# terms

id: MONDO:0018181
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A blistering skin disorder caused by exfoliative toxins produced by Staphylococcus aureus infection. The toxins cause the formation of bullae and diffuse skin desquamation. The lesions may be localized or generalized, far away from the initial site of infection.","definition_xrefs":["NCIT:C85077"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"commensal bacterial infectious disease","termid":"MONDO:0000315"},{"relation_name":"is_a","term_name":"staphylococcus aureus infection","termid":"MONDO:0005545"},{"relation_name":"is_a","term_name":"staphylococcal toxemia","termid":"MONDO:0017592"},{"relation_name":"is_a","term_name":"skin disease caused by bacterial infection","termid":"MONDO:0024295"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"staphylococcal scalded skin syndrome","secondary_identifiers":["SCTID:200946001","SCTID:277475006","MedDRA:10041929","MEDGEN:52484","GARD:13158","ICD10CM:L00","NORD:1781","DOID:9063","ICD9:695.81","UMLS:C0038165","EFO:0007473","icd11.foundation:1554593739","MESH:D013206","Orphanet:36236"],"synonyms":[{"name":"Ritter disease","type":"exact"},{"name":"Ritter's disease","type":"exact"},{"name":"SSSS","type":"exact"},{"name":"dermatitis exfoliativa neonatorum","type":"exact"},{"name":"generalised exfoliative disease","type":"exact"},{"name":"generalized exfoliative disease","type":"exact"},{"name":"pemphigus neonatorum","type":"exact"},{"name":"scalded skin syndrome","type":"exact"},{"name":"staphylococcal scalded skin syndrome","type":"exact"},{"name":"toxic epidermal necrolysis, subcorneal type","type":"exact"}],"termid":"MONDO:0018181","xrefs":{"Monarch":{"xref_id":"0018181"}}}


id: GO:0009237
data:
  {"annotated_genes":["SJAG_04032","SJAG_00469","SJAG_00792","SJAG_04031"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94428,94435,105721],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031169"},{"annotations":[94381],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:1905569"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving siderophores, low molecular weight Fe(III)-chelating substances made by aerobic or facultatively anaerobic bacteria, especially when growing under iron deficient conditions. The complexes of Fe(3+)-siderophores have very high stability constants and are taken up by specific transport systems by microorganisms; the subsequent release of iron requires enzymatic action.","definition_xrefs":["ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secondary metabolic process","termid":"GO:0019748"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00469":null,"SJAG_00792":null,"SJAG_04031":null,"SJAG_04032":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"siderophore metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"siderochrome metabolic process","type":"narrow"},{"name":"siderochrome metabolism","type":"narrow"},{"name":"siderophore metabolism","type":"exact"}],"termid":"GO:0009237","terms_by_termid":{"GO:0031169":null,"GO:1905569":null}}


id: GO:0002443
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involved in the carrying out of an immune response by a leukocyte.","definition_xrefs":["ISBN:0781735149","GOC:add","GO_REF:0000022"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune effector process","termid":"GO:0002252"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"leukocyte mediated immunity","secondary_identifiers":["GO:0019723","GO:0042087"],"synonyms":[{"name":"cell-mediated immune response","type":"related"},{"name":"cellular immune response","type":"related"},{"name":"immune cell effector process","type":"exact"},{"name":"immune cell mediated immunity","type":"exact"},{"name":"leucocyte immune effector process","type":"exact"},{"name":"leucocyte mediated immunity","type":"exact"},{"name":"leukocyte immune effector process","type":"exact"}],"termid":"GO:0002443"}


id: PBO:0089707
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Obg-like ATPase, human OLA1 ortholog","termid":"PBO:0089707"}


id: GO:0010575
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases or activates the frequency, rate, or extent of production of vascular endothelial growth factor.","definition_xrefs":["GOC:BHF","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of vascular endothelial growth factor production","termid":"GO:0010574"},{"relation_name":"positively_regulates","term_name":"vascular endothelial growth factor production","termid":"GO:0010573"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of vascular endothelial growth factor production","termid":"GO:0010575"}


id: FYPO:0001284
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of phosphatidylserine measured in a cell is too low to detect.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"substance absent from cell during vegetative growth","termid":"FYPO:0001208"},{"relation_name":"is_a","term_name":"decreased phospholipid level","termid":"FYPO:0001289"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"phosphatidylserine absent from cell","synonyms":[{"name":"PS absent from cell","type":"exact"},{"name":"phosphatidyl-L-serine absent from cell","type":"exact"},{"name":"phosphatidylserine absent from cell during mitotic cell cycle","type":"related"},{"name":"phosphatidylserine absent from cell during vegetative growth","type":"exact"}],"termid":"FYPO:0001284"}


id: PBO:0001231
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"argonaute binding protein 1","termid":"PBO:0001231"}


id: GO:0006330
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete single-stranded DNA binding (obsolete GO:0006330)","synonyms":[{"name":"single-stranded DNA binding","type":"exact"}],"termid":"GO:0006330"}


id: GO:0035307
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of removal of phosphate groups from a protein.","definition_xrefs":["GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of protein dephosphorylation (obsolete GO:0035307)","synonyms":[{"name":"activation of protein amino acid dephosphorylation","type":"narrow"},{"name":"positive regulation of protein amino acid dephosphorylation","type":"exact"},{"name":"stimulation of protein amino acid dephosphorylation","type":"narrow"},{"name":"up regulation of protein amino acid dephosphorylation","type":"exact"},{"name":"up-regulation of protein amino acid dephosphorylation","type":"exact"},{"name":"upregulation of protein amino acid dephosphorylation","type":"exact"}],"termid":"GO:0035307"}


id: GO:1990616
data:
  {"annotated_genes":["SJAG_02484"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[75818],"is_not":false,"summary":null,"term":"GO:1990616"}]},"cv_name":"biological_process","definition":"The directed movement of magnesium ions out of mitochondrial matrix into the cytosol by means of some agent such as a transporter or pore.","definition_xrefs":["PMID:25585246"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial magnesium ion transmembrane transport","termid":"GO:0045016"},{"relation_name":"is_a","term_name":"export from the mitochondrion","termid":"GO:0170037"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02484":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0051179","GO:0055085","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"magnesium ion export from mitochondrion","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"magnesium ion efflux from mitochondrion","type":"exact"}],"termid":"GO:1990616","terms_by_termid":{"GO:1990616":null}}


id: GO:0071632
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Eye, head or whole body movements that help to compensate movements of the environment in order to stabilize its image on the retina. In the case of whole body movements, these motor actions may also stabilize a locomotor course in response to some disturbance. Examples include: the optokinetic reflex, which allows human eyes to follow objects in motion while the head remains stationary reflex; the optomotor responses of flying insects and swimming fish.","definition_xrefs":["PMID:12726833","PMID:2469195","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"optokinetic behavior","termid":"GO:0007634"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"optomotor response","secondary_identifiers":["Wikipedia:Optomotor_response"],"termid":"GO:0071632"}


id: PBO:0084402
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Lysine methyltransferase; involved in the monomethylation of eEF1A (Tef1p/Tef2p); SET-domain family member; predicted involvement in ribosome biogenesis; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm","termid":"PBO:0084402"}


id: PBO:0091921
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wtf antidote-like meiotic drive suppressor Wtf10","termid":"PBO:0091921"}


id: GO:0018006
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The glucuronylation of the N-terminal amino acid of proteins.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein glucuronylation","termid":"GO:0018321"},{"relation_name":"is_a","term_name":"N-terminal protein amino acid modification","termid":"GO:0031365"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006486"}],"interesting_parent_ids":["GO:0006486","GO:0008150"],"is_obsolete":false,"name":"N-terminal protein amino acid glucuronylation","termid":"GO:0018006"}


id: MONDO:0957301
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spermatogenic failure","termid":"MONDO:0004983"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"spermatogenic failure 84","secondary_identifiers":["OMIM:620409","MEDGEN:1841198","UMLS:C5830562","DOID:0070583"],"termid":"MONDO:0957301","xrefs":{"Monarch":{"xref_id":"0957301"}}}


id: PBO:0054147
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1514","termid":"PBO:0054147"}


id: PBO:0091049
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-HIT family C/D snoRNP assembly protein Hit1","termid":"PBO:0091049"}


id: FYPO:0005351
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate or other property of a guanyl-nucleotide exchange factor activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal molecular function","termid":"FYPO:0000707"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0001985","FYPO:0000707"],"is_obsolete":false,"name":"increased guanyl-nucleotide exchange factor activity","synonyms":[{"name":"increased GEF activity","type":"exact"}],"termid":"FYPO:0005351"}


id: FYPO:0003820
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which a cell contains fewer mitochondria than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal subcellular component during vegetative growth","termid":"FYPO:0001322"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"mitochondria present in decreased numbers during vegetative growth","synonyms":[{"name":"decreased number of mitochondria during vegetative growth","type":"exact"},{"name":"fewer mitochondria during vegetative growth","type":"exact"},{"name":"mitochondria present in decreased numbers during mitotic cell cycle","type":"related"},{"name":"mitochondria present in reduced numbers during vegetative growth","type":"exact"}],"termid":"FYPO:0003820"}


id: PBO:0109652
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3116","termid":"PBO:0109652"}


id: GO:0019774
data:
  {"annotated_genes":["SJAG_04229","SJAG_00128","SJAG_04969","SJAG_01014","SJAG_04888","SJAG_04541","SJAG_03151"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[56994,57446,61418,61820,63673,64480,69835],"is_not":false,"summary":null,"term":"GO:0019774"}]},"cv_name":"cellular_component","definition":"The proteasome core subcomplex that constitutes the two inner rings of the proteasome core complex. An example of this component is found in Mus musculus.","definition_xrefs":["GOC:mtg_sensu","GOC:jl","PMID:10854779","GOC:rb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"intracellular anatomical structure","termid":"GO:0005622"},{"relation_name":"part_of","term_name":"proteasome core complex","termid":"GO:0005839"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00128":null,"SJAG_01014":null,"SJAG_03151":null,"SJAG_04229":null,"SJAG_04541":null,"SJAG_04888":null,"SJAG_04969":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"proteasome core complex, beta-subunit complex","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000104":null,"GO_REF:0000117":null},"termid":"GO:0019774","terms_by_termid":{"GO:0019774":null}}


id: MONDO:8000034
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete disorder (obsolete MONDO:8000034)","secondary_identifiers":["Orphanet:557493"],"termid":"MONDO:8000034","xrefs":{"Monarch":{"xref_id":"8000034"}}}


id: PBO:0011480
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNAi protein, Dsh1","termid":"PBO:0011480"}


id: MONDO:0003026
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An angiosarcoma that is located in the gallbladder.","direct_ancestors":[{"relation_name":"is_a","term_name":"gallbladder sarcoma","termid":"MONDO:0002857"},{"relation_name":"is_a","term_name":"angiosarcoma","termid":"MONDO:0016982"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0002515","MONDO:0004335"],"is_obsolete":false,"name":"gallbladder angiosarcoma","secondary_identifiers":["NCIT:C5840","MEDGEN:232222","DOID:4513","UMLS:C1333742"],"synonyms":[{"name":"angiosarcoma (disease) of gall bladder","type":"exact"},{"name":"angiosarcoma of gallbladder","type":"exact"},{"name":"angiosarcoma of the gallbladder","type":"exact"},{"name":"gall bladder angiosarcoma (disease)","type":"exact"},{"name":"gallbladder angiosarcoma","type":"exact"},{"name":"gallbladder hemangiosarcoma","type":"exact"},{"name":"hemangiosarcoma of gallbladder","type":"exact"},{"name":"hemangiosarcoma of the gallbladder","type":"exact"}],"termid":"MONDO:0003026","xrefs":{"Monarch":{"xref_id":"0003026"}}}


id: PBO:0069814
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1100, pseudogene","termid":"PBO:0069814"}


id: MONDO:0016328
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete fatty acid oxidation and ketogenesis disorder with hypertrophic cardiomyopathy (obsolete MONDO:0016328)","secondary_identifiers":["Orphanet:217591"],"termid":"MONDO:0016328","xrefs":{"Monarch":{"xref_id":"0016328"}}}


id: PBO:0088708
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial tRNA N6-threonyl-carbamoyl-adenosine (t6A) Pgp1","termid":"PBO:0088708"}


id: PR:O74347
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cmc1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74347"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COX assembly mitochondrial protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC21D10.07","synonyms":[{"name":"Cx9C motif-containing protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-cmc1","type":"exact"}],"termid":"PR:O74347"}


id: GO:0070397
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving wall teichoic acid, which is a major component of the cell wall of Gram-positive bacteria and typically consists of a polymer of glycerol-phosphate or ribitol-phosphate to which are attached glycosyl and D-alanyl ester residues and which is covalently linked to peptidoglycan.","definition_xrefs":["PMID:16020688","PMID:14665680","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"teichoic acid metabolic process","termid":"GO:0046374"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"wall teichoic acid metabolic process","synonyms":[{"name":"WTA metabolic process","type":"exact"},{"name":"wall teichoic acid metabolism","type":"exact"}],"termid":"GO:0070397"}


id: MONDO:0018372
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete osteonecrosis (obsolete MONDO:0018372)","termid":"MONDO:0018372","xrefs":{"Monarch":{"xref_id":"0018372"}}}


id: MONDO:0001945
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disease believed to be caused by a viral illness that triggers degeneration of the nerve cells in the substantia nigra. Overall, this degeneration leads to clinical parkinsonism.","definition_xrefs":["Wikipedia:Postencephalitic_parkinsonism"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secondary Parkinson disease","termid":"MONDO:0006966"},{"relation_name":"is_a","term_name":"parkinsonian disorder","termid":"MONDO:0021095"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"postencephalitic Parkinson disease","secondary_identifiers":["EFO:1001402","SCTID:19972008","Orphanet:97349","UMLS:C0030568","MEDGEN:10591","NCIT:C34898","MESH:D010301","GARD:19370","DOID:14332"],"synonyms":[{"name":"postencephalitic Parkinsonism","type":"exact"},{"name":"postencephalitic parkinsonism","type":"exact"}],"termid":"MONDO:0001945","xrefs":{"Monarch":{"xref_id":"0001945"}}}


id: FYPO:0005199
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype observed in the vegetative growth phase of the life cycle in which negative regulation of a protein kinase activity occurs to a lower extent than normal.","definition_xrefs":["PMID:14739927","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal regulation of catalytic activity","termid":"FYPO:0004916"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"decreased negative regulation of protein kinase activity","synonyms":[{"name":"decreased inhibition of protein kinase activity","type":"narrow"},{"name":"decreased negative regulation of protein kinase activity during mitotic cell cycle","type":"related"},{"name":"decreased negative regulation of protein kinase activity during vegetative growth","type":"exact"},{"name":"reduced negative regulation of protein kinase activity","type":"exact"}],"termid":"FYPO:0005199"}


id: MOD:00462
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-tryptophan residue to L-kynurenine.","definition_xrefs":["OMSSA:66","PubMed:11029593","PubMed:9252331","Unimod:351#W","DeltaMass:357"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-tryptophan residue","termid":"MOD:00918"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-kynurenine","synonyms":[{"name":"(2S)-2-amino-4-(2-aminophenyl)-4-oxo-butanoic acid","type":"exact"},{"name":"Trp->Kynurenin","type":"related"},{"name":"kynureninw","type":"exact"},{"name":"tryptophan oxidation to kynurenin","type":"related"}],"termid":"MOD:00462"}


id: PBO:0063059
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"promoter of CDKN1A antisense DNA damage activated RNA","termid":"PBO:0063059"}


id: MONDO:1012903
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Waardenburg syndrome that occurs in pigs due to a mutation in the SOX10 gene created by genetic engineering or gene editing.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Waardenburg syndrome, non-human animal","termid":"MONDO:1011447"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Waardenburg syndrome, SOX10-related, pig","secondary_identifiers":["OMIA:002453-9823"],"termid":"MONDO:1012903","xrefs":{"Monarch":{"xref_id":"1012903"}}}


id: PATO:0000340
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000340 relative compatability value (obsolete PATO:0000340)","termid":"PATO:0000340"}


id: PBO:0046563
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group K member 5","termid":"PBO:0046563"}


id: GO:0035912
data:
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id: PBO:0088651
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id: PBO:0001866
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id: PBO:0091114
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id: MONDO:0008724
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id: PBO:0074605
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id: PBO:0082613
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id: MOD:01088
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id: PBO:0053955
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id: SO:0001130
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id: PBO:0053876
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id: GO:0035649
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id: GO:0090722
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id: PBO:0068533
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id: PBO:0048561
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id: PR:O13724
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id: MONDO:0005151
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disorders","type":"exact"}],"termid":"MONDO:0005151","terms_by_termid":{"MONDO:0005148":null,"MONDO:0007256":null,"MONDO:0007273":null,"MONDO:0007369":null,"MONDO:0007453":null,"MONDO:0007681":null,"MONDO:0007767":null,"MONDO:0007768":null,"MONDO:0007785":null,"MONDO:0008192":null,"MONDO:0008265":null,"MONDO:0008294":null,"MONDO:0008296":null,"MONDO:0008297":null,"MONDO:0008319":null,"MONDO:0008566":null,"MONDO:0008840":null,"MONDO:0008980":null,"MONDO:0009025":null,"MONDO:0009050":null,"MONDO:0009258":null,"MONDO:0009416":null,"MONDO:0009514":null,"MONDO:0009916":null,"MONDO:0010134":null,"MONDO:0010350":null,"MONDO:0010420":null,"MONDO:0010814":null,"MONDO:0010926":null,"MONDO:0010939":null,"MONDO:0010961":null,"MONDO:0011121":null,"MONDO:0011156":null,"MONDO:0011214":null,"MONDO:0011236":null,"MONDO:0011301":null,"MONDO:0011365":null,"MONDO:0011503":null,"MONDO:0011544":null,"MONDO:0011559":null,"MONDO:0011717":null,"MONDO:0011740":null,"MONDO:0012004":null,"MONDO:0012794":null,"MONDO:0012992":null,"MONDO:0013000":null,"MONDO:0013111":null,"MONDO:0013310":null,"MONDO:0013602":null,"MONDO:0013689":null,"MONDO:0013722":null,"MONDO:0013771":null,"MONDO:0013972":null,"MONDO:0013995":null,"MONDO:0014126":null,"MONDO:0014321":null,"MONDO:0014359":null,"MONDO:0014455":null,"MONDO:0014488":null,"MONDO:0014497":null,"MONDO:0014659":null,"MONDO:0014674":null,"MONDO:0014686":null,"MONDO:0014843":null,"MONDO:0014860":null,"MONDO:0024568":null,"MONDO:0026731":null,"MONDO:0026763":null,"MONDO:0030736":null,"MONDO:0030810":null,"MONDO:0030870":null,"MONDO:0030886":null,"MONDO:0031040":null,"MONDO:0032771":null,"MONDO:0032787":null,"MONDO:0032844":null,"MONDO:0054743":null,"MONDO:0054850":null,"MONDO:0054862":null,"MONDO:0100165":null,"MONDO:0859362":null,"MONDO:0957577":null,"MONDO:0958035":null,"MONDO:8000015":null},"xrefs":{"Monarch":{"xref_id":"0005151"}}}


id: GO:0051329
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell cycle phase following cytokinesis which begins with G1 phase, proceeds through S phase and G2 phase and ends when mitotic prophase begins. During interphase the cell readies itself for mitosis and the replication of its DNA occurs.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"interphase","termid":"GO:0051325"},{"relation_name":"is_a","term_name":"mitotic cell cycle phase","termid":"GO:0098763"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mitotic interphase","synonyms":[{"name":"interphase of mitotic cell cycle","type":"exact"}],"termid":"GO:0051329"}


id: MONDO:0012320
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any familial or sporadic hemiplegic migraine in which the cause of the disease is a mutation in the SCN1A gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial hemiplegic migraine","termid":"MONDO:0000700"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"migraine, familial hemiplegic, 3","secondary_identifiers":["GARD:10974","UMLS:C1864987","MEDGEN:400655","DOID:0111183","MESH:C566500","OMIM:609634"],"synonyms":[{"name":"FHM3","type":"related"},{"name":"SCN1A familial or sporadic hemiplegic migraine","type":"exact"},{"name":"familial or sporadic hemiplegic migraine caused by mutation in SCN1A","type":"exact"},{"name":"migraine, familial hemiplegic, 3","type":"exact"},{"name":"migraine, familial hemiplegic, type 3","type":"exact"}],"termid":"MONDO:0012320","xrefs":{"Monarch":{"xref_id":"0012320"}}}


id: GO:0016695
data:
  {"annotated_genes":["SJAG_02497"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[115096],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008901"}]},"cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction (redox) reaction in which hydrogen acts as an electron donor.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity","termid":"GO:0016491"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02497":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"oxidoreductase activity, acting on hydrogen as donor","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:1.12.-.-"],"synonyms":[{"name":"oxidoreductase activity, acting on hydrogen as donor, other acceptors","type":"narrow"}],"termid":"GO:0016695","terms_by_termid":{"GO:0008901":null}}


id: _global:results_in_formation_of
data:
  {"annotation_feature_type":"gene","cv_name":"go/extensions/gorel","definition":"The relationship linking a entity and its participation in a process whereby at the beginning of the process the entity does not exist and at the end of the process the entity exists.","definition_xrefs":["GOC:mtg_berkeley_2013"],"direct_ancestors":[{"relation_name":"is_a","term_name":"has_output","termid":"RO:0002234"},{"relation_name":"is_a","term_name":"go_annotation_extension_relation","termid":"_global:go_annotation_extension_relation"},{"relation_name":"is_a","term_name":"has_output","termid":"_global:has_output"},{"relation_name":"is_a","term_name":"results_in_developmental_progression_of","termid":"_global:results_in_developmental_progression_of"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"results_in_formation_of","secondary_identifiers":["GOREL:0001020","RO:0002297"],"termid":"_global:results_in_formation_of"}


id: PBO:0063517
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyridoxal dependent decarboxylase domain containing 2, pseudogene","termid":"PBO:0063517"}


id: GO:0140709
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A type of non-canonical Wnt signaling in which Wnt binding to its receptor on the surface a the target cell results in internalization and cleavage of the frizzled receptor to yield a C-terminal fragment that is imported into the nucleus. The frizzled C-terminal fragment is incorporated into large ribonucleoprotein particles and stimulates their egress via nuclear budding.","definition_xrefs":["PMID:22579286","PMID:22510459"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-canonical Wnt signaling pathway","termid":"GO:0035567"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"Frizzled Nuclear Import pathway","synonyms":[{"name":"FNI","type":"broad"},{"name":"Frizzled Nuclear Import Wnt Pathway","type":"exact"}],"termid":"GO:0140709"}


id: GO:0008405
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of an NADPH- and oxygen-dependent reaction that converts arachidonic acid to cis-11,12-epoxyeicosatrienoic acid.","definition_xrefs":["PMID:10681399","RHEA:51480"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arachidonate epoxygenase activity","termid":"GO:0008392"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"arachidonate 11,12-epoxygenase activity","synonyms":[{"name":"arachidonic acid 11,12-epoxygenase activity","type":"exact"},{"name":"cytochrome P450 CYP2C38","type":"narrow"}],"termid":"GO:0008405"}


id: GO:0046323
data:
  {"annotated_genes":["SJAG_00057","SJAG_03608"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[110973,114504],"is_not":false,"summary":null,"term":"GO:0046323"}]},"cv_name":"biological_process","definition":"The directed movement of the hexose monosaccharide D-glucose into a cell or organelle.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"D-glucose transmembrane transport","termid":"GO:1904659"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00057":null,"SJAG_03608":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0051179","GO:0055085","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"D-glucose import","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Wikipedia:Glucose_uptake"],"synonyms":[{"name":"glucose import","type":"exact"},{"name":"glucose uptake","type":"exact"}],"termid":"GO:0046323","terms_by_termid":{"GO:0046323":null}}


id: MONDO:0014531
data:
  {"annotated_genes":["SJAG_04387","SJAG_02509"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85723,85724],"is_not":false,"summary":null,"term":"MONDO:0014531"}]},"cv_name":"mondo","definition":"Any amyotrophic lateral sclerosis in which the cause of the disease is a mutation in the TUBA4A gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial amyotrophic lateral sclerosis","termid":"MONDO:0005144"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02509":null,"SJAG_04387":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"amyotrophic lateral sclerosis type 22","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C4015512","MEDGEN:863949","GARD:16068","DOID:0060355","OMIM:616208"],"synonyms":[{"name":"ALS 22","type":"exact"},{"name":"ALS22","type":"related"},{"name":"TUBA4A amyotrophic lateral sclerosis","type":"exact"},{"name":"amyotrophic lateral sclerosis 22","type":"exact"},{"name":"amyotrophic lateral sclerosis 22 with or without frontotemporal dementia","type":"exact"},{"name":"amyotrophic lateral sclerosis caused by mutation in TUBA4A","type":"exact"},{"name":"amyotrophic lateral sclerosis type 22","type":"exact"}],"termid":"MONDO:0014531","terms_by_termid":{"MONDO:0014531":null},"xrefs":{"Monarch":{"xref_id":"0014531"}}}


id: PBO:0067014
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 23, pseudogene","termid":"PBO:0067014"}


id: GO:0005835
data:
  {"annotated_genes":["SJAG_04107","SJAG_04972"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[58539,72615],"is_not":false,"summary":null,"term":"GO:0005835"}]},"cv_name":"cellular_component","definition":"A multienzyme complex that catalyses the synthesis of fatty acids from acetyl CoA.","definition_xrefs":["GOC:sgd_curators","GOC:pde","ISBN:0716746840"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein-containing complex","termid":"GO:0140535"},{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04107":null,"SJAG_04972":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"fatty acid synthase complex","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null},"secondary_identifiers":["GO:0031374","GO:0031373","Wikipedia:Fatty_acid_synthetase_complex"],"synonyms":[{"name":"FAS complex","type":"exact"},{"name":"cytosolic FAS complex","type":"exact"},{"name":"cytosolic fatty acid synthase complex","type":"exact"},{"name":"cytosolic type I FAS complex","type":"exact"},{"name":"cytosolic type I fatty acid synthase complex","type":"exact"},{"name":"fatty acid synthetase complex","type":"exact"},{"name":"holo-[acyl-carrier-protein] synthase complex","type":"related"}],"termid":"GO:0005835","terms_by_termid":{"GO:0005835":null}}


id: PBO:0054890
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2304","termid":"PBO:0054890"}


id: MONDO:0006268
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare diffuse large B-cell lymphoma that arises from the liver and the bulk of the tumor is located in the liver.","definition_xrefs":["NCIT:C96843"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune system cancer","termid":"MONDO:0000621"},{"relation_name":"is_a","term_name":"liver lymphoma","termid":"MONDO:0004695"},{"relation_name":"is_a","term_name":"hepatocellular carcinoma","termid":"MONDO:0007256"},{"relation_name":"is_a","term_name":"diffuse large B-cell lymphoma","termid":"MONDO:0018905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0004992","MONDO:0005046","MONDO:0004335","MONDO:0002515"],"is_obsolete":false,"name":"liver diffuse large B-cell lymphoma","secondary_identifiers":["MEDGEN:473542","UMLS:C2184126","EFO:1000323"],"synonyms":[{"name":"diffuse large B-cell lymphoma of liver","type":"exact"},{"name":"hepatic diffuse large B-cell lymphoma","type":"exact"},{"name":"liver diffuse large B-cell lymphoma","type":"exact"},{"name":"primary hepatic diffuse large B-cell lymphoma","type":"exact"},{"name":"primary liver diffuse large B-cell lymphoma","type":"exact"}],"termid":"MONDO:0006268","xrefs":{"Monarch":{"xref_id":"0006268"}}}


id: MONDO:0001115
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Polycythemia that occurs in groups of related individuals.","definition_xrefs":["NCIT:C26955"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"polycythemia","termid":"MONDO:0005571"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"familial polycythemia","secondary_identifiers":["UMLS:C0152264","ICD9:289.6","MEDGEN:57520","NANDO:2200644","OMIMPS:133100","NANDO:2100187","DOID:10780"],"synonyms":[{"name":"erythrocytosis, familial","type":"exact"},{"name":"familial polycythemia","type":"exact"},{"name":"hereditary polycythemia (disease)","type":"exact"},{"name":"primary polycythemia","type":"narrow"}],"termid":"MONDO:0001115","xrefs":{"Monarch":{"xref_id":"0001115"}}}


id: GO:0005696
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A complex of DNA and protein that seals the end of a chromosome. The telomeric DNA consists of simple tandemly repeated sequences specific for each species. Typically one strand is G-rich and the other C-rich. The G-rich strand forms a 3'-terminal overhang, the length of which varies with species. The single strand overhang is bound by a variety of proteins, including telomere capping proteins that bind to the single-stranded DNA.","definition_xrefs":["PMID:11352055","ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete telomere (obsolete GO:0005696)","synonyms":[{"name":"telomere","type":"exact"}],"termid":"GO:0005696"}


id: PBO:0064775
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diphosphoinositol pentakisphosphate kinase 1","termid":"PBO:0064775"}


id: PATO:0000885
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000885 male fertility value (obsolete PATO:0000885)","termid":"PATO:0000885"}


id: PR:O00103
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ubc11 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O00103"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-conjugating enzyme E2-20 kDa (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1259.15c","synonyms":[{"name":"E2 ubiquitin-conjugating enzyme 11 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-ubc11","type":"exact"},{"name":"ubiquitin carrier protein (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ubiquitin-protein ligase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O00103"}


id: GO:0015798
data:
  {"annotated_genes":["SJAG_04506","SJAG_03595"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73371,72425],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904679"}]},"cv_name":"biological_process","definition":"The directed movement of myo-inositol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Myo-inositol is 1,2,3,4,5/4,6-cyclohexanehexol, a growth factor for animals and microorganisms.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic hydroxy compound transport","termid":"GO:0015850"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03595":null,"SJAG_04506":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"myo-inositol transport","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-429593"],"synonyms":[{"name":"vitamin Bh transport","type":"exact"}],"termid":"GO:0015798","terms_by_termid":{"GO:1904679":null}}


id: GO:0060531
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which relatively unspecialized cells acquires specialized structural and functions of a neuroendocrine cell of the prostate gland acinus.","definition_xrefs":["PMID:18977204","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell differentiation involved in prostate gland development","termid":"GO:0060742"},{"relation_name":"is_a","term_name":"neuroendocrine cell differentiation","termid":"GO:0061101"},{"relation_name":"part_of","term_name":"prostate glandular acinus development","termid":"GO:0060525"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neuroendocrine cell differentiation involved in prostate gland acinus development","termid":"GO:0060531"}


id: MONDO:1011473
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Amyloidosis that occurs in Japanese quail.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bird disease","termid":"MONDO:0024905"},{"relation_name":"is_a","term_name":"amyloidosis, non-human animal","termid":"MONDO:1011415"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amyloidosis, Japanese quail","secondary_identifiers":["OMIA:000037-93934"],"termid":"MONDO:1011473","xrefs":{"Monarch":{"xref_id":"1011473"}}}


id: PBO:0047822
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"forkhead box O3","termid":"PBO:0047822"}


id: GO:0050136
data:
  {"annotated_genes":["SJAG_04152","SJAG_01539"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[97042,113188],"is_not":false,"summary":null,"term":"GO:0050136"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: NADH + H+ + a quinone = NAD+ + a quinol.","definition_xrefs":["RHEA:46160"],"direct_ancestors":[{"relation_name":"is_a","term_name":"NADH dehydrogenase activity","termid":"GO:0003954"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor","termid":"GO:0016655"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01539":null,"SJAG_04152":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"NADH:ubiquinone reductase (non-electrogenic) activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:1.6.5.9","MetaCyc:1.6.99.5-RXN"],"synonyms":[{"name":"NADH dehydrogenase (quinone) activity","type":"related"}],"termid":"GO:0050136","terms_by_termid":{"GO:0050136":null}}


id: PBO:0074042
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 25 member 25","termid":"PBO:0074042"}


id: PBO:0075838
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SSTR5 antisense RNA 1","termid":"PBO:0075838"}


id: PBO:0081633
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF561 antisense RNA 1 (head to head)","termid":"PBO:0081633"}


id: MONDO:0957208
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"combined pituitary hormone deficiencies, genetic form","termid":"MONDO:0013099"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"pituitary hormone deficiency, combined or isolated, 8","secondary_identifiers":["MEDGEN:1841011","OMIM:620303","UMLS:C5830375"],"termid":"MONDO:0957208","xrefs":{"Monarch":{"xref_id":"0957208"}}}


id: PBO:0079507
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin pseudogene 5","termid":"PBO:0079507"}


id: PBO:0071994
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S6 pseudogene 23","termid":"PBO:0071994"}


id: PBO:0035943
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cytoplasmic_microtubule_nucleation_during_mitotic_interphase","termid":"PBO:0035943"}


id: PBO:0056786
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microfibril associated protein 3","termid":"PBO:0056786"}


id: PBO:0054628
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2033","termid":"PBO:0054628"}


id: PBO:0042760
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centrosomal protein 43","termid":"PBO:0042760"}


id: GO:0001687
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete cytoplasmic dynein heavy chain (obsolete GO:0001687)","synonyms":[{"name":"cytoplasmic dynein heavy chain","type":"exact"}],"termid":"GO:0001687"}


id: MONDO:0015923
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An instance of peripheral neuropathy that is acquired during the lifetime of the individual.","definition_xrefs":["MONDO:patterns/acquired"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peripheral neuropathy","termid":"MONDO:0005244"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244"],"is_obsolete":false,"name":"acquired peripheral neuropathy","secondary_identifiers":["Orphanet:182086","GARD:20243","MEDGEN:1842976","UMLS:C5680596"],"synonyms":[{"name":"acquired peripheral neuropathy","type":"exact"}],"termid":"MONDO:0015923","xrefs":{"Monarch":{"xref_id":"0015923"}}}


id: MONDO:0010390
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Ocular albinism with late-onset sensorineural deafness (OASD), is a rare, X-linked inherited type of ocular albinism described in one African kindred (7 males over 3 generations) to date, characterized by severe visual impairment, translucent pale-blue iridies, a reduction in the retinal pigment and moderately severe deafness by middle age (fourth to fifth decade of life). It is unclear whether it is allelic to X-linked recessive ocular albinism or a contiguous gene syndrome.","definition_xrefs":["Orphanet:1000"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ocular albinism","termid":"MONDO:0017304"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"ocular albinism with late-onset sensorineural deafness","secondary_identifiers":["MEDGEN:337149","OMIM:300650","SCTID:722054007","UMLS:C1845069","GARD:592"],"synonyms":[{"name":"OASD","type":"related"},{"name":"albinism ocular late onset sensorineural deafness","type":"related"},{"name":"albinism, ocular, with late-onset sensorineural deafness","type":"related"},{"name":"deafness and ocular albinism","type":"related"},{"name":"ocular albinism with sensorineural deafness","type":"related"}],"termid":"MONDO:0010390","xrefs":{"Monarch":{"xref_id":"0010390"}}}


id: GO:0150061
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by an extracellular amylin, or another ligand, combining with an amylin receptor 3 (AMY3), a G protein-coupled receptor complex, on the surface of the target cell. The AMY3 signaling pathway can also be initiated by the amyloid-beta complex. AMY3 signaling results in increased import of calcium ions into the cytosol across plasma membrane, increased phosphorylation of ERK1/2, Act, and a PKA regulatory subunit II, as well as increased expression of cFos.","definition_xrefs":["GOC:aruk","GOC:bc","PMID:22500019"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amylin receptor signaling pathway","termid":"GO:0097647"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"amylin receptor 3 signaling pathway","synonyms":[{"name":"AMY3 signaling pathway","type":"exact"}],"termid":"GO:0150061"}


id: PBO:0062590
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 10 subfamily H member 5","termid":"PBO:0062590"}


id: GO:1990093
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The negative regulation of the receptor clustering process in which N-methyl-D-aspartate (NMDA) receptors are localized to distinct domains in the cell membrane.","definition_xrefs":["PMID:18442977"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of N-methyl-D-aspartate receptor clustering (obsolete GO:1990093)","synonyms":[{"name":"negative regulation of N-methyl-D-aspartate receptor clustering","type":"exact"},{"name":"negative regulation of NMDA receptor clustering","type":"exact"}],"termid":"GO:1990093"}


id: GO:0018945
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving any organosilicon, organic compounds that contain silicon, a nonmetal element analogous to carbon.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xenobiotic metabolic process","termid":"GO:0006805"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"organosilicon metabolic process","secondary_identifiers":["UM-BBD_pathwayID:osi"],"synonyms":[{"name":"organosilicon metabolism","type":"exact"},{"name":"organosilicone metabolic process","type":"exact"},{"name":"organosilicone metabolism","type":"exact"}],"termid":"GO:0018945"}


id: PBO:0066290
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein Y-linked family 2 member Q, pseudogene","termid":"PBO:0066290"}


id: GO:0050227
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-amino-4-hydroxypteridine + O2 = 2-amino-4,7-dihydroxypteridine + unknown.","definition_xrefs":["RHEA:12777"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on CH or CH2 groups, oxygen as acceptor","termid":"GO:0016727"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"pteridine oxidase activity","secondary_identifiers":["MetaCyc:PTERIDINE-OXIDASE-RXN","EC:1.17.3.1"],"synonyms":[{"name":"2-amino-4-hydroxypteridine:oxygen oxidoreductase (7-hydroxylating)","type":"related"}],"termid":"GO:0050227"}


id: GO:0071034
data:
  {"annotated_genes":["SJAG_01830","SJAG_03939","SJAG_03745","SJAG_03984","SJAG_02622","SJAG_04360","SJAG_04321","SJAG_01064","SJAG_01521","SJAG_00701"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[75411,78026],"is_not":false,"summary":null,"term":"GO:0071034"},{"annotations":[113086,112185,100095,118448,103310,71231,115706,70670],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071039"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of cryptic unstable transcripts (CUTs).","definition_xrefs":["GOC:dgf","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CUT metabolic process","termid":"GO:0071043"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00701":null,"SJAG_01064":null,"SJAG_01521":null,"SJAG_01830":null,"SJAG_02622":null,"SJAG_03745":null,"SJAG_03939":null,"SJAG_03984":null,"SJAG_04321":null,"SJAG_04360":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"CUT catabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"cryptic unstable transcript catabolic process","type":"exact"}],"termid":"GO:0071034","terms_by_termid":{"GO:0071034":null,"GO:0071039":null}}


id: PBO:0047624
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FIGNL2 divergent transcript","termid":"PBO:0047624"}


id: PBO:0030578
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_vacuolar_alanine_level","termid":"PBO:0030578"}


id: PBO:0064824
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 1 regulatory subunit 3F","termid":"PBO:0064824"}


id: FYPO:0001673
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the size, shape, or structure of the nucleus is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal subcellular component","termid":"FYPO:0001233"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal nuclear morphology","termid":"FYPO:0001673"}


id: PBO:0046765
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exosome component 5","termid":"PBO:0046765"}


id: PBO:0114116
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CLRC ubiquitin ligase complex WD repeat subunit Rik1","termid":"PBO:0114116"}


id: GO:0099102
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Any G-protein gated potassium channel activity that is involved regulation of postsynaptic membrane potential.","definition_xrefs":["GOC:dos","PMID:9429760"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G-protein gated potassium channel activity","termid":"GO:0099101"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"G-protein gated potassium channel activity involved in regulation of postsynaptic membrane potential","termid":"GO:0099102"}


id: GO:0140439
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of a stearoyl (systematic name, octadecanoyl) group to a sulfur atom on the cysteine of a protein molecule, in the reaction: octadecanoyl-CoA + L-cysteinyl-[protein] = CoA + S-octadecanoyl-L-cysteinyl-[protein].","definition_xrefs":["PMID:22247542","RHEA:59740","PMID:22968831","PMID:12681491"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-cysteine S-acyltransferase activity","termid":"GO:0019707"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0140096","GO:0003674","GO:0003824","GO:0016746","GO:0016740"],"is_obsolete":false,"name":"protein-cysteine S-stearoyltransferase activity","termid":"GO:0140439"}


id: GO:0044018
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + histone H3 L-lysine (position 36) = CoA + histone H3 N6-acetyl-L-lysine (position 36).","definition_xrefs":["PMID:18552846"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H3 acetyltransferase activity","termid":"GO:0010484"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0034212"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0140096","GO:0034212","GO:0016746"],"is_obsolete":false,"name":"histone H3K36 acetyltransferase activity","synonyms":[{"name":"histone H3-K36 acetyltransferase activity","type":"exact"},{"name":"histone acetylase activity (H3-K36 specific)","type":"exact"},{"name":"histone acetyltransferase activity (H3-K36 specific)","type":"exact"},{"name":"histone lysine N-acetyltransferase activity (H3-K36 specific)","type":"exact"}],"termid":"GO:0044018"}


id: PBO:0030562
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cellular_tryptophan_level","termid":"PBO:0030562"}


id: MONDO:0020344
data:
  {"annotated_genes":["SJAG_04728"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86361],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012157"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital nervous system disorder","termid":"MONDO:0002320"},{"relation_name":"is_a","term_name":"congenital myasthenic syndrome","termid":"MONDO:0018940"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04728":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"postsynaptic congenital myasthenic syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:15022","Orphanet:98913","MEDGEN:199758","UMLS:C0751883"],"synonyms":[{"name":"postsynaptic congenital myasthenic syndromes","type":"related"}],"termid":"MONDO:0020344","terms_by_termid":{"MONDO:0012157":null},"xrefs":{"Monarch":{"xref_id":"0020344"}}}


id: GO:0004833
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-tryptophan + O2 = N-formyl-L-kynurenine.","definition_xrefs":["EC:1.13.11.11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"tryptophan 2,3-dioxygenase activity","secondary_identifiers":["MetaCyc:TRYPTOPHAN-23-DIOXYGENASE-RXN","Reactome:R-HSA-198563","Reactome:R-HSA-888614","Reactome:R-HSA-71188","GO:0004426","RHEA:24536"],"synonyms":[{"name":"L-tryptophan 2,3-dioxygenase activity","type":"related"},{"name":"L-tryptophan pyrrolase activity","type":"related"},{"name":"L-tryptophan:oxygen 2,3-oxidoreductase (decyclizing)","type":"related"},{"name":"TDO","type":"related"},{"name":"indolamine 2,3-dioxygenase activity","type":"broad"},{"name":"indoleamine-pyrrole 2,3-dioxygenase activity","type":"exact"},{"name":"tryptamin 2,3-dioxygenase activity","type":"related"},{"name":"tryptamine 2,3-dioxygenase activity","type":"related"},{"name":"tryptophan oxygenase activity","type":"broad"},{"name":"tryptophan peroxidase activity","type":"broad"},{"name":"tryptophan pyrrolase activity","type":"broad"}],"termid":"GO:0004833"}


id: MONDO:0021668
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete disorder involving pain (obsolete MONDO:0021668)","secondary_identifiers":["DOID:0060164","SCTID:373673007"],"synonyms":[{"name":"pain disorder","type":"exact"}],"termid":"MONDO:0021668","xrefs":{"Monarch":{"xref_id":"0021668"}}}


id: PR:Q8TFH7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A tRNA-splicing endonuclease subunit Sen2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR21227:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-splicing endonuclease subunit sen2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAPB17E12.07c","secondary_identifiers":["UniProtKB:Q8TFH7"],"synonyms":[{"name":"SPAPB17E12.07c","type":"related"},{"name":"Spom972h-TSEN2","type":"exact"},{"name":"tRNA-intron endonuclease sen2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q8TFH7"}


id: PBO:0030840
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_guanine_import","termid":"PBO:0030840"}


id: PBO:0081224
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger MYM-type containing 4","termid":"PBO:0081224"}


id: PBO:0005530
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arrestin/PY protein 2","termid":"PBO:0005530"}


id: MONDO:0012350
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"atypical hemolytic-uremic syndrome","termid":"MONDO:0016244"},{"relation_name":"is_a","term_name":"hereditary nephritis","termid":"MONDO:0005334"},{"relation_name":"is_a","term_name":"non-immunoglobulin-mediated membranoproliferative glomerulonephritis","termid":"MONDO:0018013"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"complement factor H deficiency","secondary_identifiers":["OMIM:609814","NANDO:2200791","SCTID:234622003","MEDGEN:96024","GARD:18551","UMLS:C0398777","MESH:C562875","ICD9:279.8"],"synonyms":[{"name":"CFHD","type":"related"},{"name":"Cfh deficiency","type":"related"},{"name":"complement factor H deficiency","type":"exact"},{"name":"factor H deficiency","type":"related"}],"termid":"MONDO:0012350","xrefs":{"Monarch":{"xref_id":"0012350"}}}


id: GO:0150110
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of cholesterol esterification.","definition_xrefs":["GOC:bc","GOC:aruk","PMID:21810484","PMID:24201375"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of cholesterol esterification (obsolete GO:0150110)","termid":"GO:0150110"}


id: GO:0060955
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The commitment of neural crest cells to cardiac glial cell fates and their capacity to differentiate into cardiac glial cells.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac glial cell fate commitment","termid":"GO:0060953"},{"relation_name":"part_of","term_name":"neural crest-derived cardiac glial cell differentiation","termid":"GO:0060951"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neural crest-derived cardiac glial cell fate commitment","termid":"GO:0060955"}


id: PBO:0055811
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LPGAT1 antisense RNA 1","termid":"PBO:0055811"}


id: PBO:0028868
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_snoRNA_level","termid":"PBO:0028868"}


id: GO:0046784
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of intronless viral mRNA from the host nucleus to the cytoplasm for translation.","definition_xrefs":["PMID:11598019"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral process","termid":"GO:0016032"},{"relation_name":"part_of","term_name":"viral gene expression","termid":"GO:0019080"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"viral mRNA export from host cell nucleus","synonyms":[{"name":"intronless viral mRNA export from host cell nucleus","type":"exact"},{"name":"intronless viral mRNA export from host nucleus","type":"related"},{"name":"intronless viral mRNA export out of nucleus","type":"exact"},{"name":"intronless viral mRNA transport from nucleus to cytoplasm","type":"exact"},{"name":"intronless viral mRNA-nucleus export","type":"exact"}],"termid":"GO:0046784"}


id: MONDO:0958301
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A round cell sarcoma with EWSR1-non-ETS fusion that is characterized by the presence of FUS-NFATC2 gene fusion.","definition_xrefs":["DOID:0081410"],"direct_ancestors":[{"relation_name":"is_a","term_name":"round cell sarcoma with EWSR1-non-ETS fusion","termid":"MONDO:0958160"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"round cell sarcoma with FUS-NFATC2 gene fusion","secondary_identifiers":["MEDGEN:1791495","UMLS:C5555054"],"termid":"MONDO:0958301","xrefs":{"Monarch":{"xref_id":"0958301"}}}


id: PBO:0089201
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"human REX1BD ortholog, implicated in DNA repair","termid":"PBO:0089201"}


id: GO:1904261
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of basement membrane assembly involved in embryonic body morphogenesis.","definition_xrefs":["GOC:als","GO_REF:0000058","GOC:TermGenie","PMID:23940118"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of developmental process","termid":"GO:0051094"},{"relation_name":"is_a","term_name":"positive regulation of extracellular matrix assembly","termid":"GO:1901203"},{"relation_name":"is_a","term_name":"regulation of basement membrane assembly involved in embryonic body morphogenesis","termid":"GO:1904259"},{"relation_name":"positively_regulates","term_name":"basement membrane assembly involved in embryonic body morphogenesis","termid":"GO:2001197"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"positive regulation of basement membrane assembly involved in embryonic body morphogenesis","synonyms":[{"name":"activation of basement membrane assembly involved in embryonic body morphogenesis","type":"narrow"},{"name":"up regulation of basement membrane assembly involved in embryonic body morphogenesis","type":"exact"},{"name":"up-regulation of basement membrane assembly involved in embryonic body morphogenesis","type":"exact"},{"name":"upregulation of basement membrane assembly involved in embryonic body morphogenesis","type":"exact"}],"termid":"GO:1904261"}


id: MONDO:1012067
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital dyserythropoietic anemia with dyskeratosis and progressive alopecia, non-human animal","termid":"MONDO:1011688"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital dyserythropoietic anemia with dyskeratosis and progressive alopecia, cattle","secondary_identifiers":["OMIA:000313-9913"],"termid":"MONDO:1012067","xrefs":{"Monarch":{"xref_id":"1012067"}}}


id: GO:0001401
data:
  {"annotated_genes":["SJAG_01780","SJAG_03416","SJAG_02355","SJAG_01951"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[62057,70305,73723,90694],"is_not":false,"summary":null,"term":"GO:0001401"}]},"cv_name":"cellular_component","definition":"A large complex of the mitochondrial outer membrane that mediates sorting of some imported proteins to the outer membrane and their assembly in the membrane; functions after import of incoming proteins by the mitochondrial outer membrane translocase complex.","definition_xrefs":["PMID:12891361"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial outer membrane translocase complex","termid":"GO:0005742"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01780":null,"SJAG_01951":null,"SJAG_02355":null,"SJAG_03416":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005739"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005739","GO:0005737","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"SAM complex","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"TOB complex","type":"exact"},{"name":"mitochondrial sorting and assembly machinery complex","type":"exact"}],"termid":"GO:0001401","terms_by_termid":{"GO:0001401":null}}


id: PBO:0090784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COPII-coated vesicle component Erv46","termid":"PBO:0090784"}


id: PBO:0058087
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4304","termid":"PBO:0058087"}


id: PBO:0067853
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 155","termid":"PBO:0067853"}


id: MONDO:0008741
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"PAGOD syndrome is a severe developmental syndrome characterized by multiple congenital anomalies including cardiovascular defects, pulmonary hypoplasia, diaphragmatic defects and genital anomalies.","definition_xrefs":["Orphanet:991"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome without intellectual disability","termid":"MONDO:0015161"},{"relation_name":"is_a","term_name":"46,XY disorder of sex development","termid":"MONDO:0020040"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PAGOD syndrome","secondary_identifiers":["MESH:C537018","MEDGEN:347985","GARD:3086","UMLS:C1859967","OMIM:202660","SCTID:722132007"],"synonyms":[{"name":"Kennerknecht sorgo Oberhoffer syndrome","type":"related"},{"name":"PAGOD syndrome","type":"exact"},{"name":"agonadism with multiple internal malformations","type":"related"},{"name":"pulmonary hypoplasia, hypoplasia of the pulmonary artery, agonadism, omphalocele-diaphragmatic defect, and dextrocardia","type":"related"},{"name":"pulmonary hypoplasia-agonadism-dextrocardia-diaphragmatic hernia syndrome","type":"exact"}],"termid":"MONDO:0008741","xrefs":{"Monarch":{"xref_id":"0008741"}}}


id: GO:0010972
data:
  {"annotated_genes":["SJAG_02563","SJAG_00364","SJAG_02266","SJAG_01084","SJAG_00526","SJAG_00318","SJAG_01205","SJAG_03073","SJAG_03695","SJAG_01044","SJAG_01855","SJAG_03602","SJAG_04332","SJAG_01873","SJAG_05373","SJAG_02332","SJAG_01076","SJAG_06592","SJAG_01605","SJAG_02576","SJAG_00082","SJAG_02098","SJAG_01680","SJAG_03067","SJAG_02723","SJAG_02074","SJAG_01146","SJAG_00640","SJAG_04671","SJAG_01429","SJAG_03854","SJAG_03026","SJAG_00600","SJAG_03942","SJAG_01118","SJAG_04280","SJAG_02771","SJAG_04597","SJAG_02858","SJAG_02592","SJAG_01010","SJAG_04394","SJAG_03927","SJAG_02392","SJAG_04287","SJAG_03160"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[78808,93251,93544,93891,94691,101318,104818,106975,107337,108895,111764,112149,112810,114798],"is_not":false,"summary":null,"term":"GO:0010972"},{"annotations":[100862,116333,90319,94731,101758],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044878"},{"annotations":[71459,112367,91754,72775,75084,117132,109641,99679,100863,99512,94286,106943,79141,117605,117433,79799,116389],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033314"},{"annotations":[116335,96172,98750,94863],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031569"},{"annotations":[92117,100864,117347,90536,75578,112059,72773,99681,101373,118040,79741,106944,89443,91755,109642],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007095"}]},"cv_name":"biological_process","definition":"Any signaling pathway that decreases or inhibits the activity of a cell cycle cyclin-dependent protein kinase to modulate the switch from G2 phase to M phase of the mitotic cell cycle.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of G2/M transition of mitotic cell cycle","termid":"GO:0010389"},{"relation_name":"is_a","term_name":"negative regulation of mitotic cell cycle phase transition","termid":"GO:1901991"},{"relation_name":"is_a","term_name":"negative regulation of cell cycle G2/M phase transition","termid":"GO:1902750"},{"relation_name":"negatively_regulates","term_name":"G2/M transition of mitotic cell cycle","termid":"GO:0000086"}],"gene_count":46,"genes_by_uniquename":{"SJAG_00082":null,"SJAG_00318":null,"SJAG_00364":null,"SJAG_00526":null,"SJAG_00600":null,"SJAG_00640":null,"SJAG_01010":null,"SJAG_01044":null,"SJAG_01076":null,"SJAG_01084":null,"SJAG_01118":null,"SJAG_01146":null,"SJAG_01205":null,"SJAG_01429":null,"SJAG_01605":null,"SJAG_01680":null,"SJAG_01855":null,"SJAG_01873":null,"SJAG_02074":null,"SJAG_02098":null,"SJAG_02266":null,"SJAG_02332":null,"SJAG_02392":null,"SJAG_02563":null,"SJAG_02576":null,"SJAG_02592":null,"SJAG_02723":null,"SJAG_02771":null,"SJAG_02858":null,"SJAG_03026":null,"SJAG_03067":null,"SJAG_03073":null,"SJAG_03160":null,"SJAG_03602":null,"SJAG_03695":null,"SJAG_03854":null,"SJAG_03927":null,"SJAG_03942":null,"SJAG_04280":null,"SJAG_04287":null,"SJAG_04332":null,"SJAG_04394":null,"SJAG_04597":null,"SJAG_04671":null,"SJAG_05373":null,"SJAG_06592":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0044772"},{"rel_name":"negatively_regulates","termid":"GO:0044772"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007049","GO:0008150","GO:0044772"],"is_obsolete":false,"name":"negative regulation of G2/M transition of mitotic cell cycle","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"negative regulation of mitotic entry","type":"exact"}],"termid":"GO:0010972","terms_by_termid":{"GO:0007095":null,"GO:0010972":null,"GO:0031569":null,"GO:0033314":null,"GO:0044878":null}}


id: PBO:0078672
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Lys (anticodon TTT) 5-1","termid":"PBO:0078672"}


id: PBO:0075812
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SSBP3 pseudogene 1","termid":"PBO:0075812"}


id: PBO:0036241
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dysferlin-like membrane trafficking protein Mug65 (predicted)","termid":"PBO:0036241"}


id: SO:0005847
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that is a member of a gene cassette, which is a mobile genetic element.","direct_ancestors":[{"relation_name":"is_a","term_name":"gene_cassette_member","termid":"SO:0005848"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cassette_array_member","synonyms":[{"name":"cassette array member","type":"exact"}],"termid":"SO:0005847"}


id: GO:0019628
data:
  {"annotated_genes":["SJAG_04299"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73840],"is_not":false,"summary":null,"term":"GO:0019628"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of urate, the anion of uric acid, 2,6,8-trioxypurine.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"small molecule catabolic process","termid":"GO:0044282"},{"relation_name":"is_a","term_name":"urate metabolic process","termid":"GO:0046415"},{"relation_name":"is_a","term_name":"purine-containing compound catabolic process","termid":"GO:0072523"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04299":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"urate catabolic process","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:P165-PWY"],"synonyms":[{"name":"urate breakdown","type":"exact"},{"name":"urate catabolism","type":"exact"},{"name":"urate degradation","type":"exact"},{"name":"uric acid catabolic process","type":"exact"}],"termid":"GO:0019628","terms_by_termid":{"GO:0019628":null}}


id: PBO:0076993
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"THAP domain containing 8","termid":"PBO:0076993"}


id: PBO:0086617
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to mitochondria; YNL115C is not an essential gene","termid":"PBO:0086617"}


id: PBO:0083282
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; not conserved in closely related Saccharomyces species; partially overlaps the verified essential gene RRP14","termid":"PBO:0083282"}


id: MOD:01865
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom of a protein N-terminal with the Applied Biosystems mTRAQ light reporter+balance group.","definition_xrefs":["Unimod:888#N-term","OMSSA:208"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mTRAQ light reporter+balance reagent acylated residue","termid":"MOD:01864"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mTRAQ light reporter+balance reagent acylated N-terminal","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"Applied Biosystems mTRAQ(TM) reagent","type":"related"},{"name":"mTRAQ light","type":"related"},{"name":"mTRAQ light on nterm","type":"exact"}],"termid":"MOD:01865"}


id: GO:0033246
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving any antibiotic that contains the condensed beta-lactamthiazolidine ring system.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of amine metabolic process","termid":"GO:0033240"},{"relation_name":"is_a","term_name":"regulation of penicillin metabolic process","termid":"GO:0033244"},{"relation_name":"is_a","term_name":"positive regulation of amide metabolic process","termid":"GO:0034250"},{"relation_name":"is_a","term_name":"positive regulation of sulfur metabolic process","termid":"GO:0051176"},{"relation_name":"is_a","term_name":"positive regulation of small molecule metabolic process","termid":"GO:0062013"},{"relation_name":"positively_regulates","term_name":"penicillin metabolic process","termid":"GO:0042316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006790"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"positively_regulates","termid":"GO:0019748"},{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"positively_regulates","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0006790","GO:0019748","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"positive regulation of penicillin metabolic process","synonyms":[{"name":"positive regulation of penicillin metabolism","type":"exact"}],"termid":"GO:0033246"}


id: PR:G2TRM7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- tam5 gene.","definition_xrefs":["PRO:DNx","UniProtKB:G2TRM7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein tam5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC16E8.18c","synonyms":[{"name":"Spom972h-tam5","type":"exact"},{"name":"transcripts altered in meiosis protein 5 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:G2TRM7"}


id: GO:0008605
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Modulation of the activity of the enzyme protein kinase CK2.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete protein kinase CK2 regulator activity (obsolete GO:0008605)","synonyms":[{"name":"casein kinase II, regulator","type":"exact"},{"name":"protein kinase CK2 regulator activity","type":"exact"},{"name":"protein kinase CK2, intrinsic regulator activity","type":"narrow"}],"termid":"GO:0008605"}


id: PBO:0078549
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TRIM39-RPP21 readthrough","termid":"PBO:0078549"}


id: PBO:0077056
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thrombospondin type 1 domain containing 1 pseudogene 1","termid":"PBO:0077056"}


id: MOD:01564
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom of a protein N-terminal with the Applied Biosystems iTRAQ8plex-118 reporter+balance group.","definition_xrefs":["Unimod:731#N-term"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iTRAQ8plex-118 reporter+balance reagent acylated residue","termid":"MOD:01563"},{"relation_name":"is_a","term_name":"iTRAQ8plex reporter+balance reagent acylated N-terminal","termid":"MOD:01712"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iTRAQ8plex-118 reporter+balance reagent acylated N-terminal","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"},{"name":"Accurate mass for 115, 118, 119 & 121","type":"related"},{"name":"Applied Biosystems iTRAQ(TM) multiplexed quantitation chemistry","type":"related"},{"name":"iTRAQ8plex:13C(6)15N(2)","type":"related"}],"termid":"MOD:01564"}


id: MONDO:0013984
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal recessive nonsyndromic deafness in which the cause of the disease is a mutation in the OTOGL gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hearing loss, autosomal recessive","termid":"MONDO:0019588"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0019497"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0019497"],"is_obsolete":false,"name":"autosomal recessive nonsyndromic hearing loss 84B","secondary_identifiers":["GARD:22647","MEDGEN:767073","UMLS:C3554159","DOID:0110530","OMIM:614944"],"synonyms":[{"name":"DFNB84B","type":"narrow"},{"name":"OTOGL autosomal recessive nonsyndromic deafness","type":"narrow"},{"name":"autosomal recessive deafness 84B","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness 84B","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness caused by mutation in OTOGL","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness type 84B","type":"narrow"},{"name":"autosomal recessive nonsyndromic hearing loss 84B","type":"exact"},{"name":"deafness, autosomal recessive 84B","type":"narrow"},{"name":"deafness, autosomal recessive 84b","type":"narrow"},{"name":"deafness, autosomal recessive type 84B","type":"narrow"}],"termid":"MONDO:0013984","xrefs":{"Monarch":{"xref_id":"0013984"}}}


id: MONDO:0010159
data:
  {"annotated_genes":["SJAG_01620"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87272],"is_not":false,"summary":null,"term":"MONDO:0010159"}]},"cv_name":"mondo","definition":"A rare childhood cancer predisposition syndrome caused by biallelic inheritance of mutations in MLH1, MSH2, MSH6, or PMS2 genes. It is characterized by the development of childhood cancers, usually hematological malignancies and/or brain tumors, and colorectal cancers with multiple intestinal polyps. The majority of patients show signs of neurofibromatosis type 1.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete immunodeficiency with severe reduction in serum IgG and IgA with normal/elevated IgM and normal number of B-cells (obsolete MONDO:0018040)","termid":"MONDO:0018040"},{"relation_name":"excluded_subClassOf","term_name":"DNA repair disease","termid":"MONDO:0021190"},{"relation_name":"is_a","term_name":"hereditary neoplastic syndrome","termid":"MONDO:0015356"},{"relation_name":"is_a","term_name":"mismatch repair cancer syndrome","termid":"MONDO:0031219"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01620":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0021190"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0021190"],"is_obsolete":false,"name":"mismatch repair cancer syndrome 1","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["NCIT:C130202","OMIM:276300","GARD:420","UMLS:C5399763","NORD:1805","SCTID:61665008","MESH:C536928","MEDGEN:1748029"],"synonyms":[{"name":"BTP1 syndrome","type":"exact"},{"name":"CMMR-D","type":"exact"},{"name":"CMMR-D syndrome","type":"exact"},{"name":"CNS tumors with familial polyposis of the colon","type":"related"},{"name":"CNS tumours with familial polyposis of the colon","type":"related"},{"name":"MMR deficiency","type":"related"},{"name":"MMRCS","type":"related"},{"name":"MMRCS1","type":"exact"},{"name":"Turcot Syndrome","type":"exact"},{"name":"Turcot syndrome","type":"related"},{"name":"brain tumor-polyposis syndrome","type":"related"},{"name":"brain tumor-polyposis syndrome 1","type":"exact"},{"name":"childhood cancer syndrome","type":"related"},{"name":"constitutional MIS-match repair deficiency syndrome","type":"exact"},{"name":"constitutional mismatch repair deficiency syndrome","type":"exact"},{"name":"glioma-polyposis syndrome","type":"related"},{"name":"malignant tumors of the central nervous system associated with familial polyposis of the colon","type":"related"},{"name":"malignant tumours of the central nervous system associated with familial polyposis of the colon","type":"related"},{"name":"mismatch repair cancer syndrome","type":"related"},{"name":"mismatch repair cancer syndrome 1","type":"exact"},{"name":"mismatch repair deficiency","type":"related"}],"termid":"MONDO:0010159","terms_by_termid":{"MONDO:0010159":null},"xrefs":{"Monarch":{"xref_id":"0010159"}}}


id: PBO:0113081
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cysteine desulfurase involved in iron-sulfur cluster biogenesis; required for thio-modification of mitochondrial and cytoplasmic tRNAs; involved in DNA damage response by providing iron-sulfur cluster cofactors for DNA repair enzymes; essential protein located predominantly in mitochondria","termid":"PBO:0113081"}


id: PBO:0117379
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HemK methyltransferase 2, ETF1 glutamine and histone H4 lysine","termid":"PBO:0117379"}


id: PBO:0089213
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP 3'tRNA nucleotidyltransferase Cca2","termid":"PBO:0089213"}


id: GO:0060368
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of the Fc receptor mediated stimulatory signaling pathway..","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of signal transduction","termid":"GO:0009966"},{"relation_name":"is_a","term_name":"regulation of immune response","termid":"GO:0050776"},{"relation_name":"regulates","term_name":"Fc receptor mediated stimulatory signaling pathway","termid":"GO:0002431"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of Fc receptor mediated stimulatory signaling pathway","synonyms":[{"name":"regulation of Fc receptor mediated stimulatory signalling pathway","type":"exact"}],"termid":"GO:0060368"}


id: MONDO:0021004
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disease characterized by the presence of brachydactyly, including syndromic and non-syndromic forms.","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"skeletal system disorder","termid":"MONDO:0005172"},{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"brachydactyly","secondary_identifiers":["icd11.foundation:598200019","DOID:0050581","HP:0001156","MEDGEN:67454","SCTID:43476002","UMLS:C0221357","MESH:D059327"],"synonyms":[{"name":"brachydactyly","type":"exact"},{"name":"brachydactyly (disease)","type":"exact"}],"termid":"MONDO:0021004","xrefs":{"Monarch":{"xref_id":"0021004"}}}


id: MONDO:0004498
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A meningioma that arises from the meninges of the sacral region of the spinal cord.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intraspinal meningioma","termid":"MONDO:0001279"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sacral spinal canal and spinal cord meningioma","secondary_identifiers":["DOID:8203","MEDGEN:277626","UMLS:C1335893","NCIT:C5299"],"synonyms":[{"name":"meningioma of sacral spinal canal and spinal cord","type":"exact"},{"name":"meningioma of the sacral spinal canal and spinal cord","type":"exact"},{"name":"sacral intraspinal meningioma","type":"exact"}],"termid":"MONDO:0004498","xrefs":{"Monarch":{"xref_id":"0004498"}}}


id: PR:O94473
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC1919.04 gene.","definition_xrefs":["UniProtKB:O94473","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized membrane protein C1919.04 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1919.04","synonyms":[{"name":"Spom972h-SPCC1919.04","type":"exact"}],"termid":"PR:O94473"}


id: SO:0001321
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"7_cyano_7_deazaguanosine is a modified 7-deazoguanosine.","direct_ancestors":[{"relation_name":"is_a","term_name":"seven_deazaguanosine","termid":"SO:0001316"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"seven_cyano_seven_deazaguanosine","secondary_identifiers":["RNAMOD:047"],"synonyms":[{"name":"7-cyano-7-deazaguanosine","type":"exact"},{"name":"preQ0","type":"exact"},{"name":"seven cyano seven deazaguanosine","type":"exact"}],"termid":"SO:0001321"}


id: PBO:0081026
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger CCCH-type containing 7B","termid":"PBO:0081026"}


id: PBO:0080290
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 54 pseudogene","termid":"PBO:0080290"}


id: MONDO:0009496
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Kniest-like dysplasia with pursed lips and ectopia lentis","secondary_identifiers":["OMIM:245160","MEDGEN:343394","UMLS:C1855606"],"synonyms":[{"name":"Kniest-like dysplasia with pursed lips and ectopia lentis","type":"exact"},{"name":"burton syndrome","type":"related"}],"termid":"MONDO:0009496","xrefs":{"Monarch":{"xref_id":"0009496"}}}


id: GO:0045831
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of light-activated channel activity.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of light-activated channel activity (obsolete GO:0045831)","synonyms":[{"name":"down regulation of light-activated channel activity","type":"exact"},{"name":"down-regulation of light-activated channel activity","type":"exact"},{"name":"downregulation of light-activated channel activity","type":"exact"},{"name":"inhibition of light-activated channel activity","type":"narrow"}],"termid":"GO:0045831"}


id: MONDO:0001472
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A lymphoma that arises from the testis and is not associated with lymphoma in another anatomic site.","definition_xrefs":["NCIT:C6810"],"direct_ancestors":[{"relation_name":"is_a","term_name":"testicular sex cord-stromal neoplasm","termid":"MONDO:0003125"},{"relation_name":"is_a","term_name":"testicular cancer","termid":"MONDO:0005447"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"testicular lymphoma","secondary_identifiers":["DOID:12253","ICD9:186.9","ONCOTREE:TLYM","UMLS:C0349644","MEDGEN:138110","SCTID:277664004"],"synonyms":[{"name":"TLYM","type":"related"},{"name":"lymphoma of testis","type":"exact"},{"name":"lymphoma of the testis","type":"exact"},{"name":"malignant lymphoma of testis","type":"exact"},{"name":"primary testicular lymphoma","type":"exact"},{"name":"testicular lymphoma","type":"exact"}],"termid":"MONDO:0001472","xrefs":{"Monarch":{"xref_id":"0001472"}}}


id: MONDO:0022599
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"brachydactyly anonychia","termid":"MONDO:0022599","xrefs":{"Monarch":{"xref_id":"0022599"}}}


id: MOD:02064
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that contains an D-serine residue crosslinked to one or more amino acid residues.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"D-serine (Ser)","termid":"MOD:00202"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"crosslinked D-serine residue","synonyms":[{"name":"XlnkDSer","type":"exact"}],"termid":"MOD:02064"}


id: PBO:0029343
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_mitochondrial_tRNA_3'-end_processing","termid":"PBO:0029343"}


id: GO:0060701
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that decreases the rate, frequency, or extent of ribonuclease activity, catalysis of the hydrolysis of phosphodiester bonds in chains of RNA.","definition_xrefs":["GOC:dph","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of ribonuclease activity (obsolete GO:0060701)","termid":"GO:0060701"}


id: MONDO:0030839
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"thyroid hormone metabolism, abnormal","termid":"MONDO:0031432"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thyroid hormone metabolism, abnormal, 2","secondary_identifiers":["MEDGEN:1812066","OMIM:619855","UMLS:C5676976"],"synonyms":[{"name":"THMA2","type":"exact"},{"name":"thyroid hormone metabolism, abnormal, 2","type":"exact"}],"termid":"MONDO:0030839","xrefs":{"Monarch":{"xref_id":"0030839"}}}


id: PBO:0059620
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ATP8 pseudogene 1","termid":"PBO:0059620"}


id: PBO:0076232
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Suv3 like RNA helicase","termid":"PBO:0076232"}


id: MONDO:0030428
data:
  {"annotated_genes":["SJAG_02912","SJAG_00907","SJAG_03756"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86540,86541,86542],"is_not":false,"summary":null,"term":"MONDO:0030428"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"immunodeficiency disease","termid":"MONDO:0021094"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00907":null,"SJAG_02912":null,"SJAG_03756":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"immunodeficiency 85 and autoimmunity","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1794186","UMLS:C5561976","OMIM:619510"],"synonyms":[{"name":"IMD85","type":"exact"}],"termid":"MONDO:0030428","terms_by_termid":{"MONDO:0030428":null},"xrefs":{"Monarch":{"xref_id":"0030428"}}}


id: PATO:0002411
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A color consisting of yellow and brown hue.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"brown","termid":"PATO:0000952"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"yellow brown","termid":"PATO:0002411"}


id: PBO:0051896
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"integrin subunit alpha 5","termid":"PBO:0051896"}


id: MONDO:0005900
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Inflammation of the parotid glands.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"parotid disorder","termid":"MONDO:0005899"},{"relation_name":"is_a","term_name":"inflammatory disease","termid":"MONDO:0021166"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"parotitis","secondary_identifiers":["MEDGEN:45335","MESH:D010309","DOID:10301","EFO:0007423","NCIT:C114281","UMLS:C0030583","SCTID:14756005"],"synonyms":[{"name":"inflammation of parotid gland","type":"exact"},{"name":"parotid gland inflammation","type":"exact"}],"termid":"MONDO:0005900","xrefs":{"Monarch":{"xref_id":"0005900"}}}


id: PBO:0071733
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L39 pseudogene 31","termid":"PBO:0071733"}


id: FYPO:0002687
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which telomere length is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal telomere morphology during vegetative growth","termid":"FYPO:0006513"},{"relation_name":"is_a","term_name":"normal telomere length","termid":"FYPO:0006515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal telomere length during vegetative growth","synonyms":[{"name":"normal telomere length during mitotic cell cycle","type":"related"}],"termid":"FYPO:0002687"}


id: PBO:0072662
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"reticulon 3 pseudogene 1","termid":"PBO:0072662"}


id: GO:2001288
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of caveolin-mediated endocytosis.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of endocytosis","termid":"GO:0045807"},{"relation_name":"is_a","term_name":"regulation of caveolin-mediated endocytosis","termid":"GO:2001286"},{"relation_name":"positively_regulates","term_name":"caveolin-mediated endocytosis","termid":"GO:0072584"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0016192"],"is_obsolete":false,"name":"positive regulation of caveolin-mediated endocytosis","synonyms":[{"name":"positive regulation of caveolae-dependent endocytosis","type":"exact"},{"name":"positive regulation of caveolae-mediated endocytosis","type":"exact"},{"name":"positive regulation of caveolin-dependent endocytosis","type":"exact"}],"termid":"GO:2001288"}


id: FYPO:0001060
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of glutamate into the cell occurs to a lower extent than normal in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal glutamate import during vegetative growth","termid":"FYPO:0001059"},{"relation_name":"is_a","term_name":"decreased amino acid import during vegetative growth","termid":"FYPO:0001360"},{"relation_name":"is_a","term_name":"decreased glutamate import","termid":"FYPO:0001649"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"decreased glutamate import during vegetative growth","synonyms":[{"name":"decreased L-glutamate import across plasma membrane during vegetative growth","type":"exact"},{"name":"decreased L-glutamate import during vegetative growth","type":"exact"},{"name":"decreased glutamate import during mitotic cell cycle","type":"related"},{"name":"decreased glutamate import into cell during vegetative growth","type":"exact"},{"name":"decreased glutamate uptake during vegetative growth","type":"exact"},{"name":"reduced glutamate import during vegetative growth","type":"exact"}],"termid":"FYPO:0001060"}


id: MONDO:0008632
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Aquagenic urticaria is a rare condition in which urticaria (hives) develop rapidly after the skin comes in contact with water, regardless of its temperature. It most commonly affects women and symptoms often start around the onset of puberty. Some patients report itching too. It is a form of physical urticaria . The exact underlying cause of aquagenic urticaria is currently unknown. Due to the rarity of the condition, there is very limited data regarding the effectiveness of individual treatments; however, various medications and therapies have been used with variable success.","direct_ancestors":[{"relation_name":"is_a","term_name":"urticaria","termid":"MONDO:0005492"},{"relation_name":"is_a","term_name":"hereditary skin disorder","termid":"MONDO:0100118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"urticaria, aquagenic","secondary_identifiers":["UMLS:C0263334","SCTID:89870006","MEDGEN:82663","ICD9:708.8","MESH:C562481","OMIM:191850"],"synonyms":[{"name":"Physical urticaria","type":"exact"},{"name":"aquagenic urticaria","type":"related"},{"name":"urticaria, aquagenic","type":"exact"}],"termid":"MONDO:0008632","xrefs":{"Monarch":{"xref_id":"0008632"}}}


id: GO:0050422
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3alpha(S)-strictosidine + H2O = D-glucose + strictosidine aglycone.","definition_xrefs":["RHEA:12917","EC:3.2.1.105"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta-glucosidase activity","termid":"GO:0008422"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016798"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016798","GO:0016787"],"is_obsolete":false,"name":"strictosidine beta-glucosidase activity","secondary_identifiers":["KEGG_REACTION:R03820","MetaCyc:STRICTOSIDINE-BETA-GLUCOSIDASE-RXN"],"synonyms":[{"name":"strictosidine b-glucosidase activity","type":"exact"},{"name":"strictosidine beta-D-glucohydrolase activity","type":"related"}],"termid":"GO:0050422"}


id: GO:1905677
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of adaptive immune effector response.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","ISBN:9781405196833"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of adaptive immune response","termid":"GO:0002819"},{"relation_name":"regulates","term_name":"adaptive immune effector response","termid":"GO:0090718"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of adaptive immune effector response","termid":"GO:1905677"}


id: GO:0001878
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a yeast species.","definition_xrefs":["PMID:14707091"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to fungus","termid":"GO:0009620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to yeast","termid":"GO:0001878"}


id: PBO:0041263
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement C1q binding protein","termid":"PBO:0041263"}


id: PBO:0063142
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostate and testis expressed 2","termid":"PBO:0063142"}


id: MONDO:0013809
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete cerebellar ataxia, neuropathy, and vestibular areflexia syndrome (obsolete MONDO:0013809)","termid":"MONDO:0013809","xrefs":{"Monarch":{"xref_id":"0013809"}}}


id: MONDO:0019613
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A hormone producing or non-producing pituitary gland adenoma not associated with a hormonal syndrome.","definition_xrefs":["NCIT:C4348"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-functioning pituitary gland neoplasm","termid":"MONDO:0003603"},{"relation_name":"is_a","term_name":"pituitary gland adenoma","termid":"MONDO:0006373"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-functioning pituitary adenoma","secondary_identifiers":["SCTID:254962005","GARD:19159","EFO:0008516","Orphanet:91349","DOID:5715","icd11.foundation:1197752358","ICD10CM:D35.2"],"synonyms":[{"name":"NFPA","type":"exact"},{"name":"functionless adenoma of pituitary","type":"exact"},{"name":"functionless adenoma of pituitary gland","type":"exact"},{"name":"functionless adenoma of the pituitary","type":"exact"},{"name":"functionless adenoma of the pituitary gland","type":"exact"},{"name":"functionless pituitary adenoma","type":"exact"},{"name":"functionless pituitary gland adenoma","type":"exact"},{"name":"non-functioning adenoma of pituitary","type":"exact"},{"name":"non-functioning adenoma of pituitary gland","type":"exact"},{"name":"non-functioning adenoma of the pituitary","type":"exact"},{"name":"non-functioning adenoma of the pituitary gland","type":"exact"},{"name":"non-functioning pituitary adenoma","type":"exact"},{"name":"non-functioning pituitary gland adenoma","type":"exact"},{"name":"non-secretory adenoma of pituitary","type":"exact"},{"name":"non-secretory adenoma of pituitary gland","type":"exact"},{"name":"non-secretory adenoma of the pituitary","type":"exact"},{"name":"non-secretory adenoma of the pituitary gland","type":"exact"},{"name":"non-secretory pituitary adenoma","type":"exact"},{"name":"non-secretory pituitary gland adenoma","type":"exact"},{"name":"nonfunctional pituitary gland adenoma","type":"exact"},{"name":"silent pituitary gland adenoma","type":"exact"}],"termid":"MONDO:0019613","xrefs":{"Monarch":{"xref_id":"0019613"}}}


id: PBO:0080985
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZBTB20 antisense RNA 1","termid":"PBO:0080985"}


id: GO:1990124
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A ribonucleoprotein complex containing both protein and messenger RNA (mRNA) molecules.","definition_xrefs":["PMID:21915786","GOC:bf","PMID:15574591"],"gene_count":0,"genotype_count":0,"name":"obsolete messenger ribonucleoprotein complex (obsolete GO:1990124)","synonyms":[{"name":"mRNA-protein complex","type":"exact"},{"name":"mRNP","type":"exact"},{"name":"mRNP complex","type":"exact"},{"name":"messenger ribonucleoprotein particle","type":"related"}],"termid":"GO:1990124"}


id: PBO:0059549
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrially encoded tRNA-Gln (CAA/G)","termid":"PBO:0059549"}


id: GO:0000394
data:
  {"annotated_genes":["SJAG_03913","SJAG_03328","SJAG_01260","SJAG_04907","SJAG_00754","SJAG_01791","SJAG_00956"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[74141,78258,74138],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006388"},{"annotations":[79310,73259,71669,74228],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000379"}]},"cv_name":"biological_process","definition":"Splicing of RNA via recognition of the folded RNA structure that brings the 5' and 3' splice sites into proximity and cleavage of the RNA at both the 3' and 5' splice sites by an endonucleolytic mechanism, followed by ligation of the exons.","definition_xrefs":["ISBN:0879695897","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA splicing","termid":"GO:0008380"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00754":null,"SJAG_00956":null,"SJAG_01260":null,"SJAG_01791":null,"SJAG_03328":null,"SJAG_03913":null,"SJAG_04907":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"RNA splicing, via endonucleolytic cleavage and ligation","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"mRNA splicing","type":"broad"}],"termid":"GO:0000394","terms_by_termid":{"GO:0000379":null,"GO:0006388":null}}


id: MONDO:0015254
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An infectious disease caused by parasitic trematodes of the genus Schistosoma that colonize human blood vessels and release eggs that can cause granulomatous reactions leading to acute (swimmer's itch or acute schistosomiasis syndrome) or chronic disease. Depending on where the eggs lodge, manifestations of chronic schistosomiasis can include diarrhea, abdominal pain, loss of appetite, anemia (intestines), hepatosplenism, periportal fibrosis with portal hypertension (liver), urogenital inflammation and scarring, hematuria and dysuria (genitourinary system). Other patients may be asymptomatic.","definition_xrefs":["Orphanet:1247"],"direct_ancestors":[{"relation_name":"is_a","term_name":"helminthiasis","termid":"MONDO:0004664"},{"relation_name":"is_a","term_name":"vector-borne disease","termid":"MONDO:0100120"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"schistosomiasis","secondary_identifiers":["UMLS:C0036323","ICD9:120.9","MedDRA:10039603","MEDGEN:48573","SCTID:10087007","EFO:1001475","GARD:9687","icd11.foundation:1194562592","ICD9:120.8","DOID:1395","MESH:D012552","NCIT:C35000"],"synonyms":[{"name":"Bilharzia","type":"exact"},{"name":"bilharziasis","type":"exact"},{"name":"schistosomiasis","type":"exact"},{"name":"snail fever","type":"exact"}],"termid":"MONDO:0015254","xrefs":{"Monarch":{"xref_id":"0015254"}}}


id: MONDO:0020461
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"eyelid disorder","termid":"MONDO:0003382"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"epiblepharon","secondary_identifiers":["ICD9:743.63","Orphanet:99169","SCTID:253212001","GARD:19671","icd11.foundation:1757021264","UMLS:C0344503","MEDGEN:488856"],"termid":"MONDO:0020461","xrefs":{"Monarch":{"xref_id":"0020461"}}}


id: PBO:0076910
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor A, mitochondrial pseudogene 2","termid":"PBO:0076910"}


id: GO:0033683
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process that results in the endonucleolytic cleavage of the damaged strand of DNA. The incision occurs at the junction of single-stranded DNA and double-stranded DNA that is formed when the DNA duplex is unwound.","definition_xrefs":["GOC:elh","PMID:8631896"],"gene_count":0,"genotype_count":0,"name":"obsolete nucleotide-excision repair, DNA incision (obsolete GO:0033683)","synonyms":[{"name":"DNA incision involved in nucleotide-excision repair","type":"exact"},{"name":"nucleic acid cleavage involved in nucleotide-excision repair","type":"exact"}],"termid":"GO:0033683"}


id: MONDO:0971108
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"persistent truncus arteriosus","termid":"MONDO:0018072"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"common arterial trunk with pulmonary dominance and interrupted aortic arch","secondary_identifiers":["Orphanet:665058","UMLS:C4546068","MEDGEN:1612764"],"termid":"MONDO:0971108","xrefs":{"Monarch":{"xref_id":"0971108"}}}


id: PBO:0062026
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily N member 1 pseudogene","termid":"PBO:0062026"}


id: GO:0000073
data:
  {"annotated_genes":["SJAG_00773","SJAG_04745","SJAG_00794"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[76095,78167,95634],"is_not":false,"summary":null,"term":"GO:0000073"}]},"cv_name":"biological_process","definition":"The release of duplicated mitotic spindle pole bodies (SPBs) that begins with the nucleation of microtubules from each SPB within the nucleus, leading to V-shaped spindle microtubules. Interpolar microtubules that elongate from each pole are interconnected, forming overlapping microtubules. Capturing and antiparallel sliding apart of microtubules promotes the initial separation of the SPB.","definition_xrefs":["GOC:vw","GOC:sgd_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spindle pole body separation","termid":"GO:0110100"},{"relation_name":"is_a","term_name":"mitotic cell cycle process","termid":"GO:1903047"},{"relation_name":"part_of","term_name":"mitotic spindle formation (spindle phase one)","termid":"GO:0061804"},{"relation_name":"part_of","term_name":"mitotic spindle pole body organization","termid":"GO:1905047"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00773":null,"SJAG_00794":null,"SJAG_04745":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0000226"},{"rel_name":"part_of","termid":"GO:0000070"},{"rel_name":"part_of","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0000226","GO:0007049","GO:0000070","GO:0044085","GO:0007010","GO:0008150"],"is_obsolete":false,"name":"initial mitotic spindle pole body separation","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0030475"],"termid":"GO:0000073","terms_by_termid":{"GO:0000073":null}}


id: RO:0002120
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":" Relation between a neuron and an anatomical structure (including cells) that it chemically synapses to.\\n        ","direct_ancestors":[{"relation_name":"is_a","term_name":"downstream_in_neural_circuit_with","termid":"RO:0000302"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synapsed_to","termid":"RO:0002120"}


id: PBO:0074383
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMG6 nonsense mediated mRNA decay factor","termid":"PBO:0074383"}


id: MONDO:0008438
data:
  {"annotated_genes":["SJAG_04566","SJAG_01530"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86824,86825],"is_not":false,"summary":null,"term":"MONDO:0008438"}]},"cv_name":"mondo","definition":"Autosomal dominant spastic paraplegia type 4 (SPG4) is a form of hereditary spastic paraplegia with high intrafamilial clinical variability, characterized in most cases as a pure phenotype with an adult onset (mainly the 3rd to 5th decade of life, but that can present at any age) of progressive gait impairment due to bilateral lower-limb spasticity and weakness as well as very mild proximal weakness and urinary urgency. In some cases, a complex phenotype is also reported with additional manifestations including cognitive impairment, cerebellar ataxia, epilepsy and neuropathy. A faster disease progression is noted in patients with a later age of onset.","definition_xrefs":["Orphanet:100985"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary spastic paraplegia","termid":"MONDO:0019064"},{"relation_name":"is_a","term_name":"SPAST-related motor disorder","termid":"MONDO:0100523"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01530":null,"SJAG_04566":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"hereditary spastic paraplegia 4","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["NCIT:C129981","OMIM:182601","MESH:C536865","SCTID:723820001","GARD:4925","DOID:0110792","UMLS:C1866855","MEDGEN:401097"],"synonyms":[{"name":"FSP2","type":"related"},{"name":"SPAST hereditary spastic paraplegia","type":"exact"},{"name":"SPG4","type":"exact"},{"name":"autosomal dominant spastic paraplegia 4","type":"exact"},{"name":"autosomal dominant spastic paraplegia type 4","type":"exact"},{"name":"familial spastic paraplegia autosomal dominant 2","type":"related"},{"name":"familial spastic paraplegia, autosomal dominant, 2","type":"related"},{"name":"hereditary spastic paraplegia 4","type":"exact"},{"name":"hereditary spastic paraplegia caused by mutation in SPAST","type":"exact"},{"name":"hereditary spastic paraplegia type 4","type":"exact"},{"name":"spastic paraplegia 4","type":"related"},{"name":"spastic paraplegia 4, autosomal dominant","type":"related"}],"termid":"MONDO:0008438","terms_by_termid":{"MONDO:0008438":null},"xrefs":{"Monarch":{"xref_id":"0008438"}}}


id: GO:0097610
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A furrow that may be found on the cell surface. Examples include the cingulum and sulcus found in some dinoflagellates.","definition_xrefs":["GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"cell surface","termid":"GO:0009986"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0009986"}],"interesting_parent_ids":["GO:0005575","GO:0009986"],"is_obsolete":false,"name":"cell surface furrow","synonyms":[{"name":"cell surface groove","type":"related"},{"name":"furrow","type":"broad"},{"name":"groove","type":"broad"}],"termid":"GO:0097610"}


id: PBO:0057458
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 577","termid":"PBO:0057458"}


id: PBO:0046120
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 4E binding protein 3","termid":"PBO:0046120"}


id: PBO:0058959
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MKRN2 opposite strand","termid":"PBO:0058959"}


id: MONDO:0011614
data:
  {"annotated_genes":["SJAG_04499"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86299],"is_not":false,"summary":null,"term":"MONDO:0011614"}]},"cv_name":"mondo","definition":"3-hydroxy-3-methylglutaryl-CoA synthase deficiency (HMG-CoA synthase deficiency) is a rare autosomal recessively inherited disorder of ketone body metabolism, reported in less than 20 patients to date, characterized clinically by episodes of decompensation (often associated with gastroenteritis or fasting) that present with vomiting, lethargy, hepatomegaly, non ketotic hypoglycemia and, in rare cases, coma. Patients are mostly asymptomatic between acute epidodes. HMG-CoA synthase deficiency requires an early diagnosis in order to avoid hypoglycemic crises that can lead to permanent brain damage or death.","definition_xrefs":["Orphanet:35701"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disorder of fatty acid oxidation and ketogenesis","termid":"MONDO:0017713"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04499":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0002525"],"is_obsolete":false,"name":"3-hydroxy-3-methylglutaryl-CoA synthase deficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0081168","GARD:2712","UMLS:C2751532","OMIM:605911","SCTID:725286002","MEDGEN:414399","MESH:C567784","NANDO:2200498"],"synonyms":[{"name":"3-hydroxy-3-methylglutaryl-CoA synthase deficiency","type":"exact"},{"name":"3-hydroxy-3-methylglutaryl-CoA synthase-2 deficiency","type":"related"},{"name":"HMG CoA synthetase deficiency","type":"related"},{"name":"HMG-CoA synthase deficiency","type":"exact"},{"name":"HMG-CoA synthase-2 deficiency","type":"exact"},{"name":"HMGCS2D","type":"related"},{"name":"Hmgcs2 deficiency","type":"related"},{"name":"mitochondrial HMG-Coa synthase deficiency","type":"related"}],"termid":"MONDO:0011614","terms_by_termid":{"MONDO:0011614":null},"xrefs":{"Monarch":{"xref_id":"0011614"}}}


id: PBO:0072613
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal L24 domain containing 1 pseudogene 8","termid":"PBO:0072613"}


id: PBO:0003122
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.11.1.-","termid":"PBO:0003122"}


id: PBO:0056747
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit","termid":"PBO:0056747"}


id: PBO:0076489
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TARDBP pseudogene 4","termid":"PBO:0076489"}


id: MONDO:0007566
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Multiple self-healing squamous epithelioma (also known as Ferguson-Smith disease (FSD)) is a rare inherited skin cancer syndrome characterized by the development of multiple locally invasive skin tumors resembling keratoacanthomas of the face and limbs which usually heal spontaneously after several months leaving pitted scars.","definition_xrefs":["Orphanet:65748"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary neoplastic syndrome","termid":"MONDO:0015356"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"multiple self-healing squamous epithelioma","secondary_identifiers":["GARD:3090","MEDGEN:154270","SCTID:254659009","MESH:C536150","NCIT:C4461","DOID:5585","OMIM:132800","UMLS:C0546476"],"synonyms":[{"name":"ESS1","type":"related"},{"name":"ESS1 (formerly)","type":"related"},{"name":"ESS1, formerly","type":"related"},{"name":"Ferguson-Smith disease","type":"exact"},{"name":"Ferguson-Smith syndrome","type":"exact"},{"name":"Ferguson-Smith tumor","type":"exact"},{"name":"Ferguson-Smith tumour","type":"exact"},{"name":"Ferguson-Smith type epithelioma","type":"related"},{"name":"Ferguson-Smith-type epithelioma","type":"related"},{"name":"MSSE","type":"exact"},{"name":"familial primary self-healing squamous epithelioma of the skin, Ferguson-Smith type","type":"exact"},{"name":"multiple keratoacanthoma, Ferguson-Smith type","type":"exact"},{"name":"multiple self healing epithelioma of Ferguson-Smith","type":"exact"},{"name":"multiple self healing squamous epithelioma","type":"related"},{"name":"multiple self-healing epithelioma of Ferguson-Smith","type":"exact"},{"name":"multiple self-healing squamous epithelioma","type":"exact"},{"name":"multiple self-healing squamous epithelioma, susceptibility to","type":"related"},{"name":"self-healing squamous epithelioma type 1","type":"exact"}],"termid":"MONDO:0007566","xrefs":{"Monarch":{"xref_id":"0007566"}}}


id: PBO:0044178
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"catenin beta interacting protein 1","termid":"PBO:0044178"}


id: PBO:0086788
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies; physical interaction with Atg27p suggests a possible role in autophagy","termid":"PBO:0086788"}


id: GO:0070791
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the cleistothecium over time, from its formation to the mature structure. The cleistothecium is a closed sexual fruiting body that contains ascospores in linear asci, characteristic of some filamentous Ascomycete fungi such as members of the genera Aspergillus and Emericella.","definition_xrefs":["ISBN:0471522295","PMID:17446882"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sporocarp development involved in sexual reproduction","termid":"GO:0000909"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cleistothecium development","termid":"GO:0070791"}


id: MONDO:0017445
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"skeletal dysplasia","termid":"MONDO:0018230"},{"relation_name":"is_a","term_name":"dysostosis","termid":"MONDO:0018234"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"acheiria","secondary_identifiers":["icd11.foundation:1428065029","Orphanet:294983","MEDGEN:488815","SCTID:371199008","GARD:21196","UMLS:C0265594"],"synonyms":[{"name":"congenital absence of hand","type":"exact"}],"termid":"MONDO:0017445","xrefs":{"Monarch":{"xref_id":"0017445"}}}


id: MONDO:0009102
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diaminopentanuria","secondary_identifiers":["MEDGEN:347412","OMIM:222350","MESH:C565630","UMLS:C1857285"],"synonyms":[{"name":"Diaminopentanuria","type":"exact"},{"name":"cystine-lysinuria","type":"related"}],"termid":"MONDO:0009102","xrefs":{"Monarch":{"xref_id":"0009102"}}}


id: GO:2000369
data:
  {"annotated_genes":["SJAG_04465","SJAG_00649","SJAG_04052"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[111351,111998,119189],"is_not":false,"summary":null,"term":"GO:2000369"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of clathrin-mediated endocytosis.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of receptor-mediated endocytosis","termid":"GO:0048259"},{"relation_name":"regulates","term_name":"clathrin-dependent endocytosis","termid":"GO:0072583"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00649":null,"SJAG_04052":null,"SJAG_04465":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0016192","GO:0006810"],"is_obsolete":false,"name":"regulation of clathrin-dependent endocytosis","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of clathrin coated pit-dependent endocytosis","type":"exact"},{"name":"regulation of clathrin-mediated endocytosis","type":"exact"}],"termid":"GO:2000369","terms_by_termid":{"GO:2000369":null}}


id: PBO:0089570
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA NAD-cap (NAD-forming) hydrolase/RNA pyrophosphohydrolase Din1","termid":"PBO:0089570"}


id: GO:0140118
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A histone reader that recognizes a histone H3 acetylated at lysine 23.","definition_xrefs":["PMID:21164480"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H3 reader activity","termid":"GO:0140006"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0030674"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0140566"}],"interesting_parent_ids":["GO:0140566","GO:0003674","GO:0060090","GO:0030674"],"is_obsolete":false,"name":"histone H3K23ac reader activity","synonyms":[{"name":"histone H3K23ac modified histone binding","type":"related"}],"termid":"GO:0140118"}


id: GO:0097615
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which an organism effects a change in the type IV pilus-dependent motility of a symbiont organism (i.e. the controlled movement of a bacterial cell which is dependent on the presence of type IV pili, and which includes social gliding motility and twitching motility). The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:12037568","GOC:als"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by host of symbiont type IV pilus-dependent motility (obsolete GO:0097615)","synonyms":[{"name":"modulation by host of bacterial type IV pilus-dependent motility","type":"exact"}],"termid":"GO:0097615"}


id: PBO:0039851
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho GTPase activating protein 18","termid":"PBO:0039851"}


id: MONDO:0017039
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"interstitial lung disease","termid":"MONDO:0015925"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"drug or radiation exposure-related interstitial lung disease","secondary_identifiers":["Orphanet:264978","GARD:20942","UMLS:C5680746","MEDGEN:1843006"],"termid":"MONDO:0017039","xrefs":{"Monarch":{"xref_id":"0017039"}}}


id: GO:0098927
data:
  {"annotated_genes":["SJAG_01309"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[75026],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045022"}]},"cv_name":"biological_process","definition":"A cellular transport process in which transported substances are moved in membrane-bounded vesicles between endosomal compartments, e.g, between early endosome and sorting endosome.","definition_xrefs":["PMID:10930469","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endosomal transport","termid":"GO:0016197"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01309":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0016192","GO:0008150"],"is_obsolete":false,"name":"vesicle-mediated transport between endosomal compartments","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0098927","terms_by_termid":{"GO:0045022":null}}


id: PBO:0073250
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin 3","termid":"PBO:0073250"}


id: GO:0015754
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which D-allose is transported across a lipid bilayer, from one side of a membrane to the other. Allose is an aldohexose similar to glucose, differing only in the configuration of the hydroxyl group of C-3.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexose transmembrane transport","termid":"GO:0008645"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"D-allose transmembrane transport","synonyms":[{"name":"allose transmembrane transport","type":"narrow"},{"name":"allose transport","type":"related"}],"termid":"GO:0015754"}


id: GO:0021522
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which neuroepithelial cells in the ventral neural tube acquire specialized structural and/or functional features of motor neurons. Motor neurons innervate an effector (muscle or glandular) tissue and are responsible for transmission of motor impulses from the brain to the periphery. Differentiation includes the processes involved in commitment of a cell to a specific fate.","definition_xrefs":["GOC:dgh","GOC:dph","GOC:jid","GO_REF:0000021","GOC:cls","PMID:11262869"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation in spinal cord","termid":"GO:0021515"},{"relation_name":"is_a","term_name":"central nervous system neuron differentiation","termid":"GO:0021953"},{"relation_name":"part_of","term_name":"ventral spinal cord development","termid":"GO:0021517"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"spinal cord motor neuron differentiation","termid":"GO:0021522"}


id: MONDO:0013172
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare genetic syndrome with central nervous system malformations characterized by severe developmental delay, neonatal hypotonia, seizures, optic nerve hypoplasia and distinct central nervous system malformations including extensive bilateral polymicrogyria, dysplastic or absent corpus callosum and malformed brainstem with loss of demarcation of the pontomedullary junction.","definition_xrefs":["Orphanet:250972"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"excluded_subClassOf","term_name":"obsolete syndrome with a central nervous system malformation as major feature (obsolete MONDO:0015220)","termid":"MONDO:0015220"},{"relation_name":"excluded_subClassOf","term_name":"obsolete syndromic optic nerve hypoplasia (obsolete MONDO:0015310)","termid":"MONDO:0015310"},{"relation_name":"excluded_subClassOf","term_name":"obsolete cerebral malformation with epilepsy (obsolete MONDO:0015655)","termid":"MONDO:0015655"},{"relation_name":"is_a","term_name":"complex cortical dysplasia with other brain malformations","termid":"MONDO:0000904"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polymicrogyria with optic nerve hypoplasia","secondary_identifiers":["UMLS:C2750798","OMIM:613180","GARD:20687","MEDGEN:442565","MESH:C567715"],"synonyms":[{"name":"CDCBM8","type":"related"},{"name":"cortical dysplasia, Complex, with Other brain malformations 8","type":"related"},{"name":"cortical dysplasia, complex, with other brain malformations 8","type":"related"},{"name":"polymicrogyria with optic nerve hypoplasia","type":"exact"}],"termid":"MONDO:0013172","xrefs":{"Monarch":{"xref_id":"0013172"}}}


id: PBO:0091199
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Lys","termid":"PBO:0091199"}


id: PBO:0058808
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 7850","termid":"PBO:0058808"}


id: MONDO:1012084
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"tetragametic chimerism, non-human animal","termid":"MONDO:1011918"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetragametic chimerism, pig","secondary_identifiers":["OMIA:000393-9823"],"termid":"MONDO:1012084","xrefs":{"Monarch":{"xref_id":"1012084"}}}


id: PR:O14082
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPACUNK4.17 gene.","definition_xrefs":["UniProtKB:O14082","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein UNK4.17 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPACUNK4.17","synonyms":[{"name":"Spom972h-SPACUNK4.17","type":"exact"}],"termid":"PR:O14082"}


id: PBO:0065970
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAD51 paralog D","termid":"PBO:0065970"}


id: PR:O14202
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mug116 gene.","definition_xrefs":["UniProtKB:O14202","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 116 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC5D6.10c","synonyms":[{"name":"Spom972h-mug116","type":"exact"}],"termid":"PR:O14202"}


id: PBO:0065523
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pentatricopeptide repeat domain 3","termid":"PBO:0065523"}


id: GO:0003399
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of a cytoneme are shaped. A cytoneme is a long, thin and polarized actin-based cytoplasmic extension that projects from a cell.","definition_xrefs":["GOC:ascb_2009","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane bounded cell projection morphogenesis","termid":"GO:0120039"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cytoneme morphogenesis","termid":"GO:0003399"}


id: PR:O74517
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- saf1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74517"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein saf1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC663.11","synonyms":[{"name":"Spom972h-saf1","type":"exact"}],"termid":"PR:O74517"}


id: GO:0140352
data:
  {"annotated_genes":["SJAG_02004","SJAG_01129","SJAG_01722","SJAG_03763","SJAG_04343","SJAG_01973","SJAG_07004","SJAG_02368","SJAG_03499","SJAG_02344","SJAG_00233","SJAG_04960","SJAG_03951","SJAG_00661","SJAG_03754","SJAG_04517","SJAG_04167","SJAG_03363","SJAG_03357","SJAG_01669","SJAG_02587","SJAG_02166","SJAG_00826","SJAG_01448","SJAG_03808","SJAG_01925","SJAG_01772","SJAG_03718","SJAG_02320","SJAG_01183","SJAG_02572","SJAG_02152","SJAG_02366","SJAG_03915","SJAG_04058","SJAG_01145","SJAG_01048","SJAG_03536","SJAG_01697","SJAG_03005","SJAG_02518","SJAG_03817","SJAG_00355","SJAG_04509","SJAG_04044","SJAG_01563","SJAG_00280","SJAG_00332","SJAG_04966","SJAG_03079","SJAG_02602","SJAG_03246","SJAG_03864","SJAG_01541","SJAG_00430","SJAG_03938","SJAG_04258","SJAG_02012","SJAG_02753"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[111294],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140159"},{"annotations":[71749,94187,78342,88718,91799,95355,70630,72352,89084,97774,92594,102983,105397,73677,71842,113241,91471,92341,117467,95321,71085,88312,71413],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006887"},{"annotations":[57573,61761,119080,69266,117797],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140115"},{"annotations":[114073],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140116"},{"annotations":[107507],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090539"},{"annotations":[116119],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0180029"},{"annotations":[100502],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0045921"},{"annotations":[112677],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097623"},{"annotations":[66916,61056,58159,67227],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0120029"},{"annotations":[94171,88219,98718],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0017157"},{"annotations":[67223],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036376"},{"annotations":[80136,80510,92655,90903,75425,70116,60322,118548],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0006904"},{"annotations":[66285,114487,88945,118056,91072,102242,60323,99873],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0090522"},{"annotations":[118283,58564,63819],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990961"}]},"cv_name":"biological_process","definition":"The directed movement of some substance from a cell, into the extracellular region. This may occur via transport across the plasma membrane or via exocytosis.","definition_xrefs":["GOC:pg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transport","termid":"GO:0006810"},{"relation_name":"is_a","term_name":"cellular process","termid":"GO:0009987"}],"gene_count":59,"genes_by_uniquename":{"SJAG_00233":null,"SJAG_00280":null,"SJAG_00332":null,"SJAG_00355":null,"SJAG_00430":null,"SJAG_00661":null,"SJAG_00826":null,"SJAG_01048":null,"SJAG_01129":null,"SJAG_01145":null,"SJAG_01183":null,"SJAG_01448":null,"SJAG_01541":null,"SJAG_01563":null,"SJAG_01669":null,"SJAG_01697":null,"SJAG_01722":null,"SJAG_01772":null,"SJAG_01925":null,"SJAG_01973":null,"SJAG_02004":null,"SJAG_02012":null,"SJAG_02152":null,"SJAG_02166":null,"SJAG_02320":null,"SJAG_02344":null,"SJAG_02366":null,"SJAG_02368":null,"SJAG_02518":null,"SJAG_02572":null,"SJAG_02587":null,"SJAG_02602":null,"SJAG_02753":null,"SJAG_03005":null,"SJAG_03079":null,"SJAG_03246":null,"SJAG_03357":null,"SJAG_03363":null,"SJAG_03499":null,"SJAG_03536":null,"SJAG_03718":null,"SJAG_03754":null,"SJAG_03763":null,"SJAG_03808":null,"SJAG_03817":null,"SJAG_03864":null,"SJAG_03915":null,"SJAG_03938":null,"SJAG_03951":null,"SJAG_04044":null,"SJAG_04058":null,"SJAG_04167":null,"SJAG_04258":null,"SJAG_04343":null,"SJAG_04509":null,"SJAG_04517":null,"SJAG_04960":null,"SJAG_04966":null,"SJAG_07004":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"export from cell","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"efflux","type":"broad"}],"termid":"GO:0140352","terms_by_termid":{"GO:0006887":null,"GO:0006904":null,"GO:0017157":null,"GO:0036376":null,"GO:0045921":null,"GO:0090522":null,"GO:0090539":null,"GO:0097623":null,"GO:0120029":null,"GO:0140115":null,"GO:0140116":null,"GO:0140159":null,"GO:0180029":null,"GO:1990961":null}}


id: PBO:0080802
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exportin for tRNA","termid":"PBO:0080802"}


id: GO:1903896
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the IRE1-mediated unfolded protein response.","definition_xrefs":["GOC:PARL","PMID:22013210","GOC:bf","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of endoplasmic reticulum unfolded protein response","termid":"GO:1900103"},{"relation_name":"is_a","term_name":"regulation of IRE1-mediated unfolded protein response","termid":"GO:1903894"},{"relation_name":"positively_regulates","term_name":"IRE1-mediated unfolded protein response","termid":"GO:0036498"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of IRE1-mediated unfolded protein response","synonyms":[{"name":"activation of IRE1 branch of UPR","type":"narrow"},{"name":"activation of IRE1 signaling in response to endoplasmic reticulum stress","type":"related"},{"name":"activation of IRE1-mediated unfolded protein response","type":"narrow"},{"name":"activation of IRE1alpha unfolded protein response","type":"narrow"},{"name":"activation of IRE1p unfolded protein response","type":"narrow"},{"name":"activation of UPR signaling by IRE1 stress sensor","type":"narrow"},{"name":"activation of endoplasmic reticulum unfolded protein response; IRE1 signaling","type":"narrow"},{"name":"activation of inositol-requiring transmembrane kinase/endonuclease signal transduction","type":"related"},{"name":"positive regulation of ERN1-mediated unfolded protein response","type":"related"},{"name":"positive regulation of IRE1 branch of UPR","type":"exact"},{"name":"positive regulation of IRE1 signaling in response to endoplasmic reticulum stress","type":"related"},{"name":"positive regulation of IRE1alpha unfolded protein response","type":"narrow"},{"name":"positive regulation of IRE1p unfolded protein response","type":"narrow"},{"name":"positive regulation of UPR signaling by IRE1 stress sensor","type":"exact"},{"name":"positive regulation of endoplasmic reticulum unfolded protein response; IRE1 signaling","type":"exact"},{"name":"positive regulation of inositol-requiring transmembrane kinase/endonuclease signal transduction","type":"related"},{"name":"up regulation of IRE1 branch of UPR","type":"exact"},{"name":"up regulation of IRE1 signaling in response to endoplasmic reticulum stress","type":"related"},{"name":"up regulation of IRE1-mediated unfolded protein response","type":"exact"},{"name":"up regulation of IRE1alpha unfolded protein response","type":"narrow"},{"name":"up regulation of IRE1p unfolded protein response","type":"narrow"},{"name":"up regulation of UPR signaling by IRE1 stress sensor","type":"exact"},{"name":"up regulation of endoplasmic reticulum unfolded protein response; IRE1 signaling","type":"exact"},{"name":"up regulation of inositol-requiring transmembrane kinase/endonuclease signal transduction","type":"related"},{"name":"up-regulation of IRE1 branch of UPR","type":"exact"},{"name":"up-regulation of IRE1 signaling in response to endoplasmic reticulum stress","type":"related"},{"name":"up-regulation of IRE1-mediated unfolded protein response","type":"exact"},{"name":"up-regulation of IRE1alpha unfolded protein response","type":"narrow"},{"name":"up-regulation of IRE1p unfolded protein response","type":"narrow"},{"name":"up-regulation of UPR signaling by IRE1 stress sensor","type":"exact"},{"name":"up-regulation of endoplasmic reticulum unfolded protein response; IRE1 signaling","type":"exact"},{"name":"up-regulation of inositol-requiring transmembrane kinase/endonuclease signal transduction","type":"related"},{"name":"upregulation of IRE1 branch of UPR","type":"exact"},{"name":"upregulation of IRE1 signaling in response to endoplasmic reticulum stress","type":"related"},{"name":"upregulation of IRE1-mediated unfolded protein response","type":"exact"},{"name":"upregulation of IRE1alpha unfolded protein response","type":"narrow"},{"name":"upregulation of IRE1p unfolded protein response","type":"narrow"},{"name":"upregulation of UPR signaling by IRE1 stress sensor","type":"exact"},{"name":"upregulation of endoplasmic reticulum unfolded protein response; IRE1 signaling","type":"exact"},{"name":"upregulation of inositol-requiring transmembrane kinase/endonuclease signal transduction","type":"related"}],"termid":"GO:1903896"}


id: GO:0005992
data:
  {"annotated_genes":["SJAG_01427","SJAG_00182","SJAG_00129","SJAG_01531","SJAG_01209","SJAG_01862","SJAG_01646"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[61918,62635,64566,68295,68780,69459,109225],"is_not":false,"summary":null,"term":"GO:0005992"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of trehalose, a disaccharide that consists of two molecules of glucose and is isomeric with sucrose.","definition_xrefs":["GOC:jl","ISBN:0028623819"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trehalose metabolic process","termid":"GO:0005991"},{"relation_name":"is_a","term_name":"disaccharide biosynthetic process","termid":"GO:0046351"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00129":null,"SJAG_00182":null,"SJAG_01209":null,"SJAG_01427":null,"SJAG_01531":null,"SJAG_01646":null,"SJAG_01862":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"trehalose biosynthetic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null},"synonyms":[{"name":"mycose biosynthesis","type":"exact"},{"name":"mycose biosynthetic process","type":"exact"},{"name":"mykose biosynthesis","type":"exact"},{"name":"mykose biosynthetic process","type":"exact"},{"name":"trehalose anabolism","type":"exact"},{"name":"trehalose biosynthesis","type":"exact"},{"name":"trehalose formation","type":"exact"},{"name":"trehalose synthesis","type":"exact"}],"termid":"GO:0005992","terms_by_termid":{"GO:0005992":null}}


id: GO:0002721
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of B cell cytokine production.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of B cell mediated immunity","termid":"GO:0002712"},{"relation_name":"is_a","term_name":"regulation of cytokine production involved in immune response","termid":"GO:0002718"},{"relation_name":"regulates","term_name":"B cell cytokine production","termid":"GO:0002368"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"regulation of B cell cytokine production","synonyms":[{"name":"regulation of B lymphocyte cytokine production","type":"exact"},{"name":"regulation of B-cell cytokine production","type":"exact"},{"name":"regulation of B-lymphocyte cytokine production","type":"exact"}],"termid":"GO:0002721"}


id: PBO:0049371
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"general transcription factor IIIA pseudogene 1","termid":"PBO:0049371"}


id: MONDO:0021193
data:
  {"annotated_genes":["SJAG_04213","SJAG_01111"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87635,87634],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0024517"}]},"cv_name":"mondo","definition":"A neoplasm of the nervous system that arises from the neuroepithelial tissues. Representative examples include astrocytic tumors, oligodendroglial tumors, ependymal tumors, and primitive neuroectodermal tumors.","definition_xrefs":["NCIT:C3787"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system neoplasm","termid":"MONDO:0021248"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01111":null,"SJAG_04213":null},"genotype_count":0,"is_obsolete":false,"name":"neuroepithelial neoplasm","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:60215","ONCOTREE:PRNET","UMLS:C0206715","MESH:D018302"],"synonyms":[{"name":"neoplasm of neuroepithelial tissue","type":"exact"},{"name":"neoplasm of neuroepithelium","type":"exact"},{"name":"neoplasm of the neuroepithelium","type":"exact"},{"name":"neuroepithelial neoplasm","type":"exact"},{"name":"neuroepithelial neoplasms","type":"exact"},{"name":"neuroepithelial tissue neoplasm","type":"exact"},{"name":"neuroepithelial tissue tumor","type":"exact"},{"name":"neuroepithelial tissue tumour","type":"exact"},{"name":"neuroepithelial tumor","type":"exact"},{"name":"neuroepithelial tumors","type":"exact"},{"name":"neuroepithelial tumour","type":"exact"},{"name":"neuroepithelial tumours","type":"exact"},{"name":"primary neuroepithelial tumor","type":"related"},{"name":"primary neuroepithelial tumour","type":"related"},{"name":"tumor of neuroepithelial tissue","type":"exact"},{"name":"tumor of neuroepithelium","type":"exact"},{"name":"tumor of the neuroepithelium","type":"exact"},{"name":"tumour of neuroepithelial tissue","type":"exact"},{"name":"tumour of neuroepithelium","type":"exact"},{"name":"tumour of the neuroepithelium","type":"exact"}],"termid":"MONDO:0021193","terms_by_termid":{"MONDO:0024517":null},"xrefs":{"Monarch":{"xref_id":"0021193"}}}


id: GO:0004482
data:
  {"annotated_genes":["SJAG_04034"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[72507],"is_not":false,"summary":null,"term":"GO:0004482"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + G(5')pppR-RNA = S-adenosyl-L-homocysteine + m7G(5')pppR-RNA. m7G(5')pppR-RNA is mRNA containing an N7-methylguanine cap; R may be guanosine or adenosine.","definition_xrefs":["EC:2.1.1.56"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-methyltransferase activity","termid":"GO:0008170"},{"relation_name":"is_a","term_name":"mRNA methyltransferase activity","termid":"GO:0008174"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04034":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0003674","GO:0016741","GO:0003824","GO:0016740","GO:0140098"],"is_obsolete":false,"name":"mRNA 5'-cap (guanine-N7-)-methyltransferase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-9684017","Reactome:R-HSA-9684018","MetaCyc:MRNA-GUANINE-N7--METHYLTRANSFERASE-RXN","Reactome:R-HSA-77090","Reactome:R-HSA-9684016","Reactome:R-HSA-9694476","Reactome:R-HSA-9694492","Reactome:R-HSA-9830848","Reactome:R-HSA-9694737"],"synonyms":[{"name":"S-adenosyl-L-methionine:mRNA (guanine-7-N-)-methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:mRNA (guanine-N7-)-methyltransferase activity","type":"related"},{"name":"guanine-7-methyltransferase activity","type":"related"},{"name":"messenger RNA guanine 7-methyltransferase activity","type":"related"},{"name":"messenger ribonucleate guanine 7-methyltransferase activity","type":"related"}],"termid":"GO:0004482","terms_by_termid":{"GO:0004482":null}}


id: GO:0000092
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell cycle phase during which the polar microtubules elongate and the two poles of the spindle move farther apart as part of mitosis.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitotic anaphase","termid":"GO:0000090"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0000090"},{"rel_name":"part_of","termid":"GO:0000087"}],"interesting_parent_ids":["GO:0008150","GO:0000087","GO:0000090"],"is_obsolete":false,"name":"mitotic anaphase B","termid":"GO:0000092"}


id: PBO:0076679
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription elongation factor A1 pseudogene 4","termid":"PBO:0076679"}


id: PR:Q9HGM5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ATP-dependent RNA helicase DDX49 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04078","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase dbp8 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC543.06c","secondary_identifiers":["UniProtKB:Q9HGM5"],"synonyms":[{"name":"Spom972h-DDX49","type":"exact"}],"termid":"PR:Q9HGM5"}


id: PBO:0064069
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 103","termid":"PBO:0064069"}


id: PBO:0042786
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centrosomal protein 135","termid":"PBO:0042786"}


id: PBO:0034770
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDP-diacylglycerol-glycerol-3-phosphate3-phosphatidyltransferase Pgs1","termid":"PBO:0034770"}


id: MONDO:0030506
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"46 XX gonadal dysgenesis","termid":"MONDO:0009299"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"ovarian dysgenesis 9","secondary_identifiers":["MEDGEN:1794256","UMLS:C5562046","OMIM:619665"],"synonyms":[{"name":"ODG9","type":"exact"}],"termid":"MONDO:0030506","xrefs":{"Monarch":{"xref_id":"0030506"}}}


id: PBO:0091478
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SH3 Homology Domain","termid":"PBO:0091478"}


id: FYPO:0007147
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which Mei2 nuclear dot formation is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein-containing complex assembly","termid":"FYPO:0006839"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal Mei2 nuclear dot formation","synonyms":[{"name":"normal Mei2 nuclear dot assembly","type":"exact"},{"name":"normal meiRNA nuclear dot formation","type":"related"}],"termid":"FYPO:0007147"}


id: PBO:0069775
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1059, pseudogene","termid":"PBO:0069775"}


id: PBO:0018032
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synviolin family ubiquitin-protein ligase E3, Hrd1","termid":"PBO:0018032"}


id: GO:0008061
data:
  {"annotated_genes":["SJAG_00620","SJAG_03013"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[67340,92094],"is_not":false,"summary":null,"term":"GO:0008061"}]},"cv_name":"molecular_function","definition":"Binding to chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues.","definition_xrefs":["GOC:jl","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate derivative binding","termid":"GO:0097367"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00620":null,"SJAG_03013":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"chitin binding","references_by_uniquename":{"GO_REF:0000043":null,"GO_REF:0000107":null},"termid":"GO:0008061","terms_by_termid":{"GO:0008061":null}}


id: PBO:0064626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inorganic pyrophosphatase 2","termid":"PBO:0064626"}


id: PBO:0066567
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rhomboid 5 homolog 2","termid":"PBO:0066567"}


id: PBO:0067976
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 278","termid":"PBO:0067976"}


id: PBO:0088217
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CoA-dependent acyltransferase superfamily (predicted)","termid":"PBO:0088217"}


id: PBO:0109018
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ANKRD13C divergent transcript","termid":"PBO:0109018"}


id: PBO:0088961
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein phosphatase PP2A regulatory subunit, PTPA family Ypa1","termid":"PBO:0088961"}


id: PBO:0091417
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human ELOVL1","termid":"PBO:0091417"}


id: FYPO:0006799
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which nuclear MIS12/MIND complex binding by a gene product (usually a protein) in a mutant does not occur. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah","PMID:29180432"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein-protein interaction","termid":"FYPO:0000705"},{"relation_name":"is_a","term_name":"abnormal protein complex binding","termid":"FYPO:0003591"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000702"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000702","FYPO:0000707","FYPO:0000652"],"is_obsolete":false,"name":"abolished nuclear MIS12/MIND complex binding","synonyms":[{"name":"abolished nuclear MIS12/MIND complex binding during mitotic cell cycle","type":"related"},{"name":"abolished nuclear MIS12/MIND complex binding during vegetative growth","type":"exact"},{"name":"nuclear MIS12/MIND complex binding abolished","type":"exact"}],"termid":"FYPO:0006799"}


id: SO:0000301
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A feature where recombination has occurred for the purpose of generating a diversity in the immune system.","direct_ancestors":[{"relation_name":"is_a","term_name":"recombination_feature_of_rearranged_gene","termid":"SO:0000300"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vertebrate_immune_system_gene_recombination_feature","synonyms":[{"name":"vertebrate immune system gene recombination feature","type":"exact"}],"termid":"SO:0000301"}


id: PBO:0066629
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA sensor RIG-I","termid":"PBO:0066629"}


id: PBO:0083044
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Deoxycytidyl transferase; involved in repair of abasic sites and adducted guanines in damaged DNA by translesion synthesis (TLS); forms a complex with the subunits of DNA polymerase zeta, Rev3p and Rev7p; relocalizes from nucleus to cytoplasm upon DNA replication stress; may be involved in meiosis","termid":"PBO:0083044"}


id: PBO:0034794
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent helicase Slh1, human ASCC3 ortholog (predicted)","termid":"PBO:0034794"}


id: GO:0055105
data:
  {"annotated_genes":["SJAG_01515","SJAG_02485","SJAG_04699"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[114962],"is_not":false,"summary":null,"term":"GO:0055105"},{"annotations":[115890,99016],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990948"}]},"cv_name":"molecular_function","definition":"Binds to and stops, prevents or reduces the activity of a ubiquitin-protein transferase.","definition_xrefs":["GOC:rl","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme inhibitor activity","termid":"GO:0004857"},{"relation_name":"is_a","term_name":"ubiquitin-protein transferase regulator activity","termid":"GO:0055106"},{"relation_name":"negatively_regulates","term_name":"ubiquitin-protein transferase activity","termid":"GO:0004842"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01515":null,"SJAG_02485":null,"SJAG_04699":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016746"},{"rel_name":"negatively_regulates","termid":"GO:0016746"},{"rel_name":"regulates","termid":"GO:0003824"},{"rel_name":"regulates","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0004857"},{"rel_name":"regulates","termid":"GO:0019787"},{"rel_name":"negatively_regulates","termid":"GO:0019787"},{"rel_name":"is_a","termid":"GO:0140678"},{"rel_name":"negatively_regulates","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"negatively_regulates","termid":"GO:0140096"},{"rel_name":"regulates","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"negatively_regulates","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0030234"}],"interesting_parent_ids":["GO:0016746","GO:0140678","GO:0030234","GO:0098772","GO:0004857","GO:0019787","GO:0140096","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"ubiquitin-protein transferase inhibitor activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0055105","terms_by_termid":{"GO:0055105":null,"GO:1990948":null}}


id: MONDO:0000199
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete familial adenomatous polyposis (obsolete MONDO:0000199)","termid":"MONDO:0000199","xrefs":{"Monarch":{"xref_id":"0000199"}}}


id: PBO:0085278
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Peroxisomal matrix protein; well-conserved in fungi; contains tripartite homology domain of thiamine pyrophosphate (TPP) enzymes; targeted to peroxisomes by Pex5p; contains low sequence identity with Pdc1p; mRNA identified as translated by ribosome profiling data","termid":"PBO:0085278"}


id: PBO:0070811
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L12 pseudogene 41","termid":"PBO:0070811"}


id: PBO:0058651
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6780a","termid":"PBO:0058651"}


id: GO:0038185
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A nuclear receptor-mediated signaling pathway initiated by a bile acid binding to an intracellular receptor of the nuclear receptor protein family, and ending with regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["PMID:10334992","PMID:36409000"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bile acid signaling pathway","termid":"GO:0038183"},{"relation_name":"is_a","term_name":"nuclear receptor-mediated signaling pathway","termid":"GO:0141193"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"nuclear receptor-mediated bile acid signaling pathway","synonyms":[{"name":"BAR signaling pathway","type":"related"},{"name":"FXR signaling pathway","type":"exact"},{"name":"farnesoid X receptor signaling pathway","type":"exact"},{"name":"intracellular bile acid receptor signaling pathway","type":"exact"},{"name":"nuclear bile acid receptor signaling pathway","type":"related"}],"termid":"GO:0038185"}


id: PBO:0079351
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TUB bipartite transcription factor","termid":"PBO:0079351"}


id: FYPO:0007864
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to one or both poles of the meiotic spindle does not occur during the first meiotic nuclear division.","definition_xrefs":["PMID:34346498","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization","termid":"FYPO:0001375"},{"relation_name":"is_a","term_name":"abnormal protein localization to meiotic spindle","termid":"FYPO:0006454"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abolished protein localization to meiotic spindle pole during meiosis I","synonyms":[{"name":"abolished protein localisation to meiotic spindle pole during meiosis I","type":"exact"},{"name":"abolished protein localisation to spindle pole during meiosis I","type":"exact"},{"name":"abolished protein localization to meiosis I spindle pole","type":"exact"},{"name":"abolished protein localization to spindle pole during first meiotic nuclear division","type":"exact"},{"name":"protein localization to meiotic spindle pole during meiosis I abolished","type":"exact"}],"termid":"FYPO:0007864"}


id: MONDO:0007741
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital hydronephrosis is a renal urinary disease characterized by distension and dilation of the renal pelvis and calyces secondary to various congenital obstructive malformations of the kidneys and urinary tract that can evolve to renal atrophy.","definition_xrefs":["Orphanet:2190"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydronephrosis","termid":"MONDO:0005510"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"congenital hydronephrosis","secondary_identifiers":["MEDGEN:78594","ICD9:753.29","MedDRA:10050975","NCIT:C102979","ICD10CM:Q62.0","SCTID:16297002","NANDO:2200176","icd11.foundation:808343797","UMLS:C0266316"],"termid":"MONDO:0007741","xrefs":{"Monarch":{"xref_id":"0007741"}}}


id: PBO:0049295
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GSTCD antisense RNA 1","termid":"PBO:0049295"}


id: PBO:0029018
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_polyuridylation-dependent_decapping_of_nuclear-transcribed_mRNA","termid":"PBO:0029018"}


id: FYPO:0001629
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-methionine measured in the vacuole is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal level of substance in vacuole","termid":"FYPO:0001603"},{"relation_name":"is_a","term_name":"normal cellular methionine level","termid":"FYPO:0001639"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000257","FYPO:0001312"],"is_obsolete":false,"name":"normal vacuolar methionine level","synonyms":[{"name":"normal level of methionine in vacuole","type":"exact"},{"name":"normal vacuolar L-methionine level","type":"exact"},{"name":"normal vacuolar methionine level during mitotic cell cycle","type":"related"},{"name":"normal vacuolar methionine level during vegetative growth","type":"exact"}],"termid":"FYPO:0001629"}


id: MONDO:0008219
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pemphigus is a group of chronic autoimmune skin diseases characterized by blister formations on the outer layer of the skin and the mucous membranes. Three clinical forms have been characterized, of which pemphigus vulgaris is the most frequent (75%).","definition_xrefs":["Orphanet:704"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pemphigus","termid":"MONDO:0006594"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005093"],"is_obsolete":false,"name":"pemphigus vulgaris","secondary_identifiers":["MEDGEN:10621","UMLS:C0030809","MESH:C536645","SCTID:49420001","ICD10CM:L10.0","OMIM:169610","GARD:7355","EFO:0004719","MedDRA:10052802","icd11.foundation:278358681","DOID:0060851","NANDO:1200229","NCIT:C34910"],"synonyms":[{"name":"familial pemphigus vulgaris","type":"exact"},{"name":"pemphigus vulgaris, familial","type":"related"}],"termid":"MONDO:0008219","xrefs":{"Monarch":{"xref_id":"0008219"}}}


id: GO:0001815
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of antibody-dependent cellular cytotoxicity.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of type IIa hypersensitivity","termid":"GO:0001798"},{"relation_name":"is_a","term_name":"regulation of antibody-dependent cellular cytotoxicity","termid":"GO:0001813"},{"relation_name":"is_a","term_name":"positive regulation of leukocyte mediated cytotoxicity","termid":"GO:0001912"},{"relation_name":"positively_regulates","term_name":"antibody-dependent cellular cytotoxicity","termid":"GO:0001788"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of antibody-dependent cellular cytotoxicity","synonyms":[{"name":"activation of antibody-dependent cellular cytotoxicity","type":"narrow"},{"name":"positive regulation of antibody dependent cell death","type":"exact"},{"name":"positive regulation of antibody dependent cell killing","type":"exact"},{"name":"positive regulation of antibody-dependent cell death","type":"exact"},{"name":"positive regulation of antibody-dependent cell killing","type":"exact"},{"name":"stimulation of antibody-dependent cellular cytotoxicity","type":"narrow"},{"name":"up regulation of antibody-dependent cellular cytotoxicity","type":"exact"},{"name":"up-regulation of antibody-dependent cellular cytotoxicity","type":"exact"},{"name":"upregulation of antibody-dependent cellular cytotoxicity","type":"exact"}],"termid":"GO:0001815"}


id: PBO:0054597
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2000","termid":"PBO:0054597"}


id: GO:0032158
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A diffuse ring composed of a series of septin bars that run parallel to the long axis of the cell. This type of septin structure has been observed in a number of locations associated with polarized grown and/or deposition of new membrane, but not with cytokinesis, such as at the shmoo (mating projection) neck, at the junction between the mother cell and the germ tube (hypha) of a fungal cell growing filamentously.","definition_xrefs":["GOC:krc","PMID:16151244"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"septin cytoskeleton","termid":"GO:0032156"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"septin band","termid":"GO:0032158"}


id: PBO:0068474
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 52, pseudogene","termid":"PBO:0068474"}


id: PR:O59804
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 10 kDa chaperonin that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04591","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"10 kDa heat shock protein, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC550.06c","secondary_identifiers":["UniProtKB:O59804"],"synonyms":[{"name":"10 kDa chaperonin (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"HSP10 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-groS","type":"exact"}],"termid":"PR:O59804"}


id: PR:O94646
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- med8 gene.","definition_xrefs":["UniProtKB:O94646","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator of RNA polymerase II transcription subunit 8 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC21.04","synonyms":[{"name":"Spom972h-med8","type":"exact"},{"name":"cell separation protein sep15 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"mediator complex subunit 8 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94646"}


id: MONDO:0009336
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"pulmonary hemosiderosis","termid":"MONDO:0008346"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"hemosiderosis, pulmonary, with deficiency of gamma-a globulin","secondary_identifiers":["GARD:15180","OMIM:235500"],"synonyms":[{"name":"hemosiderosis, pulmonary, with deficiency of gamma-a globulin","type":"exact"}],"termid":"MONDO:0009336","xrefs":{"Monarch":{"xref_id":"0009336"}}}


id: PBO:0076606
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBC1 domain family member 25","termid":"PBO:0076606"}


id: PBO:0063784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PHD finger protein 10","termid":"PBO:0063784"}


id: SO:0001280
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"2'-O-methylinosine is a modified inosine.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_inosine","termid":"SO:0001274"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"two_prime_O_methylinosine","secondary_identifiers":["RNAMOD:081"],"synonyms":[{"name":"2'-O-methylinosine","type":"exact"},{"name":"Im","type":"exact"},{"name":"two prime O methylinosine","type":"exact"}],"termid":"SO:0001280"}


id: MONDO:0011116
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Lung agenesis - heart defect - thumb anomalies is a very rare syndrome characterized by unilateral complete or partial lung agenesis, congenital cardiac defects and ipsilateral thumb anomalies.","definition_xrefs":["Orphanet:1120"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete non-syndromic respiratory or mediastinal malformation (obsolete MONDO:0015221)","termid":"MONDO:0015221"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"respiratory system disorder","termid":"MONDO:0005087"},{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lung agenesis-heart defect-thumb anomalies syndrome","secondary_identifiers":["SCTID:721976003","UMLS:C3275954","MEDGEN:477585","MESH:C535708","GARD:3378","OMIM:601612"],"synonyms":[{"name":"LACHT","type":"related"},{"name":"Manouvrier syndrome","type":"related"},{"name":"Mardini-Nyhan association","type":"related"},{"name":"Mardini-Nyhan syndrome","type":"exact"},{"name":"lung agenesis heart defect thumb anomalies","type":"related"},{"name":"lung agenesis, congenital heart defects, and thumb anomalies syndrome","type":"related"},{"name":"pulmonary aplasia and triphalangia of the thumb","type":"related"}],"termid":"MONDO:0011116","xrefs":{"Monarch":{"xref_id":"0011116"}}}


id: MOD:01144
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to S-(sn-1-2,3-dipalmitoyl-glycerol)cysteine.","definition_xrefs":["RESID:AA0107#var","DeltaMass:0","PubMed:9056182","PubMed:4575979","PubMed:10896212"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-diacylglycerol-L-cysteine","termid":"MOD:00116"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:01155"},{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:01155","MOD:00905"],"is_obsolete":false,"name":"S-(sn-1-2,3-dipalmitoylglycerol)-L-cysteine","synonyms":[{"name":"S-(sn-1-Dipalmitoyl-glyceryl)- (on Cysteine)","type":"exact"}],"termid":"MOD:01144"}


id: PR:O36016
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ypa1 gene.","definition_xrefs":["UniProtKB:O36016","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein phosphatase 2A activator 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4F10.04","synonyms":[{"name":"PPIase PTPA-1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-ypa1","type":"exact"},{"name":"peptidyl-prolyl cis-trans isomerase PTPA-1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"phosphotyrosyl phosphatase activator 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"rotamase PTPA-1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O36016"}


id: SO:0001576
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant that changes the structure of the transcript.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gene_variant","termid":"SO:0001564"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcript_variant","secondary_identifiers":["http://snpeff.sourceforge.net/SnpEff_manual.html"],"synonyms":[{"name":"Jannovar:transcript_variant","type":"exact"},{"name":"VAAST:transcript_variant","type":"exact"},{"name":"snpEff:TRANSCRIPT","type":"exact"},{"name":"transcript variant","type":"exact"}],"termid":"SO:0001576"}


id: PBO:0034738
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iron-sensor Fra2","termid":"PBO:0034738"}


id: FYPO:0002382
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone H4 acetylation occurs to a greater extent than normal in centromere outer repeat regions.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H4 acetylation during vegetative growth","termid":"FYPO:0002365"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0002494","FYPO:0002274","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"increased histone H4 acetylation at centromere outer repeat during vegetative growth","synonyms":[{"name":"abnormal histone H4 acetylation at centromere otr during vegetative growth","type":"exact"},{"name":"abnormal histone H4 acetylation at centromeric outer repeat region during vegetative growth","type":"exact"},{"name":"abnormal histone H4 acetylation at pericentric region during vegetative growth","type":"related"},{"name":"abnormal histone H4 acetylation at pericentromeric region during vegetative growth","type":"related"},{"name":"increased histone H4 acetylation at centromere outer repeat during mitotic cell cycle","type":"related"}],"termid":"FYPO:0002382"}


id: GO:0036342
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a post-anal tail is generated and organized. A post-anal tail is a muscular region of the body that extends posterior to the anus. The post-anal tail may aid locomotion and balance.","definition_xrefs":["GOC:bf","Wikipedia:Chordate","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"post-anal tail morphogenesis","termid":"GO:0036342"}


id: PBO:0056638
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MED14 opposite strand","termid":"PBO:0056638"}


id: MONDO:0010154
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Trigonocephaly-bifid nose-acral anomalies syndrome is characterized by trigonocephaly, brachycephaly, bulbous nose (bifid at the tip), micrognathia, macrostomia, hypotonia and relatively broad metatarsals and phalanges.","definition_xrefs":["Orphanet:3368"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome without intellectual disability","termid":"MONDO:0015161"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trigonocephaly-bifid nose-acral anomalies syndrome","secondary_identifiers":["OMIM:275595","UMLS:C1848743","GARD:5126","MEDGEN:341296","MESH:C564759"],"synonyms":[{"name":"trigonobrachycephaly, bulbous bifid nose, macrostomia, micrognathia, acral anomalies, and hypotonia","type":"related"},{"name":"trigonobrachycephaly, bulbous bifid nose, micrognathia, and abnormalities of the hands and feet","type":"related"},{"name":"trigonocephaly - bifid nose - acral anomalies","type":"related"}],"termid":"MONDO:0010154","xrefs":{"Monarch":{"xref_id":"0010154"}}}


id: MONDO:0007508
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A form of ectodermal dysplasia characterized by the association of anhidrotic ectodermal dysplasia with cleft lip/palate.","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"cleft lip","termid":"MONDO:0004747"},{"relation_name":"is_a","term_name":"cleft palate","termid":"MONDO:0016064"},{"relation_name":"is_a","term_name":"ectodermal dysplasia syndrome","termid":"MONDO:0019287"},{"relation_name":"is_a","term_name":"TP63-related ectodermal dysplasia spectrum with limb and orofacial malformations","termid":"MONDO:1040001"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0005093"],"is_obsolete":false,"name":"Rapp-Hodgkin syndrome","secondary_identifiers":["icd11.foundation:1455333054","OMIM:129400","Orphanet:3022","MESH:C535289","SCTID:7731005","MEDGEN:315656","DOID:0060330","GARD:5690","UMLS:C1785148"],"synonyms":[{"name":"OFC8, included","type":"related"},{"name":"RHS","type":"related"},{"name":"Rapp-Hodgkin ectodermal dysplasia syndrome","type":"related"},{"name":"Rapp-Hodgkin syndrome","type":"exact"},{"name":"anhidrotic ectodermal dysplasia with cleft lip/palate","type":"exact"},{"name":"cleft lip with or without cleft palate, nonsyndromic, 8","type":"related"},{"name":"ectodermal dysplasia, anhidrotic, with cleft Lip/palate","type":"related"},{"name":"ectodermal dysplasia, anhidrotic, with cleft lip-palate","type":"related"},{"name":"orofacial cleft 8","type":"related"}],"termid":"MONDO:0007508","xrefs":{"Monarch":{"xref_id":"0007508"}}}


id: PBO:0047422
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box and WD repeat domain containing 11 pseudogene 1","termid":"PBO:0047422"}


id: GO:1990493
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A protein complex consisting of cyclin H and cyclin-dependent kinase 7 (CDK7). Cyclins are characterized by periodicity in protein abundance throughout the cell cycle. Cyclin-dependent kinases represent a family of serine/threonine protein kinases that become active upon binding to a cyclin regulatory partner.","definition_xrefs":["PMID:9857180"],"gene_count":0,"genotype_count":0,"name":"obsolete cyclin H-CDK7 complex (obsolete GO:1990493)","synonyms":[{"name":"cyclin H-CDK7 complex","type":"exact"}],"termid":"GO:1990493"}


id: PBO:0079280
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin tyrosine ligase","termid":"PBO:0079280"}


id: GO:0031429
data:
  {"annotated_genes":["SJAG_00566","SJAG_01234","SJAG_00083","SJAG_04754"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[59265,74838,78105,80438],"is_not":false,"summary":null,"term":"GO:0031429"}]},"cv_name":"cellular_component","definition":"A box H/ACA small nucleolar ribonucleoprotein complex located in the nucleolus that catalyzes pseudouridylation of ribosomal RNA residues. The complex is composed of four different core proteins that assemble onto a H/ACA guide RNA scaffold that identifies specific uridines in rRNA for modification during ribosome synthesis.","definition_xrefs":["PMID:20227365","PMID:22065625","PMID:17284456","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"box H/ACA RNP complex","termid":"GO:0072588"},{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"},{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"},{"relation_name":"part_of","term_name":"nucleolus","termid":"GO:0005730"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00083":null,"SJAG_00566":null,"SJAG_01234":null,"SJAG_04754":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005730"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005730","GO:0032991","GO:0005634","GO:0005575"],"is_obsolete":false,"name":"box H/ACA snoRNP complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000104":null},"synonyms":[{"name":"box H/ACA small nucleolar ribonucleoprotein complex","type":"exact"},{"name":"box H/ACA snoRNP pseudouridylase complex","type":"exact"}],"termid":"GO:0031429","terms_by_termid":{"GO:0031429":null}}


id: PBO:0056950
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 16-2","termid":"PBO:0056950"}


id: PBO:0000317
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptional corepressor Tup12","termid":"PBO:0000317"}


id: PBO:0027834
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cell_septum_edging_catabolic_process","termid":"PBO:0027834"}


id: PBO:0031138
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-split_actomyosin_contractile_ring","termid":"PBO:0031138"}


id: PBO:0086161
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein required for recombination and meiotic nuclear division; forms a complex with Hop2p, which is involved in chromosome pairing and repair of meiotic double-strand breaks","termid":"PBO:0086161"}


id: GO:0035244
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of a methyl group to the carbon atom of an arginine residue in a protein. This modification has been detected in anaerobic bacteria.","definition_xrefs":["PMID:29743535","PMID:33162960","GOC:bf","RHEA:66028"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C-methyltransferase activity","termid":"GO:0008169"},{"relation_name":"is_a","term_name":"protein methyltransferase activity","termid":"GO:0008276"},{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0008276"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016741","GO:0003824","GO:0016740","GO:0140096","GO:0003674","GO:0008276"],"is_obsolete":false,"name":"protein-arginine C-methyltransferase activity","secondary_identifiers":["EC:2.1.1.379"],"synonyms":[{"name":"peptidyl arginine C-methyltransferase activity","type":"exact"},{"name":"peptidyl-arginine C-methylase activity","type":"exact"},{"name":"peptidyl-arginine C-methyltransferase activity","type":"exact"},{"name":"protein-arginine C-methylase activity","type":"exact"}],"termid":"GO:0035244"}


id: PBO:0091056
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger C3HC-type containing RNA export factor Rsm1","termid":"PBO:0091056"}


id: GO:0075024
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of symbiont phospholipase C-mediated signal transduction during appressorium formation on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete phospholipase C-mediated activation of appressorium formation (obsolete GO:0075024)","termid":"GO:0075024"}


id: MOD:01463
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces an L-methionine alpha amino hydrogen with a methyl group.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methylated methionine","termid":"MOD:00716"},{"relation_name":"is_a","term_name":"alpha-amino methylated residue","termid":"MOD:01460"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"N-methylated methionine","termid":"MOD:01463"}


id: MOD:00669
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue hydroxyl group with a octanoyloxy group.","definition_xrefs":["Unimod:426"],"direct_ancestors":[{"relation_name":"is_a","term_name":"octanoylated residue","termid":"MOD:00666"},{"relation_name":"is_a","term_name":"O-acylated residue","termid":"MOD:00671"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:01155"}],"interesting_parent_ids":["MOD:01155"],"is_obsolete":false,"name":"O-octanoylated residue","synonyms":[{"name":"OOctRes","type":"exact"},{"name":"Octanoyl","type":"related"},{"name":"octanoyl","type":"related"}],"termid":"MOD:00669"}


id: MONDO:0010880
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any hereditary hemorrhagic telangiectasia in which the cause of the disease is a mutation in the ACVRL1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary hemorrhagic telangiectasia","termid":"MONDO:0019180"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"telangiectasia, hereditary hemorrhagic, type 2","secondary_identifiers":["GARD:9901","MEDGEN:324960","OMIM:600376","UMLS:C1838163"],"synonyms":[{"name":"ACVRL1 hereditary hemorrhagic telangiectasia","type":"exact"},{"name":"HHT2","type":"related"},{"name":"ORW2","type":"related"},{"name":"Osler Weber Rendu syndrome type 2","type":"related"},{"name":"hereditary hemorrhagic telangiectasia caused by mutation in ACVRL1","type":"exact"},{"name":"hereditary hemorrhagic telangiectasia type 2","type":"related"},{"name":"pulmonary arterial hypertension, hereditary hemorrhagic telangiectasia-related","type":"related"},{"name":"telangiectasia hereditary hemorrhagic type 2","type":"related"},{"name":"telangiectasia, hereditary hemorrhagic, type 2","type":"exact"}],"termid":"MONDO:0010880","xrefs":{"Monarch":{"xref_id":"0010880"}}}


id: PBO:0068489
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 73, pseudogene","termid":"PBO:0068489"}


id: GO:2000992
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of galactomannan catabolic process.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of catabolic process","termid":"GO:0009895"},{"relation_name":"is_a","term_name":"negative regulation of macromolecule metabolic process","termid":"GO:0010605"},{"relation_name":"is_a","term_name":"negative regulation of carbohydrate metabolic process","termid":"GO:0045912"},{"relation_name":"is_a","term_name":"regulation of galactomannan catabolic process","termid":"GO:2000991"},{"relation_name":"negatively_regulates","term_name":"galactomannan catabolic process","termid":"GO:0051682"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"negative regulation of galactomannan catabolic process","termid":"GO:2000992"}


id: PBO:0072930
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small Cajal body-specific RNA 10","termid":"PBO:0072930"}


id: GO:0003816
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the cleavage of component C4 to C4a and C4b (Arg-Ala bond), and component C2 to C2a and C2b (Lys-Lys or Arg-Lys bond).","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete complement component C1s activity (obsolete GO:0003816)","synonyms":[{"name":"C1 esterase activity","type":"related"},{"name":"C1s esterase activity","type":"related"},{"name":"activated complement C1s","type":"related"},{"name":"complement C1s","type":"related"},{"name":"complement component C1s activity","type":"exact"},{"name":"complement subcomponent C1s","type":"related"}],"termid":"GO:0003816"}


id: SO:0001102
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A binding site that, in the polypeptide molecule, interacts selectively and non-covalently with tungsten ions.","definition_xrefs":["EBIBS:GAR","SO:cb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polypeptide_metal_contact","termid":"SO:0001092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"polypeptide_tungsten_ion_contact_site","secondary_identifiers":["BS:00143"],"synonyms":[{"name":"W_contact_site","type":"exact"},{"name":"polypeptide tungsten ion contact site","type":"exact"}],"termid":"SO:0001102"}


id: PBO:0063506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyruvate dehydrogenase phosphatase regulatory subunit 2, pseudogene","termid":"PBO:0063506"}


id: PBO:0063467
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyruvate dehydrogenase E1 subunit alpha 1","termid":"PBO:0063467"}


id: MONDO:0015220
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete syndrome with a central nervous system malformation as major feature (obsolete MONDO:0015220)","secondary_identifiers":["Orphanet:108991"],"termid":"MONDO:0015220","xrefs":{"Monarch":{"xref_id":"0015220"}}}


id: PBO:0055215
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2641","termid":"PBO:0055215"}


id: FYPO:0002040
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of deadenylation-independent decapping of nuclear-transcribed mRNA is increased. All RNA decapping may be increased, or one or more specific RNA molecules may be selectively affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal deadenylation-independent decapping of nuclear-transcribed mRNA","termid":"FYPO:0002038"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0000294","FYPO:0005447"],"is_obsolete":false,"name":"increased deadenylation-independent decapping of nuclear-transcribed mRNA","synonyms":[{"name":"increased deadenylation-independent decapping of nuclear-transcribed mRNA during mitotic cell cycle","type":"related"},{"name":"increased deadenylation-independent decapping of nuclear-transcribed mRNA during vegetative growth","type":"exact"}],"termid":"FYPO:0002040"}


id: GO:0003828
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: CMP-N-acetylneuraminate + alpha-N-acetylneuraminyl-(2->3)-beta-D-galactosyl-R = CMP + alpha-N-acetylneuraminyl-(2->8)-alpha-N-acetylneuraminyl-(2->3)-beta-D-galactosyl-R.","definition_xrefs":["EC:2.4.3.8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sialyltransferase activity","termid":"GO:0008373"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0016757"],"is_obsolete":false,"name":"alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity","secondary_identifiers":["Reactome:R-HSA-422454","RHEA:19313","Reactome:R-HSA-9845587","Reactome:R-HSA-4084978","Reactome:R-HSA-1022133","MetaCyc:2.4.99.8-RXN"],"synonyms":[{"name":"alpha-2,8-sialyltransferase activity","type":"related"},{"name":"alpha-N-acetylneuraminide alpha-2,8-sialyltransferase activity","type":"exact"},{"name":"cytidine monophosphoacetylneuraminate-ganglioside GM3","type":"related"},{"name":"ganglioside GD3 synthase activity","type":"related"},{"name":"ganglioside GD3 synthetase sialyltransferase activity","type":"related"}],"termid":"GO:0003828"}


id: PBO:0002897
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"promoter contains UAS","termid":"PBO:0002897"}


id: PBO:0027799
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_triplatin_tetranitrate","termid":"PBO:0027799"}


id: MONDO:0026184
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete genetic visceral malformation of the liver, biliary tract, pancreas or spleen (obsolete MONDO:0026184)","secondary_identifiers":["Orphanet:183548"],"termid":"MONDO:0026184","xrefs":{"Monarch":{"xref_id":"0026184"}}}


id: GO:0032417
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the activity of a sodium:hydrogen antiporter, which catalyzes the reaction: Na+(out) + H+(in) = Na+(in) + H+(out).","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of sodium ion transmembrane transporter activity","termid":"GO:2000651"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"positive regulation of sodium:proton antiporter activity","synonyms":[{"name":"activation of sodium:hydrogen antiporter activity","type":"narrow"},{"name":"positive regulation of sodium:hydrogen antiporter activity","type":"exact"},{"name":"stimulation of sodium:hydrogen antiporter activity","type":"narrow"},{"name":"up regulation of sodium:hydrogen antiporter activity","type":"exact"},{"name":"up-regulation of sodium:hydrogen antiporter activity","type":"exact"},{"name":"upregulation of sodium:hydrogen antiporter activity","type":"exact"}],"termid":"GO:0032417"}


id: FYPO:0006538
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a cell is shaped in the form of a spheroid during a cellular response to a pheromone. In spheroid cells, there is much less difference between the long and short axes of the cell than in wild type. Spheroid cells may shorter than normal, with approximately the same diameter as normal, or they may be enlarged.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spheroid cell","termid":"FYPO:0001955"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000005","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"spheroid cell during cellular response to pheromone","synonyms":[{"name":"cell morphology, round cells during cellular response to pheromone","type":"related"},{"name":"cell morphology, rounded cells during cellular response to pheromone","type":"related"},{"name":"rounded cell during cellular response to pheromone","type":"exact"}],"termid":"FYPO:0006538"}


id: PBO:0077843
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TPD52 like 2","termid":"PBO:0077843"}


id: FYPO:0007986
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed during mitotic interphase in which the localization of a protein to the microtubule overlap of cytoplasmic microtubule bundles is decreased.","definition_xrefs":["PomBase:mlr","PMID:19879140"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to interphase microtubule","termid":"FYPO:0006182"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0000138","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"decreased protein localization to interphase microtubule bundle overlap","termid":"FYPO:0007986"}


id: MONDO:0032892
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"structural brain anomalies with impaired intellectual development and craniosynostosis","secondary_identifiers":["OMIM:618736","MEDGEN:1684861","UMLS:C5231485"],"synonyms":[{"name":"BAIDCS","type":"related"},{"name":"STRUCTURAL BRAIN ANOMALIES WITH IMPAIRED INTELLECTUAL DEVELOPMENT AND CRANIOSYNOSTOSIS","type":"related"}],"termid":"MONDO:0032892","xrefs":{"Monarch":{"xref_id":"0032892"}}}


id: GO:0102217
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: n ATP + n H2O + a 6-phosphogluco-maltodextrin = n AMP + n hydrogenphosphate + a poly-6-phosphogluco-maltodextrin.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 6-phosphoglucan, water dikinase activity (obsolete GO:0102217)","termid":"GO:0102217"}


id: MONDO:1010862
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Lysosomal storage disease that occurs in cattle.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lysosomal storage disease, non-human animal","termid":"MONDO:1010171"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysosomal storage disease, cattle","secondary_identifiers":["OMIA:000616-9913"],"termid":"MONDO:1010862","xrefs":{"Monarch":{"xref_id":"1010862"}}}


id: PBO:0028195
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_azetidine-2-carboxylic_acid_acetyltransferase_activity","termid":"PBO:0028195"}


id: PBO:0042686
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CEBPZ opposite strand","termid":"PBO:0042686"}


id: MONDO:0018133
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Attenuated Chédiak-Higashi syndrome (CHS) is a very rare and atypical form of CHS, a genetic disorder characterized by partial oculocutaneous albinism (OCA), severe immunodeficiency, mild bleeding, neurological dysfunction and lymphoproliferative disorder.","definition_xrefs":["Orphanet:352723"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary peripheral neuropathy","termid":"MONDO:0020127"},{"relation_name":"is_a","term_name":"inherited neurodegenerative disorder","termid":"MONDO:0024237"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0005244"],"is_obsolete":false,"name":"attenuated Chédiak-Higashi syndrome","secondary_identifiers":["ICD10CM:E70.3","SCTID:720520009","UMLS:C4304022","MEDGEN:929691","GARD:21527"],"synonyms":[{"name":"attenuated Chediak-Higashi syndrome","type":"exact"},{"name":"atypical Chediak-Higashi syndrome","type":"exact"},{"name":"atypical Chédiak-Higashi syndrome","type":"exact"}],"termid":"MONDO:0018133","xrefs":{"Monarch":{"xref_id":"0018133"}}}


id: PBO:0035794
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_nucleus_during_mitosis","termid":"PBO:0035794"}


id: GO:0047033
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: NADP+ + prostaglandin I(2) = 15-dehydro-prostaglandin I(2) + H+ + NADPH.","definition_xrefs":["RHEA:21420","EC:1.1.1.231"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"15-hydroxyprostaglandin-I dehydrogenase (NADP+) activity","secondary_identifiers":["KEGG_REACTION:R03520","MetaCyc:1.1.1.231-RXN"],"synonyms":[{"name":"(5Z,13E)-(15S)-6,9alpha-epoxy-11alpha,15-dihydroxyprosta-5,13-dienoate:NADP+ 15-oxidoreductase activity","type":"related"},{"name":"NADP+-dependent PGI2-specific 15-hydroxyprostaglandin dehydrogenase activity","type":"related"},{"name":"NADP-linked 15-hydroxyprostaglandin (prostacyclin) dehydrogenase activity","type":"related"},{"name":"PG I2 dehydrogenase activity","type":"related"},{"name":"prostacyclin dehydrogenase activity","type":"related"}],"termid":"GO:0047033"}


id: PBO:0072310
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S25 pseudogene 7","termid":"PBO:0072310"}


id: PBO:0091581
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMN complex subunit Yip11/Gem2","termid":"PBO:0091581"}


id: MONDO:0004501
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare, benign, asymptomatic neoplasm that arises from the fallopian tube. The tumors are round and solitary and contain connective tissue and cystic structures lined by serous-type epithelium. The majority of cases are incidental findings during operation for an unrelated gynecologic disorder.","definition_xrefs":["NCIT:C40114"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fallopian tube serous adenofibroma","termid":"MONDO:0003461"},{"relation_name":"is_a","term_name":"cystadenofibroma","termid":"MONDO:0003464"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fallopian tube cystadenofibroma","secondary_identifiers":["MEDGEN:273292","DOID:8211","UMLS:C1517111"],"synonyms":[{"name":"cystadenofibroma of fallopian tube","type":"exact"},{"name":"fallopian tube cystadenofibroma","type":"exact"},{"name":"fallopian tube serous cystadenofibroma","type":"exact"}],"termid":"MONDO:0004501","xrefs":{"Monarch":{"xref_id":"0004501"}}}


id: PBO:0041798
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"caspase recruitment domain family member 8","termid":"PBO:0041798"}


id: PBO:0081745
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 675","termid":"PBO:0081745"}


id: GO:0033007
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of mast cell activation as part of an immune response.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of immune effector process","termid":"GO:0002698"},{"relation_name":"is_a","term_name":"negative regulation of mast cell activation","termid":"GO:0033004"},{"relation_name":"is_a","term_name":"regulation of mast cell activation involved in immune response","termid":"GO:0033006"},{"relation_name":"is_a","term_name":"negative regulation of immune response","termid":"GO:0050777"},{"relation_name":"negatively_regulates","term_name":"mast cell activation involved in immune response","termid":"GO:0002279"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of mast cell activation involved in immune response","synonyms":[{"name":"negative regulation of mast cell activation during immune response","type":"related"}],"termid":"GO:0033007"}


id: PBO:0116999
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HMGA2 antisense RNA 2","termid":"PBO:0116999"}


id: PBO:0054251
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1634","termid":"PBO:0054251"}


id: PBO:0076540
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TLR adaptor interacting with endolysosomal SLC15A4","termid":"PBO:0076540"}


id: PBO:0066703
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA component of 7SK nuclear ribonucleoprotein","termid":"PBO:0066703"}


id: SO:1000017
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Change of a pyrimidine nucleotide, C or T, into a purine nucleotide, A or G, or vice versa.","definition_xrefs":["EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html"],"direct_ancestors":[{"relation_name":"is_a","term_name":"SNV","termid":"SO:0001483"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transversion","secondary_identifiers":["http://en.wikipedia.org/wiki/Transversion"],"termid":"SO:1000017"}


id: PBO:0060808
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase core subunit V2","termid":"PBO:0060808"}


id: GO:0060084
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of communication from a neuron to a smooth muscle in the bladder that contributes to the expulsion of urine from the body.","definition_xrefs":["GOC:dph","PMID:15827347"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuromuscular synaptic transmission","termid":"GO:0007274"},{"relation_name":"part_of","term_name":"micturition","termid":"GO:0060073"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"synaptic transmission involved in micturition","synonyms":[{"name":"synaptic transmission involved in urination","type":"related"}],"termid":"GO:0060084"}


id: GO:0071022
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A spliceosomal complex that is formed following the second splicing event and contains the spliced product, the excised intron, and three snRNPs, U5, U12 and U6atac.","definition_xrefs":["ISBN:0879697393","ISBN:0879695897","GOC:krc","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"U12-type spliceosomal complex","termid":"GO:0005689"},{"relation_name":"is_a","term_name":"post-spliceosomal complex","termid":"GO:0071020"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005634"],"is_obsolete":false,"name":"U12-type post-spliceosomal complex","synonyms":[{"name":"AT-AC post-spliceosomal complex","type":"narrow"},{"name":"mammalian U12-type spliceosomal complex C2","type":"narrow"},{"name":"minor post-spliceosomal complex","type":"exact"},{"name":"yeast U12-type spliceosomal complex A2-3","type":"narrow"}],"termid":"GO:0071022"}


id: GO:0055034
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the Bolwig's organ over time, from its formation to the mature structure. The larval eye in Drosophila is a relatively simple sensory system composed of Bolwig's organs: two clusters, each composed of 12 photoreceptor cells from which axons extend in a single fascicle to the brain.","definition_xrefs":["GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"eye development","termid":"GO:0001654"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Bolwig's organ development","termid":"GO:0055034"}


id: GO:0052687
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (3R)-3-isopropenyl-6-oxoheptanoate + CoA-SH + ATP = H2O + ADP + phosphate + (3R)-3-isopropenyl-6-oxoheptanoyl-CoA.","definition_xrefs":["KEGG_REACTION:R06396"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CoA-ligase activity","termid":"GO:0016405"},{"relation_name":"is_a","term_name":"acid-thiol ligase activity","termid":"GO:0016878"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016874","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"(3R)-3-isopropenyl-6-oxoheptanoate:CoA ligase (ADP-forming) activity","synonyms":[{"name":"3-isopropenyl-6-oxoheptanoyl-CoA synthetase activity","type":"broad"}],"termid":"GO:0052687"}


id: MONDO:0975808
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital myopathy","termid":"MONDO:0019952"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005336"],"is_obsolete":false,"name":"congenital myopathy 25","secondary_identifiers":["OMIM:620964"],"termid":"MONDO:0975808","xrefs":{"Monarch":{"xref_id":"0975808"}}}


id: GO:1903551
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of extracellular vesicular exosome assembly.","definition_xrefs":["GOC:TermGenie","PMID:24105262","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of organelle assembly","termid":"GO:1902115"},{"relation_name":"regulates","term_name":"extracellular exosome assembly","termid":"GO:0071971"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"regulation of extracellular exosome assembly","synonyms":[{"name":"regulation of extracellular vesicular exosome assembly","type":"exact"}],"termid":"GO:1903551"}


id: MONDO:0001390
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"refractive error","termid":"MONDO:0004892"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"transient refractive change","secondary_identifiers":["UMLS:C0155000","ICD9:367.81","icd11.foundation:416871389","MEDGEN:509757","DOID:11850","SCTID:81519008"],"termid":"MONDO:0001390","xrefs":{"Monarch":{"xref_id":"0001390"}}}


id: FYPO:0007932
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to a combination of hydroxyurea and methyl methanesulfonate. Cells stop growing (and may die) at concentrations of hydroxyurea and methyl methanesulfonate that allow wild type cells to grow.","direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002683"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0000139","FYPO:0005447","FYPO:0001985","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to hydroxyurea and methyl methanesulfonate","synonyms":[{"name":"sensitive to hydroxyurea and MMS","type":"exact"}],"termid":"FYPO:0007932"}


id: PBO:0073822
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 7 member 2","termid":"PBO:0073822"}


id: PBO:0079078
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-iMet (anticodon CAT) 1-6","termid":"PBO:0079078"}


id: PBO:0031767
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_antimycin_A","termid":"PBO:0031767"}


id: GO:0051264
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: mono-olein + mono-olein = diolein + glycerol. Mono-olein, also known as mono-oleoylglycerol, is the monoglyceride formed from oleic acid, 9-octodecenoic acid; diolein is also known as dioleoylglycerol.","definition_xrefs":["GOC:ai","PMID:15364929"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acylglycerol O-acyltransferase activity","termid":"GO:0016411"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0016740","GO:0016746","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"mono-olein transacylation activity","synonyms":[{"name":"MOG transacylation","type":"exact"},{"name":"acyl-CoA-independent mono-olein transacylation","type":"exact"},{"name":"mono-oleoylglycerol O-acyltransferase activity","type":"exact"},{"name":"mono-oleoylglycerol transacylase activity","type":"exact"},{"name":"monoolein transacylation","type":"exact"},{"name":"monooleoylglycerol O-acyltransferase activity","type":"exact"},{"name":"monooleoylglycerol transacylase activity","type":"exact"}],"termid":"GO:0051264"}


id: MONDO:0026724
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"},{"relation_name":"is_a","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Paganini-Miozzo syndrome","secondary_identifiers":["UMLS:C5193010","DOID:0111843","OMIM:301025","MEDGEN:1683361"],"synonyms":[{"name":"MRXSPM","type":"related"},{"name":"PAGANINI-MIOZZO SYNDROME","type":"related"},{"name":"Paganini-Miozzo syndrome, X-linked recessive","type":"exact"},{"name":"mental retardation, X-Linked, syndromic, Paganini-Miozzo type","type":"exact"}],"termid":"MONDO:0026724","xrefs":{"Monarch":{"xref_id":"0026724"}}}


id: MONDO:0008236
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phlebectasia of lips","secondary_identifiers":["MESH:C566806","MEDGEN:356962","UMLS:C1868391","OMIM:171450"],"synonyms":[{"name":"phlebectasia of lips","type":"exact"}],"termid":"MONDO:0008236","xrefs":{"Monarch":{"xref_id":"0008236"}}}


id: PBO:0042018
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 74B","termid":"PBO:0042018"}


id: PBO:0085263
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Permease of basic amino acids in the vacuolar membrane","termid":"PBO:0085263"}


id: PBO:0040295
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 3","termid":"PBO:0040295"}


id: PBO:0071980
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S6 pseudogene 9","termid":"PBO:0071980"}


id: GO:0050091
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-(2-hydroxyphenyl)propanoate + H+ + NADH + O2 = 3-(2,3-dihydroxyphenyl)propanoate + H2O + NAD+.","definition_xrefs":["RHEA:17669","EC:1.14.13.4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"melilotate 3-monooxygenase activity","secondary_identifiers":["MetaCyc:MELILOTATE-3-MONOOXYGENASE-RXN","KEGG_REACTION:R03369"],"synonyms":[{"name":"2-hydroxyphenylpropionate hydroxylase activity","type":"related"},{"name":"2-hydroxyphenylpropionic hydroxylase activity","type":"related"},{"name":"3-(2-hydroxyphenyl)propanoate,NADH:oxygen oxidoreductase (3-hydroxylating)","type":"related"},{"name":"melilotate hydroxylase activity","type":"exact"},{"name":"melilotic hydroxylase activity","type":"related"}],"termid":"GO:0050091"}


id: PBO:0087856
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcriptional activator for GABA-dependent induction of GABA genes; binds to DNA elements found in the promoters of target genes and increases their expression in the presence of GABA (gamma-aminobutyrate); zinc finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type; localized to the nucleus; examples of GABA genes include UGA1, UGA2, and UGA4","termid":"PBO:0087856"}


id: PBO:0068909
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 152, pseudogene","termid":"PBO:0068909"}


id: MONDO:0013484
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any cataract in which the cause of the disease is a mutation in the TDRD7 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cataract","termid":"MONDO:0005129"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"cataract 36","secondary_identifiers":["DOID:0110247","UMLS:C3151304","MEDGEN:462654","OMIM:613887"],"synonyms":[{"name":"CATC4","type":"exact"},{"name":"CTRCT36","type":"exact"},{"name":"TDRD7 cataract (disease)","type":"exact"},{"name":"autosomal recessive congenital cataract 4","type":"exact"},{"name":"cataract (disease) caused by mutation in TDRD7","type":"exact"},{"name":"cataract 36","type":"exact"},{"name":"cataract type 36","type":"exact"},{"name":"cataract, autosomal recessive congenital 4","type":"related"}],"termid":"MONDO:0013484","xrefs":{"Monarch":{"xref_id":"0013484"}}}


id: PBO:0048472
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GCNA pseudogene 1","termid":"PBO:0048472"}


id: SO:0000920
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An edit to insert a cytidine.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000920 insert_C (obsolete SO:0000920)","synonyms":[{"name":"insert C","type":"exact"}],"termid":"SO:0000920"}


id: FYPO:0007422
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A microtubule cytoskeleton organization phenotype observed in the vegetative growth phase of the life cycle in which nucleation of spindle microtubules from the spindle pole body (SPB) does not occur.","definition_xrefs":["PomBase:mah","PMID:19942852"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal microtubule nucleation during vegetative growth","termid":"FYPO:0005692"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0000054","FYPO:0001320"],"is_obsolete":false,"name":"abolished mitotic spindle microtubule nucleation from spindle pole body","synonyms":[{"name":"abolished mitotic spindle microtubule nucleation from SPB","type":"exact"},{"name":"abolished mitotic spindle microtubule nucleation from spindle pole body during mitotic M phase","type":"exact"},{"name":"mitotic spindle microtubule nucleation from spindle pole body abolished","type":"exact"}],"termid":"FYPO:0007422"}


id: GO:0120013
data:
  {"annotated_genes":["SJAG_03721","SJAG_03741","SJAG_01722","SJAG_02323","SJAG_00576","SJAG_00230","SJAG_01225","SJAG_03416","SJAG_01229","SJAG_04370","SJAG_03710","SJAG_03338","SJAG_03746","SJAG_03718","SJAG_00355","SJAG_02375","SJAG_01329","SJAG_03851","SJAG_16459","SJAG_06440","SJAG_01305","SJAG_03172","SJAG_01590"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[108980],"is_not":false,"summary":null,"term":"GO:0120013"},{"annotations":[102535,70526,101607],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990050"},{"annotations":[97880],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0120019"},{"annotations":[73585,70397,76917,76634,74866],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008526"},{"annotations":[107844,107970,106180,107070,91231,89554,104365],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0120014"},{"annotations":[116553,94574,102935,77284,108530,109690,111661],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0120015"}]},"cv_name":"molecular_function","definition":"Removes a lipid from a membrane or a monolayer lipid particle, transports it through the aqueous phase while protected in a hydrophobic pocket, and brings it to an acceptor membrane or lipid particle. This results in intermembrane transfer of lipids.","definition_xrefs":["PMID:24220498","PMID:25797198","PMID:20823909","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipid transporter activity","termid":"GO:0005319"}],"gene_count":23,"genes_by_uniquename":{"SJAG_00230":null,"SJAG_00355":null,"SJAG_00576":null,"SJAG_01225":null,"SJAG_01229":null,"SJAG_01305":null,"SJAG_01329":null,"SJAG_01590":null,"SJAG_01722":null,"SJAG_02323":null,"SJAG_02375":null,"SJAG_03172":null,"SJAG_03338":null,"SJAG_03416":null,"SJAG_03710":null,"SJAG_03718":null,"SJAG_03721":null,"SJAG_03741":null,"SJAG_03746":null,"SJAG_03851":null,"SJAG_04370":null,"SJAG_06440":null,"SJAG_16459":null},"genotype_count":0,"in_subsets":["mf_goslim_japonicus"],"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0003674"],"is_obsolete":false,"name":"lipid transfer activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-9856502","Reactome:R-HSA-9856510"],"synonyms":[{"name":"intermembrane lipid transfer activity","type":"exact"},{"name":"lipid carrier activity","type":"exact"}],"termid":"GO:0120013","terms_by_termid":{"GO:0008526":null,"GO:0120013":null,"GO:0120014":null,"GO:0120015":null,"GO:0120019":null,"GO:1990050":null}}


id: PBO:0051295
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 1D-22 (pseudogene)","termid":"PBO:0051295"}


id: MONDO:1012675
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hereditary osteochondrodysplasia that occurs in dogs due to a mutation in the SLC13A1 gene.","definition_xrefs":["PMID:23300579"],"direct_ancestors":[{"relation_name":"is_a","term_name":"osteochondrodysplasia, dog","termid":"MONDO:1011194"},{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"osteochondrodysplasia, SLC13A1-related, dog","secondary_identifiers":["OMIA:001400-9615"],"synonyms":[{"name":"chondrodysplasia, SLC13A1-related in Canis lupus familiaris (dog)","type":"exact"},{"name":"osteochondrodysplasia, dog","type":"related"},{"name":"pseudoachondroplastic dysplasia, dog","type":"related"}],"termid":"MONDO:1012675","xrefs":{"Monarch":{"xref_id":"1012675"}}}


id: GO:0097652
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A phosphatidylinositol 3-kinase complex that contains a catalytic subunit of a phosphatidylinositol 3-kinase (PI3K) enzyme and one or more adaptor proteins. There is no known obligatory regulatory subunit. The class II PI3K (PI3KC2) subfamily of genes has members in vertebrates, worm and fly, but none in yeast.","definition_xrefs":["PMID:24587488","GOC:ha"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylinositol 3-kinase complex","termid":"GO:0005942"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"phosphatidylinositol 3-kinase complex, class II","synonyms":[{"name":"class II PI3K complex","type":"exact"},{"name":"class II phosphatidylinositol 3-kinase complex","type":"exact"}],"termid":"GO:0097652"}


id: PBO:0017938
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-hydroxyacyl-CoA dehydratase involved in very long-chain fatty acid elongation Phs1 (predicted)","termid":"PBO:0017938"}


id: GO:0102073
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: OPC8-3-hydroxyacyl-CoA = OPC8-trans-2-enoyl-CoA + H2O.","definition_xrefs":["GOC:pz","EC:4.2.1.17"],"gene_count":0,"genotype_count":0,"name":"obsolete OPC8-trans-2-enoyl-CoA hydratase activity (obsolete GO:0102073)","termid":"GO:0102073"}


id: GO:0071594
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The adhesion of one thymocyte (an immature T cell) to one or more other thymocytes via adhesion molecules.","definition_xrefs":["GOC:sl","PMID:1382990"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T cell aggregation","termid":"GO:0070489"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"thymocyte aggregation","synonyms":[{"name":"T cell precursor aggregation","type":"exact"},{"name":"immature T cell aggregation","type":"broad"},{"name":"immature T-cell aggregation","type":"broad"},{"name":"immature T-lymphocyte aggregation","type":"exact"},{"name":"thymic lymphocyte aggregation","type":"exact"}],"termid":"GO:0071594"}


id: GO:0046885
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of hormones.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of biosynthetic process","termid":"GO:0009889"},{"relation_name":"is_a","term_name":"regulation of hormone metabolic process","termid":"GO:0032350"},{"relation_name":"regulates","term_name":"hormone biosynthetic process","termid":"GO:0042446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of hormone biosynthetic process","synonyms":[{"name":"regulation of hormone anabolism","type":"exact"},{"name":"regulation of hormone biosynthesis","type":"exact"},{"name":"regulation of hormone formation","type":"exact"},{"name":"regulation of hormone synthesis","type":"exact"}],"termid":"GO:0046885"}


id: GO:0062120
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components during meiotic prophase to form a LinE complex, the protein complex that associates with chromatin to form linear elements in fission yeast. In S. pombe, the LinE complex contains four main structural components (Rec10, Rec25, Rec27, and Mug20) and other associated proteins.","definition_xrefs":["PMID:30640914"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"},{"relation_name":"is_a","term_name":"meiotic cell cycle process","termid":"GO:1903046"},{"relation_name":"part_of","term_name":"linear element assembly","termid":"GO:0030999"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0140013"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0007049","GO:0140013","GO:0044085","GO:0065003","GO:0008150"],"is_obsolete":false,"name":"LinE complex assembly","termid":"GO:0062120"}


id: FYPO:0000245
data:
  {"alleles_by_uniquename":{"SJAG_02527:allele-1":{"allele_type":"disruption","description":"RNA sequencing revealed that only the 5' end of the disrupted allele showed low RNA expression and coverage","gene_uniquename":"SJAG_02527","name":"lig4::KanMX6","uniquename":"SJAG_02527:allele-1"},"SJAG_04312:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04312","name":"pka1delta","uniquename":"SJAG_04312:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[119895],"is_not":false,"summary":null,"term":"FYPO:0000245"},{"annotations":[119756],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0005231"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which a smaller than normal proportion of cells in the population remains viable after entering stationary phase.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal phenotype","termid":"FYPO:0001985"},{"relation_name":"is_a","term_name":"cell population viability","termid":"FYPO:0002057"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02527":null,"SJAG_04312":null},"genotype_count":2,"genotypes_by_uniquename":{"lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown":{"display_name":"lig4::KanMX6(RNA sequencing revealed that only the 5' end of the disrupted allele showed low RNA expression and coverage)[Knockdown]","display_uniquename":"lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02527:allele-1","expression":"Knockdown"}]}]},"pka1delta":{"display_name":"pka1delta","display_uniquename":"pka1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04312:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0002057","FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"loss of viability in stationary phase","references_by_uniquename":{"PMID:27678009":null,"PMID:37233261":null},"single_locus_annotated_genes":["SJAG_04312","SJAG_02527"],"single_locus_genotype_uniquenames":["lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown","pka1delta"],"synonyms":[{"name":"decreased chronological lifespan","type":"related"},{"name":"decreased longevity","type":"exact"},{"name":"decreased viability in stationary phase","type":"exact"},{"name":"growth defect, required for stationary phase","type":"related"},{"name":"increased chronological cell aging","type":"related"},{"name":"loss of cell population viability in stationary phase","type":"exact"},{"name":"reduced viability in stationary phase","type":"exact"}],"termid":"FYPO:0000245","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYPO:0000245":null,"FYPO:0005231":null}}


id: GO:0046640
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of alpha-beta T cell proliferation.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of T cell proliferation","termid":"GO:0042129"},{"relation_name":"is_a","term_name":"regulation of alpha-beta T cell activation","termid":"GO:0046634"},{"relation_name":"regulates","term_name":"alpha-beta T cell proliferation","termid":"GO:0046633"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of alpha-beta T cell proliferation","synonyms":[{"name":"regulation of alpha-beta T lymphocyte proliferation","type":"exact"},{"name":"regulation of alpha-beta T-cell proliferation","type":"exact"},{"name":"regulation of alpha-beta T-lymphocyte proliferation","type":"exact"}],"termid":"GO:0046640"}


id: PBO:0031493
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_actin_cortical_patch_assembly","termid":"PBO:0031493"}


id: PBO:0017428
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-is_a","termid":"PBO:0017428"}


id: PBO:0073325
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serpin family A member 1","termid":"PBO:0073325"}


id: PBO:0044880
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DENND6A antisense RNA 1","termid":"PBO:0044880"}


id: PBO:0005824
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5.1.1.1","termid":"PBO:0005824"}


id: GO:1905086
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of bioluminescence.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","GOC:BHF","PMID:10913092","GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of metabolic process","termid":"GO:0009892"},{"relation_name":"is_a","term_name":"regulation of bioluminescence","termid":"GO:1905085"},{"relation_name":"negatively_regulates","term_name":"bioluminescence","termid":"GO:0008218"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of bioluminescence","synonyms":[{"name":"down regulation of bioluminescence","type":"exact"},{"name":"down-regulation of bioluminescence","type":"exact"},{"name":"downregulation of bioluminescence","type":"exact"},{"name":"inhibition of bioluminescence","type":"narrow"}],"termid":"GO:1905086"}


id: MONDO:0000523
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete conjunctival nevus (obsolete MONDO:0000523)","termid":"MONDO:0000523","xrefs":{"Monarch":{"xref_id":"0000523"}}}


id: MONDO:0009679
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"arthrogryposis multiplex congenita","termid":"MONDO:0015168"},{"relation_name":"is_a","term_name":"congenital muscular dystrophy","termid":"MONDO:0019950"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0002320","MONDO:0005336"],"is_obsolete":false,"name":"arthrogryposis due to muscular dystrophy","secondary_identifiers":["MESH:C564985","MEDGEN:342608","Orphanet:1155","UMLS:C1850865","OMIM:253900","DOID:0110631","GARD:779"],"synonyms":[{"name":"congenital muscular dystrophy producing arthrogryposis","type":"exact"},{"name":"muscular dystrophy, congenital, producing arthrogryposis","type":"related"}],"termid":"MONDO:0009679","xrefs":{"Monarch":{"xref_id":"0009679"}}}


id: PBO:0039118
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AIDA pseudogene 1","termid":"PBO:0039118"}


id: MONDO:0003744
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A melanoma arising from the choroid, ciliary body, or the iris. It is characterized by the presence of spindle-shaped melanocytes.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spindle cell melanoma","termid":"MONDO:0006427"},{"relation_name":"is_a","term_name":"uveal melanoma","termid":"MONDO:0006486"},{"relation_name":"is_a","term_name":"malignant spindle cell neoplasm","termid":"MONDO:0020663"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0004992"],"is_obsolete":false,"name":"spindle cell intraocular melanoma","secondary_identifiers":["UMLS:C0279687","NCIT:C7986","MEDGEN:76015","DOID:6037"],"synonyms":[{"name":"spindle cell melanoma of the uvea","type":"exact"},{"name":"spindle cell melanoma of uvea","type":"exact"},{"name":"spindle cell uveal melanoma","type":"exact"},{"name":"uveal spindle cell melanoma","type":"exact"}],"termid":"MONDO:0003744","xrefs":{"Monarch":{"xref_id":"0003744"}}}


id: MONDO:0014378
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any primary ciliary dyskinesia in which the cause of the disease is a mutation in the CCNO gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary ciliary dyskinesia","termid":"MONDO:0016575"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"primary ciliary dyskinesia 29","secondary_identifiers":["NCIT:C172393","MEDGEN:862971","DOID:0110600","GARD:16025","OMIM:615872","UMLS:C4014534"],"synonyms":[{"name":"CCNO primary ciliary dyskinesia","type":"exact"},{"name":"CILD29","type":"exact"},{"name":"ciliary dyskinesia, primary, 29","type":"related"},{"name":"ciliary dyskinesia, primary, 29, without situs inversus","type":"related"},{"name":"ciliary dyskinesia, primary, type 29","type":"exact"},{"name":"primary ciliary dyskinesia 29 without situs inversus","type":"exact"},{"name":"primary ciliary dyskinesia caused by mutation in CCNO","type":"exact"},{"name":"primary ciliary dyskinesia type 29","type":"exact"}],"termid":"MONDO:0014378","xrefs":{"Monarch":{"xref_id":"0014378"}}}


id: PBO:0055630
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3069","termid":"PBO:0055630"}


id: GO:0090104
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which relatively unspecialized cells acquire specialized structural and functional features of a pancreatic epsilon cell. A pancreatic epsilon cell is a cell in the pancreas that secretes ghrelin.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enteroendocrine cell differentiation","termid":"GO:0035883"},{"relation_name":"part_of","term_name":"endocrine pancreas development","termid":"GO:0031018"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pancreatic epsilon cell differentiation","synonyms":[{"name":"pancreatic E cell differentiation","type":"exact"}],"termid":"GO:0090104"}


id: PBO:0004257
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RSC complex subunit Rsc9","termid":"PBO:0004257"}


id: PBO:0080154
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VCAN antisense RNA 1","termid":"PBO:0080154"}


id: PBO:0047174
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 197 Y-linked member 7","termid":"PBO:0047174"}


id: PATO:0002329
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's exhibiting a upward bending of its leaves or other plant parts.","definition_xrefs":["PATOC:DS"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyponastic","termid":"PATO:0002329"}


id: GO:0002838
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of an immune response to tumor cell.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of response to tumor cell","termid":"GO:0002835"},{"relation_name":"is_a","term_name":"regulation of immune response to tumor cell","termid":"GO:0002837"},{"relation_name":"is_a","term_name":"negative regulation of immune response","termid":"GO:0050777"},{"relation_name":"negatively_regulates","term_name":"immune response to tumor cell","termid":"GO:0002418"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of immune response to tumor cell","synonyms":[{"name":"down regulation of immune response to tumor cell","type":"exact"},{"name":"down-regulation of immune response to tumor cell","type":"exact"},{"name":"downregulation of immune response to tumor cell","type":"exact"},{"name":"inhibition of immune response to tumor cell","type":"narrow"},{"name":"negative regulation of immune response to tumour cell","type":"exact"}],"termid":"GO:0002838"}


id: PBO:0082941
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytoplasmic glyoxalase II; catalyzes the hydrolysis of S-D-lactoylglutathione into glutathione and D-lactate; GLO2 has a paralog, GLO4, that arose from the whole genome duplication","termid":"PBO:0082941"}


id: FYPO:0004364
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a dioxygenase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal oxidoreductase activity","termid":"FYPO:0000689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000707","FYPO:0000654","FYPO:0000661","FYPO:0001985"],"is_obsolete":false,"name":"abnormal dioxygenase activity","termid":"FYPO:0004364"}


id: GO:0003177
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the pulmonary valve over time, from its formation to the mature structure.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"semi-lunar valve development","termid":"GO:1905314"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pulmonary valve development","termid":"GO:0003177"}


id: PBO:0008887
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mating-type M-specific polypeptide Mi at silenced MAT3 locus","termid":"PBO:0008887"}


id: PBO:0113278
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Plasma membrane transporter for choline, ethanolamine, and carnitine; involved in the uptake of nitrogen mustard and the uptake of glycine betaine during hypersaline stress; co-regulated with phospholipid biosynthetic genes and negatively regulated by choline and myo-inositol; human FLVCR2 (MFSD7c), a choline transporter involved in Fowler syndrome, can complement the yeast null mutant","termid":"PBO:0113278"}


id: PBO:0076450
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tafazzin, phospholipid-lysophospholipid transacylase","termid":"PBO:0076450"}


id: PBO:0113513
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Tyrosyl-DNA phosphodiesterase I; hydrolyzes 3' and 5'-phosphotyrosyl bonds; involved in the repair of DNA lesions created by topo I and topo II, including DNA-protein cross-links; mutations in the human homolog, TDP1, result in the neurodegenerative disease, spinocerebellar ataxia with axonal neuropathy (SCAN1); yeast cells and human rhabdomyosarcoma lines that overexpress TDP1 both exhibit elevated dosage chromosomal instability (dCIN)","termid":"PBO:0113513"}


id: PBO:0091666
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long non-coding RNAs (mlonRNA) initiated from sites upstream of fbp1 are transcribed prior to full transcriptional activation of fbp1 during glucose starvation","termid":"PBO:0091666"}


id: GO:0033698
data:
  {"annotated_genes":["SJAG_02981","SJAG_00441","SJAG_01230","SJAG_03441","SJAG_00581","SJAG_00868","SJAG_02439","SJAG_04576","SJAG_03230","SJAG_03867","SJAG_03255","SJAG_02846","SJAG_04758"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[76053,76275,76350,77607,79349,80638,89429,94963,103096,105354,107072,109788,114561],"is_not":false,"summary":null,"term":"GO:0033698"}]},"cv_name":"cellular_component","definition":"A histone deacetylase complex which deacetylates histones preferentially in promoter regions. Composed of a two copies of catalytic histone deacetylase subunit (S. pombe Clr6/ S. cerevisiae Rpd3p), an Sds-3 family protein (S. pombe /S. cerevisiae Sds3(p) ), two copies of SIN3 family co-repressor (S. pombe Pst1/ S. cerevisiae Sin3p, a WD repeat protein/ histone chaperone (S. pombe Prw1/ S. cerevisiae Ume1p), and a zf- PHD finger ( S. pombe Png2/ S. cerevisiae Pho23p), plus 4 additional subunits, and associated factors.","definition_xrefs":["GOC:vw","PMID:17450151"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Sin3-type complex","termid":"GO:0070822"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00441":null,"SJAG_00581":null,"SJAG_00868":null,"SJAG_01230":null,"SJAG_02439":null,"SJAG_02846":null,"SJAG_02981":null,"SJAG_03230":null,"SJAG_03255":null,"SJAG_03441":null,"SJAG_03867":null,"SJAG_04576":null,"SJAG_04758":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005654"},{"rel_name":"part_of","termid":"GO:0005694"}],"interesting_parent_ids":["GO:0005694","GO:0005634","GO:0005575","GO:0005654","GO:0032991"],"is_obsolete":false,"name":"Rpd3L complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0000508"],"synonyms":[{"name":"Clr6 histone deacetylase complex I/I'","type":"exact"},{"name":"Clr6L complex","type":"exact"},{"name":"Rpd3C(L)","type":"exact"},{"name":"Sin3L complex","type":"exact"}],"termid":"GO:0033698","terms_by_termid":{"GO:0033698":null}}


id: MONDO:0000358
data:
  {"annotated_genes":["SJAG_03843"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87346],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013378"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"disorder of facial skeleton","termid":"MONDO:0023369"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03843":null},"genotype_count":0,"is_obsolete":false,"name":"orofacial cleft","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0050567","UMLS:C3266076","SCTID:449790007","MEDGEN:472000","OMIMPS:119530"],"termid":"MONDO:0000358","terms_by_termid":{"MONDO:0013378":null},"xrefs":{"Monarch":{"xref_id":"0000358"}}}


id: PBO:0059600
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ATP6 pseudogene 12","termid":"PBO:0059600"}


id: GO:0001784
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a phosphorylated tyrosine residue within a protein.","definition_xrefs":["PMID:14636584"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein phosphorylated amino acid binding","termid":"GO:0045309"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"phosphotyrosine residue binding","synonyms":[{"name":"phosphotyrosine binding","type":"related"}],"termid":"GO:0001784"}


id: PBO:0077966
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ala (AGC) 18-2","termid":"PBO:0077966"}


id: PBO:0072333
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S26 pseudogene 19","termid":"PBO:0072333"}


id: PBO:0062543
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 9 subfamily I member 2 pseudogene","termid":"PBO:0062543"}


id: PBO:0048455
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GRIP and coiled-coil domain containing 2","termid":"PBO:0048455"}


id: PBO:0091409
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"during meiotic recombination Rad51 foci partially colocalize with linear elements","termid":"PBO:0091409"}


id: PBO:0070137
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 51 pseudogene","termid":"PBO:0070137"}


id: GO:0000512
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A post-transcriptional gene silencing pathway in which regulatory long noncoding RNAs (lncRNAs) elicit silencing of specific target genes, often miRNAs or mRNAs.","definition_xrefs":["PMID:35055152","PMID:34454184"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulatory ncRNA-mediated post-transcriptional gene silencing","termid":"GO:0035194"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"lncRNA-mediated post-transcriptional gene silencing","synonyms":[{"name":"lncRNA-mediated gene silencing","type":"broad"}],"termid":"GO:0000512"}


id: PBO:0067152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 202, pseudogene","termid":"PBO:0067152"}


id: PBO:0046965
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 83 member C","termid":"PBO:0046965"}


id: PBO:0052629
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 6C","termid":"PBO:0052629"}


id: FYPO:0003374
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of coenzyme Q10 measured in a cell is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal level of substance in cell during vegetative growth","termid":"FYPO:0001316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001312","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"normal cellular coenzyme Q10 level","synonyms":[{"name":"normal cellular coenzyme Q10 accumulation","type":"related"},{"name":"normal cellular coenzyme Q10 level during mitotic cell cycle","type":"related"},{"name":"normal cellular coenzyme Q10 level during vegetative growth","type":"exact"}],"termid":"FYPO:0003374"}


id: PBO:0001271
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GCK subfamily","termid":"PBO:0001271"}


id: GO:0008666
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-2,3,4,5-tetrahydrodipicolinate + H2O + succinyl-CoA = L-2-succinylamino-6-oxopimelate + CoA.","definition_xrefs":["RHEA:17325","EC:2.3.1.117"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-succinyltransferase activity","termid":"GO:0016749"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016746","GO:0003824"],"is_obsolete":false,"name":"2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity","secondary_identifiers":["MetaCyc:TETHYDPICSUCC-RXN","KEGG_REACTION:R04365"],"synonyms":[{"name":"THDP N-succinyltransferase activity","type":"exact"},{"name":"succinyl-CoA:(S)-2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity","type":"related"},{"name":"succinyl-CoA:2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity","type":"related"},{"name":"succinyl-CoA:tetrahydrodipicolinate N-succinyltransferase activity","type":"related"},{"name":"tetrahydrodipicolinate N-succinyltransferase activity","type":"related"},{"name":"tetrahydrodipicolinate succinylase activity","type":"related"},{"name":"tetrahydrodipicolinate succinyltransferase activity","type":"related"},{"name":"tetrahydropicolinate succinylase activity","type":"related"}],"termid":"GO:0008666"}


id: GO:0141221
data:
  {"annotated_genes":["SJAG_03627","SJAG_00581","SJAG_03844"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[64108,109795],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031078"},{"annotations":[109796],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032129"},{"annotations":[109797],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140937"},{"annotations":[97539,109798],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034739"},{"annotations":[109799],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0180032"},{"annotations":[109800],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0180033"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + N6-acetyl-L-lysyl-[histone] = acetate + L-lysyl-[histone].","definition_xrefs":["PMID:28450737","PMID:24691964","RHEA:58196"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone deacetylase activity","termid":"GO:0004407"},{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00581":null,"SJAG_03627":null,"SJAG_03844":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0019213"},{"rel_name":"is_a","termid":"GO:0033558"}],"interesting_parent_ids":["GO:0140096","GO:0019213","GO:0003824","GO:0016810","GO:0016787","GO:0003674","GO:0033558"],"is_obsolete":false,"name":"histone deacetylase activity, hydrolytic mechanism","references_by_uniquename":{"GO_REF:0000104":null,"GO_REF:0000107":null},"secondary_identifiers":["EC:3.5.1.98","MetaCyc:3.5.1.98-RXN"],"synonyms":[{"name":"histone deacetylase activity","type":"broad"},{"name":"histone deacetylase activity, NAD-independent","type":"exact"}],"termid":"GO:0141221","terms_by_termid":{"GO:0031078":null,"GO:0032129":null,"GO:0034739":null,"GO:0140937":null,"GO:0180032":null,"GO:0180033":null}}


id: FYPO:0006069
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which an interaction between a protein and a small RNA (sRNA) is increased. One of the relevant gene products may be encoded by the mutated gene, or both the RNA and protein may be encoded by genes other than the mutated one.","definition_xrefs":["PMID:28541282","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein-RNA interaction","termid":"FYPO:0002135"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0002131"}],"interesting_parent_ids":["FYPO:0002131","FYPO:0000707","FYPO:0000652","FYPO:0001985"],"is_obsolete":false,"name":"increased small RNA binding","synonyms":[{"name":"increased protein-small RNA interaction","type":"exact"},{"name":"increased sRNA binding","type":"exact"},{"name":"increased small regulatory RNA binding","type":"exact"}],"termid":"FYPO:0006069"}


id: MOD:01712
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with one of the Applied Biosystems iTRAQ8plex reagent reporter+balance groups.","definition_xrefs":["Unimod:214#N-term"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isotope tagged reagent alpha-amino acylated residue","termid":"MOD:01708"},{"relation_name":"is_a","term_name":"iTRAQ8plex reporter+balance reagent N-acylated residue","termid":"MOD:01710"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iTRAQ8plex reporter+balance reagent acylated N-terminal","synonyms":[{"name":"(4-methylpiperazin-1-yl)acetyl","type":"exact"}],"termid":"MOD:01712"}


id: PBO:0079389
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin beta 3 class III pseudogene 1","termid":"PBO:0079389"}


id: PBO:0002821
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Set3 complex subunit Snt1","termid":"PBO:0002821"}


id: PR:O14000
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A methionyl-tRNA synthetase, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01668","PANTHER:PTHR11946:SF1","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methionine--tRNA ligase, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC27E2.06c","secondary_identifiers":["UniProtKB:O14000"],"synonyms":[{"name":"MtMetRS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-MARS2","type":"exact"},{"name":"mitochondrial methionyl-tRNA synthetase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14000"}


id: GO:0052662
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: all-trans-zeaxanthin + 4 H+ + 2 O2 + 4 reduced [2Fe-2S]-[ferredoxin] = all-trans-violaxanthin + 2 H2O + 4 oxidized [2Fe-2S]-[ferredoxin].","definition_xrefs":["RHEA:32443"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen","termid":"GO:0016713"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"zeaxanthin epoxidase activity","secondary_identifiers":["MetaCyc:RXN-13193","GO:0009540","EC:1.14.15.21","GO:0052663","KEGG_REACTION:R10070"],"synonyms":[{"name":"antheraxanthin epoxidase activity","type":"narrow"},{"name":"zea-epoxidase activity","type":"related"},{"name":"zeaxanthin epoxidase [overall] activity","type":"related"}],"termid":"GO:0052662"}


id: GO:0048709
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires the specialized features of an oligodendrocyte. An oligodendrocyte is a type of glial cell involved in myelinating the axons of neurons in the central nervous system.","definition_xrefs":["PMID:15139015","GOC:vp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glial cell differentiation","termid":"GO:0010001"},{"relation_name":"part_of","term_name":"central nervous system development","termid":"GO:0007417"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"oligodendrocyte differentiation","termid":"GO:0048709"}


id: PBO:0061068
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NFKB activating protein like","termid":"PBO:0061068"}


id: MONDO:0001285
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"endometriosis","termid":"MONDO:0005133"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endometriosis of pelvic peritoneum","secondary_identifiers":["MEDGEN:510249","DOID:11429","SCTID:198251001","ICD9:617.3","ICD10CM:N80.3","icd11.foundation:1015401835","UMLS:C0156345"],"termid":"MONDO:0001285","xrefs":{"Monarch":{"xref_id":"0001285"}}}


id: PBO:0080098
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UTP3 small subunit processome component","termid":"PBO:0080098"}


id: PBO:0050002
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HIF1A stabilizing long noncoding RNA","termid":"PBO:0050002"}


id: MONDO:0010158
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T-substance anomaly","secondary_identifiers":["UMLS:C1848724","OMIM:276200","MEDGEN:338528"],"synonyms":[{"name":"T-substance anomaly","type":"exact"}],"termid":"MONDO:0010158","xrefs":{"Monarch":{"xref_id":"0010158"}}}


id: GO:0021556
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that gives rise to the central nervous system. This process pertains to the initial formation of a structure from unspecified parts. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord.","definition_xrefs":["GOC:jid","GOC:dgh","GOC:cls","ISBN:0582227089","GOC:dph","GO_REF:0000021"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"central nervous system morphogenesis","termid":"GO:0021551"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"central nervous system formation","termid":"GO:0021556"}


id: PBO:0083389
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps HRT1, a verified gene that encodes an SCF ubiquitin ligase subunit","termid":"PBO:0083389"}


id: PBO:0036454
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ABC1 kinase family ubiquinone biosynthesis ATPase Abc1/Coq8","termid":"PBO:0036454"}


id: GO:0035605
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of a nitric oxide (NO) group to a sulphur atom within a cysteine residue of a protein.","definition_xrefs":["GOC:sp","PMID:20972426","PMID:20972425"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity, transferring nitrogenous groups","termid":"GO:0016769"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016769","GO:0003824","GO:0016740","GO:0003674","GO:0140096"],"is_obsolete":false,"name":"peptidyl-cysteine S-nitrosylase activity","synonyms":[{"name":"S-nitrosylase activity","type":"exact"},{"name":"protein nitrosylase activity","type":"related"}],"termid":"GO:0035605"}


id: PBO:0004262
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5-formyltetrahydrofolate cyclo-ligase (predicted)","termid":"PBO:0004262"}


id: MONDO:1012719
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any ametopodia that occurs in chickens with recessive inheritance.","definition_xrefs":["PMID:10912683"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bird disease","termid":"MONDO:0024905"},{"relation_name":"is_a","term_name":"iatrogenic disease, non-human animal","termid":"MONDO:1011322"},{"relation_name":"is_a","term_name":"musculoskeletal system disorder, non-human animal","termid":"MONDO:1011335"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ametapodia-2, chicken","secondary_identifiers":["OMIA:001636-9031"],"termid":"MONDO:1012719","xrefs":{"Monarch":{"xref_id":"1012719"}}}


id: GO:0043416
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of skeletal muscle.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to external stimulus","termid":"GO:0032101"},{"relation_name":"is_a","term_name":"regulation of developmental growth","termid":"GO:0048638"},{"relation_name":"is_a","term_name":"regulation of multicellular organismal development","termid":"GO:2000026"},{"relation_name":"regulates","term_name":"skeletal muscle tissue regeneration","termid":"GO:0043403"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of skeletal muscle tissue regeneration","termid":"GO:0043416"}


id: MONDO:0012370
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An autosomal recessive nonsyndromic deafness that has material basis in variation in the chromosome region 11p13-p12.","definition_xrefs":["PMID:16158433","DOID:0110508"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hearing loss, autosomal recessive","termid":"MONDO:0019588"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0019497"}],"interesting_parent_ids":["MONDO:0019497","MONDO:0006025"],"is_obsolete":false,"name":"autosomal recessive nonsyndromic hearing loss 51","secondary_identifiers":["MEDGEN:355880","OMIM:609941","GARD:9918","UMLS:C1864968","MESH:C538202"],"synonyms":[{"name":"DFNB51","type":"narrow"},{"name":"autosomal recessive deafness 51","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness 51","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness type 51","type":"narrow"},{"name":"deafness, autosomal recessive 51","type":"narrow"}],"termid":"MONDO:0012370","xrefs":{"Monarch":{"xref_id":"0012370"}}}


id: PBO:0055844
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LRIG3 divergent transcript","termid":"PBO:0055844"}


id: PR:O94661
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A TBC1 domain family member 20 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR20913:SF7","PRO:DNx","OMA:SCHPO02782"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase-activating protein gyp10 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC651.03c","secondary_identifiers":["UniProtKB:O94661"],"synonyms":[{"name":"Spom972h-TBC1D20","type":"exact"}],"termid":"PR:O94661"}


id: MONDO:0001953
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The presence of excessive white blood cells in the urine as determined by urinalysis.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"urinary system disorder","termid":"MONDO:0002118"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyuria","secondary_identifiers":["UMLS:C0034359","MESH:D011776","DOID:1439","icd11.foundation:2000630356","HP:0012085","MEDGEN:11078"],"synonyms":[{"name":"pus cells in urine","type":"exact"},{"name":"pyuria","type":"exact"},{"name":"pyuria (disease)","type":"exact"}],"termid":"MONDO:0001953","xrefs":{"Monarch":{"xref_id":"0001953"}}}


id: GO:0004611
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: phosphate + oxaloacetate = phosphoenolpyruvate + CO2 + other reaction products.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"phosphoenolpyruvate carboxykinase activity","synonyms":[{"name":"PEP carboxykinase activity","type":"related"},{"name":"PEPCK activity","type":"related"},{"name":"phosphopyruvate carboxylase activity","type":"related"}],"termid":"GO:0004611"}


id: MONDO:0000487
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A multifocal dystonia that involves the arm and leg on the same side of the body.","definition_xrefs":["DOID:0050846"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multifocal dystonia","termid":"MONDO:0000478"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0003441"}],"interesting_parent_ids":["MONDO:0003441"],"is_obsolete":false,"name":"hemidystonia","secondary_identifiers":["UMLS:C1960561","ICD9:333.99","MEDGEN:743329","SCTID:427232004"],"termid":"MONDO:0000487","xrefs":{"Monarch":{"xref_id":"0000487"}}}


id: MONDO:0004177
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Abnormal growth of the cells of the urethra (lower urinary tract) without malignant characteristics.","definition_xrefs":["NCIT:C3619"],"direct_ancestors":[{"relation_name":"is_a","term_name":"benign urinary system neoplasm","termid":"MONDO:0004180"},{"relation_name":"is_a","term_name":"urethra neoplasm","termid":"MONDO:0021239"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"benign urethral neoplasm","secondary_identifiers":["UMLS:C0154019","DOID:730","ICD9:223.81","SCTID:92466006","MEDGEN:57812"],"synonyms":[{"name":"benign neoplasm of the urethra","type":"exact"},{"name":"benign neoplasm of urethra","type":"exact"},{"name":"benign tumor of the urethra","type":"exact"},{"name":"benign tumor of urethra","type":"exact"},{"name":"benign tumour of the urethra","type":"exact"},{"name":"benign tumour of urethra","type":"exact"},{"name":"benign urethra neoplasm","type":"exact"},{"name":"benign urethra tumor","type":"exact"},{"name":"benign urethra tumour","type":"exact"},{"name":"benign urethral neoplasm","type":"exact"},{"name":"benign urethral tumor","type":"exact"},{"name":"benign urethral tumour","type":"exact"},{"name":"neoplasm. urethra","type":"exact"},{"name":"urethra benign neoplasm","type":"exact"},{"name":"urethral benign neoplasm","type":"related"}],"termid":"MONDO:0004177","xrefs":{"Monarch":{"xref_id":"0004177"}}}


id: SO:0001665
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sub element of the DCE core promoter element, with consensus sequence CTTC.","definition_xrefs":["SO:ke","PMID:16858867"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA_motif","termid":"SO:0000713"},{"relation_name":"part_of","term_name":"DCE","termid":"SO:0001664"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DCE_SI","synonyms":[{"name":"DCE SI","type":"related"}],"termid":"SO:0001665"}


id: PBO:0001064
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.1.1.61","termid":"PBO:0001064"}


id: MONDO:0016874
data:
  {"annotated_genes":["SJAG_00112"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85955],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014848"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndrome caused by partial chromosomal deletion","termid":"MONDO:0000761"},{"relation_name":"is_a","term_name":"chromosome 9 disorder","termid":"MONDO:0700016"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00112":null},"genotype_count":0,"is_obsolete":false,"name":"partial deletion of chromosome 9","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:20797","Orphanet:261806","MEDGEN:1825996","UMLS:C5679653"],"synonyms":[{"name":"partial deletion of chromosome type 9","type":"exact"},{"name":"partial monosomy of chromosome 9","type":"exact"}],"termid":"MONDO:0016874","terms_by_termid":{"MONDO:0014848":null},"xrefs":{"Monarch":{"xref_id":"0016874"}}}


id: PBO:0060739
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase complex assembly factor 4 pseudogene 4","termid":"PBO:0060739"}


id: GO:0048013
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by ephrin binding to its receptor, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:ceb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell surface receptor protein tyrosine kinase signaling pathway","termid":"GO:0007169"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"ephrin receptor signaling pathway","secondary_identifiers":["Reactome:R-HSA-2682334"],"synonyms":[{"name":"Eph receptor signaling pathway","type":"exact"},{"name":"Eph receptor signalling pathway","type":"exact"}],"termid":"GO:0048013"}


id: MONDO:0009002
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"coloboma","termid":"MONDO:0001476"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"coloboma, ocular, autosomal recessive","secondary_identifiers":["MEDGEN:860411","OMIM:216820","UMLS:C4011974"],"synonyms":[{"name":"coloboma, ocular, autosomal recessive","type":"exact"}],"termid":"MONDO:0009002","xrefs":{"Monarch":{"xref_id":"0009002"}}}


id: MONDO:1010488
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Ventricular septal defect that occurs in turkey.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bird disease","termid":"MONDO:0024905"},{"relation_name":"is_a","term_name":"ventricular septal defect, non-human animal","termid":"MONDO:1010022"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ventricular septal defect, turkey","secondary_identifiers":["OMIA:001041-9103"],"termid":"MONDO:1010488","xrefs":{"Monarch":{"xref_id":"1010488"}}}


id: MOD:00084
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-lysine residue to N6,N6-dimethyl-L-lysine.","definition_xrefs":["Unimod:36#K","PubMed:10550045","OMSSA:36","RESID:AA0075","PubMed:3100523","PubMed:14570711","PubMed:12964758","PubMed:8453381"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dimethylated residue","termid":"MOD:00429"},{"relation_name":"is_a","term_name":"N-methylated residue","termid":"MOD:00602"},{"relation_name":"is_a","term_name":"methylated lysine","termid":"MOD:00663"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"N6,N6-dimethyl-L-lysine","synonyms":[{"name":"(2S)-2-amino-6-(dimethylamino)hexanoic acid","type":"exact"},{"name":"Dimethyl","type":"related"},{"name":"MOD_RES N6,N6-dimethyllysine","type":"exact"},{"name":"N(zeta)-dimethyllysine","type":"exact"},{"name":"N6,N6-dimethyl-L-lysine","type":"exact"},{"name":"N6,N6-dimethylated L-lysine","type":"exact"},{"name":"N6Me2Lys","type":"exact"},{"name":"di-Methylation","type":"related"},{"name":"dimethylk","type":"exact"},{"name":"epsilon-dimethyllysine","type":"exact"},{"name":"lysine derivative Lys(y)","type":"exact"}],"termid":"MOD:00084"}


id: PBO:0062068
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 3 subfamily B member 1 pseudogene","termid":"PBO:0062068"}


id: PBO:0073672
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal regulatory protein beta 1","termid":"PBO:0073672"}


id: GO:0002309
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The expansion of a T cell population by cell division as part of an immune response.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T cell activation involved in immune response","termid":"GO:0002286"},{"relation_name":"is_a","term_name":"T cell proliferation","termid":"GO:0042098"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"T cell proliferation involved in immune response","synonyms":[{"name":"T cell proliferation during immune response","type":"related"},{"name":"T lymphocyte proliferation during immune response","type":"related"},{"name":"T-cell proliferation during immune response","type":"related"},{"name":"T-lymphocyte proliferation during immune response","type":"related"}],"termid":"GO:0002309"}


id: GO:0019235
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events required for an organism to receive a slow pain stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process. Slow pain is often subjectively described as an aching or throbbing pain; in humans, the signals from a slow pain stimulus are perceived and relayed along unmyelinated C fibers to the central nervous system, reaching their target in about 1 second. Slow pain is often associated with tissue destruction.","definition_xrefs":["PMID:38704307"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensory perception of pain","termid":"GO:0019233"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sensory perception of slow pain","termid":"GO:0019235"}


id: GO:0097352
data:
  {"annotated_genes":["SJAG_03345","SJAG_02414","SJAG_02699","SJAG_06309","SJAG_02433"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[70897,72640,75831],"is_not":false,"summary":null,"term":"GO:0097352"},{"annotations":[94950],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0016240"},{"annotations":[97947],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1901098"}]},"cv_name":"biological_process","definition":"Removal of PI3P and Atg8/LC3 after the closure of the phagophore and before the fusion with the endosome/lysosome (e.g. mammals and insects) or vacuole (yeast), and that very likely destabilizes other Atg proteins and thus enables their efficient dissociation and recycling.","definition_xrefs":["GOC:lf","GOC:autophagy","PMID:28077293"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex disassembly","termid":"GO:0032984"},{"relation_name":"part_of","term_name":"macroautophagy","termid":"GO:0016236"}],"gene_count":5,"genes_by_uniquename":{"SJAG_02414":null,"SJAG_02433":null,"SJAG_02699":null,"SJAG_03345":null,"SJAG_06309":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006914"}],"interesting_parent_ids":["GO:0006914","GO:0008150"],"is_obsolete":false,"name":"autophagosome maturation","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0000046"],"synonyms":[{"name":"autophagic vacuole fusion","type":"exact"},{"name":"autophagic vacuole maturation","type":"exact"},{"name":"autophagosome fusion","type":"related"}],"termid":"GO:0097352","terms_by_termid":{"GO:0016240":null,"GO:0097352":null,"GO:1901098":null}}


id: GO:1990610
data:
  {"annotated_genes":["SJAG_06635"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[64040],"is_not":false,"summary":null,"term":"GO:1990610"}]},"cv_name":"molecular_function","definition":"Binds to and modulates the activity of acetolactate synthase.","definition_xrefs":["PMID:8972574"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme regulator activity","termid":"GO:0030234"},{"relation_name":"regulates","term_name":"acetolactate synthase activity","termid":"GO:0003984"}],"gene_count":1,"genes_by_uniquename":{"SJAG_06635":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"regulates","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"regulates","termid":"GO:0016744"},{"rel_name":"is_a","termid":"GO:0030234"}],"interesting_parent_ids":["GO:0030234","GO:0098772","GO:0003824","GO:0016744","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"acetolactate synthase regulator activity","references_by_uniquename":{"GO_REF:0000002":null},"termid":"GO:1990610","terms_by_termid":{"GO:1990610":null}}


id: GO:0014888
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which striated muscle adapts, with consequent modifications to structural and/or functional phenotypes, in response to a stimulus. Stimuli include contractile activity, loading conditions, substrate supply, and environmental factors. These adaptive events occur in both muscle fibers and associated structures (motoneurons and capillaries), and they involve alterations in regulatory mechanisms, contractile properties and metabolic capacities.","definition_xrefs":["GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"muscle adaptation","termid":"GO:0043500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"striated muscle adaptation","synonyms":[{"name":"striated muscle plasticity","type":"related"}],"termid":"GO:0014888"}


id: PBO:0064097
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paired like homeodomain 2","termid":"PBO:0064097"}


id: PBO:0031635
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_gene_silencing","termid":"PBO:0031635"}


id: FYPO:0005365
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which kinetochore sliding, i.e. the movement of a kinetochore along spindle microtubules, during mitotic chromosome recapture does not occur.","definition_xrefs":["PMID:18256284","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic metaphase chromosome recapture","termid":"FYPO:0005362"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000138","FYPO:0000337","FYPO:0000641","FYPO:0000002"],"is_obsolete":false,"name":"abolished kinetochore sliding during chromosome recapture","synonyms":[{"name":"abolished chromosome migration during chromosome recapture","type":"exact"},{"name":"abolished chromosome movement during chromosome recapture","type":"exact"},{"name":"abolished kinetochore migration during chromosome recapture","type":"exact"},{"name":"abolished kinetochore sliding along kinetochore microtubule towards spindle pole body during chromosome recapture","type":"exact"},{"name":"abolished kinetochore sliding during chromosome recapture during mitosis","type":"exact"},{"name":"abolished kinetochore sliding during chromosome recapture during vegetative growth","type":"exact"},{"name":"abolished kinetochore sliding during kinetochore retrieval","type":"exact"},{"name":"abolished kinetochore sliding during kinetochore retrieval in mitotic metaphase","type":"exact"},{"name":"abolished kinetochore sliding during metaphase chromosome retrieval to the spindle pole body","type":"exact"},{"name":"abolished kinetochore sliding during mitotic metaphase chromosome recapture","type":"exact"},{"name":"abolished kinetochore sliding during sister kinetochore recapture","type":"exact"},{"name":"abolished kinetochore sliding towards SPB during chromosome recapture","type":"exact"},{"name":"abolished kinetochore sliding towards spindle pole body during chromosome recapture","type":"exact"},{"name":"kinetochore sliding during chromosome recapture abolished","type":"exact"}],"termid":"FYPO:0005365"}


id: PBO:0111758
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PAK-related kinase family","termid":"PBO:0111758"}


id: FYPO:0004909
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a protein that is normally localized to discrete regions in the nucleus, visible as foci or dots by microscopy, is abnormally localized such that dots cannot be observed, and the protein is instead distributed throughout the nucleus.","definition_xrefs":["PMID:8937982","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"loss of punctate nuclear protein localization","termid":"FYPO:0005863"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000138","FYPO:0005447","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"loss of punctate nuclear protein localization, with protein distributed in nucleus","synonyms":[{"name":"abolished punctate nuclear protein localization, with protein distributed in nucleus","type":"exact"},{"name":"loss of punctate nuclear protein localisation, with protein distributed in nucleus","type":"exact"},{"name":"loss of punctate nuclear protein localization, with protein dispersed through nucleus","type":"exact"},{"name":"loss of punctate nuclear protein localization, with protein distributed in nucleus, during mitotic cell cycle","type":"related"},{"name":"loss of punctate nuclear protein localization, with protein distributed in nucleus, during vegetative growth","type":"exact"},{"name":"loss of punctate nuclear protein localization, with protein distributed throughout nucleus","type":"exact"}],"termid":"FYPO:0004909"}


id: PBO:0069228
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 483, pseudogene","termid":"PBO:0069228"}


id: GO:0004813
data:
  {"annotated_genes":["SJAG_01797"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[76187],"is_not":false,"summary":null,"term":"GO:0004813"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + L-alanine + tRNA(Ala) = AMP + diphosphate + L-alanyl-tRNA(Ala).","definition_xrefs":["EC:6.1.1.7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoacyl-tRNA ligase activity","termid":"GO:0004812"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01797":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016874","GO:0140101","GO:0003824","GO:0140098","GO:0003674"],"is_obsolete":false,"name":"alanine-tRNA ligase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["RHEA:12540","MetaCyc:ALANINE--TRNA-LIGASE-RXN","Reactome:R-HSA-380177","Reactome:R-HSA-379864"],"synonyms":[{"name":"Ala-tRNA synthetase activity","type":"related"},{"name":"AlaRS","type":"related"},{"name":"L-alanine:tRNAAla ligase (AMP-forming)","type":"related"},{"name":"alanine tRNA synthetase activity","type":"related"},{"name":"alanine transfer RNA synthetase activity","type":"related"},{"name":"alanine translase activity","type":"related"},{"name":"alanine-transfer RNA ligase activity","type":"related"},{"name":"alanyl-tRNA synthetase activity","type":"exact"},{"name":"alanyl-transfer RNA synthetase activity","type":"related"},{"name":"alanyl-transfer ribonucleate synthase activity","type":"related"},{"name":"alanyl-transfer ribonucleate synthetase activity","type":"related"},{"name":"alanyl-transfer ribonucleic acid synthetase activity","type":"related"}],"termid":"GO:0004813","terms_by_termid":{"GO:0004813":null}}


id: GO:0002778
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The synthesis or release of an antibacterial peptide during an immune response, resulting in an increase in intracellular or extracellular levels.","definition_xrefs":["PMID:15638771","PMID:11807545","GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antimicrobial peptide production","termid":"GO:0002775"},{"relation_name":"part_of","term_name":"antibacterial humoral response","termid":"GO:0019731"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"antibacterial peptide production","termid":"GO:0002778"}


id: PBO:0086512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; conserved across S. cerevisiae strains; deletion decreases transcription of downstream gene ALD6; YPL062W is not an essential gene; null mutant shows decrease in terpenoid production; homozygous diploid mutant shows a decrease in glycogen accumulation","termid":"PBO:0086512"}


id: PATO:0000175
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000175 behavioral function (obsolete PATO:0000175)","termid":"PATO:0000175"}


id: GO:0045433
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process during wing vibration where the male insect produces a species-specific acoustic signal called a love song.","definition_xrefs":["PMID:11092827","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"male courtship behavior","termid":"GO:0008049"},{"relation_name":"part_of","term_name":"male courtship behavior, veined wing vibration","termid":"GO:0016545"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"male courtship behavior, veined wing generated song production","synonyms":[{"name":"male courtship behavior, song production","type":"broad"},{"name":"male courtship behaviour, song production","type":"broad"},{"name":"male courtship behaviour, veined wing generated song production","type":"exact"}],"termid":"GO:0045433"}


id: PBO:0089390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 snoRNP-associated protein Utp11","termid":"PBO:0089390"}


id: GO:1905424
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:17244647","GOC:bf","GOC:PARL"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of Wnt-mediated midbrain dopaminergic neuron differentiation (obsolete GO:1905424)","synonyms":[{"name":"regulation of Wg signaling pathway involved in DA neurogenesis from midbrain floor plate","type":"exact"},{"name":"regulation of Wg signaling pathway involved in mDA neuron differentiation","type":"exact"},{"name":"regulation of Wg signaling pathway involved in midbrain DA neurogenesis","type":"exact"},{"name":"regulation of Wg signaling pathway involved in midbrain dopaminergic neuron differentiation","type":"exact"},{"name":"regulation of Wg signaling pathway involved in midbrain dopaminergic neuron production","type":"exact"},{"name":"regulation of Wg signalling pathway involved in DA neurogenesis from midbrain floor plate","type":"exact"},{"name":"regulation of Wg signalling pathway involved in mDA neuron differentiation","type":"exact"},{"name":"regulation of Wg signalling pathway involved in midbrain DA neurogenesis","type":"exact"},{"name":"regulation of Wg signalling pathway involved in midbrain dopaminergic neuron differentiation","type":"exact"},{"name":"regulation of Wg signalling pathway involved in midbrain dopaminergic neuron production","type":"exact"},{"name":"regulation of Wingless signaling pathway involved in DA neurogenesis from midbrain floor plate","type":"exact"},{"name":"regulation of Wingless signaling pathway involved in mDA neuron differentiation","type":"exact"},{"name":"regulation of Wingless signaling pathway involved in midbrain DA neurogenesis","type":"exact"},{"name":"regulation of Wingless signaling pathway involved in midbrain dopaminergic neuron differentiation","type":"exact"},{"name":"regulation of Wingless signaling pathway involved in midbrain dopaminergic neuron production","type":"exact"},{"name":"regulation of Wingless signalling pathway involved in DA neurogenesis from midbrain floor plate","type":"exact"},{"name":"regulation of Wingless signalling pathway involved in mDA neuron differentiation","type":"exact"},{"name":"regulation of Wingless signalling pathway involved in midbrain DA neurogenesis","type":"exact"},{"name":"regulation of Wingless signalling pathway involved in midbrain dopaminergic neuron differentiation","type":"exact"},{"name":"regulation of Wingless signalling pathway involved in midbrain dopaminergic neuron production","type":"exact"},{"name":"regulation of Wnt receptor signaling pathway involved in DA neurogenesis from midbrain floor plate","type":"exact"},{"name":"regulation of Wnt receptor signaling pathway involved in mDA neuron differentiation","type":"exact"},{"name":"regulation of Wnt receptor signaling pathway involved in midbrain DA neurogenesis","type":"exact"},{"name":"regulation of Wnt receptor signaling pathway involved in midbrain dopaminergic neuron differentiation","type":"exact"},{"name":"regulation of Wnt receptor signaling pathway involved in midbrain dopaminergic neuron production","type":"exact"},{"name":"regulation of Wnt receptor signalling pathway involved in DA neurogenesis from midbrain floor plate","type":"exact"},{"name":"regulation of Wnt receptor signalling pathway involved in mDA neuron differentiation","type":"exact"},{"name":"regulation of Wnt receptor signalling pathway involved in midbrain DA neurogenesis","type":"exact"},{"name":"regulation of Wnt receptor signalling pathway involved in midbrain dopaminergic neuron differentiation","type":"exact"},{"name":"regulation of Wnt receptor signalling pathway involved in midbrain dopaminergic neuron production","type":"exact"},{"name":"regulation of Wnt signaling pathway involved in DA neurogenesis from midbrain floor plate","type":"exact"},{"name":"regulation of Wnt signaling pathway involved in mDA neuron differentiation","type":"exact"},{"name":"regulation of Wnt signaling pathway involved in midbrain DA neurogenesis","type":"exact"},{"name":"regulation of Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation","type":"exact"},{"name":"regulation of Wnt signaling pathway involved in midbrain dopaminergic neuron production","type":"exact"},{"name":"regulation of Wnt-activated signaling pathway involved in DA neurogenesis from midbrain floor plate","type":"related"},{"name":"regulation of Wnt-activated signaling pathway involved in mDA neuron differentiation","type":"related"},{"name":"regulation of Wnt-activated signaling pathway involved in midbrain DA neurogenesis","type":"related"},{"name":"regulation of Wnt-activated signaling pathway involved in midbrain dopaminergic neuron differentiation","type":"related"},{"name":"regulation of Wnt-activated signaling pathway involved in midbrain dopaminergic neuron production","type":"related"},{"name":"regulation of Wnt-mediated midbrain DA neuron differentiation","type":"exact"},{"name":"regulation of frizzled signaling pathway involved in DA neurogenesis from midbrain floor plate","type":"exact"},{"name":"regulation of frizzled signaling pathway involved in mDA neuron differentiation","type":"exact"},{"name":"regulation of frizzled signaling pathway involved in midbrain DA neurogenesis","type":"exact"},{"name":"regulation of frizzled signaling pathway involved in midbrain dopaminergic neuron differentiation","type":"exact"},{"name":"regulation of frizzled signaling pathway involved in midbrain dopaminergic neuron production","type":"exact"},{"name":"regulation of frizzled signalling pathway involved in DA neurogenesis from midbrain floor plate","type":"exact"},{"name":"regulation of frizzled signalling pathway involved in mDA neuron differentiation","type":"exact"},{"name":"regulation of frizzled signalling pathway involved in midbrain DA neurogenesis","type":"exact"},{"name":"regulation of frizzled signalling pathway involved in midbrain dopaminergic neuron differentiation","type":"exact"},{"name":"regulation of frizzled signalling pathway involved in midbrain dopaminergic neuron production","type":"exact"},{"name":"regulation of midbrain dopaminergic neuron differentiation by regulation of Wnt signaling","type":"related"}],"termid":"GO:1905424"}


id: GO:0043280
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the activity of a cysteine-type endopeptidase involved in the apoptotic process.","definition_xrefs":["GOC:mtg_apoptosis","GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of cysteine-type endopeptidase activity involved in apoptotic process (obsolete GO:0043280)","synonyms":[{"name":"activation of caspase activity","type":"narrow"},{"name":"positive regulation of caspase activity","type":"broad"},{"name":"stimulation of caspase activity","type":"narrow"},{"name":"up regulation of caspase activity","type":"exact"},{"name":"up-regulation of caspase activity","type":"exact"},{"name":"upregulation of caspase activity","type":"exact"}],"termid":"GO:0043280"}


id: PBO:0041891
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"catsper channel auxiliary subunit zeta","termid":"PBO:0041891"}


id: MONDO:0010336
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Oral-facial-digital syndrome, type 8 is characterized by tongue lobulation, hypoplasia of the epiglottis, median cleft upper lip, broad or bifid nasal tip, hypertelorism or telecanthus, bilateral preaxial and postaxial polydactyly, abnormal tibiae and/or radii, duplication of the halluces, short stature, and mild intellectual deficit.","definition_xrefs":["Orphanet:2755"],"direct_ancestors":[{"relation_name":"is_a","term_name":"orofaciodigital syndrome","termid":"MONDO:0015375"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"orofaciodigital syndrome VIII","secondary_identifiers":["UMLS:C0796101","GARD:4060","MESH:C557820","MEDGEN:208667","OMIM:300484","DOID:0060378","SCTID:722106001"],"synonyms":[{"name":"OFD syndrome 8","type":"related"},{"name":"OFD8","type":"exact"},{"name":"Ofds 8","type":"related"},{"name":"oral facial digital syndrome 8","type":"related"},{"name":"oral facial digital syndrome type 8","type":"related"},{"name":"oral-Facial-digital syndrome with hypoplastic Epiglottis","type":"related"},{"name":"oral-Facial-digital syndrome, type 8","type":"related"},{"name":"oral-facial-digital syndrome type 8","type":"exact"},{"name":"oral-facial-digital syndrome, Edwards type","type":"exact"},{"name":"orofaciodigital syndrome 8","type":"related"},{"name":"orofaciodigital syndrome VIII","type":"exact"},{"name":"orofaciodigital syndrome VIII, X-linked recessive","type":"exact"},{"name":"orofaciodigital syndrome type 8","type":"related"},{"name":"orofaciodigital syndrome type VIII","type":"exact"},{"name":"orofaciodigital syndrome, Edwards type","type":"exact"}],"termid":"MONDO:0010336","xrefs":{"Monarch":{"xref_id":"0010336"}}}


id: PBO:0087346
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sphingoid long-chain base kinase; responsible for synthesis of long-chain base phosphates, which function as signaling molecules, regulates synthesis of ceramide from exogenous long-chain bases, localizes to the Golgi and late endosomes; LCB4 has a paralog, LCB5, that arose from the whole genome duplication","termid":"PBO:0087346"}


id: MONDO:0858974
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A syndrome that is characterized by fatigue, problems with memory or concentration, joint and muscle pain, hair loss, weight changes and anxiety/depression. This syndrome may be related to breast implants","definition_xrefs":["PMID:35510012","DOID:0081323"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"breast disorder","termid":"MONDO:0002657"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"breast implant illness","termid":"MONDO:0858974","xrefs":{"Monarch":{"xref_id":"0858974"}}}


id: MONDO:0018800
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Kallmann syndrome (KS) is a developmental genetic disorder characterized by the association of congenital hypogonadotropic hypogonadism (CHH) due to gonadotropin-releasing hormone (GnRH) deficiency, and anosmia or hyposmia (with hypoplasia or aplasia of the olfactory bulbs).","definition_xrefs":["Orphanet:478"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hypogonadotropic hypogonadism","termid":"MONDO:0018555"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Kallmann syndrome","secondary_identifiers":["MedDRA:10053142","SCTID:93559003","MEDGEN:102469","ICD9:253.4","UMLS:C0162809","NANDO:2200381","NCIT:C75479","DOID:3614","MESH:D017436","ICD10CM:E23.0","NORD:1319","GARD:10771"],"synonyms":[{"name":"Kallman syndrome","type":"exact"},{"name":"Kallman's syndrome","type":"exact"},{"name":"Olfacto-genital pathological sequence","type":"exact"},{"name":"congenital hypogonadotropic hypogonadism with anosmia","type":"exact"},{"name":"familial hypogonadism with anosmia","type":"exact"},{"name":"hypogonadism with anosmia","type":"exact"},{"name":"hypogonadotropic hypogonadism with anosmia","type":"exact"}],"termid":"MONDO:0018800","xrefs":{"Monarch":{"xref_id":"0018800"}}}


id: PBO:0082516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Catalytic subunit of the NatC type N-terminal acetyltransferase (NAT); involved in subcellular targeting of select N-terminally acetylated substrates to the Golgi apparatus (Arl3p and Grh1p) and the inner nuclear membrane (Trm1p); required for replication of dsRNA virus; human NatC ortholog, NAA30, functionally complements the null, requiring either auxiliary subunit Mak10p or co-expression of human ortholog, NAA35; NAA60, the human NatF gene, also complements the null allele","termid":"PBO:0082516"}


id: PBO:0077116
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TIMM23B-AGAP6 readthrough (NMD candidate)","termid":"PBO:0077116"}


id: PBO:0031706
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_necrotic_cell_death_(obsolete_FYPO:0000504)","termid":"PBO:0031706"}


id: PBO:0080534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WASH complex subunit 5","termid":"PBO:0080534"}


id: PBO:0109395
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed transcript, Y-linked 23","termid":"PBO:0109395"}


id: GO:0110092
data:
  {"annotated_genes":["SJAG_01777","SJAG_00140","SJAG_05260","SJAG_03092","SJAG_02246","SJAG_03287","SJAG_01370","SJAG_00113"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[87714,90084,91316,95531,97900,100179,100245,105427],"is_not":false,"summary":null,"term":"GO:0110092"}]},"cv_name":"cellular_component","definition":"The area of a motile nucleus closest to the direction of movement.","definition_xrefs":["PMID:24335254","GOC:mah","PMID:15030757","GOC:al","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"nucleus","termid":"GO:0005634"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00113":null,"SJAG_00140":null,"SJAG_01370":null,"SJAG_01777":null,"SJAG_02246":null,"SJAG_03092":null,"SJAG_03287":null,"SJAG_05260":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005634","GO:0005575"],"is_obsolete":false,"name":"nucleus leading edge","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"horsetail nucleus leading edge","type":"narrow"}],"termid":"GO:0110092","terms_by_termid":{"GO:0110092":null}}


id: FYPO:0004254
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular response phenotype observed in the vegetative growth phase of the life cycle in which the regulation of the mitotic cell cycle in response to ultraviolet light (UV) is abnormal. Normally, cell cycle progression is slowed or arrested transiently following exposure to UV. The most common abnormality is for the cell cycle to progress as in the absence of UV exposure.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal regulation of mitotic cell cycle","termid":"FYPO:0000148"},{"relation_name":"is_a","term_name":"abnormal cellular process during vegetative growth","termid":"FYPO:0001362"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abnormal mitotic cell cycle regulation during cellular response to UV","synonyms":[{"name":"abnormal cell cycle regulation during cellular response to UV","type":"exact"},{"name":"abnormal cell cycle regulation during cellular response to UV during mitotic cell cycle","type":"exact"},{"name":"abnormal mitotic cell cycle delay following UV exposure","type":"exact"},{"name":"abnormal mitotic cell cycle regulation during cellular response to UV during vegetative growth","type":"exact"},{"name":"abnormal mitotic cell cycle regulation during cellular response to ultraviolet light","type":"exact"},{"name":"abnormal mitotic cell cycle regulation in response to UV","type":"exact"}],"termid":"FYPO:0004254"}


id: GO:0051881
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the establishment or extent of the mitochondrial membrane potential, the electric potential existing across the mitochondrial membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of membrane potential","termid":"GO:0042391"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of mitochondrial membrane potential","termid":"GO:0051881"}


id: PBO:0087852
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcriptional activator; binds specific gene recruitment sequences and is required for DNA zip code-mediated targeting of genes to nuclear periphery; regulates proline utilization genes, constitutively binds PUT1 and PUT2 promoters as a dimer, undergoes conformational change to form active state; binds other promoters only under activating conditions; differentially phosphorylated in presence of different nitrogen sources; has a Zn(2)-Cys(6) binuclear cluster domain","termid":"PBO:0087852"}


id: PBO:0084283
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Integral membrane protein required for efficient mating; may participate in or regulate the low affinity Ca2+ influx system, which affects intracellular signaling and cell-cell fusion during mating","termid":"PBO:0084283"}


id: GO:0098621
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: O-phosphoseryl-tRNA(Sec) + selenophosphoric acid + H2O => L-selenocysteinyl-tRNA(Sec) + 2 phosphoric acid.","definition_xrefs":["PMID:19608919","RHEA:25041","PMID:17142313"],"direct_ancestors":[{"relation_name":"is_a","term_name":"selenotransferase activity","termid":"GO:0016785"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a tRNA","termid":"GO:0140101"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0140098","GO:0140101","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"O-phosphoseryl-tRNA(Sec) selenium transferase activity","secondary_identifiers":["EC:2.9.1.2","Reactome:R-HSA-2408555"],"synonyms":[{"name":"O-phospho-L-seryl-tRNA(Sec):L-selenocysteinyl-tRNA synthase","type":"exact"},{"name":"O-phosphoseryl-tRNA:selenocysteinyl-tRNA synthase","type":"exact"},{"name":"SepSecS","type":"exact"},{"name":"phosphoseryl-selenocysteinyl-tRNA selenium transferase activity","type":"exact"}],"termid":"GO:0098621"}


id: PBO:0062530
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 8 subfamily V member 1 pseudogene","termid":"PBO:0062530"}


id: PBO:0041288
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement C1r","termid":"PBO:0041288"}


id: PBO:0077191
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell leukemia homeobox 2","termid":"PBO:0077191"}


id: MONDO:0001270
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"bladder calculus","termid":"MONDO:0006678"},{"relation_name":"is_a","term_name":"bladder diverticulum","termid":"MONDO:0007197"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stone in bladder diverticulum","secondary_identifiers":["DOID:11354","SCTID:18109005","ICD9:594.0","MEDGEN:510220","UMLS:C0156265"],"synonyms":[{"name":"calculus in diverticulum of bladder","type":"exact"}],"termid":"MONDO:0001270","xrefs":{"Monarch":{"xref_id":"0001270"}}}


id: MONDO:0018260
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"melanocytic nevus","termid":"MONDO:0005073"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"scalp syndrome","secondary_identifiers":["UMLS:C4751599","Orphanet:370052","MEDGEN:1665599","GARD:21592"],"synonyms":[{"name":"sebaceous nevus-CNS malformations-aplasia cutis congenital-limbal dermoid-pigmented nevus syndrome","type":"exact"},{"name":"sebaceous nevus-central nervous system malformations-aplasia cutis congenital-limbal dermoid-pigmented nevus syndrome","type":"exact"}],"termid":"MONDO:0018260","xrefs":{"Monarch":{"xref_id":"0018260"}}}


id: GO:0001062
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template that contains a plastid PEP-A RNA polymerase II specific promoter to direct initiation and catalyses DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.","definition_xrefs":["PMID:20701995","GOC:txnOH"],"gene_count":0,"genotype_count":0,"name":"obsolete plastid PEP-A RNA polymerase activity (obsolete GO:0001062)","termid":"GO:0001062"}


id: PR:P78750
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- utp18 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P78750"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 small nucleolar RNA-associated protein 18 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC29A3.06","synonyms":[{"name":"Spom972h-utp18","type":"exact"},{"name":"U3 snoRNA-associated protein 18 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P78750"}


id: PBO:0036435
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA repair protein, SUMO-related Rad60","termid":"PBO:0036435"}


id: MONDO:0005107
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete hepatocellular adenoma (obsolete MONDO:0005107)","termid":"MONDO:0005107","xrefs":{"Monarch":{"xref_id":"0005107"}}}


id: MONDO:0012774
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"15q13.3 microdeletion (microdel15q13.3) syndrome is characterized by a wide spectrum of neurodevelopmental disorders with no or subtle dysmorphic features.","definition_xrefs":["Orphanet:199318"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"excluded_subClassOf","term_name":"epilepsy","termid":"MONDO:0005027"},{"relation_name":"is_a","term_name":"congenital nervous system disorder","termid":"MONDO:0002320"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"},{"relation_name":"is_a","term_name":"partial deletion of the long arm of chromosome 15","termid":"MONDO:0016913"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"chromosome 15q13.3 microdeletion syndrome","secondary_identifiers":["OMIM:612001","DECIPHER:74","GARD:10296","MEDGEN:393784","SCTID:699254009","DOID:0060394","UMLS:C2677613","MESH:C567439"],"synonyms":[{"name":"15q13.3 microdeletion","type":"related"},{"name":"15q13.3 microdeletion syndrome","type":"exact"},{"name":"Del(15)(q13.3)","type":"exact"},{"name":"chromosome 15q13.3 deletion syndrome","type":"related"},{"name":"chromosome 15q13.3 microdeletion syndrome","type":"exact"},{"name":"microdeletion 15q13.3 syndrome","type":"related"},{"name":"monosomy 15q13.3","type":"exact"}],"termid":"MONDO:0012774","xrefs":{"Monarch":{"xref_id":"0012774"}}}


id: SO:0002382
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A conserved cis-acting element that confers extreme-distance regulatory activity to an enhancer.","direct_ancestors":[{"relation_name":"is_a","term_name":"transcriptional_cis_regulatory_region","termid":"SO:0001055"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"range_extender_element","synonyms":[{"name":"REX","type":"exact"}],"termid":"SO:0002382"}


id: GO:0019404
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of galactitol, the hexitol derived by the reduction of the aldehyde group of either D- or L-galactose.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"galactitol metabolic process","termid":"GO:0019402"},{"relation_name":"is_a","term_name":"hexitol catabolic process","termid":"GO:0019407"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975","GO:0044281"],"is_obsolete":false,"name":"galactitol catabolic process","secondary_identifiers":["MetaCyc:GALACTITOLCAT-PWY"],"synonyms":[{"name":"galactitol breakdown","type":"exact"},{"name":"galactitol catabolism","type":"exact"},{"name":"galactitol degradation","type":"exact"}],"termid":"GO:0019404"}


id: GO:0015680
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process that contributes to the delivery of copper ions to a target protein.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete protein maturation by copper ion transfer (obsolete GO:0015680)","synonyms":[{"name":"intracellular copper delivery","type":"exact"},{"name":"intracellular copper ion delivery","type":"related"},{"name":"intracellular copper ion transport","type":"broad"}],"termid":"GO:0015680"}


id: MONDO:0030604
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A variant of Wilms tumor of the kidney characterized by the presence of cystic spaces separated by septa. The septa contain immature epithelial cells, immature stromal cells, and blastema cells. Surgical resection is usually curative.","definition_xrefs":["NCIT:C6897"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"kidney cancer","termid":"MONDO:0002367"},{"relation_name":"is_a","term_name":"childhood multilocular cystic kidney neoplasm","termid":"MONDO:0004356"},{"relation_name":"is_a","term_name":"childhood kidney Wilms tumor","termid":"MONDO:0024676"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0005240","MONDO:0004992"],"is_obsolete":false,"name":"cystic partially differentiated nephroblastoma","secondary_identifiers":["MEDGEN:220423","ICDO:8959/1","DOID:7571","ICDO:8959/3","UMLS:C1266139"],"synonyms":[{"name":"cystic partially differentiated nephroblastoma","type":"exact"},{"name":"malignant cystic nephroma","type":"exact"},{"name":"malignant multilocular cystic nephroma","type":"exact"}],"termid":"MONDO:0030604","xrefs":{"Monarch":{"xref_id":"0030604"}}}


id: GO:2000581
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of ATP-dependent microtubule motor activity, plus-end-directed.","definition_xrefs":["GOC:vw","GOC:kmv"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of microtubule motor activity, plus-end-directed (obsolete GO:2000581)","synonyms":[{"name":"negative regulation of ATP-dependent microtubule motor activity, plus-end-directed","type":"exact"},{"name":"negative regulation of kinesin ATP phosphohydrolase (plus-end-directed)","type":"exact"},{"name":"negative regulation of kinesin activity","type":"related"},{"name":"negative regulation of plus-end-directed kinesin ATPase activity","type":"exact"},{"name":"negative regulation of plus-end-directed microtubule motor activity","type":"broad"}],"termid":"GO:2000581"}


id: PR:Q01682
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pho4 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q01682"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thiamine-repressible acid phosphatase pho4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC428.03c","synonyms":[{"name":"Spom972h-pho4","type":"exact"}],"termid":"PR:Q01682"}


id: GO:1905692
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The disaggregation of an endoplasmic reticulum into its constituent components.","definition_xrefs":["GOC:autophagy","GOC:pr","GO_REF:0000079","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endoplasmic reticulum organization","termid":"GO:0007029"},{"relation_name":"is_a","term_name":"organelle disassembly","termid":"GO:1903008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endoplasmic reticulum disassembly","synonyms":[{"name":"ER disassembly","type":"exact"}],"termid":"GO:1905692"}


id: MONDO:0016655
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"6p22 microdeletion syndrome is a newly described syndrome associated with a variable clinical phenotype including developmental delay, facial dysmorphism, short neck and diverse malformations.","definition_xrefs":["Orphanet:251046"],"direct_ancestors":[{"relation_name":"is_a","term_name":"partial deletion of the short arm of chromosome 6","termid":"MONDO:0016888"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6p22 microdeletion syndrome","secondary_identifiers":["SCTID:719662000","GARD:20691","UMLS:C4304528","MEDGEN:930197"],"synonyms":[{"name":"Del(6)(p22)","type":"exact"},{"name":"monosomy 6p22","type":"exact"}],"termid":"MONDO:0016655","xrefs":{"Monarch":{"xref_id":"0016655"}}}


id: FYPO:0007592
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which mitophagy, i.e. autophagic degradation of the mitochondria, is normal (i.e. indistinguishable from wild type) when the cell is subject to nitrogen starvation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal mitophagy","termid":"FYPO:0007591"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal mitophagy during nitrogen starvation","synonyms":[{"name":"normal autophagy of mitochondrion during nitrogen depletion","type":"exact"},{"name":"normal autophagy of mitochondrion during nitrogen deprivation","type":"exact"},{"name":"normal autophagy of mitochondrion during nitrogen starvation","type":"exact"}],"termid":"FYPO:0007592"}


id: GO:0042799
data:
  {"annotated_genes":["SJAG_01146"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[117348],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140943"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + histone H4 L-lysine (position 20) = S-adenosyl-L-homocysteine + histone H4 N6-methyl-L-lysine (position 20). This reaction is the addition of a methyl group to the lysine residue at position 20 of the histone H4 protein.","definition_xrefs":["PMID:12086618"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-lysine N-methyltransferase activity","termid":"GO:0016279"},{"relation_name":"is_a","term_name":"histone H4 methyltransferase activity","termid":"GO:0140939"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01146":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0008276"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0140096","GO:0016740","GO:0008276","GO:0003674","GO:0016741"],"is_obsolete":false,"name":"histone H4K20 methyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-2301205","Reactome:R-HSA-5682965"],"synonyms":[{"name":"histone H4 lysine 20-specific methyltransferase activity","type":"exact"},{"name":"histone H4K20 methylase activity","type":"broad"},{"name":"histone H4K20 methylation","type":"exact"},{"name":"histone lysine N-methyltransferase activity (H4-K20 specific)","type":"exact"},{"name":"histone methylase activity (H4-K20 specific)","type":"exact"},{"name":"histone methyltransferase activity (H4-K20 specific)","type":"exact"},{"name":"histone-H4K20 methyltransferase activity","type":"exact"}],"termid":"GO:0042799","terms_by_termid":{"GO:0140943":null}}


id: PBO:0076764
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tudor domain containing 1","termid":"PBO:0076764"}


id: PBO:0049426
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GUSB pseudogene 3","termid":"PBO:0049426"}


id: PBO:0083180
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; completely overlaps the dubious ORF YIL100C-A","termid":"PBO:0083180"}


id: PBO:0003708
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dolichol-phosphate mannosyltransferase subunit 2 (predicted)","termid":"PBO:0003708"}


id: PR:000028932
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- tpx1 gene or a 1:1 ortholog thereof.","definition_xrefs":["PRO:CNA","PMID:22245228"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxiredoxin tpx1","synonyms":[{"name":"Peroxiredoxin tsa1","type":"exact"},{"name":"TPX1","type":"related"},{"name":"TSA1","type":"related"},{"name":"Thioredoxin peroxidase","type":"exact"},{"name":"tpx1","type":"exact"}],"termid":"PR:000028932"}


id: PBO:0081711
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 630","termid":"PBO:0081711"}


id: PBO:0067412
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 523, pseudogene","termid":"PBO:0067412"}


id: PBO:0081138
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZFP36 ring finger protein like 1","termid":"PBO:0081138"}


id: PBO:0052299
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KH RNA binding domain containing, signal transduction associated 3","termid":"PBO:0052299"}


id: PBO:0082570
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Checkpoint protein; involved in the activation of the DNA damage and meiotic pachytene checkpoints; with Mec3p and Ddc1p, forms a clamp that is loaded onto partial duplex DNA; homolog of human and S. pombe Rad1 and U. maydis Rec1 proteins","termid":"PBO:0082570"}


id: MONDO:0014771
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Joubert syndrome in which the cause of the disease is a mutation in the KIAA0556 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Joubert syndrome","termid":"MONDO:0018772"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Joubert syndrome 26","secondary_identifiers":["GARD:16160","UMLS:C4084843","OMIM:616784","MEDGEN:900415","DOID:0110995"],"synonyms":[{"name":"JBTS26","type":"exact"},{"name":"Joubert syndrome 26","type":"exact"},{"name":"Joubert syndrome caused by mutation in KIAA0556","type":"exact"},{"name":"Joubert syndrome type 26","type":"exact"},{"name":"KIAA0556 Joubert syndrome","type":"exact"}],"termid":"MONDO:0014771","xrefs":{"Monarch":{"xref_id":"0014771"}}}


id: PBO:0043612
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COMM domain containing 4","termid":"PBO:0043612"}


id: GO:0001304
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process that results in changes in chromatin structure contributing to replicative cell aging.","definition_xrefs":["GOC:jh","GOC:tb","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete progressive alteration of chromatin involved in replicative cell aging (obsolete GO:0001304)","synonyms":[{"name":"progressive alteration of chromatin during replicative cell ageing","type":"exact"},{"name":"progressive alteration of chromatin during replicative cell aging","type":"related"}],"termid":"GO:0001304"}


id: PBO:0042094
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 166","termid":"PBO:0042094"}


id: PBO:0004926
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetra spanning protein 1, Tts1","termid":"PBO:0004926"}


id: MONDO:0008755
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A Mendelian disease characterized by congenital alopecia, early-onset epilepsy, intellectual disability and speech delay. Large stature, delayed bone development and abnormal electroencephalogram have also been associated.","definition_xrefs":["Orphanet:2574"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"excluded_subClassOf","term_name":"epilepsy syndrome","termid":"MONDO:0015650"},{"relation_name":"excluded_subClassOf","term_name":"hyperpigmentation of the skin","termid":"MONDO:0019289"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Moynahan syndrome","secondary_identifiers":["MESH:C537052","GARD:606","MEDGEN:120535","OMIM:203600","UMLS:C0265328"],"synonyms":[{"name":"Moynahan alopecia syndrome","type":"related"},{"name":"alopecia epilepsy oligophrenia syndrome of Moynahan","type":"related"},{"name":"alopecia-epilepsy-intellectual disability syndrome, Moynahan type","type":"exact"},{"name":"alopecia-epilepsy-oligophrenia syndrome of Moynahan","type":"related"}],"termid":"MONDO:0008755","xrefs":{"Monarch":{"xref_id":"0008755"}}}


id: MONDO:0012248
data:
  {"annotated_genes":["SJAG_01491"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85524],"is_not":false,"summary":null,"term":"MONDO:0012248"}]},"cv_name":"mondo","definition":"Autosomal recessive limb-girdle muscular dystrophy type 2K (LGMD2K) is a form of limb-girdle muscular dystrophy characterized by the onset of slowly progressive proximal muscle weakness during childhood (with fatigue and difficulty running and climbing stairs) and developmental delay. Mild intellectual deficit and microcephaly, without any obvious structural brain abnormality, are found in all patients. Mild pseudohypertrophy and joint contractures of the ankles have also been reported.","definition_xrefs":["Orphanet:86812"],"direct_ancestors":[{"relation_name":"is_a","term_name":"muscular dystrophy-dystroglycanopathy, type C","termid":"MONDO:0000173"},{"relation_name":"is_a","term_name":"autosomal recessive limb-girdle muscular dystrophy","termid":"MONDO:0015152"},{"relation_name":"is_a","term_name":"qualitative or quantitative defects of protein O-mannosyltransferase 1","termid":"MONDO:0016184"},{"relation_name":"is_a","term_name":"myopathy caused by variation in POMT1","termid":"MONDO:0700070"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01491":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0024322"},{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0005336","MONDO:0005066","MONDO:0002320","MONDO:0024322","MONDO:0006025"],"is_obsolete":false,"name":"autosomal recessive limb-girdle muscular dystrophy type 2K","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["NCIT:C133730","OMIM:609308","UMLS:C1836373","SCTID:720523006","GARD:12535","MEDGEN:332193","DOID:0110297"],"synonyms":[{"name":"LGMD-POMT1 related","type":"exact"},{"name":"LGMD2K","type":"exact"},{"name":"MDDGC1","type":"exact"},{"name":"POMT1 autosomal recessive limb-girdle muscular dystrophy","type":"exact"},{"name":"autosomal recessive limb-girdle muscular dystrophy caused by mutation in POMT1","type":"exact"},{"name":"limb-girdle muscular dystrophy - intellectual disability","type":"related"},{"name":"limb-girdle muscular dystrophy type 2K","type":"related"},{"name":"limb-girdle muscular dystrophy-intellectual disability syndrome","type":"exact"},{"name":"muscular dystrophy limb-girdle type 2K","type":"exact"},{"name":"muscular dystrophy, limb-girdle, type 2K","type":"related"},{"name":"muscular dystrophy-dystroglycanopathy (Limb-girdle) type C, 1","type":"exact"},{"name":"muscular dystrophy-dystroglycanopathy (limb-girdle) type C 1","type":"exact"},{"name":"muscular dystrophy-dystroglycanopathy (limb-girdle), type C, 1","type":"related"}],"termid":"MONDO:0012248","terms_by_termid":{"MONDO:0012248":null},"xrefs":{"Monarch":{"xref_id":"0012248"}}}


id: PBO:0071003
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 5","termid":"PBO:0071003"}


id: GO:0004112
data:
  {"annotated_genes":["SJAG_00956","SJAG_02481","SJAG_01428"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[90970,101378],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004113"},{"annotations":[79261],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004115"},{"annotations":[79263],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0047555"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a nucleoside cyclic phosphate + H2O = a nucleoside phosphate.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphoric diester hydrolase activity","termid":"GO:0008081"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00956":null,"SJAG_01428":null,"SJAG_02481":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0003824","GO:0016788"],"is_obsolete":false,"name":"cyclic-nucleotide phosphodiesterase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0004112","terms_by_termid":{"GO:0004113":null,"GO:0004115":null,"GO:0047555":null}}


id: PBO:0053075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LBX1 antisense RNA 1","termid":"PBO:0053075"}


id: MONDO:0030529
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An agammaglobulinemia characterized by early-childhood onset of recurrent viral and bacterial infections affecting various organ systems, particularly the sinopulmonary system. Laboratory studies show low or absent circulating B cells and hypo- or agammaglobulinemia. Affected individuals may have adverse reactions to certain vaccinations, such as the polio vaccine. Treatment with replacement Ig is effective; hematopoietic stem cell transplantation has also been reported.","definition_xrefs":["OMIM:619707"],"direct_ancestors":[{"relation_name":"is_a","term_name":"agammaglobulinemia","termid":"MONDO:0015977"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"agammaglobulinemia 10, autosomal dominant","secondary_identifiers":["UMLS:C5676900","DOID:0081142","MEDGEN:1806624"],"synonyms":[{"name":"AGM10","type":"exact"}],"termid":"MONDO:0030529","xrefs":{"Monarch":{"xref_id":"0030529"}}}


id: MONDO:0012481
data:
  {"annotated_genes":["SJAG_01474","SJAG_04865"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85399,85400],"is_not":false,"summary":null,"term":"MONDO:0012481"}]},"cv_name":"mondo","definition":"Mevalonic aciduria (MVA) is a rare, very severe form of mevalonate kinase deficiency (MKD) characterized by dysmorphic features, failure to thrive, psychomotor delay, ocular involvement, hypotonia, progressive ataxia, myopathy, and recurrent inflammatory episodes.","definition_xrefs":["Orphanet:29"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"peroxisomal disease","termid":"MONDO:0019053"},{"relation_name":"is_a","term_name":"eye disorder","termid":"MONDO:0005328"},{"relation_name":"is_a","term_name":"mevalonate kinase deficiency","termid":"MONDO:0017708"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01474":null,"SJAG_04865":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0002525","MONDO:0005066","MONDO:0005328"],"is_obsolete":false,"name":"mevalonic aciduria","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C1959626","SCTID:718558008","DOID:0050452","MedDRA:10072219","MEDGEN:368373","icd11.foundation:572875152","NCIT:C84890","OMIM:610377","NANDO:1200866","GARD:3588"],"synonyms":[{"name":"HIDS","type":"exact"},{"name":"MEVA","type":"related"},{"name":"MKD","type":"exact"},{"name":"MVA","type":"exact"},{"name":"Mevalonicaciduria","type":"related"},{"name":"complete mevalonate kinase deficiency","type":"exact"},{"name":"hyperimmunoglobulin D with periodic fever syndrome","type":"exact"},{"name":"mevalonic aciduria","type":"exact"}],"termid":"MONDO:0012481","terms_by_termid":{"MONDO:0012481":null},"xrefs":{"Monarch":{"xref_id":"0012481"}}}


