"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pancreas disorder","termid":"MONDO:0002356"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"annular pancreas","secondary_identifiers":["MESH:C536376","SCTID:40315008","icd11.foundation:1311285827","UMLS:C0149955","GARD:705","DOID:0060850","OMIM:167750","ICD10CM:Q45.1","MEDGEN:56211","MedDRA:10071757","NCIT:C98813"],"synonyms":[{"name":"pancreas, annular","type":"related"}],"termid":"MONDO:0008183","xrefs":{"Monarch":{"xref_id":"0008183"}}}


id: PBO:0087982
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA methyltransferase; catalyzes modification of wobble bases in tRNA anticodons to 2, 5-methoxycarbonylmethyluridine and 5-methoxycarbonylmethyl-2-thiouridine; may act as part of a complex with Trm112p; deletion mutation increases translational infidelity, including amino acid misincorporation and -1 frameshifting, and also confers resistance to zymocin; null mutant displays activation of stress responses","termid":"PBO:0087982"}


id: GO:0047595
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1,4,5,6-tetrahydro-6-oxonicotinate + oxidized ferredoxin = 6-hydroxynicotinate + reduced ferredoxin.","definition_xrefs":["EC:1.3.7.1","MetaCyc:6-HYDROXYNICOTINATE-REDUCTASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor","termid":"GO:0016636"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"6-hydroxynicotinate reductase activity","secondary_identifiers":["RHEA:17225"],"synonyms":[{"name":"1,4,5,6-tetrahydro-6-oxonicotinate:ferredoxin oxidoreductase activity","type":"related"},{"name":"6-hydroxynicotinic reductase activity","type":"related"},{"name":"6-oxo-1,4,5,6-tetrahydronicotinate:ferredoxin oxidoreductase activity","type":"related"},{"name":"6-oxotetrahydro-nicotinate dehydrogenase activity","type":"related"},{"name":"6-oxotetrahydronicotinate dehydrogenase activity","type":"related"},{"name":"HNA reductase activity","type":"related"}],"termid":"GO:0047595"}


id: GO:0031989
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A G protein-coupled receptor signaling pathway initiated by a bombesin binding to its receptor, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor signaling pathway","termid":"GO:0007186"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"bombesin receptor signaling pathway","synonyms":[{"name":"bombesin receptor signalling pathway","type":"exact"}],"termid":"GO:0031989"}


id: PATO:0001022
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A physical quality inhering in a bearer by virtue of the amount of momentum caused a certain force will produce over time.","direct_ancestors":[{"relation_name":"is_a","term_name":"physical quality","termid":"PATO:0001018"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"impulse","termid":"PATO:0001022"}


id: PBO:0041998
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 47","termid":"PBO:0041998"}


id: GO:0033643
data:
  {"annotated_genes":["SJAG_02392"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[119550],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0085039"}]},"cv_name":"cellular_component","definition":"Any constituent part of a host cell. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cellular component","termid":"GO:0018995"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02392":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell part","references_by_uniquename":{"PMID:30726171":null},"termid":"GO:0033643","terms_by_termid":{"GO:0085039":null}}


id: PBO:0057898
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3200","termid":"PBO:0057898"}


id: CHEBI:17515
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-gamma-glutamyl-L-cysteine","termid":"CHEBI:17515"}


id: PBO:0113447
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit l of the mitochondrial F1F0 ATP synthase; F1F0 ATP synthase is a large, evolutionarily conserved enzyme complex required for ATP synthesis; more abundant in the ATP synthase monomer; involved in the calcium-induced permeability transition and calcium homeostasis; does not impact ATP synthase activity and stability; N-terminal region has sequence similarity to Atp19p; conserved in A. gossypii; detected in highly purified mitochondria in high-throughput studies","termid":"PBO:0113447"}


id: PBO:0044119
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CTAGE family member 4","termid":"PBO:0044119"}


id: PBO:0090902
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NuA4 histone acetyltransferase complex subunit Eaf7","termid":"PBO:0090902"}


id: PBO:0068114
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 421","termid":"PBO:0068114"}


id: PATO:0000457
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000457 deviation(from_normal) value (obsolete PATO:0000457)","termid":"PATO:0000457"}


id: MONDO:0001227
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Chronic form of tympanitis.","definition_xrefs":["MONDO:patterns/chronic"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chronic otitis media","termid":"MONDO:0021204"},{"relation_name":"is_a","term_name":"tympanitis","termid":"MONDO:0024616"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chronic tympanitis","secondary_identifiers":["SCTID:89723004","UMLS:C0395849","DOID:11217","ICD9:384.1","MEDGEN:583089"],"synonyms":[{"name":"tympanitis, chronic","type":"exact"}],"termid":"MONDO:0001227","xrefs":{"Monarch":{"xref_id":"0001227"}}}


id: PBO:0084749
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial malic enzyme; catalyzes the oxidative decarboxylation of malate to pyruvate, which is a key intermediate in sugar metabolism and a precursor for synthesis of several amino acids","termid":"PBO:0084749"}


id: MONDO:0011717
data:
  {"annotated_genes":["SJAG_03266"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87146],"is_not":false,"summary":null,"term":"MONDO:0011717"}]},"cv_name":"mondo","definition":"Hyperinsulinism-hyperammonemia syndrome (HIHA) is a frequent form of diazoxide-sensitive diffuse hyperinsulinism, characterized by an excessive/ uncontrolled insulin secretion (inappropriate for the level of glycemia), asymptomatic hyperammonemia and recurrent episodes of profound hypoglycemia induced by fasting and protein rich meals, requiring rapid and intensive treatment to prevent neurological sequelae. Epilepsy and cognitive deficit that are unrelated to hypoglycemia may also occur.","definition_xrefs":["Orphanet:35878"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diazoxide-sensitive diffuse hyperinsulinism","termid":"MONDO:0015624"},{"relation_name":"is_a","term_name":"urea cycle disorder or inherited hyperammonemia","termid":"MONDO:0800153"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03266":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0037792"}],"interesting_parent_ids":["MONDO:0004736","MONDO:0005066","MONDO:0004335","MONDO:0037792"],"is_obsolete":false,"name":"hyperinsulinism-hyperammonemia syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:606762","GARD:9931","MEDGEN:376153","MESH:C538375","UMLS:C1847555","DOID:0070217","NCIT:C131832"],"synonyms":[{"name":"GDH hyperinsulinism","type":"exact"},{"name":"GLUD1 hyperinsulinism","type":"exact"},{"name":"HA/hi syndrome","type":"related"},{"name":"HHF6","type":"related"},{"name":"glutamate dehydrogenase 1 hyperinsulinism","type":"exact"},{"name":"hi/HA syndrome","type":"exact"},{"name":"hyperinsulinemic hypoglycemia familial 6","type":"related"},{"name":"hyperinsulinemic hypoglycemia, familial, 6","type":"related"},{"name":"hyperinsulinemic hypoglycemia, familial, type 6","type":"exact"},{"name":"hyperinsulinism hyperammonemia syndrome","type":"related"},{"name":"hyperinsulinism-hyperammonemia syndrome","type":"exact"},{"name":"hyperinsulinism/hyperammonemia syndrome","type":"exact"}],"termid":"MONDO:0011717","terms_by_termid":{"MONDO:0011717":null},"xrefs":{"Monarch":{"xref_id":"0011717"}}}


id: PBO:0055160
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2579","termid":"PBO:0055160"}


id: PR:Q9UT19
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO00595"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC9.09","secondary_identifiers":["UniProtKB:Q9UT19"],"synonyms":[{"name":"Spom972h-metE","type":"exact"},{"name":"cobalamin-independent methionine synthase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"methionine synthase, vitamin-B12 independent isozyme (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UT19"}


id: _global:characteristic_of_part_of
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"q characteristic of part of w if and only if there exists some p such that q inheres in p and p part of w.","direct_ancestors":[{"relation_name":"is_a","term_name":"depends_on","termid":"_global:depends_on"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"characteristic_of_part_of","secondary_identifiers":["RO:0002314"],"termid":"_global:characteristic_of_part_of"}


id: PBO:0059384
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein S21 pseudogene 9","termid":"PBO:0059384"}


id: PBO:0076050
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stathmin 4","termid":"PBO:0076050"}


id: GO:0097242
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which amyloid-beta is removed from extracellular brain regions by mechanisms involving cell surface receptors.","definition_xrefs":["PMID:26005850","PMID:18289866","PMID:19098903","GOC:aruk","GOC:bc","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal process","termid":"GO:0032501"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"amyloid-beta clearance","synonyms":[{"name":"beta-amyloid clearance","type":"exact"}],"termid":"GO:0097242"}


id: GO:0038203
data:
  {"annotated_genes":["SJAG_01320","SJAG_01020","SJAG_05030","SJAG_00143","SJAG_06588","SJAG_04987","SJAG_00117","SJAG_04460","SJAG_03067","SJAG_04206"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72940,77421,77888,99701,107011,108900],"is_not":false,"summary":null,"term":"GO:0038203"},{"annotations":[116603],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:1903940"},{"annotations":[98070,91518,107319],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1904515"}]},"cv_name":"biological_process","definition":"A series of intracellular molecular signals mediated by TORC2; TOR (rapamycin-insensitive companion of TOR) in complex with at least Rictor (regulatory-associated protein of TOR), or orthologs of, and other signaling components.","definition_xrefs":["GOC:lb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"TOR signaling","termid":"GO:0031929"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00117":null,"SJAG_00143":null,"SJAG_01020":null,"SJAG_01320":null,"SJAG_03067":null,"SJAG_04206":null,"SJAG_04460":null,"SJAG_04987":null,"SJAG_05030":null,"SJAG_06588":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"TORC2 signaling","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"TORC2 signal transduction","type":"exact"}],"termid":"GO:0038203","terms_by_termid":{"GO:0038203":null,"GO:1903940":null,"GO:1904515":null}}


id: PBO:0063053
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"presequence translocase associated motor 16","termid":"PBO:0063053"}


id: MONDO:1011748
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"integumentary system disorder, non-human animal","termid":"MONDO:1011328"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"urticaria pigmentosa, non-human animal","secondary_identifiers":["OMIA:001289"],"termid":"MONDO:1011748","xrefs":{"Monarch":{"xref_id":"1011748"}}}


id: FYPO:0002026
data:
  {"alleles_by_uniquename":{"SJAG_02392:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02392","name":"pom1delta","uniquename":"SJAG_02392:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[119802],"is_not":false,"summary":null,"term":"FYPO:0002026"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell forms an actomyosin contractile ring that is perpendicular to the long axis of the cell, but is not located at the midpoint of the long axis.","definition_xrefs":["PomBase:mah","PMID:8834798"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mislocalized actomyosin contractile ring","termid":"FYPO:0001369"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02392":null},"genotype_count":1,"genotypes_by_uniquename":{"pom1delta":{"display_name":"pom1delta","display_uniquename":"pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0004803"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000032","FYPO:0000631","FYPO:0000138","FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0004803","FYPO:0000002"],"is_obsolete":false,"name":"actomyosin contractile ring displaced from midpoint","references_by_uniquename":{"PMID:25866389":null},"single_locus_annotated_genes":["SJAG_02392"],"single_locus_genotype_uniquenames":["pom1delta"],"synonyms":[{"name":"actomyosin contractile ring displaced from cell center","type":"exact"},{"name":"actomyosin contractile ring displaced from cell centre","type":"exact"},{"name":"actomyosin contractile ring displaced from cell midpoint","type":"exact"},{"name":"actomyosin contractile ring displaced from midpoint during mitotic cell cycle","type":"related"},{"name":"actomyosin contractile ring displaced from midpoint during vegetative growth","type":"exact"},{"name":"cytokinetic contractile ring displaced from midpoint","type":"exact"}],"termid":"FYPO:0002026","terms_by_termid":{"FYECO:0000162":null,"FYPO:0002026":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: MONDO:0001430
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"corneal neovascularization","termid":"MONDO:0006713"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"deep corneal vascularisation","secondary_identifiers":["SCTID:2102007","UMLS:C0155095","ICD9:370.63","MEDGEN:509784","DOID:12087"],"synonyms":[{"name":"deep vascularization of cornea","type":"exact"}],"termid":"MONDO:0001430","xrefs":{"Monarch":{"xref_id":"0001430"}}}


id: PBO:0044624
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"doublecortin domain containing 2B","termid":"PBO:0044624"}


id: PBO:0078713
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Leu (anticodon CAG) 2-1","termid":"PBO:0078713"}


id: MOD:01137
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that is produced by reaction of a lysine residue with 2,2,5,7,8-pentamethylchroman-6-sulfonyl chloride, Pmc chloride, to form N6-(2,2,5,7,8-pentamethylchroman-6-sulfonyl)-L-lysine.","definition_xrefs":["DeltaMass:310"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-arginine residue","termid":"MOD:00902"},{"relation_name":"is_a","term_name":"2,2,5,7,8-pentamethylchroman-6-sulfonyl chloride derivatized residue","termid":"MOD:01120"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N6-(2,2,5,7,8-pentamethylchroman-6-sulfonyl)-L-lysine","synonyms":[{"name":"PMC lysyl","type":"exact"},{"name":"PmcLys","type":"exact"}],"termid":"MOD:01137"}


id: FYPO:0005377
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the hydrolysis of peptide bonds within a protein does not occur. All proteolysis may be affected, or only cleavage of specific proteins, or even specific sites within specific proteins.","definition_xrefs":["PomBase:mah","GO:0006508"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein metabolic process during vegetative growth","termid":"FYPO:0000328"},{"relation_name":"is_a","term_name":"abnormal proteolysis","termid":"FYPO:0005376"},{"relation_name":"is_a","term_name":"abolished biological process","termid":"FYPO:0005448"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0002274"],"is_obsolete":false,"name":"abolished proteolysis during vegetative growth","synonyms":[{"name":"abolished peptidolysis during vegetative growth","type":"exact"},{"name":"abolished protein cleavage during vegetative growth","type":"narrow"},{"name":"abolished proteolysis during mitotic cell cycle","type":"related"},{"name":"proteolysis abolished","type":"exact"}],"termid":"FYPO:0005377"}


id: PBO:0048797
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein subunit alpha q","termid":"PBO:0048797"}


id: GO:0061479
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reverse transcriptase inhibitor stimulus.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to antibiotic","termid":"GO:0046677"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to reverse transcriptase inhibitor","termid":"GO:0061479"}


id: GO:1904935
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cell proliferation in midbrain.","definition_xrefs":["GOC:PARL","GO_REF:0000058","GOC:bf","GOC:TermGenie","PMID:24431302"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell proliferation in midbrain","termid":"GO:1904933"},{"relation_name":"is_a","term_name":"positive regulation of neural precursor cell proliferation","termid":"GO:2000179"},{"relation_name":"positively_regulates","term_name":"cell proliferation in midbrain","termid":"GO:0033278"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cell proliferation in midbrain","synonyms":[{"name":"activation of cell proliferation in mesencephalon","type":"narrow"},{"name":"activation of cell proliferation in midbrain","type":"narrow"},{"name":"activation of mesencepahalic cell proliferation","type":"related"},{"name":"positive regulation of cell proliferation in mesencephalon","type":"exact"},{"name":"positive regulation of mesencepahalic cell proliferation","type":"related"},{"name":"up regulation of cell proliferation in mesencephalon","type":"exact"},{"name":"up regulation of cell proliferation in midbrain","type":"exact"},{"name":"up regulation of mesencepahalic cell proliferation","type":"related"},{"name":"up-regulation of cell proliferation in mesencephalon","type":"exact"},{"name":"up-regulation of cell proliferation in midbrain","type":"exact"},{"name":"up-regulation of mesencepahalic cell proliferation","type":"related"},{"name":"upregulation of cell proliferation in mesencephalon","type":"exact"},{"name":"upregulation of cell proliferation in midbrain","type":"exact"},{"name":"upregulation of mesencepahalic cell proliferation","type":"related"}],"termid":"GO:1904935"}


id: MONDO:1010708
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Eclampsia that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"eclampsia, non-human animal","termid":"MONDO:1010103"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eclampsia, dog","secondary_identifiers":["OMIA:001331-9615"],"termid":"MONDO:1010708","xrefs":{"Monarch":{"xref_id":"1010708"}}}


id: SO:0001691
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A restriction enzyme recognition site that, when cleaved, results in no overhangs.","definition_xrefs":["SBOL:jgquinn","SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"restriction_enzyme_recognition_site","termid":"SO:0001687"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"blunt_end_restriction_enzyme_cleavage_site","synonyms":[{"name":"blunt end restriction enzyme cleavage site","type":"exact"}],"termid":"SO:0001691"}


id: GO:0004750
data:
  {"annotated_genes":["SJAG_00501"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[74066],"is_not":false,"summary":null,"term":"GO:0004750"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: D-ribulose 5-phosphate = D-xylulose 5-phosphate.","definition_xrefs":["EC:5.1.3.1","RHEA:13677"],"direct_ancestors":[{"relation_name":"is_a","term_name":"racemase and epimerase activity, acting on carbohydrates and derivatives","termid":"GO:0016857"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00501":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016853","GO:0003824"],"is_obsolete":false,"name":"D-ribulose-phosphate 3-epimerase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["KEGG_REACTION:R01529","Reactome:R-HSA-199803","Reactome:R-HSA-71303","MetaCyc:RIBULP3EPIM-RXN"],"synonyms":[{"name":"D-ribulose 5-phosphate epimerase activity","type":"related"},{"name":"D-ribulose phosphate-3-epimerase activity","type":"related"},{"name":"D-ribulose-5-P 3-epimerase activity","type":"related"},{"name":"D-ribulose-5-phosphate 3-epimerase activity","type":"related"},{"name":"D-ribulose-5-phosphate epimerase activity","type":"related"},{"name":"D-xylulose-5-phosphate 3-epimerase activity","type":"related"},{"name":"erythrose-4-phosphate epimerase activity","type":"related"},{"name":"erythrose-4-phosphate isomerase activity","type":"related"},{"name":"pentose phosphate epimerase (PPE)","type":"related"},{"name":"pentose-5-phosphate 3-epimerase activity","type":"related"},{"name":"phosphoketopentose 3-epimerase activity","type":"related"},{"name":"phosphoketopentose epimerase activity","type":"related"},{"name":"phosphoribulose epimerase activity","type":"related"},{"name":"ribulose 5-phosphate 3-epimerase activity","type":"related"},{"name":"ribulose-phosphate 3-epimerase activity","type":"related"},{"name":"xylulose phosphate 3-epimerase activity","type":"related"}],"termid":"GO:0004750","terms_by_termid":{"GO:0004750":null}}


id: SO:0000306
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A nucleotide modified by methylation.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified_DNA_base","termid":"SO:0000305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methylated_DNA_base_feature","synonyms":[{"name":"methylated base feature","type":"exact"}],"termid":"SO:0000306"}


id: MONDO:0017361
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An infectious embryofetopathy that may present in an infant as a result of maternal infection and subsequent fetal infection with rubella virus. CRS can lead to deafness, cataract, and variety of other permanent manifestations including cardiac and neurological defects.","definition_xrefs":["Orphanet:290"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rubella","termid":"MONDO:0004656"},{"relation_name":"is_a","term_name":"infectious embryofetopathy","termid":"MONDO:0016511"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital rubella syndrome","secondary_identifiers":["UMLS:C0035921","icd11.foundation:1059053724","MEDGEN:19841","NCIT:C34992","GARD:4744","NORD:1681","SCTID:1857005","ICD10CM:P35.0","EFO:0007218","MESH:D012410","NANDO:2200890","ICD9:771.0","MedDRA:10010618"],"synonyms":[{"name":"CRS","type":"exact"},{"name":"Rubella, Congenital","type":"exact"},{"name":"congenital rubella","type":"exact"},{"name":"congenital rubella syndrome","type":"exact"},{"name":"fetal rubella syndrome","type":"exact"},{"name":"foetal rubella syndrome","type":"exact"},{"name":"mother-to-child transmission of rubella syndrome","type":"exact"},{"name":"rubella congenital","type":"exact"}],"termid":"MONDO:0017361","xrefs":{"Monarch":{"xref_id":"0017361"}}}


id: FYPO:0004116
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce an inviable cell that does not divide, and that has a diameter larger than normal only near the middle of the cell, around the nucleus.","definition_xrefs":["PMID:15116432","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable after spore germination, without cell division","termid":"FYPO:0001991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000004","FYPO:0001320"],"is_obsolete":false,"name":"inviable after spore germination, without cell division, cell enlarged around nucleus","synonyms":[{"name":"inviable after spore germination, undivided cell, cell enlarged around nucleus","type":"exact"},{"name":"inviable following spore germination, without cell division, cell enlarged around nucleus","type":"exact"},{"name":"inviable germinated spore, without cell division, cell enlarged around nucleus","type":"exact"},{"name":"lethal after spore germination, without cell division, cell enlarged around nucleus","type":"exact"}],"termid":"FYPO:0004116"}


id: MONDO:0003395
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare sex cord-stromal tumor that arises from the testis. It is characterized by the presence of granulosa-like cells and Call-Exner bodies. There are two variants described, the adult and the juvenile.","definition_xrefs":["NCIT:C6357"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"benign female reproductive system neoplasm","termid":"MONDO:0000624"},{"relation_name":"is_a","term_name":"testicular sex cord-stromal neoplasm","termid":"MONDO:0003125"},{"relation_name":"is_a","term_name":"granulosa cell tumor","termid":"MONDO:0006036"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testicular granulosa cell tumor","secondary_identifiers":["MEDGEN:237001","UMLS:C1336709","DOID:5331"],"synonyms":[{"name":"granulosa cell neoplasm of testis","type":"related"},{"name":"granulosa cell neoplasm of the testis","type":"related"},{"name":"granulosa cell tumor of testis","type":"exact"},{"name":"granulosa cell tumor of the testis","type":"related"},{"name":"granulosa cell tumour of testis","type":"exact"},{"name":"granulosa cell tumour of the testis","type":"related"},{"name":"testicular granulosa cell neoplasm","type":"related"},{"name":"testicular granulosa cell tumor","type":"exact"},{"name":"testis granulosa cell tumor","type":"exact"},{"name":"testis granulosa cell tumour","type":"exact"}],"termid":"MONDO:0003395","xrefs":{"Monarch":{"xref_id":"0003395"}}}


id: PR:Q9UUF7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A coatomer subunit beta that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02682","PANTHER:PTHR10635:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coatomer subunit beta (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC146.14c","secondary_identifiers":["UniProtKB:Q9UUF7"],"synonyms":[{"name":"Spom972h-COPB1","type":"exact"},{"name":"beta-COP (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"beta-coat protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UUF7"}


id: GO:0051355
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events contributing to equilibrioception by which an organism senses the position, location, orientation, and movement of the body and its parts. Proprioception plays an important role in the ability of an organism to perceive its orientation with respect to gravity.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proprioception","termid":"GO:0019230"},{"relation_name":"part_of","term_name":"equilibrioception","termid":"GO:0050957"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"proprioception involved in equilibrioception","synonyms":[{"name":"equilibrioception by proprioception","type":"exact"},{"name":"perception of orientation with respect to gravity by proprioception","type":"exact"},{"name":"proprioception during equilibrioception","type":"related"}],"termid":"GO:0051355"}


id: PBO:0075161
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nuclear ribonucleoprotein polypeptide C pseudogene 17","termid":"PBO:0075161"}


id: PR:O13641
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC8D2.16c gene.","definition_xrefs":["UniProtKB:O13641","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methyltransferase SPBC8D2.16c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC8D2.16c","synonyms":[{"name":"Spom972h-SPBC8D2.16c","type":"exact"}],"termid":"PR:O13641"}


id: MONDO:0006346
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An adenocarcinoma arising from the pancreas. It is characterized by the presence of relatively uniform malignant cells which form acinar patterns. It usually occurs during adulthood. Signs and symptoms include abdominal pain, weight loss, nausea, and diarrhea. It may metastasize to regional lymph nodes and the liver. A minority of patients develop lipase hypersecretion syndrome. This syndrome may be seen in patients with liver metastases and it is characterized by excessive secretion of lipase in the serum, polyarthralgia, and subcutaneous fat necrosis.","definition_xrefs":["NCIT:C7977"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acinar cell carcinoma","termid":"MONDO:0004965"},{"relation_name":"is_a","term_name":"pancreatic adenocarcinoma","termid":"MONDO:0006047"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992"],"is_obsolete":false,"name":"pancreatic acinar cell carcinoma","secondary_identifiers":["EFO:1000439","ONCOTREE:PAAC","DOID:5742","MEDGEN:83540","GARD:21777","Orphanet:424046","UMLS:C0279661"],"synonyms":[{"name":"PAAC","type":"related"},{"name":"Pancreatic acinar cell cancer","type":"exact"},{"name":"acinar cell adenocarcinoma of pancreas","type":"exact"},{"name":"acinar cell adenocarcinoma of the pancreas","type":"exact"},{"name":"acinar cell carcinoma of pancreas","type":"exact"},{"name":"acinar cell carcinoma of the pancreas","type":"exact"},{"name":"carcinoma of pancreatic acinar cell","type":"exact"},{"name":"pancreas acinar cell adenocarcinoma","type":"exact"},{"name":"pancreatic acinar cell adenocarcinoma","type":"exact"},{"name":"pancreatic acinar cell carcinoma","type":"exact"}],"termid":"MONDO:0006346","xrefs":{"Monarch":{"xref_id":"0006346"}}}


id: MONDO:0032905
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary spastic paraplegia","termid":"MONDO:0019064"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"spastic paraplegia 81, autosomal recessive","secondary_identifiers":["UMLS:C5394033","MEDGEN:1711668","OMIM:618768"],"synonyms":[{"name":"SPASTIC PARAPLEGIA 81, AUTOSOMAL RECESSIVE","type":"related"},{"name":"SPG81","type":"related"}],"termid":"MONDO:0032905","xrefs":{"Monarch":{"xref_id":"0032905"}}}


id: GO:0031922
data:
  {"annotated_genes":["SJAG_03652","SJAG_03808","SJAG_02962","SJAG_02152"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[117799,90466,119082,90465],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903091"}]},"cv_name":"biological_process","definition":"The directed movement of pyridoxamine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Pyridoxamine, 4-(aminomethyl)-5-(hydroxymethyl)-2-methylpyridin-3-ol, is one of the vitamin B6 compounds. Pyridoxal, pyridoxamine and pyridoxine are collectively known as vitamin B6, and are efficiently converted to the biologically active form of vitamin B6, pyridoxal phosphate.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic cation transport","termid":"GO:0015695"},{"relation_name":"is_a","term_name":"organic hydroxy compound transport","termid":"GO:0015850"},{"relation_name":"is_a","term_name":"vitamin B6 transport","termid":"GO:0031919"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02152":null,"SJAG_02962":null,"SJAG_03652":null,"SJAG_03808":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"pyridoxamine transport","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0031922","terms_by_termid":{"GO:1903091":null}}


id: GO:0002649
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of tolerance induction to self antigen.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of tolerance induction","termid":"GO:0002643"},{"relation_name":"regulates","term_name":"tolerance induction to self antigen","termid":"GO:0002513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of tolerance induction to self antigen","termid":"GO:0002649"}


id: PBO:0043975
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chondrosarcoma associated gene 1","termid":"PBO:0043975"}


id: PR:Q9C115
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rec25 gene.","definition_xrefs":["UniProtKB:Q9C115","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic recombination protein rec25 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17A5.18c","synonyms":[{"name":"Spom972h-rec25","type":"exact"},{"name":"meiotically up-regulated gene 19 protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9C115"}


id: GO:0060819
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Compensating for the two-fold variation in X-chromosome:autosome ratios between sexes by a global inactivation of all, or most of, the genes on one of the X-chromosomes in the XX sex by genomic imprinting.","definition_xrefs":["GOC:dph","GOC:tb","GOC:sdb_2009"],"gene_count":0,"genotype_count":0,"name":"obsolete inactivation of X chromosome by genomic imprinting (obsolete GO:0060819)","synonyms":[{"name":"inactivation of X chromosome by genetic imprinting","type":"related"}],"termid":"GO:0060819"}


id: GO:0018607
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 1-indanone + NADPH + 1/2 O2 = NADP+ + 3,4-dihydrocoumarin.","definition_xrefs":["UM-BBD_reactionID:r0417"],"gene_count":0,"genotype_count":0,"name":"obsolete 1-indanone monooxygenase activity (obsolete GO:0018607)","termid":"GO:0018607"}


id: FYPO:0000343
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which the concentration of hydrogen sulfide released into the growth medium by cells is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased concentration of substance in growth medium","termid":"FYPO:0000800"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001155"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001155","FYPO:0001985"],"is_obsolete":false,"name":"increased concentration of hydrogen sulfide in growth medium","synonyms":[{"name":"increased concentration of H2S in growth medium","type":"exact"},{"name":"increased hydrogen sulfide biosynthesis","type":"related"}],"termid":"FYPO:0000343"}


id: PBO:0053191
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lncRNA negative regulator of fibroblast-like synoviocyte migration, SYNCRIP interacting","termid":"PBO:0053191"}


id: PBO:0057099
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIR193b-365a host gene","termid":"PBO:0057099"}


id: PBO:0081996
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger and SCAN domain containing 29","termid":"PBO:0081996"}


id: PBO:0036164
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-mitotic_spindle_elongation_without_chromosome_separation_with_centromeric_DNA_associated_with_spindle","termid":"PBO:0036164"}


id: PBO:0012000
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WIP family cytoskeletal protein (predicted)","termid":"PBO:0012000"}


id: PBO:0044837
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defensin beta 125","termid":"PBO:0044837"}


id: PBO:0075662
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spectrin beta, non-erythrocytic 2","termid":"PBO:0075662"}


id: PBO:0005357
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CaCA proton/calcium exchanger (predicted)","termid":"PBO:0005357"}


id: MONDO:0044241
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete mydriatic response to pharmacologic agents (obsolete MONDO:0044241)","secondary_identifiers":["OMIM:159410"],"synonyms":[{"name":"mydriatic response to pharmacologic agents","type":"related"}],"termid":"MONDO:0044241","xrefs":{"Monarch":{"xref_id":"0044241"}}}


id: GO:0043860
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the ATP-dependent polymerization of arginine and aspartate to multi-L-arginyl-poly-L-aspartic acid (cyanophycin; a water-insoluble reserve polymer).","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-amino acid ligase activity","termid":"GO:0016881"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016874","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"cyanophycin synthetase activity","synonyms":[{"name":"cphA","type":"related"}],"termid":"GO:0043860"}


id: MONDO:1011092
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hypospadias that occurs in horse.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hypospadias, non-human animal","termid":"MONDO:1010269"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypospadias, horse","secondary_identifiers":["OMIA:001187-9796"],"termid":"MONDO:1011092","xrefs":{"Monarch":{"xref_id":"1011092"}}}


id: PBO:0030958
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H3-K9_dimethylation_at_centromere_outer_repeat","termid":"PBO:0030958"}


id: MONDO:1011146
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Achondroplasia that occurs in water buffalo.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"achondroplasia, non-human animal","termid":"MONDO:1010291"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"achondroplasia, water buffalo","secondary_identifiers":["OMIA:000004-89462"],"termid":"MONDO:1011146","xrefs":{"Monarch":{"xref_id":"1011146"}}}


id: PATO:0000042
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000042 relative distance (obsolete PATO:0000042)","termid":"PATO:0000042"}


id: PR:O94570
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A valine--pyruvate aminotransferase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02405","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aromatic amino acid aminotransferase C1773.13 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1773.13","secondary_identifiers":["UniProtKB:O94570"],"synonyms":[{"name":"Spom972h-avtA","type":"exact"}],"termid":"PR:O94570"}


id: GO:1990253
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of leucine.","definition_xrefs":["PMID:19033384"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to amino acid starvation","termid":"GO:0034198"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to leucine starvation","termid":"GO:1990253"}


id: PBO:0058415
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4784","termid":"PBO:0058415"}


id: FYPO:0007734
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the distribution of a protein localized to chromatin at the 3' ends of genes that can be transcribed by RNA polymerase III is increased.","definition_xrefs":["PomBase:mah","PMID:33771877"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to chromatin at 3' end of genes","termid":"FYPO:0007733"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"increased protein localization to chromatin at 3' end of RNA polymerase III-transcribed genes","synonyms":[{"name":"increased condensin localization to chromatin at 3' end of RNA polymerase III-transcribed genes","type":"narrow"},{"name":"increased protein localisation to chromatin at 3' end of RNA polymerase III-transcribed genes","type":"exact"},{"name":"increased protein localization to chromatin at 3' end of RNA polymerase III-transcribed genes during mitotic cell cycle","type":"related"},{"name":"increased protein localization to chromatin at 3' end of RNA polymerase III-transcribed genes during vegetative growth","type":"exact"},{"name":"increased protein localization to chromatin downstream of RNA polymerase III-transcribed genes","type":"exact"}],"termid":"FYPO:0007734"}


id: MONDO:0010536
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin, beta","secondary_identifiers":["MEDGEN:854410","OMIM:301850","UMLS:C3887557"],"synonyms":[{"name":"tubulin, beta","type":"exact"}],"termid":"MONDO:0010536","xrefs":{"Monarch":{"xref_id":"0010536"}}}


id: MONDO:0012060
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal recessive nonsyndromic deafness in which the cause of the disease is a mutation in the ESRRB gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hearing loss, autosomal recessive","termid":"MONDO:0019588"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0019497"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0019497"],"is_obsolete":false,"name":"autosomal recessive nonsyndromic hearing loss 35","secondary_identifiers":["OMIM:608565","GARD:22609","DOID:0110493","UMLS:C1837857","MEDGEN:324897","MESH:C563908"],"synonyms":[{"name":"DFNB35","type":"narrow"},{"name":"ESRRB autosomal recessive nonsyndromic deafness","type":"narrow"},{"name":"autosomal recessive deafness 35","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness 35","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness caused by mutation in ESRRB","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness type 35","type":"narrow"},{"name":"autosomal recessive nonsyndromic hearing loss 35","type":"exact"},{"name":"deafness, autosomal recessive 35","type":"narrow"},{"name":"deafness, autosomal recessive type 35","type":"narrow"}],"termid":"MONDO:0012060","xrefs":{"Monarch":{"xref_id":"0012060"}}}


id: GO:0030027
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A thin sheetlike process extended by the leading edge of a migrating cell or extending cell process; contains a dense meshwork of actin filaments.","definition_xrefs":["ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane bounded cell projection","termid":"GO:0120025"},{"relation_name":"part_of","term_name":"cell leading edge","termid":"GO:0031252"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"lamellipodium","secondary_identifiers":["Wikipedia:Lamellipodia"],"termid":"GO:0030027"}


id: GO:0002614
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of monocyte antigen processing and presentation.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of antigen processing and presentation","termid":"GO:0002578"},{"relation_name":"is_a","term_name":"regulation of monocyte antigen processing and presentation","termid":"GO:0002613"},{"relation_name":"negatively_regulates","term_name":"monocyte antigen processing and presentation","termid":"GO:0002471"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of monocyte antigen processing and presentation","synonyms":[{"name":"down regulation of monocyte antigen processing and presentation","type":"exact"},{"name":"down-regulation of monocyte antigen processing and presentation","type":"exact"},{"name":"downregulation of monocyte antigen processing and presentation","type":"exact"},{"name":"inhibition of monocyte antigen processing and presentation","type":"narrow"}],"termid":"GO:0002614"}


id: MONDO:0019139
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Acquired hemophilia is a bleeding disorder that interferes with the body's blood clotting process. Signs and symptoms include prolonged bleeding, frequent nosebleeds, bruising throughout the body, solid swellings of congealed blood (hematomas), hematuria, and gastrointestinal or urologic bleeding. Acquired hemophilia occurs when the body's immune system attacks and disables a certain protein that helps the blood clot. About half of the cases are associated with other conditions, such as pregnancy, autoimmune disease, cancer, skin diseases, or allergic reactions to medications.","definition_xrefs":["GARD:0010350"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hemorrhagic disease","termid":"MONDO:0002243"},{"relation_name":"is_a","term_name":"hemophilia","termid":"MONDO:0018660"},{"relation_name":"is_a","term_name":"acquired coagulation factor deficiency","termid":"MONDO:0020599"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"acquired hemophilia","secondary_identifiers":["ICD10CM:D68.311","MEDGEN:204253","NANDO:1200898","GARD:10350","MESH:C536392","Orphanet:73274","UMLS:C1096116","MedDRA:10053745"],"synonyms":[{"name":"acquired hemophilia","type":"exact"},{"name":"hemophilia, acquired","type":"exact"}],"termid":"MONDO:0019139","xrefs":{"Monarch":{"xref_id":"0019139"}}}


id: PBO:0056298
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microtubule associated protein 1 light chain 3 beta 2","termid":"PBO:0056298"}


id: SO:0001478
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A promoter trap construct is a type of engineered plasmid which is designed to integrate into a genome and express a reporter when inserted in close proximity to a promoter element. Promoter traps typically do not contain promoter elements and are mutagenic.","definition_xrefs":["ZFIN:dh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"engineered_plasmid","termid":"SO:0000637"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"promoter_trap_construct","synonyms":[{"name":"promoter trap construct","type":"exact"}],"termid":"SO:0001478"}


id: PBO:0040691
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BRCA2 and CDKN1A interacting protein","termid":"PBO:0040691"}


id: GO:0050603
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: AH(2) + O2 + thiophene-2-carbonyl-CoA = 5-hydroxythiophene-2-carbonyl-CoA + A + H2O + H+.","definition_xrefs":["EC:1.14.99.35","RHEA:18929"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monooxygenase activity","termid":"GO:0004497"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"thiophene-2-carbonyl-CoA monooxygenase activity","secondary_identifiers":["KEGG_REACTION:R05742","MetaCyc:1.14.99.35-RXN","UM-BBD_reactionID:r1235"],"synonyms":[{"name":"thiophene-2-carbonyl-CoA, hydrogen-donor:oxygen oxidoreductase activity","type":"related"},{"name":"thiophene-2-carboxyl-CoA dehydrogenase activity","type":"related"},{"name":"thiophene-2-carboxyl-CoA hydroxylase activity","type":"related"},{"name":"thiophene-2-carboxyl-CoA monooxygenase activity","type":"related"}],"termid":"GO:0050603"}


id: GO:0050512
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: beta-D-galactosyl-(1,4)-D-glucosylceramide + UDP-galactose = alpha-D-galactosyl-(1,4)-beta-D-galactosyl-(1,4)-D-glucosylceramide + UDP.","definition_xrefs":["MetaCyc:2.4.1.228-RXN","EC:2.4.1.228"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-galactosyltransferase activity","termid":"GO:0035250"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016757"],"is_obsolete":false,"name":"lactosylceramide 4-alpha-galactosyltransferase activity","secondary_identifiers":["Reactome:R-HSA-9846477","RHEA:11924"],"synonyms":[{"name":"Gal-beta-(1,4)-Glc-beta-1-Cer alpha-(1,4)-galactosyltransferase activity","type":"related"},{"name":"Gal-beta-1,4-Glc-beta-1-Cer alpha-1,4-galactosyltransferase activity","type":"related"},{"name":"UDP-galactose:lactosylceramide 4II-alpha-D-galactosyltransferase activity","type":"related"},{"name":"globotriaosylceramide/CD77 synthase activity","type":"narrow"},{"name":"histo-blood group P(k) UDP-galactose activity","type":"narrow"},{"name":"histo-blood group Pk UDP-galactose","type":"related"},{"name":"lactosylceramide 4-a-galactosyltransferase activity","type":"exact"}],"termid":"GO:0050512"}


id: PR:O74471
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cox13 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74471"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 6A, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1739.09c","synonyms":[{"name":"Spom972h-cox13","type":"exact"},{"name":"cytochrome c oxidase polypeptide VIa (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74471"}


id: GO:0097340
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that prevents the activation of an inactive cysteine-type endopeptidase.","definition_xrefs":["GOC:mtg_apoptosis","PMID:20383739"],"gene_count":0,"genotype_count":0,"name":"obsolete inhibition of cysteine-type endopeptidase activity (obsolete GO:0097340)","synonyms":[{"name":"inhibition of caspase activity","type":"narrow"},{"name":"prevention of caspase activity","type":"narrow"},{"name":"prevention of cysteine-type endopeptidase activity","type":"exact"}],"termid":"GO:0097340"}


id: MONDO:0014320
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Optic atrophy-intellectual disability syndrome is a rare, hereditary, syndromic intellectual disability characterized by developmental delay, intellectual disability, and significant visual impairment due to optic nerve atrophy, optic nerve hypoplasia or cerebral visual impairment. Other common clinical signs and symptoms are hypotonia, oromotor dysfunction, seizures, autism spectrum disorder, and repetitive behaviors. Dysmorphic facial features are variable and nonspecific.","definition_xrefs":["Orphanet:401777"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Bosch-Boonstra-Schaaf optic atrophy syndrome","secondary_identifiers":["UMLS:C3810363","MEDGEN:816693","OMIM:615722","DOID:0112226","GARD:12903","ICD10CM:H47.2"],"synonyms":[{"name":"BBSOAS","type":"exact"},{"name":"Bosch-Boonstra-Schaaf optic atrophy syndrome","type":"exact"},{"name":"optic atrophy-intellectual disability syndrome","type":"exact"}],"termid":"MONDO:0014320","xrefs":{"Monarch":{"xref_id":"0014320"}}}


id: PBO:0077077
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TIAM Rac1 associated GEF 2","termid":"PBO:0077077"}


id: PBO:0070560
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 26","termid":"PBO:0070560"}


id: MONDO:0009243
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Fraser-like syndrome","secondary_identifiers":["UMLS:C1856708","MEDGEN:346426","OMIM:229230","Orphanet:2051","MESH:C565562"],"synonyms":[{"name":"Fraser-like syndrome","type":"exact"},{"name":"Fused eyelids, airway anomalies, ovarian cysts, and digital anomalies","type":"related"}],"termid":"MONDO:0009243","xrefs":{"Monarch":{"xref_id":"0009243"}}}


id: PATO:0000915
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A 1-D extent quality which is equal to the dimension through an object as opposed to its length or width.","definition_xrefs":["WordNet:WordNet"],"direct_ancestors":[{"relation_name":"is_a","term_name":"1-D extent","termid":"PATO:0001708"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thickness","termid":"PATO:0000915"}


id: GO:0048238
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The volume enclosed by the membranes of the smooth endoplasmic reticulum.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endoplasmic reticulum lumen","termid":"GO:0005788"},{"relation_name":"part_of","term_name":"smooth endoplasmic reticulum","termid":"GO:0005790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005783"}],"interesting_parent_ids":["GO:0005737","GO:0005783","GO:0005575"],"is_obsolete":false,"name":"smooth endoplasmic reticulum lumen","secondary_identifiers":["NIF_Subcellular:sao927884761"],"synonyms":[{"name":"SER lumen","type":"exact"},{"name":"smooth ER lumen","type":"exact"}],"termid":"GO:0048238"}


id: FYPO:0007100
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the first meiotic nuclear division is arrested in prophase I under conditions where arrest does not normally occur, and with telomeres clustered at the spindle pole body. Telomere clustering at the SPB indicates that the cell has reached or passed the pachytene stage.","definition_xrefs":["PMID:21449049","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormally arrested meiosis I","termid":"FYPO:0002817"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000631","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abnormal cell cycle arrest in meiotic prophase I with clustered telomeres","synonyms":[{"name":"abnormal cell cycle arrest in meiotic prophase I at or after pachytene","type":"exact"},{"name":"abnormal cell cycle arrest in meiotic prophase I with telomeres clustered at SPB","type":"exact"},{"name":"abnormal cell cycle arrest in meiotic prophase I with telomeres clustered at spindle pole bodies","type":"exact"}],"termid":"FYPO:0007100"}


id: MONDO:0015830
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mullerian aplasia","termid":"MONDO:0019128"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"partial bilateral aplasia of the mullerian ducts","secondary_identifiers":["Orphanet:180068","UMLS:C5679589","GARD:20172","MEDGEN:1843187"],"synonyms":[{"name":"incomplete bilateral aplasia of the Mullerian ducts","type":"exact"},{"name":"incomplete bilateral aplasia of the Müllerian ducts","type":"exact"},{"name":"partial bilateral aplasia of the Müllerian ducts","type":"related"}],"termid":"MONDO:0015830","xrefs":{"Monarch":{"xref_id":"0015830"}}}


id: PBO:0074731
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 89","termid":"PBO:0074731"}


id: PBO:0067343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 440, pseudogene","termid":"PBO:0067343"}


id: PBO:0090436
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNase MRP subunit Rmp1/NEPRO","termid":"PBO:0090436"}


id: FYPO:0002749
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-asparagine measured in the cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cellular amino acid level","termid":"FYPO:0003985"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased cellular asparagine level","synonyms":[{"name":"decreased cellular L-asparagine level","type":"exact"},{"name":"decreased cellular asparagine level during mitotic cell cycle","type":"related"},{"name":"decreased cellular asparagine level during vegetative growth","type":"exact"},{"name":"decreased level of asparagine in cell","type":"exact"},{"name":"reduced cellular asparagine level","type":"exact"},{"name":"reduced level of asparagine in cell","type":"exact"}],"termid":"FYPO:0002749"}


id: PBO:0009381
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"named from map position","termid":"PBO:0009381"}


id: PBO:0033800
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_intracellular_protein_transport","termid":"PBO:0033800"}


id: PBO:0065047
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRELI domain containing 3B pseudogene 1","termid":"PBO:0065047"}


id: PBO:0061775
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"obscurin like cytoskeletal adaptor 1","termid":"PBO:0061775"}


id: PBO:0079882
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uroplakin 3A","termid":"PBO:0079882"}


id: GO:0072390
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving phenol, a compound that consists of a benzene ring with one attached hydroxyl group.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenol-containing compound metabolic process","termid":"GO:0018958"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"phenol metabolic process","termid":"GO:0072390"}


id: PBO:0062780
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 56 subfamily B member 2 pseudogene","termid":"PBO:0062780"}


id: PATO:0002029
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An osmolality which is relatively high.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"osmolality","termid":"PATO:0002027"},{"relation_name":"is_a","term_name":"increased object quality","termid":"PATO:0002305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased osmolality","synonyms":[{"name":"high osmolality","type":"exact"}],"termid":"PATO:0002029"}


id: GO:0001816
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of a cytokine due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gene expression","termid":"GO:0010467"},{"relation_name":"is_a","term_name":"multicellular organismal process","termid":"GO:0032501"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"cytokine production","secondary_identifiers":["GO:0050663","GO:0042032","GO:0042089","GO:0042107"],"synonyms":[{"name":"cytokine biosynthetic process","type":"narrow"},{"name":"cytokine metabolic process","type":"narrow"},{"name":"cytokine secretion","type":"narrow"},{"name":"interferon production","type":"narrow"},{"name":"interferon secretion","type":"narrow"},{"name":"interleukin production","type":"narrow"},{"name":"interleukin secretion","type":"narrow"}],"termid":"GO:0001816"}


id: GO:0018280
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A protein glycosylation process in which a carbohydrate or carbohydrate derivative unit is added to a protein via a sulfur atom of a peptidyl-amino-acid such as cysteine or methionine.","definition_xrefs":["GOC:pr","GOC:ai","GOC:jsg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein glycosylation","termid":"GO:0006486"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006486"}],"interesting_parent_ids":["GO:0008150","GO:0006486"],"is_obsolete":false,"name":"protein S-linked glycosylation","synonyms":[{"name":"protein amino acid S-linked glycosylation","type":"exact"}],"termid":"GO:0018280"}


id: PBO:0083685
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Enolase, a phosphopyruvate hydratase; catalyzes the conversion of 2-phosphoglycerate to phosphoenolpyruvate; complements the growth defect of an ENO1 ENO2 double mutant","termid":"PBO:0083685"}


id: GO:0070115
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The region between the inner and outer lipid bilayers that surround an organellar chromatophore.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"organellar chromatophore","termid":"GO:0070111"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0031410"],"is_obsolete":false,"name":"organellar chromatophore intermembrane space","synonyms":[{"name":"Paulinella-type chromatophore intermembrane space","type":"exact"}],"termid":"GO:0070115"}


id: GO:0048572
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a day length that falls short of a particular duration known as the 'critical day length'. The critical day length varies between species. Although the term short-day is used, most species actually respond to the duration of the night, so that the response will occur when a period of darkness exceeds the number of hours defined by 24 hours minus the critical day length.","definition_xrefs":["GOC:jid","ISBN:0697037754","ISBN:0582015952","ISBN:0709408862","GOC:pj"],"direct_ancestors":[{"relation_name":"is_a","term_name":"photoperiodism","termid":"GO:0009648"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"short-day photoperiodism","synonyms":[{"name":"long-night photoperiodism","type":"exact"},{"name":"response to long-night","type":"exact"},{"name":"response to short-day","type":"exact"},{"name":"response to short-day photoperiod","type":"related"}],"termid":"GO:0048572"}


id: GO:0140617
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. An epigenetic regulation of transcription by physical interaction between a cis-acting element (enhancer, silencer) of one allele on one chromosome and the promoter of the corresponding allele on the homologous chromosome. Transvection can lead to either gene activation or repression.","definition_xrefs":["PMID:24236213","PMID:33479152"],"gene_count":0,"genotype_count":0,"name":"obsolete transvection (obsolete GO:0140617)","termid":"GO:0140617"}


id: GO:0044445
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Any constituent part of cytosol, that part of the cytoplasm that does not contain membranous or particulate subcellular components.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete cytosolic part (obsolete GO:0044445)","synonyms":[{"name":"cytosol component","type":"exact"}],"termid":"GO:0044445"}


id: PBO:0054575
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1977","termid":"PBO:0054575"}


id: PBO:0063500
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyruvate dehydrogenase phosphatase catalytic subunit 1","termid":"PBO:0063500"}


id: GO:0106321
data:
  {"annotated_genes":["SJAG_01457"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[103799],"is_not":false,"summary":null,"term":"GO:0106321"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: S-(hydroxymethyl)glutathione + NADP+ = S-formylglutathione + NADPH + H+.","definition_xrefs":["RHEA:19981"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-(hydroxymethyl)glutathione dehydrogenase [NAD(P)+] activity","termid":"GO:0051903"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01457":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"S-(hydroxymethyl)glutathione dehydrogenase (NADP+) activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0106321","terms_by_termid":{"GO:0106321":null}}


id: PBO:0082295
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Arginyl-tRNA-protein transferase; catalyzes post-translational conjugation of arginine to the amino termini of acceptor proteins which are then subject to degradation via the N-end rule pathway; may have a role in regulating stress response","termid":"PBO:0082295"}


id: GO:0031392
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of prostaglandin.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of unsaturated fatty acid biosynthetic process","termid":"GO:2001279"},{"relation_name":"regulates","term_name":"prostaglandin biosynthetic process","termid":"GO:0001516"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006629"],"is_obsolete":false,"name":"regulation of prostaglandin biosynthetic process","synonyms":[{"name":"regulation of prostaglandin anabolism","type":"exact"},{"name":"regulation of prostaglandin biosynthesis","type":"exact"},{"name":"regulation of prostaglandin formation","type":"exact"},{"name":"regulation of prostaglandin synthesis","type":"exact"}],"termid":"GO:0031392"}


id: SO:0002114
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A protein coding transcript that contains a CDS but has one or more splice junctions >50bp downstream of stop codon, making it susceptible to nonsense mediated decay.","definition_xrefs":["GENCODE:http://www.gencodegenes.org/gencode_biotypes.html"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein_coding_primary_transcript","termid":"SO:0000120"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NMD_transcript","secondary_identifiers":["http://www.gencodegenes.org/gencode_biotypes.html"],"synonyms":[{"name":"NMD transcript","type":"exact"},{"name":"nonsense mediated decay transcript","type":"exact"},{"name":"protein_coding_NMD","type":"exact"}],"termid":"SO:0002114"}


id: MOD:00021
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts a source amino acid residue to L-lysine.","definition_xrefs":["RESID:AA0012","DeltaMass:0","ChEBI:29967","PubMed:6120171","PubMed:3106962","PubMed:6692818"],"direct_ancestors":[{"relation_name":"is_a","term_name":"residues isobaric at 128.0-128.1","termid":"MOD:00893"},{"relation_name":"is_a","term_name":"natural, standard, encoded residue","termid":"MOD:01441"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-lysine residue","synonyms":[{"name":"(2S)-2,6-diaminohexanoic acid","type":"exact"},{"name":"2,6-bis(azanyl)hexanoic acid","type":"exact"},{"name":"6-amino-L-norleucine","type":"exact"},{"name":"ACT_SITE Schiff-base intermediate with substrate","type":"exact"},{"name":"L-lysine","type":"exact"},{"name":"Lys","type":"exact"},{"name":"alpha,epsilon-diaminocaproic acid","type":"exact"}],"termid":"MOD:00021"}


id: PBO:0054882
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2296","termid":"PBO:0054882"}


id: MOD:01296
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-glutamic acid residue to monosodium L-glutamate.","definition_xrefs":["PubMed:12216740","Unimod:30#E"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monosodium salt","termid":"MOD:00423"},{"relation_name":"is_a","term_name":"modified L-glutamic acid residue","termid":"MOD:00906"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"monosodium L-glutamate","synonyms":[{"name":"Cation:Na","type":"related"},{"name":"MSG","type":"exact"},{"name":"Na1Glu","type":"exact"},{"name":"Sodium adduct","type":"related"}],"termid":"MOD:01296"}


id: GO:0062185
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction:2 H+ + O2 + 2 reduced [adrenodoxin] + secalciferol = calcitetrol + H2O + 2 oxidized [adrenodoxin].","definition_xrefs":["RHEA:49064","PMID:10518789"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monooxygenase activity","termid":"GO:0004497"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"secalciferol 1-monooxygenase activity","termid":"GO:0062185"}


id: MONDO:0018879
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Lichen planopilaris (LPP) is a rare cutaneous variant of lichen planus which affects hair follicles. It may occur on its own or in association with more common forms of lichen planus, usually classical type and/or oral lichen planus.","definition_xrefs":["Orphanet:525"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alopecia","termid":"MONDO:0004907"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lichen planopilaris","secondary_identifiers":["GARD:3247","ICD10CM:L66.1","SCTID:64540004","MESH:C535892","icd11.foundation:572258139","UMLS:C0023645","MEDGEN:44150"],"synonyms":[{"name":"Kossard disease","type":"related"},{"name":"LPP","type":"exact"},{"name":"follicular lichen planus","type":"exact"},{"name":"frontal fibrosing alopecia (subtype)","type":"related"},{"name":"lichen follicularis","type":"exact"},{"name":"lichen planopilaris classic type","type":"related"},{"name":"lichen planus follicularis","type":"exact"}],"termid":"MONDO:0018879","xrefs":{"Monarch":{"xref_id":"0018879"}}}


id: PBO:0030079
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_glutamate_import_during_nitrogen_starvation","termid":"PBO:0030079"}


id: GO:0015626
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of L-diaminopimelate from one side of a membrane to the other. L-diaminopimelate is the L-enantiomer anion of 2,6-diaminoheptanedioic acid.","definition_xrefs":["GOC:jsg","GOC:mah","GOC:mtg_transport","ISBN:0198506732","ISBN:0815340729","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-amino acid transmembrane transporter activity","termid":"GO:0015179"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"L-diaminopimelate transmembrane transporter activity","synonyms":[{"name":"L-diaminopimelate transporter activity","type":"broad"},{"name":"cystine/diaminopimelate porter activity","type":"narrow"}],"termid":"GO:0015626"}


id: PBO:0065940
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"receptor for activated C kinase 1","termid":"PBO:0065940"}


id: PBO:0071715
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L39 pseudogene 13","termid":"PBO:0071715"}


id: PBO:0040170
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ASNS pseudogene 1","termid":"PBO:0040170"}


id: PBO:0069255
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 510, pseudogene","termid":"PBO:0069255"}


id: MONDO:0019973
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Persistent placoid maculopathy is characterized by white plaque-like lesions involving the macula but sparing the peripapillary areas of both eyes. It has been described in five patients. In contrast to patients with macular serpiginous choroiditis presenting with similar lesions, the five patients reported so far with persistent placoid maculopathy had good visual acuity until the onset of choroidal neovascularization (CNV) or pigmentary mottling. The macular lesions fade after several months or years, but the vascular anomalies persist leading to a loss of central vision.","definition_xrefs":["Orphanet:97341"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinal disorder","termid":"MONDO:0005283"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"persistent placoid maculopathy","secondary_identifiers":["UMLS:C4304823","GARD:19369","SCTID:719297006","icd11.foundation:1143591468","MEDGEN:930492"],"termid":"MONDO:0019973","xrefs":{"Monarch":{"xref_id":"0019973"}}}


id: GO:0018590
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: methylsilanetriol + O2 + 2 H+ + 2 e- = H2O + hydroxymethylsilanetriol.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete methylsilanetriol hydroxylase activity (obsolete GO:0018590)","termid":"GO:0018590"}


id: GO:0018846
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: styrene oxide = phenylacetaldehyde.","definition_xrefs":["EC:5.3.99.7","RHEA:21604"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular oxidoreductase activity","termid":"GO:0016860"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016853","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"styrene-oxide isomerase activity","secondary_identifiers":["MetaCyc:STYRENE-OXIDE-ISOMERASE-RXN","UM-BBD_reactionID:r0034","KEGG_REACTION:R02615"],"synonyms":[{"name":"SOI activity","type":"related"},{"name":"styrene oxide isomerase activity","type":"exact"},{"name":"styrene-oxide isomerase (epoxide-cleaving)","type":"related"}],"termid":"GO:0018846"}


id: PBO:0062837
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oligosaccharyltransferase complex subunit pseudogene 3","termid":"PBO:0062837"}


id: GO:0010964
data:
  {"annotated_genes":["SJAG_04369","SJAG_03664"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[118083],"is_not":false,"summary":null,"term":"GO:0010964"},{"annotations":[108813],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0060906"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of small non-coding RNA-mediated heterochromatin formation.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of heterochromatin formation","termid":"GO:0031445"},{"relation_name":"is_a","term_name":"regulation of gene silencing by regulatory ncRNA","termid":"GO:0060966"},{"relation_name":"regulates","term_name":"regulatory ncRNA-mediated heterochromatin formation","termid":"GO:0031048"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03664":null,"SJAG_04369":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006325"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0006325","GO:0008150"],"is_obsolete":false,"name":"regulation of regulatory ncRNA-mediated heterochromatin formation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of RNAi-mediated heterochromatin assembly","type":"exact"},{"name":"regulation of chromatin silencing by small RNA","type":"narrow"},{"name":"regulation of heterochromatin assembly by small RNA","type":"narrow"},{"name":"regulation of ncRNA-mediated heterochromatin formation","type":"exact"},{"name":"regulation of small non-coding RNA-mediated heterochromatin formation","type":"narrow"}],"termid":"GO:0010964","terms_by_termid":{"GO:0010964":null,"GO:0060906":null}}


id: PBO:0080517
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WASF3 antisense RNA 1","termid":"PBO:0080517"}


id: PBO:0069332
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 591, pseudogene","termid":"PBO:0069332"}


id: PBO:0088903
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GET complex (ER membrane insertion) subunit Get1","termid":"PBO:0088903"}


id: FYPO:0008372
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cell surface is normal (i.e. indistinguishable from wild-type.","definition_xrefs":["PomBase:pb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization during vegetative growth","termid":"FYPO:0000644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001312","FYPO:0000002","FYPO:0000138","FYPO:0000257"],"is_obsolete":false,"name":"normal protein localization to cell surface during vegetative growth","termid":"FYPO:0008372"}


id: MONDO:0017825
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"non-functioning pituitary adenoma","termid":"MONDO:0019613"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"silent pituitary adenoma","secondary_identifiers":["MEDGEN:90850","ICD10CM:D35.2","GARD:21392","UMLS:C0338078","Orphanet:314786"],"termid":"MONDO:0017825","xrefs":{"Monarch":{"xref_id":"0017825"}}}


id: PBO:0079844
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unc-13 homolog C","termid":"PBO:0079844"}


id: PBO:0001371
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptionally regulates isa1","termid":"PBO:0001371"}


id: GO:0062182
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: all-trans-retinoate + O2 + reduced [NADPH--hemoprotein reductase] = all-trans-(4S)-hydroxyretinoate + H+ + H2O + oxidized [NADPH--hemoprotein reductase].","definition_xrefs":["PMID:9250660","PMID:9716180","RHEA:51492"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinoic acid 4-hydroxylase activity","termid":"GO:0008401"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"all-trans retinoic acid 4-hydrolase activity","termid":"GO:0062182"}


id: SO:0000566
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene, one VJ-gene, one J-gene and one C-gene.","direct_ancestors":[{"relation_name":"has_part","term_name":"V_gene_segment","termid":"SO:0000466"},{"relation_name":"has_part","term_name":"J_gene_segment","termid":"SO:0000470"},{"relation_name":"has_part","term_name":"C_gene_segment","termid":"SO:0000478"},{"relation_name":"has_part","term_name":"VJ_gene_segment","termid":"SO:0000576"},{"relation_name":"is_a","term_name":"vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster","termid":"SO:0000938"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V_VJ_J_C_cluster","synonyms":[{"name":"V VJ J C cluster","type":"exact"},{"name":"V-(VJ)-J-C-CLUSTER","type":"exact"}],"termid":"SO:0000566"}


id: PBO:0008178
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial inner membrane protein Sls1 (predicted)","termid":"PBO:0008178"}


id: GO:0010105
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops or prevents ethylene (ethene) signal transduction.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of ethylene-activated signaling pathway","termid":"GO:0010104"},{"relation_name":"is_a","term_name":"negative regulation of phosphorelay signal transduction system","termid":"GO:0070298"},{"relation_name":"negatively_regulates","term_name":"ethylene-activated signaling pathway","termid":"GO:0009873"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of ethylene-activated signaling pathway","synonyms":[{"name":"down regulation of ethylene mediated signaling pathway","type":"exact"},{"name":"down-regulation of ethylene mediated signaling pathway","type":"exact"},{"name":"downregulation of ethylene mediated signaling pathway","type":"exact"},{"name":"inhibition of ethylene mediated signaling pathway","type":"narrow"},{"name":"negative regulation of ethene mediated signaling pathway","type":"exact"},{"name":"negative regulation of ethene mediated signalling pathway","type":"exact"},{"name":"negative regulation of ethylene mediated signaling pathway","type":"related"},{"name":"negative regulation of ethylene mediated signalling pathway","type":"exact"}],"termid":"GO:0010105"}


id: PBO:0027661
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-cut_during_cellular_response_to_methyl_methanesulfonate","termid":"PBO:0027661"}


id: GO:0034690
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An integrin complex that comprises one alphaD subunit and one beta2 subunit.","definition_xrefs":["PMID:12297042"],"direct_ancestors":[{"relation_name":"is_a","term_name":"integrin complex","termid":"GO:0008305"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005886","GO:0005575"],"is_obsolete":false,"name":"integrin alphaD-beta2 complex","synonyms":[{"name":"Itgad-Itgb2 complex","type":"narrow"},{"name":"alphaD-beta2 integrin complex","type":"exact"}],"termid":"GO:0034690"}


id: MOD:00070
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-alanine residue to N-methyl-L-alanine.","definition_xrefs":["PubMed:337304","PubMed:7007074","PubMed:323502","RESID:AA0061","ChEBI:17519"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-methylated alanine","termid":"MOD:01461"},{"relation_name":"is_a","term_name":"alpha-amino monomethylated residue","termid":"MOD:01680"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"N-methyl-L-alanine","synonyms":[{"name":"(2S)-2-methylaminopropanoic acid","type":"exact"},{"name":"2-methylazanylpropanoic acid","type":"exact"},{"name":"MOD_RES N-methylalanine","type":"exact"},{"name":"Methyl","type":"related"},{"name":"Methylation","type":"related"},{"name":"N-methyl-L-alanine","type":"exact"},{"name":"N-methylalanine","type":"exact"},{"name":"N-methylated L-alanine","type":"exact"},{"name":"NMe1Ala","type":"exact"}],"termid":"MOD:00070"}


id: MONDO:0014101
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any muscular dystrophy-dystroglycanopathy, type A in which the cause of the disease is a mutation in the POMK gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"muscular dystrophy-dystroglycanopathy, type A","termid":"MONDO:0000171"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320","MONDO:0005336"],"is_obsolete":false,"name":"muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 12","secondary_identifiers":["OMIM:615249","MEDGEN:815294","DOID:0111235","GARD:15927","UMLS:C3808964"],"synonyms":[{"name":"MDDGA12","type":"related"},{"name":"POMK muscular dystrophy-dystroglycanopathy, type A","type":"exact"},{"name":"Walker-Warburg syndrome or muscle-eye-brain disease, POMK-related","type":"related"},{"name":"muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 12","type":"related"},{"name":"muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 12","type":"exact"},{"name":"muscular dystrophy-dystroglycanopathy, type A caused by mutation in POMK","type":"exact"}],"termid":"MONDO:0014101","xrefs":{"Monarch":{"xref_id":"0014101"}}}


id: GO:1901850
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving 7,8-didemethyl-8-hydroxy-5-deazariboflavin.","definition_xrefs":["GOC:TermGenie","UniPathway:UPA00072","GOC:yaf","PMID:14593448"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic process","termid":"GO:0008152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"7,8-didemethyl-8-hydroxy-5-deazariboflavin metabolic process","synonyms":[{"name":"7,8-didemethyl-8-hydroxy-5-deazariboflavin metabolism","type":"exact"},{"name":"coenzyme F0 metabolism","type":"exact"}],"termid":"GO:1901850"}


id: GO:1900725
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving osmoregulated periplasmic glucan.","definition_xrefs":["GOC:TermGenie","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucan metabolic process","termid":"GO:0044042"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"osmoregulated periplasmic glucan metabolic process","synonyms":[{"name":"osmoregulated periplasmic glucan metabolism","type":"exact"}],"termid":"GO:1900725"}


id: PBO:0003745
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptional activator, MBF subunit Rep2","termid":"PBO:0003745"}


id: PBO:0036545
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone deacetylase complex subunit Sap18 (predicted)","termid":"PBO:0036545"}


id: PBO:0080574
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat domain 1","termid":"PBO:0080574"}


id: MONDO:1011171
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Osteochondrosis that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"osteochondrosis, non-human animal","termid":"MONDO:1010299"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"osteochondrosis, dog","secondary_identifiers":["OMIA:000750-9615"],"termid":"MONDO:1011171","xrefs":{"Monarch":{"xref_id":"1011171"}}}


id: PBO:0082402
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Beta subunit of the F1 sector of mitochondrial F1F0 ATP synthase; which is a large, evolutionarily conserved enzyme complex required for ATP synthesis; F1 translationally regulates ATP6 and ATP8 expression to achieve a balanced output of ATP synthase genes encoded in nucleus and mitochondria; phosphorylated","termid":"PBO:0082402"}


id: FYPO:0004867
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone H2A phosphorylation occurs to a lower extent than normal during a cellular response to ionizing radiation. All histone H2A phosphorylation may be affected, or phosphorylation of specific sites on histone H2A may be decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased histone H2A phosphorylation during vegetative growth","termid":"FYPO:0002598"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0002274","FYPO:0001985"],"is_obsolete":false,"name":"decreased histone H2A phosphorylation during cellular response to ionizing radiation","synonyms":[{"name":"decreased histone H2A phosphorylation during cellular response to ionizing radiation during mitotic cell cycle","type":"related"},{"name":"decreased histone H2A phosphorylation during cellular response to ionizing radiation during vegetative growth","type":"exact"},{"name":"reduced histone H2A phosphorylation during cellular response to ionizing radiation","type":"exact"}],"termid":"FYPO:0004867"}


id: PR:O60121
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A stomatin-like protein 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04040","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C16G5.07c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16G5.07c","secondary_identifiers":["UniProtKB:O60121"],"synonyms":[{"name":"Spom972h-STOML2","type":"exact"}],"termid":"PR:O60121"}


id: PBO:0053146
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lactate dehydrogenase A pseudogene 2","termid":"PBO:0053146"}


id: PBO:0061979
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily AS member 2 pseudogene","termid":"PBO:0061979"}


id: PBO:0043286
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-type lectin domain family 4 member O, pseudogene","termid":"PBO:0043286"}


id: PBO:0026994
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_phosphorylation_during_meiotic_cell_cycle","termid":"PBO:0026994"}


id: PBO:0063157
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paired box 3","termid":"PBO:0063157"}


id: PBO:0029249
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-actin_filaments_present_in_increased_numbers","termid":"PBO:0029249"}


id: PBO:0073192
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"selenoprotein V","termid":"PBO:0073192"}


id: PBO:0090423
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COPII-coated vesicle component Erv41","termid":"PBO:0090423"}


id: MONDO:0015082
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"alopecia","termid":"MONDO:0004907"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alopecia antibody deficiency","secondary_identifiers":["GARD:18713","MEDGEN:1683018","Orphanet:1006","UMLS:C5190867"],"synonyms":[{"name":"IPP-Gelfand syndrome","type":"exact"}],"termid":"MONDO:0015082","xrefs":{"Monarch":{"xref_id":"0015082"}}}


id: PBO:0108692
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ArfGEF Sec72","termid":"PBO:0108692"}


id: MONDO:0700255
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Paraneoplastic syndrome that involves the renal system.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"urinary system disorder","termid":"MONDO:0002118"},{"relation_name":"is_a","term_name":"paraneoplastic syndrome","termid":"MONDO:0021073"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paraneoplastic renal syndrome","termid":"MONDO:0700255","xrefs":{"Monarch":{"xref_id":"0700255"}}}


id: PBO:0073659
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SIN3 transcription regulator family member B","termid":"PBO:0073659"}


id: PBO:0088507
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribulose phosphate 3-epimerase Rpe1","termid":"PBO:0088507"}


id: MONDO:1010981
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hydranencephaly that occurs in sheep.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydranencephaly, non-human animal","termid":"MONDO:1010232"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydranencephaly, sheep","secondary_identifiers":["OMIA:000486-9940"],"termid":"MONDO:1010981","xrefs":{"Monarch":{"xref_id":"1010981"}}}


id: MONDO:0017208
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete intermediate uveitis (obsolete MONDO:0017208)","termid":"MONDO:0017208","xrefs":{"Monarch":{"xref_id":"0017208"}}}


id: PBO:0089221
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit L5","termid":"PBO:0089221"}


id: GO:0036301
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of macrophage colony-stimulating factor due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:BHF","GOC:vk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine production","termid":"GO:0001816"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"macrophage colony-stimulating factor production","synonyms":[{"name":"M-CSF production","type":"exact"}],"termid":"GO:0036301"}


id: PBO:0054910
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2324","termid":"PBO:0054910"}


id: PATO:0001592
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A curvature which is relatively high.","definition_xrefs":["PATO:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"curved","termid":"PATO:0000406"},{"relation_name":"is_a","term_name":"increased object quality","termid":"PATO:0002305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased curvature","termid":"PATO:0001592"}


id: GO:0031562
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Protein complex that has a role in determining cell polarity, found at the tip of a growing fungal hypha.","definition_xrefs":["PMID:15976451"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polarisome","termid":"GO:0000133"},{"relation_name":"part_of","term_name":"hyphal tip","termid":"GO:0001411"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005938"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0032991","GO:0005938"],"is_obsolete":false,"name":"hyphal tip polarisome","termid":"GO:0031562"}


id: RO:0002521
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"x is sequentially aligned with if a significant portion bases of x and y correspond in terms of their base type and their relative ordering","direct_ancestors":[{"relation_name":"is_a","term_name":"sequentially_related_to","termid":"RO:0002514"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"is_sequentially_aligned_with","termid":"RO:0002521"}


id: PBO:0075642
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sprouty RTK signaling antagonist 1","termid":"PBO:0075642"}


id: PBO:0034629
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_meiotic_centromere_clustering_with_centromeres_dissociated_from_spindle_pole_body","termid":"PBO:0034629"}


id: PBO:0050376
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A3","termid":"PBO:0050376"}


id: PBO:0069721
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1001, pseudogene","termid":"PBO:0069721"}


id: PBO:0076746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tectonic family member 1","termid":"PBO:0076746"}


id: MONDO:0006191
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A clear cell adenocarcinoma that involves the endometrium.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"clear cell adenocarcinoma","termid":"MONDO:0005004"},{"relation_name":"is_a","term_name":"endometrium adenocarcinoma","termid":"MONDO:0005461"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"endometrial clear cell adenocarcinoma","secondary_identifiers":["EFO:1000231","icd11.foundation:388735319","UMLS:C0279765","DOID:5299","MEDGEN:124655","NCIT:C8028"],"synonyms":[{"name":"clear cell carcinoma of endometrium","type":"exact"},{"name":"clear cell carcinoma of the endometrium","type":"exact"},{"name":"endometrial clear cell adenocarcinoma","type":"exact"},{"name":"endometrium clear cell adenocarcinoma","type":"exact"}],"termid":"MONDO:0006191","xrefs":{"Monarch":{"xref_id":"0006191"}}}


id: PBO:0041364
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 4 open reading frame 19","termid":"PBO:0041364"}


id: MONDO:0003257
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A low-grade neoplasm that arises from the neurohypophysis. It includes the granular cell tumor of the neurohypophysis and pituicytoma.","definition_xrefs":["NCIT:C7157"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pituitary tumor","termid":"MONDO:0017611"},{"relation_name":"is_a","term_name":"neuroendocrine disorder","termid":"MONDO:0100070"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"posterior pituitary gland neoplasm","secondary_identifiers":["MEDGEN:235368","UMLS:C1334957","DOID:5048"],"synonyms":[{"name":"Neurohypophysis neoplasm","type":"exact"},{"name":"Neurohypophysis tumor","type":"exact"},{"name":"Neurohypophysis tumour","type":"exact"},{"name":"PITUICYTOMA, benign","type":"exact"},{"name":"neoplasm of neurohypophysis","type":"exact"},{"name":"neurohypophysis neoplasm","type":"exact"},{"name":"neurohypophysis neoplasm (disease)","type":"exact"},{"name":"neurohypophysis tumor","type":"exact"},{"name":"neurohypophysis tumour","type":"exact"},{"name":"posterior pituitary gland neoplasm","type":"exact"},{"name":"posterior pituitary gland tumor","type":"exact"},{"name":"posterior pituitary gland tumour","type":"exact"},{"name":"posterior pituitary neoplasm","type":"exact"},{"name":"posterior pituitary tumor","type":"exact"},{"name":"posterior pituitary tumour","type":"exact"},{"name":"tumor of neurohypophysis","type":"exact"},{"name":"tumour of neurohypophysis","type":"exact"}],"termid":"MONDO:0003257","xrefs":{"Monarch":{"xref_id":"0003257"}}}


id: MONDO:0001938
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A non-neoplastic lesion that affects the vulva and is characterized by thinning or thickening of the skin and dryness.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vulvar disease","termid":"MONDO:0002187"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vulvar dystrophy","secondary_identifiers":["NCIT:C34565","ICD9:624.09","ICD9:624.0","DOID:14292","UMLS:C0013426","SCTID:51689003","MEDGEN:3942"],"synonyms":[{"name":"dystrophy of vulva","type":"exact"}],"termid":"MONDO:0001938","xrefs":{"Monarch":{"xref_id":"0001938"}}}


id: GO:0043441
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of acetoacetic acid, a beta-keto acid of the keto acid group, empirical formula is C4H6O3 or CH3COCH2COOH.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetoacetic acid metabolic process","termid":"GO:0043438"},{"relation_name":"is_a","term_name":"ketone body biosynthetic process","termid":"GO:0046951"},{"relation_name":"is_a","term_name":"short-chain fatty acid biosynthetic process","termid":"GO:0051790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629","GO:0044281","GO:0006091"],"is_obsolete":false,"name":"acetoacetic acid biosynthetic process","synonyms":[{"name":"acetoacetic acid anabolism","type":"exact"},{"name":"acetoacetic acid biosynthesis","type":"exact"},{"name":"acetoacetic acid formation","type":"exact"},{"name":"acetoacetic acid synthesis","type":"exact"}],"termid":"GO:0043441"}


id: PBO:0050635
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock transcription factor Y-linked 1","termid":"PBO:0050635"}


id: PBO:0048513
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GDP dissociation inhibitor 2","termid":"PBO:0048513"}


id: FYPO:0004183
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing papuamide B when cells in the population are undergoing conjugation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cell population growth","termid":"FYPO:0000047"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0002058","FYPO:0000139","FYPO:0000257","FYPO:0002057"],"is_obsolete":false,"name":"normal growth on papuamide B during mating","synonyms":[{"name":"normal cell population growth in presence of papuamide B during mating","type":"exact"},{"name":"normal cell population growth on papuamide B during mating","type":"exact"},{"name":"normal cellular response to papuamide B during mating","type":"related"},{"name":"normal growth on papuamide B during conjugation with cellular fusion","type":"exact"}],"termid":"FYPO:0004183"}


id: MONDO:0009377
data:
  {"annotated_genes":["SJAG_00695","SJAG_00636"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85380,85381],"is_not":false,"summary":null,"term":"MONDO:0009377"}]},"cv_name":"mondo","definition":"N-acetylglutamate synthase (NAGS) deficiency is a urea cycle disorder leading to hyperammonaemia.","definition_xrefs":["Orphanet:927"],"direct_ancestors":[{"relation_name":"is_a","term_name":"urea cycle disorder or inherited hyperammonemia","termid":"MONDO:0800153"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00636":null,"SJAG_00695":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004736"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004736"],"is_obsolete":false,"name":"hyperammonemia due to N-acetylglutamate synthase deficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:C536109","NANDO:1200808","SCTID:57119000","NANDO:2200477","NCIT:C129307","UMLS:C0268543","GARD:7158","DOID:0112258","NANDO:2201084","OMIM:237310","MEDGEN:120649"],"synonyms":[{"name":"N-acetyl glutamate synthetase deficiency","type":"related"},{"name":"N-acetylglutamate synthase deficiency","type":"related"},{"name":"N-acetylglutamate synthetase deficiency","type":"related"},{"name":"NAG synthetase deficiency","type":"related"},{"name":"NAGS deficiency","type":"exact"},{"name":"NAGSD","type":"related"},{"name":"Nags deficiency","type":"related"},{"name":"hyperammonemia due to N-acetylglutamate synthase deficiency","type":"exact"},{"name":"hyperammonemia due to N-acetylglutamate synthetase deficiency","type":"related"}],"termid":"MONDO:0009377","terms_by_termid":{"MONDO:0009377":null},"xrefs":{"Monarch":{"xref_id":"0009377"}}}


id: PBO:0057505
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 623","termid":"PBO:0057505"}


id: GO:0086100
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A G protein-coupled receptor signaling pathway initiated by endothelin binding to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["PMID:10977869","GOC:BHF","GOC:mtg_cardiac_conduct_nov11","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor signaling pathway","termid":"GO:0007186"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"endothelin receptor signaling pathway","synonyms":[{"name":"endothelin signaling pathway","type":"related"}],"termid":"GO:0086100"}


id: PBO:0071671
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L37 pseudogene 3","termid":"PBO:0071671"}


id: GO:0015744
data:
  {"annotated_genes":["SJAG_01406"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[101976],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098720"}]},"cv_name":"biological_process","definition":"The directed movement of succinate, the dianion of ethane dicarboxylic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C4-dicarboxylate transport","termid":"GO:0015740"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01406":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"succinate transport","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0015744","terms_by_termid":{"GO:0098720":null}}


id: MONDO:0009905
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"This syndrome is characterized by intellectual deficit, short stature, obesity, genital abnormalities, and hand and/or toe contractures. It has been described in two brothers and in one isolated case. The patients also present with generalized osteoporosis and a history of frequent fractures. This syndrome is similar to Prader-Willi syndrome, but the hand contractures and osteoporosis, together with the lack of hypotonia, indicate this is a different entity.","definition_xrefs":["Orphanet:3409"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"urban-Rogers-Meyer syndrome","secondary_identifiers":["SCTID:716334004","MEDGEN:162919","OMIM:264010","UMLS:C0796189","MESH:C538276","GARD:5426"],"synonyms":[{"name":"Prader-Willi habitus, osteopenia, and camptodactyly","type":"related"},{"name":"Prader-Willi habitus-osteopenia-camptodactyly syndrome","type":"exact"},{"name":"intellectual disability-short stature-hand contractures-genital anomalies syndrome","type":"exact"},{"name":"urban-Rogers-Meyer syndrome","type":"exact"}],"termid":"MONDO:0009905","xrefs":{"Monarch":{"xref_id":"0009905"}}}


id: GO:0034734
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A transcription factor complex that forms part of the TFIIIC complex, observed in human. The complex is poorly characterized, but contains the 250-kDa form of HsBdp1, and is thought to include nuclear factor 1 (NF1). It stimulates binding by human TFIIIC2 and is required for transcription activity.","definition_xrefs":["GOC:mah","PMID:11433012","PMID:15096501"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase III transcription regulator complex","termid":"GO:0090576"},{"relation_name":"part_of","term_name":"transcription factor TFIIIC complex","termid":"GO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"transcription factor TFIIIC1 complex","termid":"GO:0034734"}


id: PBO:0089908
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CIA machinery ATPase Nbp35","termid":"PBO:0089908"}


id: PBO:0027728
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_transcription_from_CDRE_promoter_in_response_to_salt_stress","termid":"PBO:0027728"}


id: PBO:0054979
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2393","termid":"PBO:0054979"}


id: MONDO:0015916
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare neuroinflammatory or neuroimmunological disease (obsolete MONDO:0015916)","secondary_identifiers":["Orphanet:182064"],"termid":"MONDO:0015916","xrefs":{"Monarch":{"xref_id":"0015916"}}}


id: MONDO:0023094
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Exogenous ochronosis refers tothe bluish-black discoloration of certain tissues, such as the ear cartilage, the ocular (eye) tissue, and other body locations when it is due toexposure to various substances.It has been reported most commonly with topical application of hydroquinones to the skin. The discolorationmay becaused byan effect ontyrosinase(an enzyme located in melanocytes, which are skincells that produce pigment), or by inhibiting homogentisic acid oxidase, resulting in the accumulation and deposition of homogentisic acid (HGA) in cartilage. The discoloration is often permanent, but when exogenous ochronosis is caused by topical hydroquinones, carbon dioxide lasers and dermabrasion have been reported to be helpful. Exogenous ochronosis is different from hereditary ochronosis, which is an inherited condition that occurs with alkaptonuria.","definition_xrefs":["GARD:0010757"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ochronosis disorder","termid":"MONDO:0001910"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"exogenous ochronosis","secondary_identifiers":["ICD9:270.2","MEDGEN:1854236","UMLS:C5887145","SCTID:410041002","MESH:C531762","icd11.foundation:835922687"],"synonyms":[{"name":"exogenous ochronosis","type":"exact"},{"name":"ochronosis, acquired","type":"related"},{"name":"ocular ochronosis","type":"related"},{"name":"pseudo-ochronosis","type":"related"}],"termid":"MONDO:0023094","xrefs":{"Monarch":{"xref_id":"0023094"}}}


id: FYPO:0003002
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the centromere of a chromosome is decreased during metaphase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to centromere during vegetative growth","termid":"FYPO:0000450"},{"relation_name":"is_a","term_name":"abnormal protein localization to centromere during mitotic metaphase","termid":"FYPO:0006175"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0000138"],"is_obsolete":false,"name":"decreased protein localization to centromere during mitotic metaphase","synonyms":[{"name":"decreased protein localisation to centromere during mitotic metaphase","type":"exact"},{"name":"decreased protein localisation to chromosome, centromeric region during mitotic metaphase","type":"exact"},{"name":"decreased protein localization to centromere during metaphase during vegetative growth","type":"exact"},{"name":"decreased protein localization to chromosome, centric region during mitotic metaphase","type":"exact"},{"name":"decreased protein localization to chromosome, centromeric region during mitotic metaphase","type":"exact"},{"name":"reduced protein localization to centromere during mitotic metaphase","type":"exact"}],"termid":"FYPO:0003002"}


id: PR:O13298
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- hos2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13298"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone deacetylase phd1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3G9.07c","synonyms":[{"name":"Spom972h-hos2","type":"exact"}],"termid":"PR:O13298"}


id: GO:0018216
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The addition of a methyl group to an arginine residue in a protein.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein methylation","termid":"GO:0006479"},{"relation_name":"is_a","term_name":"peptidyl-arginine modification","termid":"GO:0018195"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-arginine methylation","secondary_identifiers":["GO:0018017"],"termid":"GO:0018216"}


id: FYPO:0003386
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of superoxide dismutase activity is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased catalytic activity","termid":"FYPO:0000662"},{"relation_name":"is_a","term_name":"abnormal superoxide dismutase activity","termid":"FYPO:0003281"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0000654","FYPO:0005447","FYPO:0000707","FYPO:0000298","FYPO:0001985","FYPO:0000652","FYPO:0000002"],"is_obsolete":false,"name":"increased superoxide dismutase activity","termid":"FYPO:0003386"}


id: PBO:0047467
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Fc receptor like 6 pseudogene 1","termid":"PBO:0047467"}


id: GO:0010819
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of T cell chemotaxis. T cell chemotaxis is the directed movement of a T cell in response to an external stimulus.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of lymphocyte chemotaxis","termid":"GO:1901623"},{"relation_name":"is_a","term_name":"regulation of T cell migration","termid":"GO:2000404"},{"relation_name":"regulates","term_name":"T cell chemotaxis","termid":"GO:0010818"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of T cell chemotaxis","termid":"GO:0010819"}


id: GO:0010527
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the frequency, rate or extent of RNA-mediated transposition. RNA-mediated transposition is a type of transpositional recombination which occurs via an RNA intermediate.","definition_xrefs":["GOC:tb","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transposition, RNA-mediated (obsolete GO:0010527)","termid":"GO:0010527"}


id: MONDO:1011409
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Portosystemic shunt that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiovascular disorder, non-human animal","termid":"MONDO:1011306"},{"relation_name":"is_a","term_name":"disorder of development or morphogenesis, non-human animal","termid":"MONDO:1011313"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"portosystemic shunt, non-human animal","secondary_identifiers":["OMIA:000817"],"termid":"MONDO:1011409","xrefs":{"Monarch":{"xref_id":"1011409"}}}


id: GO:0075047
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of symbiont haustorium formation for nutrient acquisition from host. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of formation of structure involved in a symbiotic process","termid":"GO:0044147"},{"relation_name":"is_a","term_name":"regulation of formation by symbiont of haustorium for nutrient acquisition from host","termid":"GO:0075045"},{"relation_name":"negatively_regulates","term_name":"formation of haustorium for nutrient acquisition","termid":"GO:0052094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of formation by symbiont of haustorium for nutrient acquisition from host","termid":"GO:0075047"}


id: GO:0070534
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A protein ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 63 of the ubiquitin monomers, is added to a protein. K63-linked ubiquitination does not target the substrate protein for degradation, but is involved in several pathways, notably as a signal to promote error-free DNA postreplication repair.","definition_xrefs":["GOC:mah","PMID:15556404"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein polyubiquitination","termid":"GO:0000209"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0070647"}],"interesting_parent_ids":["GO:0008150","GO:0070647"],"is_obsolete":false,"name":"protein K63-linked ubiquitination","synonyms":[{"name":"protein K63-linked polyubiquitination","type":"exact"}],"termid":"GO:0070534"}


id: GO:0070072
data:
  {"annotated_genes":["SJAG_00771","SJAG_06514","SJAG_01939","SJAG_05306","SJAG_00301","SJAG_04454"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[64089,64290,67609,102303,110489,116877],"is_not":false,"summary":null,"term":"GO:0070072"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a vacuolar proton-transporting V-type ATPase complex, proton-transporting two-sector ATPase complex that couples ATP hydrolysis to the transport of protons across the vacuolar membrane.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proton-transporting V-type ATPase complex assembly","termid":"GO:0070070"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00301":null,"SJAG_00771":null,"SJAG_01939":null,"SJAG_04454":null,"SJAG_05306":null,"SJAG_06514":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0065003"],"is_obsolete":false,"name":"vacuolar proton-transporting V-type ATPase complex assembly","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null},"synonyms":[{"name":"V-ATPase assembly","type":"broad"},{"name":"V-ATPase complex assembly","type":"broad"}],"termid":"GO:0070072","terms_by_termid":{"GO:0070072":null}}


id: GO:0006505
data:
  {"annotated_genes":["SJAG_03292","SJAG_04975","SJAG_05278","SJAG_01860","SJAG_00295","SJAG_01227","SJAG_06383","SJAG_03115","SJAG_01416","SJAG_03801","SJAG_04924","SJAG_03878","SJAG_05327","SJAG_02804","SJAG_03506","SJAG_02523","SJAG_04881","SJAG_03672","SJAG_00831","SJAG_04337","SJAG_03066","SJAG_06425","SJAG_01570","SJAG_00068","SJAG_00506","SJAG_00846","SJAG_02776","SJAG_04165","SJAG_02913","SJAG_04119","SJAG_02488"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[77991,73476,73849,93322,58340,57869,75867,77491,78204,87751,58330,77820,78230,62702,104090,73068,78565,60781,76793,77812,75896,104028,58226,63357,70170,72157,76777,63750,89876,75301],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006506"},{"annotations":[74087],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006676"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving glycosylphosphatidylinositol anchors, molecular mechanisms for attaching membrane proteins to the lipid bilayer of cell membranes. Structurally they consist of a molecule of phosphatidylinositol to which is linked, via the C-6 hydroxyl of the inositol, a carbohydrate chain. This chain is in turn linked to the protein through an ethanolamine phosphate group, the amino group of which is in amide linkage with the C-terminal carboxyl of the protein chain, the phosphate group being esterified to the C-6 hydroxyl of the terminal mannose of the core carbohydrate chain.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycolipid metabolic process","termid":"GO:0006664"},{"relation_name":"is_a","term_name":"phosphatidylinositol metabolic process","termid":"GO:0046488"}],"gene_count":31,"genes_by_uniquename":{"SJAG_00068":null,"SJAG_00295":null,"SJAG_00506":null,"SJAG_00831":null,"SJAG_00846":null,"SJAG_01227":null,"SJAG_01416":null,"SJAG_01570":null,"SJAG_01860":null,"SJAG_02488":null,"SJAG_02523":null,"SJAG_02776":null,"SJAG_02804":null,"SJAG_02913":null,"SJAG_03066":null,"SJAG_03115":null,"SJAG_03292":null,"SJAG_03506":null,"SJAG_03672":null,"SJAG_03801":null,"SJAG_03878":null,"SJAG_04119":null,"SJAG_04165":null,"SJAG_04337":null,"SJAG_04881":null,"SJAG_04924":null,"SJAG_04975":null,"SJAG_05278":null,"SJAG_05327":null,"SJAG_06383":null,"SJAG_06425":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"GPI anchor metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0046472"],"synonyms":[{"name":"GPI anchor metabolism","type":"exact"},{"name":"GPI/GSI anchor metabolic process","type":"broad"},{"name":"GPI/GSI anchor metabolism","type":"broad"},{"name":"glycosylphosphatidylinositol metabolic process","type":"exact"},{"name":"glycosylphosphatidylinositol metabolism","type":"exact"}],"termid":"GO:0006505","terms_by_termid":{"GO:0006506":null,"GO:0006676":null}}


id: PBO:0004073
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diacylglycerol binding protein Bzz1 (predicted)","termid":"PBO:0004073"}


id: GO:0042904
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of 9-cis-retinoic acid, a metabolically active vitamin A derivative.","definition_xrefs":["GOC:jl","PMID:11279029"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinoic acid biosynthetic process","termid":"GO:0002138"},{"relation_name":"is_a","term_name":"9-cis-retinoic acid metabolic process","termid":"GO:0042905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006629"],"is_obsolete":false,"name":"9-cis-retinoic acid biosynthetic process","synonyms":[{"name":"9-cis-retinoic acid anabolism","type":"exact"},{"name":"9-cis-retinoic acid biosynthesis","type":"exact"},{"name":"9-cis-retinoic acid formation","type":"exact"},{"name":"9-cis-retinoic acid synthesis","type":"exact"}],"termid":"GO:0042904"}


id: GO:0050902
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The activation of loosely bound or rolling leukocytes by signals displayed on blood vessel endothelial cells, which is typically the second step in cellular extravasation.","definition_xrefs":["PMID:14680625","PMID:14708592","PMID:7507411","PMID:8600538","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukocyte activation","termid":"GO:0045321"},{"relation_name":"part_of","term_name":"cellular extravasation","termid":"GO:0045123"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"leukocyte adhesive activation","synonyms":[{"name":"leukocyte adhesive triggering","type":"exact"}],"termid":"GO:0050902"}


id: PBO:0059832
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metal response element binding transcription factor 2","termid":"PBO:0059832"}


id: MONDO:0006392
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A serrated polypoid lesion that arises in the rectum. It rarely produces symptoms. This group includes goblet cell rich, mucin poor, and microvesicular hyperplastic polyps.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyp of rectum","termid":"MONDO:0021398"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"rectal hyperplastic polyp","secondary_identifiers":["NCIT:C5619","UMLS:C1335679","EFO:1000502","MEDGEN:277574"],"synonyms":[{"name":"hyperplastic polyp of rectum","type":"exact"},{"name":"hyperplastic polyp of the rectum","type":"exact"},{"name":"rectal Hp","type":"exact"},{"name":"rectal MP","type":"exact"},{"name":"rectal metaplastic polyp","type":"exact"}],"termid":"MONDO:0006392","xrefs":{"Monarch":{"xref_id":"0006392"}}}


id: GO:0002503
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The binding of a peptide to the antigen binding groove of an MHC class II protein complex.","definition_xrefs":["ISBN:0781735149","PMID:15771591","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide antigen assembly with MHC protein complex","termid":"GO:0002501"},{"relation_name":"part_of","term_name":"MHC class II protein complex assembly","termid":"GO:0002399"},{"relation_name":"part_of","term_name":"antigen processing and presentation of peptide antigen via MHC class II","termid":"GO:0002495"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0065003","GO:0044085"],"is_obsolete":false,"name":"peptide antigen assembly with MHC class II protein complex","termid":"GO:0002503"}


id: MOD:02046
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that contains an L-glutamine residue crosslinked to one or more amino acid residues.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-glutamine residue","termid":"MOD:00907"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"crosslinked L-glutamine residue","synonyms":[{"name":"XlnkGln","type":"exact"}],"termid":"MOD:02046"}


id: PBO:0085542
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein component of the small (40S) ribosomal subunit; interacts with Kti11p; deletion causes hypersensitivity to zymocin; homologous to mammalian ribosomal protein S7, no bacterial homolog; RPS7B has a paralog, RPS7A, that arose from the whole genome duplication; protein abundance increases in response to DNA replication stress","termid":"PBO:0085542"}


id: MONDO:0014029
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any osteogenesis imperfecta in which the cause of the disease is a mutation in the TMEM38B gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"osteogenesis imperfecta and a reduction of bone mineral density.","termid":"MONDO:0800064"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"osteogenesis imperfecta type 14","secondary_identifiers":["GARD:15901","OMIM:615066","MEDGEN:767342","UMLS:C3554428","DOID:0110343"],"synonyms":[{"name":"OI, type 14","type":"related"},{"name":"OI14","type":"exact"},{"name":"TMEM38B osteogenesis imperfecta","type":"exact"},{"name":"osteogenesis imperfecta caused by mutation in TMEM38B","type":"exact"},{"name":"osteogenesis imperfecta type XIV","type":"exact"},{"name":"osteogenesis imperfecta, type 14","type":"related"},{"name":"osteogenesis imperfecta, type XIV","type":"related"}],"termid":"MONDO:0014029","xrefs":{"Monarch":{"xref_id":"0014029"}}}


id: PBO:0046127
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 4 gamma 1","termid":"PBO:0046127"}


id: MONDO:0014914
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any BAFopathy in which the cause of the disease is a mutation in the BCL11A gene.","definition_xrefs":["PMID:30580808","MONDO:patterns/OMIM_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"BAFopathy","termid":"MONDO:0700120"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dias-Logan syndrome","secondary_identifiers":["OMIM:617101","MEDGEN:934800","UMLS:C4310833"],"synonyms":[{"name":"BCL11A-related BAFopathy","type":"exact"},{"name":"BCL11A-related intellectual developmental disorder with persistence of fetal hemoglobin","type":"related"},{"name":"BCL11A-related intellectual developmental disorder with persistence of foetal haemoglobin","type":"related"},{"name":"DILOS","type":"exact"},{"name":"Dias-Logan syndrome","type":"exact"},{"name":"Dias-Logan syndrome; DILOS","type":"exact"},{"name":"intellectual developmental disorder with hereditary persistence of fetal Hemoglobin","type":"related"},{"name":"intellectual developmental disorder with hereditary persistence of foetal Haemoglobin","type":"related"},{"name":"intellectual developmental disorder with persistence of fetal HEMOGLOBIN","type":"related"},{"name":"intellectual developmental disorder with persistence of fetal Hemoglobin","type":"related"},{"name":"intellectual developmental disorder with persistence of foetal HEMOGLOBIN","type":"related"},{"name":"intellectual developmental disorder with persistence of foetal Haemoglobin","type":"related"}],"termid":"MONDO:0014914","xrefs":{"Monarch":{"xref_id":"0014914"}}}


id: MONDO:0003774
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A meningioma that affects the cerebral sulcus.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cerebral meningioma","termid":"MONDO:0003772"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"cerebral convexity meningioma","secondary_identifiers":["UMLS:C0751303","MEDGEN:155844","NCIT:C4959","DOID:6114"],"synonyms":[{"name":"cerebral hemispheric convexity meningioma","type":"exact"}],"termid":"MONDO:0003774","xrefs":{"Monarch":{"xref_id":"0003774"}}}


id: PBO:0068545
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 151, pseudogene","termid":"PBO:0068545"}


id: MONDO:0006421
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A usually polypoid neoplasm that arises from the glandular epithelium of the small intestine. It is characterized by a tubular architectural pattern. The neoplastic glandular cells have dysplastic features.","definition_xrefs":["NCIT:C43552"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenoma of small intestine","termid":"MONDO:0021303"},{"relation_name":"is_a","term_name":"tubular adenoma","termid":"MONDO:0024660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"small intestinal tubular adenoma","secondary_identifiers":["MEDGEN:328036","UMLS:C1710112","EFO:1000538"],"termid":"MONDO:0006421","xrefs":{"Monarch":{"xref_id":"0006421"}}}


id: PBO:0054332
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1725","termid":"PBO:0054332"}


id: PBO:0065355
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PTPN13 like Y-linked pseudogene 5","termid":"PBO:0065355"}


id: FYPO:0004145
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of pyridoxine:NADP 4-dehydrogenase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal oxidoreductase activity","termid":"FYPO:0000689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000654","FYPO:0000707","FYPO:0000661","FYPO:0001985"],"is_obsolete":false,"name":"abnormal pyridoxine:NADP 4-dehydrogenase activity","termid":"FYPO:0004145"}


id: MONDO:0033653
data:
  {"annotated_genes":["SJAG_01190"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86074],"is_not":false,"summary":null,"term":"MONDO:0033653"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial complex IV deficiency, nuclear-type","termid":"MONDO:0033885"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01190":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0004069","MONDO:0005066"],"is_obsolete":false,"name":"mitochondrial complex 4 deficiency, nuclear type 18","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1752734","GARD:16415","DOID:0070503","OMIM:619062","UMLS:C5436720"],"synonyms":[{"name":"MC4DN18","type":"exact"},{"name":"mitochondrial complex IV deficiency, nuclear type 18","type":"exact"}],"termid":"MONDO:0033653","terms_by_termid":{"MONDO:0033653":null},"xrefs":{"Monarch":{"xref_id":"0033653"}}}


id: GO:0038001
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The transfer of information from one cell to another, where the signal travels from the signal-producing cell to the receiving cell by passive diffusion or bulk flow in intercellular fluid. The signaling cell and the receiving cell are usually in the vicinity of each other.","definition_xrefs":["ISBN:3527303782","GOC:mtg_signaling_feb11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell signaling","termid":"GO:0007267"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"paracrine signaling","synonyms":[{"name":"paracrine signalling","type":"exact"}],"termid":"GO:0038001"}


id: MONDO:0019137
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Non-24-hour sleep-wake disorder (non-24 disorder), also known as hypernychthemeral syndrome, is a circadian rhythm sleep disorder characterized by non-synchronization to a 24-hour day leading to insomnia and daytime sleepiness with sometimes severe associated manifestations.","definition_xrefs":["Orphanet:73267"],"direct_ancestors":[{"relation_name":"is_a","term_name":"circadian rhythm sleep disorder","termid":"MONDO:0024361"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-24-hour sleep-wake syndrome","secondary_identifiers":["MEDGEN:148383","NORD:1511","SCTID:230496009","GARD:10949","UMLS:C0751759","ICD10CM:G47.24"],"synonyms":[{"name":"Non-24-Hour Sleep-Wake Disorder","type":"exact"},{"name":"circadian rhythm sleep disorder, free running type","type":"exact"},{"name":"circadian rhythm sleep disorder, free-running type","type":"exact"},{"name":"hypernychthemeral syndrome","type":"exact"},{"name":"non 24 hour sleep wake disorder","type":"related"},{"name":"non-24","type":"exact"}],"termid":"MONDO:0019137","xrefs":{"Monarch":{"xref_id":"0019137"}}}


id: GO:0031891
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type 1 vasoactive intestinal polypeptide receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vasoactive intestinal polypeptide receptor binding","termid":"GO:0031890"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"type 1 vasoactive intestinal polypeptide receptor binding","synonyms":[{"name":"type 1 vasoactive intestinal polypeptide receptor ligand","type":"narrow"},{"name":"type 2 PACAP receptor binding","type":"exact"}],"termid":"GO:0031891"}


id: GO:0003355
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed, self-propelled movement of cilia of inner ear epithelial cells, resulting the aggregation of otolith seed particles.","definition_xrefs":["GOC:krc","PMID:19043402","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cilium movement involved in extracellular fluid movement","termid":"GO:0003351"},{"relation_name":"part_of","term_name":"otolith formation","termid":"GO:0032475"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"cilium movement involved in otolith formation","termid":"GO:0003355"}


id: PBO:0045294
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynamin 1 pseudogene 46","termid":"PBO:0045294"}


id: PBO:0048532
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GEMIN7 antisense RNA 1","termid":"PBO:0048532"}


id: MONDO:0958101
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"breast benign neoplasm","termid":"MONDO:0000620"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lymphocytic mastitis","secondary_identifiers":["Orphanet:653698"],"termid":"MONDO:0958101","xrefs":{"Monarch":{"xref_id":"0958101"}}}


id: PBO:0078684
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Lys (TTT) 17-1","termid":"PBO:0078684"}


id: GO:1903340
data:
  {"annotated_genes":["SJAG_01181","SJAG_04551"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[102466,111311],"is_not":false,"summary":null,"term":"GO:1903340"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cell wall organization or biogenesis.","definition_xrefs":["GOC:TermGenie","GOC:vw","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular process","termid":"GO:0048522"},{"relation_name":"is_a","term_name":"regulation of cell wall organization or biogenesis","termid":"GO:1903338"},{"relation_name":"positively_regulates","term_name":"cell wall organization or biogenesis","termid":"GO:0071554"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01181":null,"SJAG_04551":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0071554"},{"rel_name":"positively_regulates","termid":"GO:0071554"}],"interesting_parent_ids":["GO:0071554","GO:0008150"],"is_obsolete":false,"name":"positive regulation of cell wall organization or biogenesis","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of cell wall organisation or biogenesis","type":"narrow"},{"name":"activation of cell wall organization or biogenesis","type":"narrow"},{"name":"activation of cell wall organization or biogenesis at cellular level","type":"narrow"},{"name":"activation of cellular cell wall organisation or biogenesis","type":"narrow"},{"name":"activation of cellular cell wall organization or biogenesis","type":"narrow"},{"name":"positive regulation of cell wall organisation or biogenesis","type":"exact"},{"name":"positive regulation of cell wall organization or biogenesis at cellular level","type":"exact"},{"name":"positive regulation of cellular cell wall organisation or biogenesis","type":"exact"},{"name":"positive regulation of cellular cell wall organization or biogenesis","type":"exact"},{"name":"up regulation of cell wall organisation or biogenesis","type":"exact"},{"name":"up regulation of cell wall organization or biogenesis","type":"exact"},{"name":"up regulation of cell wall organization or biogenesis at cellular level","type":"exact"},{"name":"up regulation of cellular cell wall organisation or biogenesis","type":"exact"},{"name":"up regulation of cellular cell wall organization or biogenesis","type":"exact"},{"name":"up-regulation of cell wall organisation or biogenesis","type":"exact"},{"name":"up-regulation of cell wall organization or biogenesis","type":"exact"},{"name":"up-regulation of cell wall organization or biogenesis at cellular level","type":"exact"},{"name":"up-regulation of cellular cell wall organisation or biogenesis","type":"exact"},{"name":"up-regulation of cellular cell wall organization or biogenesis","type":"exact"},{"name":"upregulation of cell wall organisation or biogenesis","type":"exact"},{"name":"upregulation of cell wall organization or biogenesis","type":"exact"},{"name":"upregulation of cell wall organization or biogenesis at cellular level","type":"exact"},{"name":"upregulation of cellular cell wall organisation or biogenesis","type":"exact"},{"name":"upregulation of cellular cell wall organization or biogenesis","type":"exact"}],"termid":"GO:1903340","terms_by_termid":{"GO:1903340":null}}


id: PBO:0013816
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by S. cerevisiae TOP2","termid":"PBO:0013816"}


id: PBO:0090322
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sec14 cytosolic factor family, phospholipid-intermembrane transfer protein Spo20/Sec14","termid":"PBO:0090322"}


id: MONDO:0013644
data:
  {"annotated_genes":["SJAG_02286"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86147],"is_not":false,"summary":null,"term":"MONDO:0013644"}]},"cv_name":"mondo","definition":"Any Charcot-Marie-Tooth disease in which the cause of the disease is a mutation in the DYNC1H1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Charcot-Marie-Tooth disease type 2","termid":"MONDO:0018993"},{"relation_name":"is_a","term_name":"dyneinopathy","termid":"MONDO:1040031"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02286":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005244"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0005328","MONDO:0005244"],"is_obsolete":false,"name":"Charcot-Marie-Tooth disease axonal type 2O","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:12434","DOID:0110175","MEDGEN:481850","UMLS:C3280220","Orphanet:284232","OMIM:614228"],"synonyms":[{"name":"CMT2O","type":"exact"},{"name":"Charcot-Marie-Tooth disease caused by mutation in DYNC1H1","type":"exact"},{"name":"Charcot-Marie-Tooth disease type 2O","type":"related"},{"name":"Charcot-Marie-Tooth disease, axonal, autosomal dominant, type 2O","type":"related"},{"name":"Charcot-Marie-Tooth disease, axonal, type 20","type":"exact"},{"name":"Charcot-Marie-Tooth disease, axonal, type 2O","type":"related"},{"name":"Charcot-Marie-Tooth neuropathy axonal type 2O","type":"exact"},{"name":"Charcot-Marie-Tooth neuropathy, axonal, type 2O","type":"related"},{"name":"DYNC1H1 Charcot-Marie-Tooth disease","type":"exact"},{"name":"autosomal dominant Charcot-Marie-Tooth disease type 2O","type":"exact"},{"name":"autosomal dominant axonal Charcot-Marie-Tooth disease type 2O","type":"exact"}],"termid":"MONDO:0013644","terms_by_termid":{"MONDO:0013644":null},"xrefs":{"Monarch":{"xref_id":"0013644"}}}


id: GO:0009976
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reactions: delta-tocopherol = 2-methyl-6-phytyl-1,4-benzene-1,4-diol, gamma-tocopherol = 2,3-dimethyl-6-phytylbenzene-1,4-diol. delta-tocotrienol = 6-geranylgeranyl-2-methylbenzene-1,4-diol gamma-tocotrienol, and = 6-geranylgeranyl-2,3-dimethylbenzene-1,4-diol.","definition_xrefs":["PMID:12213958","EC:5.5.1.24"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclase activity","termid":"GO:0009975"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0009975"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0009975","GO:0003824"],"is_obsolete":false,"name":"tocopherol cyclase activity","termid":"GO:0009976"}


id: GO:0005075
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete pathway-specific SMAD protein (obsolete GO:0005075)","synonyms":[{"name":"pathway-specific SMAD protein","type":"exact"}],"termid":"GO:0005075"}


id: GO:2000037
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of stomatal complex patterning.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of multicellular organismal process","termid":"GO:0051239"},{"relation_name":"regulates","term_name":"stomatal complex patterning","termid":"GO:0010375"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of stomatal complex patterning","termid":"GO:2000037"}


id: PBO:0016094
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Chromosome Segregation Impaired","termid":"PBO:0016094"}


id: MONDO:1011626
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system disorder, non-human animal","termid":"MONDO:1011336"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyperkinesis, non-human animal","secondary_identifiers":["OMIA:000503"],"termid":"MONDO:1011626","xrefs":{"Monarch":{"xref_id":"1011626"}}}


id: GO:0032683
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of connective tissue growth factor production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokine production","termid":"GO:0001818"},{"relation_name":"is_a","term_name":"regulation of connective tissue growth factor production","termid":"GO:0032643"},{"relation_name":"negatively_regulates","term_name":"connective tissue growth factor production","termid":"GO:0032601"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of connective tissue growth factor production","secondary_identifiers":["GO:0045421"],"synonyms":[{"name":"down regulation of connective tissue growth factor production","type":"exact"},{"name":"down-regulation of connective tissue growth factor production","type":"exact"},{"name":"downregulation of connective tissue growth factor production","type":"exact"},{"name":"inhibition of connective tissue growth factor production","type":"narrow"},{"name":"negative regulation of CCN2 production","type":"exact"},{"name":"negative regulation of CTGF production","type":"exact"},{"name":"negative regulation of Fisp12 production","type":"exact"},{"name":"negative regulation of Hcs24 production","type":"exact"},{"name":"negative regulation of IGFBP8 production","type":"exact"},{"name":"negative regulation of connective tissue growth factor biosynthetic process","type":"narrow"},{"name":"negative regulation of hypertrophic chondrocyte-specific gene product 24 production","type":"exact"}],"termid":"GO:0032683"}


id: FYPO:0004659
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins, or of specific protein sites, does not occur during a cellular response to ultraviolet light.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein phosphorylation during vegetative growth","termid":"FYPO:0002033"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0002494","FYPO:0001320","FYPO:0002274","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abolished protein phosphorylation during cellular response to UV","synonyms":[{"name":"abolished protein phosphorylation during cellular response to UV during mitotic cell cycle","type":"related"},{"name":"abolished protein phosphorylation during cellular response to UV during vegetative growth","type":"exact"},{"name":"abolished protein phosphorylation during cellular response to ultraviolet light","type":"exact"},{"name":"protein phosphorylation abolished during cellular response to UV","type":"exact"}],"termid":"FYPO:0004659"}


id: GO:2000109
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of macrophage apoptotic process.","definition_xrefs":["GOC:BHF","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of myeloid cell apoptotic process","termid":"GO:0033032"},{"relation_name":"is_a","term_name":"regulation of leukocyte apoptotic process","termid":"GO:2000106"},{"relation_name":"regulates","term_name":"macrophage apoptotic process","termid":"GO:0071888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of macrophage apoptotic process","synonyms":[{"name":"regulation of AICD","type":"related"},{"name":"regulation of activation-induced cell death","type":"related"},{"name":"regulation of macrophage apoptosis","type":"narrow"}],"termid":"GO:2000109"}


id: PBO:0067606
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 774, pseudogene","termid":"PBO:0067606"}


id: PBO:0047889
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, aphidicolin type, common, fra(6)(p22.2)","termid":"PBO:0047889"}


id: GO:0033856
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1-deoxy-D-xylulose 5-phosphate + 3-amino-2-oxopropyl phosphate = 2 H2O + H+ + phosphate + pyridoxine 5'-phosphate.","definition_xrefs":["RHEA:15265"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity, transferring nitrogenous groups","termid":"GO:0016769"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016740","GO:0016769"],"is_obsolete":false,"name":"pyridoxine 5'-phosphate synthase activity","secondary_identifiers":["KEGG_REACTION:R05838","MetaCyc:PDXJ-RXN","EC:2.6.99.2"],"synonyms":[{"name":"1-deoxy-D-xylulose-5-phosphate:3-amino-2-oxopropyl phosphate 3-amino-2-oxopropyltransferase (phosphate-hydrolysing; cyclizing) activity","type":"related"},{"name":"PNP synthase activity","type":"related"},{"name":"pyridoxine 5-phosphate phospho lyase activity","type":"related"}],"termid":"GO:0033856"}


id: PBO:0109402
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed transcript, Y-linked 29, pseudogene","termid":"PBO:0109402"}


id: MONDO:0002453
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pathological processes involving the vestibulocochlear nerve; brainstem; or central nervous system. When hearing loss is due to retrocochlear pathology, it is called retrocochlear hearing loss.","definition_xrefs":["MESH:D012181"],"direct_ancestors":[{"relation_name":"is_a","term_name":"auditory system disorder","termid":"MONDO:0002409"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retrocochlear disease","secondary_identifiers":["DOID:2889","MEDGEN:11216","UMLS:C0035352"],"termid":"MONDO:0002453","xrefs":{"Monarch":{"xref_id":"0002453"}}}


id: PBO:0045466
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dopamine receptor D3","termid":"PBO:0045466"}


id: PR:000050511
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A meiotic recombination protein rec8 (Schizosaccharomyces pombe) that has been phosphorylated at the position equivalent to Ser-450 of the amino acid sequence represented by UniProtKB:P36626. Example: UniProtKB:P36626, Ser-450, MOD:00046.","definition_xrefs":["PRO:DAN","PomBase:VW","PMID:33888556"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiotic recombination protein rec8 (Schizosaccharomyces pombe)","termid":"PR:000050510"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rec8/Phos(S450)","pombase_gene_id":"SPBC29A10.14","synonyms":[{"name":"PomBase_original_PRO_term_name: meiotic recombination protein rec8 phosphorylated 1 (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-rec8/Phos:1","type":"exact"},{"name":"UniProtKB:P36626, Ser-450, MOD:00046","type":"narrow"},{"name":"rec8/Phos(S450)","type":"exact"}],"termid":"PR:000050511"}


id: PBO:0054398
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1794","termid":"PBO:0054398"}


