# terms

id: GO:0072106
data:
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id: PBO:0031109
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_microtubule-destabilizing_substance","termid":"PBO:0031109"}


id: GO:0097651
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A phosphatidylinositol 3-kinase complex that contains a catalytic and a regulatory subunit of a phosphatidylinositol 3-kinase (PI3K) enzyme, plus one or more adaptor proteins. Class I PI3Ks phosphorylate phosphatidylinositol [PI], phosphatidylinositol-4-phosphate [PI(4)P] and phosphatidylinositol-4,5-bisphosphate [PI(4,5)P2], and are divided into subclasses A and B according to the type of adaptor subunit with which they associate. The class I PI3K subfamily of genes comprises members in vertebrates, worm and fly, but none in yeast.","definition_xrefs":["GOC:ha","PMID:24587488"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylinositol 3-kinase complex","termid":"GO:0005942"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"phosphatidylinositol 3-kinase complex, class I","synonyms":[{"name":"class I PI3K complex","type":"exact"},{"name":"class I phosphatidylinositol 3-kinase complex","type":"exact"}],"termid":"GO:0097651"}


id: GO:1905597
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of low-density lipoprotein particle receptor binding.","definition_xrefs":["GOC:BHF","GOC:TermGenie","GO_REF:0000059","GOC:nc","PMID:22848640"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of receptor binding","termid":"GO:1900122"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of low-density lipoprotein particle receptor binding","synonyms":[{"name":"activation of LDL receptor binding","type":"narrow"},{"name":"activation of low-density lipoprotein particle receptor binding","type":"narrow"},{"name":"activation of low-density lipoprotein receptor binding","type":"narrow"},{"name":"positive regulation of LDL receptor binding","type":"exact"},{"name":"positive regulation of low-density lipoprotein receptor binding","type":"exact"},{"name":"up regulation of LDL receptor binding","type":"exact"},{"name":"up regulation of low-density lipoprotein particle receptor binding","type":"exact"},{"name":"up regulation of low-density lipoprotein receptor binding","type":"exact"},{"name":"up-regulation of LDL receptor binding","type":"exact"},{"name":"up-regulation of low-density lipoprotein particle receptor binding","type":"exact"},{"name":"up-regulation of low-density lipoprotein receptor binding","type":"exact"},{"name":"upregulation of LDL receptor binding","type":"exact"},{"name":"upregulation of low-density lipoprotein particle receptor binding","type":"exact"},{"name":"upregulation of low-density lipoprotein receptor binding","type":"exact"}],"termid":"GO:1905597"}


id: MONDO:0001706
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Sarcoidosis of the cerebrum.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"brain disorder","termid":"MONDO:0005560"},{"relation_name":"is_a","term_name":"neurosarcoidosis","termid":"MONDO:0045047"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cerebral sarcoidosis","secondary_identifiers":["NCIT:C35441","DOID:13403","UMLS:C0398676","MEDGEN:140767","SCTID:111936002"],"synonyms":[{"name":"cerebral sarcoidosis","type":"exact"},{"name":"sarcoidosis of telencephalon","type":"exact"},{"name":"telencephalon sarcoidosis","type":"exact"}],"termid":"MONDO:0001706","xrefs":{"Monarch":{"xref_id":"0001706"}}}


id: GO:0010604
data:
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id: PBO:0069549
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 820, pseudogene","termid":"PBO:0069549"}


id: GO:1900319
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id: GO:1901071
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id: GO:0070699
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  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type II activin receptor.","definition_xrefs":["GOC:BHF","GOC:vk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"activin receptor binding","termid":"GO:0070697"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"type II activin receptor binding","termid":"GO:0070699"}


id: PR:O13702
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  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A glycerol dehydrogenase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00898","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycerol dehydrogenase 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC13F5.03c","secondary_identifiers":["UniProtKB:O13702"],"synonyms":[{"name":"GDH (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"GLDH (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-gldA","type":"exact"}],"termid":"PR:O13702"}


id: PBO:0110491
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L28 pseudogene 6","termid":"PBO:0110491"}


id: PBO:0084728
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial inner membrane protein required for complex IV assembly; associates with complex IV assembly intermediates and complex III/complex IV supercomplexes; similar to human SURF1 involved in Leigh Syndrome; complex IV is also known as cytochrome c oxidase","termid":"PBO:0084728"}


id: GO:0018492
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  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: CO + H2O + acceptor = CO2 + reduced acceptor.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete carbon-monoxide dehydrogenase (acceptor) activity (obsolete GO:0018492)","synonyms":[{"name":"carbon monoxide dehydrogenase activity","type":"broad"}],"termid":"GO:0018492"}


id: FYPO:0006127
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  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which protein oligomerization is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein oligomerization","termid":"FYPO:0005220"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"increased protein oligomerization","synonyms":[{"name":"increased protein oligomerization during mitotic cell cycle","type":"related"},{"name":"increased protein oligomerization during vegetative growth","type":"exact"}],"termid":"FYPO:0006127"}


id: GO:2001128
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a methane from a methylamine.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methanogenesis","termid":"GO:0015948"},{"relation_name":"is_a","term_name":"methylamine metabolic process","termid":"GO:0030416"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006091"],"is_obsolete":false,"name":"methane biosynthetic process from methylamine","termid":"GO:2001128"}


id: PBO:0050386
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A3 pseudogene 10","termid":"PBO:0050386"}


id: PR:O13834
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  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ptr1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13834"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"E3 ubiquitin-protein ligase ptr1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC19D5.04","synonyms":[{"name":"Spom972h-ptr1","type":"exact"},{"name":"poly(A)+ RNA transport protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13834"}


id: PBO:0054622
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2027","termid":"PBO:0054622"}


id: PBO:0001728
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"High Osmolarity Sensitive","termid":"PBO:0001728"}


id: PBO:0052829
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 222","termid":"PBO:0052829"}


id: GO:0080104
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  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-methylthiopropyl-glucosinolate = 5-methylsulfinylpropyl-glucosinolate.","definition_xrefs":["PMID:18799661"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"5-methylthiopropyl glucosinolate S-oxygenase activity","termid":"GO:0080104"}


id: GO:0002146
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a steroid hormone receptor into the nucleus.","definition_xrefs":["GOC:hjd"],"gene_count":0,"genotype_count":0,"name":"obsolete steroid hormone receptor import into nucleus (obsolete GO:0002146)","synonyms":[{"name":"steroid hormone receptor nuclear translocation","type":"narrow"}],"termid":"GO:0002146"}


id: FYPO:0001037
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  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population growth phenotype in which vegetative cells grow normally (i.e. indistinguishably from wild type) during a cellular response to salt stress.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal growth during cellular response to osmotic stress","termid":"FYPO:0001021"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002060"}],"interesting_parent_ids":["FYPO:0002060","FYPO:0002057","FYPO:0000003","FYPO:0002058","FYPO:0000139","FYPO:0000257"],"is_obsolete":false,"name":"normal growth during cellular response to salt stress","synonyms":[{"name":"normal cell population growth during cellular response to ionic osmotic stress","type":"exact"},{"name":"normal cell population growth during cellular response to salt stress","type":"exact"},{"name":"normal cellular response to salt stress","type":"related"},{"name":"normal cellular salinity response","type":"related"},{"name":"normal vegetative cell population growth during cellular response to salt stress","type":"exact"}],"termid":"FYPO:0001037"}


id: PBO:0003172
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"isopentenyl-diphosphate delta-isomerase Idi1","termid":"PBO:0003172"}


id: MONDO:0009784
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  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ophthalmoplegic neuromuscular disorder with abnormal mitochondria","secondary_identifiers":["MESH:C564925","UMLS:C1850302","OMIM:258470","MEDGEN:340508"],"synonyms":[{"name":"ophthalmoplegic neuromuscular disorder with abnormal mitochondria","type":"exact"}],"termid":"MONDO:0009784","xrefs":{"Monarch":{"xref_id":"0009784"}}}


id: PBO:0051474
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin lambda variable (IV)-64 (pseudogene)","termid":"PBO:0051474"}


id: PBO:0073466
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sideroflexin 2","termid":"PBO:0073466"}


id: PBO:0088052
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ubiquitin-like protein involved in thiolation of cytoplasmic tRNAs; receives sulfur from the E1-like enzyme Uba4p and transfers it to tRNA; also functions as a protein tag with roles in nutrient sensing and oxidative stress response","termid":"PBO:0088052"}


id: PBO:0077871
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TPM4 pseudogene 2","termid":"PBO:0077871"}


id: PBO:0063381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"programmed cell death 1 ligand 2","termid":"PBO:0063381"}


id: PBO:0051241
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable (II)-53-1 (pseudogene)","termid":"PBO:0051241"}


id: PBO:0086672
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; identified by fungal homology comparisons and RT-PCR; partially overlaps RND5-3; YLR156C-A has a paralog, YLR159C-A, that arose from a segmental duplication","termid":"PBO:0086672"}


id: MONDO:0006489
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A primary malignant neoplasm of the vagina composed of malignant melanocytes.","definition_xrefs":["NCIT:C27394"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mucosal melanoma","termid":"MONDO:0000544"},{"relation_name":"is_a","term_name":"vaginal neoplasm","termid":"MONDO:0021050"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vaginal melanoma","secondary_identifiers":["EFO:1000619","ONCOTREE:VMM","MEDGEN:378335","UMLS:C2004576"],"synonyms":[{"name":"melanoma (disease) of vagina","type":"exact"},{"name":"melanoma of the vagina","type":"exact"},{"name":"melanoma of vagina","type":"exact"},{"name":"mucosal melanoma of the vulva/vagina","type":"broad"},{"name":"vagina melanoma","type":"exact"},{"name":"vagina melanoma (disease)","type":"exact"},{"name":"vaginal melanoma","type":"exact"}],"termid":"MONDO:0006489","xrefs":{"Monarch":{"xref_id":"0006489"}}}


id: PBO:0071745
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L41 pseudogene 1","termid":"PBO:0071745"}


id: PBO:0005212
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uracil DNA N-glycosylase Ung1","termid":"PBO:0005212"}


id: MONDO:0004353
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A non-invasive, papillary epithelial neoplasm that arises from the epithelium of the extrahepatic bile ducts.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bile duct papillary neoplasm","termid":"MONDO:0003455"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0002515","MONDO:0004335"],"is_obsolete":false,"name":"extrahepatic biliary papillomatosis","secondary_identifiers":["MEDGEN:232484","NCIT:C7124","UMLS:C1333511","DOID:7752"],"synonyms":[{"name":"extrahepatic bile duct papillary neoplasm","type":"exact"},{"name":"extrahepatic bile duct papillomatosis","type":"exact"},{"name":"extrahepatic biliary papillomatosis","type":"exact"}],"termid":"MONDO:0004353","xrefs":{"Monarch":{"xref_id":"0004353"}}}


id: MONDO:0007512
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ectodermal dysplasia syndrome with distinctive facial appearance and preaxial polydactyly of feet","secondary_identifiers":["UMLS:C1851851","MEDGEN:342107","OMIM:129540","MESH:C565067"],"synonyms":[{"name":"ectodermal dysplasia syndrome with distinctive facial appearance and preaxial polydactyly of feet","type":"exact"}],"termid":"MONDO:0007512","xrefs":{"Monarch":{"xref_id":"0007512"}}}


id: PBO:0069319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 577, pseudogene","termid":"PBO:0069319"}


id: MONDO:0016267
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Undifferentiated carcinoma of the corpus uteri is a rare cancer of corpus uteri presenting as a large, polypoid, intraluminal mass with necrosis, composed of small to intermediate-size, relatively uniform, dyshesive cells displaying no differentiation. It usually presents with dysfunctional bleeding or vaginal discharge and, less often, abdominal pain. Association with Lynch syndrome was reported.","definition_xrefs":["Orphanet:213721"],"direct_ancestors":[{"relation_name":"is_a","term_name":"uterine carcinoma","termid":"MONDO:0005213"},{"relation_name":"is_a","term_name":"undifferentiated carcinoma","termid":"MONDO:0005617"},{"relation_name":"is_a","term_name":"uterine corpus cancer","termid":"MONDO:0006003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"undifferentiated carcinoma of the corpus uteri","secondary_identifiers":["GARD:20480","MEDGEN:1638762","ICD10CM:C54.9","UMLS:C4707822"],"synonyms":[{"name":"body of uterus undifferentiated carcinoma","type":"exact"},{"name":"endometrial undifferentiated carcinoma","type":"related"}],"termid":"MONDO:0016267","xrefs":{"Monarch":{"xref_id":"0016267"}}}


id: PBO:0062369
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily A member 5","termid":"PBO:0062369"}


id: PBO:0064838
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PPP1R12A antisense RNA 1","termid":"PBO:0064838"}


id: PBO:0027020
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-phytochelatin_absent_from_vacuole","termid":"PBO:0027020"}


id: PBO:0071048
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 50","termid":"PBO:0071048"}


id: PBO:0049459
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycogenin 2","termid":"PBO:0049459"}


id: FYPO:0006153
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which DNA binding at a STREP motif by a gene product does not occur, when a gene or the bound DNA sequence is mutated. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished DNA binding","termid":"FYPO:0000659"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000653"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000653","FYPO:0000707","FYPO:0000652"],"is_obsolete":false,"name":"abolished DNA binding at STREP motif","synonyms":[{"name":"DNA binding at STREP motif abolished","type":"exact"},{"name":"STREP motif binding abolished","type":"exact"},{"name":"abolished DNA binding at stress-starvation response element of Schizosaccharomyces pombe","type":"exact"}],"termid":"FYPO:0006153"}


id: PBO:0078321
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor delta joining 3","termid":"PBO:0078321"}


id: PR:Q9P6S0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A mucin-22 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04524","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell agglutination protein 1742.01 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1742.01","secondary_identifiers":["UniProtKB:Q9P6S0"],"synonyms":[{"name":"Spom972h-MUC22","type":"exact"}],"termid":"PR:Q9P6S0"}


id: MONDO:0007290
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any cataract (disease) in which the cause of the disease is a mutation in the HSF4 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"early-onset non-syndromic cataract","termid":"MONDO:0011060"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"cataract 5 multiple types","secondary_identifiers":["UMLS:C0266537","MEDGEN:78608","OMIM:116800","MESH:C535342","DOID:0110255"],"synonyms":[{"name":"CTRCT5","type":"exact"},{"name":"HSF4 cataract (disease)","type":"exact"},{"name":"cataract (disease) caused by mutation in HSF4","type":"exact"},{"name":"cataract 5, multiple types","type":"related"},{"name":"cataract, Marner type","type":"related"},{"name":"cataract, lamellar","type":"related"}],"termid":"MONDO:0007290","xrefs":{"Monarch":{"xref_id":"0007290"}}}


id: GO:0022400
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of opsin-mediated signaling.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of G protein-coupled receptor signaling pathway","termid":"GO:0008277"},{"relation_name":"is_a","term_name":"regulation of response to external stimulus","termid":"GO:0032101"},{"relation_name":"regulates","term_name":"G protein-coupled opsin signaling pathway","termid":"GO:0016056"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of opsin-mediated signaling pathway","secondary_identifiers":["Reactome:R-HSA-2514859"],"synonyms":[{"name":"regulation of rhodopsin mediated signaling pathway","type":"exact"},{"name":"regulation of rhodopsin mediated signalling","type":"exact"},{"name":"regulation of rhodopsin-mediated signaling pathway","type":"narrow"}],"termid":"GO:0022400"}


id: MONDO:0035002
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete isolated inherited retinal disorder (obsolete MONDO:0035002)","secondary_identifiers":["Orphanet:520817"],"termid":"MONDO:0035002","xrefs":{"Monarch":{"xref_id":"0035002"}}}


id: MONDO:0002296
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete glomus tumor (obsolete MONDO:0002296)","termid":"MONDO:0002296","xrefs":{"Monarch":{"xref_id":"0002296"}}}


id: GO:0045321
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A change in morphology and behavior of a leukocyte resulting from exposure to a specific antigen, mitogen, cytokine, cellular ligand, or soluble factor.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell activation","termid":"GO:0001775"},{"relation_name":"is_a","term_name":"immune system process","termid":"GO:0002376"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"leukocyte activation","secondary_identifiers":["Wikipedia:Immunologic_activation"],"synonyms":[{"name":"immune cell activation","type":"exact"},{"name":"leucocyte activation","type":"exact"}],"termid":"GO:0045321"}


id: MONDO:0006593
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplastic process characterized by a diffuse poorly circumscribed overgrowth of adipose tissue in the pelvic region. Clinical presentation includes complaints of back and abdominal pain, urinary frequency, perineal pain and constipation. It predominately affects black males.","definition_xrefs":["NCIT:C27486"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipomatosis","termid":"MONDO:0006574"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pelvic lipomatosis","secondary_identifiers":["EFO:1000748","UMLS:C0406608","DOID:3927","MEDGEN:96064","MESH:C535549"],"synonyms":[{"name":"Excess of mature unencapsulated fatty tissue in the pelvis","type":"related"},{"name":"pelvic lipomatosis","type":"exact"},{"name":"pelvic lipomatosis (morphologic abnormality)","type":"exact"}],"termid":"MONDO:0006593","xrefs":{"Monarch":{"xref_id":"0006593"}}}


id: MONDO:0006291
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A jugulotympanic paraganglioma that metastasizes to other anatomic sites.","definition_xrefs":["NCIT:C4623"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vascular cancer","termid":"MONDO:0002095"},{"relation_name":"is_a","term_name":"skull cancer","termid":"MONDO:0002132"},{"relation_name":"is_a","term_name":"central nervous system cancer","termid":"MONDO:0002714"},{"relation_name":"is_a","term_name":"vein disorder","termid":"MONDO:0004634"},{"relation_name":"is_a","term_name":"jugulotympanic paraganglioma","termid":"MONDO:0021064"},{"relation_name":"is_a","term_name":"malignant endocrine neoplasm","termid":"MONDO:0021069"},{"relation_name":"is_a","term_name":"peripheral nervous system cancer","termid":"MONDO:0021089"},{"relation_name":"is_a","term_name":"vascular bone neoplasm","termid":"MONDO:0024499"},{"relation_name":"is_a","term_name":"neurovascular disorder","termid":"MONDO:0043218"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"malignant jugulotympanic paraganglioma","secondary_identifiers":["MEDGEN:87584","UMLS:C0347856"],"synonyms":[{"name":"cancer of jugular body","type":"exact"},{"name":"jugular body cancer","type":"exact"},{"name":"malignant glomus jugulare neoplasm","type":"exact"},{"name":"malignant glomus jugulare tumor","type":"exact"},{"name":"malignant glomus jugulare tumour","type":"exact"},{"name":"malignant jugular body neoplasm","type":"exact"},{"name":"malignant jugulotympanic paraganglioma","type":"exact"},{"name":"malignant neoplasm of glomus jugulare","type":"exact"},{"name":"malignant neoplasm of jugular body","type":"exact"},{"name":"malignant neoplasm of the glomus jugulare","type":"exact"},{"name":"malignant tumor of glomus jugulare","type":"exact"},{"name":"malignant tumor of the glomus jugulare","type":"exact"},{"name":"malignant tumour of glomus jugulare","type":"exact"},{"name":"malignant tumour of the glomus jugulare","type":"exact"}],"termid":"MONDO:0006291","xrefs":{"Monarch":{"xref_id":"0006291"}}}


id: MONDO:0019458
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare acute myeloid leukemia in which the immature cells differentiate towards basophils.","definition_xrefs":["NCIT:C3164"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"bilineal acute myeloid leukemia","termid":"MONDO:0011118"},{"relation_name":"is_a","term_name":"acute myeloid leukemia by FAB classification","termid":"MONDO:0015667"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046","MONDO:0004992"],"is_obsolete":false,"name":"acute basophilic leukemia","secondary_identifiers":["icd11.foundation:1632520399","Orphanet:86849","UMLS:C0023437","ICDO:9870/3","SCTID:307592006","DOID:0080795","EFO:0003029","MESH:D015471","MEDGEN:7314","GARD:19071","ONCOTREE:ABL"],"synonyms":[{"name":"basophilic leukaemia","type":"exact"},{"name":"basophilic leukemia","type":"exact"},{"name":"leukaemia basophilic","type":"exact"},{"name":"leukemia basophilic","type":"exact"}],"termid":"MONDO:0019458","xrefs":{"Monarch":{"xref_id":"0019458"}}}


id: PBO:0071802
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulation of nuclear pre-mRNA domain containing 2","termid":"PBO:0071802"}


id: PBO:0085310
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phosphatidate cytidylyltransferase (CDP-diglyceride synthetase); an enzyme that catalyzes that conversion of CTP + phosphate into diphosphate + CDP-diaclglyerol, a critical step in the synthesis of all major yeast phospholipids; human homolog CDS1 can complement yeast cds1 null mutant","termid":"PBO:0085310"}


id: MONDO:0024643
data:
  {"annotated_genes":["SJAG_03081"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86684],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0859173"}]},"cv_name":"mondo","definition":"A disorder that affects the muscle tissue of the heart. Representative examples include myocardial infarction, myocarditis, and cardiomyopathy.","definition_xrefs":["NCIT:C35544"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heart disorder","termid":"MONDO:0005267"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03081":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"myocardial disorder","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:469033","SCTID:57809008","UMLS:C3241958"],"synonyms":[{"name":"disease of myocardium","type":"exact"},{"name":"disease or disorder of myocardium","type":"exact"},{"name":"disorder of heart muscle","type":"related"},{"name":"disorder of myocardium","type":"exact"},{"name":"myocardial disease","type":"exact"},{"name":"myocardial disorder","type":"exact"},{"name":"myocardium disease","type":"exact"},{"name":"myocardium disease or disorder","type":"exact"}],"termid":"MONDO:0024643","terms_by_termid":{"MONDO:0859173":null},"xrefs":{"Monarch":{"xref_id":"0024643"}}}


id: MONDO:0019252
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete other metabolic disease with skin involvement (obsolete MONDO:0019252)","secondary_identifiers":["Orphanet:79217"],"termid":"MONDO:0019252","xrefs":{"Monarch":{"xref_id":"0019252"}}}


id: PBO:0110500
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STMN3 pseudogene 1","termid":"PBO:0110500"}


id: MONDO:0018844
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Urachal cyst is a congenital urachal anomaly characterized by a failure of complete closure of the urachus, in which both ends are closed but the central lumen remains patent. It is typically asymptomatic but may become clinically significant when infected, presenting as a mass in the umbilical region accompanied by abdominal pain and fever.","definition_xrefs":["Orphanet:488"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital urachal anomaly","termid":"MONDO:0018565"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"urachal cyst","secondary_identifiers":["MedDRA:10065375","SCTID:17234001","HP:0012618","NCIT:C85216","GARD:5425","MEDGEN:21770","icd11.foundation:1125432593","UMLS:C0041915","MESH:D014496"],"synonyms":[{"name":"urachal cyst","type":"exact"},{"name":"urachal cyst (disease)","type":"exact"}],"termid":"MONDO:0018844","xrefs":{"Monarch":{"xref_id":"0018844"}}}


id: PBO:0083795
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential protein of unknown function; exhibits variable expression during colony morphogenesis; overexpression permits survival without protein phosphatase 2A, inhibits growth, and induces a filamentous phenotype; PAM1 has a paralog, SVL3, that arose from the whole genome duplication","termid":"PBO:0083795"}


id: MONDO:0020209
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare hyperopia and astigmatism (obsolete MONDO:0020209)","secondary_identifiers":["Orphanet:98621"],"termid":"MONDO:0020209","xrefs":{"Monarch":{"xref_id":"0020209"}}}


id: GO:1904345
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of gastric mucosal blood circulation.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:10807413"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of blood circulation","termid":"GO:1903523"},{"relation_name":"is_a","term_name":"regulation of gastric mucosal blood circulation","termid":"GO:1904344"},{"relation_name":"negatively_regulates","term_name":"gastric mucosal blood circulation","termid":"GO:1990768"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of gastric mucosal blood circulation","synonyms":[{"name":"down regulation of gastric mucosal blood circulation","type":"exact"},{"name":"down regulation of stomach mucosal blood circulation","type":"exact"},{"name":"down-regulation of gastric mucosal blood circulation","type":"exact"},{"name":"down-regulation of stomach mucosal blood circulation","type":"exact"},{"name":"downregulation of gastric mucosal blood circulation","type":"exact"},{"name":"downregulation of stomach mucosal blood circulation","type":"exact"},{"name":"inhibition of gastric mucosal blood circulation","type":"narrow"},{"name":"inhibition of stomach mucosal blood circulation","type":"narrow"},{"name":"negative regulation of stomach mucosal blood circulation","type":"exact"}],"termid":"GO:1904345"}


id: PBO:0088077
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ubiquitin-specific protease that cleaves Ub-protein fusions; interacts with cofactor Bre5p to regulate transport between ER and Golgi, deubiquitinating COPII and COPI proteins, Sec23p and Sec27p; mediates steady-state retention of Golgi membrane proteins with Bre5p; phosphorylation (S695) by Hog1p regulates transcriptional activation by osmostress; inhibits Ras/PKA signaling through Ira2p; inhibits silencing; role in ribophagy; protein abundance increases in response to DNA replication stress","termid":"PBO:0088077"}


id: GO:0140499
data:
  {"annotated_genes":["SJAG_04259","SJAG_02169","SJAG_01679","SJAG_02336","SJAG_03681","SJAG_00883","SJAG_01297","SJAG_03353","SJAG_02451","SJAG_03126"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94523],"is_not":false,"summary":null,"term":"GO:0140499"},{"annotations":[112292,99912,116229,114598,107552,104210,114112,108574,91047],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902426"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of negative regulation of mitotic spindle assembly checkpoint signaling.","definition_xrefs":["PMID:28017606"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell cycle process","termid":"GO:0010948"},{"relation_name":"is_a","term_name":"positive regulation of mitotic metaphase/anaphase transition","termid":"GO:0045842"},{"relation_name":"is_a","term_name":"positive regulation of mitotic sister chromatid segregation","termid":"GO:0062033"},{"relation_name":"is_a","term_name":"negative regulation of spindle checkpoint","termid":"GO:0090233"},{"relation_name":"is_a","term_name":"regulation of mitotic cell cycle spindle assembly checkpoint","termid":"GO:0090266"},{"relation_name":"negatively_regulates","term_name":"mitotic spindle assembly checkpoint signaling","termid":"GO:0007094"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00883":null,"SJAG_01297":null,"SJAG_01679":null,"SJAG_02169":null,"SJAG_02336":null,"SJAG_02451":null,"SJAG_03126":null,"SJAG_03353":null,"SJAG_03681":null,"SJAG_04259":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0044772"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0044772"},{"rel_name":"positively_regulates","termid":"GO:0000070"},{"rel_name":"positively_regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0000070"},{"rel_name":"regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0023052","GO:0000070","GO:0044772","GO:0007049"],"is_obsolete":false,"name":"negative regulation of mitotic spindle assembly checkpoint signaling","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0140499","terms_by_termid":{"GO:0140499":null,"GO:1902426":null}}


id: PBO:0060725
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit A12","termid":"PBO:0060725"}


id: MONDO:0009158
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Ehlers-Danlos syndromes (EDS) form a heterogeneous group of inherited connective tissue disorders characterized by variable joint hypermobility and cutaneous hyperextensibility. Type X is distinguished by platelet dysfunction associated with a fibronectin abnormality. Type X EDS has been described in only one family so far. Age of onset is about 13-25 years. Transmission is autosomal recessive.","definition_xrefs":["Orphanet:75501"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited bleeding disorder, platelet-type","termid":"MONDO:0000009"},{"relation_name":"is_a","term_name":"Ehlers-Danlos syndrome","termid":"MONDO:0020066"},{"relation_name":"is_a","term_name":"inherited blood coagulation disorder","termid":"MONDO:0021181"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"Ehlers-Danlos syndrome, fibronectinemic type","secondary_identifiers":["SCTID:83586000","OMIM:225310","MEDGEN:346497","UMLS:C1857038","MESH:C565600"],"synonyms":[{"name":"EDS 10","type":"related"},{"name":"EDS X","type":"exact"},{"name":"EDS10 (formerly)","type":"related"},{"name":"Ehlers-Danlos syndrome type 10","type":"exact"},{"name":"Ehlers-Danlos syndrome type 10 (formerly)","type":"related"},{"name":"Ehlers-Danlos syndrome with platelet dysfunction from fibronectin abnormality","type":"exact"},{"name":"Ehlers-Danlos syndrome, dysfibronectinemic type","type":"related"},{"name":"Ehlers-Danlos syndrome, fibronectin-deficient","type":"exact"},{"name":"Ehlers-Danlos syndrome, type 10","type":"related"},{"name":"Ehlers-Danlos syndrome, type X (formerly)","type":"related"},{"name":"FN Abnormality","type":"related"}],"termid":"MONDO:0009158","xrefs":{"Monarch":{"xref_id":"0009158"}}}


id: PBO:0000329
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Minichromosome InStability","termid":"PBO:0000329"}


id: PBO:0116790
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cholesin","termid":"PBO:0116790"}


id: GO:0008697
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-dehydro-4-deoxy-D-glucuronate = 3-deoxy-D-glycero-2,5-hexodiulosonate.","definition_xrefs":["RHEA:23896","EC:5.3.1.17"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular oxidoreductase activity, interconverting aldoses and ketoses","termid":"GO:0016861"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016853","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase activity","secondary_identifiers":["KEGG_REACTION:R04383","MetaCyc:5.3.1.17-RXN"],"synonyms":[{"name":"4-deoxy-L-threo-5-hexosulose-uronate aldose-ketose-isomerase activity","type":"related"},{"name":"4-deoxy-L-threo-5-hexulose uronate isomerase activity","type":"related"},{"name":"5-keto-4-deoxyuronate isomerase activity","type":"related"}],"termid":"GO:0008697"}


id: GO:0043459
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a single or short exposure to a lithium ion stimulus.","definition_xrefs":["PMID:10208444"],"gene_count":0,"genotype_count":0,"name":"obsolete response to short exposure to lithium ion (obsolete GO:0043459)","synonyms":[{"name":"response to short exposure to lithium ion","type":"exact"}],"termid":"GO:0043459"}


id: GO:0104005
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A function that was not selected for in the evolution of an organism, but arises from co-option by another organism, e.g. a human protein used as a virus receptor.","definition_xrefs":["GOC:pdt"],"gene_count":0,"genotype_count":0,"name":"obsolete hijacked molecular function (obsolete GO:0104005)","termid":"GO:0104005"}


id: PBO:0077223
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane BAX inhibitor motif containing 7, pseudogene","termid":"PBO:0077223"}


id: PBO:0005551
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.1.1.34","termid":"PBO:0005551"}


id: FYPO:0000398
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which progression through the G1/S transition of the mitotic cell cycle begins earlier than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic G1/S phase transition","termid":"FYPO:0000394"},{"relation_name":"is_a","term_name":"premature cell cycle phase transition","termid":"FYPO:0000827"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000631","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"premature mitotic G1/S phase transition","synonyms":[{"name":"advanced mitotic G1/S phase transition during vegetative growth","type":"exact"},{"name":"cell cycle progression through the G1/S phase transition: premature","type":"related"},{"name":"premature G1/S phase transition during mitotic cell cycle","type":"exact"},{"name":"premature cell cycle progression through mitotic G1/S phase transition","type":"exact"},{"name":"premature mitotic G1/S phase transition during vegetative growth","type":"exact"},{"name":"premature mitotic G1/S transition","type":"exact"}],"termid":"FYPO:0000398"}


id: MONDO:0011173
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Familial thrombocytosis in which the cause of the disease is a mutation in the MPL gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"essential thrombocythemia","termid":"MONDO:0005029"},{"relation_name":"is_a","term_name":"familial thrombocytosis","termid":"MONDO:0019111"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"thrombocythemia 2","secondary_identifiers":["OMIM:601977","UMLS:C3275998","MEDGEN:477629"],"synonyms":[{"name":"MPL familial thrombocytosis","type":"exact"},{"name":"THCYT2","type":"related"},{"name":"familial thrombocytosis caused by mutation in MPL","type":"exact"},{"name":"thrombocythemia 2","type":"exact"},{"name":"thrombocythemia 2, autosomal dominant, somatic mutation","type":"exact"},{"name":"thrombocythemia type 2","type":"exact"}],"termid":"MONDO:0011173","xrefs":{"Monarch":{"xref_id":"0011173"}}}


id: MOD:00338
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to S-cyano-L-cysteine.","definition_xrefs":["PubMed:4808702","RESID:AA0333","Unimod:438#C","PubMed:12586941"],"direct_ancestors":[{"relation_name":"is_a","term_name":"residues isobaric at 128.0-128.1","termid":"MOD:00893"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"S-cyano-L-cysteine","synonyms":[{"name":"(2R)-2-amino-3-thiocyanatopropanoic acid","type":"exact"},{"name":"Cyano","type":"related"},{"name":"MOD_RES S-cyanocysteine","type":"exact"},{"name":"S-cyano-L-cysteine","type":"exact"},{"name":"S-cyanocysteine","type":"exact"},{"name":"alpha-amino-beta-thiocyanatopropionic acid","type":"exact"},{"name":"beta-thiocyanatoalanine","type":"exact"},{"name":"cyano","type":"related"},{"name":"serine thiocyanic acid ester","type":"exact"}],"termid":"MOD:00338"}


id: SO:0000076
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute to describe a gene when the 3' region overlaps with another gene's 5' region.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"overlapping","termid":"SO:0000068"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"three_prime_five_prime_overlap","synonyms":[{"name":"5' 3' overlap","type":"exact"},{"name":"three prime five prime overlap","type":"exact"}],"termid":"SO:0000076"}


id: GO:0060213
data:
  {"annotated_genes":["SJAG_00686","SJAG_01436","SJAG_04682"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73124,90021,105240],"is_not":false,"summary":null,"term":"GO:0060213"}]},"cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of poly(A) tail shortening of a nuclear-transcribed mRNA. Poly(A) tail shortening is the decrease in length of the poly(A) tail of an mRNA from full length to an oligo(A) length.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of nuclear-transcribed mRNA poly(A) tail shortening","termid":"GO:0060211"},{"relation_name":"is_a","term_name":"positive regulation of mRNA catabolic process","termid":"GO:0061014"},{"relation_name":"positively_regulates","term_name":"nuclear-transcribed mRNA poly(A) tail shortening","termid":"GO:0000289"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00686":null,"SJAG_01436":null,"SJAG_04682":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016071"},{"rel_name":"positively_regulates","termid":"GO:0016071"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0016071","GO:0010467"],"is_obsolete":false,"name":"positive regulation of nuclear-transcribed mRNA poly(A) tail shortening","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"positive regulation of 3' to 5' mRNA deadenylation","type":"related"},{"name":"positive regulation of mRNA deadenylation","type":"related"},{"name":"positive regulation of nuclear mRNA poly(A) tail shortening","type":"related"}],"termid":"GO:0060213","terms_by_termid":{"GO:0060213":null}}


id: PBO:0031412
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-tapered_cell","termid":"PBO:0031412"}


id: PBO:0000940
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dihydroorotate dehydrogenase Ura3","termid":"PBO:0000940"}


id: PBO:0000983
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cysteine synthase Cys12","termid":"PBO:0000983"}


id: SO:0001735
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A kind of histone modification site, whereby the 79th residue (a lysine), from the start of the H3 histone protein is methylated.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone_methylation_site","termid":"SO:0001701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"H3K79_methylation_site","synonyms":[{"name":"H3K79 methylation site","type":"exact"}],"termid":"SO:0001735"}


id: GO:1905794
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a puromycin stimulus.","definition_xrefs":["GO_REF:0000071","GOC:TermGenie","PMID:25736288"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to purine-containing compound","termid":"GO:0014074"},{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to puromycin","synonyms":[{"name":"response to 3'-deoxy-N,N-dimethyl-3'-(O-methyl-L-tyrosinamido)adenosine","type":"exact"}],"termid":"GO:1905794"}


id: GO:0140931
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: neutral L-amino acid(out) + Na+(out) + Cl-(out) = neutral L-amino acid(in) + Na+(in)+ Cl-(in).","definition_xrefs":["PMID:19478081"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid:sodium symporter activity","termid":"GO:0005283"},{"relation_name":"is_a","term_name":"neutral L-amino acid transmembrane transporter activity","termid":"GO:0015175"},{"relation_name":"is_a","term_name":"sodium:chloride symporter activity","termid":"GO:0015378"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"neutral L-amino acid:sodium:chloride symporter activity","synonyms":[{"name":"neutral amino acid:sodium:chloride symporter activity","type":"exact"}],"termid":"GO:0140931"}


id: PBO:0086040
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function involved in DNA repair","termid":"PBO:0086040"}


id: PBO:0109083
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lncRNA induced by TGF-beta and antagonizes TGF-beta signaling 1","termid":"PBO:0109083"}


id: PBO:0027466
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cell_wall_thickness_at_new_end_during_vegetative_growth","termid":"PBO:0027466"}


id: PBO:0085274
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Peroxisomal integral membrane protein; involved in negative regulation of peroxisome size; partially functionally redundant with Pex30p and Pex32p; probably acts at a step downstream of steps mediated by Pex28p and Pex29p; PEX31 has a paralog, PEX30, that arose from the whole genome duplication","termid":"PBO:0085274"}


id: PBO:0004093
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.6.2.4","termid":"PBO:0004093"}


id: PBO:0002439
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation initiation factor eIF2B delta subunit (predicted)","termid":"PBO:0002439"}


id: GO:0021509
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of a single row of glia at the dorsal midline of the developing neural tube. This region provides inductive signals for the specification of neuronal cell types and of the specification of neural crest cells. The cells comprising the roof plate are the precursors to radial glial cells.","definition_xrefs":["GOC:dgh","PMID:15936325","GO_REF:0000021","GOC:cls","GOC:dph","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"neural tube formation","termid":"GO:0001841"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"roof plate formation","termid":"GO:0021509"}


id: PBO:0066032
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAN pseudogene 1","termid":"PBO:0066032"}


id: GO:0042724
data:
  {"annotated_genes":["SJAG_02421","SJAG_04866","SJAG_00381","SJAG_03362","SJAG_04067","SJAG_03538","SJAG_04282","SJAG_02420","SJAG_01970","SJAG_02406","SJAG_00827"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[114013,89360],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0090180"},{"annotations":[61718,74352,78751,74273,70506,77482],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009228"},{"annotations":[113925,113919,78558,65995,116350,67669],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009229"},{"annotations":[110775,99850,110776],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036172"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of thiamine (vitamin B1), and related compounds.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"water-soluble vitamin biosynthetic process","termid":"GO:0042364"},{"relation_name":"is_a","term_name":"thiamine-containing compound metabolic process","termid":"GO:0042723"},{"relation_name":"is_a","term_name":"sulfur compound biosynthetic process","termid":"GO:0044272"},{"relation_name":"is_a","term_name":"pyrimidine-containing compound biosynthetic process","termid":"GO:0072528"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00381":null,"SJAG_00827":null,"SJAG_01970":null,"SJAG_02406":null,"SJAG_02420":null,"SJAG_02421":null,"SJAG_03362":null,"SJAG_03538":null,"SJAG_04067":null,"SJAG_04282":null,"SJAG_04866":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006766"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0006766","GO:0006790","GO:0044281"],"is_obsolete":false,"name":"thiamine-containing compound biosynthetic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null},"synonyms":[{"name":"thiamin and derivative biosynthesis","type":"exact"},{"name":"thiamin and derivative biosynthetic process","type":"exact"},{"name":"thiamin-containing compound biosynthetic process","type":"exact"},{"name":"thiamine and derivative biosynthesis","type":"exact"},{"name":"thiamine and derivative biosynthetic process","type":"exact"},{"name":"thiamine-containing compound anabolism","type":"exact"},{"name":"thiamine-containing compound biosynthesis","type":"exact"},{"name":"thiamine-containing compound formation","type":"exact"},{"name":"thiamine-containing compound synthesis","type":"exact"},{"name":"vitamin B1 and derivative biosynthesis","type":"exact"},{"name":"vitamin B1 and derivative biosynthetic process","type":"exact"}],"termid":"GO:0042724","terms_by_termid":{"GO:0009228":null,"GO:0009229":null,"GO:0036172":null,"GO:0090180":null}}


id: PBO:0041302
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C2 calcium dependent domain containing 5","termid":"PBO:0041302"}


id: GO:0046714
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to borate, the anion (BO3)3-.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anion binding","termid":"GO:0043168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"borate binding","synonyms":[{"name":"boron binding","type":"related"}],"termid":"GO:0046714"}


id: GO:0071976
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Cell motility that results in the smooth movement of a cell along a solid surface.","definition_xrefs":["PMID:18461074"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell motility","termid":"GO:0048870"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell gliding","synonyms":[{"name":"cell gliding motility","type":"exact"}],"termid":"GO:0071976"}


id: PBO:0087157
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA lariat debranching enzyme; catalyzes debranching of lariat introns formed during pre-mRNA splicing; required for efficient Ty1 transposition; knockdown of human homolog Dbr1 rescues toxicity of RNA-binding proteins TDP-43 and FUS which are implicated in amyotrophic lateral sclerosis (ALS), suggests potential therapeutic target for ALS and related TDP-43 proteinopathies; human homolog DBR1 can complement yeast dbr1 null mutant","termid":"PBO:0087157"}


id: PBO:0042750
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centromere protein V","termid":"PBO:0042750"}


id: GO:0032839
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"All of the contents of a dendrite, excluding the surrounding plasma membrane.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron projection cytoplasm","termid":"GO:0120111"},{"relation_name":"part_of","term_name":"dendrite","termid":"GO:0030425"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"dendrite cytoplasm","synonyms":[{"name":"dendritic cytoplasm","type":"exact"}],"termid":"GO:0032839"}


id: _global:required_for
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD_extension_relations","definition":"Indicates that a modification is required for a GO function or process.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"required_for","termid":"_global:required_for"}


id: MONDO:1011541
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Ichthyosis that occurs in cattle.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ichthyosis, non-human animal","termid":"MONDO:1011427"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ichthyosis, cattle","secondary_identifiers":["OMIA:001993-9913"],"termid":"MONDO:1011541","xrefs":{"Monarch":{"xref_id":"1011541"}}}


id: GO:0071893
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of molecular signals initiated by the binding of a member of the BMP (bone morphogenetic protein) family to its receptor on the surface of a target cell, which contributes to nephric duct formation.","definition_xrefs":["GOC:mtg_kidney_jan10","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete BMP signaling pathway involved in nephric duct formation (obsolete GO:0071893)","synonyms":[{"name":"BMP signalling pathway involved in nephric duct formation","type":"exact"}],"termid":"GO:0071893"}


id: PBO:0002297
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.3.1.37","termid":"PBO:0002297"}


id: GO:0046153
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of ommochromes, any of a large group of natural polycyclic pigments commonly found in the Arthropoda, particularly in the ommatidia of the compound eye.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catabolic process","termid":"GO:0009056"},{"relation_name":"is_a","term_name":"eye pigment catabolic process","termid":"GO:0046151"},{"relation_name":"is_a","term_name":"ommochrome metabolic process","termid":"GO:0046152"},{"relation_name":"is_a","term_name":"ocellus pigment catabolic process","termid":"GO:0046159"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"ommochrome catabolic process","synonyms":[{"name":"ommochrome breakdown","type":"exact"},{"name":"ommochrome catabolism","type":"exact"},{"name":"ommochrome degradation","type":"exact"}],"termid":"GO:0046153"}


id: GO:1990164
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H2A by the addition of a phosphate group.","definition_xrefs":["PMID:23080121","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H2A phosphorylation (obsolete GO:1990164)","termid":"GO:1990164"}


id: SO:0000653
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Cytosolic 28S rRNA is an RNA component of the large subunit of cytosolic ribosomes in metazoan eukaryotes.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"cytosolic_rRNA_28S_gene","termid":"SO:0002239"},{"relation_name":"is_a","term_name":"cytosolic_LSU_rRNA","termid":"SO:0000651"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytosolic_28S_rRNA","secondary_identifiers":["http://en.wikipedia.org/wiki/28S_ribosomal_RNA"],"synonyms":[{"name":"cytosolic 28S LSU rRNA","type":"exact"},{"name":"cytosolic 28S rRNA","type":"exact"},{"name":"cytosolic 28S ribosomal RNA","type":"exact"},{"name":"cytosolic rRNA 28S","type":"exact"}],"termid":"SO:0000653"}


id: PR:Q9Y7Z3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An acyl-CoA-binding protein that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO04104","PANTHER:PTHR23310:SF12"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acyl-CoA-binding protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1539.06","secondary_identifiers":["UniProtKB:Q9Y7Z3"],"synonyms":[{"name":"ACBP (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-DBI","type":"exact"}],"termid":"PR:Q9Y7Z3"}


id: PBO:0003269
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-directed RNA polymerase III complex subunit Rpc31","termid":"PBO:0003269"}


id: MONDO:0019413
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Ischio-vertebral syndrome is a very rare, poorly-defined bone disease characterized by ischial aplasia or hypoplasia, vertebral anomalies (vertebral malsegmentation, kyphoscoliosis), and in some patients, non-distinctive facial dysmorphism.","definition_xrefs":["Orphanet:85200"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"dysostosis","termid":"MONDO:0018234"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"ischio-vertebral syndrome","secondary_identifiers":["UMLS:C4274732","GARD:19052","icd11.foundation:185911418","MEDGEN:903166","SCTID:715654001"],"synonyms":[{"name":"ischio-spinal dysostosis","type":"exact"},{"name":"ischio-vertebral dysplasia","type":"exact"}],"termid":"MONDO:0019413","xrefs":{"Monarch":{"xref_id":"0019413"}}}


id: MONDO:0013070
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spermatogenic failure","termid":"MONDO:0004983"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"spermatogenic failure 7","secondary_identifiers":["GARD:18400","OMIM:612997","MESH:C567832","MEDGEN:414478","UMLS:C2751811","DOID:0070173"],"synonyms":[{"name":"Male infertility, nonsyndromic, autosomal recessive","type":"related"},{"name":"SPGF7","type":"related"},{"name":"spermatogenic failure 7","type":"exact"},{"name":"spermatogenic failure type 7","type":"exact"}],"termid":"MONDO:0013070","xrefs":{"Monarch":{"xref_id":"0013070"}}}


id: PBO:0000906
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial TOM complex subunit Tom20 (predicted)","termid":"PBO:0000906"}


id: PBO:0029047
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_vacuole_organization_during_nitrogen_starvation","termid":"PBO:0029047"}


id: PR:O43059
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- syp1 gene.","definition_xrefs":["UniProtKB:O43059","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytoskeletal protein syp1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC4C3.06","synonyms":[{"name":"Spom972h-syp1","type":"exact"}],"termid":"PR:O43059"}


id: PBO:0067213
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 279, pseudogene","termid":"PBO:0067213"}


id: PBO:0059612
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ATP6 pseudogene 24","termid":"PBO:0059612"}


id: PBO:0073221
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"semaphorin 6B","termid":"PBO:0073221"}


id: GO:0000744
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"During sexual reproduction, the creation of a single nucleus from two nuclei as a result of fusing the nuclear envelopes that surround each nuclei. This takes place following the mutual exchange of one of the two nuclei produced by the mitosis that follows the second meiotic nuclear division. This occurs in ciliated protozoans such as Tetrahymena.","definition_xrefs":["GOC:mah","GOC:pg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"karyogamy","termid":"GO:0000741"},{"relation_name":"part_of","term_name":"conjugation with mutual genetic exchange","termid":"GO:0000748"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"karyogamy involved in conjugation with mutual genetic exchange","synonyms":[{"name":"karyogamy involved in conjugation without cellular fusion","type":"exact"}],"termid":"GO:0000744"}


id: MONDO:0007884
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leg ulcers, familial, of juvenile onset","secondary_identifiers":["OMIM:150590","UMLS:C1835489","MEDGEN:322673","MESH:C563632"],"synonyms":[{"name":"leg ulcers, familial, of juvenile onset","type":"exact"}],"termid":"MONDO:0007884","xrefs":{"Monarch":{"xref_id":"0007884"}}}


id: MOD:00043
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to S-phospho-L-cysteine.","definition_xrefs":["PubMed:3142516","PubMed:7961745","PubMed:8128219","RESID:AA0034","Unimod:21#C"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphorylated residue","termid":"MOD:00696"},{"relation_name":"is_a","term_name":"residues isobaric at 182.96-182.98 Da","termid":"MOD:00777"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"},{"rel_name":"is_a","termid":"MOD:00696"}],"interesting_parent_ids":["MOD:00696","MOD:00905"],"is_obsolete":false,"name":"S-phospho-L-cysteine","synonyms":[{"name":"(2R)-2-amino-3-(phosphonosulfanyl)propanoic acid","type":"exact"},{"name":"2-azanyl-3-(phosphonosulfanyl)propanoic acid","type":"exact"},{"name":"ACT_SITE Phosphocysteine intermediate","type":"exact"},{"name":"MOD_RES Phosphocysteine","type":"exact"},{"name":"PCys","type":"exact"},{"name":"Phospho","type":"related"},{"name":"Phosphorylation","type":"related"},{"name":"S-phospho-L-cysteine","type":"exact"},{"name":"S-phosphonocysteine","type":"exact"},{"name":"S-phosphorylated L-cysteine","type":"exact"},{"name":"S3-phosphocysteine","type":"exact"},{"name":"cysteine phosphate thioester","type":"exact"}],"termid":"MOD:00043"}


id: PBO:0043540
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"component of oligomeric golgi complex 8","termid":"PBO:0043540"}


id: SO:0002164
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A kind of histone modification site, whereby the 5th residue (a lysine), from the start of the H2B histone protein is acetylated.","definition_xrefs":["PMID:18552846"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone_2B_acetylation_site","termid":"SO:0002143"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"H2BK5_acetylation_site","synonyms":[{"name":"H2BK5 acetylation site","type":"exact"},{"name":"H2BK5ac","type":"exact"}],"termid":"SO:0002164"}


id: PBO:0044325
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CYCS pseudogene 5","termid":"PBO:0044325"}


id: PBO:0054431
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1827","termid":"PBO:0054431"}


id: GO:0003961
data:
  {"annotated_genes":["SJAG_02972"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[110837],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051009"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: O-acetyl-L-homoserine + methanethiol = L-methionine + acetate. Also reacts with other thiols and H2S, producing homocysteine or thioethers.","definition_xrefs":["EC:2.5.1.49"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity, transferring alkyl or aryl (other than methyl) groups","termid":"GO:0016765"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02972":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016765"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016765","GO:0016740"],"is_obsolete":false,"name":"O-acetylhomoserine aminocarboxypropyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0019282","MetaCyc:O-ACETYLHOMOSERINE-THIOL-LYASE-RXN"],"synonyms":[{"name":"L-methionine anabolism, direct, from O-acetyl-L-homoserine","type":"exact"},{"name":"L-methionine biosynthetic process, direct, from O-acetyl-L-homoserine","type":"exact"},{"name":"L-methionine formation, direct, from O-acetyl-L-homoserine","type":"exact"},{"name":"L-methionine synthesis, direct, from O-acetyl-L-homoserine","type":"exact"},{"name":"O-acetyl-L-homoserine acetate-lyase (adding methanethiol) activity","type":"related"},{"name":"O-acetyl-L-homoserine sulfhydrolase activity","type":"related"},{"name":"O-acetyl-L-homoserine:methanethiol 3-amino-3-carboxypropyltransferase activity","type":"related"},{"name":"O-acetylhomoserine (thiol)-lyase activity","type":"exact"},{"name":"O-acetylhomoserine sulfhydrolase activity","type":"related"},{"name":"OAH sulfhydrylase activity","type":"related"},{"name":"methionine biosynthetic process, direct, from O-acetyl-L-homoserine","type":"exact"}],"termid":"GO:0003961","terms_by_termid":{"GO:0051009":null}}


id: GO:0019730
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An immune response against microbes mediated through a body fluid. Examples of this process are seen in the antimicrobial humoral response of Drosophila melanogaster and Mus musculus.","definition_xrefs":["GOC:mtg_sensu","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"humoral immune response","termid":"GO:0006959"},{"relation_name":"is_a","term_name":"defense response to symbiont","termid":"GO:0140546"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antimicrobial humoral response","secondary_identifiers":["GO:0019735","Reactome:R-HSA-6803157","GO:0006960"],"termid":"GO:0019730"}


id: MONDO:0009517
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Leprechaunism is a congenital form of extreme insulin resistance (a group of syndromes that also includes Rabson-Mensenhall syndrome, type A insulin-resistance syndrome, and acquired type B insulin-resistance syndrome) characterized by intrauterine and mainly postnatal severe growth retardation.","definition_xrefs":["Orphanet:508"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"diabetes mellitus","termid":"MONDO:0005015"},{"relation_name":"excluded_subClassOf","term_name":"progeroid syndrome","termid":"MONDO:0015333"},{"relation_name":"excluded_subClassOf","term_name":"hypertrichosis","termid":"MONDO:0019280"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome without intellectual disability","termid":"MONDO:0015161"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025"],"is_obsolete":false,"name":"Donohue syndrome","secondary_identifiers":["DOID:0050470","ICD9:259.8","MEDGEN:82708","MESH:D056731","NORD:1361","SCTID:111307005","SCTID:33559001","UMLS:C0265344","GARD:6885","NCIT:C84676","OMIM:246200"],"synonyms":[{"name":"Donohue syndrome","type":"exact"},{"name":"Leprechaunism","type":"exact"},{"name":"insulin receptor, defect 1N","type":"related"},{"name":"leprechaunism","type":"exact"}],"termid":"MONDO:0009517","xrefs":{"Monarch":{"xref_id":"0009517"}}}


id: FYPO:0006763
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle checkpoint phenotype in which cell cycle regulation mediated by the meiotic cell cycle DNA replication checkpoint does not occur under conditions that normally trigger the checkpoint signaling and response. The meiotic DNA replication checkpoint normally prevents the initiation of meiotic nuclear division until pre-meiotic DNA replication is complete.","definition_xrefs":["PomBase:mah","GO:0033315","PMID:10521402"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal meiotic cell cycle process","termid":"FYPO:0002739"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"},{"relation_name":"is_a","term_name":"meiotic cell cycle checkpoint phenotype","termid":"FYPO:0005511"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000298","FYPO:0005447","FYPO:0000002","FYPO:0000631","FYPO:0001985"],"is_obsolete":false,"name":"abolished meiotic cell cycle DNA replication checkpoint","synonyms":[{"name":"abolished meiotic DNA replication checkpoint","type":"exact"},{"name":"abolished meiotic G2/MI DNA replication checkpoint","type":"exact"}],"termid":"FYPO:0006763"}


id: FYPO:0000310
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce a normal germ tube, but does not go on to form a viable dividing cell.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable after spore germination, without cell division","termid":"FYPO:0001991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000004","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"inviable after spore germination, without cell division, with normal germ tube morphology","synonyms":[{"name":"inviable after spore germination, undivided cell with normal germ tube morphology","type":"exact"},{"name":"inviable following spore germination, without cell division, with normal germ tube morphology","type":"exact"},{"name":"inviable germinated spore, without cell division, with normal germ tube morphology","type":"exact"},{"name":"lethal after spore germination, without cell division, with normal germ tube morphology","type":"exact"}],"termid":"FYPO:0000310"}


id: PBO:0090020
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bifunctional pseudouridylate synthase/pseudouridine kinase","termid":"PBO:0090020"}


id: PBO:0044338
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CYCS pseudogene 22","termid":"PBO:0044338"}


id: MONDO:0000667
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An agnosia that is a loss of the ability to distinguishing environmental and non-verbal auditory cues including difficulty distinguishing speech from non-speech sounds even though hearing is usually normal.","definition_xrefs":["DOID:0060137"],"direct_ancestors":[{"relation_name":"is_a","term_name":"agnosia","termid":"MONDO:0005638"},{"relation_name":"is_a","term_name":"auditory perceptual disorders","termid":"MONDO:0024422"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"auditory agnosia","secondary_identifiers":["MEDGEN:68602","UMLS:C0234501"],"termid":"MONDO:0000667","xrefs":{"Monarch":{"xref_id":"0000667"}}}


id: MONDO:0000735
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete oculodentodigital dysplasia (obsolete MONDO:0000735)","termid":"MONDO:0000735","xrefs":{"Monarch":{"xref_id":"0000735"}}}


id: PBO:0054406
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1802","termid":"PBO:0054406"}


id: SO:0001874
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A rearrangement breakpoint within the same chromosome.","definition_xrefs":["NCBI:th"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome_breakpoint","termid":"SO:0001021"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intrachromosomal_breakpoint","synonyms":[{"name":"intrachromosomal breakpoint","type":"exact"}],"termid":"SO:0001874"}


id: GO:0043482
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation of coloring matter in a particular location in a cell, occurring in response to some external stimulus.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular pigmentation","termid":"GO:0033059"},{"relation_name":"is_a","term_name":"pigment accumulation","termid":"GO:0043476"},{"relation_name":"is_a","term_name":"cellular response to stimulus","termid":"GO:0051716"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular pigment accumulation","termid":"GO:0043482"}


id: PR:O74509
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- vsl1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74509"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar morphogenesis protein 7 homolog (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC594.06c","synonyms":[{"name":"Spom972h-vsl1","type":"exact"}],"termid":"PR:O74509"}


id: GO:0033341
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of collagen binding.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of collagen binding (obsolete GO:0033341)","termid":"GO:0033341"}


id: PBO:0067494
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 629, pseudogene","termid":"PBO:0067494"}


id: PBO:0003050
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptionally regulated by CCAAT complex","termid":"PBO:0003050"}


id: PBO:0017740
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translationally controlled tumor protein homolog Tma19/Tpt1","termid":"PBO:0017740"}


id: PBO:0116266
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent DNA helicase, also known as reptin; conserved component of multiple complexes including the INO80 complex, the Swr1 complex, the R2TP complex (Rvb1-Rvb2-Tah1-Pih1) and the TTT Hsp90 cochaperone complex that is involved in chromatin remodeling and telomeric chromatin regulation; involved in multiple processes such as chromatin remodeling, box C/D snoRNP assembly, and RNA polymerase II assembly; member of the AAA+ and RuvB protein families, similar to Rvb1p","termid":"PBO:0116266"}


id: GO:0043804
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N-formimidoylglycine => H2O + imidazol-4-one.","definition_xrefs":["PMID:27286964","RHEA:24935"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides","termid":"GO:0016812"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0016810","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"imidazolone hydrolase activity","termid":"GO:0043804"}


id: PBO:0030502
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_mitotic_cell_cycle_checkpoint","termid":"PBO:0030502"}


id: PBO:0003546
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-directed RNA polymerase III complex large subunit Rpc1 (predicted)","termid":"PBO:0003546"}


id: PBO:0073429
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing factor 3a, subunit 3 pseudogene 1","termid":"PBO:0073429"}


id: FYPO:0000851
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which cells show decreased sensitivity to osmotic stress.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"resistance to stress during vegetative growth","termid":"FYPO:0000850"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000139","FYPO:0005447","FYPO:0000003"],"is_obsolete":false,"name":"resistance to osmotic stress","synonyms":[{"name":"increased growth during cellular response to osmotic stress","type":"exact"},{"name":"increased vegetative cell population growth during cellular response to osmotic stress","type":"exact"},{"name":"resistance to osmotic stress during mitotic cell cycle","type":"related"},{"name":"resistance to osmotic stress during vegetative growth","type":"exact"},{"name":"resistant to osmotic stress","type":"exact"}],"termid":"FYPO:0000851"}


id: PBO:0063943
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl cis/trans isomerase, NIMA-interacting 4","termid":"PBO:0063943"}


id: MOD:00584
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification produced by formation of an adduct with 4-sulfophenyl isothiocyanate.","definition_xrefs":["PubMed:14689565","PubMed:14745769","PubMed:16526082","Unimod:261"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isothiocyanate reagent derivatized residue","termid":"MOD:00841"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4-sulfophenyl isothiocyanate derivatized residue","synonyms":[{"name":"4-sulfophenyl isothiocyanate","type":"related"},{"name":"SPITC","type":"related"}],"termid":"MOD:00584"}


id: GO:0046432
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA, a derivative of coenzyme A.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine ribonucleotide metabolic process","termid":"GO:0009150"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"2'-(5''-triphosphoribosyl)-3'-dephospho-CoA metabolic process","synonyms":[{"name":"2'-(5''-triphosphoribosyl)-3'-dephospho-CoA metabolism","type":"exact"}],"termid":"GO:0046432"}


id: PBO:0030382
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_extent_of_cell_population_growth","termid":"PBO:0030382"}


id: GO:0019551
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of glutamate into other compounds, including 2-oxoglutarate.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete glutamate catabolic process to 2-oxoglutarate (obsolete GO:0019551)","synonyms":[{"name":"glutamate breakdown to 2-oxoglutarate","type":"exact"},{"name":"glutamate catabolic process to 2-ketoglutarate","type":"exact"},{"name":"glutamate catabolic process to alpha-ketoglutarate","type":"exact"},{"name":"glutamate catabolic process to alpha-oxoglutarate","type":"exact"},{"name":"glutamate catabolism to 2-ketoglutarate","type":"exact"},{"name":"glutamate catabolism to alpha-ketoglutarate","type":"exact"},{"name":"glutamate catabolism to alpha-oxoglutarate","type":"exact"},{"name":"glutamate degradation to 2-oxoglutarate","type":"exact"}],"termid":"GO:0019551"}


id: PBO:0043917
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"colorectal neoplasia differentially expressed","termid":"PBO:0043917"}


id: PBO:0077061
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thrombospondin type 1 domain containing 7B","termid":"PBO:0077061"}


id: PBO:0042915
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement factor properdin","termid":"PBO:0042915"}


id: GO:0044684
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 7,8-dihydromethanopterin + NADPH = 5,6,7,8-tetrahydromethanopterin + NADP.","definition_xrefs":["PMID:15028691","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor","termid":"GO:0016646"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"dihydromethanopterin reductase activity","secondary_identifiers":["EC:1.5.99.15","RHEA:42804"],"termid":"GO:0044684"}


id: PBO:0054414
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1810","termid":"PBO:0054414"}


id: PBO:0055164
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2584","termid":"PBO:0055164"}


id: GO:0003756
data:
  {"annotated_genes":["SJAG_04904","SJAG_00288","SJAG_03414","SJAG_02301","SJAG_00131","SJAG_04046"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[70599,73161,88936,101096,110306,116187],"is_not":false,"summary":null,"term":"GO:0003756"}]},"cv_name":"molecular_function","definition":"Catalysis of the rearrangement of both intrachain and interchain disulfide bonds in proteins.","definition_xrefs":["EC:5.3.4.1","GOC:vw","Wikipedia:Protein_disulfide-isomerase#Function"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular oxidoreductase activity, transposing S-S bonds","termid":"GO:0016864"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00131":null,"SJAG_00288":null,"SJAG_02301":null,"SJAG_03414":null,"SJAG_04046":null,"SJAG_04904":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016853","GO:0140096","GO:0003674"],"is_obsolete":false,"name":"protein disulfide isomerase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-8950113","Reactome:R-HSA-8950183","Reactome:R-HSA-8950456","MetaCyc:5.3.4.1-RXN","GO:0006467"],"synonyms":[{"name":"S-S rearrangase activity","type":"related"},{"name":"disulphide bond formation","type":"exact"},{"name":"protein cysteine-thiol oxidation","type":"related"},{"name":"protein disulfide-isomerase","type":"exact"},{"name":"protein disulphide isomerase activity","type":"exact"},{"name":"protein thiol-disulfide exchange","type":"exact"},{"name":"protein thiol-disulphide exchange","type":"exact"}],"termid":"GO:0003756","terms_by_termid":{"GO:0003756":null}}


id: MONDO:0005480
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inflammatory skin condition caused by direct contact between the skin and either an irritating substance or an allergen.","definition_xrefs":["NCIT:C26743"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dermatitis","termid":"MONDO:0002406"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"contact dermatitis","secondary_identifiers":["UMLS:C0011616","ICD9:692.9","MESH:D003877","EFO:0005319","DOID:2773","ICD9:692.89","SCTID:40275004","MEDGEN:8329"],"synonyms":[{"name":"contact dermatitis","type":"exact"},{"name":"contact dermatitis/eczema","type":"exact"},{"name":"contact eczema","type":"narrow"},{"name":"dermatitis venenata","type":"exact"},{"name":"dermatitis, venenata","type":"exact"}],"termid":"MONDO:0005480","xrefs":{"Monarch":{"xref_id":"0005480"}}}


id: PBO:0069679
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 956, pseudogene","termid":"PBO:0069679"}


id: PBO:0091175
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N alpha-acetylation related protein Nat2","termid":"PBO:0091175"}


id: MONDO:0017523
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"polydactyly of a biphalangeal thumb","termid":"MONDO:0008269"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polydactyly of a biphalangeal thumb, unilateral","secondary_identifiers":["Orphanet:295144"],"synonyms":[{"name":"preaxial polydactyly type 1, unilateral","type":"exact"}],"termid":"MONDO:0017523","xrefs":{"Monarch":{"xref_id":"0017523"}}}


id: PBO:0053982
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1298","termid":"PBO:0053982"}


id: PBO:0053867
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1142","termid":"PBO:0053867"}


id: FYECO:0000211
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which MMS (methyl methanesulfonate) was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ MMS","synonyms":[{"name":"methyl methanesulfonate added","type":"exact"}],"termid":"FYECO:0000211"}


id: PBO:0049301
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutathione S-transferase mu 3 pseudogene 1","termid":"PBO:0049301"}


id: GO:0009772
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A photosynthetic electron transport chain in which electrons move from the primary electron acceptor (Quinone, Q) through a chain of electron transport molecules in the thylakoid membrane until they reach the ultimate electron acceptor of Photosystem II, which is plastocyanin (PC). The electron is then passed to the P700 chlorophyll a molecules of the reaction centre of photosystem I.","definition_xrefs":["ISBN:0716731363","ISBN:0816017360","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"photosynthetic electron transport chain","termid":"GO:0009767"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0006091","GO:0008150"],"is_obsolete":false,"name":"photosynthetic electron transport in photosystem II","termid":"GO:0009772"}


id: PBO:0058519
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 5707","termid":"PBO:0058519"}


id: FYECO:0000193
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which dethiobiotin was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ dethiobiotin","synonyms":[{"name":"desthiobiotin added","type":"exact"}],"termid":"FYECO:0000193"}


id: GO:0010161
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated upon sensing of red light by a photoreceptor molecule. Red light is electromagnetic radiation of wavelength of 580-700nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs.","definition_xrefs":["GOC:sm","GOC:mtg_far_red"],"direct_ancestors":[{"relation_name":"is_a","term_name":"red or far-red light signaling pathway","termid":"GO:0010017"},{"relation_name":"is_a","term_name":"cellular response to red light","termid":"GO:0071491"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"red light signaling pathway","synonyms":[{"name":"red light phototransduction","type":"exact"},{"name":"red light signal transduction","type":"exact"},{"name":"red light signalling pathway","type":"exact"}],"termid":"GO:0010161"}


id: PBO:0056465
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microtubule associated serine/threonine kinase 3","termid":"PBO:0056465"}


id: GO:0005077
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binds to MAP kinase and anchors it to a particular subcellular location.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete MAP-kinase anchoring activity (obsolete GO:0005077)","synonyms":[{"name":"MAP-kinase anchor protein activity","type":"exact"},{"name":"MAP-kinase anchoring activity","type":"exact"}],"termid":"GO:0005077"}


id: MONDO:0009518
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any leprosy in which the cause of the disease is a mutation in the TLR2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leprosy, susceptibility to, 3","secondary_identifiers":["UMLS:C1968668","OMIM:246300","MEDGEN:368500"],"synonyms":[{"name":"LPRS3","type":"related"},{"name":"TLR2 leprosy","type":"exact"},{"name":"leprosy caused by mutation in TLR2","type":"exact"},{"name":"leprosy, susceptibility to","type":"exact"},{"name":"leprosy, susceptibility to, 3","type":"exact"},{"name":"leprosy, susceptibility to, type 3","type":"exact"},{"name":"susceptibility to leprosy 3","type":"related"}],"termid":"MONDO:0009518","xrefs":{"Monarch":{"xref_id":"0009518"}}}


id: PR:000037503
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DNA repair protein Crb2 that is phosphorylated at two conserved SQ/TQ motifs in the N-terminal region. Example: UniProtKB:P87074-1, Thr-73, MOD:00047|Ser-80, MOD:00046.","definition_xrefs":["PMID:22792081","PomBase:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA repair protein Crb2 (Schizosaccharomyces pombe)","termid":"PR:000029999"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"crb2/Phos(T73,S80)","pombase_gene_id":"SPBC342.05","synonyms":[{"name":"Crb2 phosphorylated","type":"related"},{"name":"DNA repair protein rhp9 phosphorylated 2 (Schizosaccharomyces pombe)","type":"related"},{"name":"PomBase_original_PRO_term_name: DNA repair protein Crb2 phosphorylated 2 (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-rhp9/Phos:2","type":"exact"},{"name":"crb2/Phos(T73,S80)","type":"exact"}],"termid":"PR:000037503"}


id: PBO:0012043
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"does not functionally complement S. cerevisiae vht1","termid":"PBO:0012043"}


id: GO:0043818
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H+ + NADH + O2 + precorrin-3A = H2O + NAD+ + precorrin-3B.","definition_xrefs":["RHEA:17293","EC:1.14.13.83"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"precorrin-3B synthase activity","secondary_identifiers":["MetaCyc:R321-RXN","KEGG_REACTION:R05217"],"synonyms":[{"name":"CobG","type":"related"},{"name":"precorrin-3A,NADH:oxygen oxidoreductase (20-hydroxylating)","type":"exact"},{"name":"precorrin-3X synthase activity","type":"related"}],"termid":"GO:0043818"}


id: PBO:0108966
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ciliary microtubule associated protein 1C","termid":"PBO:0108966"}


id: SO:1000062
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The nucleotide change in the codon triplet creates a terminator codon.","definition_xrefs":["EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000062 sequence_variant_causing_nonsense_codon_change_in_transcript (obsolete SO:1000062)","synonyms":[{"name":"mutation causing nonsense codon change in transcript","type":"related"},{"name":"sequence variant causing nonsense codon change in transcript","type":"exact"}],"termid":"SO:1000062"}


id: GO:0050887
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The determination of the type or quality of a sensation. Sensory modalities include touch, thermal sensation, visual sensation, auditory sensation and pain.","definition_xrefs":["ISBN:0721619908"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensory processing","termid":"GO:0050893"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"determination of sensory modality","termid":"GO:0050887"}


id: MOD:00605
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative, C-Terminal/Glutamate/Aspartate sulfonation","definition_xrefs":["Unimod:285"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isotope tagged reagent derivatized residue","termid":"MOD:01426"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sulfanilic Acid (SA), light C12","synonyms":[{"name":"Light Sulfanilic Acid (SA) C12","type":"related"},{"name":"SulfanilicAcid","type":"related"}],"termid":"MOD:00605"}


id: PBO:0017880
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi to plasma membrane transport protein Rsn1 (predicted)","termid":"PBO:0017880"}


id: MONDO:0016175
data:
  {"annotated_genes":["SJAG_00660","SJAG_03457","SJAG_00212","SJAG_02399","SJAG_00516","SJAG_01471","SJAG_00120"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87556,87555],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009053"},{"annotations":[87403],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0018163"},{"annotations":[85491],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013051"},{"annotations":[87138],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0027462"},{"annotations":[87137],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0027451"},{"annotations":[86322,86323],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014706"},{"annotations":[87416],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010572"},{"annotations":[86951],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013755"},{"annotations":[85930],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010208"}]},"cv_name":"mondo","definition":"Cutis laxa (CL) is an inherited or acquired connective tissue disorder characterized by wrinkled, redundant and sagging inelastic skin associated with skeletal and developmental anomalies and, in some cases, with severe systemic involvement. Several different forms of inherited CL have been described, differentiated on the basis of the mode of inheritance and differences in the extent of internal organ involvement, associated anomalies and disease severity.","definition_xrefs":["Orphanet:209"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete syndromic diaphragmatic or abdominal wall malformation (obsolete MONDO:0015216)","termid":"MONDO:0015216"},{"relation_name":"is_a","term_name":"integumentary system disorder","termid":"MONDO:0002051"},{"relation_name":"is_a","term_name":"developmental defect during embryogenesis","termid":"MONDO:0019755"},{"relation_name":"is_a","term_name":"congenital entropion","termid":"MONDO:0020159"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00120":null,"SJAG_00212":null,"SJAG_00516":null,"SJAG_00660":null,"SJAG_01471":null,"SJAG_02399":null,"SJAG_03457":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"cutis laxa","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["NORD:1022","SCTID:58588007","UMLS:C0010495","icd11.foundation:1227401566","DOID:3144","MedDRA:10011692","NCIT:C84663","MESH:D003483","GARD:6227","MEDGEN:8206"],"synonyms":[{"name":"cutis laxa","type":"exact"},{"name":"elastolysis","type":"exact"},{"name":"generalised elastolysis","type":"related"},{"name":"generalized elastolysis","type":"related"},{"name":"loose skin","type":"exact"}],"termid":"MONDO:0016175","terms_by_termid":{"MONDO:0009053":null,"MONDO:0010208":null,"MONDO:0010572":null,"MONDO:0013051":null,"MONDO:0013755":null,"MONDO:0014706":null,"MONDO:0018163":null,"MONDO:0027451":null,"MONDO:0027462":null},"xrefs":{"Monarch":{"xref_id":"0016175"}}}


id: MOD:00133
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-glutamine residue and an L-lysine residue by an isopeptide bond with the formation of N6-(L-isoglutamyl)-L-lysine and the release of ammonia.","definition_xrefs":["PubMed:5656070","RESID:AA0124#GLN","ChEBI:21863","PubMed:2461365","PubMed:5637041","PubMed:8598899","DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"crosslinked residues with loss of ammonia","termid":"MOD:00946"},{"relation_name":"is_a","term_name":"N6-(L-isoglutamyl)-L-lysine","termid":"MOD:01630"},{"relation_name":"is_a","term_name":"crosslinked L-glutamine residue","termid":"MOD:02046"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:01875"}],"interesting_parent_ids":["MOD:01875"],"is_obsolete":false,"name":"N6-(L-isoglutamyl)-L-lysine (Gln)","synonyms":[{"name":"(2S)-2-amino-6-([(4S)-4-amino-4-carboxybutanoyl]amino)hexanoic acid","type":"exact"},{"name":"2-azanyl-6-([4-azanyl-4-carboxybutanoyl]azanyl)hexanoic acid","type":"exact"},{"name":"5-glutamyl N6-lysine","type":"exact"},{"name":"CROSSLNK Isoglutamyl lysine isopeptide (Lys-Gln)","type":"exact"},{"name":"N alpha -(gamma-Glutamyl)-lysine","type":"exact"},{"name":"N(epsilon)-(gamma-glutamyl)lysine","type":"exact"},{"name":"N6-(L-isoglutamyl)-L-lysine","type":"exact"},{"name":"XLNK-N6Lys-5Glu(Gln)","type":"exact"}],"termid":"MOD:00133"}


id: PBO:0004345
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HVA22/TB2/DP1 family protein","termid":"PBO:0004345"}


id: MONDO:1012808
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any inherited eye defect that occurs in dogs due to a mutation in the SIX6 gene.","definition_xrefs":["PMID:31207931"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disorder of visual system, non-human animal","termid":"MONDO:1011316"},{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital eye malformation, SIX6-related, dog","secondary_identifiers":["OMIA:002208-9615"],"synonyms":[{"name":"congenital eye malformation, dog","type":"related"},{"name":"eye malformation, SIX6-related, dog","type":"exact"}],"termid":"MONDO:1012808","xrefs":{"Monarch":{"xref_id":"1012808"}}}


id: PBO:0078863
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transient receptor potential cation channel subfamily C member 7","termid":"PBO:0078863"}


id: GO:0048143
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A change in morphology and behavior of an astrocyte resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor.","definition_xrefs":["GOC:mgi_curators","PMID:10526094","PMID:10695728","PMID:12580336","PMID:9585813","PMID:12529254"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glial cell activation","termid":"GO:0061900"},{"relation_name":"part_of","term_name":"astrocyte development","termid":"GO:0014002"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"astrocyte activation","termid":"GO:0048143"}


id: GO:0045559
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of TRAIL-R2 (TNF-related apoptosis inducing ligand receptor 2), which engages a caspase-dependent apoptotic pathway and mediates apoptosis via the intracellular adaptor molecule FADD/MORT1.","definition_xrefs":["GOC:go_curators","PMID:9311998"],"gene_count":0,"genotype_count":0,"name":"obsolete TRAIL receptor 2 biosynthetic process (obsolete GO:0045559)","synonyms":[{"name":"TRAIL receptor 2 anabolism","type":"exact"},{"name":"TRAIL receptor 2 biosynthesis","type":"exact"},{"name":"TRAIL receptor 2 formation","type":"exact"},{"name":"TRAIL receptor 2 synthesis","type":"exact"},{"name":"tumor necrosis factor receptor superfamily member 10B biosynthetic process","type":"exact"}],"termid":"GO:0045559"}


id: MONDO:0015269
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Symmetrical thalamic calcifications are clinically distinguished by a low Apgar score, spasticity or marked hypotonia, weak or absent cry, poor feeding, and facial diplegia or weakness.","definition_xrefs":["Orphanet:1314"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system disorder","termid":"MONDO:0005071"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"symmetrical thalamic calcifications","secondary_identifiers":["SCTID:719164000","MEDGEN:930583","UMLS:C4304914","GARD:5070"],"synonyms":[{"name":"bilateral symmetrical thalamic gliosis","type":"exact"}],"termid":"MONDO:0015269","xrefs":{"Monarch":{"xref_id":"0015269"}}}


id: MONDO:0850353
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A prostate carcinoma that is characterized by continued growth and spread despite the surgical removal of the testes or medical intervention to block androgen production.","definition_xrefs":["DOID:0080909"],"direct_ancestors":[{"relation_name":"is_a","term_name":"prostate carcinoma","termid":"MONDO:0005159"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"castration-resistant prostate carcinoma","secondary_identifiers":["MEDGEN:730224","UMLS:C1328504","NCIT:C130234"],"termid":"MONDO:0850353","xrefs":{"Monarch":{"xref_id":"0850353"}}}


id: MONDO:0003669
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant germ cell tumor arising from the testis. It is believed that it is derived from the sexually undifferentiated embryonic gonad. Treatment with radiotherapy is highly successful when the tumor is diagnosed in localized stages, which represents the majority of presentations of seminoma.","definition_xrefs":["NCIT:C7328"],"direct_ancestors":[{"relation_name":"is_a","term_name":"testicular pure germ cell tumor","termid":"MONDO:0002874"},{"relation_name":"is_a","term_name":"seminoma","termid":"MONDO:0003001"},{"relation_name":"is_a","term_name":"malignant testicular germ cell tumor","termid":"MONDO:0003510"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"testicular seminoma","secondary_identifiers":["EFO:0003101","UMLS:C5551428","HP:0100617","MEDGEN:1790467","DOID:5842","Orphanet:842","ICD9:186.9","GARD:4792","SCTID:255107005"],"synonyms":[{"name":"seminoma of testis","type":"exact"},{"name":"seminoma of the testis","type":"exact"},{"name":"seminoma testis","type":"exact"},{"name":"seminomatous germ cell tumor of testis","type":"exact"},{"name":"seminomatous germ cell tumour of testis","type":"exact"},{"name":"testicular seminoma","type":"exact"},{"name":"testicular seminoma (disease)","type":"exact"},{"name":"testicular seminoma Pure","type":"exact"},{"name":"testicular seminomatous germ cell tumor","type":"exact"},{"name":"testicular seminomatous germ cell tumour","type":"exact"},{"name":"testis seminoma","type":"exact"}],"termid":"MONDO:0003669","xrefs":{"Monarch":{"xref_id":"0003669"}}}


id: PBO:0062799
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OS9 endoplasmic reticulum lectin","termid":"PBO:0062799"}


id: FYPO:0005489
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a protein that is not normally found in the vacuolar membrane is observed there.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein mislocalized to vacuole","termid":"FYPO:0005514"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"protein mislocalized to vacuolar membrane","synonyms":[{"name":"ectopic protein localization to vacuolar membrane","type":"exact"},{"name":"protein mislocalised to vacuolar membrane","type":"exact"},{"name":"protein mislocalised to vacuolar membrane during vegetative growth","type":"exact"},{"name":"protein mislocalized to vacuolar membrane during mitotic cell cycle","type":"related"},{"name":"protein mislocalized to vacuolar membrane during vegetative growth","type":"exact"},{"name":"protein mislocalized to vacuole membrane","type":"exact"}],"termid":"FYPO:0005489"}


id: FYPO:0003265
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of alpha,alpha-trehalase activity increases normally (i.e. as in wild type) as a result of a heat stress.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal alpha,alpha-trehalase activity","termid":"FYPO:0001480"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000257","FYPO:0000652"],"is_obsolete":false,"name":"normal alpha,alpha-trehalase activity increase during cellular response to heat stress","synonyms":[{"name":"normal increase in trehalase activity in response to heat stress","type":"exact"},{"name":"normal neutral trehalase activity increase during cellular response to heat stress","type":"exact"},{"name":"normal trehalase activity increase during cellular response to heat stress","type":"broad"}],"termid":"FYPO:0003265"}


id: PBO:0006175
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_input","termid":"PBO:0006175"}


id: RO:0002109
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Relation between a muscle and a motor neuron that synapses to it via a type Ib bouton.","direct_ancestors":[{"relation_name":"is_a","term_name":"synapsed_by","termid":"RO:0002103"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synapsed_by_via_type_Ib_bouton","termid":"RO:0002109"}


id: GO:0016720
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (9Z,12Z)-octadecadienoyl-containing glycerolipid + 2 Fe(II)-[cytochrome b5] + 2 H+ + O2 = a (9Z)-octadec-9-en-12-ynoyl-containing glycerolipid + 2 Fe(III)-[cytochrome b5] + 2 H2O.","definition_xrefs":["RHEA:46552"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water","termid":"GO:0016717"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"acyl-lipid Delta(12)-acetylenase","secondary_identifiers":["EC:1.14.19.39","KEGG_REACTION:R05740","MetaCyc:1.14.99.33-RXN"],"synonyms":[{"name":"D12-fatty acid dehydrogenase activity","type":"exact"},{"name":"Delta12 fatty acid acetylenase","type":"exact"},{"name":"delta12-fatty acid dehydrogenase activity","type":"related"},{"name":"linoleate delta-12-fatty acid acetylenase (desaturase) activity","type":"exact"}],"termid":"GO:0016720"}


id: FYPO:0001367
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which cytokinesis is normal (i.e. indistinguishable from wild type). Cytokinesis is part of the cell cycle and results in the division of the cytoplasm of a cell and its separation into two daughter cells.","definition_xrefs":["PomBase:mah","GO:0000281"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal mitotic cell cycle process","termid":"FYPO:0002741"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000257","FYPO:0001312"],"is_obsolete":false,"name":"normal cytokinesis","synonyms":[{"name":"normal cell cycle cytokinesis","type":"exact"},{"name":"normal cytokinesis during mitotic cell cycle","type":"related"},{"name":"normal cytokinesis during vegetative growth","type":"exact"},{"name":"normal mitotic cytokinesis","type":"exact"}],"termid":"FYPO:0001367"}


id: MONDO:0010567
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"X-linked disease","termid":"MONDO:0000425"},{"relation_name":"is_a","term_name":"cone dystrophy","termid":"MONDO:0000455"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"cone dystrophy, X-linked, with tapetal-like sheen","secondary_identifiers":["MEDGEN:336776","UMLS:C1844775","GARD:10119","OMIM:304030","MESH:C535975"],"synonyms":[{"name":"X-linked recessive cone dystrophy with tapetal-like sheen","type":"related"},{"name":"cone dystrophy X-linked with tapetal-like sheen","type":"related"},{"name":"cone dystrophy, X-linked, with tapetal-like sheen","type":"exact"}],"termid":"MONDO:0010567","xrefs":{"Monarch":{"xref_id":"0010567"}}}


id: GO:0001015
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The synthesis of small nucleolar RNA (snoRNA) from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter.","definition_xrefs":["GOC:txnOH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription by RNA polymerase II","termid":"GO:0006366"},{"relation_name":"is_a","term_name":"sno(s)RNA transcription","termid":"GO:0009302"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0016074"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0006351","GO:0016074"],"is_obsolete":false,"name":"snoRNA transcription by RNA polymerase II","synonyms":[{"name":"snoRNA transcription from an RNA polymerase II promoter","type":"exact"}],"termid":"GO:0001015"}


id: FYPO:0003553
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of an RNA catabolic process is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_output","term_name":"decreased RNA level","termid":"FYPO:0000826"},{"relation_name":"is_a","term_name":"abnormal RNA catabolic process","termid":"FYPO:0003551"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000294","FYPO:0000002"],"is_obsolete":false,"name":"increased RNA catabolic process","synonyms":[{"name":"increased RNA breakdown","type":"exact"},{"name":"increased RNA catabolism","type":"exact"},{"name":"increased RNA degradation","type":"exact"}],"termid":"FYPO:0003553"}


id: MONDO:0002571
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A non-Hodgkin or Hodgkin lymphoma that arises in the brain or spinal cord as a primary lesion. There is no evidence of lymphoma outside the central nervous system at the time of diagnosis.","definition_xrefs":["NCIT:C9301"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune system cancer","termid":"MONDO:0000621"},{"relation_name":"is_a","term_name":"central nervous system cancer","termid":"MONDO:0002714"},{"relation_name":"is_a","term_name":"central nervous system hematopoietic neoplasm","termid":"MONDO:0003641"},{"relation_name":"is_a","term_name":"neoplasm of mature B-cells","termid":"MONDO:0004949"},{"relation_name":"is_a","term_name":"primary organ-specific lymphoma","termid":"MONDO:0017207"},{"relation_name":"is_a","term_name":"Epstein-Barr virus-associated malignant lymphoproliferative disorder","termid":"MONDO:0017343"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570","MONDO:0004992"],"is_obsolete":false,"name":"primary central nervous system lymphoma","secondary_identifiers":["DOID:3234","MedDRA:10036685","MONDO:0018732","GARD:9318","ICD9:200.5","MEDGEN:79187","icd11.foundation:1133193893","UMLS:C0280803","EFO:1000157","SCTID:307649006","NORD:2002","Orphanet:46135","ONCOTREE:PCNSL"],"synonyms":[{"name":"CNS lymphoma","type":"exact"},{"name":"PCNSL","type":"exact"},{"name":"central nervous system lymphoma","type":"exact"},{"name":"lymphoma of central nervous system","type":"exact"},{"name":"malignant lymphomas of CNS","type":"exact"},{"name":"malignant lymphomas of the CNS","type":"exact"},{"name":"microglioma","type":"exact"},{"name":"primary CNS lymphoma","type":"exact"},{"name":"primary brain lymphoma","type":"exact"},{"name":"primary central nervous system lymphoma","type":"exact"},{"name":"primary lymphoma, CNS","type":"related"}],"termid":"MONDO:0002571","xrefs":{"Monarch":{"xref_id":"0002571"}}}


id: PBO:0065853
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB11 family interacting protein 4","termid":"PBO:0065853"}


id: PBO:0004736
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.1.1.17","termid":"PBO:0004736"}


id: GO:0016468
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: ATP + H2O + Na+(in) = ADP + phosphate + Na+(out). Found in eukaryotic mitochondria and chloroplasts and in bacteria.","definition_xrefs":["TC:3.A.2.1.2"],"gene_count":0,"genotype_count":0,"name":"obsolete sodium-translocating F-type ATPase activity (obsolete GO:0016468)","synonyms":[{"name":"ATP synthase","type":"broad"},{"name":"sodium-translocating F-type ATPase activity","type":"exact"}],"termid":"GO:0016468"}


id: MONDO:0012506
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any familial isolated arrhythmogenic right ventricular dysplasia in which the cause of the disease is a mutation in the DSC2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"cardioectodermal syndrome","termid":"MONDO:0100080"},{"relation_name":"is_a","term_name":"familial isolated arrhythmogenic right ventricular dysplasia","termid":"MONDO:0016342"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"arrhythmogenic right ventricular dysplasia 11","secondary_identifiers":["OMIM:610476","UMLS:C1864850","DOID:0110082","MEDGEN:351237","MESH:C566471"],"synonyms":[{"name":"ARVC11","type":"exact"},{"name":"ARVD11","type":"exact"},{"name":"DSC2 familial isolated arrhythmogenic right ventricular dysplasia","type":"exact"},{"name":"arrhythmogenic right ventricular cardiomyopathy 11","type":"exact"},{"name":"arrhythmogenic right ventricular dysplasia 11","type":"exact"},{"name":"arrhythmogenic right ventricular dysplasia 11 with mild palmoplantar keratoderma and woolly hair","type":"exact"},{"name":"arrhythmogenic right ventricular dysplasia 11 with mild palmoplantar keratoderma and wooly hair","type":"exact"},{"name":"arrhythmogenic right ventricular dysplasia type 11","type":"exact"},{"name":"arrhythmogenic right ventricular dysplasia, familial, 11","type":"related"},{"name":"arrhythmogenic right ventricular dysplasia, familial, 11, and mild palmoplantar keratoderma with or without woolly hair","type":"related"},{"name":"arrhythmogenic right ventricular dysplasia, familial, 11, and mild palmoplantar keratoderma with or without wooly hair","type":"related"},{"name":"arrhythmogenic right ventricular dysplasia, familial, 11, with mild palmoplantar keratoderma and woolly hair","type":"related"},{"name":"arrhythmogenic right ventricular dysplasia, familial, 11, with mild palmoplantar keratoderma and wooly hair","type":"related"},{"name":"arrhythmogenic right ventricular dysplasia, familial, type 11","type":"exact"},{"name":"familial arrhythmogenic right ventricular dysplasia 11","type":"exact"},{"name":"familial isolated arrhythmogenic right ventricular dysplasia caused by mutation in DSC2","type":"exact"}],"termid":"MONDO:0012506","xrefs":{"Monarch":{"xref_id":"0012506"}}}


id: MONDO:0006158
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A diffuse large B-cell lymphoma that arises from the colon or rectum.","definition_xrefs":["NCIT:C96503"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune system cancer","termid":"MONDO:0000621"},{"relation_name":"is_a","term_name":"diffuse large B-cell lymphoma","termid":"MONDO:0018905"},{"relation_name":"is_a","term_name":"colorectal lymphoma","termid":"MONDO:0024656"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0005570","MONDO:0004335","MONDO:0005046"],"is_obsolete":false,"name":"colorectal diffuse large B-cell lymphoma","secondary_identifiers":["UMLS:C3272827","EFO:1000191","MEDGEN:474460"],"synonyms":[{"name":"colorectal DLBCL","type":"exact"},{"name":"colorectal diffuse large B-cell lymphoma","type":"exact"},{"name":"colorectum diffuse large B-cell lymphoma","type":"exact"},{"name":"diffuse large B-cell lymphoma of colorectum","type":"exact"}],"termid":"MONDO:0006158","xrefs":{"Monarch":{"xref_id":"0006158"}}}


id: PBO:0003651
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"random septum position protein Rsp1","termid":"PBO:0003651"}


id: PR:Q10444
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- exg2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10444"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucan 1,3-beta-glucosidase 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC12B10.11","synonyms":[{"name":"Exo-1,3-beta-glucanase 2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-exg2","type":"exact"}],"termid":"PR:Q10444"}


id: GO:0060707
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a trophoblast giant cell of the placenta. Trophoblast giant cells are the cell of the placenta that line the maternal decidua.","definition_xrefs":["GOC:dph","PMID:16269175"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation involved in embryonic placenta development","termid":"GO:0060706"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"trophoblast giant cell differentiation","termid":"GO:0060707"}


id: PBO:0034099
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-in_branching_relationship_with","termid":"PBO:0034099"}


id: MONDO:1012035
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"cardiomyopathy and woolly haircoat syndrome, non-human animal","termid":"MONDO:1011641"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cardiomyopathy and woolly haircoat syndrome, cattle","secondary_identifiers":["OMIA:000161-9913"],"termid":"MONDO:1012035","xrefs":{"Monarch":{"xref_id":"1012035"}}}


id: MONDO:0019956
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An acute inflammatory process affecting the brain parenchyma. Causes include viral infections and less frequently bacterial infections, toxins, and immune-mediated processes.","definition_xrefs":["NCIT:C26760"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"viral infectious disease","termid":"MONDO:0005108"},{"relation_name":"is_a","term_name":"encephalomyelitis","termid":"MONDO:0005156"},{"relation_name":"is_a","term_name":"brain disorder","termid":"MONDO:0005560"},{"relation_name":"is_a","term_name":"acute disease","termid":"MONDO:0020683"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"encephalitis","secondary_identifiers":["MEDGEN:4027","ICD9:323.8","UMLS:C0014038","DOID:9588","ICD10CM:A85","ICD9:323.0","Orphanet:97275","SCTID:45170000","ICD9:323.9","MedDRA:10014581","MESH:D004660"],"synonyms":[{"name":"brain inflammation","type":"broad"}],"termid":"MONDO:0019956","xrefs":{"Monarch":{"xref_id":"0019956"}}}


id: PBO:0059201
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAS related GPR family member X8, pseudogene","termid":"PBO:0059201"}


id: FYPO:0003318
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell adhesion phenotype observed in the vegetative growth phase of the life cycle in which galactose-specific flocculation does not occur. Galactose-specific flocculation is the non-sexual aggregation of cells, mediated via the binding of cell wall proteins on one cell to galactose residues on the other.","definition_xrefs":["GO:0036349","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished galactose-specific flocculation","termid":"FYPO:0005504"},{"relation_name":"is_a","term_name":"abolished flocculation during vegetative growth","termid":"FYPO:0009112"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abolished galactose-specific flocculation during vegetative growth","synonyms":[{"name":"abolished cell-cell adhesion involved in galactose-specific flocculation during vegetative growth","type":"exact"},{"name":"abolished galactose-specific flocculation during mitotic cell cycle","type":"related"},{"name":"galactose-specific flocculation abolished during vegetative growth","type":"exact"}],"termid":"FYPO:0003318"}


id: PBO:0017918
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces specific protein Mug166","termid":"PBO:0017918"}


id: PBO:0034120
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-luminal_space_of","termid":"PBO:0034120"}


id: GO:0009378
data:
  {"annotated_genes":["SJAG_02690","SJAG_05105","SJAG_02294","SJAG_03898"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71117,78302,78449,79773],"is_not":false,"summary":null,"term":"GO:0009378"}]},"cv_name":"molecular_function","definition":"Unwinding a DNA helix of DNA containing four-way junctions, including Holliday junctions, driven by ATP hydrolysis.","definition_xrefs":["PMID:9442895","GOC:al","PMID:22723423"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA helicase activity","termid":"GO:0003678"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02294":null,"SJAG_02690":null,"SJAG_03898":null,"SJAG_05105":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140097"}],"interesting_parent_ids":["GO:0003674","GO:0016853","GO:0003824","GO:0140097"],"is_obsolete":false,"name":"four-way junction helicase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["GO:1990163"],"synonyms":[{"name":"ATP-dependent Holliday junction helicase activity","type":"narrow"},{"name":"ATP-dependent four-way junction DNA helicase activity","type":"exact"},{"name":"ATP-dependent four-way junction helicase activity","type":"exact"},{"name":"Holliday junction helicase activity","type":"narrow"}],"termid":"GO:0009378","terms_by_termid":{"GO:0009378":null}}


id: SO:0001378
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"5_taurinomethyluridine is a modified uridine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_uridine","termid":"SO:0001277"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"five_taurinomethyluridine","secondary_identifiers":["RNAMOD:098"],"synonyms":[{"name":"5-taurinomethyluridine","type":"exact"},{"name":"five taurinomethyluridine","type":"exact"},{"name":"tm5U","type":"exact"}],"termid":"SO:0001378"}


id: GO:0005551
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete ubiquitin (obsolete GO:0005551)","termid":"GO:0005551"}


id: GO:0051014
data:
  {"annotated_genes":["SJAG_03025","SJAG_03380","SJAG_03455"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[70316,101244],"is_not":false,"summary":null,"term":"GO:0051014"},{"annotations":[74775],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071846"}]},"cv_name":"biological_process","definition":"The process in which an actin filament is broken down into smaller filaments.","definition_xrefs":["GOC:ai","PMID:14657234"],"direct_ancestors":[{"relation_name":"is_a","term_name":"actin filament-based process","termid":"GO:0030029"}],"gene_count":3,"genes_by_uniquename":{"SJAG_03025":null,"SJAG_03380":null,"SJAG_03455":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"actin filament severing","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"F-actin severing","type":"exact"},{"name":"actin filament severing activity","type":"related"},{"name":"barbed-end actin capping/severing activity","type":"related"}],"termid":"GO:0051014","terms_by_termid":{"GO:0051014":null,"GO:0071846":null}}


id: GO:0006073
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues, occurring at the level of an individual cell.","definition_xrefs":["ISBN:0198547684"],"gene_count":0,"genotype_count":0,"name":"obsolete cellular glucan metabolic process (obsolete GO:0006073)","synonyms":[{"name":"cellular glucan metabolism","type":"exact"}],"termid":"GO:0006073"}


id: GO:0004649
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of poly(ADP-ribose) at glycosidic (1''-2') linkage of ribose-ribose bond to produce free ADP-ribose.","definition_xrefs":["EC:3.2.1.143"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0016798","GO:0003674"],"is_obsolete":false,"name":"poly(ADP-ribose) glycohydrolase activity","secondary_identifiers":["Reactome:R-HSA-8952903","MetaCyc:3.2.1.143-RXN","Reactome:R-HSA-5651828","RHEA:52216"],"termid":"GO:0004649"}


id: PBO:0111916
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"surfeit locus (SURF40 family)","termid":"PBO:0111916"}


id: GO:0016716
data:
  {"annotated_genes":["SJAG_03018","SJAG_04913","SJAG_05311"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[70201],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000254"},{"annotations":[72792],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0080132"},{"annotations":[92133,112871],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0102772"}]},"cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and one atom of oxygen is incorporated into one donor.","definition_xrefs":["EC:1.14.18.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monooxygenase activity","termid":"GO:0004497"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen","termid":"GO:0016705"}],"gene_count":3,"genes_by_uniquename":{"SJAG_03018":null,"SJAG_04913":null,"SJAG_05311":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0016716","terms_by_termid":{"GO:0000254":null,"GO:0080132":null,"GO:0102772":null}}


id: PBO:0054479
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1879","termid":"PBO:0054479"}


id: GO:0007049
data:
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id: GO:1990846
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  {"annotated_genes":["SJAG_02874","SJAG_01348"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[95814,97404],"is_not":false,"summary":null,"term":"GO:1990846"}]},"cv_name":"molecular_function","definition":"Binds to and stops, prevents or reduces the activity of ribonucleoside-diphosphate reductase.","definition_xrefs":["PMID:16317005"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme inhibitor activity","termid":"GO:0004857"},{"relation_name":"negatively_regulates","term_name":"ribonucleoside-diphosphate reductase activity","termid":"GO:0061731"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01348":null,"SJAG_02874":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0004857"},{"rel_name":"is_a","termid":"GO:0140678"},{"rel_name":"negatively_regulates","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"regulates","termid":"GO:0016491"},{"rel_name":"regulates","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0030234","GO:0003674","GO:0016491","GO:0004857","GO:0098772","GO:0140678"],"is_obsolete":false,"name":"ribonucleoside-diphosphate reductase inhibitor activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1990846","terms_by_termid":{"GO:1990846":null}}


id: SO:0001285
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"N4-acetylcytidine is a modified cytidine.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_cytidine","termid":"SO:0001275"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N4_acetylcytidine","secondary_identifiers":["RNAMOD:024"],"synonyms":[{"name":"N4 acetylcytidine","type":"exact"},{"name":"N4-acetylcytidine","type":"exact"},{"name":"ac4C","type":"exact"}],"termid":"SO:0001285"}


id: PBO:0003336
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inositol-polyphosphate 5-phosphatase, synaptojanin homolog 2 (predicted)","termid":"PBO:0003336"}


id: GO:0120519
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + N-terminal L-methionyl-[tubulin] = CoA + H+ + N-terminal N(alpha)-acetyl-L-methionyl-[tubulin]. The N-terminus of both alpha- and beta-tubulin are acetylated.","definition_xrefs":["EC:2.3.1.308","RHEA:69607"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-N-terminal amino-acid acetyltransferase activity","termid":"GO:0004596"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0034212"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0034212","GO:0003824","GO:0016746"],"is_obsolete":false,"name":"tubulin N-terminal-methionine acetyltransferase activity","secondary_identifiers":["KEGG_REACTION:R12978","MetaCyc:RXN-22633"],"synonyms":[{"name":"tubulin N-terminal N-acetyltransferase activity","type":"exact"}],"termid":"GO:0120519"}


id: GO:0106340
data:
  {"annotated_genes":["SJAG_01269"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[66070],"is_not":false,"summary":null,"term":"GO:0106340"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: cytidine(32)/guanosine(34) in tRNA + 2 S-adenosyl-L-methionine = 2'-O-methylcytidine(32)/2'-O-methylguanosine(34) in tRNA + 2 H+ + 2 S-adenosyl-L-homocysteine.","definition_xrefs":["RHEA:42396"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA (guanine) methyltransferase activity","termid":"GO:0016423"},{"relation_name":"is_a","term_name":"tRNA (cytidine) methyltransferase activity","termid":"GO:0016427"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01269":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0003824","GO:0016741","GO:0140098","GO:0140101"],"is_obsolete":false,"name":"tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase activity","references_by_uniquename":{"GO_REF:0000003":null},"secondary_identifiers":["Reactome:R-HSA-9024161","EC:2.1.1.205"],"synonyms":[{"name":"tRNA (cytidine 32-2'-O)-methyltransferase activity","type":"narrow"},{"name":"tRNA (cytidine(32)-2'-O)-methyltransferase activity","type":"narrow"},{"name":"tRNA (guanosine 34-2'-O)-methyltransferase activity","type":"narrow"},{"name":"tRNA (guanosine(34)-2'-O)-methyltransferase activity","type":"narrow"}],"termid":"GO:0106340","terms_by_termid":{"GO:0106340":null}}


id: PBO:0050113
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group box 1 pseudogene 23","termid":"PBO:0050113"}


id: GO:0034119
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of erythrocyte aggregation.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of homotypic cell-cell adhesion","termid":"GO:0034111"},{"relation_name":"is_a","term_name":"regulation of erythrocyte aggregation","termid":"GO:0034118"},{"relation_name":"negatively_regulates","term_name":"erythrocyte aggregation","termid":"GO:0034117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007155"},{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"negative regulation of erythrocyte aggregation","synonyms":[{"name":"negative regulation of RBC aggregation","type":"exact"},{"name":"negative regulation of red blood cell aggregation","type":"exact"}],"termid":"GO:0034119"}


id: PBO:0057245
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 449b","termid":"PBO:0057245"}


id: MONDO:0035407
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"furuncular myiasis","termid":"MONDO:0018941"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"furuncular myiasis due to Cordylobia anthropophaga","secondary_identifiers":["Orphanet:563687","GARD:22260","UMLS:C4511624","MEDGEN:1386398","ICD10CM:B87.0"],"synonyms":[{"name":"furunculoid myiasis due to Cordylobia anthropophaga","type":"exact"},{"name":"furunculous myiasis due to Cordylobia anthropophaga","type":"exact"}],"termid":"MONDO:0035407","xrefs":{"Monarch":{"xref_id":"0035407"}}}


id: PBO:0058504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 5694","termid":"PBO:0058504"}


id: MOD:01448
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts a source amino acid residue to L-3,3-dihydroxyoalanine.","definition_xrefs":["RESID:AA0492","PubMed:11435113","PubMed:17558559"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified residue that can arise from different natural residues","termid":"MOD:00859"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-3,3-dihydroxyoalanine","synonyms":[{"name":"(S)-2-amino-3,3-dihydroxypropanoic acid","type":"exact"},{"name":"2-(dihydroxymethyl)glycine","type":"exact"},{"name":"3,3-dihydroxy-L-alanine","type":"exact"},{"name":"3,3-dihydroxyalanine","type":"exact"},{"name":"3-hydroxy-L-serine","type":"exact"},{"name":"3-oxoalanine hydrate","type":"exact"},{"name":"C(alpha)-formylglycine hydrate","type":"related"}],"termid":"MOD:01448"}


id: GO:1903894
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the IRE1-mediated unfolded protein response.","definition_xrefs":["GOC:bf","GO_REF:0000058","PMID:22013210","GOC:PARL","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of endoplasmic reticulum unfolded protein response","termid":"GO:1900101"},{"relation_name":"regulates","term_name":"IRE1-mediated unfolded protein response","termid":"GO:0036498"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of IRE1-mediated unfolded protein response","synonyms":[{"name":"regulation of ERN1-mediated unfolded protein response","type":"related"},{"name":"regulation of IRE1 branch of UPR","type":"exact"},{"name":"regulation of IRE1 signal transduction pathway","type":"broad"},{"name":"regulation of IRE1 signaling in response to endoplasmic reticulum stress","type":"related"},{"name":"regulation of IRE1alpha unfolded protein response","type":"narrow"},{"name":"regulation of IRE1p unfolded protein response","type":"narrow"},{"name":"regulation of UPR signaling by IRE1 stress sensor","type":"exact"},{"name":"regulation of endoplasmic reticulum unfolded protein response; IRE1 signaling","type":"exact"},{"name":"regulation of inositol-requiring transmembrane kinase/endonuclease signal transduction","type":"related"}],"termid":"GO:1903894"}


id: SO:0000939
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Feature used for the recombination of genomic material for the purpose of generating diversity of the immune system.","direct_ancestors":[{"relation_name":"is_a","term_name":"vertebrate_immune_system_gene_recombination_feature","termid":"SO:0000301"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vertebrate_immune_system_gene_recombination_signal_feature","synonyms":[{"name":"vertebrate immune system gene recombination signal feature","type":"exact"}],"termid":"SO:0000939"}


id: PBO:0066558
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulator of G protein signaling 21","termid":"PBO:0066558"}


id: PBO:0074586
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 3B","termid":"PBO:0074586"}


id: MONDO:0009933
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital pulmonary lymphangiectasia (PL) is a rare developmental disorder involving the lung and characterized by pulmonary subpleural, interlobar, perivascular, and peribronchial lymphatic dilatation.","definition_xrefs":["Orphanet:2414"],"direct_ancestors":[{"relation_name":"is_a","term_name":"respiratory system disorder","termid":"MONDO:0005087"},{"relation_name":"is_a","term_name":"lymphangiectasis","termid":"MONDO:0006840"},{"relation_name":"is_a","term_name":"primary lymphedema","termid":"MONDO:0019175"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"congenital pulmonary lymphangiectasia","secondary_identifiers":["NORD:1054","NCIT:C99034","OMIM:265300","MESH:C537727","SCTID:45142002","UMLS:C1849554","GARD:9900","MEDGEN:340355","icd11.foundation:2069435755"],"synonyms":[{"name":"CPL","type":"related"},{"name":"Diffuse Pulmonary Lymphangiomatosis","type":"exact"},{"name":"congenital pulmonary lymphangiectasis","type":"exact"},{"name":"lymphangiectasia pulmonary congenital","type":"related"},{"name":"lymphangiectasia, pulmonary, congenital","type":"related"},{"name":"lymphangiomatosis pulmonary","type":"related"},{"name":"lymphangiomatosis, pulmonary","type":"related"},{"name":"pulmonary cystic lymphangiectasis","type":"related"},{"name":"pulmonary lymphangiomatosis","type":"exact"}],"termid":"MONDO:0009933","xrefs":{"Monarch":{"xref_id":"0009933"}}}


id: PBO:0004720
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"importin alpha","termid":"PBO:0004720"}


id: PR:O14216
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DNA replication regulator sld2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PMID:11937031","PomBase:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA replication regulator sld2","termid":"PR:000027523"},{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA replication regulator sld2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6B12.11","secondary_identifiers":["UniProtKB:O14216","PR:000027524"],"synonyms":[{"name":"DNA replication regulator drc1","type":"exact"},{"name":"SPAC6B12.11","type":"related"},{"name":"Spom972h-SLD2","type":"exact"}],"termid":"PR:O14216"}


id: PBO:0073309
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SERPINE1 mRNA binding protein 1 pseudogene 5","termid":"PBO:0073309"}


id: PBO:0050352
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 55","termid":"PBO:0050352"}


id: PBO:0056943
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 9-3","termid":"PBO:0056943"}


id: PBO:0000806
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine hydrolase-like","termid":"PBO:0000806"}


id: PR:Q9Y805
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A pre-mRNA-splicing factor CWC25 homolog that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02673"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre-mRNA-splicing factor cwf25 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC146.05c","secondary_identifiers":["UniProtKB:Q9Y805"],"synonyms":[{"name":"Spom972h-CWC25","type":"exact"},{"name":"complexed with cdc5 protein 25 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9Y805"}


id: GO:1903807
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of L-threonine from outside of a cell, across the plasma membrane and into the cytosol.","definition_xrefs":["PMID:23895341","GOC:TermGenie","GO_REF:0000075"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic cation transport","termid":"GO:0015695"},{"relation_name":"is_a","term_name":"threonine transport","termid":"GO:0015826"},{"relation_name":"is_a","term_name":"amino acid import across plasma membrane","termid":"GO:0089718"},{"relation_name":"is_a","term_name":"L-alpha-amino acid transmembrane transport","termid":"GO:1902475"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"L-threonine import across plasma membrane","secondary_identifiers":["GO:0036231"],"synonyms":[{"name":"L-threonine import","type":"broad"},{"name":"L-threonine import into cell","type":"exact"},{"name":"L-threonine uptake","type":"exact"}],"termid":"GO:1903807"}


id: FYPO:0004267
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which primary cell septum disassembly is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular process during vegetative growth","termid":"FYPO:0001319"},{"relation_name":"is_a","term_name":"normal cellular component organization","termid":"FYPO:0006003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001312","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal septum disassembly","synonyms":[{"name":"normal septum disassembly during mitotic cell cycle","type":"related"},{"name":"normal septum disassembly during vegetative growth","type":"exact"}],"termid":"FYPO:0004267"}


id: PBO:0075803
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small RNA binding exonuclease protection factor La like 2, pseudogene","termid":"PBO:0075803"}


id: PBO:0056681
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myocyte enhancer factor 2D","termid":"PBO:0056681"}


id: PBO:0049315
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutathione S-transferase theta 3, pseudogene","termid":"PBO:0049315"}


id: PBO:0062647
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 12 subfamily D member 1 (gene/pseudogene)","termid":"PBO:0062647"}


id: GO:0120539
data:
  {"annotated_genes":["SJAG_00721"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[89957],"is_not":false,"summary":null,"term":"GO:0120539"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a 4-hydroxy-3-methoxy-5-(all-trans-polyprenyl)benzoate + H+ = a 2-methoxy-6-(all-trans-polyprenyl)phenol + CO2.","definition_xrefs":["RHEA:81179","PMID:38425362","PMID:38295803"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00721":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"4-hydroxy-3-methoxy-5-polyprenylbenzoate decarboxylase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0120539","terms_by_termid":{"GO:0120539":null}}


id: PBO:0075774
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SRSF3 pseudogene 2","termid":"PBO:0075774"}


id: MONDO:0006100
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Bartholin gland carcinoma (obsolete MONDO:0006100)","synonyms":[{"name":"obsolete Bartholin gland carcinoma (disease)","type":"exact"}],"termid":"MONDO:0006100","xrefs":{"Monarch":{"xref_id":"0006100"}}}


id: PBO:0117233
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane ferric-chelate reductase (NADPH) Frp1","termid":"PBO:0117233"}


id: PBO:0038404
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-characteristic_of","termid":"PBO:0038404"}


id: PBO:0027887
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_histone_H4-K20_monomethylation","termid":"PBO:0027887"}


id: GO:0019843
data:
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id: PBO:0061082
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id: PBO:0072982
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id: GO:0004557
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id: PR:O74501
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id: PBO:0039466
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id: PBO:0076078
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id: GO:0001642
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id: FYPO:0007200
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id: PBO:0002881
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id: PBO:0060544
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id: PBO:0002625
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id: PBO:0043068
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id: GO:1905039
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id: PBO:0030671
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id: PBO:0002552
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id: PBO:0088580
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id: PBO:0109399
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id: PBO:0039025
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id: PBO:0034635
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id: PBO:0062725
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id: GO:0080172
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id: PATO:0001067
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id: PBO:0073877
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id: MONDO:1010784
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pyoderma that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyoderma, non-human animal","termid":"MONDO:1010142"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyoderma, dog","secondary_identifiers":["OMIA:001877-9615"],"termid":"MONDO:1010784","xrefs":{"Monarch":{"xref_id":"1010784"}}}


id: MONDO:0013551
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any hereditary spastic paraplegia in which the cause of the disease is a mutation in the AP4B1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary spastic paraplegia","termid":"MONDO:0019064"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"hereditary spastic paraplegia 47","secondary_identifiers":["NCIT:C164224","DOID:0110799","NORD:1993","UMLS:C3279738","OMIM:614066","GARD:15749","MEDGEN:481368"],"synonyms":[{"name":"AP4B1 hereditary spastic paraplegia","type":"exact"},{"name":"CPSQ5","type":"exact"},{"name":"SPG47","type":"exact"},{"name":"Spastic Paraplegia 47","type":"exact"},{"name":"autosomal recessive spastic paraplegia 47","type":"exact"},{"name":"cerebral palsy, spastic quadriplegic, 5","type":"related"},{"name":"cerebral palsy, spastic quadriplegic, 5, formerly","type":"related"},{"name":"hereditary spastic paraplegia 47","type":"exact"},{"name":"hereditary spastic paraplegia caused by mutation in AP4B1","type":"exact"},{"name":"hereditary spastic paraplegia type 47","type":"exact"},{"name":"spastic paraplegia 47, autosomal recessive","type":"related"},{"name":"spastic quadriplegic cerebral palsy 5","type":"exact"}],"termid":"MONDO:0013551","xrefs":{"Monarch":{"xref_id":"0013551"}}}


id: GO:0072487
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A histone acetyltransferase complex that catalyzes the acetylation of a histone H4 lysine residue at position 16. In human, it contains the catalytic subunit MOF, and MSL1, MSL2 and MSL3.","definition_xrefs":["PMID:20018852","PMID:16227571"],"direct_ancestors":[{"relation_name":"is_a","term_name":"H4 histone acetyltransferase complex","termid":"GO:1902562"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005694"],"is_obsolete":false,"name":"MSL complex","termid":"GO:0072487"}


id: GO:0097422
data:
  {"annotated_genes":["SJAG_01309"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[75023],"is_not":false,"summary":null,"term":"GO:0097422"}]},"cv_name":"cellular_component","definition":"A network of fine tubules in the vicinity of the Golgi complex and around the centriole.","definition_xrefs":["NIF_Subcellular:sao1570660411","NIF_Subcellular:sao694815499","PMID:11896161"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"endosome","termid":"GO:0005768"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01309":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005768"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005768","GO:0005737","GO:0031410","GO:0005575"],"is_obsolete":false,"name":"tubular endosome","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"coated tip","type":"related"}],"termid":"GO:0097422","terms_by_termid":{"GO:0097422":null}}


id: PBO:0054151
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1518","termid":"PBO:0054151"}


id: PBO:0076988
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"THAP domain containing 5 pseudogene 1","termid":"PBO:0076988"}


id: MONDO:0100201
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A vertebral column disorder caused by degeneration of intervertebral disks of the lumbar spine. One of the most common musculoskeletal disorders, it has strong genetic determinants.","definition_xrefs":["OMIM:603932"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vertebral column disorder","termid":"MONDO:0000812"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lumbar disk disease","secondary_identifiers":["UMLS:C0221775","MEDGEN:67462"],"termid":"MONDO:0100201","xrefs":{"Monarch":{"xref_id":"0100201"}}}


id: MONDO:0020500
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Marburg hemorrhagic fever (MHF), caused by Marburg virus, is a severe viral hemorrhagic disease characterized by initial fever and malaise followed by gastrointestinal symptoms, bleeding, shock, and multi-organ system failure.","definition_xrefs":["Orphanet:99826"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Filoviridae infectious disease","termid":"MONDO:0005762"},{"relation_name":"is_a","term_name":"viral hemorrhagic fever","termid":"MONDO:0018087"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Marburg hemorrhagic fever","secondary_identifiers":["EFO:0007358","GARD:9444","DOID:4327","NCIT:C84883","SCTID:77503002","UMLS:C0024788","icd11.foundation:696598707","MedDRA:10026822","MEDGEN:9888","ICD9:078.89","MESH:D008379"],"synonyms":[{"name":"Green monkey disease","type":"exact"},{"name":"MHF","type":"exact"},{"name":"Marburg disease","type":"exact"},{"name":"Marburg virus disease","type":"exact"}],"termid":"MONDO:0020500","xrefs":{"Monarch":{"xref_id":"0020500"}}}


id: PBO:0058063
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4283-1","termid":"PBO:0058063"}


id: PATO:0001875
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's having three angles.","definition_xrefs":["wordreference:wordreference"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2-D shape","termid":"PATO:0002006"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"triangular","synonyms":[{"name":"delta shaped","type":"related"},{"name":"deltoid","type":"exact"},{"name":"triangle","type":"related"},{"name":"triangle-shaped","type":"related"}],"termid":"PATO:0001875"}


id: PBO:0056223
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAGE family member D4","termid":"PBO:0056223"}


id: PBO:0000678
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Tim9-Tim10 complex subunit Tim10 (predicted)","termid":"PBO:0000678"}


id: PBO:0066766
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 64","termid":"PBO:0066766"}


id: PBO:0088186
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Zinc-finger protein; involved in transcriptional control of both nuclear and mitochondrial genes, many of which specify products required for glycerol-based growth, respiration, and other functions; RSF2 has a paralog, TDA9, that arose from the whole genome duplication; relocalizes from nucleus to cytoplasm upon DNA replication stress","termid":"PBO:0088186"}


id: GO:0030968
data:
  {"annotated_genes":["SJAG_00226","SJAG_00530","SJAG_03841","SJAG_01516","SJAG_04262","SJAG_04118","SJAG_04103","SJAG_00681","SJAG_01768","SJAG_04435","SJAG_03611","SJAG_04283","SJAG_03482","SJAG_04471","SJAG_00790","SJAG_02601"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[68498,70999,71589,76744,77571,99037,101558,107496,114137,114405,114538,116358,117107,117556],"is_not":false,"summary":null,"term":"GO:0030968"},{"annotations":[93424,89842],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036498"}]},"cv_name":"biological_process","definition":"The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation.","definition_xrefs":["GOC:mah","PMID:12042763"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to endoplasmic reticulum stress","termid":"GO:0034976"},{"relation_name":"is_a","term_name":"intracellular signal transduction","termid":"GO:0035556"},{"relation_name":"part_of","term_name":"cellular response to unfolded protein","termid":"GO:0034620"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00226":null,"SJAG_00530":null,"SJAG_00681":null,"SJAG_00790":null,"SJAG_01516":null,"SJAG_01768":null,"SJAG_02601":null,"SJAG_03482":null,"SJAG_03611":null,"SJAG_03841":null,"SJAG_04103":null,"SJAG_04118":null,"SJAG_04262":null,"SJAG_04283":null,"SJAG_04435":null,"SJAG_04471":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"endoplasmic reticulum unfolded protein response","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-381119"],"synonyms":[{"name":"ER unfolded protein response","type":"exact"},{"name":"SREBP-mediated signalling pathway","type":"related"},{"name":"erUPR","type":"exact"}],"termid":"GO:0030968","terms_by_termid":{"GO:0030968":null,"GO:0036498":null}}


id: PBO:0055102
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2520","termid":"PBO:0055102"}


id: MONDO:0021221
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplasm (disease) that involves the vestibulocochlear nerve.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vestibulocochlear nerve disorder","termid":"MONDO:0001563"},{"relation_name":"is_a","term_name":"cranial nerve neoplasm","termid":"MONDO:0002633"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vestibulocochlear nerve neoplasm","secondary_identifiers":["SCTID:387891008","UMLS:C0346330","NCIT:C5120","MEDGEN:91099"],"synonyms":[{"name":"Vestibuloacoustic nerve neoplasms","type":"exact"},{"name":"acoustic nerve neoplasm","type":"exact"},{"name":"acoustic nerve tumor","type":"exact"},{"name":"acoustic nerve tumour","type":"exact"},{"name":"cranial nerve eight neoplasms","type":"exact"},{"name":"eighth cranial nerve neoplasm","type":"exact"},{"name":"eighth cranial nerve neoplasms","type":"exact"},{"name":"eighth cranial nerve tumor","type":"exact"},{"name":"eighth cranial nerve tumour","type":"exact"},{"name":"neoplasm of acoustic nerve","type":"exact"},{"name":"neoplasm of eighth cranial nerve","type":"exact"},{"name":"neoplasm of the acoustic nerve","type":"exact"},{"name":"neoplasm of the eighth cranial nerve","type":"exact"},{"name":"neoplasm of the vestibulocochlear nerve","type":"exact"},{"name":"neoplasm of vestibulocochlear nerve","type":"exact"},{"name":"tumor of acoustic nerve","type":"exact"},{"name":"tumor of eighth cranial nerve","type":"exact"},{"name":"tumor of the acoustic nerve","type":"exact"},{"name":"tumor of the eighth cranial nerve","type":"exact"},{"name":"tumor of the vestibulocochlear nerve","type":"exact"},{"name":"tumor of vestibulocochlear nerve","type":"exact"},{"name":"tumour of acoustic nerve","type":"exact"},{"name":"tumour of eighth cranial nerve","type":"exact"},{"name":"tumour of the acoustic nerve","type":"exact"},{"name":"tumour of the eighth cranial nerve","type":"exact"},{"name":"tumour of the vestibulocochlear nerve","type":"exact"},{"name":"tumour of vestibulocochlear nerve","type":"exact"},{"name":"vestibulocochlear nerve neoplasm (disease)","type":"exact"},{"name":"vestibulocochlear nerve neoplasms","type":"exact"},{"name":"vestibulocochlear nerve tumor","type":"exact"},{"name":"vestibulocochlear nerve tumour","type":"exact"}],"termid":"MONDO:0021221","xrefs":{"Monarch":{"xref_id":"0021221"}}}


id: GO:0102257
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 1-palmitoyl-2-linoleoyl-phosphatidylcholine + H2O = 1-linoleoyl-sn-glycero-3-phosphocholine + hexadecanoate + H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 1-16:0-2-18:2-phosphatidylcholine sn-1 acylhydrolase activity (obsolete GO:0102257)","termid":"GO:0102257"}


id: MONDO:0025061
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An acute disease of young pigs that is usually associated with weaning. It is characterized clinically by paresis and subcutaneous edema.","definition_xrefs":["MESH:D004488"],"direct_ancestors":[{"relation_name":"is_a","term_name":"swine disease","termid":"MONDO:0024990"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"edema disease of swine","synonyms":[{"name":"swine edema disease","type":"related"},{"name":"swine edema diseases","type":"related"},{"name":"swine oedema disease","type":"related"},{"name":"swine oedema diseases","type":"related"}],"termid":"MONDO:0025061","xrefs":{"Monarch":{"xref_id":"0025061"}}}


id: PBO:0059131
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"M-phase phosphoprotein 8","termid":"PBO:0059131"}


id: GO:0070013
data:
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id: GO:0120115
data:
  {"annotated_genes":["SJAG_02469","SJAG_03954","SJAG_03070","SJAG_01819","SJAG_05240","SJAG_01327","SJAG_03460"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[96138,106665,108851,113206,115261,116191,116725],"is_not":false,"summary":null,"term":"GO:0120115"}]},"cv_name":"cellular_component","definition":"A heteroheptameric, nuclear protein complex composed of Lsm2, Lsm3, Lsm4, Lsm5, Lsm6, Lsm7, and Lsm8, or orthologs thereof, that selectively binds to snRNAs, in particular U6 or U6atac snRNAs, and also to unspliced transcripts localized within the nucleus.","definition_xrefs":["GOC:bhm","PMID:23221597","PMID:27627834","GOC:krc","PMID:19121818","PMID:28768202"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Sm-like protein family complex","termid":"GO:0120114"}],"gene_count":7,"genes_by_uniquename":{"SJAG_01327":null,"SJAG_01819":null,"SJAG_02469":null,"SJAG_03070":null,"SJAG_03460":null,"SJAG_03954":null,"SJAG_05240":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"Lsm2-8 complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0120115","terms_by_termid":{"GO:0120115":null}}


id: PBO:0061747
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NXT1 antisense RNA 1","termid":"PBO:0061747"}


id: GO:0009209
data:
  {"annotated_genes":["SJAG_00533","SJAG_03708","SJAG_05024","SJAG_02887"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[63395],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044210"},{"annotations":[64613],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006241"},{"annotations":[68205,93295],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044211"},{"annotations":[64612],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006228"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of pyrimidine ribonucleoside triphosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with triphosphate on the sugar.","definition_xrefs":["ISBN:0198506732","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleoside triphosphate biosynthetic process","termid":"GO:0009148"},{"relation_name":"is_a","term_name":"ribonucleoside triphosphate biosynthetic process","termid":"GO:0009201"},{"relation_name":"is_a","term_name":"pyrimidine ribonucleoside triphosphate metabolic process","termid":"GO:0009208"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00533":null,"SJAG_02887":null,"SJAG_03708":null,"SJAG_05024":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"pyrimidine ribonucleoside triphosphate biosynthetic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000041":null,"GO_REF:0000107":null},"synonyms":[{"name":"pyrimidine ribonucleoside triphosphate anabolism","type":"exact"},{"name":"pyrimidine ribonucleoside triphosphate biosynthesis","type":"exact"},{"name":"pyrimidine ribonucleoside triphosphate formation","type":"exact"},{"name":"pyrimidine ribonucleoside triphosphate synthesis","type":"exact"}],"termid":"GO:0009209","terms_by_termid":{"GO:0006228":null,"GO:0006241":null,"GO:0044210":null,"GO:0044211":null}}


id: PBO:0073273
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin 9","termid":"PBO:0073273"}


id: FYECO:0000182
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which asparagine was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ asparagine","synonyms":[{"name":"asn added","type":"exact"}],"termid":"FYECO:0000182"}


id: PBO:0036413
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxisomal ubiquitin-protein ligase E3 involved in peroxisome organization and biogenesis (predicted)","termid":"PBO:0036413"}


id: PBO:0045944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EFR3 homolog A","termid":"PBO:0045944"}


id: PBO:0058409
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4778","termid":"PBO:0058409"}


id: PBO:0066838
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 137","termid":"PBO:0066838"}


id: PBO:0053348
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 237","termid":"PBO:0053348"}


id: PBO:0086097
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein proposed to be involved in vacuolar functions; mutant shows defect in CPY processing and fragmented vacuoles; deletion mutant has increased glycogen accumulation and displays elongated buds; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; ENV11 has a paralog, VID22, that arose from the whole genome duplication","termid":"PBO:0086097"}


id: MONDO:0011043
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myelodysplasia, immunodeficiency, facial dysmorphism, short stature, and psychomotor delay","secondary_identifiers":["UMLS:C1832442","MEDGEN:318627","MESH:C563345","OMIM:601347"],"synonyms":[{"name":"myelodysplasia, immunodeficiency, facial dysmorphism, short stature, and psychomotor delay","type":"exact"}],"termid":"MONDO:0011043","xrefs":{"Monarch":{"xref_id":"0011043"}}}


id: PBO:0113336
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; null mutant displays elevated frequency of mitochondrial genome loss; localizes to mitochondria, cytosol and to the peroxisome in a Pex5p-dependent manner in glucose","termid":"PBO:0113336"}


id: PBO:0057607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 941-4","termid":"PBO:0057607"}


id: PBO:0031867
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carboxylic acid transmembrane transporter (predicted)","termid":"PBO:0031867"}


id: MONDO:0001316
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An infectious meningitis caused by infection with Streptococcus.","definition_xrefs":["MONDO:patterns/specific_infectious_disease_by_agent"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bacterial meningitis","termid":"MONDO:0006670"},{"relation_name":"is_a","term_name":"streptococcal infection","termid":"MONDO:0021680"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"streptococcal meningitis","secondary_identifiers":["ICD10CM:G00.2","ICD9:320.2","UMLS:C0154639","DOID:11574","MEDGEN:509616","SCTID:4510004"],"synonyms":[{"name":"Streptococcus caused infectious meningitis","type":"exact"},{"name":"Streptococcus infectious meningitis","type":"exact"}],"termid":"MONDO:0001316","xrefs":{"Monarch":{"xref_id":"0001316"}}}


id: PBO:0070696
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L8 pseudogene 5","termid":"PBO:0070696"}


id: MONDO:0008876
data:
  {"annotated_genes":["SJAG_03898"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87313],"is_not":false,"summary":null,"term":"MONDO:0008876"}]},"cv_name":"mondo","definition":"Bloom syndrome (BSyn) is a rare chromosomal breakage syndrome characterized by a marked genetic instability associated with pre- and postnatal growth retardation, facial sun-sensitive telangiectatic erythema, increased susceptibility to infections, and predisposition to cancer.","definition_xrefs":["Orphanet:125"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hematologic disorder","termid":"MONDO:0005570"},{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"hereditary photodermatosis","termid":"MONDO:0015951"},{"relation_name":"is_a","term_name":"chromosomal disorder","termid":"MONDO:0019040"},{"relation_name":"is_a","term_name":"microcephaly, growth restriction and increased sister chromatid exchange","termid":"MONDO:0020629"},{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03898":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0006025","MONDO:0005570"],"is_obsolete":false,"name":"Bloom syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["NANDO:2200707","NCIT:C2903","DOID:2717","ICD10CM:Q82.2","ICD9:757.39","MESH:D001816","NORD:863","SCTID:4434006","UMLS:C0005859","OMIM:210900","GARD:915","NANDO:1200333","icd11.foundation:1838213890","MEDGEN:2685"],"synonyms":[{"name":"BLM","type":"related"},{"name":"BLS","type":"related"},{"name":"BS","type":"related"},{"name":"BSyn","type":"exact"},{"name":"Bloom syndrome","type":"exact"},{"name":"Bloom-Torre-Machacek syndrome","type":"exact"},{"name":"MGRISCE1","type":"related"},{"name":"congenital telangiectatic erythema","type":"related"},{"name":"congenital telangiectatic erythema syndrome","type":"exact"},{"name":"growth deficiency, sun-sensitive, telangiectatic, hypo and hyperpigmented skin, predisposition to malignancy and chromosomal instability","type":"related"},{"name":"microcephaly, growth restriction, and increased sister chromatid exchange 1","type":"related"}],"termid":"MONDO:0008876","terms_by_termid":{"MONDO:0008876":null},"xrefs":{"Monarch":{"xref_id":"0008876"}}}


id: FYPO:0001443
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription does not occur. All genes, or a specific subset of genes, may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased transcription during vegetative growth","termid":"FYPO:0000781"},{"relation_name":"is_a","term_name":"abolished transcription","termid":"FYPO:0002877"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0000294","FYPO:0001985","FYPO:0001320","FYPO:0006551"],"is_obsolete":false,"name":"abolished transcription during vegetative growth","synonyms":[{"name":"abolished transcription during mitotic cell cycle","type":"related"},{"name":"transcription abolished during vegetative growth","type":"exact"}],"termid":"FYPO:0001443"}


id: PBO:0116747
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNF2 related chromatin remodeling annealing helicase 1","termid":"PBO:0116747"}


id: PBO:0113753
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces specific protein, predicted plasma membrane receptor (Pfam-N)","termid":"PBO:0113753"}


id: PBO:0049663
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H4 histone pseudogene 1","termid":"PBO:0049663"}


id: PBO:0005282
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sim4 and Mal2 associated (4 and 2 associated) protein 4","termid":"PBO:0005282"}


id: PBO:0011961
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase allele types","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unknown","termid":"PBO:0011961"}


id: PBO:0038648
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acyl-CoA oxidase 3, pristanoyl","termid":"PBO:0038648"}


id: PBO:0066334
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RCC1 and BTB domain containing protein 2 pseudogene 1","termid":"PBO:0066334"}


id: PBO:0071156
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L22 pseudogene 21","termid":"PBO:0071156"}


id: PBO:0113143
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase-activating protein for yeast Rab family members; Ypt1p is the preferred in vitro substrate but also acts on Sec4p, Ypt31p and Ypt32p; involved in the regulation of ER to Golgi vesicle transport; localizes to the ER and peroxisomes","termid":"PBO:0113143"}


id: PBO:0058610
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6742","termid":"PBO:0058610"}


id: PBO:0074775
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 3H","termid":"PBO:0074775"}


id: SO:0001911
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant where copies of a feature are increased relative to the reference.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"copy_number_change","termid":"SO:0001563"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"copy_number_increase","synonyms":[{"name":"copy number increase","type":"exact"}],"termid":"SO:0001911"}


id: GO:0099546
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any protein degradation process, occurring at a presynapse, that regulates synaptic transmission.","definition_xrefs":["GOC:dos","PMID:23083742"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein catabolic process at synapse","termid":"GO:0140246"},{"relation_name":"regulates","term_name":"chemical synaptic transmission","termid":"GO:0007268"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0030163"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0030163","GO:0023052"],"is_obsolete":false,"name":"protein catabolic process, modulating synaptic transmission","termid":"GO:0099546"}


id: GO:0020020
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Vacuole within a parasite used for digestion of the host cell cytoplasm. An example of this component is found in the Apicomplexa.","definition_xrefs":["GOC:mb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phagolysosome","termid":"GO:0032010"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005773"},{"rel_name":"is_a","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005773","GO:0005737","GO:0031410"],"is_obsolete":false,"name":"food vacuole","secondary_identifiers":["GO:0005772"],"synonyms":[{"name":"digestive vacuole","type":"exact"}],"termid":"GO:0020020"}


id: FYPO:0007454
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of ATP binding by a gene product (usually a protein) in a mutant is decreased. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal ATP binding","termid":"FYPO:0003671"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000652","FYPO:0001985"],"is_obsolete":false,"name":"decreased ATP binding","synonyms":[{"name":"reduced ATP binding","type":"exact"}],"termid":"FYPO:0007454"}


id: BFO:0000055
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"realizes","termid":"BFO:0000055"}


id: PBO:0112836
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endomembrane system protein, FAR-17a/AIG1-like family protein, Aig1","termid":"PBO:0112836"}


id: PBO:0085358
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phosphopantetheinyl transferase involved in lysine biosynthesis; converts inactive apo-form of Lys2p (alpha-aminoadipate reductase) into catalytically active holo-form by posttranslational addition of phosphopantetheine","termid":"PBO:0085358"}


id: GO:2000345
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of hepatocyte proliferation.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of epithelial cell proliferation","termid":"GO:0050678"},{"relation_name":"regulates","term_name":"hepatocyte proliferation","termid":"GO:0072574"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of hepatocyte proliferation","termid":"GO:2000345"}


id: PBO:0068554
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U2 small nuclear 5, pseudogene","termid":"PBO:0068554"}


id: MONDO:0044221
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete blood group--lutheran inhibitor (obsolete MONDO:0044221)","secondary_identifiers":["OMIM:111150"],"synonyms":[{"name":"INLU","type":"related"},{"name":"blood group--Lutheran INHIBITOR","type":"related"},{"name":"dominant 50U (A-B-) phenotype","type":"related"}],"termid":"MONDO:0044221","xrefs":{"Monarch":{"xref_id":"0044221"}}}


id: PBO:0041159
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"basic transcription factor 3 pseudogene 14","termid":"PBO:0041159"}


id: PBO:0075944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STAG2 antisense RNA 1","termid":"PBO:0075944"}


id: FYPO:0006684
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which an interaction between a protein and RNAs transcribed from the centromeric region is decreased. One of the relevant gene products may be encoded by the mutated gene, or both the RNA and protein may be encoded by genes other than the mutated one.","definition_xrefs":["PomBase:mah","PMID:19111658"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein-RNA interaction","termid":"FYPO:0002134"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002131"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0002131","FYPO:0001985","FYPO:0000707","FYPO:0000652"],"is_obsolete":false,"name":"decreased centromeric transcript binding","synonyms":[{"name":"decreased cen transcript binding","type":"exact"},{"name":"decreased centromeric RNA binding","type":"exact"},{"name":"decreased protein-centromeric transcript interaction","type":"exact"},{"name":"reduced centromeric transcript binding","type":"exact"}],"termid":"FYPO:0006684"}


id: PBO:0050343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 45","termid":"PBO:0050343"}


id: PBO:0068238
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 18S pre-ribosomal N4","termid":"PBO:0068238"}


id: PBO:0081050
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger CCHC-type containing 8","termid":"PBO:0081050"}


id: PBO:0073620
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sialic acid binding Ig like lectin 6","termid":"PBO:0073620"}


id: MONDO:0700035
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A chromosomal disorder consisting of the absence of one chromosome 8.","definition_xrefs":["MONDO:patterns/monosomy"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monosomy","termid":"MONDO:0020639"},{"relation_name":"is_a","term_name":"chromosome 8 disorder","termid":"MONDO:0700015"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"monosomy chromosome 8","secondary_identifiers":["MESH:C537823","NCIT:C36535"],"synonyms":[{"name":"chromosome 8 deletion","type":"exact"},{"name":"loss of chromosome 8","type":"related"}],"termid":"MONDO:0700035","xrefs":{"Monarch":{"xref_id":"0700035"}}}


id: PBO:0024868
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pediatric medulloblastoma","termid":"PBO:0024868"}


id: MONDO:0013153
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any inflammatory bowel disease in which the cause of the disease is a mutation in the IL10RA gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"IL10-related early-onset inflammatory bowel disease","termid":"MONDO:0016542"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0004335"],"is_obsolete":false,"name":"inflammatory bowel disease 28","secondary_identifiers":["MESH:C567728","NCIT:C164676","MEDGEN:442630","DOID:0110899","UMLS:C2751053","GARD:18343","NANDO:2200447","OMIM:613148"],"synonyms":[{"name":"IBD28","type":"exact"},{"name":"IL10RA inflammatory bowel disease","type":"exact"},{"name":"early onset autosomal recessive inflammatory bowel disease 28","type":"exact"},{"name":"inflammatory bowel disease 28","type":"exact"},{"name":"inflammatory bowel disease 28, autosomal recessive","type":"exact"},{"name":"inflammatory bowel disease 28, early onset, autosomal recessive","type":"exact"},{"name":"inflammatory bowel disease caused by mutation in IL10RA","type":"exact"},{"name":"inflammatory bowel disease type 28","type":"exact"},{"name":"inflammatory bowel disease, early-onset, autosomal recessive","type":"exact"}],"termid":"MONDO:0013153","xrefs":{"Monarch":{"xref_id":"0013153"}}}


id: MONDO:0005056
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Squamous cell carcinomas with morphologically prominent production of keratin.","definition_xrefs":["NCIT:C4105"],"direct_ancestors":[{"relation_name":"is_a","term_name":"squamous cell carcinoma","termid":"MONDO:0005096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"keratinizing squamous cell carcinoma","secondary_identifiers":["EFO:0000559","DOID:5521","ICDO:8071/3","MEDGEN:137730","UMLS:C0334247"],"synonyms":[{"name":"keratinizing epidermoid carcinoma","type":"exact"},{"name":"keratinizing squamous cell carcinoma","type":"exact"},{"name":"squamous cell carcinoma, keratinizing","type":"exact"},{"name":"squamous cell carcinoma, keratinizing (morphologic abnormality)","type":"exact"}],"termid":"MONDO:0005056","xrefs":{"Monarch":{"xref_id":"0005056"}}}


id: MONDO:0012423
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"MORM syndrome is characterized by the association of intellectual deficit, truncal obesity, retinal dystrophy and micropenis. It has been described in 14 individuals from a consanguineous family. It is transmitted in an autosomal recessive manner. The causative locus has been mapped to chromosome region 9q34.","definition_xrefs":["Orphanet:75858"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"inherited retinal dystrophy","termid":"MONDO:0019118"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MORM syndrome","secondary_identifiers":["MESH:C536984","icd11.foundation:1027545274","GARD:10121","SCTID:715628009","MEDGEN:341851","OMIM:610156","UMLS:C1857802"],"synonyms":[{"name":"MORM syndrome","type":"exact"},{"name":"MORMS","type":"related"},{"name":"intellectual disability, truncal obesity, retinal dystrophy and micropenis","type":"related"},{"name":"intellectual disability, truncal obesity, retinal dystrophy, and micropenis syndrome","type":"related"},{"name":"intellectual disability-truncal obesity-retinal dystrophy-micropenis syndrome","type":"exact"},{"name":"mental retardation, truncal obesity, retinal dystrophy and micropenis","type":"related"},{"name":"mental retardation, truncal obesity, retinal dystrophy, and micropenis","type":"exact"},{"name":"mental retardation, truncal obesity, retinal dystrophy, and micropenis syndrome","type":"related"},{"name":"mental retardation-truncal obesity-retinal dystrophy-micropenis syndrome","type":"exact"}],"termid":"MONDO:0012423","xrefs":{"Monarch":{"xref_id":"0012423"}}}


id: SO:0000293
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A repetitive element that is engineered and foreign.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"engineered","termid":"SO:0000783"},{"relation_name":"has_quality","term_name":"foreign","termid":"SO:0000784"},{"relation_name":"is_a","term_name":"repeat_region","termid":"SO:0000657"},{"relation_name":"is_a","term_name":"engineered_foreign_region","termid":"SO:0000805"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"engineered_foreign_repetitive_element","synonyms":[{"name":"engineered foreign repetitive element","type":"exact"}],"termid":"SO:0000293"}


id: MONDO:0023171
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Foix-Chavany-Marie syndrome (FCMS) is a cortico-subcortical suprabulbar or pseudobulbar palsy of the lower cranial nerves, characterized by severe dysarthria and dysphagia associated with bilateral central facio-pharyngo-glosso-masticatory paralysis, with prominent automatic-voluntary dissociation in which involuntary movements of the affected muscles are preserved.","definition_xrefs":["Orphanet:2048"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multiple cranial nerve palsy","termid":"MONDO:0001819"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"foix chavany Marie syndrome","secondary_identifiers":["GARD:2351","UMLS:C2931412","MEDGEN:419406","MESH:C537069","SCTID:720956003"],"synonyms":[{"name":"anterior opercular syndrome","type":"related"},{"name":"bilateral anterior opercular syndrome","type":"related"},{"name":"congenital Foix-Chavany-Marie syndrome","type":"related"},{"name":"congenital Foix-Chavany-Marie syndrome (subtype)","type":"related"},{"name":"facio-Labio-pharyngo-Glosso-laryngo-brachial paralysis","type":"related"},{"name":"facio-pharyngo-glossal diplegia with automatic-voluntary movement dissociation","type":"related"},{"name":"facio-pharyngo-glosso-masticatory diplegia","type":"related"},{"name":"foix chavany Marie syndrome","type":"exact"},{"name":"opercular syndrome, anterior","type":"related"},{"name":"pseudobulbar paralysis, cortical type","type":"related"}],"termid":"MONDO:0023171","xrefs":{"Monarch":{"xref_id":"0023171"}}}


id: PBO:0042336
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD68 molecule","termid":"PBO:0042336"}


id: PBO:0065260
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich 23 domain containing 1","termid":"PBO:0065260"}


id: MONDO:0020748
data:
  {"annotated_genes":["SJAG_04277"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87187],"is_not":false,"summary":null,"term":"MONDO:0020748"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"sitosterolemia","termid":"MONDO:0008863"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04277":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002525"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0002525"],"is_obsolete":false,"name":"sitosterolemia 2","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:618666","UMLS:C5231453","GARD:16372","MEDGEN:1684715","DOID:0060983"],"synonyms":[{"name":"STSL2","type":"exact"}],"termid":"MONDO:0020748","terms_by_termid":{"MONDO:0020748":null},"xrefs":{"Monarch":{"xref_id":"0020748"}}}


id: PBO:0065511
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline-serine-threonine phosphatase interacting protein 1","termid":"PBO:0065511"}


id: PBO:0005051
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.3.1.20","termid":"PBO:0005051"}


id: GO:0032020
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The covalent addition to a protein of ISG15, a ubiquitin-like protein.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification by small protein conjugation","termid":"GO:0032446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0070647"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0070647","GO:0008150"],"is_obsolete":false,"name":"ISG15-protein conjugation","termid":"GO:0032020"}


id: PBO:0027849
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_mitotic_cell_cycle_regulation_during_cellular_response_to_UV","termid":"PBO:0027849"}


id: PATO:0000521
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000521 drug sensitivity value (obsolete PATO:0000521)","termid":"PATO:0000521"}


id: MONDO:0017623
data:
  {"annotated_genes":["SJAG_04394","SJAG_04206","SJAG_02426"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86793,86794,86795],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008318"}]},"cv_name":"mondo","definition":"A group of clinically heterogeneous disorders united by a germline PTEN mutation and the involvement of derivatives of all 3 germ cell layers, manifesting with hamartomas, overgrowth and neoplasia. Currently, subsets carrying clinical diagnoses of Cowden syndrome, Bannayan-Riley-Ruvalcaba syndrome, Proteus and Proteus-like syndromes and SOLAMEN syndrome belong to PHTS.","definition_xrefs":["Orphanet:306498"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete rare skin tumor or hamartoma (obsolete MONDO:0019300)","termid":"MONDO:0019300"},{"relation_name":"is_a","term_name":"developmental defect during embryogenesis","termid":"MONDO:0019755"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02426":null,"SJAG_04206":null,"SJAG_04394":null},"genotype_count":0,"is_obsolete":false,"name":"PTEN hamartoma tumor syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["SCTID:722859001","UMLS:C1959582","DOID:0080191","GARD:12800","MEDGEN:368366","NORD:1631","NCIT:C179915"],"synonyms":[{"name":"PHTS","type":"exact"},{"name":"PTEN hamartoma tumor syndrome","type":"exact"}],"termid":"MONDO:0017623","terms_by_termid":{"MONDO:0008318":null},"xrefs":{"Monarch":{"xref_id":"0017623"}}}


id: PBO:0031343
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_hydrogen_peroxide","termid":"PBO:0031343"}


id: GO:1900407
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cellular response to oxidative stress.","definition_xrefs":["GOC:mah","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular response to stress","termid":"GO:0080135"},{"relation_name":"is_a","term_name":"regulation of response to oxidative stress","termid":"GO:1902882"},{"relation_name":"regulates","term_name":"cellular response to oxidative stress","termid":"GO:0034599"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cellular response to oxidative stress","synonyms":[{"name":"regulation of adaptive response to oxidative stress","type":"narrow"}],"termid":"GO:1900407"}


id: PR:Q10216
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An uncharacterized oxidoreductase YghA that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01591"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized oxidoreductase C4H3.08 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4H3.08","secondary_identifiers":["UniProtKB:Q10216"],"synonyms":[{"name":"Spom972h-yghA","type":"exact"}],"termid":"PR:Q10216"}


id: PBO:0042761
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centrosomal protein 44","termid":"PBO:0042761"}


id: GO:0003799
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Inhibits the growth of, or directly kills, fungal cells.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete antifungal peptide activity (obsolete GO:0003799)","synonyms":[{"name":"antifungal peptide activity","type":"exact"}],"termid":"GO:0003799"}


id: PR:Q10085
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC11D3.06 gene.","definition_xrefs":["UniProtKB:Q10085","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized transporter C11D3.06 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC11D3.06","synonyms":[{"name":"Spom972h-SPAC11D3.06","type":"exact"}],"termid":"PR:Q10085"}


id: PBO:0067255
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 329, pseudogene","termid":"PBO:0067255"}


id: MONDO:0016234
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Rare arteriovenous malformation.","gene_count":0,"genotype_count":0,"name":"obsolete rare arteriovenous malformation (obsolete MONDO:0016234)","secondary_identifiers":["MedDRA:10003193","MESH:D001165","Orphanet:211266"],"synonyms":[{"name":"rare arteriovenous hemangioma/malformation","type":"exact"},{"name":"rare arteriovenous malformation","type":"exact"}],"termid":"MONDO:0016234","xrefs":{"Monarch":{"xref_id":"0016234"}}}


id: PBO:0090227
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial threonine-tRNA ligase","termid":"PBO:0090227"}


id: PBO:0049582
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H3.7 histone (putative)","termid":"PBO:0049582"}


id: MONDO:0957530
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"breast-ovarian cancer, familial, susceptibility to","termid":"MONDO:0100526"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"breast-ovarian cancer, familial, susceptibility to, 5","secondary_identifiers":["MEDGEN:1841251","OMIM:620442","UMLS:C5830615"],"termid":"MONDO:0957530","xrefs":{"Monarch":{"xref_id":"0957530"}}}


id: PBO:0018139
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mis6-Sim4 complex subunit Fta4","termid":"PBO:0018139"}


id: PBO:0078131
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha variable 12-2","termid":"PBO:0078131"}


id: PBO:0079321
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis-specific transcript, Y-linked 11","termid":"PBO:0079321"}


id: PBO:0042781
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centrosomal protein 112","termid":"PBO:0042781"}


id: MONDO:0021684
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete infectious disease of central nervous system (obsolete MONDO:0021684)","termid":"MONDO:0021684","xrefs":{"Monarch":{"xref_id":"0021684"}}}


id: MONDO:0008802
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"antithrombin, familial hemorrhagic diathesis due to","secondary_identifiers":["MESH:C565947","OMIM:207300","MEDGEN:347227","UMLS:C1859761"],"synonyms":[{"name":"antithrombin, familial hemorrhagic diathesis due to","type":"exact"}],"termid":"MONDO:0008802","xrefs":{"Monarch":{"xref_id":"0008802"}}}


id: PBO:0088693
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exoribonuclease Rex4","termid":"PBO:0088693"}


id: MONDO:0002272
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A laboratory test result indicating abnormally high proliferation of gamma globulins in the blood originating from multiple cell lines.","definition_xrefs":["NCIT:C35885"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma protein metabolism disease","termid":"MONDO:0002273"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"polyclonal hypergammaglobulinemia","secondary_identifiers":["ICD10CM:D89.0","ICD9:273.0","UMLS:C0154254","MEDGEN:56337","SCTID:190808009","DOID:2344"],"synonyms":[{"name":"polyclonal hypergammaglobulinemia","type":"exact"}],"termid":"MONDO:0002272","xrefs":{"Monarch":{"xref_id":"0002272"}}}


id: GO:0097285
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any apoptotic process in a specific cell type.","definition_xrefs":["GOC:mtg_apoptosis"],"gene_count":0,"genotype_count":0,"name":"obsolete cell-type specific apoptotic process (obsolete GO:0097285)","synonyms":[{"name":"cell-type specific apoptosis","type":"narrow"}],"termid":"GO:0097285"}


id: PBO:0005456
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sir2 family histone deacetylase Hst2","termid":"PBO:0005456"}


id: PBO:0057147
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 224","termid":"PBO:0057147"}


id: GO:2000918
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of glucuronoarabinoxylan catabolic process.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of glucuronoxylan catabolic process","termid":"GO:2000915"},{"relation_name":"is_a","term_name":"regulation of arabinoxylan-containing compound catabolic process","termid":"GO:2000921"},{"relation_name":"regulates","term_name":"glucuronoarabinoxylan catabolic process","termid":"GO:2000887"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"regulation of glucuronoarabinoxylan catabolic process","synonyms":[{"name":"regulation of glucuronoarabinoxylan catabolism","type":"exact"}],"termid":"GO:2000918"}


id: PBO:0065030
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRDX5 pseudogene 1","termid":"PBO:0065030"}


id: MONDO:0023178
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"fragile X syndrome","termid":"MONDO:0010383"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile X syndrome type 1","termid":"MONDO:0023178","xrefs":{"Monarch":{"xref_id":"0023178"}}}


id: PBO:0069343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 603, pseudogene","termid":"PBO:0069343"}


id: GO:0070260
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of 5'-phosphotyrosyl groups formed as covalent intermediates (in DNA backbone breakage) between DNA topoisomerase II and DNA.","definition_xrefs":["PMID:16751265"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tyrosyl-DNA phosphodiesterase activity","termid":"GO:0070259"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016787","GO:0016788","GO:0140097","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"5'-tyrosyl-DNA phosphodiesterase activity","termid":"GO:0070260"}


id: PBO:0042931
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cingulin like 1","termid":"PBO:0042931"}


id: PBO:0046986
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 86 member K, pseudogene","termid":"PBO:0046986"}


id: MONDO:0023286
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"pulmonary fibrosis","termid":"MONDO:0002771"},{"relation_name":"is_a","term_name":"pneumoconiosis","termid":"MONDO:0015926"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"graphite pneumoconiosis","secondary_identifiers":["MEDGEN:120502","ICD9:503","SCTID:17385007","GARD:8359","UMLS:C0264439"],"synonyms":[{"name":"carbon pneumoconiosis","type":"related"},{"name":"graphite fibrosis","type":"related"},{"name":"graphite fibrosis of lung","type":"exact"},{"name":"graphite lung disease","type":"related"},{"name":"graphite pneumoconiosis","type":"exact"},{"name":"graphitosis","type":"related"}],"termid":"MONDO:0023286","xrefs":{"Monarch":{"xref_id":"0023286"}}}


id: PBO:0063214
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PCCA divergent transcript","termid":"PBO:0063214"}


id: MONDO:0011931
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"ovarian cancer","termid":"MONDO:0008170"},{"relation_name":"is_a","term_name":"hereditary neoplastic syndrome","termid":"MONDO:0015356"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ovarian cancer, susceptibility to, 1","secondary_identifiers":["OMIM:607893","MEDGEN:390836","UMLS:C2675601"],"synonyms":[{"name":"OVCAS1","type":"exact"},{"name":"ovarian cancer, susceptibility to","type":"exact"},{"name":"ovarian cancer, susceptibility to, 1","type":"exact"}],"termid":"MONDO:0011931","xrefs":{"Monarch":{"xref_id":"0011931"}}}


id: GO:0090574
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex, located in the nucleus, that possesses activity that prevents or downregulates transcription from a RNA polymerase V promoter.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription repressor complex","termid":"GO:0017053"},{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005634","GO:0032991"],"is_obsolete":false,"name":"RNA polymerase V transcription repressor complex","termid":"GO:0090574"}


id: PBO:0066130
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RASSF8 antisense RNA 1","termid":"PBO:0066130"}


id: FYPO:0005439
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of DNA/DNA annealing activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased catalytic activity","termid":"FYPO:0000663"},{"relation_name":"is_a","term_name":"abnormal DNA/DNA annealing activity","termid":"FYPO:0005438"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000653"}],"interesting_parent_ids":["FYPO:0000653","FYPO:0000654","FYPO:0000652","FYPO:0000707","FYPO:0001985","FYPO:0000661"],"is_obsolete":false,"name":"decreased DNA/DNA annealing activity","synonyms":[{"name":"reduced DNA/DNA annealing activity","type":"exact"}],"termid":"FYPO:0005439"}


id: MONDO:0957048
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"macular degeneration","termid":"MONDO:0003004"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"isolated macular dystrophy","secondary_identifiers":["UMLS:C5681367","GARD:22097","Orphanet:519302","MEDGEN:1842262"],"termid":"MONDO:0957048","xrefs":{"Monarch":{"xref_id":"0957048"}}}


id: GO:0009691
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of cytokinins, a class of adenine-derived compounds that can function in plants as growth regulators.","definition_xrefs":["ISBN:0387969845"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokinin metabolic process","termid":"GO:0009690"},{"relation_name":"is_a","term_name":"hormone biosynthetic process","termid":"GO:0042446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cytokinin biosynthetic process","synonyms":[{"name":"cytokinin anabolism","type":"exact"},{"name":"cytokinin biosynthesis","type":"exact"},{"name":"cytokinin formation","type":"exact"},{"name":"cytokinin synthesis","type":"exact"}],"termid":"GO:0009691"}


id: PBO:0015686
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hikeshi protein, Opi10 (predicted)","termid":"PBO:0015686"}


id: PBO:0057785
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3065","termid":"PBO:0057785"}


id: GO:0102969
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (6E)-8-oxogeraniol + NADP = (6E)-8-oxogeranial + NADPH + H+.","definition_xrefs":["GOC:pz","RHEA:32615"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"10-oxogeraniol oxidoreductase activity","secondary_identifiers":["MetaCyc:RXN-9370"],"termid":"GO:0102969"}


id: PBO:0072870
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SATB homeobox 1","termid":"PBO:0072870"}


id: PATO:0001142
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001142 ig d concentration value (obsolete PATO:0001142)","termid":"PATO:0001142"}


id: SO:0000313
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A double-helical region of nucleic acid formed by base-pairing between adjacent (inverted) complementary sequences.","direct_ancestors":[{"relation_name":"is_a","term_name":"RNA_sequence_secondary_structure","termid":"SO:0000122"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stem_loop","secondary_identifiers":["SO:0000019","http://en.wikipedia.org/wiki/Stem_loop"],"synonyms":[{"name":"INSDC_feature:stem_loop","type":"exact"},{"name":"RNA_hairpin_loop","type":"exact"},{"name":"stem loop","type":"exact"},{"name":"stem-loop","type":"exact"}],"termid":"SO:0000313"}


id: PBO:0071982
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S6 pseudogene 11","termid":"PBO:0071982"}


id: MONDO:1010813
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Polydactyly that occurs in horse.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polydactyly, non-human animal","termid":"MONDO:1010158"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polydactyly, horse","secondary_identifiers":["OMIA:000810-9796"],"termid":"MONDO:1010813","xrefs":{"Monarch":{"xref_id":"1010813"}}}


id: PBO:0111869
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PP2A","termid":"PBO:0111869"}


id: PBO:0077222
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane BAX inhibitor motif containing 6","termid":"PBO:0077222"}


id: GO:2001153
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of renal water transport.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of transport","termid":"GO:0051050"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"is_a","term_name":"regulation of renal water transport","termid":"GO:2001151"},{"relation_name":"positively_regulates","term_name":"renal water transport","termid":"GO:0003097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of renal water transport","termid":"GO:2001153"}


id: GO:0048223
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Network composed of hemicelluloses; members of a class of plant cell wall polysaccharide that cannot be extracted from the wall by hot water or chelating agents, but can be extracted by aqueous alkali. Includes xylan, glucuronoxylan, arabinoxylan, arabinogalactan II, glucomannan, xyloglucan and galactomannan.","definition_xrefs":["DOI:10.1016/j.foodchem.2008.11.065","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"primary cell wall","termid":"GO:0009530"},{"relation_name":"part_of","term_name":"secondary cell wall","termid":"GO:0009531"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005618"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005618"],"is_obsolete":false,"name":"hemicellulose network","termid":"GO:0048223"}


id: PBO:0047810
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FOXL3 overlapping transcript 1","termid":"PBO:0047810"}


id: MOD:00235
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to S-nitrosyl-L-cysteine.","definition_xrefs":["PubMed:10442087","PubMed:11562475","PubMed:15688001","RESID:AA0230","Unimod:275","PubMed:8626764","PubMed:8637569"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"S-nitrosyl-L-cysteine","synonyms":[{"name":"(2R)-2-amino-3-nitrososulfanyl-propanoic acid","type":"exact"},{"name":"L-cysteine nitrite ester","type":"exact"},{"name":"MOD_RES S-nitrosocysteine","type":"exact"},{"name":"Nitrosyl","type":"related"},{"name":"S-nitrosocysteine","type":"exact"},{"name":"S-nitrosyl-L-cysteine","type":"exact"},{"name":"S-nitrosylation","type":"related"},{"name":"SNOCys","type":"exact"}],"termid":"MOD:00235"}


id: MONDO:0022824
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital craniosynostosis maternal hyperthyroiditis","termid":"MONDO:0022824","xrefs":{"Monarch":{"xref_id":"0022824"}}}


id: PBO:0044695
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"D-dopachrome tautomerase pseudogene 1","termid":"PBO:0044695"}


id: GO:0001854
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a C3d product of the complement cascade.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"complement binding","termid":"GO:0001848"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"complement component C3d binding","termid":"GO:0001854"}


id: PATO:0002092
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A morphology quality inhering in a neoplastic cell by virtue of the bearer's exhibiting breakdown of cell-cell interaction maintaining tissue architecture, proliferative dysregulation and bizarre modification to nucleus size and shape.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"morphology","termid":"PATO:0000051"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anaplastic","termid":"PATO:0002092"}


id: PBO:0077128
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulointerstitial nephritis antigen like 1","termid":"PBO:0077128"}


id: MONDO:1011032
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital insensitivity to pain (CIP) in dogs due to a variation in the SCN9A gene.","definition_xrefs":["PMID:36630088"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"},{"relation_name":"is_a","term_name":"nervous system disorder, non-human animal","termid":"MONDO:1011336"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hereditary sensory and autonomic neuropathy, SCN9A-related, dog","secondary_identifiers":["OMIA:002616-9615"],"termid":"MONDO:1011032","xrefs":{"Monarch":{"xref_id":"1011032"}}}


id: PBO:0028423
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-RNA_absent_from_cell_during_meiosis","termid":"PBO:0028423"}


id: CHEBI:29103
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium(1+)","termid":"CHEBI:29103"}


