# terms

id: GO:0008784
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-alanine = D-alanine.","definition_xrefs":["RHEA:20249","EC:5.1.1.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino-acid racemase activity","termid":"GO:0047661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0003824","GO:0016853","GO:0003674"],"is_obsolete":false,"name":"alanine racemase activity","secondary_identifiers":["KEGG_REACTION:R00401","MetaCyc:ALARACECAT-RXN"],"synonyms":[{"name":"L-alanine racemase activity","type":"related"}],"termid":"GO:0008784"}


id: MONDO:0859316
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iron overload, susceptibility to","secondary_identifiers":["UMLS:C5703292","OMIM:620121","MEDGEN:1814970"],"termid":"MONDO:0859316","xrefs":{"Monarch":{"xref_id":"0859316"}}}


id: GO:0018274
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of peptidyl-lysine and peptidyl-serine to form a (2Xi,9S)-L-lysinoalanine cross-link.","definition_xrefs":["RESID:AA0123"],"gene_count":0,"genotype_count":0,"name":"obsolete peptide cross-linking via L-lysinoalanine (obsolete GO:0018274)","termid":"GO:0018274"}


id: GO:1905123
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of glucosylceramidase activity.","definition_xrefs":["GOC:bf","GOC:TermGenie","GO_REF:0000059","GOC:PARL","PMID:24334770"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of hydrolase activity","termid":"GO:0051336"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of glucosylceramidase activity","synonyms":[{"name":"regulation of D-glucosyl-N-acylsphingosine glucohydrolase activity","type":"exact"},{"name":"regulation of GCase activity","type":"exact"},{"name":"regulation of GlcCer-beta-glucosidase activity","type":"exact"},{"name":"regulation of acid beta-glucosidase activity","type":"exact"},{"name":"regulation of beta-D-glucocerebrosidase activity","type":"exact"},{"name":"regulation of beta-glucocerebrosidase activity","type":"exact"},{"name":"regulation of beta-glucosylceramidase activity","type":"exact"},{"name":"regulation of ceramide glucosidase activity","type":"exact"},{"name":"regulation of glucocerebrosidase activity","type":"exact"},{"name":"regulation of glucosphingosine glucosylhydrolase activity","type":"exact"},{"name":"regulation of glucosylcerebrosidase activity","type":"exact"},{"name":"regulation of glucosylsphingosine beta-D-glucosidase activity","type":"exact"},{"name":"regulation of glucosylsphingosine beta-glucosidase activity","type":"exact"},{"name":"regulation of psychosine hydrolase activity","type":"exact"}],"termid":"GO:1905123"}


id: MONDO:0006401
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare, aggressive carcinoma that arises from the salivary glands. It is characterized by the presence of a squamous and a glandular epithelial component.","definition_xrefs":["NCIT:C35737"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenosquamous carcinoma","termid":"MONDO:0006074"},{"relation_name":"is_a","term_name":"salivary gland squamous cell carcinoma","termid":"MONDO:0044740"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992"],"is_obsolete":false,"name":"salivary gland adenosquamous carcinoma","secondary_identifiers":["MEDGEN:277627","UMLS:C1335894"],"synonyms":[{"name":"saliva-secreting gland adenosquamous carcinoma","type":"exact"},{"name":"salivary gland adenosquamous carcinoma","type":"exact"}],"termid":"MONDO:0006401","xrefs":{"Monarch":{"xref_id":"0006401"}}}


id: GO:0052904
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: H2O + N(1)-acetylspermidine + O2 = 3-acetamidopropanal + H2O2 + putrescine.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete N1-acetylspermidine:oxygen oxidoreductase (3-acetamidopropanal-forming) activity (obsolete GO:0052904)","secondary_identifiers":["Reactome:R-HSA-141348","Reactome:R-HSA-141351"],"termid":"GO:0052904"}


id: MONDO:0002953
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A variant of basal cell carcinoma presenting as a pale, indurated plaque, usually in the upper trunk or face. Morphologically, it is characterized by the presence of strands, cords, and columns of basaloid cells infiltrating the dermis. Perineural invasion may be present and the basaloid cell infiltrate may extend into deeper tissues.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"skin basal cell carcinoma","termid":"MONDO:0005341"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0005093"],"is_obsolete":false,"name":"skin infiltrative basal cell carcinoma","secondary_identifiers":["ICDO:8092/3","NCIT:C27539","MEDGEN:87201","UMLS:C0334257","DOID:4299"],"synonyms":[{"name":"infiltrating basal cell carcinoma","type":"exact"},{"name":"infiltrative basal cell carcinoma","type":"related"},{"name":"skin infiltrating basal cell carcinoma","type":"exact"}],"termid":"MONDO:0002953","xrefs":{"Monarch":{"xref_id":"0002953"}}}


id: MONDO:0858916
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A pituitary cancer that is characterized by features of Cushing disease, with elevated blood ACTH levels and hypercortisolism arising within the fetal anterior pituitary and associated with DICER1 mutations.","definition_xrefs":["DOID:0081244"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pituitary cancer","termid":"MONDO:0002109"},{"relation_name":"is_a","term_name":"blastoma","termid":"MONDO:0005565"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"pituitary blastoma","secondary_identifiers":["NCIT:C155304","UMLS:C4743978","MEDGEN:1656462"],"termid":"MONDO:0858916","xrefs":{"Monarch":{"xref_id":"0858916"}}}


id: PBO:0061499
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuropilin 1","termid":"PBO:0061499"}


id: GO:0022627
data:
  {"annotated_genes":["SJAG_04204","SJAG_02749","SJAG_02522","SJAG_01548","SJAG_02894","SJAG_03424","SJAG_04476","SJAG_00503","SJAG_04342","SJAG_01296","SJAG_02340","SJAG_01512","SJAG_00733","SJAG_01287","SJAG_02253","SJAG_02020","SJAG_02803","SJAG_04663","SJAG_01387","SJAG_04746","SJAG_00523","SJAG_02046","SJAG_02335","SJAG_02479","SJAG_03034","SJAG_04174","SJAG_03262","SJAG_02861","SJAG_02585","SJAG_01132","SJAG_00465","SJAG_04256","SJAG_04475","SJAG_00069","SJAG_02682","SJAG_03859","SJAG_02280","SJAG_04672","SJAG_01609","SJAG_01226","SJAG_04324","SJAG_04998","SJAG_04188","SJAG_00544","SJAG_00468","SJAG_02477","SJAG_04029","SJAG_04168","SJAG_03762","SJAG_03568","SJAG_03422","SJAG_02224","SJAG_01366","SJAG_02904","SJAG_03254","SJAG_02184","SJAG_01632","SJAG_02870","SJAG_04814","SJAG_04695"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[58957,69241,70187,70357,70764,71281,71467,71529,71547,72290,73143,73598,73627,73766,74003,74007,74084,74193,74388,74692,74786,74851,74853,75067,75076,75477,75556,75560,76239,76255,76915,76992,77420,77561,77969,78702,78785,78971,79428,80217,80563,80577,91923,95083,100112,100113,100367,101871,101872,105725,105726,105751,105752,107032,113757,113758,114525,114526,116622,116623],"is_not":false,"summary":null,"term":"GO:0022627"}]},"cv_name":"cellular_component","definition":"The small subunit of a ribosome located in the cytosol.","definition_xrefs":["GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"small ribosomal subunit","termid":"GO:0015935"},{"relation_name":"part_of","term_name":"cytosolic ribosome","termid":"GO:0022626"}],"gene_count":60,"genes_by_uniquename":{"SJAG_00069":null,"SJAG_00465":null,"SJAG_00468":null,"SJAG_00503":null,"SJAG_00523":null,"SJAG_00544":null,"SJAG_00733":null,"SJAG_01132":null,"SJAG_01226":null,"SJAG_01287":null,"SJAG_01296":null,"SJAG_01366":null,"SJAG_01387":null,"SJAG_01512":null,"SJAG_01548":null,"SJAG_01609":null,"SJAG_01632":null,"SJAG_02020":null,"SJAG_02046":null,"SJAG_02184":null,"SJAG_02224":null,"SJAG_02253":null,"SJAG_02280":null,"SJAG_02335":null,"SJAG_02340":null,"SJAG_02477":null,"SJAG_02479":null,"SJAG_02522":null,"SJAG_02585":null,"SJAG_02682":null,"SJAG_02749":null,"SJAG_02803":null,"SJAG_02861":null,"SJAG_02870":null,"SJAG_02894":null,"SJAG_02904":null,"SJAG_03034":null,"SJAG_03254":null,"SJAG_03262":null,"SJAG_03422":null,"SJAG_03424":null,"SJAG_03568":null,"SJAG_03762":null,"SJAG_03859":null,"SJAG_04029":null,"SJAG_04168":null,"SJAG_04174":null,"SJAG_04188":null,"SJAG_04204":null,"SJAG_04256":null,"SJAG_04324":null,"SJAG_04342":null,"SJAG_04475":null,"SJAG_04476":null,"SJAG_04663":null,"SJAG_04672":null,"SJAG_04695":null,"SJAG_04746":null,"SJAG_04814":null,"SJAG_04998":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005829"},{"rel_name":"part_of","termid":"GO:0022626"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005829","GO:0005737","GO:0005575","GO:0032991","GO:0022626"],"is_obsolete":false,"name":"cytosolic small ribosomal subunit","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0009283","GO:0030873","GO:0005843","GO:0030499"],"synonyms":[{"name":"30S ribosomal subunit","type":"narrow"},{"name":"40S ribosomal subunit","type":"narrow"},{"name":"eukaryotic ribosomal SSU","type":"narrow"},{"name":"prokaryotic small ribosomal subunit","type":"narrow"}],"termid":"GO:0022627","terms_by_termid":{"GO:0022627":null}}


id: GO:2000164
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of planar cell polarity pathway involved in outflow tract morphogenesis.","definition_xrefs":["GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of planar cell polarity pathway involved in outflow tract morphogenesis (obsolete GO:2000164)","termid":"GO:2000164"}


id: PBO:0065606
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein tyrosine phosphatase 4A1","termid":"PBO:0065606"}


id: GO:0016999
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms.","definition_xrefs":["GOC:cab2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic process","termid":"GO:0008152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antibiotic metabolic process","synonyms":[{"name":"antibiotic metabolism","type":"exact"}],"termid":"GO:0016999"}


id: GO:0102673
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a fatty aldehyde + H2O + NAD+ = a fatty acid + 2 H+ + NADH.","definition_xrefs":["RHEA:49832"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde dehydrogenase (NAD+) activity","termid":"GO:0004029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"fatty aldehyde dehydrogenase (NAD+) activity","secondary_identifiers":["MetaCyc:RXN-4142"],"synonyms":[{"name":"fatty aldehyde dehydrogenase activity","type":"exact"}],"termid":"GO:0102673"}


id: FYPO:0000466
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cellular process phenotype in which the occurrence of invasive growth is decreased.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete decreased invasive growth (obsolete FYPO:0000466)","synonyms":[{"name":"invasive growth: decreased","type":"related"},{"name":"reduced invasive growth","type":"exact"}],"termid":"FYPO:0000466"}


id: FYPO:0005821
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of NEDD8-specific protease activity (deneddylase activity) is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal peptidase activity","termid":"FYPO:0000666"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000652","FYPO:0001985","FYPO:0000661","FYPO:0000654"],"is_obsolete":false,"name":"abnormal NEDD8-specific protease activity","synonyms":[{"name":"abnormal deneddylase activity","type":"exact"}],"termid":"FYPO:0005821"}


id: PBO:0030150
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_diethyl_maleate","termid":"PBO:0030150"}


id: PBO:0076300
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spectrin repeat containing nuclear envelope family member 4","termid":"PBO:0076300"}


id: GO:0180006
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: RNA polymerase II large subunit CTD heptapeptide repeat--phospho-L-serine (consensus YSPTSPS)(position 2) + H2O = RNA polymerase II large subunit + phosphate.","definition_xrefs":["PMID:22622228"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II CTD heptapeptide repeat phosphatase activity","termid":"GO:0008420"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0004721"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0004721","GO:0003824","GO:0003674","GO:0016788","GO:0016787","GO:0140096"],"is_obsolete":false,"name":"RNA polymerase II CTD heptapeptide repeat S2 phosphatase activity","synonyms":[{"name":"RNA polymerase II C-terminal domain S2 phosphatase activity","type":"exact"}],"termid":"GO:0180006"}


id: MONDO:0021348
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplasm (disease) that involves the testis.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"testicular disorder","termid":"MONDO:0002329"},{"relation_name":"is_a","term_name":"male reproductive system neoplasm","termid":"MONDO:0024582"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neoplasm of testis","secondary_identifiers":["ONCOTREE:TESTIS","UMLS:C0039590","SCTID:126900000","MEDGEN:52675","ICD9:239.5","NCIT:C3404"],"synonyms":[{"name":"neoplasm of testis","type":"exact"},{"name":"neoplasm of the testis","type":"exact"},{"name":"testicular neoplasm","type":"exact"},{"name":"testicular tumor","type":"exact"},{"name":"testicular tumour","type":"exact"},{"name":"testis neoplasm","type":"exact"},{"name":"testis neoplasm (disease)","type":"exact"},{"name":"testis tumor","type":"exact"},{"name":"testis tumour","type":"exact"},{"name":"tumor of testis","type":"exact"},{"name":"tumor of the testis","type":"exact"},{"name":"tumour of testis","type":"exact"},{"name":"tumour of the testis","type":"exact"}],"termid":"MONDO:0021348","xrefs":{"Monarch":{"xref_id":"0021348"}}}


id: PBO:0067133
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 181, pseudogene","termid":"PBO:0067133"}


id: GO:0033827
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of an N-acetyl-D-glucosamine residue from UDP-N-acetyl-D-glucosamine to the 4-position of a mannose linked alpha-1,6 to the core mannose of high-mannose oligosaccharides produced by Dictyostelium discoideum.","definition_xrefs":["EC:2.4.1.197"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylglucosaminyltransferase activity","termid":"GO:0008375"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016757","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"high-mannose-oligosaccharide beta-1,4-N-acetylglucosaminyltransferase activity","secondary_identifiers":["MetaCyc:2.4.1.197-RXN"],"synonyms":[{"name":"UDP-GlcNAc:oligosaccharide beta-N-acetylglucosaminyltransferase activity","type":"related"},{"name":"UDP-N-acetyl-D-glucosamine:high-mannose-oligosaccharide beta-1,4-N-acetylglucosaminyltransferase activity","type":"related"},{"name":"acetylglucosamine-oligosaccharide acetylglucosaminyltransferase activity","type":"related"},{"name":"uridine diphosphoacetylglucosamine-oligosaccharide acetylglucosaminyltransferase activity","type":"related"}],"termid":"GO:0033827"}


id: MONDO:0011385
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any disease of a degenerative nature that affects the intervertebral disk.","definition_xrefs":["NCIT:C26983"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete bone deterioration disease (obsolete MONDO:0000834)","termid":"MONDO:0000834"},{"relation_name":"is_a","term_name":"vertebral column disorder","termid":"MONDO:0000812"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intervertebral disk degenerative disorder","secondary_identifiers":["MEDGEN:102357","DOID:90","OMIM:603932","EFO:0004994","ICD9:722.6","UMLS:C0158266","MESH:D055959","SCTID:77547008"],"synonyms":[{"name":"IDD","type":"exact"},{"name":"cervical disc degenerative disease","type":"narrow"},{"name":"cervical disk degenerative disease","type":"narrow"},{"name":"degenerative disc disease","type":"exact"},{"name":"degenerative disk disease","type":"exact"},{"name":"degenerative disorder of intervertebral disc","type":"exact"},{"name":"degenerative disorder of intervertebral disk","type":"exact"},{"name":"intervertebral Disc Degeneration","type":"exact"},{"name":"intervertebral Disc degenerative disease","type":"exact"},{"name":"intervertebral Disc degenerative disorder","type":"exact"},{"name":"intervertebral disc degeneration","type":"exact"},{"name":"intervertebral disc disease","type":"exact"},{"name":"intervertebral disk degeneration","type":"exact"},{"name":"intervertebral disk degenerative disorder","type":"exact"},{"name":"intervertebral disk disease","type":"exact"},{"name":"lumbar disc degeneration","type":"narrow"},{"name":"lumbar disk degeneration","type":"narrow"},{"name":"vertebral Disc degenerative disease","type":"exact"},{"name":"vertebral Disc degenerative disorder","type":"exact"},{"name":"vertebral disc disease","type":"exact"},{"name":"vertebral disk disease","type":"exact"}],"termid":"MONDO:0011385","xrefs":{"Monarch":{"xref_id":"0011385"}}}


id: PBO:0048694
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GLIS2 antisense RNA 1","termid":"PBO:0048694"}


id: GO:0044777
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A homotetrameric protein complex that is essential for DNA replication. It supercoils the single-stranded DNA preventing DNA duplexing before the polymerase holoenzyme passes and synthesizes the complementary strand. It is also involved in DNA recombination and repair.","definition_xrefs":["GOC:jl","UniProt:P0AGE0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"nucleoid","termid":"GO:0009295"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"single-stranded DNA-binding protein complex","synonyms":[{"name":"SSB complex","type":"exact"}],"termid":"GO:0044777"}


id: MONDO:1010891
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any neuronal ceroid lipofuscinosis that occurs in sheep due to a mutation in the PPT1 gene created using CRISPR/Cas9 gene editing.","definition_xrefs":["OMIA:001504-9940"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuronal ceroid lipofuscinosis, sheep","termid":"MONDO:1011578"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuronal ceroid lipofuscinosis, PPT1-related, sheep","synonyms":[{"name":"neuronal ceroid lipofuscinosis, 1, sheep","type":"related"}],"termid":"MONDO:1010891","xrefs":{"Monarch":{"xref_id":"1010891"}}}


id: MONDO:0006821
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A complication of kidney diseases characterized by cell death involving kidney papilla in the kidney medulla. Damages to this area may hinder the kidney to concentrate urine resulting in polyuria. Sloughed off necrotic tissue may block kidney pelvis or ureter. Necrosis of multiple renal papillae can lead to kidney failure.","definition_xrefs":["MESH:D007681"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kidney disorder","termid":"MONDO:0005240"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"kidney papillary necrosis","secondary_identifiers":["ICD9:583.7","MEDGEN:7212","UMLS:C0022667","DOID:2981","MedDRA:10028865","SCTID:90241004"],"synonyms":[{"name":"necrotizing renal papillitis","type":"exact"},{"name":"papillary necrosis","type":"exact"},{"name":"renal papillitis necrotizing","type":"exact"}],"termid":"MONDO:0006821","xrefs":{"Monarch":{"xref_id":"0006821"}}}


id: FYPO:0004075
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which cell growth is decreased. Cell growth is the irreversible increase in size over time by accretion and biosynthetic production of matter similar to that already present.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell growth","termid":"FYPO:0002862"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"decreased cell growth","synonyms":[{"name":"reduced cell growth","type":"exact"}],"termid":"FYPO:0004075"}


id: GO:2000618
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of histone H4-K16 acetylation.","definition_xrefs":["GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of histone H4-K16 acetylation (obsolete GO:2000618)","synonyms":[{"name":"regulation of histone H4 acetylation at K16","type":"exact"}],"termid":"GO:2000618"}


id: GO:0010761
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Cell migration that is accomplished by extension and retraction of a fibroblast pseudopodium. A fibroblast is a connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules.","definition_xrefs":["GOC:BHF","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ameboidal-type cell migration","termid":"GO:0001667"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"fibroblast migration","synonyms":[{"name":"fibroblast cell migration","type":"exact"}],"termid":"GO:0010761"}


id: GO:0035751
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the pH of the lysosomal lumen, measured by the concentration of the hydrogen ion.","definition_xrefs":["GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of intracellular pH","termid":"GO:0051453"},{"relation_name":"part_of","term_name":"lysosome organization","termid":"GO:0007040"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of lysosomal lumen pH","termid":"GO:0035751"}


id: MONDO:0008899
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Camptodactyly syndrome, Guadalajara type 2 is an extremely rare multiple congenital anomaly syndrome characterized by distinctive intrauterine growth retardation, skeletal dysplasia with multiple malformations including camptodactyly of all fingers, bilateral hallux valgus, short second, fourth and fifth toes, hypoplastic patella, microcephaly, low-set ears, short neck, cuboid-shaped vertebral bodies, pectus excavatum, hip dislocation, and hypoplastic pubic region and genitalia. Camptodactyly syndrome, Guadalajara type 2 has been described in two sisters and is most likely transmitted in an autosomal recessive manner. There have been no further descriptions in the literature since 1985.","definition_xrefs":["Orphanet:1326"],"direct_ancestors":[{"relation_name":"is_a","term_name":"camptodactyly syndrome, Guadalajara","termid":"MONDO:0000111"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome without intellectual disability","termid":"MONDO:0015161"},{"relation_name":"is_a","term_name":"dysostosis","termid":"MONDO:0018234"},{"relation_name":"is_a","term_name":"congenital limb malformation","termid":"MONDO:0019054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"camptodactyly syndrome, Guadalajara type 2","secondary_identifiers":["UMLS:C2931680","GARD:1068","MESH:C567138","MEDGEN:419870","SCTID:720603002","OMIM:211920"],"synonyms":[{"name":"Guadalajara camptodactyly syndrome type II","type":"related"},{"name":"camptodactyly syndrome Guadalajara type 2","type":"related"},{"name":"camptodactyly syndrome, Guadalajara, type 2","type":"related"},{"name":"camptodactyly syndrome, Guadalajara, type II","type":"related"}],"termid":"MONDO:0008899","xrefs":{"Monarch":{"xref_id":"0008899"}}}


id: GO:0089719
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an RHG (reaper/hid/grimm) domain/motif (AKA iap binding motif).","definition_xrefs":["GOC:ha","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"RHG protein domain binding","synonyms":[{"name":"RHG domain binding","type":"exact"},{"name":"iap binding domain binding","type":"exact"},{"name":"inhibitor of apoptosis binding domain binding","type":"exact"},{"name":"reaper hid grim domain binding","type":"exact"}],"termid":"GO:0089719"}


id: PR:Q9P7L6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A methyltransferase-like protein 8 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03864","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized methyltransferase-like protein SPBC21C3.07c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC21C3.07c","secondary_identifiers":["UniProtKB:Q9P7L6"],"synonyms":[{"name":"Spom972h-METTL8","type":"exact"}],"termid":"PR:Q9P7L6"}


id: PBO:0057412
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 548n","termid":"PBO:0057412"}


id: GO:0016338
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The attachment of one cell to another cell via adhesion molecules that do not require the presence of calcium for the interaction.","definition_xrefs":["GOC:hb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell adhesion via plasma-membrane adhesion molecules","termid":"GO:0098742"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules","synonyms":[{"name":"calcium-independent cell adhesion molecule activity","type":"related"}],"termid":"GO:0016338"}


id: GO:0033913
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the random hydrolysis of (1->2)-glucosidic linkages in (1->2)-beta-D-glucans.","definition_xrefs":["EC:3.2.1.71"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta-glucosidase activity","termid":"GO:0008422"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003674","GO:0016798","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"glucan endo-1,2-beta-glucosidase activity","secondary_identifiers":["MetaCyc:3.2.1.71-RXN"],"synonyms":[{"name":"1,2-beta-D-glucan glucanohydrolase activity","type":"related"},{"name":"beta-D-1,2-glucanase activity","type":"related"},{"name":"endo-(1->2)-beta-D-glucanase activity","type":"related"},{"name":"endo-1,2-beta-glucanase activity","type":"related"}],"termid":"GO:0033913"}


id: GO:0031458
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + H2O + a betaine(out) = ADP + phosphate + a betaine(in).","definition_xrefs":["GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic cation transmembrane transporter activity","termid":"GO:0015101"},{"relation_name":"is_a","term_name":"ABC-type transporter activity","termid":"GO:0140359"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"ABC-type betaine transporter activity","synonyms":[{"name":"ABC-type betaine transmembrane transporter activity","type":"exact"},{"name":"ATP-dependent betaine transporter activity","type":"exact"},{"name":"ATPase-coupled betaine transporter activity","type":"related"},{"name":"betaine ABC transporter","type":"narrow"},{"name":"betaine-transporting ATPase activity","type":"exact"}],"termid":"GO:0031458"}


id: PBO:0041864
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"caspase 9","termid":"PBO:0041864"}


id: GO:0018672
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: anthranilate + 2 H+ + NADPH + O2 = 2,3-dihydroxybenzoate + NADP+ + NH4.","definition_xrefs":["RHEA:21236","EC:1.14.13.35"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"anthranilate 3-monooxygenase (deaminating) activity","secondary_identifiers":["MetaCyc:1.14.13.35-RXN","KEGG_REACTION:R00980","UM-BBD_reactionID:r0578"],"synonyms":[{"name":"anthranilate 2,3-dioxygenase (deaminating)","type":"related"},{"name":"anthranilate 2,3-hydroxylase (deaminating) activity","type":"related"},{"name":"anthranilate hydroxylase (deaminating) activity","type":"exact"},{"name":"anthranilate hydroxylase activity","type":"broad"},{"name":"anthranilate,NADPH:oxygen oxidoreductase (3-hydroxylating, deaminating)","type":"related"}],"termid":"GO:0018672"}


id: PBO:0030146
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_caffeine","termid":"PBO:0030146"}


id: PBO:0089137
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1-phosphatidylinositol 4-kinase Lsb6","termid":"PBO:0089137"}


id: GO:0036242
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of glutamate into succinate, that includes the conversion of 4-aminobutyrate to succinate semialdehyde by the 2-oxoglutarate-dependent gamma aminobutyrate (GABA) transaminase.","definition_xrefs":["GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete glutamate catabolic process to succinate via 2-oxoglutarate-dependent GABA-transaminase activity (obsolete GO:0036242)","termid":"GO:0036242"}


id: GO:0048394
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell becomes capable of differentiating autonomously into a intermediate mesoderm cell regardless of its environment; upon determination, the cell fate cannot be reversed.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesodermal cell fate determination","termid":"GO:0007500"},{"relation_name":"part_of","term_name":"intermediate mesodermal cell fate commitment","termid":"GO:0048393"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"intermediate mesodermal cell fate determination","synonyms":[{"name":"intermediate mesoderm cell fate determination","type":"exact"}],"termid":"GO:0048394"}


id: GO:0140394
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of azoles, heterocyclic compound found in many biologically important substances, from one side of a membrane to the other according to the reaction: ATP + H2O + azole(in) = ADP + phosphate + azole(out).","definition_xrefs":["PMID:31501141","RHEA:33503"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ABC-type transporter activity","termid":"GO:0140359"},{"relation_name":"is_a","term_name":"azole transmembrane transporter activity","termid":"GO:1901474"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"ABC-type azole transporter activity","synonyms":[{"name":"ATPase-coupled azole transmembrane transporter activity","type":"related"},{"name":"azole ABC transporter activity","type":"exact"}],"termid":"GO:0140394"}


id: GO:0051052
data:
  {"annotated_genes":["SJAG_02822","SJAG_00573","SJAG_03417","SJAG_00364","SJAG_03097","SJAG_02074","SJAG_04457","SJAG_03720","SJAG_00995","SJAG_03300","SJAG_02214","SJAG_03624","SJAG_04205","SJAG_02724","SJAG_03957","SJAG_03160","SJAG_01068","SJAG_03048","SJAG_03695","SJAG_00823","SJAG_00369","SJAG_01205","SJAG_02592","SJAG_03219","SJAG_02104","SJAG_01584","SJAG_01677","SJAG_02194","SJAG_00266","SJAG_04671","SJAG_00247","SJAG_04855","SJAG_00100","SJAG_03438","SJAG_03997","SJAG_02162","SJAG_01210"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[108286],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010846"},{"annotations":[102684],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001033"},{"annotations":[112089],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904332"},{"annotations":[117178],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903464"},{"annotations":[102688,98096,109218],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903467"},{"annotations":[108289],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045128"},{"annotations":[112369,117606],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045739"},{"annotations":[117607,103643,112370],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903468"},{"annotations":[94208,110510],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000781"},{"annotations":[107725],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001034"},{"annotations":[102694,89383,116562,106946],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904514"},{"annotations":[108679,102697],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905263"},{"annotations":[96069],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090297"},{"annotations":[102698],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903465"},{"annotations":[79723],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045951"},{"annotations":[116746,89322,106460],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0120292"},{"annotations":[89384],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010845"},{"annotations":[97506],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032215"},{"annotations":[109405,110654],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000018"},{"annotations":[91235,73006],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000779"},{"annotations":[109643],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010569"},{"annotations":[94701,116614,89491],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010520"},{"annotations":[103547],"is_not":false,"rel_names":["regulates","is_a"],"summary":null,"term":"GO:1902681"},{"annotations":[77222],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032210"},{"annotations":[106960,99683,108839,103548],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0011000"},{"annotations":[99684,115356,102597],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031582"},{"annotations":[99685],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090001"},{"annotations":[102598],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071807"},{"annotations":[116563],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0062209"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving DNA.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of nucleobase-containing compound metabolic process","termid":"GO:0019219"},{"relation_name":"is_a","term_name":"regulation of macromolecule metabolic process","termid":"GO:0060255"},{"relation_name":"regulates","term_name":"DNA metabolic 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process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"regulation of DNA metabolism","type":"exact"}],"termid":"GO:0051052","terms_by_termid":{"GO:0000018":null,"GO:0010520":null,"GO:0010569":null,"GO:0010845":null,"GO:0010846":null,"GO:0011000":null,"GO:0031582":null,"GO:0032210":null,"GO:0032215":null,"GO:0045128":null,"GO:0045739":null,"GO:0045951":null,"GO:0062209":null,"GO:0071807":null,"GO:0090001":null,"GO:0090297":null,"GO:0120292":null,"GO:1902681":null,"GO:1903464":null,"GO:1903465":null,"GO:1903467":null,"GO:1903468":null,"GO:1904332":null,"GO:1904514":null,"GO:1905263":null,"GO:2000779":null,"GO:2000781":null,"GO:2001033":null,"GO:2001034":null}}


id: PBO:0068298
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 5","termid":"PBO:0068298"}


id: GO:0103107
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: castasterone + UDP-alpha-D-glucose = castasterone-23-O-glucoside + UDP + H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete castasterone 23-O-glucosyltransferase activity (obsolete GO:0103107)","termid":"GO:0103107"}


id: PBO:0056517
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane bound O-acyltransferase domain containing 4","termid":"PBO:0056517"}


id: PBO:0078578
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 53A, pseudogene","termid":"PBO:0078578"}


id: PBO:0046579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group K member 21, envelope","termid":"PBO:0046579"}


id: PR:P39964
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A cell division cycle 5-like protein that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR10641:SF17","OMA:SCHPO01129"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell division cycle 5-like protein","termid":"PR:000005216"},{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre-mRNA-splicing factor cdc5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC644.12","secondary_identifiers":["UniProtKB:P39964"],"synonyms":[{"name":"Spom972h-CDC5L","type":"exact"},{"name":"cell division control protein 5 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P39964"}


id: PBO:0071091
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 93","termid":"PBO:0071091"}


id: PBO:0089209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription factor, middle-meiotic Cuf2","termid":"PBO:0089209"}


id: PBO:0002477
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA replication factor C complex subunit Rfc2","termid":"PBO:0002477"}


id: PBO:0073121
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SEBOX homeobox","termid":"PBO:0073121"}


id: PBO:0081068
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZDHHC1 pseudogene 1","termid":"PBO:0081068"}


id: PBO:0040998
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bolA family member 3 pseudogene 3","termid":"PBO:0040998"}


id: GO:0070036
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: GTP + H2O = GDP + phosphate, to drive the unwinding of a DNA or RNA helix.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete GTP-dependent helicase activity (obsolete GO:0070036)","termid":"GO:0070036"}


id: PBO:0052261
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysine demethylase 2B","termid":"PBO:0052261"}


id: GO:0046166
data:
  {"annotated_genes":["SJAG_04192"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72438],"is_not":false,"summary":null,"term":"GO:0046166"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of glyceraldehyde-3-phosphate, an important intermediate in glycolysis.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glyceraldehyde-3-phosphate metabolic process","termid":"GO:0019682"},{"relation_name":"is_a","term_name":"aldehyde biosynthetic process","termid":"GO:0046184"},{"relation_name":"is_a","term_name":"organophosphate biosynthetic process","termid":"GO:0090407"},{"relation_name":"is_a","term_name":"carbohydrate derivative biosynthetic process","termid":"GO:1901137"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04192":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"glyceraldehyde-3-phosphate biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"glyceraldehyde 3-phosphate biosynthesis","type":"exact"},{"name":"glyceraldehyde 3-phosphate biosynthetic process","type":"exact"},{"name":"glyceraldehyde-3-phosphate anabolism","type":"exact"},{"name":"glyceraldehyde-3-phosphate biosynthesis","type":"exact"},{"name":"glyceraldehyde-3-phosphate formation","type":"exact"},{"name":"glyceraldehyde-3-phosphate synthesis","type":"exact"}],"termid":"GO:0046166","terms_by_termid":{"GO:0046166":null}}


id: GO:0015848
data:
  {"annotated_genes":["SJAG_02060","SJAG_02059","SJAG_02125"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[57939,117677,111264],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903711"}]},"cv_name":"biological_process","definition":"The directed movement of spermidine, N-(3-aminopropyl)-1,4-diaminobutane, a polyamine formed by the transfer of a propylamine group from decarboxylated S-adenosylmethionine to putrescine, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:krc","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic cation transport","termid":"GO:0015695"},{"relation_name":"is_a","term_name":"polyamine transport","termid":"GO:0015846"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02059":null,"SJAG_02060":null,"SJAG_02125":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"spermidine transport","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"termid":"GO:0015848","terms_by_termid":{"GO:1903711":null}}


id: PBO:0051729
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"integrator complex subunit 2","termid":"PBO:0051729"}


id: PBO:0087621
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the COP9 signalosome (CSN) complex; this complex cleaves the ubiquitin-like protein Nedd8 from SCF ubiquitin ligases; plays a role in the mating pheromone response","termid":"PBO:0087621"}


id: GO:0075299
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates, maintains or increases the frequency, rate or extent of frequency, rate or extent of zygospore formation, a process in which a thick-walled spore of some algae and fungi is formed by union of two similar sexual cells, usually serves as a resting spore, and produces the sporophytic phase.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of sexual sporulation resulting in formation of a cellular spore","termid":"GO:0043941"},{"relation_name":"is_a","term_name":"regulation of zygospore formation","termid":"GO:0075298"},{"relation_name":"positively_regulates","term_name":"zygospore formation","termid":"GO:0034296"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"positively_regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"positive regulation of zygospore formation","termid":"GO:0075299"}


id: MONDO:0971062
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An intellectual developmental disorder with language impairment and early-onset DOPA-responsive dystonia-parkinsonism in which the cause of the disease is a point mutation in the gene NR4A2.","definition_xrefs":["Orphanet:660012","MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intellectual developmental disorder with language impairment and early-onset DOPA-responsive dystonia-parkinsonism","termid":"MONDO:0859257"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0003441"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0003441"],"is_obsolete":false,"name":"developmental delay-language impairment-dopa responsive dystonia-parkinsonism syndrome due to a NR4A2 point mutation","secondary_identifiers":["MEDGEN:1863959","UMLS:C5925124"],"termid":"MONDO:0971062","xrefs":{"Monarch":{"xref_id":"0971062"}}}


id: MOD:00586
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative","definition_xrefs":["Unimod:264"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Unimod","termid":"MOD:00003"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphorylation to pyridyl thiol","synonyms":[{"name":"PET","type":"related"},{"name":"phosphorylation to pyridyl thiol","type":"related"}],"termid":"MOD:00586"}


id: PBO:0046406
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EPC1 antisense RNA 2","termid":"PBO:0046406"}


id: MONDO:0014126
data:
  {"annotated_genes":["SJAG_04738"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86333],"is_not":false,"summary":null,"term":"MONDO:0014126"}]},"cv_name":"mondo","definition":"Any Perrault syndrome in which the cause of the disease is a mutation in the LARS2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Perrault syndrome","termid":"MONDO:0017312"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04738":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005047"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0004069","MONDO:0006025","MONDO:0005047","MONDO:0005066"],"is_obsolete":false,"name":"Perrault syndrome 4","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C3809105","MEDGEN:815435","OMIM:615300","GARD:15943"],"synonyms":[{"name":"LARS2 Perrault syndrome","type":"exact"},{"name":"PRLTS4","type":"related"},{"name":"Perrault syndrome 4","type":"exact"},{"name":"Perrault syndrome caused by mutation in LARS2","type":"exact"},{"name":"Perrault syndrome type 4","type":"exact"}],"termid":"MONDO:0014126","terms_by_termid":{"MONDO:0014126":null},"xrefs":{"Monarch":{"xref_id":"0014126"}}}


id: GO:0150062
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Synaptic pruning mediated by complement system signaling.","definition_xrefs":["GOC:aruk","PMID:22632727","PMID:18083105","GOC:bc","PMID:29844190"],"direct_ancestors":[{"relation_name":"is_a","term_name":"synapse pruning","termid":"GO:0098883"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"complement-mediated synapse pruning","synonyms":[{"name":"complement-dependent synapse pruning","type":"exact"},{"name":"synapse clearance","type":"broad"},{"name":"synapse disassembly","type":"broad"},{"name":"synapse elimination","type":"broad"},{"name":"synapse removal","type":"broad"}],"termid":"GO:0150062"}


id: PR:P08092
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ran1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P08092"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"negative regulator of sexual conjugation and meiosis (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC19C2.05","synonyms":[{"name":"Spom972h-ran1","type":"exact"}],"termid":"PR:P08092"}


id: MONDO:0800158
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disorder of amino acid metabolism that has its basis in the disruption of the metabolism of glutamate/glutamine and aspartate/asparagine.","definition_xrefs":["MONDO:patterns/inborn_metabolic"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn disorder of amino acid metabolism","termid":"MONDO:0004736"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004736"],"is_obsolete":false,"name":"inborn disorder of glutamate/glutamine and aspartate/asparagine metabolism","termid":"MONDO:0800158","xrefs":{"Monarch":{"xref_id":"0800158"}}}


id: PBO:0041637
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium voltage-gated channel subunit alpha1 D","termid":"PBO:0041637"}


id: GO:0044229
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The region between the inner (cytoplasmic) and outer host membrane (Gram-negative Bacteria) or inner host membrane and host cell wall (Fungi).","definition_xrefs":["GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell part","termid":"GO:0033643"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell periplasmic space","termid":"GO:0044229"}


id: PBO:0089032
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methionine salvage haloacid dehalogenase-like hydrolase Utr4","termid":"PBO:0089032"}


id: PBO:0056551
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MCL1 apoptosis regulator, BCL2 family member","termid":"PBO:0056551"}


id: GO:0043410
data:
  {"annotated_genes":["SJAG_01787","SJAG_02135","SJAG_03903","SJAG_06621","SJAG_00610","SJAG_03453","SJAG_00845","SJAG_03828","SJAG_01587","SJAG_01199","SJAG_02183","SJAG_02945","SJAG_00027","SJAG_06622","SJAG_04666","SJAG_00318","SJAG_00781","SJAG_02486","SJAG_01978","SJAG_00424","SJAG_03969","SJAG_03705","SJAG_06592"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[103163,88404,92741,89759,91092,118236],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903139"},{"annotations":[112151,117700,112812,95582,109269,118614,109266,109268,109264,109265,109263,109267],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1900745"},{"annotations":[91173,104021,115917,114956,88463],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0062038"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the MAPK cascade.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of MAPK cascade","termid":"GO:0043408"},{"relation_name":"is_a","term_name":"positive regulation of intracellular signal transduction","termid":"GO:1902533"},{"relation_name":"positively_regulates","term_name":"MAPK cascade","termid":"GO:0000165"}],"gene_count":23,"genes_by_uniquename":{"SJAG_00027":null,"SJAG_00318":null,"SJAG_00424":null,"SJAG_00610":null,"SJAG_00781":null,"SJAG_00845":null,"SJAG_01199":null,"SJAG_01587":null,"SJAG_01787":null,"SJAG_01978":null,"SJAG_02135":null,"SJAG_02183":null,"SJAG_02486":null,"SJAG_02945":null,"SJAG_03453":null,"SJAG_03705":null,"SJAG_03828":null,"SJAG_03903":null,"SJAG_03969":null,"SJAG_04666":null,"SJAG_06592":null,"SJAG_06621":null,"SJAG_06622":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of MAPK cascade","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of MAPK cascade","type":"narrow"},{"name":"activation of MAPKKK cascade","type":"narrow"},{"name":"positive regulation of MAP kinase cascade","type":"exact"},{"name":"positive regulation of MAP kinase kinase kinase cascade","type":"exact"},{"name":"positive regulation of MAPKKK cascade","type":"exact"},{"name":"positive regulation of mitogen activated protein kinase kinase kinase cascade","type":"exact"},{"name":"positive regulation of mitogen-activated protein kinase cascade","type":"exact"},{"name":"positive regulation of mitogen-activated protein kinase kinase kinase cascade","type":"exact"},{"name":"stimulation of MAPK cascade","type":"exact"},{"name":"stimulation of MAPKKK cascade","type":"narrow"},{"name":"up regulation of MAPKKK cascade","type":"exact"},{"name":"up-regulation of MAPK cascade","type":"exact"},{"name":"up-regulation of MAPKKK cascade","type":"exact"},{"name":"upregulation of MAPK cascade","type":"exact"},{"name":"upregulation of MAPKKK cascade","type":"exact"}],"termid":"GO:0043410","terms_by_termid":{"GO:0062038":null,"GO:1900745":null,"GO:1903139":null}}


id: GO:0035399
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Positive regulation of a B cell mediated immune response mediated via cytokine production by a helper T cell.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of B cell mediated immunity","termid":"GO:0002714"},{"relation_name":"is_a","term_name":"helper T cell enhancement of adaptive immune response","termid":"GO:0035397"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"helper T cell enhancement of B cell mediated immune response","synonyms":[{"name":"helper T cell enhancement of B cell mediated immunity","type":"exact"},{"name":"provision of T cell help to B cell","type":"exact"}],"termid":"GO:0035399"}


id: PBO:0039123
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"apoptosis inducing factor mitochondria associated 1","termid":"PBO:0039123"}


id: PBO:0012539
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-regulates_o_results_in_acquisition_of_features_of","termid":"PBO:0012539"}


id: PBO:0085819
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; expressed at both mRNA and protein levels; SWAT-GFP and seamless-GFP fusion proteins localize to the endoplasmic reticulum and mCherry fusion protein localizes to the vacuole","termid":"PBO:0085819"}


id: GO:0071744
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An IgE immunoglobulin complex that is present in the plasma membrane of B cells and is composed of two identical immunoglobulin heavy chains of the IgE isotype and two identical immunoglobulin light chains and a signaling subunit, a heterodimer of the Ig-alpha and Ig-beta proteins.","definition_xrefs":["ISBN:0781765196","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"B cell receptor complex","termid":"GO:0019815"},{"relation_name":"is_a","term_name":"IgE immunoglobulin complex","termid":"GO:0071742"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005886","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"IgE B cell receptor complex","synonyms":[{"name":"membrane-bound IgE","type":"exact"},{"name":"surface IgE","type":"exact"}],"termid":"GO:0071744"}


id: PBO:0085680
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in prospore membrane morphogenesis; peripheral membrane protein that localizes to the prospore membrane and at numerous membrane contact sites; involved in sporulation, vacuolar protein sorting, prospore membrane formation during sporulation, and protein-Golgi retention; required for mitochondrial integrity; contains a PH-like domain; homologous to human CHAC and COH1 which are involved in Chorea-acanthocytosis and Cohen syndrome, respectively","termid":"PBO:0085680"}


id: PR:000041293
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A core histone that is encoded in the genome of Schizosaccharomyces pombe.","definition_xrefs":["PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"core histone (Schizosaccharomyces pombe)","synonyms":[{"name":"Spom-coreHistone","type":"exact"}],"termid":"PR:000041293"}


id: MONDO:0006653
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Fibrosis of the lung parenchyma caused by inhalation of carbon and silica dust. It manifests as shortness of breath.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pneumoconiosis","termid":"MONDO:0015926"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anthracosilicosis","secondary_identifiers":["MESH:D000874","SCTID:33548005","NCIT:C34389","UMLS:C0003164","EFO:1000813","MedDRA:10050363","DOID:10324","MEDGEN:1958","CSP:2596-4484"],"termid":"MONDO:0006653","xrefs":{"Monarch":{"xref_id":"0006653"}}}


id: MONDO:1011228
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Entropion that occurs in pig.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"entropion, non-human animal","termid":"MONDO:1010323"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"entropion, pig","secondary_identifiers":["OMIA:000337-9823"],"termid":"MONDO:1011228","xrefs":{"Monarch":{"xref_id":"1011228"}}}


id: GO:0097413
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Cytoplasmic, spherical inclusion commonly found in damaged neurons, and composed of abnormally phosphorylated, neurofilament proteins aggregated with ubiquitin and alpha-synuclein.","definition_xrefs":["NIF_Subcellular:sao4933778419"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inclusion body","termid":"GO:0016234"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"Lewy body","synonyms":[{"name":"cytoplasmic inclusion","type":"related"}],"termid":"GO:0097413"}


id: PBO:0084393
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Lsm (Like Sm) protein; forms heteroheptameric complex (with Lsm2p, Lsm3p, Lsm4p, Lsm5p, Lsm6p, and Lsm7p) that is part of spliceosomal U6 snRNP and is also implicated in processing of pre-tRNA, pre-snoRNA, and pre-rRNA","termid":"PBO:0084393"}


id: GO:0022017
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The division of neuroblasts in the pallium. Neuroblasts are precursor cells that give rise to neurons.","definition_xrefs":["GOC:dph","GOC:jid","GOC:dgh","GO_REF:0000021","GOC:cls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"forebrain neuroblast division","termid":"GO:0021873"},{"relation_name":"part_of","term_name":"pallium cell proliferation in forebrain","termid":"GO:0022013"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neuroblast division in pallium","termid":"GO:0022017"}


id: GO:1900397
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of pyrimidine nucleotide biosynthetic process.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of nucleotide biosynthetic process","termid":"GO:0030808"},{"relation_name":"regulates","term_name":"pyrimidine nucleotide biosynthetic process","termid":"GO:0006221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055086"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0055086"],"is_obsolete":false,"name":"regulation of pyrimidine nucleotide biosynthetic process","synonyms":[{"name":"regulation of pyrimidine nucleotide anabolism","type":"exact"},{"name":"regulation of pyrimidine nucleotide biosynthesis","type":"exact"},{"name":"regulation of pyrimidine nucleotide formation","type":"exact"},{"name":"regulation of pyrimidine nucleotide synthesis","type":"exact"}],"termid":"GO:1900397"}


id: GO:0044550
data:
  {"annotated_genes":["SJAG_04032","SJAG_04516","SJAG_04031","SJAG_00792","SJAG_02599","SJAG_01351","SJAG_00469","SJAG_00988"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94428,94435,105721],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031169"},{"annotations":[94381],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:1905569"},{"annotations":[108756,71173,97338,93637],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046938"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of secondary metabolites, the compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biosynthetic process","termid":"GO:0009058"},{"relation_name":"is_a","term_name":"secondary metabolic process","termid":"GO:0019748"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00469":null,"SJAG_00792":null,"SJAG_00988":null,"SJAG_01351":null,"SJAG_02599":null,"SJAG_04031":null,"SJAG_04032":null,"SJAG_04516":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"secondary metabolite biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"secondary metabolite biosynthesis","type":"exact"}],"termid":"GO:0044550","terms_by_termid":{"GO:0031169":null,"GO:0046938":null,"GO:1905569":null}}


id: PBO:0003683
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sequence orphan Meu25","termid":"PBO:0003683"}


id: PBO:0081743
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 674","termid":"PBO:0081743"}


id: PBO:0072605
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal L24 domain containing 1","termid":"PBO:0072605"}


id: MONDO:0002460
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A cancer that involves the lacrimal apparatus.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"ocular cancer","termid":"MONDO:0002236"},{"relation_name":"is_a","term_name":"lacrimal apparatus disorder","termid":"MONDO:0001854"},{"relation_name":"is_a","term_name":"ocular cancer","termid":"MONDO:0002236"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0005328"],"is_obsolete":false,"name":"lacrimal system cancer","secondary_identifiers":["SCTID:416510003","NCIT:C5102","UMLS:C1334361","DOID:292","MEDGEN:272790"],"synonyms":[{"name":"cancer of lacrimal apparatus","type":"exact"},{"name":"lacrimal apparatus cancer","type":"exact"},{"name":"lacrimal system neoplasm","type":"exact"},{"name":"lacrimal system neoplasms","type":"exact"},{"name":"lacrimal system tumor","type":"exact"},{"name":"lacrimal system tumour","type":"exact"},{"name":"malignant lacrimal apparatus neoplasm","type":"exact"},{"name":"malignant neoplasm of lacrimal apparatus","type":"exact"},{"name":"neoplasm of lacrimal system","type":"exact"},{"name":"neoplasm of the lacrimal system","type":"exact"},{"name":"tumor of lacrimal system","type":"exact"},{"name":"tumor of the lacrimal system","type":"exact"},{"name":"tumour of lacrimal system","type":"exact"},{"name":"tumour of the lacrimal system","type":"exact"}],"termid":"MONDO:0002460","xrefs":{"Monarch":{"xref_id":"0002460"}}}


id: MONDO:0004733
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A primary or metastatic malignant neoplasm that affects the pyriform sinus.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hypopharynx cancer","termid":"MONDO:0005806"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0004335"],"is_obsolete":false,"name":"pyriform sinus cancer","secondary_identifiers":["NCIT:C3531","MEDGEN:102267","DOID:9235","ICD10CM:C12","SCTID:363401000","UMLS:C0153400","ICD9:148.1"],"synonyms":[{"name":"malignant neoplasm of pyriform fossa","type":"exact"},{"name":"malignant neoplasm of pyriform sinus","type":"exact"},{"name":"malignant neoplasm of the pyriform fossa","type":"exact"},{"name":"malignant neoplasm of the pyriform sinus","type":"exact"},{"name":"malignant pyriform fossa neoplasm","type":"exact"},{"name":"malignant pyriform fossa tumor","type":"exact"},{"name":"malignant pyriform fossa tumour","type":"exact"},{"name":"malignant pyriform sinus neoplasm","type":"exact"},{"name":"malignant pyriform sinus tumor","type":"exact"},{"name":"malignant pyriform sinus tumour","type":"exact"},{"name":"malignant tumor of pyriform fossa","type":"exact"},{"name":"malignant tumor of pyriform sinus","type":"exact"},{"name":"malignant tumor of the pyriform fossa","type":"exact"},{"name":"malignant tumor of the pyriform sinus","type":"exact"},{"name":"malignant tumour of pyriform fossa","type":"exact"},{"name":"malignant tumour of pyriform sinus","type":"exact"},{"name":"malignant tumour of the pyriform fossa","type":"exact"},{"name":"malignant tumour of the pyriform sinus","type":"exact"}],"termid":"MONDO:0004733","xrefs":{"Monarch":{"xref_id":"0004733"}}}


id: PBO:0091761
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"M-specific trancription factor Mi","termid":"PBO:0091761"}


id: GO:0102445
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3',4',5,7-tetrahydroxy-3-methoxyflavone + S-adenosyl-L-methionine = 3,3'-O-dimethylquercetin + H+ + S-adenosyl-L-homocysteine.","definition_xrefs":["RHEA:74715"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016741","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"3-methylquercetin 3'-O-methyltransferase activity","secondary_identifiers":["MetaCyc:RXN-13930"],"termid":"GO:0102445"}


id: PBO:0064347
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plexin B1","termid":"PBO:0064347"}


id: PBO:0063514
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decaprenyl diphosphate synthase subunit 2","termid":"PBO:0063514"}


id: GO:0006535
data:
  {"annotated_genes":["SJAG_04305","SJAG_00582","SJAG_01880"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73015,76482,77840],"is_not":false,"summary":null,"term":"GO:0006535"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of cysteine from other compounds, including serine.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-serine metabolic process","termid":"GO:0006563"},{"relation_name":"is_a","term_name":"cysteine biosynthetic process","termid":"GO:0019344"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00582":null,"SJAG_01880":null,"SJAG_04305":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0006790","GO:0006520","GO:0044281"],"is_obsolete":false,"name":"cysteine biosynthetic process from serine","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:CYSTSYN-PWY"],"synonyms":[{"name":"cysteine anabolism from serine","type":"exact"},{"name":"cysteine formation from serine","type":"exact"},{"name":"cysteine synthesis from serine","type":"exact"}],"termid":"GO:0006535","terms_by_termid":{"GO:0006535":null}}


id: PBO:0073607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sucrase-isomaltase","termid":"PBO:0073607"}


id: PBO:0110365
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EPCIP antisense RNA 1","termid":"PBO:0110365"}


id: MONDO:0044266
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Berg and Bearn (1966, 1966) discovered an X-linked serum protein type by means of heteroantiserum made specific by absorption. Since the group-specific antigen appears to be located in the alpha-2-macroglobulin of serum, the name Xm was assigned to the system. The distribution of phenotypes in families and in populations was consistent with X-linkage.","definition_xrefs":["OMIM:314900"],"gene_count":0,"genotype_count":0,"name":"obsolete xm system (obsolete MONDO:0044266)","secondary_identifiers":["HGNC:12813"],"synonyms":[{"name":"XM system","type":"related"}],"termid":"MONDO:0044266","xrefs":{"Monarch":{"xref_id":"0044266"}}}


id: PBO:0053322
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 111","termid":"PBO:0053322"}


id: GO:1905387
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a beta-carotene stimulus.","definition_xrefs":["PMID:16771696","GOC:TermGenie","GO_REF:0000071"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to lipid","termid":"GO:0033993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to beta-carotene","synonyms":[{"name":"response to beta,beta-carotene","type":"exact"}],"termid":"GO:1905387"}


id: PBO:0084177
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Histone acetyltransferase; critical for cell survival in presence of DNA damage during S phase, required for recovery after DSB repair; acetylates H3K56, H3K9; H3K56 acetylation activity required for expression homeostasis, buffering of mRNA synthesis rate against changes in gene dosage during S phase; involved in non-homologous end joining and regulation of Ty1 transposition; prevents hyper-amplification of rDNA; interacts physically with Vps75p","termid":"PBO:0084177"}


id: PBO:0011970
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DYRK family protein kinase Pom2","termid":"PBO:0011970"}


id: GO:0035883
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized structural and/or functional features of an enteroendocrine cell. Enteroendocrine cells are hormonally active epithelial cells in the gut that constitute the diffuse neuroendocrine system.","definition_xrefs":["CL:0000164","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell differentiation","termid":"GO:0030855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"enteroendocrine cell differentiation","termid":"GO:0035883"}


id: GO:0035870
data:
  {"annotated_genes":["SJAG_03797","SJAG_04487"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[99313,118935],"is_not":false,"summary":null,"term":"GO:0035870"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: dITP + H2O = dIMP + H+ + diphosphate.","definition_xrefs":["RHEA:28342","PMID:21548881","GOC:dgf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside triphosphate diphosphatase activity","termid":"GO:0047429"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03797":null,"SJAG_04487":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0047429"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0047429","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"dITP diphosphatase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["KEGG_REACTION:R03531","Reactome:R-HSA-2509838","MetaCyc:RXN0-1602"],"synonyms":[{"name":"2'-deoxyinosine-5'-triphosphate pyrophosphohydrolase activity","type":"exact"},{"name":"dITP pyrophosphatase activity","type":"exact"},{"name":"deoxyinosine triphosphate pyrophosphatase activity","type":"exact"}],"termid":"GO:0035870","terms_by_termid":{"GO:0035870":null}}


id: PBO:0004250
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"substrate myristic acid preferring","termid":"PBO:0004250"}


id: GO:0046158
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving ocellus pigments, any general or particular coloring matter in living organisms, found or utilized in the ocellus, a minute simple eye found in many invertebrates.","definition_xrefs":["PMID:15176085","GOC:ai","PMID:18421706"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secondary metabolic process","termid":"GO:0019748"},{"relation_name":"is_a","term_name":"pigment metabolic process involved in pigmentation","termid":"GO:0043474"},{"relation_name":"part_of","term_name":"ocellus pigmentation","termid":"GO:0033060"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"ocellus pigment metabolic process","synonyms":[{"name":"ocellus pigment metabolism","type":"exact"}],"termid":"GO:0046158"}


id: GO:0098945
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the presynaptic active zone membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.","definition_xrefs":["GOC:dos","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete intrinsic component of presynaptic active zone membrane (obsolete GO:0098945)","synonyms":[{"name":"intrinsic to presynaptic active zone membrane","type":"narrow"}],"termid":"GO:0098945"}


id: PBO:0039886
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARHGAP42 pseudogene 3","termid":"PBO:0039886"}


id: FYPO:0002230
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a vegetatively growing cell is inviable, has a larger volume than normal, and is curved along the long axis. In a curved cell, the long axis follows a smooth bend rather than a straight line. In a swollen cell, both length and diameter may be greater than normal, although the cell is only considered elongated if the length:diameter ratio is also greater than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable curved vegetative cell","termid":"FYPO:0002113"},{"relation_name":"is_a","term_name":"inviable swollen vegetative cell with abnormal cell shape","termid":"FYPO:0002415"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000005","FYPO:0000004","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"inviable swollen curved vegetative cell","synonyms":[{"name":"inviable curved cell with increased cell size","type":"related"},{"name":"inviable curved cell with increased cell volume","type":"exact"},{"name":"inviable enlarged curved cell","type":"related"},{"name":"inviable large curved cell","type":"related"},{"name":"inviable swollen curved cell","type":"exact"},{"name":"inviable swollen curved cell during vegetative growth","type":"exact"},{"name":"inviable swollen curved inviable cell","type":"exact"},{"name":"inviable swollen curved vegetative cell during mitotic cell cycle","type":"related"},{"name":"lethal; swollen curved vegetative cell","type":"exact"}],"termid":"FYPO:0002230"}


id: GO:0160202
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A structural component of the microsporidian spore's invasion apparatus that is located at the anterior end of the spore and serves to attach the polar tube to the inside of the spore wall.","definition_xrefs":["PMID:16005007","PMID:19673893"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"polar tube anchoring disc","termid":"GO:0160202"}


id: GO:1904161
data:
  {"annotated_genes":["SJAG_05197","SJAG_00814","SJAG_04877","SJAG_02818"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[77227,95561,103146,109431],"is_not":false,"summary":null,"term":"GO:1904161"}]},"cv_name":"biological_process","definition":"Any DNA synthesis that is involved in UV-damage excision repair.","definition_xrefs":["GOC:TermGenie","GO_REF:0000060","PMID:10704216"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA synthesis involved in DNA repair","termid":"GO:0000731"},{"relation_name":"part_of","term_name":"UV-damage excision repair","termid":"GO:0070914"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00814":null,"SJAG_02818":null,"SJAG_04877":null,"SJAG_05197":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006259","GO:0006281","GO:0008150"],"is_obsolete":false,"name":"DNA synthesis involved in UV-damage excision repair","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"DNA synthesis during UV-damage excision repair","type":"related"},{"name":"DNA synthesis during UV-damaged DNA endonuclease-dependent excision repair","type":"related"},{"name":"DNA synthesis during UVDE-dependent excision repair","type":"related"},{"name":"DNA synthesis during UVER","type":"related"},{"name":"DNA synthesis involved in AER","type":"related"},{"name":"DNA synthesis involved in UV-damaged DNA endonuclease-dependent excision repair","type":"exact"},{"name":"DNA synthesis involved in UVDE-dependent excision repair","type":"exact"},{"name":"DNA synthesis involved in UVER","type":"exact"},{"name":"DNA synthesis involved in alternative excision repair","type":"related"},{"name":"mitotic DNA repair synthesis involved in UV-damage excision repair","type":"narrow"},{"name":"mitotic DNA repair synthesis involved in UV-damaged DNA endonuclease-dependent excision repair","type":"narrow"},{"name":"mitotic DNA repair synthesis involved in UVDE-dependent excision repair","type":"narrow"},{"name":"mitotic DNA repair synthesis involved in UVER","type":"narrow"}],"termid":"GO:1904161","terms_by_termid":{"GO:1904161":null}}


id: GO:0097645
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to amylin.","definition_xrefs":["PMID:10871296","GOC:bhm","PMID:12037140","PMID:18687416"],"direct_ancestors":[{"relation_name":"is_a","term_name":"calcitonin family binding","termid":"GO:0097644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"amylin binding","termid":"GO:0097645"}


id: PBO:0069408
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 668, pseudogene","termid":"PBO:0069408"}


id: PBO:0005038
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fun thirty related protein Fft2 (predicted)","termid":"PBO:0005038"}


id: _global:produced_by
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"a produced_by b iff some process that occurs_in b has_output a.","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"produced_by","secondary_identifiers":["RO:0003001"],"termid":"_global:produced_by"}


id: MONDO:0019730
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Light chain deposition disease (LCDD) is a rare condition characterized by the deposition of specific proteins (monoclonal light chains) in the kidneys and other organs. Light chains are used to make antibodies that the body needs to fight infection. People with LCDD make too many light chains, which get deposited in many body tissues. While LCDD can occur in any organ, the kidneys are always involved. Signs and symptoms of LCDD may include protein in the urine ; decreased kidney function; and/or nephrotic syndrome. Rarely, a person with LCDD may have symptoms from cardiac (heart) or liver involvement. The underlying cause of LCDD is unknown. It is often associated with multiple myeloma. LCDD may progress to multiple myeloma, or it may be present with multiple myeloma when it is first diagnosed. The goal of treating LCDD is to slow the production of light chains and their damage to organs. Treatment may include chemotherapy with a drug called Bortezomib ; autologous stem cell transplantation ; immunomodulatory drugs; and/or kidney transplant. If untreated, end-stage renal disease occurs in 70% of cases.","direct_ancestors":[{"relation_name":"is_a","term_name":"non-amyloid monoclonal immunoglobulin deposition disease","termid":"MONDO:0019463"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"light chain deposition disease","secondary_identifiers":["SCTID:373604002","icd11.foundation:1612001446","UMLS:C0238239","MEDGEN:65953","Orphanet:93558","NCIT:C7727","GARD:6906"],"synonyms":[{"name":"Bence Jones myeloma","type":"exact"},{"name":"LCDD","type":"exact"},{"name":"Light chain disease","type":"exact"},{"name":"Light chain gammopathy","type":"exact"},{"name":"Light-chain deposition disease","type":"related"}],"termid":"MONDO:0019730","xrefs":{"Monarch":{"xref_id":"0019730"}}}


id: PBO:0034703
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Clr6 histone deacetylase associated PHD protein Cph2","termid":"PBO:0034703"}


id: MONDO:0003647
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"tympanic membrane disorder","termid":"MONDO:0003648"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"atrophic flaccid tympanic membrane","secondary_identifiers":["ICD9:384.81","DOID:5781","UMLS:C0155470","MEDGEN:509982","SCTID:38645004"],"termid":"MONDO:0003647","xrefs":{"Monarch":{"xref_id":"0003647"}}}


id: PBO:0075310
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"suppressor of cytokine signaling 5 pseudogene 2","termid":"PBO:0075310"}


id: GO:0061674
data:
  {"annotated_genes":["SJAG_16460"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96199],"is_not":false,"summary":null,"term":"GO:0061674"}]},"cv_name":"biological_process","definition":"Repair of the gaps in the DNA helix using a discontinuous template during double-strand break repair via nonhomologous end joining.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA metabolic process","termid":"GO:0006259"},{"relation_name":"part_of","term_name":"double-strand break repair via nonhomologous end joining","termid":"GO:0006303"}],"gene_count":1,"genes_by_uniquename":{"SJAG_16460":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006281"}],"interesting_parent_ids":["GO:0006259","GO:0008150","GO:0006281"],"is_obsolete":false,"name":"gap filling involved in double-strand break repair via nonhomologous end joining","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0061674","terms_by_termid":{"GO:0061674":null}}


id: MONDO:0022314
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Hernandez Aguirre-Negrete syndrome (obsolete MONDO:0022314)","termid":"MONDO:0022314","xrefs":{"Monarch":{"xref_id":"0022314"}}}


id: PBO:0080048
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 21","termid":"PBO:0080048"}


id: PBO:0030400
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_nuclear_import","termid":"PBO:0030400"}


id: PBO:0058356
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4729","termid":"PBO:0058356"}


id: PBO:0079606
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBE2F pseudogene 3","termid":"PBO:0079606"}


id: GO:0036065
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The covalent attachment of a fucosyl group to an acceptor molecule.","definition_xrefs":["GOC:sart","PMID:19948734"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycosylation","termid":"GO:0070085"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"fucosylation","termid":"GO:0036065"}


id: GO:0140274
data:
  {"annotated_genes":["SJAG_01224","SJAG_04140","SJAG_01805","SJAG_01837","SJAG_00082","SJAG_03048"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[98949],"is_not":false,"summary":null,"term":"GO:0140274"},{"annotations":[117008,90324,102701,94130,111531],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140429"},{"annotations":[117011],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904967"}]},"cv_name":"biological_process","definition":"The cell cycle process where kinetochore microtubule attachment defects are corrected.","definition_xrefs":["PMID:15525536"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle process","termid":"GO:0022402"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00082":null,"SJAG_01224":null,"SJAG_01805":null,"SJAG_01837":null,"SJAG_03048":null,"SJAG_04140":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"repair of kinetochore microtubule attachment defect","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"correction of kinetochore microtubule attachment defects","type":"exact"},{"name":"repair of kinetochore microtubule attachment defects","type":"exact"}],"termid":"GO:0140274","terms_by_termid":{"GO:0140274":null,"GO:0140429":null,"GO:1904967":null}}


id: PBO:0076298
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spectrin repeat containing nuclear envelope protein 2","termid":"PBO:0076298"}


id: GO:0010368
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex whose composition varies amongst species; in rice it probably exists in a homo-tetramer to homo-hexamer form and in Gram negative bacteria as a dimer. Functions in the hydrolysis of alpha-(1,6)-D-glucosidic branch linkages. Isoamylases in plants are intracellular and probably chloroplast localized.","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isoamylase complex","termid":"GO:0043033"},{"relation_name":"part_of","term_name":"chloroplast","termid":"GO:0009507"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"chloroplast isoamylase complex","termid":"GO:0010368"}


id: MONDO:0016973
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete thymoma type A (obsolete MONDO:0016973)","termid":"MONDO:0016973","xrefs":{"Monarch":{"xref_id":"0016973"}}}


id: GO:0009466
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete class I cytochrome c (obsolete GO:0009466)","synonyms":[{"name":"class I cytochrome c","type":"exact"}],"termid":"GO:0009466"}


id: PBO:0070910
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L17 pseudogene 18","termid":"PBO:0070910"}


id: PBO:0051960
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ITPRID2 divergent transcript","termid":"PBO:0051960"}


id: GO:0006569
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of L-tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid.","definition_xrefs":["ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-tryptophan metabolic process","termid":"GO:0006568"},{"relation_name":"is_a","term_name":"aromatic amino acid family catabolic process","termid":"GO:0009074"},{"relation_name":"is_a","term_name":"indole-containing compound catabolic process","termid":"GO:0042436"},{"relation_name":"is_a","term_name":"erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process","termid":"GO:1902222"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0008150","GO:0006520","GO:0044281"],"is_obsolete":false,"name":"L-tryptophan catabolic process","secondary_identifiers":["Reactome:R-HSA-71240"],"synonyms":[{"name":"tryptophan breakdown","type":"exact"},{"name":"tryptophan catabolic process","type":"related"},{"name":"tryptophan catabolic process, using tryptophanase","type":"narrow"},{"name":"tryptophan catabolism","type":"exact"},{"name":"tryptophan catabolism, using tryptophanase","type":"narrow"},{"name":"tryptophan degradation","type":"exact"}],"termid":"GO:0006569"}


id: PBO:0079088
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Tyr (anticodon GTA) 5-1","termid":"PBO:0079088"}


id: MONDO:0009373
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Seizures-intellectual disability due to hydroxylysinuria syndrome is characterized by hydroxylysinuria, myoclonic and motor seizures and intellectual deficit. It has been described in a brother and sister born to consanguineous parents and in one unrelated patient.","definition_xrefs":["Orphanet:79156"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn disorder of lysine and hydroxylysine metabolism","termid":"MONDO:0017351"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004736"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004736"],"is_obsolete":false,"name":"seizures-intellectual disability due to hydroxylysinuria syndrome","secondary_identifiers":["GARD:16709","UMLS:C1855986","MEDGEN:343450","MESH:C565502","OMIM:236900"],"synonyms":[{"name":"hydroxylysinuria","type":"related"}],"termid":"MONDO:0009373","xrefs":{"Monarch":{"xref_id":"0009373"}}}


id: PBO:0053903
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1193","termid":"PBO:0053903"}


id: MONDO:0000144
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pregnancy loss, recurrent, susceptibility","termid":"MONDO:0000144","xrefs":{"Monarch":{"xref_id":"0000144"}}}


id: PBO:0088642
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endoplasmic reticulum EF hand protein","termid":"PBO:0088642"}


id: PBO:0036030
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-incomplete_septum","termid":"PBO:0036030"}


id: GO:0043362
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A developmental process, independent of morphogenetic (shape) change, that is required for a nucleate erythrocyte to attain its fully functional state. A nucleate erythrocyte is an erythrocyte with a nucleus.","definition_xrefs":["GOC:jl","GOC:devbiol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"erythrocyte maturation","termid":"GO:0043249"},{"relation_name":"part_of","term_name":"nucleate erythrocyte development","termid":"GO:0048823"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"nucleate erythrocyte maturation","synonyms":[{"name":"nucleate RBC maturation","type":"exact"},{"name":"nucleate red blood cell maturation","type":"exact"}],"termid":"GO:0043362"}


id: MOD:01136
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:309"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DeltaMass","termid":"MOD:00947"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dioctyl phthalate","termid":"MOD:01136"}


id: PBO:0079285
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin tyrosine ligase like 4","termid":"PBO:0079285"}


id: MONDO:0045052
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A non-metastasizing bone-forming neoplasm. This category includes osteoma, osteoid osteoma, and osteoblastoma.","definition_xrefs":["NCIT:C6602"],"direct_ancestors":[{"relation_name":"is_a","term_name":"benign connective and soft tissue neoplasm","termid":"MONDO:0000654"},{"relation_name":"is_a","term_name":"osteogenic neoplasm","termid":"MONDO:0045053"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"benign osteogenic neoplasm","secondary_identifiers":["UMLS:C1332523","MEDGEN:231943"],"synonyms":[{"name":"benign osseous neoplasm","type":"related"},{"name":"benign osseous tumor","type":"related"},{"name":"benign osseous tumour","type":"related"},{"name":"benign osteogenic neoplasm","type":"exact"},{"name":"benign osteogenic tumor","type":"exact"},{"name":"benign osteogenic tumour","type":"exact"},{"name":"osteogenic neoplasm, benign","type":"exact"}],"termid":"MONDO:0045052","xrefs":{"Monarch":{"xref_id":"0045052"}}}


id: PBO:0003535
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acetylglutamate synthase Arg6 (predicted)","termid":"PBO:0003535"}


id: MONDO:0009385
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyperleucine-Isoleucinemia","secondary_identifiers":["SCTID:7046009","UMLS:C0268574","MEDGEN:82821","MESH:C562674","OMIM:238340"],"synonyms":[{"name":"hyperleucine-Isoleucinemia","type":"exact"}],"termid":"MONDO:0009385","xrefs":{"Monarch":{"xref_id":"0009385"}}}


id: PBO:0063715
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PGM5P3 antisense RNA 1","termid":"PBO:0063715"}


id: MONDO:0100432
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any immunodeficiency in which the cause of the disease is a mutation in the FNIP1 gene. Disruption of Folliculin Interacting Protein 1 alters the essential metabolic regulators AMPK and mTOR, resulting in profound B-cell deficiency, hypertrophic cardiomyopathy, and pre-excitation syndrome.","definition_xrefs":["PMID:32181500"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immunodeficiency disease","termid":"MONDO:0021094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"FNIP1-associated syndrome","synonyms":[{"name":"FNIP1 deficiency","type":"exact"},{"name":"absent B cells, agammaglobulinemia, and hypertrophic cardiomyopathy syndrome","type":"exact"},{"name":"immunodeficiency with cardiomyopathy and pre-excitation syndrome","type":"exact"}],"termid":"MONDO:0100432","xrefs":{"Monarch":{"xref_id":"0100432"}}}


id: PBO:0030823
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_chlorpromazine","termid":"PBO:0030823"}


id: MONDO:0002541
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A oligodendroglioma that involves the spinal cord.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spinal cord glioma","termid":"MONDO:0002542"},{"relation_name":"is_a","term_name":"oligodendroglioma","termid":"MONDO:0016695"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"spinal cord oligodendroglioma","secondary_identifiers":["MEDGEN:138055","NCIT:C4535","SCTID:254950006","UMLS:C0346295","DOID:3184"],"synonyms":[{"name":"oligodendroglioma of spinal cord","type":"exact"},{"name":"spinal cord oligodendroglioma","type":"exact"},{"name":"well differentiated spinal cord oligodendroglial tumor","type":"exact"},{"name":"well differentiated spinal cord oligodendroglial tumour","type":"exact"},{"name":"well differentiated spinal cord oligodendroglioma","type":"exact"}],"termid":"MONDO:0002541","xrefs":{"Monarch":{"xref_id":"0002541"}}}


id: PBO:0069375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 635, pseudogene","termid":"PBO:0069375"}


id: FYPO:0006744
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the nucleus is decreased during a cellular response to tschimganine.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to nucleus during vegetative growth","termid":"FYPO:0001129"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000138","FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased protein localization to nucleus during cellular response to tschimganine","synonyms":[{"name":"decreased protein localisation to nucleus during cellular response to tschimganine","type":"exact"},{"name":"decreased protein localization to nucleus during cellular response to TMN","type":"exact"},{"name":"decreased protein localization to nucleus during cellular response to tschimganine during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to nucleus during cellular response to tschimganine during vegetative growth","type":"exact"},{"name":"reduced protein localization to nucleus during cellular response to tschimganine","type":"exact"}],"termid":"FYPO:0006744"}


id: PBO:0082847
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Copper-binding protein of the mitochondrial intermembrane space; evolutionarily conserved; may be involved in delivering copper from the matrix to the cytochrome c oxidase complex; contains a twin CX9C motif","termid":"PBO:0082847"}


id: GO:1905088
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of synaptonemal complex assembly.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:24797370"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular component biogenesis","termid":"GO:0044089"},{"relation_name":"is_a","term_name":"positive regulation of cell cycle process","termid":"GO:0090068"},{"relation_name":"is_a","term_name":"regulation of synaptonemal complex assembly","termid":"GO:0090173"},{"relation_name":"is_a","term_name":"positive regulation of reproductive process","termid":"GO:2000243"},{"relation_name":"is_a","term_name":"positive regulation of chromosome organization","termid":"GO:2001252"},{"relation_name":"positively_regulates","term_name":"synaptonemal complex assembly","termid":"GO:0007130"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0007049"],"is_obsolete":false,"name":"positive regulation of synaptonemal complex assembly","synonyms":[{"name":"activation of synaptonemal complex assembly","type":"narrow"},{"name":"activation of synaptonemal complex formation","type":"narrow"},{"name":"positive regulation of synaptonemal complex formation","type":"exact"},{"name":"up regulation of synaptonemal complex assembly","type":"exact"},{"name":"up regulation of synaptonemal complex formation","type":"exact"},{"name":"up-regulation of synaptonemal complex assembly","type":"exact"},{"name":"up-regulation of synaptonemal complex formation","type":"exact"},{"name":"upregulation of synaptonemal complex assembly","type":"exact"},{"name":"upregulation of synaptonemal complex formation","type":"exact"}],"termid":"GO:1905088"}


id: MONDO:0014124
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Adams-Oliver syndrome in which the cause of the disease is a mutation in the EOGT gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Adams-Oliver syndrome","termid":"MONDO:0007034"},{"relation_name":"is_a","term_name":"non-syndromic limb reduction defect","termid":"MONDO:0019713"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"Adams-Oliver syndrome 4","secondary_identifiers":["UMLS:C3809092","GARD:15941","OMIM:615297","MEDGEN:815422"],"synonyms":[{"name":"AOS4","type":"related"},{"name":"Adams-Oliver syndrome 4","type":"exact"},{"name":"Adams-Oliver syndrome caused by mutation in EOGT","type":"exact"},{"name":"Adams-Oliver syndrome type 4","type":"exact"},{"name":"EOGT Adams-Oliver syndrome","type":"exact"}],"termid":"MONDO:0014124","xrefs":{"Monarch":{"xref_id":"0014124"}}}


id: GO:0102832
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: verbascose + alpha-D-galactosyl-(1->3)-1D-myo-inositol = ajugose + myo-inositol.","definition_xrefs":["GOC:pz","PMID:11675396"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016757"],"is_obsolete":false,"name":"verbascose galactinol:ajugose galactosyltransferase activity","secondary_identifiers":["MetaCyc:RXN-8288"],"termid":"GO:0102832"}


id: PBO:0044353
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CYCS pseudogene 40","termid":"PBO:0044353"}


id: MONDO:0019758
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Midline interhemispheric variant of holoprosencephaly (MIH) or syntelencephaly is a form of holoprosencephaly (HPE) characterized by non-separation of the posterior frontal and parietal lobes, normally-formed callosal genu and splenium, absence of the callosal body, normally-separated hypothalamus and lentiform nucleus, and frequent heterotopic gray matter.","definition_xrefs":["Orphanet:93926"],"gene_count":0,"genotype_count":0,"name":"obsolete midline interhemispheric variant of holoprosencephaly (obsolete MONDO:0019758)","synonyms":[{"name":"MIH","type":"exact"},{"name":"MIH type HPE","type":"exact"},{"name":"MIHF","type":"exact"},{"name":"MIHV","type":"exact"},{"name":"Syntelencephaly","type":"exact"},{"name":"middle interhemispheric fusion variant","type":"exact"},{"name":"middle interhemispheric variant of holoprosencephaly","type":"exact"}],"termid":"MONDO:0019758","xrefs":{"Monarch":{"xref_id":"0019758"}}}


id: PBO:0048514
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GDP dissociation inhibitor 2 pseudogene 1","termid":"PBO:0048514"}


id: PBO:0088251
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HAD superfamily hydrolase, unknown role","termid":"PBO:0088251"}


id: GO:0098714
data:
  {"annotated_genes":["SJAG_01406"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[101974],"is_not":false,"summary":null,"term":"GO:0098714"}]},"cv_name":"biological_process","definition":"The directed movement of malate from outside of a cell, across the plasma membrane and into the cytosol.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"malate transmembrane transport","termid":"GO:0071423"},{"relation_name":"is_a","term_name":"import across plasma membrane","termid":"GO:0098739"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01406":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0055085","GO:0051179"],"is_obsolete":false,"name":"malate import across plasma membrane","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0097405"],"synonyms":[{"name":"malate import into cell","type":"exact"}],"termid":"GO:0098714","terms_by_termid":{"GO:0098714":null}}


id: MOD:01134
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:306"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DeltaMass","termid":"MOD:00947"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fluorescein labelling of peptide N-terminal using NHS ester","termid":"MOD:01134"}


id: PBO:0085841
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and the nucleus; YDL129W is not an essential gene; relative distribution to the nucleus increases upon DNA replication stress","termid":"PBO:0085841"}


id: GO:0034604
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: pyruvate + CoA + NAD+ = acetyl-CoA + CO2 + NADH.","definition_xrefs":["ISBN:0201090910","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyruvate dehydrogenase [NAD(P)+] activity","termid":"GO:0034603"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"pyruvate dehydrogenase (NAD+) activity","secondary_identifiers":["MetaCyc:PYRUVDEH-RXN","KEGG_REACTION:R00209","EC:1.2.1.104","RHEA:28042"],"termid":"GO:0034604"}


id: GO:0097549
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of transcription by chromatin organization.","definition_xrefs":["GOC:di","PMID:23123093"],"gene_count":0,"genotype_count":0,"name":"obsolete chromatin organization involved in negative regulation of transcription (obsolete GO:0097549)","synonyms":[{"name":"negative regulation of gene-specific transcription from RNA polymerase II promoter by histone modification","type":"narrow"},{"name":"negative regulation of global transcription from Pol II promoter by histone modification","type":"narrow"},{"name":"negative regulation of transcription by chromatin organization","type":"exact"},{"name":"negative regulation of transcription from Pol II promoter by histone modification","type":"narrow"},{"name":"negative regulation of transcription from RNA polymerase II promoter by histone modification","type":"narrow"},{"name":"negative regulation of transcription from RNA polymerase II promoter, global by histone modification","type":"narrow"}],"termid":"GO:0097549"}


id: GO:0043047
data:
  {"annotated_genes":["SJAG_01677","SJAG_03855","SJAG_05214","SJAG_02362","SJAG_04245","SJAG_00939","SJAG_04863","SJAG_02194"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[63413,80567,80610,96389,108441,110702,111863],"is_not":false,"summary":null,"term":"GO:0043047"},{"annotations":[77219],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098505"}]},"cv_name":"molecular_function","definition":"Binding to single-stranded telomere-associated DNA.","definition_xrefs":["ISBN:0321000382","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"telomeric DNA binding","termid":"GO:0042162"},{"relation_name":"is_a","term_name":"sequence-specific single stranded DNA binding","termid":"GO:0098847"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00939":null,"SJAG_01677":null,"SJAG_02194":null,"SJAG_02362":null,"SJAG_03855":null,"SJAG_04245":null,"SJAG_04863":null,"SJAG_05214":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003677"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0003677"],"is_obsolete":false,"name":"single-stranded telomeric DNA binding","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"telomeric ssDNA binding","type":"exact"}],"termid":"GO:0043047","terms_by_termid":{"GO:0043047":null,"GO:0098505":null}}


id: MONDO:0010732
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Spastic paraparesis-deafness syndrome is a chronic neurodegenerative disorder characterized by spastic paraparesis (beginning at about 10 years of age) and hearing deficits.","definition_xrefs":["Orphanet:2815"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spastic paraparesis-deafness syndrome","secondary_identifiers":["SCTID:715504003","GARD:5555","ICD10CM:G11.4","UMLS:C2931291","MEDGEN:419037","DOID:0081100","MESH:C536692","OMIM:312910"],"synonyms":[{"name":"Wells-Jankovic syndrome","type":"exact"},{"name":"familial spastic paraparesis and deafness","type":"related"},{"name":"spastic paraparesis - deafness","type":"related"},{"name":"spastic paraparesis and deafness","type":"related"}],"termid":"MONDO:0010732","xrefs":{"Monarch":{"xref_id":"0010732"}}}


id: PR:O94462
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- puf3 gene.","definition_xrefs":["UniProtKB:O94462","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA-binding protein puf3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1687.22c","synonyms":[{"name":"Spom972h-puf3","type":"exact"},{"name":"pumilio homology domain family member 3 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94462"}


id: GO:1905756
data:
  {"annotated_genes":["SJAG_03048","SJAG_04597","SJAG_04666","SJAG_04776"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[102691],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905757"},{"annotations":[87850,94738,92743],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905758"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of primary cell septum biogenesis.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:27898700"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mitotic division septum assembly","termid":"GO:0140279"},{"relation_name":"regulates","term_name":"primary cell septum biogenesis","termid":"GO:0031671"}],"gene_count":4,"genes_by_uniquename":{"SJAG_03048":null,"SJAG_04597":null,"SJAG_04666":null,"SJAG_04776":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0000281"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0007049","GO:0044085","GO:0008150","GO:0000281"],"is_obsolete":false,"name":"regulation of primary cell septum biogenesis","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1905756","terms_by_termid":{"GO:1905757":null,"GO:1905758":null}}


id: GO:0003276
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any apoptotic process that contributes to the shaping of a heart valve.","definition_xrefs":["GOC:mtg_apoptosis","GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"apoptotic process involved in heart morphogenesis","termid":"GO:0003278"},{"relation_name":"part_of","term_name":"heart valve morphogenesis","termid":"GO:0003179"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"apoptotic process involved in heart valve morphogenesis","synonyms":[{"name":"apoptosis involved in heart valve morphogenesis","type":"narrow"}],"termid":"GO:0003276"}


id: GO:0039615
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=1 symmetry. The T=1 capsid is composed of 12 pentameric capsomeres.","definition_xrefs":["VZ:1057"],"direct_ancestors":[{"relation_name":"is_a","term_name":"icosahedral viral capsid","termid":"GO:0019030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"T=1 icosahedral viral capsid","termid":"GO:0039615"}


id: GO:0046142
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving coenzymes and prosthetic groups.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of coenzyme and prosthetic group metabolic process (obsolete GO:0046142)","synonyms":[{"name":"negative regulation of coenzyme and prosthetic group metabolic process","type":"exact"}],"termid":"GO:0046142"}


id: FYPO:0000914
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of glutamate-ammonia ligase (also known as glutamine synthetase) activity is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal catalytic activity","termid":"FYPO:0000660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000654","FYPO:0000257"],"is_obsolete":false,"name":"normal glutamate-ammonia ligase activity","synonyms":[{"name":"normal GS activity","type":"exact"},{"name":"normal glutamine synthetase activity","type":"exact"},{"name":"normal glutamylhydroxamic synthetase activity","type":"exact"}],"termid":"FYPO:0000914"}


id: MONDO:0012975
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal dominant nonsyndromic deafness in which the cause of the disease is a mutation in the GJB6 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant nonsyndromic hearing loss","termid":"MONDO:0019587"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0019497"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0019497"],"is_obsolete":false,"name":"autosomal dominant nonsyndromic hearing loss 3B","secondary_identifiers":["MESH:C567215","UMLS:C2675237","DOID:0110565","OMIM:612643","MEDGEN:436382","GARD:18130"],"synonyms":[{"name":"DFNA3B","type":"narrow"},{"name":"GJB6 autosomal dominant nonsyndromic deafness","type":"narrow"},{"name":"autosomal dominant deafness 3B","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness 3B","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness caused by mutation in GJB6","type":"narrow"},{"name":"autosomal dominant nonsyndromic deafness type 3B","type":"narrow"},{"name":"deafness, autosomal dominant 3B","type":"narrow"},{"name":"deafness, autosomal dominant 3b","type":"narrow"},{"name":"deafness, autosomal dominant type 3B","type":"narrow"}],"termid":"MONDO:0012975","xrefs":{"Monarch":{"xref_id":"0012975"}}}


id: PBO:0024821
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human GEN1","termid":"PBO:0024821"}


id: PBO:0065317
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine protease 40B (pseudogene)","termid":"PBO:0065317"}


id: MOD:00593
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative","definition_xrefs":["Unimod:273"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Unimod","termid":"MOD:00003"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"covalent modification of lysine by omega-maleimido alkanoyl N-hydroxysuccinimido esters","synonyms":[{"name":"Xlink:SSD","type":"related"},{"name":"covalent modification of lysine by cross-linking reagent","type":"related"}],"termid":"MOD:00593"}


id: PBO:0089290
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"But2 family protein But2, similar to cell surface molecules","termid":"PBO:0089290"}


id: PBO:0079639
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBE2Q2 pseudogene 10","termid":"PBO:0079639"}


id: PBO:0078966
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ser (AGA) 5-1","termid":"PBO:0078966"}


id: GO:0046180
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of ketogluconate, the anion of ketogluconic acid, an aldonic acid derived from glucose containing a ketonic carbonyl group.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ketogluconate metabolic process","termid":"GO:0019522"},{"relation_name":"is_a","term_name":"aldonic acid biosynthetic process","termid":"GO:0046175"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0044281","GO:0005975","GO:0008150"],"is_obsolete":false,"name":"ketogluconate biosynthetic process","synonyms":[{"name":"ketogluconate anabolism","type":"exact"},{"name":"ketogluconate biosynthesis","type":"exact"},{"name":"ketogluconate formation","type":"exact"},{"name":"ketogluconate synthesis","type":"exact"}],"termid":"GO:0046180"}


id: PBO:0084585
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Merged open reading frame; does not encode a discrete protein; YCR058C was originally annotated as an independent ORF, but as a result of sequence changes, it was merged with two other ORFs into a single reading frame, designated YCR057C","termid":"PBO:0084585"}


id: GO:0098799
data:
  {"annotated_genes":["SJAG_01929","SJAG_00948","SJAG_01951","SJAG_03502","SJAG_04996","SJAG_01305","SJAG_00569","SJAG_02355","SJAG_01780","SJAG_03416","SJAG_03515","SJAG_03345","SJAG_01134","SJAG_04370","SJAG_03710","SJAG_03415","SJAG_03358","SJAG_02361","SJAG_05259"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[116096,89572,105134],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036266"},{"annotations":[75104,80404,116941,70222,70306],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032865"},{"annotations":[110734,112120],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140595"},{"annotations":[70827,63846,91218,106501,99746,79461],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005742"},{"annotations":[90694,70305,62057,73723],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001401"}]},"cv_name":"cellular_component","definition":"Any protein complex that is part of the outer mitochondrial membrane.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane protein complex","termid":"GO:0098796"},{"relation_name":"is_a","term_name":"mitochondrial protein-containing complex","termid":"GO:0098798"},{"relation_name":"part_of","term_name":"mitochondrial outer membrane","termid":"GO:0005741"}],"gene_count":19,"genes_by_uniquename":{"SJAG_00569":null,"SJAG_00948":null,"SJAG_01134":null,"SJAG_01305":null,"SJAG_01780":null,"SJAG_01929":null,"SJAG_01951":null,"SJAG_02355":null,"SJAG_02361":null,"SJAG_03345":null,"SJAG_03358":null,"SJAG_03415":null,"SJAG_03416":null,"SJAG_03502":null,"SJAG_03515":null,"SJAG_03710":null,"SJAG_04370":null,"SJAG_04996":null,"SJAG_05259":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005739"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005739","GO:0005575","GO:0032991","GO:0005737"],"is_obsolete":false,"name":"outer mitochondrial membrane protein complex","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0098799","terms_by_termid":{"GO:0001401":null,"GO:0005742":null,"GO:0032865":null,"GO:0036266":null,"GO:0140595":null}}


id: GO:1905478
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of glutamate-ammonia ligase activity.","definition_xrefs":["GO_REF:0000059","PMID:10377385","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of glutamate-ammonia ligase activity (obsolete GO:1905478)","synonyms":[{"name":"regulation of L-glutamate:ammonia ligase (ADP-forming)","type":"exact"},{"name":"regulation of L-glutamine synthetase activity","type":"exact"},{"name":"regulation of glutamine synthetase activity","type":"exact"},{"name":"regulation of glutamylhydroxamic synthetase activity","type":"exact"}],"termid":"GO:1905478"}


id: PBO:0081416
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 271, pseudogene","termid":"PBO:0081416"}


id: GO:0047015
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: NAD+ + 2-methyl-3-hydroxybutyryl-CoA = NADH + H+ + 2-methylaceto-acetyl-CoA.","definition_xrefs":["MetaCyc:1.1.1.178-RXN","EC:1.1.1.178"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"3-hydroxy-2-methylbutyryl-CoA dehydrogenase activity","secondary_identifiers":["RHEA:13281"],"synonyms":[{"name":"(2S,3S)-3-hydroxy-2-methylbutanoyl-CoA:NAD+ oxidoreductase activity","type":"related"},{"name":"2-methyl-3-hydroxy-butyryl CoA dehydrogenase activity","type":"related"},{"name":"2-methyl-3-hydroxybutyryl coenzyme A dehydrogenase activity","type":"related"},{"name":"2-methyl-3-hydroxybutyryl-CoA dehydrogenase activity","type":"related"}],"termid":"GO:0047015"}


id: SO:0000701
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region of sequence where the validity of the base calling is questionable.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sequence_difference","termid":"SO:0000413"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"possible_base_call_error","synonyms":[{"name":"possible base call error","type":"exact"}],"termid":"SO:0000701"}


id: GO:0071544
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a diphosphoinositol polyphosphate, 1,2,3,4,5,6-cyclohexanehexol with one or more diphosphate groups and multiple monophosphate groups attached.","definition_xrefs":["PMID:12387729","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diphosphoinositol polyphosphate metabolic process","termid":"GO:0071543"},{"relation_name":"is_a","term_name":"inositol phosphate catabolic process","termid":"GO:0071545"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"diphosphoinositol polyphosphate catabolic process","synonyms":[{"name":"diphosphoinositol polyphosphate breakdown","type":"exact"},{"name":"diphosphoinositol polyphosphate catabolism","type":"exact"},{"name":"diphosphoinositol polyphosphate degradation","type":"exact"}],"termid":"GO:0071544"}


id: PBO:0003816
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCAAT-binding factor complex subunit Php4","termid":"PBO:0003816"}


id: GO:1902155
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of response to G1 DNA damage checkpoint signaling.","definition_xrefs":["GOC:mtg_cell_cycle","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to DNA damage checkpoint signaling","termid":"GO:1902153"},{"relation_name":"regulates","term_name":"response to G1 DNA damage checkpoint signaling","termid":"GO:0072432"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of response to G1 DNA damage checkpoint signaling","synonyms":[{"name":"regulation of mitotic cell cycle G1/S transition DNA damage checkpoint effector process","type":"exact"},{"name":"regulation of response to mitotic cell cycle G1/S transition DNA damage checkpoint signaling","type":"exact"},{"name":"regulation of response to signal involved in mitotic cell cycle G1/S transition DNA damage checkpoint","type":"exact"}],"termid":"GO:1902155"}


id: PBO:0070407
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"replication protein A2 pseudogene 1","termid":"PBO:0070407"}


id: GO:0016426
data:
  {"annotated_genes":["SJAG_02386","SJAG_02637"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[112483,62043],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0160107"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing methyladenine.","definition_xrefs":["GOC:go-curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA methyltransferase activity","termid":"GO:0008175"},{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02386":null,"SJAG_02637":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"}],"interesting_parent_ids":["GO:0003824","GO:0016741","GO:0003674","GO:0016740","GO:0140101","GO:0140098"],"is_obsolete":false,"name":"tRNA (adenine) methyltransferase activity","references_by_uniquename":{"GO_REF:0000003":null,"GO_REF:0000107":null},"synonyms":[{"name":"tRNA (adenine-C2-)-methyltransferase activity","type":"broad"}],"termid":"GO:0016426","terms_by_termid":{"GO:0160107":null}}


id: PBO:0058229
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4519","termid":"PBO:0058229"}


id: SOFP:score
data:
  {"annotation_feature_type":"gene","cv_name":"feature_property","definition":"A GFF3 score","definition_xrefs":["so:sjc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"feature_property","termid":"SOFP:feature_property"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"score","termid":"SOFP:score"}


id: PR:O60163
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A lysine-sensitive aspartokinase 3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03819"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aspartokinase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC19F5.04","secondary_identifiers":["UniProtKB:O60163"],"synonyms":[{"name":"Spom972h-lysC","type":"exact"},{"name":"aspartate kinase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O60163"}


id: GO:0000137
data:
  {"annotated_genes":["SJAG_01276","SJAG_04112","SJAG_01025","SJAG_00816","SJAG_03555","SJAG_04095","SJAG_04770"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[76130,96372],"is_not":false,"summary":null,"term":"GO:0000137"},{"annotations":[70290],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000136"},{"annotations":[105274,87817,118381,98208],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0140497"}]},"cv_name":"cellular_component","definition":"The Golgi cisterna closest to the endoplasmic reticulum; the first processing compartment through which proteins pass after export from the ER.","definition_xrefs":["ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Golgi cisterna","termid":"GO:0031985"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00816":null,"SJAG_01025":null,"SJAG_01276":null,"SJAG_03555":null,"SJAG_04095":null,"SJAG_04112":null,"SJAG_04770":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005794"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0005794"],"is_obsolete":false,"name":"Golgi cis cisterna","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"Golgi apparatus cis cisterna","type":"exact"}],"termid":"GO:0000137","terms_by_termid":{"GO:0000136":null,"GO:0000137":null,"GO:0140497":null}}


id: GO:0099032
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the postsynaptic early endosome membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.","definition_xrefs":["GOC:dos"],"gene_count":0,"genotype_count":0,"name":"obsolete anchored component of postsynaptic early endosome membrane (obsolete GO:0099032)","termid":"GO:0099032"}


id: GO:0031782
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type 4 melanocortin receptor.","definition_xrefs":["GOC:nln","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"melanocortin receptor binding","termid":"GO:0031779"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"type 4 melanocortin receptor binding","synonyms":[{"name":"type 4 melanocortin receptor ligand","type":"narrow"}],"termid":"GO:0031782"}


id: GO:0010895
data:
  {"annotated_genes":["SJAG_02104"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94206],"is_not":false,"summary":null,"term":"GO:0010895"}]},"cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of ergosterol.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of ergosterol biosynthetic process","termid":"GO:0032443"},{"relation_name":"is_a","term_name":"negative regulation of sterol biosynthetic process","termid":"GO:0106119"},{"relation_name":"is_a","term_name":"negative regulation of alcohol biosynthetic process","termid":"GO:1902931"},{"relation_name":"negatively_regulates","term_name":"ergosterol biosynthetic process","termid":"GO:0006696"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02104":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0006629","GO:0008150"],"is_obsolete":false,"name":"negative regulation of ergosterol biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0010895","terms_by_termid":{"GO:0010895":null}}


id: GO:0047995
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-(4-hydroxyphenyl)lactate + NAD+ = 3-(4-hydroxyphenyl)pyruvate + NADH.","definition_xrefs":["RHEA:10780"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"hydroxyphenylpyruvate reductase activity","secondary_identifiers":["MetaCyc:HYDROXYPHENYLPYRUVATE-REDUCTASE-RXN","EC:1.1.1.237"],"synonyms":[{"name":"4-hydroxyphenyllactate:NAD+ oxidoreductase activity","type":"related"},{"name":"HPRP","type":"related"}],"termid":"GO:0047995"}


id: MONDO:0004348
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"retinal vascular disorder","termid":"MONDO:0002311"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"retinal telangiectasia","secondary_identifiers":["ICD9:362.15","HP:0007763","MEDGEN:57598","DOID:7736","UMLS:C0154835","SCTID:84884003"],"termid":"MONDO:0004348","xrefs":{"Monarch":{"xref_id":"0004348"}}}


id: PR:O14360
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An H/ACA ribonucleoprotein complex non-core subunit NAF1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03547"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H/ACA ribonucleoprotein complex non-core subunit NAF1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC30D10.15","secondary_identifiers":["UniProtKB:O14360"],"synonyms":[{"name":"Spom972h-NAF1","type":"exact"},{"name":"nuclear assembly factor 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14360"}


id: PBO:0005059
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dihydrolipoamide S-acetyltransferase E2, Lat1 (predicted)","termid":"PBO:0005059"}


id: GO:0072284
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the metanephric S-shaped body is generated and organized. The metanephric S-shaped body is the successor of the metanephric comma-shaped body that contributes to the morphogenesis of a nephron in the metanephros.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-shaped body morphogenesis","termid":"GO:0072050"},{"relation_name":"part_of","term_name":"metanephric nephron morphogenesis","termid":"GO:0072273"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric S-shaped body morphogenesis","termid":"GO:0072284"}


id: MONDO:0011518
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Wiedemann-Steiner syndrome is a rare genetic condition characterized by distinctive facial features, hairy elbows, short stature, and intellectual disability. This condition is caused by changes (mutations) in the KMT2A gene (also known as the MLL gene). It is inherited in an autosomal dominant manner. Most cases result from new (de novo) mutations that occur only in an egg or sperm cell, or just after conception. Treatment is symptomatic and supportive and may include special education classes and speech and occupational therapies aimed at increasing motor functioning and language.","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Wiedemann-Steiner syndrome","secondary_identifiers":["NORD:150898","GARD:5565","MEDGEN:340266","MESH:C536704","OMIM:605130","Orphanet:319182","UMLS:C1854630"],"synonyms":[{"name":"A syndrome of abnormal facies, short stature, and psychomotor retardation","type":"related"},{"name":"WDSTS","type":"related"},{"name":"Wiedemann Grosse Dibbern syndrome","type":"related"},{"name":"Wiedemann-Steiner syndrome","type":"exact"},{"name":"hairy elbows, short stature, Facial Dysmorphism, and developmental delay","type":"related"},{"name":"hypertrichosis-short stature-facial dysmorphism-developmental delay syndrome","type":"exact"}],"termid":"MONDO:0011518","xrefs":{"Monarch":{"xref_id":"0011518"}}}


id: PBO:0038949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adipogenin","termid":"PBO:0038949"}


id: PBO:0042491
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cadherin 12 pseudogene 4","termid":"PBO:0042491"}


id: PBO:0048048
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"formimidoyltransferase cyclodeaminase","termid":"PBO:0048048"}


id: GO:0060493
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that mediates the transfer of information from a mesenchymal cell to an endodermal cell in the foregut and contributes to the formation of the lung bud.","definition_xrefs":["GOC:mtg_lung","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inductive mesenchymal-endodermal cell signaling","termid":"GO:0060494"},{"relation_name":"is_a","term_name":"mesenchymal-epithelial cell signaling involved in lung development","termid":"GO:0060496"},{"relation_name":"is_a","term_name":"mesenchymal-endodermal cell signaling","termid":"GO:0060497"},{"relation_name":"part_of","term_name":"lung induction","termid":"GO:0060492"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"mesenchymal-endodermal cell signaling involved in lung induction","synonyms":[{"name":"mesenchymal-endodermal cell signalling involved in lung induction","type":"exact"}],"termid":"GO:0060493"}


id: PBO:0068959
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 203, pseudogene","termid":"PBO:0068959"}


id: PBO:0027896
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_siRNA_level","termid":"PBO:0027896"}


id: PBO:0063036
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"p21 (RAC1) activated kinase 3","termid":"PBO:0063036"}


id: PBO:0054411
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1807","termid":"PBO:0054411"}


id: FYPO:0001418
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the size, shape, or structure of the microtubule cytoskeleton is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cytoskeleton morphology during vegetative growth","termid":"FYPO:0000352"},{"relation_name":"is_a","term_name":"abnormal microtubule cytoskeleton morphology","termid":"FYPO:0003064"},{"relation_name":"is_a","term_name":"abnormal microtubule cytoskeleton during vegetative growth","termid":"FYPO:0004315"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0002399","FYPO:0000054"],"is_obsolete":false,"name":"abnormal microtubule cytoskeleton morphology during vegetative growth","synonyms":[{"name":"abnormal microtubule cytoskeleton morphology during mitotic cell cycle","type":"related"}],"termid":"FYPO:0001418"}


id: MONDO:0012878
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Cowden disease in which the cause of the disease is a mutation in the SDHB gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Cowden disease","termid":"MONDO:0016063"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0005093"],"is_obsolete":false,"name":"Cowden syndrome 2","secondary_identifiers":["MESH:C567337","OMIM:612359"],"synonyms":[{"name":"CWS2","type":"related"},{"name":"Cowden disease caused by mutation in SDHB","type":"exact"},{"name":"Cowden syndrome 2","type":"exact"},{"name":"Cowden syndrome type 2","type":"exact"},{"name":"SDHB Cowden disease","type":"exact"}],"termid":"MONDO:0012878","xrefs":{"Monarch":{"xref_id":"0012878"}}}


id: MONDO:0019773
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Myelomeningocele is the most severe form of spina bifida. It happens when parts of the spinal cord and nerves come through the open part of the spine. It causes nerve damage and other disabilities. Seventy to ninety percent of children with this condition also have too much fluid on their brains (hydrocephalus). This happens because fluid that protects the brain and spinal cord is unable to drain like it should. The fluid builds up, causing pressure and swelling. Without treatment, a persons head grows too big, and theymay have brain damage. Other disorders of the spinal cord may be seen, including syringomyelia and hip dislocation. The cause of myelomeningocele is unknown. However, low levels of folic acid in a woman's body before and during early pregnancy is thought to play a part in this type of birth defect.","direct_ancestors":[{"relation_name":"is_a","term_name":"spina bifida cystica","termid":"MONDO:0017069"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"myelomeningocele","secondary_identifiers":["Orphanet:93969","icd11.foundation:1200528084","NANDO:2100215","SCTID:414667000","NANDO:1200509","GARD:3475","UMLS:C0025312","MEDGEN:7538","MESH:D008591","SCTID:203994003","DOID:0060326","NANDO:2200814","HP:0002475"],"synonyms":[{"name":"meningomyelocele","type":"related"}],"termid":"MONDO:0019773","xrefs":{"Monarch":{"xref_id":"0019773"}}}


id: PBO:0070771
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L12 pseudogene 1","termid":"PBO:0070771"}


id: GO:1905907
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of amyloid fibril formation.","definition_xrefs":["GO_REF:0000058","PMID:23106396","GOC:TermGenie","GOC:bc","GOC:aruk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein metabolic process","termid":"GO:0051248"},{"relation_name":"is_a","term_name":"negative regulation of supramolecular fiber organization","termid":"GO:1902904"},{"relation_name":"is_a","term_name":"regulation of amyloid fibril formation","termid":"GO:1905906"},{"relation_name":"negatively_regulates","term_name":"amyloid fibril formation","termid":"GO:1990000"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of amyloid fibril formation","synonyms":[{"name":"down regulation of amyloid fibril assembly","type":"related"},{"name":"down regulation of amyloid fibril formation","type":"exact"},{"name":"down regulation of amyloid structure assembly","type":"related"},{"name":"down regulation of amyloid structure formation","type":"related"},{"name":"down-regulation of amyloid fibril assembly","type":"related"},{"name":"down-regulation of amyloid fibril formation","type":"exact"},{"name":"down-regulation of amyloid structure assembly","type":"related"},{"name":"down-regulation of amyloid structure formation","type":"related"},{"name":"downregulation of amyloid fibril assembly","type":"related"},{"name":"downregulation of amyloid fibril formation","type":"exact"},{"name":"downregulation of amyloid structure assembly","type":"related"},{"name":"downregulation of amyloid structure formation","type":"related"},{"name":"inhibition of amyloid fibril assembly","type":"related"},{"name":"inhibition of amyloid fibril formation","type":"narrow"},{"name":"inhibition of amyloid structure assembly","type":"related"},{"name":"inhibition of amyloid structure formation","type":"related"},{"name":"negative regulation of amyloid fibril assembly","type":"related"},{"name":"negative regulation of amyloid structure assembly","type":"related"},{"name":"negative regulation of amyloid structure formation","type":"related"}],"termid":"GO:1905907"}


id: PBO:0042192
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin D2 pseudogene 1","termid":"PBO:0042192"}


id: GO:0050692
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a protein's DNA binding domain (DBD).","definition_xrefs":["PMID:9682036"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"DNA binding domain binding","synonyms":[{"name":"DBD binding","type":"exact"}],"termid":"GO:0050692"}


id: PBO:0064309
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteolipid protein 1","termid":"PBO:0064309"}


id: PBO:0076363
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SZT2 antisense RNA 1","termid":"PBO:0076363"}


id: PBO:0069020
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 264, pseudogene","termid":"PBO:0069020"}


id: GO:0040025
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the egg-laying organ of female and hermaphrodite nematodes over time, from its formation to the mature structure. In nematodes, the vulva is formed from ventral epidermal cells during larval stages to give rise to a fully formed vulva in the adult.","definition_xrefs":["GOC:ems","GOC:kmv","ISBN:087969307X"],"direct_ancestors":[{"relation_name":"is_a","term_name":"animal organ development","termid":"GO:0048513"},{"relation_name":"part_of","term_name":"nematode larval development","termid":"GO:0002119"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"vulval development","termid":"GO:0040025"}


id: SO:0000926
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An edit to insert a CU dinucleotide.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000926 insert_CU (obsolete SO:0000926)","synonyms":[{"name":"insert CU","type":"exact"}],"termid":"SO:0000926"}


id: GO:0007598
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A protein activation cascade that contributes to blood coagulation and consists of the self-limited process linking exposure and activation of tissue factor to the activation of clotting factor X.","definition_xrefs":["GOC:pde","GOC:add","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein activation cascade","termid":"GO:0072376"},{"relation_name":"part_of","term_name":"blood coagulation, fibrin clot formation","termid":"GO:0072378"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051604"},{"rel_name":"part_of","termid":"GO:0051604"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0051604"],"is_obsolete":false,"name":"blood coagulation, extrinsic pathway","secondary_identifiers":["Reactome:R-HSA-140834"],"termid":"GO:0007598"}


id: PBO:0045894
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 gamma pseudogene 6","termid":"PBO:0045894"}


id: FYPO:0006473
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription of amino acid biosynthesis genes from RNA polymerase II promoters occurs to a lower extent than normal in response to starvation for one or more amino acids. Amino acid biosynthesis genes are those whose products are involved in amino acid biosynthetic processes.","definition_xrefs":["PMID:29432178","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased transcription of amino acid biosynthesis genes","termid":"FYPO:0006443"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000294"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0000294"],"is_obsolete":false,"name":"decreased transcription of amino acid biosynthesis genes in response to amino acid starvation","synonyms":[{"name":"decreased transcription of amino acid biosynthesis genes during cellular response to amino acid starvation","type":"exact"},{"name":"decreased transcription of amino acid biosynthesis genes from RNA pol II promoter in response to amino acid starvation","type":"exact"},{"name":"decreased transcription of amino acid biosynthesis genes in response to amino acid starvation during mitotic cell cycle","type":"related"},{"name":"decreased transcription of amino acid biosynthesis genes in response to amino acid starvation during vegetative growth","type":"exact"},{"name":"reduced transcription of amino acid biosynthesis genes in response to amino acid starvation","type":"exact"}],"termid":"FYPO:0006473"}


id: MONDO:0013224
data:
  {"annotated_genes":["SJAG_05313","SJAG_04755"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87649,87650],"is_not":false,"summary":null,"term":"MONDO:0013224"}]},"cv_name":"mondo","definition":"Any familial rhabdoid tumor in which the cause of the disease is a mutation in the SMARCA4 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial rhabdoid tumor","termid":"MONDO:0016473"},{"relation_name":"is_a","term_name":"atypical teratoid rhabdoid tumor","termid":"MONDO:0020560"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04755":null,"SJAG_05313":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"rhabdoid tumor predisposition syndrome 2","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C2750074","MEDGEN:413749","MESH:C567643","NCIT:C178394","GARD:18319","OMIM:613325"],"synonyms":[{"name":"RTPS2","type":"related"},{"name":"SMARCA4 familial rhabdoid tumor","type":"exact"},{"name":"SMARCA4 familial rhabdoid tumour","type":"exact"},{"name":"familial rhabdoid tumor caused by mutation in SMARCA4","type":"exact"},{"name":"familial rhabdoid tumour caused by mutation in SMARCA4","type":"exact"},{"name":"rhabdoid tumor predisposition syndrome 2","type":"exact"},{"name":"rhabdoid tumor predisposition syndrome type 2","type":"exact"},{"name":"rhabdoid tumour predisposition syndrome type 2","type":"exact"}],"termid":"MONDO:0013224","terms_by_termid":{"MONDO:0013224":null},"xrefs":{"Monarch":{"xref_id":"0013224"}}}


id: MONDO:0000671
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An agnosia characterized by an inability to distinguish, name, or recognize the fingers","definition_xrefs":["Wikipedia:Finger_agnosia"],"direct_ancestors":[{"relation_name":"is_a","term_name":"agnosia","termid":"MONDO:0005638"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"finger agnosia","secondary_identifiers":["DOID:0060141","MEDGEN:115960","HP:0010525","UMLS:C0234509"],"synonyms":[{"name":"finger agnosia","type":"exact"},{"name":"finger agnosia (disease)","type":"exact"},{"name":"manual digit agnosia","type":"exact"}],"termid":"MONDO:0000671","xrefs":{"Monarch":{"xref_id":"0000671"}}}


id: PBO:0059350
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein S15 pseudogene 1","termid":"PBO:0059350"}


id: PBO:0040464
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase 13A5","termid":"PBO:0040464"}


id: PBO:0043713
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 6B1 pseudogene 1","termid":"PBO:0043713"}


id: PBO:0052350
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin family member 3C","termid":"PBO:0052350"}


id: GO:0080126
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the ovary septum over time, from its formation to the mature structure. The ovary septum is the thin partition that divides the ovary, the basal portion of a carpel or group of fused carpels, that encloses the ovule(s).","definition_xrefs":["PMID:17855426"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"plant septum development","termid":"GO:1905328"},{"relation_name":"part_of","term_name":"plant-type ovary development","termid":"GO:0035670"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ovary septum development","termid":"GO:0080126"}


id: MONDO:0013362
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"THOC6-related developmental delay-microcephaly-facial dysmorphism syndrome","secondary_identifiers":["Orphanet:363444","UMLS:C3150939","GARD:17558","OMIM:613680","MEDGEN:462289"],"synonyms":[{"name":"BBIS","type":"exact"},{"name":"BEAULIEU-BOYCOTT-Innes syndrome","type":"related"},{"name":"Beaulieu-Boycott-Innes syndrome","type":"exact"},{"name":"microcephaly, intellectual disability, and distinctive facies, with Cardiac and genitourinary malformations","type":"related"},{"name":"microcephaly, mental retardation, and distinctive facies, with Cardiac and genitourinary malformations","type":"related"}],"termid":"MONDO:0013362","xrefs":{"Monarch":{"xref_id":"0013362"}}}


id: PBO:0031335
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_bleomycin","termid":"PBO:0031335"}


id: MONDO:0006562
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete incontinentia pigmenti achromians (obsolete MONDO:0006562)","secondary_identifiers":["MESH:D010859","NCIT:C7582","SCTID:218358001"],"synonyms":[{"name":"incontinentia pigmenti achromians syndrome","type":"exact"},{"name":"incontinentia pigmenti syndrome","type":"related"}],"termid":"MONDO:0006562","xrefs":{"Monarch":{"xref_id":"0006562"}}}


id: MONDO:0005497
data:
  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disease involving the bone development.","definition_xrefs":["MONDO:patterns/location_top"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bone disorder","termid":"MONDO:0005381"},{"relation_name":"is_a","term_name":"disorder of development or 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id: PBO:0073037
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SCUBE1 antisense RNA 1","termid":"PBO:0073037"}


id: PBO:0060988
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuroblastoma highly expressed DDX5 stabilizing lncRNA 1","termid":"PBO:0060988"}


id: FYPO:0004669
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to ferrozine. Cells stop growing (and may die) at a concentration of ferrozine that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000003","FYPO:0002683","FYPO:0005447","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to ferrozine","synonyms":[{"name":"hypersensitive to ferrozine","type":"exact"},{"name":"sensitive to ferrozine during mitotic cell cycle","type":"related"},{"name":"sensitive to ferrozine during vegetative growth","type":"exact"},{"name":"sensitive to ferrozine(2-)","type":"exact"}],"termid":"FYPO:0004669"}


id: PBO:0051058
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy diversity 3-10","termid":"PBO:0051058"}


id: PBO:0058737
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6862-1","termid":"PBO:0058737"}


id: PBO:0062612
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 10 subfamily U member 1 pseudogene","termid":"PBO:0062612"}


id: PBO:0079391
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin beta 4A class IVa","termid":"PBO:0079391"}


id: GO:1902853
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of nuclear migration during mitotic telophase.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:23087209"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of nuclear migration along microtubule","termid":"GO:1902839"},{"relation_name":"is_a","term_name":"regulation of nuclear migration during mitotic telophase","termid":"GO:1902852"},{"relation_name":"negatively_regulates","term_name":"nuclear migration during mitotic telophase","termid":"GO:0090561"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"negative regulation of nuclear migration during mitotic telophase","synonyms":[{"name":"down regulation of nuclear migration during mitotic telophase","type":"exact"},{"name":"down-regulation of nuclear migration during mitotic telophase","type":"exact"},{"name":"downregulation of nuclear migration during mitotic telophase","type":"exact"},{"name":"inhibition of nuclear migration during mitotic telophase","type":"narrow"}],"termid":"GO:1902853"}


id: MONDO:0014688
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An asphyxiating thoracic dystrophy that has material basis in homozygous mutation in the KIAA0586 gene on chromosome 14q23.","definition_xrefs":["PMID:26166481","DOID:0110096"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Joubert syndrome with Jeune asphyxiating thoracic dystrophy","termid":"MONDO:0018342"},{"relation_name":"is_a","term_name":"Jeune syndrome","termid":"MONDO:0018770"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0005240","MONDO:0006025"],"is_obsolete":false,"name":"short-rib thoracic dysplasia 14 with polydactyly","secondary_identifiers":["MEDGEN:901479","OMIM:616546","UMLS:C4225286","GARD:18467"],"synonyms":[{"name":"SRTD14","type":"exact"},{"name":"short-rib thoracic dysplasia 14 with polydactyly","type":"exact"}],"termid":"MONDO:0014688","xrefs":{"Monarch":{"xref_id":"0014688"}}}


id: PBO:0087538
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of protein N-terminal acetyltransferase NatA; NatA is comprised of Nat1p, Ard1p, and Nat5p; N-terminally acetylates many proteins, which influences multiple processes such as the cell cycle, heat-shock resistance, mating, sporulation, and telomeric silencing","termid":"PBO:0087538"}


id: MONDO:0020364
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Posterior polymorphous corneal dystrophy (PPCD) is a rare mild subtype of posterior corneal dystrophy characterized by small aggregates of apparent vesicles bordered by a gray haze at the level of Descemet membrane, generally with no effect on vision.","definition_xrefs":["Orphanet:98973"],"direct_ancestors":[{"relation_name":"is_a","term_name":"corneal endothelial dystrophy","termid":"MONDO:0000766"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"posterior corneal dystrophy","termid":"MONDO:0020214"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"posterior polymorphous corneal dystrophy","secondary_identifiers":["OMIMPS:122000","icd11.foundation:935421185","UMLS:C0339284","DOID:0060457","GARD:16882","MEDGEN:87382"],"synonyms":[{"name":"PPCD","type":"exact"},{"name":"Schlichting dystrophy","type":"exact"},{"name":"corneal dystrophy, posterior polymorphous","type":"exact"},{"name":"hereditary polymorphus posterior corneal dystrophy","type":"exact"},{"name":"posterior polymorphous dystrophy","type":"exact"}],"termid":"MONDO:0020364","xrefs":{"Monarch":{"xref_id":"0020364"}}}


id: GO:0102235
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1-penten-3-one + NADPH + H+ = 1-pentan-3-one + NADP.","definition_xrefs":["GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","termid":"GO:0016628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"1-penten-3-one reductase activity","secondary_identifiers":["MetaCyc:RXN-12295"],"termid":"GO:0102235"}


id: GO:2000064
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id: MONDO:0014397
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  {"annotated_genes":["SJAG_02428"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86599],"is_not":false,"summary":null,"term":"MONDO:0014397"}]},"cv_name":"mondo","definition":"Any combined oxidative phosphorylation deficiency in which the cause of the disease is a mutation in the VARS2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"combined oxidative phosphorylation deficiency","termid":"MONDO:0000732"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02428":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0004069","MONDO:0005066"],"is_obsolete":false,"name":"combined oxidative phosphorylation defect type 20","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C4014660","Orphanet:420728","GARD:17699","OMIM:615917","MEDGEN:863097","DOID:0111478"],"synonyms":[{"name":"COXPD20","type":"exact"},{"name":"VARS2 combined oxidative phosphorylation deficiency","type":"exact"},{"name":"combined oxidative phosphorylation deficiency 20","type":"related"},{"name":"combined oxidative phosphorylation deficiency caused by mutation in VARS2","type":"exact"},{"name":"combined oxidative phosphorylation deficiency type 20","type":"exact"}],"termid":"MONDO:0014397","terms_by_termid":{"MONDO:0014397":null},"xrefs":{"Monarch":{"xref_id":"0014397"}}}


id: PBO:0049726
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HAUS augmin like complex subunit 7","termid":"PBO:0049726"}


id: PBO:0066881
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 181","termid":"PBO:0066881"}


id: MONDO:0007465
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"distichiasis with congenital anomalies of the heart and peripheral vasculature","secondary_identifiers":["OMIM:126320","MESH:C565092","Orphanet:1683","MEDGEN:338862","UMLS:C1852062"],"synonyms":[{"name":"distichiasis with congenital anomalies of the heart and peripheral vasculature","type":"exact"},{"name":"distichiasis-congenital heart defects-peripheral vascular anomalies syndrome","type":"exact"}],"termid":"MONDO:0007465","xrefs":{"Monarch":{"xref_id":"0007465"}}}


id: PBO:0077017
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thrombospondin 4","termid":"PBO:0077017"}


id: PBO:0052968
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-2-hydroxyglutarate dehydrogenase","termid":"PBO:0052968"}


id: PBO:0040019
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"armadillo repeat containing 8","termid":"PBO:0040019"}


id: PBO:0073097
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"succinate dehydrogenase complex subunit D pseudogene 1","termid":"PBO:0073097"}


id: FYPO:0003018
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cell morphology phenotype in which a vegetative cell is inviable and elongated during a cellular response to non-ionic osmotic stress.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete inviable elongated vegetative cell during cellular response to non-ionic osmotic stress (obsolete FYPO:0003018)","synonyms":[{"name":"elongated inviable cell during cellular response to non-ionic osmotic stress during vegetative growth","type":"exact"},{"name":"elongated inviable vegetative cell during cellular response to non-ionic osmotic stress","type":"exact"},{"name":"inviable elongated vegetative cell during cellular response to non-ionic osmotic stress during mitotic cell cycle","type":"related"},{"name":"lethal; elongated vegetative cell during cellular response to non-ionic osmotic stress","type":"exact"}],"termid":"FYPO:0003018"}


id: MONDO:0008132
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Leber plus disease","termid":"MONDO:0020478"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004069"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004069"],"is_obsolete":false,"name":"optic atrophy with demyelinating disease of CNS","secondary_identifiers":["MEDGEN:322290","OMIM:165200","GARD:15098","MESH:C563496","UMLS:C1833830","DOID:0111756"],"synonyms":[{"name":"optic atrophy with demyelinating disease of CNS","type":"exact"}],"termid":"MONDO:0008132","xrefs":{"Monarch":{"xref_id":"0008132"}}}


id: PBO:0085569
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein homologous to Chediak-Higashi syndrome and Beige proteins; both of which are implicated in disease syndromes in human and mouse, respectively, due to defective lysosomal trafficking; mutant phenotype and genetic interactions suggest a role in protein sorting","termid":"PBO:0085569"}


id: PBO:0000778
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4.2.99.18","termid":"PBO:0000778"}


id: FYPO:0003440
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An inviable phenotype observed in the vegetative growth phase of the life cycle in which a cell lyses, i.e. the plasma membrane ruptures and cytoplasm is lost, during cytokinesis. Note that in fission yeast cell lysis, the integrity of the cell wall is also compromised.","definition_xrefs":["PMID:24798735","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vegetative cell lysis","termid":"FYPO:0000647"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000004","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"cell lysis during cytokinesis","synonyms":[{"name":"cell lysis during cytokinesis during mitotic cell cycle","type":"related"},{"name":"cell lysis during cytokinesis during vegetative growth","type":"exact"},{"name":"cytolysis during cytokinesis","type":"exact"},{"name":"inviable, lysed cell during cytokinesis","type":"exact"}],"termid":"FYPO:0003440"}


id: FYPO:0000660
data:
  {"alleles_by_uniquename":{"SJAG_01458:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01458","name":"acb1delta","uniquename":"SJAG_01458:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[119952],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000719"}]},"cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate and other catalytic properties of a specified catalytic activity are normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic activity phenotype","termid":"FYPO:0000654"},{"relation_name":"is_a","term_name":"normal molecular function","termid":"FYPO:0000706"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01458":null},"genotype_count":1,"genotypes_by_uniquename":{"acb1delta":{"display_name":"acb1delta","display_uniquename":"acb1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01458:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000654","FYPO:0000652"],"is_obsolete":false,"name":"normal catalytic activity","references_by_uniquename":{"PMID:31956022":null},"single_locus_annotated_genes":["SJAG_01458"],"single_locus_genotype_uniquenames":["acb1delta"],"termid":"FYPO:0000660","terms_by_termid":{"FYECO:0000126":null,"FYPO:0000719":null}}


id: GO:0010265
data:
  {"annotated_genes":["SJAG_05297"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72167],"is_not":false,"summary":null,"term":"GO:0010265"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form the SKP1-Cullin/Cdc53-F-box protein ubiquitin ligase (SCF) complex.","definition_xrefs":["GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"}],"gene_count":1,"genes_by_uniquename":{"SJAG_05297":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0065003","GO:0044085"],"is_obsolete":false,"name":"SCF complex assembly","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0010265","terms_by_termid":{"GO:0010265":null}}


id: PBO:0079510
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin reductase 1","termid":"PBO:0079510"}


id: FYPO:0002522
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A transport phenotype observed in the vegetative growth phase of the life cycle in which the export of polyadenylated mRNA from the nucleus is decreased. Export of all polyadenylated mRNAs or a specific mRNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_output","term_name":"increased nuclear polyadenylated mRNA level during vegetative growth","termid":"FYPO:0003119"},{"relation_name":"is_a","term_name":"abnormal poly(A)+ mRNA export from nucleus","termid":"FYPO:0000183"},{"relation_name":"is_a","term_name":"decreased nuclear export","termid":"FYPO:0000508"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000138","FYPO:0005447","FYPO:0001985","FYPO:0006551","FYPO:0000002"],"is_obsolete":false,"name":"decreased poly(A)+ mRNA export from nucleus","synonyms":[{"name":"decreased poly(A)+ mRNA export from nucleus during mitotic cell cycle","type":"related"},{"name":"decreased poly(A)+ mRNA export from nucleus during vegetative growth","type":"exact"},{"name":"decreased polyadenylated mRNA export from nucleus","type":"exact"},{"name":"reduced poly(A)+ mRNA export from nucleus","type":"exact"}],"termid":"FYPO:0002522"}


id: GO:0060591
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a mesenchymal cell, acquires specialized structural and/or functional features of a chondroblast. Differentiation includes the processes involved in commitment of a cell to a chondroblast fate. A chondroblast is a precursor cell to chondrocytes.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation","termid":"GO:0030154"},{"relation_name":"part_of","term_name":"cartilage development","termid":"GO:0051216"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"chondroblast differentiation","synonyms":[{"name":"chondrocyte progenitor cell differentiation","type":"related"}],"termid":"GO:0060591"}


id: MONDO:0000442
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete paramyloidosis (obsolete MONDO:0000442)","termid":"MONDO:0000442","xrefs":{"Monarch":{"xref_id":"0000442"}}}


id: GO:0040031
data:
  {"annotated_genes":["SJAG_01958","SJAG_01234","SJAG_04754","SJAG_00088","SJAG_00566","SJAG_03572","SJAG_00083"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95515],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0120049"},{"annotations":[106618,78107,80442,106555,59266,114624],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031120"}]},"cv_name":"biological_process","definition":"The covalent alteration of one or more nucleotides within snRNA, resulting in a change in the properties of the snRNA.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA modification","termid":"GO:0009451"},{"relation_name":"is_a","term_name":"snRNA processing","termid":"GO:0016180"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00083":null,"SJAG_00088":null,"SJAG_00566":null,"SJAG_01234":null,"SJAG_01958":null,"SJAG_03572":null,"SJAG_04754":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016073"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0016073","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"snRNA modification","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null},"termid":"GO:0040031","terms_by_termid":{"GO:0031120":null,"GO:0120049":null}}


id: GO:0140975
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The disruption of a cellular component of another organism, leading to damage or temporary subversion of that structure. In some cases this can cause malfunctioning of the cells and death of the target organism.","definition_xrefs":["GOC:pg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disruption of anatomical structure in another organism","termid":"GO:0141060"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"disruption of cellular anatomical structure in another organism","synonyms":[{"name":"disruption of cellular component of another organism","type":"broad"}],"termid":"GO:0140975"}


id: PBO:0001870
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OTU family","termid":"PBO:0001870"}


id: PBO:0046490
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"erythroferrone","termid":"PBO:0046490"}


id: PR:P24339
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cut7 gene.","definition_xrefs":["UniProtKB:P24339","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin-like protein cut7 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC25G10.07c","synonyms":[{"name":"Spom972h-cut7","type":"exact"},{"name":"cell untimely torn protein 7 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P24339"}


id: PBO:0083332
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps ORF YER152C","termid":"PBO:0083332"}


id: MONDO:0006782
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Blood-filled uterus.","definition_xrefs":["MESH:D006409"],"direct_ancestors":[{"relation_name":"is_a","term_name":"uterine disorder","termid":"MONDO:0002654"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hemometra","secondary_identifiers":["SCTID:38280009","UMLS:C0018948","ICD10CM:N85.7","ICD9:621.4","MEDGEN:6776","DOID:9958"],"synonyms":[{"name":"hematometra","type":"exact"}],"termid":"MONDO:0006782","xrefs":{"Monarch":{"xref_id":"0006782"}}}


id: MONDO:0044033
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An acute or subacute reversible condition characterized by headaches, mental status changes, visual disturbances, and seizures associated with imaging findings of posterior leukoencephalopathy. It has been observed in association with hypertensive encephalopathy, eclampsia, and immunosuppressive and cytotoxic drug treatment.","definition_xrefs":["NCIT:C78598"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hypertensive encephalopathy","termid":"MONDO:0006796"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"posterior leukoencephalopathy syndrome","secondary_identifiers":["MESH:D054038","MEDGEN:163898","UMLS:C0878576","SCTID:450886002"],"synonyms":[{"name":"PRES","type":"exact"},{"name":"Posterior reversible encephalopathy syndrome","type":"exact"},{"name":"RPLE","type":"exact"},{"name":"leukoencephalopathy syndrome, Posterior","type":"related"},{"name":"leukoencephalopathy syndromes, Posterior","type":"related"},{"name":"posterior reversible encephalopathy syndrome","type":"exact"},{"name":"reversible Posterior cerebral edema syndrome","type":"exact"},{"name":"reversible Posterior cerebral oedema syndrome","type":"exact"},{"name":"reversible Posterior leukoencephalopathy syndrome","type":"exact"},{"name":"reversible occipital parietal encephalopathy","type":"exact"},{"name":"reversible posterior leukoencephalopathy syndrome","type":"exact"},{"name":"syndrome, Posterior leukoencephalopathy","type":"related"},{"name":"syndromes, Posterior leukoencephalopathy","type":"related"}],"termid":"MONDO:0044033","xrefs":{"Monarch":{"xref_id":"0044033"}}}


id: PBO:0049707
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyaluronan synthase 2","termid":"PBO:0049707"}


id: PBO:0111381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis protein Llp1","termid":"PBO:0111381"}


id: PBO:0057558
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 676","termid":"PBO:0057558"}


id: PBO:0017870
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human RanBP1","termid":"PBO:0017870"}


id: PBO:0043894
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cysteine rich protein 1 pseudogene 1","termid":"PBO:0043894"}


id: PBO:0017956
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FRG1 family protein, involved in mRNA splicing (predicted)","termid":"PBO:0017956"}


id: FYPO:0007688
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the kinetochore of a chromosome does not occur during metaphase of the first meiotic nuclear division.","definition_xrefs":["PMID:16541024","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to kinetochore during meiosis I","termid":"FYPO:0004763"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000138","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abolished protein localization to kinetochore during meiotic metaphase I","synonyms":[{"name":"abolished protein localisation to kinetochore during meiotic metaphase I","type":"exact"},{"name":"abolished protein localization to kinetochore during meiosis I metaphase","type":"exact"},{"name":"protein localization to kinetochore abolished during meiotic metaphase I","type":"exact"}],"termid":"FYPO:0007688"}


id: PBO:0051366
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 3-34 (pseudogene)","termid":"PBO:0051366"}


id: GO:0047772
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: carboxymethoxysuccinate = fumarate + glycolate.","definition_xrefs":["RHEA:12336","EC:4.2.99.12"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity","termid":"GO:0016835"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016829","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"carboxymethyloxysuccinate lyase activity","secondary_identifiers":["KEGG_REACTION:R01336","MetaCyc:CARBOXYMETHYLOXYSUCCINATE-LYASE-RXN"],"synonyms":[{"name":"carboxymethyloxysuccinate glycolate-lyase (fumarate-forming)","type":"related"},{"name":"carboxymethyloxysuccinate glycolate-lyase activity","type":"related"}],"termid":"GO:0047772"}


id: GO:0055036
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding a virion.","definition_xrefs":["GOC:jid","GOC:rph","PMID:213106"],"direct_ancestors":[{"relation_name":"is_a","term_name":"virion component","termid":"GO:0044423"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"virion membrane","termid":"GO:0055036"}


id: PBO:0064269
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pleckstrin homology and RhoGEF domain containing G3","termid":"PBO:0064269"}


id: PATO:0001853
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality which is held by a bearer when the latter exhibits an excessive accumulation of cerebral spinal fluid.","definition_xrefs":["PATOC:mh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"edematous","termid":"PATO:0001450"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydrocephalic","termid":"PATO:0001853"}


id: PBO:0069280
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 536, pseudogene","termid":"PBO:0069280"}


id: PBO:0028033
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_curved_elongated_mononucleate_vegetative_cell","termid":"PBO:0028033"}


id: MONDO:0018975
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A clinically heterogeneous, neurocutaneous genetic disorder characterized by cafe-au-lait spots, iris Lisch nodules, axillary and inguinal freckling, and multiple neurofibromas.","definition_xrefs":["Orphanet:636"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"eye disorder","termid":"MONDO:0005328"},{"relation_name":"excluded_subClassOf","term_name":"obsolete Moyamoya syndrome (obsolete MONDO:0018792)","termid":"MONDO:0018792"},{"relation_name":"excluded_subClassOf","term_name":"obsolete rare skin tumor or hamartoma (obsolete MONDO:0019300)","termid":"MONDO:0019300"},{"relation_name":"excluded_subClassOf","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"},{"relation_name":"is_a","term_name":"developmental defect during embryogenesis","termid":"MONDO:0019755"},{"relation_name":"is_a","term_name":"RASopathy","termid":"MONDO:0021060"},{"relation_name":"is_a","term_name":"neurofibromatosis","termid":"MONDO:0021061"},{"relation_name":"is_a","term_name":"neurocristopathy","termid":"MONDO:0021635"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"neurofibromatosis type 1","secondary_identifiers":["ICD9:237.71","MedDRA:10047712","NCIT:C3273","GARD:7866","NORD:1502","NANDO:2201003","SCTID:92824003","UMLS:C0027831","NANDO:2100287","MESH:D009456","NANDO:1200225","DOID:0111253","NANDO:1200226","OMIM:162200","DECIPHER:15","MEDGEN:18013","MESH:C538607","icd11.foundation:337970533"],"synonyms":[{"name":"NF1","type":"exact"},{"name":"Neurofibromatosis 1","type":"exact"},{"name":"Nf1-Microdeletion syndrome","type":"exact"},{"name":"Recklinghausen's disease","type":"related"},{"name":"Von Recklinghausen disease","type":"related"},{"name":"neurofibromatosis","type":"broad"},{"name":"neurofibromatosis 1","type":"exact"},{"name":"neurofibromatosis type 1","type":"exact"},{"name":"neurofibromatosis type 1 microdeletion syndrome","type":"related"},{"name":"neurofibromatosis type i","type":"exact"},{"name":"neurofibromatosis, peripheral type","type":"related"},{"name":"neurofibromatosis, type 1","type":"exact"},{"name":"neurofibromatosis, type I","type":"related"},{"name":"nonmosaic NF1","type":"exact"},{"name":"nonmosaic neurofibromatosis type 1","type":"exact"},{"name":"peripheral neurofibromatosis","type":"exact"},{"name":"type 1 neurofibromatosis","type":"related"},{"name":"von Reklinghausen disease","type":"related"}],"termid":"MONDO:0018975","xrefs":{"Monarch":{"xref_id":"0018975"}}}


id: GO:0045219
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of FasL.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of FasL production (obsolete GO:0045219)","synonyms":[{"name":"regulation of FasL anabolism","type":"exact"},{"name":"regulation of FasL biosynthesis","type":"exact"},{"name":"regulation of FasL formation","type":"exact"},{"name":"regulation of FasL synthesis","type":"exact"}],"termid":"GO:0045219"}


id: PBO:0073292
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin 14 pseudogene 14","termid":"PBO:0073292"}


id: MONDO:0006474
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant neoplasm arising from the transitional epithelium, usually affecting the urinary bladder, ureter, or renal pelvis. It may or may not have a papillary configuration. It is graded 1 to 3 or 4 according to the degree of cellular differentiation and architectural patterns. Grade 1 transitional cell carcinoma is histologically benign but it may recur. Transitional cell carcinomas may also affect the upper respiratory tract and the ovaries.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carcinoma","termid":"MONDO:0004993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"transitional cell carcinoma","secondary_identifiers":["MESH:D002295","NCIT:C2930","MEDGEN:2875","ICDO:8120/3","NCIT:C6783","EFO:1000601","DOID:2671","GARD:7794","UMLS:C0007138"],"synonyms":[{"name":"carcinoma of transitional epithelial cell","type":"exact"},{"name":"carcinoma of urothelial cell","type":"exact"},{"name":"carcinoma, urothelial, malignant","type":"exact"},{"name":"transitional carcinoma","type":"exact"},{"name":"transitional cell carcinoma","type":"exact"},{"name":"transitional cell neoplasm","type":"broad"},{"name":"transitional cell tumor","type":"broad"},{"name":"transitional cell tumour","type":"broad"},{"name":"transitional epithelial cell carcinoma","type":"exact"},{"name":"urothelial cell carcinoma","type":"exact"}],"termid":"MONDO:0006474","xrefs":{"Monarch":{"xref_id":"0006474"}}}


id: FYPO:0004000
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of glutamate-cysteine ligase activity is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased catalytic activity","termid":"FYPO:0000662"},{"relation_name":"is_a","term_name":"abnormal glutamate-cysteine ligase activity","termid":"FYPO:0002853"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0000654","FYPO:0000652","FYPO:0000707","FYPO:0001985"],"is_obsolete":false,"name":"increased glutamate-cysteine ligase activity","termid":"FYPO:0004000"}


id: PBO:0063185
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PBX homeobox interacting protein 1","termid":"PBO:0063185"}


id: FYPO:0003166
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell has two nuclei and one septum, but both nuclei are in a single compartment on one side of the septum. Arises when a cell undergoes septation despite abnormal chromosome segregation, producing inviable daughter cells, and in which the septum forms in a position that partitions both nuclei into one compartment. Cell separation may or may not be completed.","definition_xrefs":["PomBase:vw","PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"monoseptate","termid":"FYPO:0001225"},{"relation_name":"has_part","term_name":"mislocalized nucleus during vegetative growth","termid":"FYPO:0002071"},{"relation_name":"is_a","term_name":"mislocalized nucleus during vegetative growth","termid":"FYPO:0002071"},{"relation_name":"is_a","term_name":"septated vegetative cell","termid":"FYPO:0002342"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000138","FYPO:0001320","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"monoseptate vegetative cell with binucleate and anucleate compartments","secondary_identifiers":["FYPO:0004699"],"synonyms":[{"name":"abnormal nuclear segregation","type":"related"},{"name":"binucleate monoseptate cell with nuclei grouped","type":"related"},{"name":"monoseptate cell with binucleate and anucleate compartments during vegetative growth","type":"exact"},{"name":"monoseptate vegetative cell with binucleate and anucleate compartments during mitotic cell cycle","type":"related"},{"name":"monoseptate vegetative cell with binucleate and anucleate compartments following abnormal chromosome segregation","type":"exact"},{"name":"nuclear missegregation","type":"related"},{"name":"septation following abnormal chromosome segregation, with binucleate and anucleate compartment formation","type":"exact"},{"name":"septation following abnormal chromosome segregation, with binucleate cell formation","type":"exact"},{"name":"unequal nuclear partitioning","type":"related"}],"termid":"FYPO:0003166"}


id: PBO:0057894
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3198-1","termid":"PBO:0057894"}


id: GO:1904340
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of dopaminergic neuron differentiation.","definition_xrefs":["GOC:TermGenie","PMID:15522889","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of neuron differentiation","termid":"GO:0045666"},{"relation_name":"is_a","term_name":"regulation of dopaminergic neuron differentiation","termid":"GO:1904338"},{"relation_name":"positively_regulates","term_name":"dopaminergic neuron differentiation","termid":"GO:0071542"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of dopaminergic neuron differentiation","synonyms":[{"name":"activation of dopaminergic neuron differentiation","type":"narrow"},{"name":"up regulation of dopaminergic neuron differentiation","type":"exact"},{"name":"up-regulation of dopaminergic neuron differentiation","type":"exact"},{"name":"upregulation of dopaminergic neuron differentiation","type":"exact"}],"termid":"GO:1904340"}


id: PBO:0074799
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 13D","termid":"PBO:0074799"}


id: PBO:0027743
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_phosphorylation_during_cellular_response_to_camptothecin","termid":"PBO:0027743"}


id: GO:0043874
data:
  {"annotated_genes":["SJAG_01404"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[79558],"is_not":false,"summary":null,"term":"GO:0043874"}]},"cv_name":"molecular_function","definition":"Catalysis of the reactions:5-methylsulfanyl-2,3-dioxopentyl phosphate + H2O = 1,2-dihydroxy-5-(methylsulfanyl)pent-1-en-3-one + phosphate.","definition_xrefs":["RHEA:21700"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatase activity","termid":"GO:0016791"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01404":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016788","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"acireductone synthase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:3.1.3.77-RXN","Reactome:R-HSA-1237129","EC:3.1.3.77"],"synonyms":[{"name":"5-(methylthio)-2,3-dioxopentyl-phosphate phosphohydrolase (isomerizing)","type":"related"},{"name":"E-1","type":"related"},{"name":"E-1 enolase-phosphatase","type":"broad"}],"termid":"GO:0043874","terms_by_termid":{"GO:0043874":null}}


id: PBO:0073418
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"senataxin","termid":"PBO:0073418"}


id: PBO:0052061
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysine acetyltransferase 2A","termid":"PBO:0052061"}


id: PBO:0051956
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inositol 1,4,5-trisphosphate receptor type 3","termid":"PBO:0051956"}


id: PBO:0002559
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptionally regulated by Ste11","termid":"PBO:0002559"}


id: PBO:0069602
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 879, pseudogene","termid":"PBO:0069602"}


id: PBO:0030520
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_RNA_level_during_cellular_response_to_purvalanol_A","termid":"PBO:0030520"}


id: MONDO:0859352
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spermatogenic failure","termid":"MONDO:0004983"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"spermatogenic failure 79","secondary_identifiers":["MEDGEN:1824063","OMIM:620196","UMLS:C5774290","DOID:0070578"],"termid":"MONDO:0859352","xrefs":{"Monarch":{"xref_id":"0859352"}}}


id: PBO:0065604
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PTOV1 antisense RNA 2","termid":"PBO:0065604"}


id: PR:Q9Y820
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pci2 gene.","definition_xrefs":["UniProtKB:Q9Y820","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PCI domain-containing protein C1105.07c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1105.07c","synonyms":[{"name":"Spom972h-pci2","type":"exact"}],"termid":"PR:Q9Y820"}


id: PBO:0081059
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger CCHC-type containing 17","termid":"PBO:0081059"}


id: PBO:0064160
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase A2 group IIE","termid":"PBO:0064160"}


id: PBO:0057810
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3131","termid":"PBO:0057810"}


id: FYPO:0000295
data:
  {"alleles_by_uniquename":{"SJAG_01143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01143","name":"mid1delta","uniquename":"SJAG_01143:allele-1"},"SJAG_02392:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02392","name":"pom1delta","uniquename":"SJAG_02392:allele-1"},"SJAG_02592:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02592","name":"sty1delta","uniquename":"SJAG_02592:allele-1"},"SJAG_03596:allele-1":{"allele_type":"amino_acid_mutation","description":"L264P,P442T","gene_uniquename":"SJAG_03596","name":"cdc15-A","uniquename":"SJAG_03596:allele-1"},"SJAG_04280:allele-1":{"allele_type":"amino_acid_mutation","description":"T582G","gene_uniquename":"SJAG_04280","name":"wee1-as8","uniquename":"SJAG_04280:allele-1"},"SJAG_04522:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04522","name":"rga4delta","uniquename":"SJAG_04522:allele-1"},"SJAG_04703:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04703","name":"for3delta","uniquename":"SJAG_04703:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[119776],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000231"},{"annotations":[119781],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000729"},{"annotations":[119518],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0001369"}],"single_locus_phenotype":[{"annotations":[119769],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000231"},{"annotations":[119522],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000198"},{"annotations":[119431,119948],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0002998"},{"annotations":[119546],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0003315"},{"annotations":[119802],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0002026"},{"annotations":[119725,119770],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000729"},{"annotations":[119519],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0001369"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype that affects cytoskeleton organization. Cytoskeleton organization results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures.","definition_xrefs":["GO:0007010","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component organization phenotype","termid":"FYPO:0000334"}],"gene_count":7,"genes_by_uniquename":{"SJAG_01143":null,"SJAG_02392":null,"SJAG_02592":null,"SJAG_03596":null,"SJAG_04280":null,"SJAG_04522":null,"SJAG_04703":null},"genotype_count":10,"genotypes_by_uniquename":{"cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cdc15-A(L264P,P442T aa)","display_uniquename":"cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03596:allele-1","expression":"Not assayed or wild type"}]}]},"cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type__mid1delta":{"display_name":"cdc15-A(L264P,P442T aa) mid1delta","display_uniquename":"cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type__mid1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03596:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]}]},"for3delta":{"display_name":"for3delta","display_uniquename":"for3delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04703:allele-1","expression":"Null"}]}]},"mid1delta":{"display_name":"mid1delta","display_uniquename":"mid1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]}]},"mid1delta__pom1delta":{"display_name":"mid1delta pom1delta","display_uniquename":"mid1delta__pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]},"pom1delta":{"display_name":"pom1delta","display_uniquename":"pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]},"rga4delta":{"display_name":"rga4delta","display_uniquename":"rga4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]}]},"rga4delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"rga4delta wee1-as8(T582G aa)","display_uniquename":"rga4delta__wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04522:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-1","expression":"Not assayed or wild type"}]}]},"sty1delta":{"display_name":"sty1delta","display_uniquename":"sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]},"wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"wee1-as8(T582G aa)","display_uniquename":"wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_04522","SJAG_01143","SJAG_02392","SJAG_04280","SJAG_03596"],"name":"cytoskeleton organization phenotype","references_by_uniquename":{"PMID:25866389":null,"PMID:27059155":null,"PMID:30664646":null,"PMID:30726171":null,"PMID:32915139":null,"PMID:33791858":null},"single_locus_annotated_genes":["SJAG_04522","SJAG_03596","SJAG_04280","SJAG_04703","SJAG_02592","SJAG_02392","SJAG_01143"],"single_locus_genotype_uniquenames":["for3delta","mid1delta","pom1delta","cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type","rga4delta","wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","sty1delta"],"synonyms":[{"name":"cytoskeleton organisation phenotype","type":"exact"},{"name":"fission yeast cytoskeleton organization phenotype","type":"exact"}],"termid":"FYPO:0000295","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000126":null,"FYECO:0000137":null,"FYECO:0000162":null,"FYECO:0000248":null,"FYECO:0000338":null,"FYPO:0000198":null,"FYPO:0000231":null,"FYPO:0000729":null,"FYPO:0001369":null,"FYPO:0002026":null,"FYPO:0002998":null,"FYPO:0003315":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: GO:1901495
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cysteine metabolic process.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of sulfur amino acid metabolic process","termid":"GO:0031336"},{"relation_name":"is_a","term_name":"negative regulation of amino acid metabolic process","termid":"GO:0045763"},{"relation_name":"is_a","term_name":"regulation of cysteine metabolic process","termid":"GO:1901494"},{"relation_name":"negatively_regulates","term_name":"cysteine metabolic process","termid":"GO:0006534"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006790"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006520"},{"rel_name":"regulates","termid":"GO:0006520"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006790","GO:0006520","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"negative regulation of cysteine metabolic process","synonyms":[{"name":"down regulation of cysteine metabolic process","type":"exact"},{"name":"down regulation of cysteine metabolism","type":"exact"},{"name":"down-regulation of cysteine metabolic process","type":"exact"},{"name":"down-regulation of cysteine metabolism","type":"exact"},{"name":"downregulation of cysteine metabolic process","type":"exact"},{"name":"downregulation of cysteine metabolism","type":"exact"},{"name":"inhibition of cysteine metabolic process","type":"narrow"},{"name":"inhibition of cysteine metabolism","type":"narrow"},{"name":"negative regulation of cysteine metabolism","type":"exact"}],"termid":"GO:1901495"}


id: PBO:0073091
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"succinate dehydrogenase complex subunit C","termid":"PBO:0073091"}


id: GO:0019387
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of methane, a colorless, odorless, flammable gas with the formula CH4, from other components, including methanol.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methanol metabolic process","termid":"GO:0015945"},{"relation_name":"is_a","term_name":"methanogenesis","termid":"GO:0015948"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006091"],"is_obsolete":false,"name":"methanogenesis, from methanol","secondary_identifiers":["MetaCyc:METHFORM-PWY"],"synonyms":[{"name":"methane biosynthesis from methanol","type":"exact"},{"name":"methane biosynthetic process from methanol","type":"exact"}],"termid":"GO:0019387"}


id: MONDO:0005166
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign, well-circumscribed, bone-forming neoplasm predominantly composed of lamellar bone. It usually arises from the calvarial, facial, or jaw bones. It is usually asymptomatic but it may cause local swelling or obstruction of the paranasal sinuses. Asymptomatic cases have an indolent clinical course.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bone benign neoplasm","termid":"MONDO:0000631"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"osteoma","secondary_identifiers":["SCTID:302858007","ICDO:9180/0","HP:0100246","MESH:D010016","EFO:0002423","MEDGEN:18220","NCIT:C3296","UMLS:C0029440"],"synonyms":[{"name":"osteoma","type":"exact"},{"name":"osteoma (disease)","type":"exact"},{"name":"osteoma, benign","type":"exact"}],"termid":"MONDO:0005166","xrefs":{"Monarch":{"xref_id":"0005166"}}}


id: PBO:0059155
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metallophosphoesterase 1","termid":"PBO:0059155"}


id: PBO:0049934
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HHIP antisense RNA 1","termid":"PBO:0049934"}


id: GO:1904695
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of vascular smooth muscle contraction.","definition_xrefs":["GOC:BHF","GOC:rph","GOC:BHF_miRNA","GO_REF:0000058","GOC:TermGenie","PMID:22158624"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of vascular associated smooth muscle contraction","termid":"GO:0003056"},{"relation_name":"is_a","term_name":"positive regulation of vasoconstriction","termid":"GO:0045907"},{"relation_name":"is_a","term_name":"positive regulation of smooth muscle contraction","termid":"GO:0045987"},{"relation_name":"positively_regulates","term_name":"vascular associated smooth muscle contraction","termid":"GO:0014829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of vascular associated smooth muscle contraction","synonyms":[{"name":"activation of vascular smooth muscle contraction","type":"narrow"},{"name":"positive regulation of vascular smooth muscle contraction","type":"exact"},{"name":"up regulation of vascular smooth muscle contraction","type":"exact"},{"name":"up-regulation of vascular smooth muscle contraction","type":"exact"},{"name":"upregulation of vascular smooth muscle contraction","type":"exact"}],"termid":"GO:1904695"}


id: PBO:0030837
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_guanine_import","termid":"PBO:0030837"}


id: PBO:0042404
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell division cycle 14C","termid":"PBO:0042404"}


id: GO:1904808
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein oxidation.","definition_xrefs":["PMID:22719267","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein modification process","termid":"GO:0031401"},{"relation_name":"is_a","term_name":"regulation of protein oxidation","termid":"GO:1904806"},{"relation_name":"positively_regulates","term_name":"protein oxidation","termid":"GO:0018158"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of protein oxidation","synonyms":[{"name":"activation of protein amino acid oxidation","type":"narrow"},{"name":"activation of protein oxidation","type":"narrow"},{"name":"positive regulation of protein amino acid oxidation","type":"exact"},{"name":"up regulation of protein amino acid oxidation","type":"exact"},{"name":"up regulation of protein oxidation","type":"exact"},{"name":"up-regulation of protein amino acid oxidation","type":"exact"},{"name":"up-regulation of protein oxidation","type":"exact"},{"name":"upregulation of protein amino acid oxidation","type":"exact"},{"name":"upregulation of protein oxidation","type":"exact"}],"termid":"GO:1904808"}


id: MONDO:0016385
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"This syndrome is characterized by the association of hypogonadism due to primary gonadal failure, mitral valve prolapse, mild intellectual deficit and short stature.","definition_xrefs":["Orphanet:2233"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypogonadism-mitral valve prolapse-intellectual disability syndrome","secondary_identifiers":["SCTID:721841001","GARD:1078","MESH:C537981","UMLS:C2931685","MEDGEN:444117"],"synonyms":[{"name":"Cantalamessa Baldini Ambrosi syndrome","type":"related"},{"name":"Cantalamessa-Baldini-Ambrosi syndrome","type":"exact"},{"name":"primary gonadal failure, short stature, mitral valve prolapse, and intellectual disability","type":"related"},{"name":"primary gonadal failure, short stature, mitral valve prolapse, and mental retardation","type":"related"}],"termid":"MONDO:0016385","xrefs":{"Monarch":{"xref_id":"0016385"}}}


id: PATO:0001157
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001157 absolute concentration value (obsolete PATO:0001157)","termid":"PATO:0001157"}


id: PBO:0089792
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COP9/signalosome complex subunit 7a","termid":"PBO:0089792"}


id: PBO:0108954
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMEM69 pseudogene 2","termid":"PBO:0108954"}


id: PR:O14240
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- eaf6 gene.","definition_xrefs":["UniProtKB:O14240","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromatin modification-related protein eaf6 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6F6.09","synonyms":[{"name":"Spom972h-eaf6","type":"exact"}],"termid":"PR:O14240"}


id: PBO:0046025
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 2B subunit beta","termid":"PBO:0046025"}


id: MOD:00442
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"Covalent modification of a peptide or protein L-arginine residue to protonated omega-N,omega-N'-dimethylated L-arginine with secondary loss of an N,N'-carbodiimide molecular fragment.","definition_xrefs":["PubMed:15835918","PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified residue with a secondary neutral loss","termid":"MOD:00431"},{"relation_name":"is_a","term_name":"modified L-arginine residue","termid":"MOD:00902"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protonated omega-N,omega-N'-dimethylated L-arginine with secondary neutral loss of N,N'-carbodiimide","synonyms":[{"name":"dCDI-NNMe2+Arg","type":"exact"}],"termid":"MOD:00442"}


id: PBO:0046675
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"extended synaptotagmin 1","termid":"PBO:0046675"}


id: PBO:0027424
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_level_during_cellular_response_to_salt_stress","termid":"PBO:0027424"}


id: PBO:0079153
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetraspanin 13","termid":"PBO:0079153"}


id: MONDO:0001116
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Inflammation of the mesenteric lymph nodes.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lymphadenitis","termid":"MONDO:0002052"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"mesenteric lymphadenitis","secondary_identifiers":["ICD9:289.2","MESH:D008640","MEDGEN:6318","NCIT:C26830","UMLS:C0025469","DOID:10782","SCTID:44897000"],"synonyms":[{"name":"lymphadenitis (disease) of mesentery","type":"exact"},{"name":"mesenteric adenitis","type":"exact"},{"name":"mesenteric lymphadenitis","type":"exact"},{"name":"mesentery lymphadenitis (disease)","type":"exact"}],"termid":"MONDO:0001116","xrefs":{"Monarch":{"xref_id":"0001116"}}}


id: FYPO:0007489
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the Golgi apparatus is decreased, and the protein is present in the cytosol instead.","definition_xrefs":["PMID:32918581","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to Golgi apparatus","termid":"FYPO:0004786"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"decreased protein localization to Golgi apparatus, with protein mislocalized to cytosol","synonyms":[{"name":"decreased protein localisation to Golgi apparatus, with protein mislocalised to cytosol","type":"exact"},{"name":"decreased protein localization to Golgi apparatus, with protein mislocalized to cytosol during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to Golgi apparatus, with protein mislocalized to cytosol during vegetative growth","type":"exact"},{"name":"reduced protein localization to Golgi apparatus, with protein mislocalized to cytosol","type":"exact"}],"termid":"FYPO:0007489"}


id: PBO:0088044
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ubiquitin-conjugating enzyme involved in ERAD; located at the cytosolic side of the ER membrane; tail region contains a transmembrane segment at the C-terminus; substrate of the ubiquitin-proteasome pathway; ER-associated protein degradation is also known as ERAD","termid":"PBO:0088044"}


id: MONDO:1010848
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A lysosomal storage disease in sheep due to a mutation in the GLB1 gene. There is a buildup of GM1 gangliosides in tissues due to a lack of the enzyme beta-galactosidase. It is characterised by progressive neuromuscular dysfunction and impaired growth from an early age.","definition_xrefs":["OMIA:000402-9940"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gangliosidosis, non-human animal","termid":"MONDO:1010167"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GM1 gangliosidosis GLB1-related, sheep","synonyms":[{"name":"gangliosidosis GM1, sheep","type":"related"}],"termid":"MONDO:1010848","xrefs":{"Monarch":{"xref_id":"1010848"}}}


id: GO:0140108
data:
  {"annotated_genes":["SJAG_03608"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[114507],"is_not":false,"summary":null,"term":"GO:0140108"}]},"cv_name":"molecular_function","definition":"Enables the transfer of D-glucose from one side of a membrane to the other. In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations.","definition_xrefs":["PMID:25411338"],"direct_ancestors":[{"relation_name":"is_a","term_name":"D-glucose transmembrane transporter activity","termid":"GO:0055056"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03608":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"high-affinity D-glucose transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"high-affinity glucose transmembrane transporter activity","type":"exact"}],"termid":"GO:0140108","terms_by_termid":{"GO:0140108":null}}


id: PBO:0043384
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"clavesin 2","termid":"PBO:0043384"}


id: MONDO:0009512
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Larsen-like syndrome, lethal type, is characterized by multiple joint dislocation and respiratory insufficiency due to tracheomalacia and/or lung hypoplasia. It has been described in less than ten patients. Transmission is thought to be autosomal recessive. Brain dysplasia has been described in some patients and could result from systemic hypoxic-ischemic insults during the second half of pregnancy, although genetic factors have not been ruled out.","definition_xrefs":["Orphanet:2371"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete primary bone dysplasia with multiple joint dislocations (obsolete MONDO:0019700)","termid":"MONDO:0019700"},{"relation_name":"is_a","term_name":"developmental defect during embryogenesis","termid":"MONDO:0019755"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lethal Larsen-like syndrome","secondary_identifiers":["MEDGEN:343375","GARD:3181","SCTID:719409004","UMLS:C1855535","OMIM:245650","icd11.foundation:1014532279","MESH:C537872"],"synonyms":[{"name":"Larsen-like multiple joint dislocation syndrome","type":"related"},{"name":"Larsen-like syndrome, lethal type","type":"related"}],"termid":"MONDO:0009512","xrefs":{"Monarch":{"xref_id":"0009512"}}}


id: PBO:0065602
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PTOV1 extended AT-hook containing adaptor protein","termid":"PBO:0065602"}


id: MONDO:0007760
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyperlipoproteinemia, type II, and deafness","secondary_identifiers":["MEDGEN:326732","OMIM:144300","MESH:C564170","UMLS:C1840425"],"synonyms":[{"name":"hyperlipoproteinemia, type II, and deafness","type":"exact"}],"termid":"MONDO:0007760","xrefs":{"Monarch":{"xref_id":"0007760"}}}


id: PBO:0082956
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytoplasmic protein involved in halotolerance; decreases intracellular Na+ (via Ena1p) and increases intracellular K+ by decreasing efflux; expression repressed by Ssn6p-Tup1p and Sko1p and induced by NaCl, KCl, and sorbitol through Gcn4p","termid":"PBO:0082956"}


id: GO:1901058
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving p-hydroxyphenyl lignin.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lignin metabolic process","termid":"GO:0009808"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"p-hydroxyphenyl lignin metabolic process","synonyms":[{"name":"H-lignin metabolic process","type":"exact"},{"name":"p-hydroxyphenyl lignin metabolism","type":"exact"}],"termid":"GO:1901058"}


id: PBO:0063841
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol 4-kinase alpha","termid":"PBO:0063841"}


id: FYPO:0008032
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle checkpoint phenotype in which the mitotic cell cycle spindle assembly checkpoint activation is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PMID:36108046"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal mitotic spindle assembly checkpoint","termid":"FYPO:0003762"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000002","FYPO:0001320","FYPO:0000257","FYPO:0000298","FYPO:0000631"],"is_obsolete":false,"name":"normal mitotic spindle checkpoint activation","termid":"FYPO:0008032"}


id: MONDO:0035696
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A histopathological form of portosinusoidal vascular disease characterized by the presence of incomplete, thin, perforated, or blind-ended septa, which intermittently delimit rudimentary nodules, although complete cirrhotic-type regenerative nodules are not seen. Isolated collagen bundles can also be observed within the parenchyma.","definition_xrefs":["Orphanet:596941"],"direct_ancestors":[{"relation_name":"is_a","term_name":"portosinusoidal vascular disease","termid":"MONDO:0035357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0002515"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0002515"],"is_obsolete":false,"name":"incomplete septal cirrhosis","secondary_identifiers":["MEDGEN:1387804","GARD:22394","ICD10CM:K74.6","UMLS:C0544815"],"synonyms":[{"name":"Incomplete septal fibrosis","type":"exact"}],"termid":"MONDO:0035696","xrefs":{"Monarch":{"xref_id":"0035696"}}}


id: GO:0010448
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The increase in size or mass of a vegetative meristem, a population of undifferentiated cells in a plant shoot which maintains a continuous balance between the production of stem cells and the incorporation of their derivatives into lateral organ primordia.","definition_xrefs":["GOC:tb","ISBN:0849397928"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meristem growth","termid":"GO:0035266"},{"relation_name":"is_a","term_name":"developmental vegetative growth","termid":"GO:0080186"},{"relation_name":"part_of","term_name":"shoot system development","termid":"GO:0048367"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"vegetative meristem growth","termid":"GO:0010448"}


id: GO:0044510
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant positive regulation of signal transduction in the bitten organism.","definition_xrefs":["GOC:fj","GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete venom-mediated activation of signal transduction in another organism (obsolete GO:0044510)","synonyms":[{"name":"envenomation resulting in positive regulation of signal transduction in another organism","type":"exact"},{"name":"envenomation resulting in positive regulation of signal transduction in other organism","type":"exact"}],"termid":"GO:0044510"}


id: PBO:0043563
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collagen type VI alpha 2 chain","termid":"PBO:0043563"}


id: PBO:0065433
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome 26S subunit, ATPase 1 pseudogene 6","termid":"PBO:0065433"}


id: GO:0099082
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Cell-cell signaling from postsynapse to presynapse, across the synaptic cleft, mediated by a neuropeptide.","definition_xrefs":["GOC:dos","GOC:bf","PMID:19448629","GOC:PARL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retrograde trans-synaptic signaling","termid":"GO:0098917"},{"relation_name":"is_a","term_name":"trans-synaptic signaling by neuropeptide","termid":"GO:0099540"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"retrograde trans-synaptic signaling by neuropeptide","termid":"GO:0099082"}


id: PBO:0064335
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PLSCR4 pseudogene 1","termid":"PBO:0064335"}


id: PBO:0060064
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND5 pseudogene 11","termid":"PBO:0060064"}


id: PBO:0062685
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 51 subfamily A member 6 pseudogene","termid":"PBO:0062685"}


id: FYPO:0001859
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which minichromosomes are lost at a higher frequency than normal. Minichromosome loss occurs when one or both daughter cells do not inherit copies of a minichromosome from the mother cell, and may result from failure of minichromosome replication or segregation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell phenotype","termid":"FYPO:0003037"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"increased minichromosome loss","synonyms":[{"name":"minichromosome maintenance defect","type":"related"}],"termid":"FYPO:0001859"}


id: PBO:0042967
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil-helix-coiled-coil-helix domain containing 4 pseudogene 5","termid":"PBO:0042967"}


id: GO:0030687
data:
  {"annotated_genes":["SJAG_00722","SJAG_02830","SJAG_01275","SJAG_04492","SJAG_02436","SJAG_03719","SJAG_01454","SJAG_02427","SJAG_02759","SJAG_04346","SJAG_03466","SJAG_03413","SJAG_01606","SJAG_04395","SJAG_00311","SJAG_00271","SJAG_04330","SJAG_01494","SJAG_03697","SJAG_02644","SJAG_01811","SJAG_01839","SJAG_04491","SJAG_00882","SJAG_00689","SJAG_04992"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[61773,71612,71976,72327,72643,75323,75536,76443,76582,77084,77714,78593,79083,79716,80213,93537,95162,98291,99498,99782,103825,116555],"is_not":false,"summary":null,"term":"GO:0030687"},{"annotations":[80471,73222,98202],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030690"},{"annotations":[112766,73223,80472],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030691"}]},"cv_name":"cellular_component","definition":"A preribosomal complex consisting of 27SA, 27SB, and/or 7S pre-rRNA, 5S rRNA, ribosomal proteins including late-associating large subunit proteins, and associated proteins; a precursor of the eukaryotic cytoplasmic large ribosomal subunit.","definition_xrefs":["PMID:10567516"],"direct_ancestors":[{"relation_name":"is_a","term_name":"preribosome","termid":"GO:0030684"}],"gene_count":26,"genes_by_uniquename":{"SJAG_00271":null,"SJAG_00311":null,"SJAG_00689":null,"SJAG_00722":null,"SJAG_00882":null,"SJAG_01275":null,"SJAG_01454":null,"SJAG_01494":null,"SJAG_01606":null,"SJAG_01811":null,"SJAG_01839":null,"SJAG_02427":null,"SJAG_02436":null,"SJAG_02644":null,"SJAG_02759":null,"SJAG_02830":null,"SJAG_03413":null,"SJAG_03466":null,"SJAG_03697":null,"SJAG_03719":null,"SJAG_04330":null,"SJAG_04346":null,"SJAG_04395":null,"SJAG_04491":null,"SJAG_04492":null,"SJAG_04992":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0030684"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0030684"],"is_obsolete":false,"name":"preribosome, large subunit precursor","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null},"synonyms":[{"name":"66S preribosome","type":"narrow"}],"termid":"GO:0030687","terms_by_termid":{"GO:0030687":null,"GO:0030690":null,"GO:0030691":null}}


id: MONDO:1010825
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Syndactyly that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndactyly, non-human animal","termid":"MONDO:1010160"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syndactyly, dog","secondary_identifiers":["OMIA:000963-9615"],"termid":"MONDO:1010825","xrefs":{"Monarch":{"xref_id":"1010825"}}}


id: GO:0072535
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of tumor necrosis factor superfamily member 11 (TNFSF11; RANKL) due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:mah","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tumor necrosis factor superfamily cytokine production","termid":"GO:0071706"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"tumor necrosis factor (ligand) superfamily member 11 production","synonyms":[{"name":"RANKL production","type":"exact"},{"name":"TNFSF11 production","type":"exact"},{"name":"tumor necrosis factor ligand superfamily member 11 production","type":"exact"}],"termid":"GO:0072535"}


id: PBO:0113359
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein required for sporulation; localizes to the peroxisome","termid":"PBO:0113359"}


id: GO:0048697
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of collateral sprouting in the absence of injury.","definition_xrefs":["GOC:jid","GOC:dgh","GOC:lm","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of collateral sprouting","termid":"GO:0048672"},{"relation_name":"is_a","term_name":"regulation of collateral sprouting in absence of injury","termid":"GO:0048696"},{"relation_name":"positively_regulates","term_name":"collateral sprouting in absence of injury","termid":"GO:0048669"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of collateral sprouting in absence of injury","synonyms":[{"name":"activation of collateral sprouting in the absence of injury","type":"narrow"},{"name":"stimulation of collateral sprouting in the absence of injury","type":"narrow"},{"name":"up regulation of collateral sprouting in the absence of injury","type":"exact"},{"name":"up-regulation of collateral sprouting in the absence of injury","type":"exact"},{"name":"upregulation of collateral sprouting in the absence of injury","type":"exact"}],"termid":"GO:0048697"}


id: FYECO:0000122
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Any experimental condition pertaining to the duration or frequency of one or more steps in a protocol.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fission yeast phenotype condition","termid":"FYECO:0000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"grouping growth timing","termid":"FYECO:0000122"}


id: PBO:0046239
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongin C pseudogene 33","termid":"PBO:0046239"}


id: GO:0021538
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the epithalamus over time from its initial formation until its mature state. The epithalamus is the small dorsomedial area of the thalamus including the habenular nuclei and associated fiber bundles, the pineal body, and the epithelial roof of the third ventricle.","definition_xrefs":["GOC:cls","GOC:dgh","GOC:dph","GOC:jid","ISBN:0838580343","GO_REF:0000021"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"diencephalon development","termid":"GO:0021536"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epithalamus development","termid":"GO:0021538"}


id: MONDO:0005271
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An immune response that occurs following re-exposure to an innocuous antigen, and that requires the presence of existing antibodies against that antigen. This response involves the binding of IgE to mast cells, and may worsen with repeated exposures.","definition_xrefs":["NCIT:C114476"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hypersensitivity reaction disease","termid":"MONDO:0000605"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"allergic disease","secondary_identifiers":["DOID:1205","MESH:D006967","ICD9:995.3","ICD9:V15.09","MEDGEN:9370","SCTID:609328004","UMLS:C0020517"],"synonyms":[{"name":"allergic disease or disorder","type":"exact"},{"name":"allergic form of disease or disorder","type":"exact"},{"name":"allergic form of immune system disease","type":"exact"},{"name":"allergic hypersensitivity disease","type":"related"},{"name":"allergic reaction","type":"exact"},{"name":"allergic response","type":"exact"},{"name":"allergy","type":"exact"},{"name":"disorder of type I hypersensitivity","type":"exact"},{"name":"hypersensitivity","type":"related"},{"name":"hypersensitivity reaction type I disease","type":"exact"},{"name":"type I hypersensitivity disease","type":"exact"}],"termid":"MONDO:0005271","xrefs":{"Monarch":{"xref_id":"0005271"}}}


id: GO:0061909
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which autophagosomes, double-membraned vesicles containing cytoplasmic material, fuse with a vacuole (yeast) or lysosome (e.g. mammals and insects). In the case of yeast, inner membrane-bounded structures (autophagic bodies) appear in the vacuole. Fusion provides an acidic environment and digestive function to the interior of the autophagosome.","definition_xrefs":["PMID:28077293"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle fusion","termid":"GO:0006906"},{"relation_name":"part_of","term_name":"macroautophagy","termid":"GO:0016236"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006914"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0006810","GO:0061024","GO:0016192","GO:0008150","GO:0006914"],"is_obsolete":false,"name":"autophagosome-lysosome fusion","synonyms":[{"name":"autophagosome fusion","type":"broad"},{"name":"autophagosome-vacuole fusion","type":"exact"}],"termid":"GO:0061909"}


id: GO:0090234
data:
  {"annotated_genes":["SJAG_01837","SJAG_04638","SJAG_00718","SJAG_03048"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[118278],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905560"},{"annotations":[89973,117004,102695],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905561"}]},"cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of kinetochore assembly, the aggregation, arrangement and bonding together of a set of components to form the kinetochore, a multisubunit complex that is located at the centromeric region of DNA and provides an attachment point for the spindle microtubules.","definition_xrefs":["GOC:tb","GOC:ascb_2009","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of centromere complex assembly","termid":"GO:0090230"},{"relation_name":"is_a","term_name":"regulation of organelle assembly","termid":"GO:1902115"},{"relation_name":"regulates","term_name":"kinetochore assembly","termid":"GO:0051382"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00718":null,"SJAG_01837":null,"SJAG_03048":null,"SJAG_04638":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0065003"],"is_obsolete":false,"name":"regulation of kinetochore assembly","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:1901719"],"synonyms":[{"name":"regulation of NMS complex assembly","type":"narrow"},{"name":"regulation of chromosome-kinetochore attachment","type":"narrow"}],"termid":"GO:0090234","terms_by_termid":{"GO:1905560":null,"GO:1905561":null}}


id: PBO:0087766
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of tRNA (1-methyladenosine) methyltransferase; required, along with Gcd10p, for the modification of the adenine at position 58 in tRNAs, especially tRNAi-Met; first identified as a negative regulator of GCN4 expression","termid":"PBO:0087766"}


id: PBO:0117440
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pheromone-MAPK scaffold Sms1","termid":"PBO:0117440"}


id: PBO:0085543
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein component of the small (40S) ribosomal subunit; least basic of non-acidic ribosomal proteins; phosphorylated in vivo; essential for viability; homologous to mammalian ribosomal protein S5 and bacterial S7","termid":"PBO:0085543"}


id: PBO:0018065
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial thiamine pyrophosphate transmembrane transporter (predicted)","termid":"PBO:0018065"}


id: MONDO:0010564
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Deuteranopia is a type of color vision deficiency where the green photoreceptors are absent. It affects hue discrimination in the same way as protanopia, but without the dimming effect. Like protanopia, it is hereditary, sex-linked, and found in about 1% of the male population.","definition_xrefs":["EFO:0005581"],"direct_ancestors":[{"relation_name":"is_a","term_name":"colorblindness, partial","termid":"MONDO:0000014"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"red-green color blindness","secondary_identifiers":["DOID:13909","OMIM:303800","ICD10CM:H53.53","ICD9:368.52","UMLS:C0155016","Orphanet:319698","MEDGEN:102324","SCTID:77479002"],"synonyms":[{"name":"CBD","type":"related"},{"name":"Deutan colorblindness","type":"related"},{"name":"Deutan defect","type":"exact"},{"name":"Deuteranomaly","type":"related"},{"name":"Green colorblindness","type":"related"},{"name":"colorblindness, deutan","type":"exact"},{"name":"colorblindness, partial, DEUTAN series","type":"related"},{"name":"deuteranopia","type":"exact"},{"name":"partial achromatopsia, deutan type","type":"exact"},{"name":"reduced red-green discrimination","type":"exact"}],"termid":"MONDO:0010564","xrefs":{"Monarch":{"xref_id":"0010564"}}}


id: PBO:0055837
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich alpha-2-glycoprotein 1","termid":"PBO:0055837"}


id: PBO:0053198
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lymphatic endothelial transcriptional regulator lncRNA 1","termid":"PBO:0053198"}


id: GO:0070888
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an E-box, a DNA motif with the consensus sequence CANNTG that is found in the promoters of a wide array of genes expressed in neurons, muscle and other tissues.","definition_xrefs":["GOC:BHF","GOC:vk","PMID:11812799"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II cis-regulatory region sequence-specific DNA binding","termid":"GO:0000978"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003677"},{"rel_name":"is_a","termid":"GO:0000976"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0000976","GO:0003677","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"E-box binding","synonyms":[{"name":"E-box promoter binding","type":"exact"}],"termid":"GO:0070888"}


id: PBO:0048014
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FERM and PDZ domain containing 2B, pseudogene","termid":"PBO:0048014"}


id: PBO:0006201
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-indirectly_localizes","termid":"PBO:0006201"}


id: GO:0007150
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process whereby cells develop a specific morphology under a specific set of circumstances.","definition_xrefs":["GOC:jid"],"gene_count":0,"genotype_count":0,"name":"obsolete growth pattern (obsolete GO:0007150)","synonyms":[{"name":"growth pattern","type":"exact"}],"termid":"GO:0007150"}


id: PBO:0080919
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"YWHAQ pseudogene 8","termid":"PBO:0080919"}


id: PBO:0028655
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_snRNA_3'-end_processing","termid":"PBO:0028655"}


id: GO:0160010
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + N6-(2-hydroxyisobutanoyl)-L-lysyl-[protein] = 2-hydroxy-2-methylpropanoate + L-lysyl-[protein].","definition_xrefs":["PMID:29192674"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0016810","GO:0003824"],"is_obsolete":false,"name":"protein de-2-hydroxyisobutyrylase activity","secondary_identifiers":["RHEA:69176"],"termid":"GO:0160010"}


id: PBO:0005111
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centrin","termid":"PBO:0005111"}


id: GO:0042730
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that solubilizes fibrin in the bloodstream of a multicellular organism, chiefly by the proteolytic action of plasmin.","definition_xrefs":["GOC:jl","PMID:15842654"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of blood coagulation","termid":"GO:0030195"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"fibrinolysis","secondary_identifiers":["Wikipedia:Fibrinolysis","Reactome:R-HSA-75205"],"termid":"GO:0042730"}


id: PBO:0082345
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent Lon protease; involved in degradation of misfolded mitochondrial proteins; required for mitochondrial maintenance and biogenesis; regulates mitochondrial DNA copy number with Mrx6p; subunit of a complex containing Mrx6p, Pet20p, and Mam33p that may regulate mtDNA replication; protease-independent, chaperone-like function in mitochondrial membrane complex assembly; localizes to the mitochondrial matrix","termid":"PBO:0082345"}


id: PBO:0061098
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuroligin 2","termid":"PBO:0061098"}


id: GO:0097260
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: leukotriene A4 = eoxin A4.","definition_xrefs":["GOC:mw","PMID:18184802","PMID:18647347"],"gene_count":0,"genotype_count":0,"name":"obsolete eoxin A4 synthase activity (obsolete GO:0097260)","secondary_identifiers":["Reactome:R-HSA-2162019"],"termid":"GO:0097260"}


id: PBO:0111775
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial carrier","termid":"PBO:0111775"}


id: PBO:0109385
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed transcript, Y-linked 16","termid":"PBO:0109385"}


id: GO:0002107
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The removal of extra uridine residues from the 3' end of a 5S pre-rRNA generated by transcription by RNA polymerase III to generate the mature 3'-end.","definition_xrefs":["PMID:16387655","PMID:1748637","GOC:hjd","PMID:8389357","PMID:1902221"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maturation of 5S rRNA","termid":"GO:0000481"},{"relation_name":"is_a","term_name":"rRNA 3'-end processing","termid":"GO:0031125"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0042254"}],"interesting_parent_ids":["GO:0010467","GO:0042254","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"generation of mature 3'-end of 5S rRNA generated by RNA polymerase III","termid":"GO:0002107"}


id: MONDO:1011187
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Scoliosis that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"scoliosis, non-human animal","termid":"MONDO:1010302"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"scoliosis, dog","secondary_identifiers":["OMIA:000891-9615"],"termid":"MONDO:1011187","xrefs":{"Monarch":{"xref_id":"1011187"}}}


id: MONDO:1012539
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hypomyelinating leukodystrophy, non-human animal","termid":"MONDO:1011898"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypomyelinating leukodystrophy, dog","secondary_identifiers":["OMIA:002321-9615"],"termid":"MONDO:1012539","xrefs":{"Monarch":{"xref_id":"1012539"}}}


id: GO:0009744
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to disaccharide","termid":"GO:0034285"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to sucrose","synonyms":[{"name":"response to sucrose stimulus","type":"exact"}],"termid":"GO:0009744"}


id: PBO:0052529
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kallikrein related peptidase 2","termid":"PBO:0052529"}


id: MONDO:0003124
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A sex cord-stromal tumor that arises from the testis and is characterized by the presence of cells that resemble the successive stages of development of Leydig cells. It usually presents as a painless testicular mass. Gynecomastia is present in approximately thirty percent of the cases. Libido may be decreased. In children, precocious puberty may be present. A minority of cases exhibit malignant characteristics.","definition_xrefs":["NCIT:C6356"],"direct_ancestors":[{"relation_name":"is_a","term_name":"testicular sex cord-stromal neoplasm","termid":"MONDO:0003125"},{"relation_name":"is_a","term_name":"Leydig cell tumor","termid":"MONDO:0006266"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testicular Leydig cell tumor","secondary_identifiers":["DOID:4756","UMLS:C0863027","MEDGEN:163584","SCTID:67871000119105"],"synonyms":[{"name":"Leydig cell neoplasm of testis","type":"exact"},{"name":"Leydig cell neoplasm of the testis","type":"exact"},{"name":"Leydig cell tumor of testis","type":"exact"},{"name":"Leydig cell tumor of the testis","type":"related"},{"name":"Leydig cell tumour of testis","type":"exact"},{"name":"Leydig cell tumour of the testis","type":"related"},{"name":"testicular Leydig cell neoplasm","type":"exact"},{"name":"testicular Leydig cell tumor","type":"exact"},{"name":"testis Leydig cell tumor","type":"exact"},{"name":"testis Leydig cell tumour","type":"exact"}],"termid":"MONDO:0003124","xrefs":{"Monarch":{"xref_id":"0003124"}}}


id: GO:0036444
data:
  {"annotated_genes":["SJAG_03399"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97672],"is_not":false,"summary":null,"term":"GO:0036444"}]},"cv_name":"biological_process","definition":"A process in which a calcium ion (Ca2+) is transported from the cytosol into the mitochondrial matrix.","definition_xrefs":["GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial calcium ion transmembrane transport","termid":"GO:0006851"},{"relation_name":"is_a","term_name":"import into the mitochondrion","termid":"GO:0170036"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03399":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"calcium import into the mitochondrion","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"calcium ion import into mitochondrion","type":"broad"},{"name":"calcium ion transmembrane import into mitochondrion","type":"exact"},{"name":"mitochondrial calcium ion import","type":"broad"},{"name":"mitochondrial calcium uptake","type":"exact"}],"termid":"GO:0036444","terms_by_termid":{"GO:0036444":null}}


id: PBO:0054341
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1734","termid":"PBO:0054341"}


id: GO:0047533
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2,5-dioxopentanoate + NADP+ + H2O = 2-oxoglutarate + NADPH + H+.","definition_xrefs":["EC:1.2.1.26","MetaCyc:25-DIOXOVALERATE-DEHYDROGENASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor","termid":"GO:0016620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"2,5-dioxovalerate dehydrogenase (NADP+) activity","secondary_identifiers":["RHEA:11296"],"synonyms":[{"name":"2,5-dioxopentanoate:NADP+ 5-oxidoreductase activity","type":"related"},{"name":"2-oxoglutarate semialdehyde dehydrogenase activity","type":"related"},{"name":"alpha-ketoglutaric semialdehyde dehydrogenase activity","type":"related"}],"termid":"GO:0047533"}


id: MONDO:0030073
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A peroxisomal disease characterized by progressive episodic demyelination, sensorimotor polyneuropathy, and hearing loss that has material basis in heterozygous mutation in the ACOX1 gene on chromosome 17q25.1.","definition_xrefs":["DOID:0070516"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disorder of defective peroxisome oxidative status","termid":"MONDO:0100306"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019053"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0019053"],"is_obsolete":false,"name":"Mitchell syndrome","secondary_identifiers":["MEDGEN:1714342","Orphanet:631248","UMLS:C5394554","OMIM:618960"],"synonyms":[{"name":"ACOX1 upregulation","type":"exact"},{"name":"MITCH","type":"exact"},{"name":"Mitchell syndrome","type":"exact"}],"termid":"MONDO:0030073","xrefs":{"Monarch":{"xref_id":"0030073"}}}


id: FYPO:0007974
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A microtubule cytoskeleton organization phenotype observed during mitotic anaphase B in which interpolar microtubule polymerization occurs at a higher rate, or speed, than normal for microtubules with their plus ends inside the nuclear membrane bridge formed during mitotic anaphase B.","definition_xrefs":["PMID:35293864","PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased rate of interpolar microtubule polymerization during mitotic anaphase B","termid":"FYPO:0007971"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000054"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000054","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased rate of interpolar microtubule polymerization inside the mitotic nuclear membrane bridge","termid":"FYPO:0007974"}


id: MONDO:0009616
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Microcephalic primordial dwarfism, Toriello type is characterized by growth retardation with prenatal onset, cataracts, microcephaly, intellectual deficit, immune deficiency, delayed ossification and enamel hypoplasia. It has been described in two siblings. Transmission is autosomal recessive.","definition_xrefs":["Orphanet:2643"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"primordial dwarfism and slender bone disorder","termid":"MONDO:0800063"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microcephalic primordial dwarfism, Toriello type","secondary_identifiers":["OMIM:251190","GARD:3602","SCTID:715482004","UMLS:C1855089","icd11.foundation:279033035","MESH:C537321","MEDGEN:381556"],"synonyms":[{"name":"microcephalic primordial dwarfism Toriello type","type":"related"},{"name":"microcephalic primordial dwarfism and cataracts","type":"related"},{"name":"microcephalic primordial dwarfism, Toriello type","type":"exact"}],"termid":"MONDO:0009616","xrefs":{"Monarch":{"xref_id":"0009616"}}}


id: GO:0002599
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of antigen processing and presentation of lipid antigen via MHC class Ib.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of antigen processing and presentation via MHC class Ib","termid":"GO:0002593"},{"relation_name":"is_a","term_name":"regulation of antigen processing and presentation of lipid antigen via MHC class Ib","termid":"GO:0002598"},{"relation_name":"negatively_regulates","term_name":"antigen processing and presentation of lipid antigen via MHC class Ib","termid":"GO:0048003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of antigen processing and presentation of lipid antigen via MHC class Ib","synonyms":[{"name":"down regulation of antigen processing and presentation of lipid antigen via MHC class Ib","type":"exact"},{"name":"down-regulation of antigen processing and presentation of lipid antigen via MHC class Ib","type":"exact"},{"name":"downregulation of antigen processing and presentation of lipid antigen via MHC class Ib","type":"exact"},{"name":"inhibition of antigen processing and presentation of lipid antigen via MHC class Ib","type":"narrow"},{"name":"negative regulation of lipid antigen processing and presentation via MHC class Ib","type":"exact"}],"termid":"GO:0002599"}


id: PBO:0044033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CSPG4 pseudogene 2 Y-linked","termid":"PBO:0044033"}


id: MONDO:0800480
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neurodevelopmental disorder characterized by core deficits in visual-spatial processing and a significant discrepancy between verbal and nonverbal intelligence (where verbal intelligence is higher).","direct_ancestors":[{"relation_name":"is_a","term_name":"specific learning disability","termid":"MONDO:0016225"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-verbal learning disability","secondary_identifiers":["MEDGEN:752350","UMLS:C2732653"],"synonyms":[{"name":"non-verbal learning disorder","type":"exact"}],"termid":"MONDO:0800480","xrefs":{"Monarch":{"xref_id":"0800480"}}}


id: PBO:0078136
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha variable 15 (pseudogene)","termid":"PBO:0078136"}


id: PBO:0078870
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transient receptor potential cation channel subfamily M member 4","termid":"PBO:0078870"}


id: GO:0008454
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + (N-acetyl-beta-D-glucosaminyl-1,2)-alpha-D-mannosyl-1,3-(beta-N-acetyl-D-glucosaminyl-1,2-alpha-D-mannosyl-1,6)-beta-D-mannosyl-R = UDP + N-acetyl-beta-D-glucosaminyl-1,4-(N-acetyl-D-glucosaminyl-1,2)-alpha-D-mannosyl-1,3-(beta-N-acetyl-D-glucosaminyl-1,2-alpha-D-mannosyl-1,6)-beta-D-mannosyl-R.","definition_xrefs":["EC:2.4.1.145"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylglucosaminyltransferase activity","termid":"GO:0008375"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a glycoprotein","termid":"GO:0140103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0003674","GO:0016757","GO:0016740","GO:0140096","GO:0003824"],"is_obsolete":false,"name":"alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity","secondary_identifiers":["MetaCyc:2.4.1.145-RXN","RHEA:16057","Reactome:R-HSA-9696980","Reactome:R-HSA-975903"],"synonyms":[{"name":"GnTIV activity","type":"related"},{"name":"N-acetylglucosaminyltransferase IV activity","type":"related"},{"name":"N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase IV activity","type":"related"},{"name":"UDP-N-acetyl-D-glucosamine:3-[2-(N-acetyl-beta-D-glucosaminyl)-alpha-D-mannosyl]-glycoprotein 4-beta-N-acetyl-D-glucosaminyltransferase activity","type":"related"},{"name":"alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase activity","type":"related"},{"name":"alpha-1,3-mannosylglycoprotein beta-1,4-N-acetylglucosaminyltransferase activity","type":"exact"},{"name":"beta-acetylglucosaminyltransferase IV activity","type":"related"},{"name":"uridine diphosphoacetylglucosamine-glycopeptide beta-4-acetylglucosaminyltransferase IV activity","type":"related"},{"name":"uridine diphosphoacetylglucosamine-glycopeptide beta4-acetylglucosaminyltransferase IV","type":"related"}],"termid":"GO:0008454"}


id: PBO:0064512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase II subunit J4, pseudogene","termid":"PBO:0064512"}


id: GO:0120189
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the controlled release of bile acid from a cell or a tissue.","definition_xrefs":["GOC:rph","PMID:22767443","GOC:BHF","GOC:BHF_miRNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of organic acid transport","termid":"GO:0032892"},{"relation_name":"is_a","term_name":"positive regulation of secretion","termid":"GO:0051047"},{"relation_name":"is_a","term_name":"regulation of bile acid secretion","termid":"GO:0120188"},{"relation_name":"positively_regulates","term_name":"bile acid secretion","termid":"GO:0032782"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of bile acid secretion","termid":"GO:0120189"}


id: MOD:01528
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom of a residue with the Applied Biosystems iTRAQ8plex-113 reporter+balance group.","definition_xrefs":["Unimod:730"],"direct_ancestors":[{"relation_name":"is_a","term_name":"(13)C isotope tagged reagent","termid":"MOD:01428"},{"relation_name":"is_a","term_name":"(15)N isotope tagged reagent","termid":"MOD:01429"},{"relation_name":"is_a","term_name":"iTRAQ8plex reporter+balance reagent acylated residue","termid":"MOD:01526"},{"relation_name":"is_a","term_name":"modifications with monoisotopic mass differences that are nominally equal at 304.205359 Da","termid":"MOD:01591"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iTRAQ8plex-113 reporter+balance reagent acylated residue","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"Applied Biosystems iTRAQ(TM) multiplexed quantitation chemistry","type":"related"},{"name":"Representative mass and accurate mass for 113, 114, 116 & 117","type":"related"},{"name":"iTRAQ8plex","type":"related"},{"name":"iTRAQ8plex:13C(7)15N(1)","type":"related"}],"termid":"MOD:01528"}


id: PBO:0060474
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nanog homeobox","termid":"PBO:0060474"}


id: GO:1990397
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process which produces queuosine from derivatives of it, without de novo synthesis.","definition_xrefs":["PMID:24911101","GOC:vw"],"gene_count":0,"genotype_count":0,"name":"obsolete queuosine salvage (obsolete GO:1990397)","termid":"GO:1990397"}


id: MONDO:0007487
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dyslexia, susceptibility to, 1","secondary_identifiers":["MEDGEN:338828","OMIM:127700","UMLS:C1851967"],"synonyms":[{"name":"DYX1","type":"related"},{"name":"Word-blindness, congenital","type":"related"},{"name":"dyslexia, susceptibility to, 1","type":"exact"},{"name":"dyslexia, susceptibility to, 4","type":"related"},{"name":"dyslexia, susceptibility to, 7","type":"related"},{"name":"dyslexia, susceptibility to, type 1","type":"exact"},{"name":"reading disability, specific, 1","type":"related"},{"name":"susceptibility to dyslexia 1","type":"related"}],"termid":"MONDO:0007487","xrefs":{"Monarch":{"xref_id":"0007487"}}}


id: PBO:0055453
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2885","termid":"PBO:0055453"}


id: PBO:0087571
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of TFIIH and nucleotide excision repair factor 3 complexes; required for nucleotide excision repair, target for transcriptional activators; relocalizes to the cytosol in response to hypoxia","termid":"PBO:0087571"}


id: GO:1905635
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a FACT complex.","definition_xrefs":["GO_REF:0000079","PMID:20889714","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0065003","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"FACT complex assembly","synonyms":[{"name":"FACT complex formation","type":"exact"},{"name":"Facilitates chromatin transcription complex assembly","type":"exact"},{"name":"Facilitates chromatin transcription complex formation","type":"exact"}],"termid":"GO:1905635"}


id: GO:0016166
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the dehydrogenation of phytoene to produce a carotenoid intermediate such as phytofluene.","definition_xrefs":["PMID:29176862"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors","termid":"GO:0016627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"phytoene dehydrogenase activity","termid":"GO:0016166"}


id: FYPO:0005949
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin regions where RNA polymerase II actively transcribes genes is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PMID:28218250","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to chromatin at RNA polymerase II-transcribed genes during vegetative growth","termid":"FYPO:0007536"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000138","FYPO:0001312","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"normal protein localization to chromatin at highly transcribed RNA polymerase II genes during vegetative growth","synonyms":[{"name":"normal protein localisation to chromatin at highly transcribed RNA polymerase II genes during vegetative growth","type":"exact"},{"name":"normal protein localization to chromatin at highly transcribed RNA polymerase II genes during mitotic cell cycle","type":"related"},{"name":"normal protein localization to chromatin at polymerase II highly transcribed genes during vegetative growth","type":"exact"}],"termid":"FYPO:0005949"}


id: PBO:0076682
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription elongation factor A like 1","termid":"PBO:0076682"}


id: PBO:0067013
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 22, pseudogene","termid":"PBO:0067013"}


id: GO:0042437
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of indole-3-acetic acid, a compound which functions as a growth regulator in plants.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"indoleacetic acid metabolic process","termid":"GO:0009683"},{"relation_name":"is_a","term_name":"auxin catabolic process","termid":"GO:0009852"},{"relation_name":"is_a","term_name":"indole-containing compound catabolic process","termid":"GO:0042436"},{"relation_name":"is_a","term_name":"monocarboxylic acid catabolic process","termid":"GO:0072329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"indoleacetic acid catabolic process","synonyms":[{"name":"IAA catabolic process","type":"exact"},{"name":"indole acetic acid catabolic process","type":"exact"},{"name":"indole acetic acid catabolism","type":"exact"},{"name":"indoleacetic acid breakdown","type":"exact"},{"name":"indoleacetic acid catabolism","type":"exact"},{"name":"indoleacetic acid degradation","type":"exact"}],"termid":"GO:0042437"}


id: PBO:0050959
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interferon lambda 2","termid":"PBO:0050959"}


id: GO:0044726
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The global programming of epigenetic modifications in the female pronucleus of the newly fertilized zygote. The maternal genome is protected from global DNA demethylation before the first division of the zygote, and instead undergoes passive, replication-dependent demethylation during early embryogenesis, arising from inhibition of the DNA maintenance methyltransferase Dnmt1.","definition_xrefs":["GOC:sp","PMID:22868271"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epigenetic programming in the zygotic pronuclei","termid":"GO:0044725"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0006325"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006325","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"epigenetic programing of female pronucleus","synonyms":[{"name":"maintenance of DNA methylation at imprinted genes","type":"related"},{"name":"protection of DNA demethylation of female pronucleus","type":"narrow"},{"name":"protection of DNA methylation in female pronucleus","type":"narrow"}],"termid":"GO:0044726"}


id: PBO:0078112
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha variable 1-2","termid":"PBO:0078112"}


id: PBO:0109051
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MSL3 pseudogene 2","termid":"PBO:0109051"}


id: PBO:0081038
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger CCCH-type containing 14","termid":"PBO:0081038"}


id: PBO:0003158
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenosine deaminase Ada1 (predicted)","termid":"PBO:0003158"}


id: PBO:0005013
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-1,2-mannosyltransferase Alg11","termid":"PBO:0005013"}


id: GO:1900691
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of gliotoxin biosynthetic process.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of amide metabolic process","termid":"GO:0034250"},{"relation_name":"is_a","term_name":"positive regulation of sulfur metabolic process","termid":"GO:0051176"},{"relation_name":"is_a","term_name":"positive regulation of secondary metabolite biosynthetic process","termid":"GO:1900378"},{"relation_name":"is_a","term_name":"regulation of gliotoxin biosynthetic process","termid":"GO:1900689"},{"relation_name":"positively_regulates","term_name":"gliotoxin biosynthetic process","termid":"GO:2001310"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0019748"},{"rel_name":"regulates","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006790"},{"rel_name":"regulates","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0006790","GO:0019748"],"is_obsolete":false,"name":"positive regulation of gliotoxin biosynthetic process","synonyms":[{"name":"activation of gliotoxin anabolism","type":"exact"},{"name":"activation of gliotoxin biosynthesis","type":"exact"},{"name":"activation of gliotoxin biosynthetic process","type":"narrow"},{"name":"activation of gliotoxin formation","type":"exact"},{"name":"activation of gliotoxin synthesis","type":"exact"},{"name":"positive regulation of gliotoxin anabolism","type":"exact"},{"name":"positive regulation of gliotoxin biosynthesis","type":"exact"},{"name":"positive regulation of gliotoxin formation","type":"exact"},{"name":"positive regulation of gliotoxin synthesis","type":"exact"},{"name":"up regulation of gliotoxin anabolism","type":"exact"},{"name":"up regulation of gliotoxin biosynthesis","type":"exact"},{"name":"up regulation of gliotoxin biosynthetic process","type":"exact"},{"name":"up regulation of gliotoxin formation","type":"exact"},{"name":"up regulation of gliotoxin synthesis","type":"exact"},{"name":"up-regulation of gliotoxin anabolism","type":"exact"},{"name":"up-regulation of gliotoxin biosynthesis","type":"exact"},{"name":"up-regulation of gliotoxin biosynthetic process","type":"exact"},{"name":"up-regulation of gliotoxin formation","type":"exact"},{"name":"up-regulation of gliotoxin synthesis","type":"exact"},{"name":"upregulation of gliotoxin anabolism","type":"exact"},{"name":"upregulation of gliotoxin biosynthesis","type":"exact"},{"name":"upregulation of gliotoxin biosynthetic process","type":"exact"},{"name":"upregulation of gliotoxin formation","type":"exact"},{"name":"upregulation of gliotoxin synthesis","type":"exact"}],"termid":"GO:1900691"}


id: MONDO:0850058
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Niemann-Pick disease","termid":"MONDO:0001982"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0002561"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0002561","MONDO:0005066","MONDO:0002525","MONDO:0005046"],"is_obsolete":false,"name":"chronic neurovisceral acid sphingomyelinase deficiency","secondary_identifiers":["Orphanet:618891","MEDGEN:1842316","GARD:22456","UMLS:C5539139"],"termid":"MONDO:0850058","xrefs":{"Monarch":{"xref_id":"0850058"}}}


id: PBO:0030637
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_ATPase_activity","termid":"PBO:0030637"}


id: GO:0046509
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1,2-diacyl-sn-glycerol + UDP-D-galactose = 1,2-diacyl-3-beta-D-galactosyl-sn-glycerol + H+ + UDP.","definition_xrefs":["EC:2.4.1.46","RHEA:14945"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-galactosyltransferase activity","termid":"GO:0035250"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016757","GO:0016740"],"is_obsolete":false,"name":"1,2-diacylglycerol 3-beta-galactosyltransferase activity","secondary_identifiers":["KEGG_REACTION:R02691","MetaCyc:2.4.1.46-RXN"],"synonyms":[{"name":"1-beta-MGDG activity","type":"related"},{"name":"1beta-MGDG","type":"related"},{"name":"MGDG synthase activity","type":"exact"},{"name":"UDP galactose-1,2-diacylglycerol galactosyltransferase activity","type":"exact"},{"name":"UDP-galactose-diacylglyceride galactosyltransferase activity","type":"exact"},{"name":"UDP-galactose:1,2-diacyl-sn-glycerol 3-beta-D-galactosyltransferase activity","type":"related"},{"name":"UDP-galactose:diacylglycerol galactosyltransferase activity","type":"exact"},{"name":"UDPgalactose:1,2-diacylglycerol 3-beta-D-galactosyltransferase activity","type":"related"},{"name":"monogalactosyldiacylglycerol synthase activity","type":"exact"},{"name":"uridine diphosphogalactose-1,2-diacylglycerol galactosyltransferase activity","type":"exact"}],"termid":"GO:0046509"}


id: PBO:0066752
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 50","termid":"PBO:0066752"}


id: PBO:0040769
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BEN domain containing 4","termid":"PBO:0040769"}


id: PBO:0065633
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PTPN11 pseudogene 2","termid":"PBO:0065633"}


id: PBO:0090047
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone deacetylase complex PHD finger subunit Cti6","termid":"PBO:0090047"}


id: GO:1900317
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of maltopentaose transport.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of maltopentaose transport","termid":"GO:1900315"},{"relation_name":"is_a","term_name":"positive regulation of pentasaccharide transport","termid":"GO:1900362"},{"relation_name":"positively_regulates","term_name":"maltopentaose transport","termid":"GO:2001101"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of maltopentaose transport","synonyms":[{"name":"activation of maltopentaose transport","type":"narrow"},{"name":"up regulation of maltopentaose transport","type":"exact"},{"name":"up-regulation of maltopentaose transport","type":"exact"},{"name":"upregulation of maltopentaose transport","type":"exact"}],"termid":"GO:1900317"}


id: PBO:0084133
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hexose transporter with moderate affinity for glucose; induced in the presence of non-fermentable carbon sources, induced by a decrease in growth rate, contains an extended N-terminal domain relative to other HXTs; HXT5 has a paralog, HXT3, that arose from the whole genome duplication","termid":"PBO:0084133"}


id: GO:0141145
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont inhibits or disrupts the formation of neutrophil extracellular traps by the host cell. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:30038902","PMID:34108482"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host cellular process","termid":"GO:0044068"},{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host defense response","termid":"GO:0052031"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated suppression of host neutrophil extracellular trap formation","synonyms":[{"name":"symbiont-mediated perturbation of host neutrophil extracellular trap formation","type":"related"},{"name":"symbiont-mediated suppression of host neutrophil extracellular traps formation","type":"exact"}],"termid":"GO:0141145"}


id: MONDO:0021690
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A rare congenital non-syndromic heart malformation characterized by a bulging of the left ventricular wall, connected to the left ventricle by a wide neck (with a ratio of the connection to the body of the anomaly >1). The dimensions of described aneurysms range from 0.5 cm in diameter up to a size of 8x9 cm. Most frequent locations are the left ventricular apex and the perivalvular area. Aneurysms can be a- or dyskinetic or show almost normal contractility. Patients may remain asymptomatic or present with systemic embolization, congestive heart failure, valvular regurgitation, ventricular wall rupture, ventricular tachycardia, or sudden cardiac death. [Orphanet:1055]","definition_xrefs":["Orphanet:1055"],"gene_count":0,"genotype_count":0,"name":"obsolete congenital left ventricular aneurysm (obsolete MONDO:0021690)","secondary_identifiers":["ICD10CM:Q24.8"],"termid":"MONDO:0021690","xrefs":{"Monarch":{"xref_id":"0021690"}}}


id: GO:0030570
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a pectate = a pectate + a pectate oligosaccharide with 4-(4-deoxy-alpha-D-galact-4-enuronosyl)-D-galacturonate end. This reaction is the eliminative cleavage of pectate to give oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends.","definition_xrefs":["EC:4.2.2.2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on polysaccharides","termid":"GO:0016837"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829"],"is_obsolete":false,"name":"pectate lyase activity","secondary_identifiers":["MetaCyc:4.2.2.2-RXN"],"synonyms":[{"name":"(1->4)-alpha-D-galacturonan lyase activity","type":"related"},{"name":"PGA lyase activity","type":"related"},{"name":"PPase-N activity","type":"related"},{"name":"alpha-1,4-D-endopolygalacturonic acid lyase activity","type":"related"},{"name":"endo-alpha-1,4-polygalacturonic acid lyase activity","type":"related"},{"name":"endogalacturonate transeliminase activity","type":"related"},{"name":"endopectin methyltranseliminase activity","type":"related"},{"name":"pectate transeliminase activity","type":"related"},{"name":"pectic acid lyase activity","type":"related"},{"name":"pectic acid transeliminase activity","type":"related"},{"name":"pectic lyase activity","type":"broad"},{"name":"pectin trans-eliminase activity","type":"broad"},{"name":"polygalacturonate lyase activity","type":"related"},{"name":"polygalacturonic acid lyase activity","type":"related"},{"name":"polygalacturonic acid trans-eliminase activity","type":"related"},{"name":"polygalacturonic transeliminase activity","type":"related"}],"termid":"GO:0030570"}


id: PR:O94733
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC191.01 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94733"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C191.01 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC191.01","synonyms":[{"name":"Spom972h-SPCC191.01","type":"exact"}],"termid":"PR:O94733"}


id: GO:0052163
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which a symbiont modulates the frequency, rate or extent of the production of nitric oxide as part of the innate immune response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete symbiont defense to host-produced nitric oxide (obsolete GO:0052163)","synonyms":[{"name":"defense response to host innate immune response nitric oxide production","type":"narrow"},{"name":"evasion or tolerance by organism of host NO","type":"exact"},{"name":"evasion or tolerance by organism of host nitric oxide","type":"exact"},{"name":"evasion or tolerance by organism of host-produced NO","type":"exact"},{"name":"evasion or tolerance by organism of host-produced nitric oxide","type":"exact"},{"name":"evasion or tolerance by organism of nitric oxide produced by other organism involved in symbiotic interaction","type":"broad"},{"name":"evasion or tolerance by symbiont of host-produced nitric oxide","type":"exact"},{"name":"evasion or tolerance of NO produced by host in response to organism","type":"exact"},{"name":"evasion or tolerance of nitric oxide produced by host in response to organism","type":"exact"},{"name":"modulation by organism of defense-related host NO production","type":"exact"},{"name":"modulation by organism of defense-related nitric oxide production in other organism involved in symbiotic interaction","type":"broad"},{"name":"modulation by symbiont of defense-related host nitric oxide production","type":"related"},{"name":"response to defense-related host nitric oxide production","type":"related"},{"name":"response to defense-related nitric oxide production by other organism involved in symbiotic interaction","type":"broad"}],"termid":"GO:0052163"}


id: GO:1990853
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H2A by the addition of an phosphate group to the serine residue in the SQE motif of the histone.","definition_xrefs":["PMID:15226425","DOI:10.1038/35052000"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H2A SQE motif phosphorylation (obsolete GO:1990853)","termid":"GO:1990853"}


id: PBO:0117433
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zDHHC palmitoyltransferase 24","termid":"PBO:0117433"}


id: FYPO:0002904
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a cell is inviable and shaped in the form of a pear in the vegetative growth phase of the life cycle. One end is rounded, while the other resembles an end of a normal rod-shaped cell. The normally shaped end has the same diameter as a wild-type cell.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"pear-shaped cell","termid":"FYPO:0000020"},{"relation_name":"is_a","term_name":"pear-shaped vegetative cell","termid":"FYPO:0001120"},{"relation_name":"is_a","term_name":"inviable vegetative cell with abnormal cell shape","termid":"FYPO:0002451"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000005","FYPO:0000002","FYPO:0001320","FYPO:0000004"],"is_obsolete":false,"name":"inviable pear-shaped vegetative cell","synonyms":[{"name":"inviable ice cream cone-shaped cell during vegetative growth","type":"exact"},{"name":"inviable pear-shaped cell during vegetative growth","type":"exact"},{"name":"inviable pear-shaped vegetative cell during mitotic cell cycle","type":"related"},{"name":"lethal; pear-shaped vegetative cell","type":"exact"}],"termid":"FYPO:0002904"}


id: GO:0060443
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which anatomical structures of the mammary gland are generated and organized. Morphogenesis refers to the creation of shape. The mammary gland is a large compound sebaceous gland that in female mammals is modified to secrete milk.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gland morphogenesis","termid":"GO:0022612"},{"relation_name":"part_of","term_name":"mammary gland development","termid":"GO:0030879"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mammary gland morphogenesis","termid":"GO:0060443"}


id: MONDO:1011240
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Microphthalmia that occurs in Eastern wapiti.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microphthalmia, non-human animal","termid":"MONDO:1010324"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microphthalmia, Eastern wapiti","secondary_identifiers":["OMIA:000649-9861"],"termid":"MONDO:1011240","xrefs":{"Monarch":{"xref_id":"1011240"}}}


id: GO:0060927
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The commitment of cells to pacemaker cell fates and their capacity to differentiate into pacemaker cells. Pacemaker cells are specialized cardiomyocytes that are responsible for regulating the timing of heart contractions.","definition_xrefs":["GOC:mtg_cardiac_conduct_nov11","GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac muscle cell fate commitment","termid":"GO:0060923"},{"relation_name":"part_of","term_name":"cardiac pacemaker cell differentiation","termid":"GO:0060920"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac pacemaker cell fate commitment","synonyms":[{"name":"pacemaker cell fate commitment","type":"broad"}],"termid":"GO:0060927"}


id: FYPO:0002415
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell is inviable, and has an abnormal shape and a larger volume than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable swollen vegetative cell","termid":"FYPO:0002414"},{"relation_name":"is_a","term_name":"inviable vegetative cell with abnormal cell shape","termid":"FYPO:0002451"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000004","FYPO:0001320","FYPO:0000002","FYPO:0000005","FYPO:0001985"],"is_obsolete":false,"name":"inviable swollen vegetative cell with abnormal cell shape","synonyms":[{"name":"inviable enlarged vegetative cell with abnormal cell shape","type":"related"},{"name":"inviable large vegetative cell with abnormal cell shape","type":"related"},{"name":"inviable swollen cell with abnormal cell shape during vegetative growth","type":"exact"},{"name":"inviable swollen misshapen vegetative cell","type":"related"},{"name":"inviable swollen vegetative cell with abnormal cell shape during mitotic cell cycle","type":"related"},{"name":"inviable vegetative cell with increased cell size and abnormal cell shape","type":"related"},{"name":"inviable vegetative cell with increased cell volume and abnormal cell shape","type":"exact"},{"name":"lethal; swollen vegetative cell with abnormal cell shape","type":"exact"}],"termid":"FYPO:0002415"}


id: GO:0003357
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of an noradrenergic neuron, a neuron that secretes noradrenaline.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron differentiation","termid":"GO:0030182"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"noradrenergic neuron differentiation","synonyms":[{"name":"norepinephrine secreting neuron differentiation","type":"exact"}],"termid":"GO:0003357"}


id: PBO:0027141
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_methyltransferase_activity","termid":"PBO:0027141"}


id: GO:0071517
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process involved in preserving the structure of a stable single-strand DNA lesion that triggers programmed gene conversion at the mating-type locus, thereby restricting mating-type interconversion to one of the two sister chromatids during DNA replication.","definition_xrefs":["PMID:14765111","PMID:18723894","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete maintenance of imprinting at mating-type locus (obsolete GO:0071517)","synonyms":[{"name":"mating type determination, maintenance of imprinting","type":"exact"}],"termid":"GO:0071517"}


id: MOD:01991
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts a glycinium (protonated glycine) residue to an N,N,N-trimethylglycine.","definition_xrefs":["PubMed:23818633","RESID:AA0619","ChEBI:17750","PubMed:23978223"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"protonated glycine (glycinium) residue","termid":"MOD:01990"},{"relation_name":"is_a","term_name":"alpha-amino trimethylated residue","termid":"MOD:01687"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"N,N,N-trimethylglycine (from glycinium)","synonyms":[{"name":"N2Me3Gly","type":"exact"}],"termid":"MOD:01991"}


id: MONDO:0019027
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A form of frontootopalatodigital syndrome, characterized by deafness, cleft palate, and characteristic digital anomalies. OPD syndrome is divided into two forms based on severity: the milder form designated OPD type 1 (OPD1), and the more severe and often lethal form designated OPD type 2 (OPD2). OPD is an X-linked disorder. Two other genetic disorders with features overlapping OPD, frontometaphyseal dysplasia (FMD) and osteodysplasty, Melnick-Needles type (MNS) have been described; thus OPD1, OPD2, FMD, and MNS are allelic disorders.","definition_xrefs":["Orphanet:669"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"},{"relation_name":"excluded_subClassOf","term_name":"obsolete branchial arch or oral-acral syndrome (obsolete MONDO:0015334)","termid":"MONDO:0015334"},{"relation_name":"excluded_subClassOf","term_name":"obsolete syndrome or malformation associated with head and neck malformations (obsolete MONDO:0015501)","termid":"MONDO:0015501"},{"relation_name":"excluded_subClassOf","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"},{"relation_name":"is_a","term_name":"otopalatodigital syndrome spectrum disorder","termid":"MONDO:0018233"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"otopalatodigital syndrome","secondary_identifiers":["icd11.foundation:1506946342","MEDGEN:1843451","GARD:7293","SCTID:767130007","UMLS:C5779873"],"synonyms":[{"name":"oto-palatal-digital syndrome","type":"exact"},{"name":"oto-palato-digital syndrome","type":"exact"},{"name":"type 2 (Andre syndrome)","type":"narrow"}],"termid":"MONDO:0019027","xrefs":{"Monarch":{"xref_id":"0019027"}}}


id: PBO:0072506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein SA pseudogene 35","termid":"PBO:0072506"}


id: GO:0009244
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of the core region of bacterial lipopolysaccharides, which contains ten saccharide residues.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligosaccharide biosynthetic process","termid":"GO:0009312"},{"relation_name":"is_a","term_name":"lipopolysaccharide core region metabolic process","termid":"GO:0046401"},{"relation_name":"part_of","term_name":"lipopolysaccharide biosynthetic process","termid":"GO:0009103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"part_of","termid":"GO:0005975"},{"rel_name":"part_of","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150","GO:0005975"],"is_obsolete":false,"name":"lipopolysaccharide core region biosynthetic process","synonyms":[{"name":"LPS core region biosynthetic process","type":"exact"},{"name":"lipopolysaccharide core region anabolism","type":"exact"},{"name":"lipopolysaccharide core region biosynthesis","type":"exact"},{"name":"lipopolysaccharide core region formation","type":"exact"},{"name":"lipopolysaccharide core region synthesis","type":"exact"}],"termid":"GO:0009244"}


id: GO:0044540
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-cystine + H2O = pyruvate + NH3 + thiocysteine. Thiocysteine is also known as cysteine persulfide.","definition_xrefs":["GOC:jl","RHEA:24927"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-sulfur lyase activity","termid":"GO:0016846"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"L-cystine L-cysteine-lyase (deaminating)","secondary_identifiers":["KEGG_REACTION:R02408","EC:4.4.1.35"],"termid":"GO:0044540"}


id: PBO:0078361
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Glu (anticodon TTC) 6-1","termid":"PBO:0078361"}


id: PBO:0002811
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ran GAP Rna1","termid":"PBO:0002811"}


id: SO:0001891
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A feature amplification of a region containing a regulatory region.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"feature_amplification","termid":"SO:0001880"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulatory_region_amplification","secondary_identifiers":["http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences"],"synonyms":[{"name":"VEP:regulatory_region_amplification","type":"exact"},{"name":"regulatory region amplification","type":"exact"}],"termid":"SO:0001891"}


id: MONDO:1010195
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Myopathy that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"musculoskeletal system disorder, non-human animal","termid":"MONDO:1011335"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myopathy, non-human animal","secondary_identifiers":["OMIA:000693"],"termid":"MONDO:1010195","xrefs":{"Monarch":{"xref_id":"1010195"}}}


id: MONDO:0013780
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A retinitis pigmentosa that has material basis in variation in the chromosome region 6q23.","definition_xrefs":["PMID:22083234","DOID:0110385"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinitis pigmentosa","termid":"MONDO:0019200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0004736","MONDO:0005066","MONDO:0005328"],"is_obsolete":false,"name":"retinitis pigmentosa 63","secondary_identifiers":["UMLS:C3281002","MEDGEN:482632","GARD:15810","ICD10CM:H35.5","OMIM:614494"],"synonyms":[{"name":"RP63","type":"exact"},{"name":"retinitis pigmentosa 63","type":"exact"},{"name":"retinitis pigmentosa type 63","type":"exact"}],"termid":"MONDO:0013780","xrefs":{"Monarch":{"xref_id":"0013780"}}}


id: PBO:0054058
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1400","termid":"PBO:0054058"}


id: PBO:0011098
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S13","termid":"PBO:0011098"}


id: PBO:0048841
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyceronephosphate O-acyltransferase","termid":"PBO:0048841"}


id: PBO:0075802
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small RNA binding exonuclease protection factor La","termid":"PBO:0075802"}


id: PBO:0065744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PYD and CARD domain containing","termid":"PBO:0065744"}


id: PATO:0002175
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A spatial quality inhering in a bearer by virtue of the bearer's changed direction of position towards another entity.","definition_xrefs":["PATO:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spatial pattern","termid":"PATO:0000060"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deviation","termid":"PATO:0002175"}


id: GO:0016080
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which synaptic vesicles are directed to specific destination membranes, mediated by molecules at the vesicle membrane and target membrane surfaces.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle targeting","termid":"GO:0006903"},{"relation_name":"is_a","term_name":"exocytic process","termid":"GO:0140029"},{"relation_name":"part_of","term_name":"synaptic vesicle exocytosis","termid":"GO:0016079"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0006810","GO:0016192","GO:0008150"],"is_obsolete":false,"name":"synaptic vesicle targeting","termid":"GO:0016080"}


id: PBO:0090363
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gamma tubulin complex GCP2 subunit Alp4","termid":"PBO:0090363"}


id: PBO:0042659
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CEA cell adhesion molecule 8","termid":"PBO:0042659"}


id: MOD:01173
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-asparagine residue to N-asparaginyl-glycosylsphingolipidinositolethanolamine.","definition_xrefs":["RESID:AA0425","PubMed:12626404"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycosylsphingolipidinositolated residue","termid":"MOD:00466"},{"relation_name":"is_a","term_name":"modified L-asparagine residue","termid":"MOD:00903"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"},{"rel_name":"is_a","termid":"MOD:01155"}],"interesting_parent_ids":["MOD:00764","MOD:01155"],"is_obsolete":false,"name":"N-asparaginyl-glycosylsphingolipidinositolethanolamine","synonyms":[{"name":"GSIAsn","type":"exact"},{"name":"LIPID GPI-like-anchor amidated asparagine","type":"exact"},{"name":"N-asparaginyl-glycosylsphingolipidinositolethanolamine","type":"exact"}],"termid":"MOD:01173"}


id: PBO:0076480
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane anterior posterior transformation 1","termid":"PBO:0076480"}


id: GO:0051428
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a receptor for a peptide hormone.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hormone receptor binding","termid":"GO:0051427"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"peptide hormone receptor binding","synonyms":[{"name":"polypeptide hormone receptor binding","type":"exact"}],"termid":"GO:0051428"}


id: MONDO:0005950
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Poisoning caused by ingestion of food harboring species of salmonella. Conditions of raising, shipping, slaughtering, and marketing of domestic animals contribute to the spread of this bacterium in the food supply.","definition_xrefs":["MESH:D012478"],"direct_ancestors":[{"relation_name":"is_a","term_name":"salmonellosis","termid":"MONDO:0000827"},{"relation_name":"is_a","term_name":"gastroenteritis","termid":"MONDO:0002269"},{"relation_name":"is_a","term_name":"digestive system infectious disorder","termid":"MONDO:0043424"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"Salmonella gastroenteritis","secondary_identifiers":["EFO:0007475","SCTID:42338000","MEDGEN:48541","UMLS:C0036114","ICD9:003.0"],"synonyms":[{"name":"Salmonella caused gastroenteritis","type":"exact"}],"termid":"MONDO:0005950","xrefs":{"Monarch":{"xref_id":"0005950"}}}


id: PBO:0034035
data:
  {"annotation_feature_type":"gene","cv_name":"pubprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pubmed_authors","termid":"PBO:0034035"}


id: PR:Q9US33
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A serine acetyltransferase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02266"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine acetyltransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1039.08","secondary_identifiers":["UniProtKB:Q9US33"],"synonyms":[{"name":"Spom972h-cysE","type":"exact"}],"termid":"PR:Q9US33"}


id: PBO:0084321
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Karyopherin beta; forms a complex with Srp1p/Kap60p; interacts with nucleoporins to mediate nuclear import of NLS-containing cargo proteins via the nuclear pore complex; regulates PC biosynthesis; GDP-to-GTP exchange factor for Gsp1p","termid":"PBO:0084321"}


id: SO:0001461
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A binding site that, in the enhancer region of a nucleotide molecule, interacts selectively and non-covalently with polypeptide residues.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide_to_protein_binding_site","termid":"SO:0001654"},{"relation_name":"part_of","term_name":"enhancer","termid":"SO:0000165"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"enhancer_binding_site","synonyms":[{"name":"enhancer binding site","type":"related"}],"termid":"SO:0001461"}


id: GO:0033187
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: ATP + 1D-myo-inositol hexakisphosphate = ADP + 4-diphospho-1D-myo-inositol (1,2,3,5,6)pentakisphosphate, and ATP + 1D-myo-inositol hexakisphosphate = ADP + 6-diphospho-1D-myo-inositol (1,2,3,4,5)pentakisphosphate.","definition_xrefs":["PMID:17412958","PMID:17412959"],"gene_count":0,"genotype_count":0,"name":"obsolete inositol hexakisphosphate 4-kinase or 6-kinase activity (obsolete GO:0033187)","synonyms":[{"name":"inositol hexakisphosphate 4-kinase or 6-kinase activity","type":"exact"}],"termid":"GO:0033187"}


id: GO:0035932
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of aldosterone into the circulatory system. Aldosterone is a pregnane-based steroid hormone produced by the outer-section (zona glomerulosa) of the adrenal cortex in the adrenal gland, and acts on the distal tubules and collecting ducts of the kidney to cause the conservation of sodium, secretion of potassium, increased water retention, and increased blood pressure. The overall effect of aldosterone is to increase reabsorption of ions and water in the kidney.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic hydroxy compound transport","termid":"GO:0015850"},{"relation_name":"is_a","term_name":"mineralocorticoid secretion","termid":"GO:0035931"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150","GO:0023052"],"is_obsolete":false,"name":"aldosterone secretion","termid":"GO:0035932"}


id: GO:0000345
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The eubacterial DNA-directed RNA polymerase is a multisubunit complex with a core composed of the essential subunits beta-prime, beta, and two copies of alpha and a fifth nonessential subunit called omega. An additional subunit, a sigma factor, is required for promoter recognition and specificity.","definition_xrefs":["PMID:11158566"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA-directed RNA polymerase complex","termid":"GO:0000428"},{"relation_name":"part_of","term_name":"cytosol","termid":"GO:0005829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005829"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005829","GO:0005737"],"is_obsolete":false,"name":"cytosolic DNA-directed RNA polymerase complex","termid":"GO:0000345"}


id: PBO:0030204
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_elongated_multiseptate_vegetative_cell","termid":"PBO:0030204"}


id: PBO:0047968
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FRAS1 related extracellular matrix 1","termid":"PBO:0047968"}


id: MONDO:0000307
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disease caused by infection with Ichthyosporea.","definition_xrefs":["MONDO:patterns/infectious_disease_by_agent"],"direct_ancestors":[{"relation_name":"is_a","term_name":"parasitic infectious disease","termid":"MONDO:0005135"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"parasitic Ichthyosporea infectious disease","secondary_identifiers":["DOID:0050291"],"synonyms":[{"name":"Ichthyosporea caused disease or disorder","type":"exact"},{"name":"Ichthyosporea disease or disorder","type":"exact"},{"name":"Ichthyosporea infectious disease","type":"exact"}],"termid":"MONDO:0000307","xrefs":{"Monarch":{"xref_id":"0000307"}}}


id: PBO:0049868
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"helicase with zinc finger","termid":"PBO:0049868"}


id: MONDO:0030917
data:
  {"annotated_genes":["SJAG_01146"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85442],"is_not":false,"summary":null,"term":"MONDO:0030917"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant non-syndromic intellectual disability","termid":"MONDO:0015802"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01146":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"intellectual disability, autosomal dominant 51","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0080232","MEDGEN:1625009","UMLS:C4540474","OMIM:617788"],"synonyms":[{"name":"MRD51","type":"related"},{"name":"autosomal dominant intellectual disability 51","type":"related"},{"name":"autosomal dominant mental retardation 51","type":"related"},{"name":"intellectual disability, autosomal dominant 51","type":"exact"},{"name":"mental retardation, autosomal dominant 51","type":"related"}],"termid":"MONDO:0030917","terms_by_termid":{"MONDO:0030917":null},"xrefs":{"Monarch":{"xref_id":"0030917"}}}


id: PBO:0028228
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cellular_trehalose_level_during_cellular_response_to_oxidative_stress","termid":"PBO:0028228"}


id: PBO:0005220
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein phosphatase Sds21","termid":"PBO:0005220"}


id: MONDO:0000173
data:
  {"annotated_genes":["SJAG_04053","SJAG_03188","SJAG_01491","SJAG_04316"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85524],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012248"},{"annotations":[86990,86991],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013162"},{"annotations":[86272],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014142"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"muscular dystrophy-dystroglycanopathy","termid":"MONDO:0018276"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01491":null,"SJAG_03188":null,"SJAG_04053":null,"SJAG_04316":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0005336","MONDO:0002320"],"is_obsolete":false,"name":"muscular dystrophy-dystroglycanopathy, type C","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIMPS:609308"],"termid":"MONDO:0000173","terms_by_termid":{"MONDO:0012248":null,"MONDO:0013162":null,"MONDO:0014142":null},"xrefs":{"Monarch":{"xref_id":"0000173"}}}


id: PBO:0089281
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell wall 1,3-beta-glucanosyltransferase Gas2","termid":"PBO:0089281"}


id: MONDO:1011341
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Omphalitis that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inflammatory disease, non-human animal","termid":"MONDO:1011327"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"omphalitis, non-human animal","termid":"MONDO:1011341","xrefs":{"Monarch":{"xref_id":"1011341"}}}


id: PR:Q96WW5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A conserved oligomeric Golgi complex subunit 8 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR21311:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved oligomeric Golgi complex subunit 8 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC11B10.03","secondary_identifiers":["UniProtKB:Q96WW5"],"synonyms":[{"name":"COG complex subunit 8 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-COG8","type":"exact"},{"name":"component of oligomeric Golgi complex 8 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"pi008","type":"related"}],"termid":"PR:Q96WW5"}


id: GO:0046852
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of bone remodeling.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of tissue remodeling","termid":"GO:0034105"},{"relation_name":"is_a","term_name":"regulation of bone remodeling","termid":"GO:0046850"},{"relation_name":"positively_regulates","term_name":"bone remodeling","termid":"GO:0046849"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of bone remodeling","synonyms":[{"name":"activation of bone remodeling","type":"narrow"},{"name":"positive regulation of bone remodelling","type":"exact"},{"name":"stimulation of bone remodeling","type":"narrow"},{"name":"up regulation of bone remodeling","type":"exact"},{"name":"up-regulation of bone remodeling","type":"exact"},{"name":"upregulation of bone remodeling","type":"exact"}],"termid":"GO:0046852"}


id: GO:1904016
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a Thyroglobulin triiodothyronine stimulus.","definition_xrefs":["GOC:TermGenie","PMID:7531505","GO_REF:0000071"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to chemical","termid":"GO:0042221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to Thyroglobulin triiodothyronine","termid":"GO:1904016"}


id: FYECO:0000040
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which M-factor was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"+ mating pheromone","termid":"FYECO:0000058"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ M-factor","synonyms":[{"name":"M factor added","type":"exact"}],"termid":"FYECO:0000040"}


id: PBO:0073589
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine hydroxymethyltransferase 1","termid":"PBO:0073589"}


id: FYPO:0004519
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate or other catalytic property of a DNA-directed DNA polymerase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"},{"relation_name":"is_a","term_name":"abnormal metabolic process","termid":"FYPO:0000860"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000707","FYPO:0005447","FYPO:0000661","FYPO:0001985","FYPO:0000002","FYPO:0000654"],"is_obsolete":false,"name":"abnormal DNA-directed DNA polymerase activity","synonyms":[{"name":"abnormal DNA polymerase activity","type":"broad"}],"termid":"FYPO:0004519"}


id: GO:1901979
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of inward rectifier potassium channel activity.","definition_xrefs":["GOC:TermGenie","PMID:23449501"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of potassium ion transmembrane transporter activity","termid":"GO:1901016"},{"relation_name":"is_a","term_name":"regulation of cation channel activity","termid":"GO:2001257"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of inward rectifier potassium channel activity","synonyms":[{"name":"regulation of Kir channel activity","type":"exact"}],"termid":"GO:1901979"}


id: PBO:0080265
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 28 pseudogene","termid":"PBO:0080265"}


id: MOD:01706
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with an isotope tagged reagent acyl group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-acylated residue","termid":"MOD:00670"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"isotope tagged reagent N-acylated residue","termid":"MOD:01706"}


id: PATO:0001111
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001111 relative density value (obsolete PATO:0001111)","termid":"PATO:0001111"}


id: PBO:0034282
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-existence_starts_with","termid":"PBO:0034282"}


id: PBO:0113076
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cyclase-associated protein, CAP; N-terminus binds adenylate cyclase and facilitates activation by RAS; N-terminus forms novel hexameric star-shaped shuriken structures that directly catalyze cofilin-mediated severing of actin filaments; C-terminus binds and recycles cofilin bound, ADP-actin monomers, facilitating regulation of actin dynamics and cell morphogenesis; N- and C-termini can function as physically separate proteins; mCAP1 is the mouse homolog","termid":"PBO:0113076"}


id: MONDO:0002029
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Chronic form of gonococcal cervicitis.","definition_xrefs":["MONDO:patterns/chronic"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chronic cervicitis","termid":"MONDO:0002030"},{"relation_name":"is_a","term_name":"gonococcal cervicitis","termid":"MONDO:0021157"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chronic gonorrhea of cervix","secondary_identifiers":["UMLS:C0153206","ICD9:098.35","SCTID:76802005","DOID:1512","MEDGEN:509203"],"synonyms":[{"name":"chronic gonococcal cervicitis","type":"exact"},{"name":"gonococcal cervicitis, chronic","type":"exact"}],"termid":"MONDO:0002029","xrefs":{"Monarch":{"xref_id":"0002029"}}}


id: PBO:0036474
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HIStidine requiring","termid":"PBO:0036474"}


id: PBO:0016933
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces specific protein Mug68","termid":"PBO:0016933"}


id: GO:0009080
data:
  {"annotated_genes":["SJAG_04145"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[68901],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042853"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of any amino acid that requires pyruvate for its synthesis, e.g. alanine.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyruvate family amino acid metabolic process","termid":"GO:0009078"},{"relation_name":"is_a","term_name":"L-amino acid catabolic process","termid":"GO:0170035"},{"relation_name":"is_a","term_name":"proteinogenic amino acid catabolic process","termid":"GO:0170040"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04145":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006520","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"pyruvate family amino acid catabolic process","references_by_uniquename":{"GO_REF:0000041":null},"synonyms":[{"name":"pyruvate family amino acid breakdown","type":"exact"},{"name":"pyruvate family amino acid catabolism","type":"exact"},{"name":"pyruvate family amino acid degradation","type":"exact"}],"termid":"GO:0009080","terms_by_termid":{"GO:0042853":null}}


id: MOD:02042
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that contains an L-asparagine residue crosslinked to one or more amino acid residues.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-asparagine residue","termid":"MOD:00903"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"crosslinked L-asparagine residue","synonyms":[{"name":"XlnkAsn","type":"exact"}],"termid":"MOD:02042"}


id: PBO:0060656
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear receptor corepressor 2","termid":"PBO:0060656"}


id: GO:0080179
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving 1-methylguanosine.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"guanosine-containing compound metabolic process","termid":"GO:1901068"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0055086"],"is_obsolete":false,"name":"1-methylguanosine metabolic process","termid":"GO:0080179"}


id: PBO:0004123
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BTB/POZ domain protein Btb2","termid":"PBO:0004123"}


id: PBO:0080927
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta pseudogene 5","termid":"PBO:0080927"}


id: PBO:0040661
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Bardet-Biedl syndrome 7","termid":"PBO:0040661"}


id: PBO:0067883
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 185","termid":"PBO:0067883"}


id: GO:0045848
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of nitrogen utilization.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of nitrogen utilization","termid":"GO:0006808"},{"relation_name":"is_a","term_name":"positive regulation of response to nutrient levels","termid":"GO:0032109"},{"relation_name":"positively_regulates","term_name":"nitrogen utilization","termid":"GO:0019740"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of nitrogen utilization","synonyms":[{"name":"activation of nitrogen utilization","type":"narrow"},{"name":"stimulation of nitrogen utilization","type":"narrow"},{"name":"up regulation of nitrogen utilization","type":"exact"},{"name":"up-regulation of nitrogen utilization","type":"exact"},{"name":"upregulation of nitrogen utilization","type":"exact"}],"termid":"GO:0045848"}


id: GO:0140306
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"The activity of recognizing mature outer membrane lipoproteins in the inner membrane and releasing from the inner membrane so that they can be transported across the periplasmic space to their target location, the outer membrane. This function exists in diderm bacteria, mediated by the LolCDE complex.","definition_xrefs":["PMID:21670534","PMID:10783239"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein transporter activity","termid":"GO:0140318"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140318"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0140318","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"lipoprotein releasing activity","termid":"GO:0140306"}


id: GO:0036401
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a pyrokinin and transmitting the signal within the cell to induce a change in cell activity. Pyrokinins are a group of insect neuropeptides that share the common C-terminal pentapeptide sequence Phe-X-Pro-Arg-Leu-NH2 (X = S, T, K, A, or G). They play a central role in diverse physiological processes including stimulation of gut motility, production and release of sex pheromones, diapause, and pupariation.","definition_xrefs":["GOC:ha","PMID:19186060","PMID:12951076"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuropeptide receptor activity","termid":"GO:0008188"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"pyrokinin receptor activity","synonyms":[{"name":"PK receptor activity","type":"exact"}],"termid":"GO:0036401"}


id: PBO:0005893
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA Histidine, mitochondrial","termid":"PBO:0005893"}


id: MONDO:0024562
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any sick sinus syndrome in which the cause of the disease is a mutation in the SCN5A gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial sick sinus syndrome","termid":"MONDO:0012061"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"sick sinus syndrome 1","secondary_identifiers":["UMLS:C1837845","MEDGEN:325270","OMIM:608567"],"synonyms":[{"name":"SCN5A sick sinus syndrome","type":"exact"},{"name":"SSS1","type":"related"},{"name":"sick sinus syndrome 1","type":"exact"},{"name":"sick sinus syndrome caused by mutation in SCN5A","type":"exact"},{"name":"sick sinus syndrome, congenital","type":"related"},{"name":"sinus bradycardia syndrome, familial","type":"related"},{"name":"sinus node disease, familial, autosomal recessive","type":"related"},{"name":"sinus rhythm, congenital absence of","type":"related"}],"termid":"MONDO:0024562","xrefs":{"Monarch":{"xref_id":"0024562"}}}


id: FYPO:0004895
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate, or speed, of actomyosin contractile ring contraction is normal (i.e. indistinguishable from wild type). Contractile ring contraction is the part of cytokinesis in which the actomyosin contractile ring constricts.","definition_xrefs":["PomBase:mah","GO:1902404"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal actomyosin contractile ring contraction","termid":"FYPO:0004097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001312","FYPO:0000257","FYPO:0001320"],"is_obsolete":false,"name":"normal rate of actomyosin contractile ring contraction","synonyms":[{"name":"normal rate of actomyosin contractile ring constriction","type":"exact"},{"name":"normal rate of actomyosin contractile ring contraction during mitotic cell cycle","type":"related"},{"name":"normal rate of actomyosin contractile ring contraction during vegetative growth","type":"exact"},{"name":"normal rate of contractile ring contraction","type":"exact"},{"name":"normal rate of cytokinetic contractile ring contraction","type":"exact"},{"name":"normal rate of mitotic actomyosin contractile ring contraction","type":"exact"},{"name":"normal rate of mitotic contractile ring contraction","type":"exact"}],"termid":"FYPO:0004895"}


id: PATO:0002166
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A duration quality of a process inhering in a bearer by virtue of the bearer's premature completion of the closure of the opening of an anatomical entity.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"premature","termid":"PATO:0000694"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"premature closure","termid":"PATO:0002166"}


id: PBO:0061909
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 1 subfamily AA member 1 pseudogene","termid":"PBO:0061909"}


id: MONDO:0021067
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A germ cell tumor that arises from the mediastinum. Representative examples include seminoma, embryonal carcinoma, yolk sac tumor, teratoma, and mixed germ cell tumor.","definition_xrefs":["NCIT:C6437"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extragonadal germ cell tumor","termid":"MONDO:0018201"},{"relation_name":"is_a","term_name":"neoplasm of mediastinum","termid":"MONDO:0021386"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediastinal germ cell tumor","secondary_identifiers":["MEDGEN:233678","UMLS:C1334655"],"synonyms":[{"name":"germ cell neoplasm of mediastinum","type":"exact"},{"name":"germ cell neoplasm of the mediastinum","type":"exact"},{"name":"germ cell tumor of mediastinum","type":"exact"},{"name":"germ cell tumor of the mediastinum","type":"exact"},{"name":"germ cell tumour of mediastinum","type":"exact"},{"name":"germ cell tumour of the mediastinum","type":"exact"},{"name":"mediastinal germ cell neoplasm","type":"exact"},{"name":"mediastinal germ cell tumor","type":"exact"},{"name":"mediastinum germ cell tumor","type":"exact"},{"name":"mediastinum germ cell tumour","type":"exact"},{"name":"thymic germ cell tumor","type":"exact"},{"name":"thymic germ cell tumour","type":"exact"}],"termid":"MONDO:0021067","xrefs":{"Monarch":{"xref_id":"0021067"}}}


id: PBO:0028676
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_histone_H3-K9_acetylation_at_centromere_outer_repeat","termid":"PBO:0028676"}


id: PBO:0034790
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SAGA complex subunit Hfi1/Ada1","termid":"PBO:0034790"}


id: MONDO:0035452
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare bone disease characterized by spontaneous adult-onset tarsal navicular osteonecrosis. Patients present with chronic mid- and hindfoot pain, swelling and tenderness over the dorsomedial aspect of the midfoot, flattening of the medial longitudinal arch, and pes planovarus. Radiographic findings include comma-shaped deformity due to collapse of the lateral part of the navicular bone and medial or dorsal protrusion of a portion or the entire bone. The condition may be bilateral or asymmetric and associated with pathological fractures.","definition_xrefs":["Orphanet:566943"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bone disorder","termid":"MONDO:0005381"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mueller-weiss syndrome","secondary_identifiers":["GARD:22283","MEDGEN:1708314","UMLS:C4761149"],"synonyms":[{"name":"Brailsford disease","type":"exact"},{"name":"Mueller-Weiss osteonecrosis of the tarsal bone","type":"exact"}],"termid":"MONDO:0035452","xrefs":{"Monarch":{"xref_id":"0035452"}}}


id: PBO:0036249
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COP9/signalosome complex protease subunit Csn5","termid":"PBO:0036249"}


id: PBO:0050499
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homeobox B9","termid":"PBO:0050499"}


id: PBO:0079184
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis specific protein Y-linked 13, pseudogene","termid":"PBO:0079184"}


id: PBO:0072813
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sterile alpha motif domain containing 9","termid":"PBO:0072813"}


id: PBO:0087916
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcription factor involved in sulfite metabolism; sole identified regulatory target is SSU1; overexpression suppresses sulfite-sensitivity of many unrelated mutants due to hyperactivation of SSU1, contains five zinc fingers; protein abundance increases in response to DNA replication stress","termid":"PBO:0087916"}


id: GO:1905543
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that binds interleukin-15 (IL-15) and that consists of, at a minimum, an interleukin, an alpha, beta and gamma chain as well as optional additional kinase subunits. The alpha chain is unique to binds IL-15 while it shares the beta chain with the IL-2 receptor and the cytokine receptor common gamma chain with multiple interleukin receptors.","definition_xrefs":["GO_REF:0000088","PMID:23104097","GOC:bhm","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"receptor complex","termid":"GO:0043235"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"interleukin-15 receptor complex","synonyms":[{"name":"IL-15 receptor complex","type":"exact"},{"name":"IL-15-receptor complex","type":"exact"},{"name":"IL15 receptor complex","type":"exact"},{"name":"IL15-receptor complex","type":"exact"},{"name":"interleukin-15-receptor complex","type":"exact"}],"termid":"GO:1905543"}


id: PBO:0012284
data:
  {"annotation_feature_type":"gene","cv_name":"species_dist","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"no apparant orthologs","termid":"PBO:0012284"}


id: PBO:0027115
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_localization_to_shmoo_tip","termid":"PBO:0027115"}


id: GO:1904248
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the extent of age-related resistance.","definition_xrefs":["GOC:TermGenie","PMID:19694953","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of innate immune response","termid":"GO:0045088"},{"relation_name":"is_a","term_name":"regulation of developmental process","termid":"GO:0050793"},{"relation_name":"regulates","term_name":"age-related resistance","termid":"GO:0090644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of age-related resistance","synonyms":[{"name":"regulation of ARR","type":"exact"},{"name":"regulation of adult seedling resistance","type":"narrow"},{"name":"regulation of developmental resistance","type":"broad"},{"name":"regulation of flowering-induced resistance","type":"narrow"},{"name":"regulation of mature seedling resistance","type":"narrow"},{"name":"regulation of ontogenic resistance","type":"broad"},{"name":"regulation of senescence-induced resistance","type":"narrow"}],"termid":"GO:1904248"}


id: PR:Q09916
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ATP-dependent RNA helicase DDX18 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01748","PRO:DNx","PANTHER:PTHR24031:SF23"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase has1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1F7.02c","secondary_identifiers":["UniProtKB:Q09916"],"synonyms":[{"name":"Spom972h-DDX18","type":"exact"}],"termid":"PR:Q09916"}


id: PBO:0079026
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-undetermined (NNN) 9-1","termid":"PBO:0079026"}


id: PBO:0076211
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO2 pseudogene 21","termid":"PBO:0076211"}


id: FYPO:0008206
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the nucleus is abolished during hypoxic stress.","definition_xrefs":["PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to nucleus during vegetative growth","termid":"FYPO:0001424"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0000138","FYPO:0001985"],"is_obsolete":false,"name":"abolished protein localization to nucleus during hypoxia","termid":"FYPO:0008206"}


id: GO:0051330
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell cycle 'gap' phase which is the interval between the completion of DNA segregation by meiosis and the beginning of DNA synthesis.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G1 phase","termid":"GO:0051318"},{"relation_name":"part_of","term_name":"meiotic interphase","termid":"GO:0051328"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0051328"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051328","GO:0008150"],"is_obsolete":false,"name":"meiotic G1 phase","synonyms":[{"name":"G1 phase of meiotic cell cycle","type":"exact"}],"termid":"GO:0051330"}


id: PBO:0065472
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome 26S subunit, non-ATPase, 10 pseudogene 3","termid":"PBO:0065472"}


id: PBO:0017741
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial thiosulfate sulfurtransferase Rdl2 (predicted)","termid":"PBO:0017741"}


id: GO:1990506
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A DNA replication process that uses parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands during the mitotic cell cycle.","definition_xrefs":["PMID:16120966"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitotic DNA replication","termid":"GO:1902969"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0006260"}],"interesting_parent_ids":["GO:0006260","GO:0008150","GO:0007049","GO:0006259"],"is_obsolete":false,"name":"mitotic DNA-templated DNA replication","synonyms":[{"name":"mitotic DNA-dependent DNA replication","type":"exact"}],"termid":"GO:1990506"}


id: PBO:0067789
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 91","termid":"PBO:0067789"}


id: GO:2000557
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of immunoglobulin production in mucosal tissue.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of immunoglobulin production","termid":"GO:0002637"},{"relation_name":"is_a","term_name":"regulation of immunoglobulin mediated immune response","termid":"GO:0002889"},{"relation_name":"regulates","term_name":"immunoglobulin production in mucosal tissue","termid":"GO:0002426"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"regulation of immunoglobulin production in mucosal tissue","synonyms":[{"name":"regulation of antibody production in mucosal tissue","type":"exact"}],"termid":"GO:2000557"}


id: PBO:0006177
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-requires_sequence_feature","termid":"PBO:0006177"}


id: PR:O60140
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC18H10.09 gene.","definition_xrefs":["UniProtKB:O60140","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C18H10.09 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC18H10.09","synonyms":[{"name":"Spom972h-SPBC18H10.09","type":"exact"}],"termid":"PR:O60140"}


id: GO:1902362
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any apoptotic process in a melanocyte, the main structural component of the epidermis.","definition_xrefs":["GOC:TermGenie","GOC:ic","PMID:20530876"],"direct_ancestors":[{"relation_name":"is_a","term_name":"apoptotic process","termid":"GO:0006915"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"melanocyte apoptotic process","synonyms":[{"name":"melanocyte apoptosis","type":"narrow"},{"name":"melanophore apoptosis","type":"narrow"},{"name":"melanophore apoptotic process","type":"narrow"}],"termid":"GO:1902362"}


id: PATO:0002318
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape constituting a transition between a rectangle and a circle; a closed curve, of which the circle and ellipse are special cases, whose parametric equation is x = a.cos2/rt, y = b.cos2/rt","definition_xrefs":["wiktionary:superellipse"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2-D shape","termid":"PATO:0002006"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"superelliptic","synonyms":[{"name":"Lamé curve","type":"exact"}],"termid":"PATO:0002318"}


id: GO:0020011
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The plastid organelle found in apicomplexans.","definition_xrefs":["ISBN:0521664470"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plastid","termid":"GO:0009536"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"apicoplast","secondary_identifiers":["Wikipedia:Apicoplast"],"termid":"GO:0020011"}


