# terms

id: CHEBI:22986
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium ionophore","termid":"CHEBI:22986"}


id: PBO:0036395
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat protein, human MAPK organizer 1 (MORG1) family Wdr83 (predicted)","termid":"PBO:0036395"}


id: PBO:0079077
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-iMet (anticodon CAT) 1-5","termid":"PBO:0079077"}


id: MONDO:0033281
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any polycystic kidney disease in which the cause of the disease is a mutation in the DZIP1L gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"autosomal dominant polycystic kidney disease","termid":"MONDO:0004691"},{"relation_name":"is_a","term_name":"autosomal recessive polycystic kidney disease","termid":"MONDO:0009889"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0005240"],"is_obsolete":false,"name":"polycystic kidney disease 5","secondary_identifiers":["DOID:0080273","UMLS:C4539903","GARD:16242","OMIM:617610","MEDGEN:1624679"],"synonyms":[{"name":"DZIP1L polycystic kidney disease","type":"exact"},{"name":"PKD5","type":"related"},{"name":"polycystic kidney disease 5","type":"exact"},{"name":"polycystic kidney disease caused by mutation in DZIP1L","type":"exact"}],"termid":"MONDO:0033281","xrefs":{"Monarch":{"xref_id":"0033281"}}}


id: PBO:0061735
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoredoxin like 2","termid":"PBO:0061735"}


id: PBO:0043290
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-type lectin domain containing 9A","termid":"PBO:0043290"}


id: FYPO:0004988
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A gene expression phenotype in which RNA levels that normally vary over the course of the mitotic cell cycle do not vary, or change in a pattern different from normal. Total RNA or a specific RNA, such as the mRNA transcribed from a gene of interest, may be affected.","definition_xrefs":["PomBase:mah","PMID:15302827"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gene expression regulation phenotype during vegetative growth","termid":"FYPO:0001333"},{"relation_name":"is_a","term_name":"abnormal gene expression","termid":"FYPO:0006551"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0006551","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"abnormal RNA level oscillation during mitotic cell cycle","synonyms":[{"name":"abnormal RNA level fluctuation during mitotic cell cycle","type":"exact"},{"name":"abnormal periodic expression of RNA during mitotic cell cycle","type":"exact"},{"name":"abnormal transcript level oscillation during mitotic cell cycle","type":"exact"}],"termid":"FYPO:0004988"}


id: PBO:0004620
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor Thi5","termid":"PBO:0004620"}


id: PBO:0053221
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich glioma inactivated 1","termid":"PBO:0053221"}


id: GO:0034442
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of lipoprotein oxidation.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of lipoprotein metabolic process","termid":"GO:0050746"},{"relation_name":"regulates","term_name":"lipoprotein oxidation","termid":"GO:0042161"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of lipoprotein oxidation","termid":"GO:0034442"}


id: MONDO:0021048
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A localized mast cell neoplasm without metastatic potential.","definition_xrefs":["NCIT:C3217"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mastocytoma","termid":"MONDO:0003079"},{"relation_name":"is_a","term_name":"benign neoplasm","termid":"MONDO:0005165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"benign mastocytoma","secondary_identifiers":["DOID:4658","UMLS:C2242987","MEDGEN:384518"],"synonyms":[{"name":"MAST cell tumor, benign","type":"exact"},{"name":"benign mastocytoma","type":"exact"},{"name":"mastocytoma, benign","type":"exact"}],"termid":"MONDO:0021048","xrefs":{"Monarch":{"xref_id":"0021048"}}}


id: MONDO:0014793
data:
  {"annotated_genes":["SJAG_03018"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86114],"is_not":false,"summary":null,"term":"MONDO:0014793"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"epidermal disease","termid":"MONDO:0019268"},{"relation_name":"is_a","term_name":"sterol biosynthesis disorder","termid":"MONDO:0019240"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03018":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002525"}],"interesting_parent_ids":["MONDO:0002525","MONDO:0005066"],"is_obsolete":false,"name":"microcephaly-congenital cataract-psoriasiform dermatitis syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1798933","GARD:17886","OMIM:616834","UMLS:C5567510","Orphanet:488168"],"synonyms":[{"name":"MCCPD","type":"exact"},{"name":"Sc4Mol deficiency","type":"related"},{"name":"microcephaly, congenital cataract, and psoriasiform dermatitis","type":"exact"},{"name":"smo deficiency","type":"exact"},{"name":"sterol-C4-methyl oxidase deficiency","type":"exact"}],"termid":"MONDO:0014793","terms_by_termid":{"MONDO:0014793":null},"xrefs":{"Monarch":{"xref_id":"0014793"}}}


id: PBO:0112695
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane phosphate exporter Spx2/Xpr1","termid":"PBO:0112695"}


id: MONDO:1012473
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"medial coronoid disease, non-human animal","termid":"MONDO:1011771"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"medial coronoid disease, dog","secondary_identifiers":["OMIA:001863-9615"],"termid":"MONDO:1012473","xrefs":{"Monarch":{"xref_id":"1012473"}}}


id: PBO:0056915
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MINDY lysine 48 deubiquitinase 1","termid":"PBO:0056915"}


id: GO:0019332
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The oxidation of nitrite (NO2) to nitrate (NO3), using oxygen (O2) as the electron acceptor. Nitrite oxidation is the final step in nitrification, the oxidation of ammonia to nitrate, and nitrite oxidoreductase (NOR) is the key enzyme complex that catalyzes the conversion of nitrite to nitrate in nitrite oxidizing species.","definition_xrefs":["MetaCyc:P282-PWY"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aerobic respiration","termid":"GO:0009060"},{"relation_name":"is_a","term_name":"energy derivation by oxidation of reduced inorganic compounds","termid":"GO:0015975"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006091","GO:0008150"],"is_obsolete":false,"name":"aerobic respiration, using nitrite as electron donor","synonyms":[{"name":"nitrite oxidation","type":"broad"}],"termid":"GO:0019332"}


id: GO:0017150
data:
  {"annotated_genes":["SJAG_01041","SJAG_00174","SJAG_03236","SJAG_03240"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[109958],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0102262"},{"annotations":[109959],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0102263"},{"annotations":[105016],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0102264"},{"annotations":[118753],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0102266"},{"annotations":[118754],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0102267"},{"annotations":[66141],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0102265"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a 5,6-dihydrouridine in tRNA + NAD(P)+ = a uridine in tRNA + H+ + NAD(P)H.","definition_xrefs":["PMID:11983710","PMID:22123979"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA dihydrouridine synthase activity","termid":"GO:0106413"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a tRNA","termid":"GO:0140101"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00174":null,"SJAG_01041":null,"SJAG_03236":null,"SJAG_03240":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824","GO:0140098","GO:0140101"],"is_obsolete":false,"name":"tRNA dihydrouridine synthase activity","references_by_uniquename":{"GO_REF:0000003":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-6782296"],"termid":"GO:0017150","terms_by_termid":{"GO:0102262":null,"GO:0102263":null,"GO:0102264":null,"GO:0102265":null,"GO:0102266":null,"GO:0102267":null}}


id: FYPO:0008052
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in mitosis in which the dimethylation of lysine at position 4 of histone H3 occurs to a greater extent than normal.","direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H3-K4 dimethylation during vegetative growth","termid":"FYPO:0005225"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0002274","FYPO:0000002","FYPO:0002494","FYPO:0005447"],"is_obsolete":false,"name":"increased histone H3-K4 dimethylation during mitosis","termid":"FYPO:0008052"}


id: PBO:0082075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5'-3' exonuclease and flap-endonuclease; involved in recombination, double-strand break repair, MMS2 error-free branch of the post replication (PRR) pathway and DNA mismatch repair; role in telomere maintenance; member of the Rad2p nuclease family, with conserved N and I nuclease domains; relative distribution to the nucleus increases upon DNA replication stress; EXO1 has a paralog, DIN7, that arose from the whole genome duplication","termid":"PBO:0082075"}


id: GO:0008292
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of acetylcholine, the acetic acid ester of the organic base choline.","definition_xrefs":["GOC:jl","ISBN:0192800752"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylcholine metabolic process","termid":"GO:0008291"},{"relation_name":"is_a","term_name":"acetate ester biosynthetic process","termid":"GO:1900620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"acetylcholine biosynthetic process","synonyms":[{"name":"acetylcholine anabolism","type":"exact"},{"name":"acetylcholine biosynthesis","type":"exact"},{"name":"acetylcholine formation","type":"exact"},{"name":"acetylcholine synthesis","type":"exact"}],"termid":"GO:0008292"}


id: PBO:0046225
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongin C pseudogene 18","termid":"PBO:0046225"}


id: PBO:0111893
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PAC domain protein","termid":"PBO:0111893"}


id: PBO:0035699
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_microtubule_plus-end_during_mitotic_interphase","termid":"PBO:0035699"}


id: MONDO:0011386
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any microvascular complications of diabetes, susceptibility in which the cause of the disease is a mutation in the VEGFA gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microvascular complications of diabetes, susceptibility","termid":"MONDO:0000065"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microvascular complications of diabetes, susceptibility to, 1","secondary_identifiers":["UMLS:C2676832","MEDGEN:382957","OMIM:603933"],"synonyms":[{"name":"MVCD1","type":"related"},{"name":"VEGFA microvascular complications of diabetes, susceptibility","type":"exact"},{"name":"end-stage renal disease, diabetic, susceptibility to","type":"related"},{"name":"microvascular complications of diabetes 1","type":"exact"},{"name":"microvascular complications of diabetes, protection against","type":"related"},{"name":"microvascular complications of diabetes, susceptibility caused by mutation in VEGFA","type":"exact"},{"name":"microvascular complications of diabetes, susceptibility to","type":"related"},{"name":"microvascular complications of diabetes, susceptibility to, 1","type":"exact"},{"name":"microvascular complications of diabetes, susceptibility to, type 1","type":"exact"},{"name":"nephropathy, diabetic, susceptibility to","type":"related"},{"name":"neuropathy, diabetic, susceptibility to","type":"related"},{"name":"nonproliferative retinopathy, diabetic, susceptibility to","type":"related"},{"name":"proliferative retinopathy, diabetic, susceptibility to","type":"related"}],"termid":"MONDO:0011386","xrefs":{"Monarch":{"xref_id":"0011386"}}}


id: GO:0006609
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a heterogeneous nuclear ribonucleoprotein from the cytoplasm into the nucleus, across the nuclear membrane.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete mRNA-binding (hnRNP) protein import into nucleus (obsolete GO:0006609)","synonyms":[{"name":"mRNA-binding (hnRNP) protein import into cell nucleus","type":"exact"},{"name":"mRNA-binding (hnRNP) protein transport from cytoplasm to nucleus","type":"exact"},{"name":"mRNA-binding (hnRNP) protein-nucleus import","type":"exact"}],"termid":"GO:0006609"}


id: MONDO:0002021
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disease involving the gingiva.","definition_xrefs":["MONDO:patterns/location_top"],"direct_ancestors":[{"relation_name":"is_a","term_name":"periodontal disorder","termid":"MONDO:0002635"},{"relation_name":"is_a","term_name":"mouth mucosa disorder","termid":"MONDO:0044992"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gingival disorder","secondary_identifiers":["MESH:D005882","NCIT:C173795","UMLS:C0017563","MEDGEN:42217","SCTID:18718003","DOID:1483","EFO:0009670"],"synonyms":[{"name":"disease of gingiva","type":"exact"},{"name":"disease or disorder of gingiva","type":"exact"},{"name":"disorder of gingiva","type":"exact"},{"name":"gingiva disease","type":"exact"},{"name":"gingiva disease or disorder","type":"exact"}],"termid":"MONDO:0002021","xrefs":{"Monarch":{"xref_id":"0002021"}}}


id: GO:2000658
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of apolipoprotein binding.","definition_xrefs":["GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of apolipoprotein binding (obsolete GO:2000658)","termid":"GO:2000658"}


id: PBO:0064317
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipid phosphatase 6","termid":"PBO:0064317"}


id: GO:0102488
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: dTTP + 2 H2O = dTMP + 2 hydrogenphosphate + 2 H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete dTTP phosphohydrolase activity (obsolete GO:0102488)","termid":"GO:0102488"}


id: MONDO:0016255
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A primary, benign or malignant neoplasm of the uterine corpus characterized by the presence of an epithelial and a mesenchymal component. Representative examples include adenomyoma, adenosarcoma, and carcinosarcoma.","definition_xrefs":["NCIT:C40181"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete rare cancer of corpus uteri (obsolete MONDO:0016253)","termid":"MONDO:0016253"},{"relation_name":"is_a","term_name":"mixed neoplasm","termid":"MONDO:0021043"},{"relation_name":"is_a","term_name":"corpus uteri neoplasm","termid":"MONDO:0021254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uterine corpus mixed epithelial and mesenchymal neoplasm","secondary_identifiers":["Orphanet:213589","GARD:20472","UMLS:C1519858","MEDGEN:311425"],"synonyms":[{"name":"body of uterus mixed neoplasm","type":"exact"},{"name":"malignant mixed epithelial and mesenchymal tumor of corpus uteri","type":"related"},{"name":"malignant mixed epithelial and mesenchymal tumour of corpus uteri","type":"related"},{"name":"mixed epithelial and mesenchymal cancer of corpus uteri","type":"narrow"},{"name":"uterine corpus mixed epithelial and mesenchymal neoplasm","type":"exact"},{"name":"uterine corpus mixed epithelial and mesenchymal tumor","type":"exact"},{"name":"uterine corpus mixed epithelial and mesenchymal tumour","type":"exact"}],"termid":"MONDO:0016255","xrefs":{"Monarch":{"xref_id":"0016255"}}}


id: PBO:0039449
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat and LEM domain containing 2","termid":"PBO:0039449"}


id: GO:0043950
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process which activates, maintains or increases the frequency, rate or extent of cAMP-mediated signaling.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cAMP-mediated signaling","termid":"GO:0043949"},{"relation_name":"is_a","term_name":"positive regulation of intracellular signal transduction","termid":"GO:1902533"},{"relation_name":"positively_regulates","term_name":"cAMP-mediated signaling","termid":"GO:0019933"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of cAMP-mediated signaling","synonyms":[{"name":"positive regulation of cAMP-mediated signalling","type":"exact"}],"termid":"GO:0043950"}


id: GO:0021626
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A developmental process, independent of morphogenetic (shape) change, that is required for the central nervous system to attain its fully functional state. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain and spinal cord. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord.","definition_xrefs":["GO_REF:0000021","ISBN:0582227089","GOC:dph","GOC:cls","GOC:dgh","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure maturation","termid":"GO:0071695"},{"relation_name":"part_of","term_name":"central nervous system development","termid":"GO:0007417"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"central nervous system maturation","termid":"GO:0021626"}


id: PBO:0015658
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear 3'-tRNA processing endonuclease tRNAse Z, Trz1","termid":"PBO:0015658"}


id: MONDO:1011220
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Corneal dystrophy that occurs in domestic cat.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"corneal dystrophy, non-human animal","termid":"MONDO:1010320"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"corneal dystrophy, domestic cat","secondary_identifiers":["OMIA:000230-9685"],"termid":"MONDO:1011220","xrefs":{"Monarch":{"xref_id":"1011220"}}}


id: PBO:0050186
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosome binding domain 1 pseudogene 3","termid":"PBO:0050186"}


id: MONDO:0850104
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"encephalitis","termid":"MONDO:0019956"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paraneoplastic isolated brainstem encephalitis","secondary_identifiers":["MEDGEN:1842767","UMLS:C5680406","GARD:22499","Orphanet:624190"],"termid":"MONDO:0850104","xrefs":{"Monarch":{"xref_id":"0850104"}}}


id: MONDO:0005417
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A form of RETINAL degeneration in which abnormal CHOROIDAL NEOVASCULARIZATION occurs under the RETINA and MACULA LUTEA, causing bleeding and leaking of fluid. This leads to bulging and or lifting of the macula and the distortion or destruction of central vision.","definition_xrefs":["MESH:D057135"],"direct_ancestors":[{"relation_name":"is_a","term_name":"age-related macular degeneration","termid":"MONDO:0005150"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"wet macular degeneration","secondary_identifiers":["DOID:10873","MEDGEN:389185","UMLS:C2237660","SCTID:414173003","EFO:0004683","ICD9:362.52"],"synonyms":[{"name":"Kuhnt-Junius degeneration","type":"related"},{"name":"Senile macular degeneration, wet","type":"exact"},{"name":"exudative senile macular degeneration of retina","type":"exact"},{"name":"neovascular age-related macular degeneration","type":"exact"},{"name":"wet AMD","type":"exact"},{"name":"wet ARMD","type":"exact"},{"name":"wet age related macular degeneration","type":"exact"},{"name":"wet senile macular retinal degeneration","type":"exact"}],"termid":"MONDO:0005417","xrefs":{"Monarch":{"xref_id":"0005417"}}}


id: PBO:0050238
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosomal binding domain 2 pseudogene 16","termid":"PBO:0050238"}


id: PBO:0031566
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-catalytic_activity_phenotype","termid":"PBO:0031566"}


id: MONDO:0045039
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"basidiobolomycosis","termid":"MONDO:0000302"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"systemic basidiobolomycosis","secondary_identifiers":["SCTID:240787008","UMLS:C0343967","MEDGEN:575968"],"synonyms":[{"name":"disseminated basidiobolomycosis","type":"exact"}],"termid":"MONDO:0045039","xrefs":{"Monarch":{"xref_id":"0045039"}}}


id: PBO:0116670
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARF like GTPase 6 interacting protein 1 pseudogene 1","termid":"PBO:0116670"}


id: PBO:0083708
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER membrane localized phosphoryltransferase; adds phosphoethanolamine onto the third mannose residue of the glycosylphosphatidylinositol (GPI) anchor precursor; similar to human PIG-O protein","termid":"PBO:0083708"}


id: GO:0019198
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate.","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphoprotein phosphatase activity","termid":"GO:0004721"},{"relation_name":"is_a","term_name":"transmembrane signaling receptor activity","termid":"GO:0004888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0004721"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0038023","GO:0140096","GO:0016787","GO:0016788","GO:0003674","GO:0004721","GO:0003824"],"is_obsolete":false,"name":"transmembrane receptor protein phosphatase activity","termid":"GO:0019198"}


id: GO:0033644
data:
  {"annotated_genes":["SJAG_02392"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[119550],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0085039"}]},"cv_name":"cellular_component","definition":"Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell part","termid":"GO:0033643"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02392":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell membrane","references_by_uniquename":{"PMID:30726171":null},"termid":"GO:0033644","terms_by_termid":{"GO:0085039":null}}


id: PBO:0052516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kelch like family member 30","termid":"PBO:0052516"}


id: PBO:0068680
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 61, pseudogene","termid":"PBO:0068680"}


id: FYPO:0003110
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to a combination of caffeine and rapamycin. Cells stop growing (and may die) at concentrations of caffeine and rapamycin that allow wild type cells to grow.","definition_xrefs":["PMID:23551936","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000139","FYPO:0000003","FYPO:0002683","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to caffeine and rapamycin","synonyms":[{"name":"hypersensitive to caffeine and rapamycin","type":"exact"},{"name":"sensitive to caffeine and rapamycin during mitotic cell cycle","type":"related"},{"name":"sensitive to caffeine and rapamycin during vegetative growth","type":"exact"},{"name":"sensitive to caffeine and rapamycin in combination","type":"exact"}],"termid":"FYPO:0003110"}


id: GO:0005028
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete CD40 receptor activity (obsolete GO:0005028)","synonyms":[{"name":"CD40 receptor activity","type":"exact"}],"termid":"GO:0005028"}


id: PBO:0073880
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 10 member 7","termid":"PBO:0073880"}


id: GO:0002103
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Endonucleolytic cleavage of a pre-rRNA molecule originally produced as a tetracistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, Large Subunit (LSU) the 4.5S rRNA, and the 5S rRNA in that order from 5' to 3' along the primary transcript. Primary ribosomal RNA transcripts with four genes, in this order, are produced in the chloroplasts of vascular plants. Note that the use of the word tetracistronic refers only to the number of mature rRNA molecules which will be produced from the primary transcript and ignores tRNAs that may also be present within the primary transcript.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA processing","termid":"GO:0006364"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0042254"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0042254","GO:0044085"],"is_obsolete":false,"name":"endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)","termid":"GO:0002103"}


id: GO:0060860
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of floral organ abscission, the controlled shedding of floral organs.","definition_xrefs":["GOC:dph","GOC:sdb_2009","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of developmental process","termid":"GO:0050793"},{"relation_name":"is_a","term_name":"regulation of reproductive process","termid":"GO:2000241"},{"relation_name":"regulates","term_name":"floral organ abscission","termid":"GO:0010227"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of floral organ abscission","termid":"GO:0060860"}


id: GO:0071852
data:
  {"annotated_genes":["SJAG_05272","SJAG_04851","SJAG_04483","SJAG_02733","SJAG_01835","SJAG_02192","SJAG_04073","SJAG_01017","SJAG_02446","SJAG_04236","SJAG_04666","SJAG_04850","SJAG_00610","SJAG_00218","SJAG_03587","SJAG_02916","SJAG_02278","SJAG_04551","SJAG_03057","SJAG_01888","SJAG_02649","SJAG_04238","SJAG_03753","SJAG_04327","SJAG_02590","SJAG_03444","SJAG_04771","SJAG_01453","SJAG_02727","SJAG_04462","SJAG_05285","SJAG_01028","SJAG_03646","SJAG_01426","SJAG_04878","SJAG_00667","SJAG_04620","SJAG_03013","SJAG_01321","SJAG_01171","SJAG_02845","SJAG_00163","SJAG_05001","SJAG_03295","SJAG_04864","SJAG_04668","SJAG_01227","SJAG_00974","SJAG_03705","SJAG_02222","SJAG_01290","SJAG_00310","SJAG_03631","SJAG_01181","SJAG_04184","SJAG_01774","SJAG_00424","SJAG_03123","SJAG_01963","SJAG_03483","SJAG_00876","SJAG_01288","SJAG_04868","SJAG_04595","SJAG_02468","SJAG_00661","SJAG_02684","SJAG_02718"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90054,92587,117788],"is_not":false,"summary":null,"term":"GO:0071852"},{"annotations":[94787],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0034413"},{"annotations":[88531,89025,90572,92093],"is_not":false,"rel_names":["is_a","part_of"],"summary":null,"term":"GO:0030476"},{"annotations":[73411],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0034412"},{"annotations":[109395,118110,104487,114411,118118],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070591"},{"annotations":[71796,70974,73920,78988,73738],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0070600"},{"annotations":[106432,116148,91919,73413,71250,113494,74843,76195],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071970"},{"annotations":[78585,102961],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0070880"},{"annotations":[95429,102264,102263,108387],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0070879"},{"annotations":[79736,70918,93662,102773,70588,100946,71732,71098,95576,118235,75232],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009272"},{"annotations":[102265,102266,100473,111645,89417,108388,94345,88598],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904541"},{"annotations":[79842,80674,77142,71603,75612,76765,110376,71301,76194,71249,78152,74842,78231,75528,89656,102774],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031505"},{"annotations":[72803,107018],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071966"},{"annotations":[87833,92744],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0140748"},{"annotations":[95266,103167,89761,92750],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0070610"},{"annotations":[102469,93037,100505],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0032995"},{"annotations":[111312,71898,87908],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0060237"}]},"cv_name":"biological_process","definition":"A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a fungal-type cell wall.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell wall organization or biogenesis","termid":"GO:0071554"}],"gene_count":68,"genes_by_uniquename":{"SJAG_00163":null,"SJAG_00218":null,"SJAG_00310":null,"SJAG_00424":null,"SJAG_00610":null,"SJAG_00661":null,"SJAG_00667":null,"SJAG_00876":null,"SJAG_00974":null,"SJAG_01017":null,"SJAG_01028":null,"SJAG_01171":null,"SJAG_01181":null,"SJAG_01227":null,"SJAG_01288":null,"SJAG_01290":null,"SJAG_01321":null,"SJAG_01426":null,"SJAG_01453":null,"SJAG_01774":null,"SJAG_01835":null,"SJAG_01888":null,"SJAG_01963":null,"SJAG_02192":null,"SJAG_02222":null,"SJAG_02278":null,"SJAG_02446":null,"SJAG_02468":null,"SJAG_02590":null,"SJAG_02649":null,"SJAG_02684":null,"SJAG_02718":null,"SJAG_02727":null,"SJAG_02733":null,"SJAG_02845":null,"SJAG_02916":null,"SJAG_03013":null,"SJAG_03057":null,"SJAG_03123":null,"SJAG_03295":null,"SJAG_03444":null,"SJAG_03483":null,"SJAG_03587":null,"SJAG_03631":null,"SJAG_03646":null,"SJAG_03705":null,"SJAG_03753":null,"SJAG_04073":null,"SJAG_04184":null,"SJAG_04236":null,"SJAG_04238":null,"SJAG_04327":null,"SJAG_04462":null,"SJAG_04483":null,"SJAG_04551":null,"SJAG_04595":null,"SJAG_04620":null,"SJAG_04666":null,"SJAG_04668":null,"SJAG_04771":null,"SJAG_04850":null,"SJAG_04851":null,"SJAG_04864":null,"SJAG_04868":null,"SJAG_04878":null,"SJAG_05001":null,"SJAG_05272":null,"SJAG_05285":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0071554","GO:0008150"],"is_obsolete":false,"name":"fungal-type cell wall organization or biogenesis","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"fungal-type cell wall organisation or biogenesis","type":"exact"},{"name":"fungal-type cell wall organization and biogenesis","type":"related"}],"termid":"GO:0071852","terms_by_termid":{"GO:0009272":null,"GO:0030476":null,"GO:0031505":null,"GO:0032995":null,"GO:0034412":null,"GO:0034413":null,"GO:0060237":null,"GO:0070591":null,"GO:0070600":null,"GO:0070610":null,"GO:0070879":null,"GO:0070880":null,"GO:0071852":null,"GO:0071966":null,"GO:0071970":null,"GO:0140748":null,"GO:1904541":null}}


id: PBO:0047604
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile histidine triad diadenosine triphosphatase","termid":"PBO:0047604"}


id: MOD:01341
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Isotopic label -","definition_xrefs":["Unimod:90#K"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ESP-Tag light d0","termid":"MOD:00468"},{"relation_name":"is_a","term_name":"modified L-lysine residue","termid":"MOD:00912"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ESP-Tag light d0 - site K","synonyms":[{"name":"ESP","type":"related"},{"name":"ESP-Tag light d0","type":"related"}],"termid":"MOD:01341"}


id: GO:0070722
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A transcriptional repressor complex that consists of a heterodimer of the proteins Tle3 (also known as Grg3b) and Aes (Grg5), which are homologs of the Drosophila groucho gene product.","definition_xrefs":["PMID:8955148","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II transcription repressor complex","termid":"GO:0090571"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005634","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"Tle3-Aes complex","synonyms":[{"name":"Grg3b-Grg5 complex","type":"exact"}],"termid":"GO:0070722"}


id: PBO:0040562
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"B4GALNT2 pseudogene 1","termid":"PBO:0040562"}


id: MONDO:0031115
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dyskinesia with orofacial involvement","secondary_identifiers":["MEDGEN:1859334","OMIMPS:606703","UMLS:C5908309"],"synonyms":[{"name":"ADCY5-Related Dyskinesia","type":"exact"}],"termid":"MONDO:0031115","xrefs":{"Monarch":{"xref_id":"0031115"}}}


id: GO:0102984
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: sulfonatoacetaldehyde + H2O + NAD = sulfonatoacetate + NADH + 2 H+.","definition_xrefs":["GOC:pz","EC:1.2.1.73"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor","termid":"GO:0016620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"sulfoacetaldehyde dehydrogenase activity","secondary_identifiers":["RHEA:25637","MetaCyc:RXN-9592"],"termid":"GO:0102984"}


id: PBO:0064687
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A pseudogene 23","termid":"PBO:0064687"}


id: SO:0000785
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The region of sequence that has been inserted and is being propagated by the clone.","direct_ancestors":[{"relation_name":"is_a","term_name":"reagent","termid":"SO:0000695"},{"relation_name":"part_of","term_name":"clone_insert","termid":"SO:0000753"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cloned_region","synonyms":[{"name":"cloned region","type":"exact"},{"name":"cloned segment","type":"exact"}],"termid":"SO:0000785"}


id: SO:0001810
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A polypeptide region that mediates binding to PCNA. The consensus sequence is QXX(hh)XX(aa), where (h) denotes residues with moderately hydrophobic side chains and (a) denotes residues with highly hydrophobic aromatic side chains.","definition_xrefs":["PMID:9631646"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein_protein_contact","termid":"SO:0001093"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"PIP_box","synonyms":[{"name":"PIP box","type":"exact"}],"termid":"SO:0001810"}


id: PBO:0057052
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 138-1","termid":"PBO:0057052"}


id: PBO:0000253
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium channel regulatory subunit Yam8","termid":"PBO:0000253"}


id: FYPO:0002989
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of one or more transmembrane transport messenger RNAs measured in a cell is higher than normal (i.e. higher than observed in wild-type cells).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of transport gene mRNA during vegetative growth","termid":"FYPO:0004490"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0006551"],"is_obsolete":false,"name":"increased level of transmembrane transport gene mRNA during vegetative growth","synonyms":[{"name":"increased level of transmembrane transport gene RNA during vegetative growth","type":"exact"},{"name":"increased level of transmembrane transport gene mRNA during mitotic cell cycle","type":"related"},{"name":"increased level of transmembrane transport gene transcripts during vegetative growth","type":"exact"},{"name":"increased mRNA level of genes involved in transmembrane transport during vegetative growth","type":"exact"},{"name":"increased mRNA level of transmembrane transport genes during vegetative growth","type":"exact"},{"name":"increased transmembrane transport gene mRNA accumulation during vegetative growth","type":"related"}],"termid":"FYPO:0002989"}


id: MONDO:0975705
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"otofacial neurodevelopmental syndrome","secondary_identifiers":["MEDGEN:1857968","UMLS:C5935642","OMIM:620910"],"termid":"MONDO:0975705","xrefs":{"Monarch":{"xref_id":"0975705"}}}


id: PBO:0084602
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Merged open reading frame; does not encode a discrete protein; YLR391W was originally annotated as an independent ORF, but was completely contained in larger ORF YLR391W-A in the same frame, and was merged into it on 7-30-1997","termid":"PBO:0084602"}


id: MONDO:0011424
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Carney's triad is a rare non-hereditary condition characterized by gastrointestinal stromal tumors (GIST, intramural mesenchymal tumors of the gastrointestinal tract with neuronal or neural crest cell origin), pulmonary chondromas and extraadrenal paragangliomas.","definition_xrefs":["Orphanet:139411"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multiple polyglandular tumor","termid":"MONDO:0015079"},{"relation_name":"is_a","term_name":"neoplastic syndrome","termid":"MONDO:0021058"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Carney triad","secondary_identifiers":["MESH:C565803","MEDGEN:388099","UMLS:C1858592","icd11.foundation:1771169701","NCIT:C94833","OMIM:604287","SCTID:733492003","GARD:10924"],"synonyms":[{"name":"Carney triad","type":"exact"},{"name":"gastric leiomyosarcoma, pulmonary chondroma, and extraadrenal paraganglioma","type":"related"}],"termid":"MONDO:0011424","xrefs":{"Monarch":{"xref_id":"0011424"}}}


id: PBO:0072377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS27A pseudogene 3","termid":"PBO:0072377"}


id: PATO:0001060
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001060 absolute efficiency (obsolete PATO:0001060)","termid":"PATO:0001060"}


id: PBO:0042827
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carboxylesterase 5A pseudogene 1","termid":"PBO:0042827"}


id: PBO:0051518
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 1 family member 10","termid":"PBO:0051518"}


id: GO:0099191
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Cell-cell signaling between presynapse and postsynapse mediated by brain-derived neurotrophic factor (BDNF) crossing the synaptic cleft.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trans-synaptic signaling","termid":"GO:0099537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"trans-synaptic signaling by BDNF","synonyms":[{"name":"trans-synaptic signaling by brain-derived neurotrophic factor","type":"exact"}],"termid":"GO:0099191"}


id: GO:1990615
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that regulates actin cable formation, polarized cell growth, and cytokinesis in a formin-dependent manner. In S. cerevisiae the complex is composed of Bud14p and two Kelch family proteins, Kel1p and Kel2p.","definition_xrefs":["PMID:24828508"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"Kelch-containing formin regulatory complex","synonyms":[{"name":"Bud14-Kel1-Kel2 complex","type":"narrow"},{"name":"KFRC complex","type":"exact"}],"termid":"GO:1990615"}


id: PATO:0000167
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A limited, often assigned period of activity.","definition_xrefs":["answers.com:answers.com"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000167 bouts (obsolete PATO:0000167)","termid":"PATO:0000167"}


id: MONDO:0004061
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete mitochondrial myopathy (obsolete MONDO:0004061)","termid":"MONDO:0004061","xrefs":{"Monarch":{"xref_id":"0004061"}}}


id: PBO:0017091
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPF0300 family protein 6","termid":"PBO:0017091"}


id: GO:0046817
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Interacts with chemokine receptors to reduce the action of a chemokine.","definition_xrefs":["GOC:ai","ISBN:0781718325"],"direct_ancestors":[{"relation_name":"is_a","term_name":"receptor antagonist activity","termid":"GO:0048019"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"negatively_regulates","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0140678"},{"rel_name":"regulates","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0005515","GO:0098772","GO:0003674","GO:0005488","GO:0140678","GO:0038023"],"is_obsolete":false,"name":"chemokine receptor antagonist activity","termid":"GO:0046817"}


id: GO:0048538
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the thymus over time, from its formation to the mature structure. The thymus is a symmetric bi-lobed organ involved primarily in the differentiation of immature to mature T cells, with unique vascular, nervous, epithelial, and lymphoid cell components.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hematopoietic or lymphoid organ development","termid":"GO:0048534"},{"relation_name":"is_a","term_name":"gland development","termid":"GO:0048732"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"thymus development","termid":"GO:0048538"}


id: PBO:0053413
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 351","termid":"PBO:0053413"}


id: PBO:0062179
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily M member 2B","termid":"PBO:0062179"}


id: FYPO:0000598
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of vacuolar transport is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased intracellular transport","termid":"FYPO:0000464"},{"relation_name":"is_a","term_name":"abnormal vacuolar transport during vegetative growth","termid":"FYPO:0000597"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000138","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"decreased vacuolar transport","synonyms":[{"name":"decreased vacuolar protein transport","type":"narrow"},{"name":"decreased vacuolar transport during mitotic cell cycle","type":"related"},{"name":"decreased vacuolar transport during vegetative growth","type":"exact"},{"name":"reduced vacuolar transport","type":"exact"},{"name":"vacuolar transport: decreased","type":"related"}],"termid":"FYPO:0000598"}


id: MONDO:0003153
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A brain stem glioma that occurs in an adult.","definition_xrefs":["MONDO:design_pattern"],"direct_ancestors":[{"relation_name":"is_a","term_name":"brain stem glioma","termid":"MONDO:0002911"},{"relation_name":"is_a","term_name":"adult brain stem neoplasm","termid":"MONDO:0024797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"adult brainstem glioma","secondary_identifiers":["UMLS:C0278873","DOID:4813","NCIT:C9091","MEDGEN:124526"],"synonyms":[{"name":"adult brain stem glioma","type":"exact"},{"name":"adult brainstem glioma","type":"exact"},{"name":"adult brainstem neuroglial neoplasm","type":"exact"},{"name":"adult brainstem neuroglial tumor","type":"exact"},{"name":"adult brainstem neuroglial tumour","type":"exact"},{"name":"brain stem glioma","type":"broad"},{"name":"brain stem glioma of adults","type":"exact"},{"name":"glioma of adult brain stem","type":"exact"},{"name":"glioma of the adult brain stem","type":"exact"}],"termid":"MONDO:0003153","xrefs":{"Monarch":{"xref_id":"0003153"}}}


id: PBO:0083443
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified, essential ORF ERG27/YLR100W","termid":"PBO:0083443"}


id: MOD:00850
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that inserts or replaces a residue with an unnatural residue that is not considered to be derived from a natural residue by some chemical process.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification categorized by amino acid modified","termid":"MOD:01157"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unnatural residue","termid":"MOD:00850"}


id: GO:0048587
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of short-day photoperiodism, where the response associated with the photoperiodism is flowering. Flowering is defined by the switch from the vegetative to the reproductive phase.","definition_xrefs":["ISBN:0697037754","ISBN:0709408862","GOC:jid","GOC:pj","ISBN:0582015952"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of photoperiodism, flowering","termid":"GO:2000028"},{"relation_name":"regulates","term_name":"short-day photoperiodism, flowering","termid":"GO:0048575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of short-day photoperiodism, flowering","termid":"GO:0048587"}


id: MONDO:0013141
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete autosomal dominant macrothrombocytopenia TUBB1-related (obsolete MONDO:0013141)","secondary_identifiers":["NANDO:2200667"],"termid":"MONDO:0013141","xrefs":{"Monarch":{"xref_id":"0013141"}}}


id: PR:O74411
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- meu10 gene.","definition_xrefs":["UniProtKB:O74411","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic expression up-regulated protein 10 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1223.12c","synonyms":[{"name":"Spom972h-meu10","type":"exact"}],"termid":"PR:O74411"}


id: PBO:0087534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of phosphatidylinositol (PtdIns) 3-kinase complexes I and II; Complex I is essential in autophagy, Complex II is required for vacuolar protein sorting; required for overflow degradation of misfolded proteins when ERAD is saturated; C-terminus has novel globular fold essential for autophagy through the targeting of the PI3-kinase complex I to the pre-autophagosomal structure; ortholog of higher eukaryote gene Beclin 1; human BECN1 can complement yeast null mutant","termid":"PBO:0087534"}


id: MONDO:0018028
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Tetrasomy 5p is a rare chromosomal anomaly syndrome with variable phenotype principally characterized by developmental delay, growth retardation/short stature, hypotonia, seizures, venriculomegaly, hand and foot anomalies (e.g. clinodactyly, overlapping toes) and mosaic pigmentary skin changes. Patients may also present minor dysmorphic craniofacial features (incl. macrocephaly, upslanting palpebral fissures, hypertelorism, abnormal auricles, anteverted nasal tip, midface hypoplasia).","definition_xrefs":["Orphanet:3309"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete chromosomal anomaly with cataract (obsolete MONDO:0020226)","termid":"MONDO:0020226"},{"relation_name":"is_a","term_name":"partial trisomy/tetrasomy of the short arm of chromosome 5","termid":"MONDO:0016942"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetrasomy 5p","secondary_identifiers":["UMLS:C0795813","SCTID:766755003","MEDGEN:1638801","GARD:18792"],"synonyms":[{"name":"Isochromosome 5p","type":"exact"},{"name":"tetrasomy type 5p","type":"exact"}],"termid":"MONDO:0018028","xrefs":{"Monarch":{"xref_id":"0018028"}}}


id: GO:1990985
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any biological process that results in permanent cessation of all vital functions of a cell upon exposure to oxidative stress.","definition_xrefs":["GOC:pg","PMID:25950479"],"gene_count":0,"genotype_count":0,"name":"obsolete apoptosis in response to oxidative stress (obsolete GO:1990985)","termid":"GO:1990985"}


id: MONDO:0010497
data:
  {"annotated_genes":["SJAG_00786"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85640],"is_not":false,"summary":null,"term":"MONDO:0010497"}]},"cv_name":"mondo","definition":"An inherited condition caused by mutation(s) in the DDX3X gene, encoding ATP-dependent RNA helicase DDX3X. It is characterized by severe intellectual disability and variable neurologic features.","definition_xrefs":["NCIT:C129931"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-syndromic X-linked intellectual disability","termid":"MONDO:0019181"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00786":null},"genotype_count":0,"is_obsolete":false,"name":"intellectual disability, X-linked 102","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1715418","UMLS:C5393299","OMIM:300958"],"synonyms":[{"name":"DDX3X non-syndromic X-linked intellectual disability","type":"exact"},{"name":"DDX3X-related intellectual disability","type":"related"},{"name":"MRX102","type":"related"},{"name":"intellectual developmental disorder, X-linked, syndrome, Snijders Blok type, X-linked recessive, X-linked dominant","type":"exact"},{"name":"intellectual disability, X-linked 102","type":"exact"},{"name":"intellectual disability, X-linked type 102","type":"exact"},{"name":"mental retardation, X-linked 102","type":"related"},{"name":"mental retardation, X-linked type 102","type":"exact"},{"name":"non-syndromic X-linked intellectual disability caused by mutation in DDX3X","type":"exact"}],"termid":"MONDO:0010497","terms_by_termid":{"MONDO:0010497":null},"xrefs":{"Monarch":{"xref_id":"0010497"}}}


id: MONDO:1012800
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any arthrogryposis multiplex congenita that occurs in cattle due to a mutation in the AGRN gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arthrogryposis multiplex congenita, cattle","termid":"MONDO:1011474"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arthrogryposis multiplex congenita, AGRN-related, cattle","secondary_identifiers":["OMIA:002135-9913"],"synonyms":[{"name":"BHAC","type":"exact"},{"name":"Bovine Hereditary Arthrogyposis Multiplex Congentia","type":"broad"},{"name":"curly calf syndrome","type":"related"}],"termid":"MONDO:1012800","xrefs":{"Monarch":{"xref_id":"1012800"}}}


id: SO:0002084
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant in which a change has occurred within the exonic region of the splice site, 1-2 bases from boundary.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"splice_region_variant","termid":"SO:0001630"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exonic_splice_region_variant","synonyms":[{"name":"ANNOVAR:exonic;splicing","type":"exact"},{"name":"Seattleseq:coding-near-splice","type":"related"},{"name":"exonic splice region variant","type":"exact"}],"termid":"SO:0002084"}


id: PBO:0116299
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Conserved component of the MICOS complex; MICOS (formerly MINOS or MitOS), a mitochondrial inner membrane (MIM) complex extends into the intermembrane space and has a role in the maintenance of crista junctions, MIM architecture, and formation of contact sites to the outer membrane; forms a subcomplex with Mic12p and Mic27p whose assembly and stability requires cardiolipin; homo-oligomers cause membrane bending; oligomerization state regulated by Mic26p and Mic27p; ortholog of human MINOS1","termid":"PBO:0116299"}


id: GO:0018600
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: alpha-pinene + O2 + 2 H+ + 2 e- = H2O + myrtenol.","definition_xrefs":["UM-BBD_reactionID:r0709"],"gene_count":0,"genotype_count":0,"name":"obsolete alpha-pinene dehydrogenase activity (obsolete GO:0018600)","termid":"GO:0018600"}


id: PBO:0077203
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TM4SF19 antisense RNA 1","termid":"PBO:0077203"}


id: PBO:0028649
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_mRNA_splicing,_via_spliceosome","termid":"PBO:0028649"}


id: PR:O94677
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A conserved oligomeric Golgi complex subunit 6 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR21506:SF0","PRO:DNx","OMA:SCHPO03602"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved oligomeric Golgi complex subunit 6 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC776.10c","secondary_identifiers":["UniProtKB:O94677"],"synonyms":[{"name":"COG complex subunit 6 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-COG6","type":"exact"},{"name":"component of oligomeric Golgi complex 6 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94677"}


id: GO:0018704
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 5-chloro-2-hydroxymuconic semialdehyde + H+ + 2 e- = Cl- + 2-hydroxymuconic semialdehyde.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 5-chloro-2-hydroxymuconic semialdehyde dehalogenase activity (obsolete GO:0018704)","synonyms":[{"name":"5-chloro-2-hydroxymuconic semialdehyde dehalogenase activity","type":"exact"}],"termid":"GO:0018704"}


id: PBO:0027024
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_L-aminoadipate-semialdehyde_dehydrogenase_activity","termid":"PBO:0027024"}


id: PR:G2TRN7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC212.06c gene.","definition_xrefs":["PRO:DNx","UniProtKB:G2TRN7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RecQ DNA helicase-like protein C212.06c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC212.06c","synonyms":[{"name":"Spom972h-SPAC212.06c","type":"exact"}],"termid":"PR:G2TRN7"}


id: PBO:0004924
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved eukaryotic nuclear protein implicated in meiotic chromosome segregation","termid":"PBO:0004924"}


id: PBO:0032772
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"riboflavin synthase Rib5","termid":"PBO:0032772"}


id: MOD:01975
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to S-(poly-3-hydroxybutyrate)-L-cysteine.","definition_xrefs":["PubMed:19711985","PubMed:9888824","RESID:AA0617"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-acylated residue","termid":"MOD:00672"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"S-poly(3-hydroxybutyrate)-L-cysteine","synonyms":[{"name":"(alpha)-([(2R)-2-amino-2-carboxyethyl]sulfanyl)-(omega)-[(3R)-3-hydroxybutanoyl]-poly([(3R)-3-methyl-1-oxopropane-1,3-diyl]oxy)","type":"exact"},{"name":"MOD_RES S-poly(beta-hydroxybutyryl)lysine","type":"exact"},{"name":"S-poly(3-hydroxybutanoate)cysteine","type":"exact"},{"name":"S-poly(3-hydroxybutanoic acid)cysteine","type":"exact"},{"name":"S-poly(3-hydroxybutyrate)-L-cysteine","type":"exact"},{"name":"S-poly(3-hydroxybutyrate)cysteine","type":"exact"},{"name":"S-poly(3-hydroxybutyric acid)cysteine","type":"exact"},{"name":"S-poly(beta-hydroxybutyrate)cysteine","type":"exact"},{"name":"S-poly[(R)-3-hydroxybutyrate]cysteine","type":"exact"}],"termid":"MOD:01975"}


id: GO:0035507
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of myosin-light-chain-phosphatase activity.","definition_xrefs":["GOC:bf","GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of myosin-light-chain-phosphatase activity (obsolete GO:0035507)","termid":"GO:0035507"}


id: GO:0045347
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of MHC class II.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of macromolecule biosynthetic process","termid":"GO:0010558"},{"relation_name":"is_a","term_name":"regulation of MHC class II biosynthetic process","termid":"GO:0045346"},{"relation_name":"negatively_regulates","term_name":"MHC class II biosynthetic process","termid":"GO:0045342"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of MHC class II biosynthetic process","synonyms":[{"name":"down regulation of MHC class II biosynthetic process","type":"exact"},{"name":"down-regulation of MHC class II biosynthetic process","type":"exact"},{"name":"downregulation of MHC class II biosynthetic process","type":"exact"},{"name":"inhibition of MHC class II biosynthetic process","type":"narrow"},{"name":"negative regulation of MHC class II anabolism","type":"exact"},{"name":"negative regulation of MHC class II biosynthesis","type":"exact"},{"name":"negative regulation of MHC class II formation","type":"exact"},{"name":"negative regulation of MHC class II synthesis","type":"exact"},{"name":"negative regulation of major histocompatibility complex class II biosynthesis","type":"exact"},{"name":"negative regulation of major histocompatibility complex class II biosynthetic process","type":"exact"}],"termid":"GO:0045347"}


id: PBO:0049209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamate ionotropic receptor NMDA type subunit 2C","termid":"PBO:0049209"}


id: GO:1900259
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of RNA-directed 5'-3' RNA polymerase activity.","definition_xrefs":["GOC:pf","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of RNA-dependent RNA polymerase activity (obsolete GO:1900259)","synonyms":[{"name":"regulation of 3D polymerase activity","type":"exact"},{"name":"regulation of Q-beta replicase activity","type":"exact"},{"name":"regulation of RDRP","type":"related"},{"name":"regulation of RNA nucleotidyltransferase (RNA-directed) activity","type":"exact"},{"name":"regulation of RNA replicase activity","type":"exact"},{"name":"regulation of RNA synthetase activity","type":"related"},{"name":"regulation of RNA-dependent RNA replicase activity","type":"exact"},{"name":"regulation of RNA-dependent ribonucleate nucleotidyltransferase activity","type":"exact"},{"name":"regulation of RNA-directed 5'-3' RNA polymerase activity","type":"exact"},{"name":"regulation of nucleoside-triphosphate:RNA nucleotidyltransferase (RNA-directed)","type":"exact"},{"name":"regulation of ribonucleic acid replicase activity","type":"exact"},{"name":"regulation of ribonucleic acid-dependent ribonucleate nucleotidyltransferase activity","type":"exact"},{"name":"regulation of ribonucleic acid-dependent ribonucleic acid polymerase activity","type":"exact"},{"name":"regulation of ribonucleic replicase activity","type":"exact"},{"name":"regulation of ribonucleic synthetase activity","type":"related"},{"name":"regulation of transcriptase","type":"broad"}],"termid":"GO:1900259"}


id: GO:0047480
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine + ATP + D-alanyl-D-alanine = phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D-alanyl-D-alanine + ADP.","definition_xrefs":["EC:6.3.2.10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-amino acid ligase activity","termid":"GO:0016881"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016874","GO:0003674"],"is_obsolete":false,"name":"UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity","secondary_identifiers":["RHEA:16085","MetaCyc:6.3.2.10-RXN"],"synonyms":[{"name":"MurF synthetase activity","type":"related"},{"name":"UDP-MurNAc-L-Ala-D-Glu-L-Lys:D-Ala-D-Ala ligase activity","type":"related"},{"name":"UDP-MurNAc-pentapeptide synthetase activity","type":"related"},{"name":"UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysine:D-alanyl-D-alanine ligase (ADP-forming)","type":"related"},{"name":"UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D-alanyl-D-alanine synthetase activity","type":"related"},{"name":"UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine synthetase activity","type":"related"},{"name":"UDP-N-acetylmuramoylalanine-D-glutamyl-lysine--D-alanyl-D-alanine ligase activity","type":"related"},{"name":"UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-alanyl-D-alanine ligase activity","type":"exact"},{"name":"UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase activity","type":"related"},{"name":"UDP-N-acetylmuramoylalanyl-D-glutamyl-lysine-D-alanyl-D-alanine ligase activity","type":"related"},{"name":"UDP-N-acetylmuramoylalanyl-tripeptide-D-alanyl-D-alanine ligase activity","type":"exact"},{"name":"UDPacetylmuramoylpentapeptide synthetase activity","type":"related"},{"name":"uridine diphosphoacetylmuramoylpentapeptide synthetase activity","type":"related"}],"termid":"GO:0047480"}


id: MONDO:0800120
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare lung condition characterized by often predominantly unilateral lung hyperlucency and air trapping. The condition is a post-infectious form of bronchiolitis obliterans and typically follows a viral respiratory infection in infancy and childhood. Adenovirus infection is considered the most usual epidemiology. In SJS, the involved lung or portion of the lung does not grow normally and is slightly smaller than the opposite lung: in particular, peripheral branches of the pulmonary vessels do not develop, and vasculature is arreseted at the stage at which the infection occurred. Patients respond well to management with bronchodilators, even though this is not primarily a bronchial abnormality.","definition_xrefs":["PMID:32119329"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bronchiolitis","termid":"MONDO:0002465"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mac-Leod-Swyer-James-Syndrome","synonyms":[{"name":"SJS","type":"exact"},{"name":"Swyer-James-(Macleod)-Syndrome","type":"exact"}],"termid":"MONDO:0800120","xrefs":{"Monarch":{"xref_id":"0800120"}}}


id: PBO:0026872
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_phosphorylation_of_RNA_polymerase_II_C-terminal_domain_serine_5_residues_during_vegetative_growth","termid":"PBO:0026872"}


id: MONDO:0022735
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"central nervous system cyst","termid":"MONDO:0005262"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"choroid plexus cyst","secondary_identifiers":["SCTID:230790004","UMLS:C0338597","MEDGEN:87376","NCIT:C4351"],"synonyms":[{"name":"CPC - choroid plexus cyst","type":"related"},{"name":"choroid plexus cyst","type":"exact"}],"termid":"MONDO:0022735","xrefs":{"Monarch":{"xref_id":"0022735"}}}


id: PBO:0081577
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF503 antisense RNA 1","termid":"PBO:0081577"}


id: PBO:0040718
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCL9 transcription coactivator","termid":"PBO:0040718"}


id: PR:000027552
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A histone H2A.2 that has been post-translationally modified to include at least one phosphorylated residue.","definition_xrefs":["PRO:CNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H2A.2","termid":"PR:000027545"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H2A.2 phosphorylated form","synonyms":[{"name":"HTA2/PhosRes+","type":"exact"}],"termid":"PR:000027552"}


id: GO:0035481
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of the series of molecular signals initiated by binding of an extracellular ligand to a Notch receptor on the surface of the target cell that contributes to heart induction.","definition_xrefs":["GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of Notch signaling pathway involved in heart induction (obsolete GO:0035481)","synonyms":[{"name":"positive regulation of Notch signalling pathway involved in heart induction","type":"exact"}],"termid":"GO:0035481"}


id: PBO:0056000
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated","termid":"PBO:0056000"}


id: PBO:0052108
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KCNAB1 antisense RNA 2","termid":"PBO:0052108"}


id: GO:0032266
data:
  {"annotated_genes":["SJAG_01519","SJAG_01382","SJAG_00971","SJAG_04963","SJAG_02248","SJAG_02852","SJAG_00638","SJAG_00115","SJAG_01783","SJAG_00173","SJAG_00314","SJAG_03851","SJAG_01135","SJAG_02587","SJAG_04024","SJAG_03250","SJAG_04219","SJAG_04010"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[67726,70854,72170,73444,73778,74937,78549,80123,80684,90905,91829,96254,100026,100164,100165,105154,109964,110319],"is_not":false,"summary":null,"term":"GO:0032266"}]},"cv_name":"molecular_function","definition":"Binding to phosphatidylinositol-3-phosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 3' position.","definition_xrefs":["GOC:bf","PMID:10209156","PMID:11395417","PMID:11557775"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylinositol phosphate binding","termid":"GO:1901981"}],"gene_count":18,"genes_by_uniquename":{"SJAG_00115":null,"SJAG_00173":null,"SJAG_00314":null,"SJAG_00638":null,"SJAG_00971":null,"SJAG_01135":null,"SJAG_01382":null,"SJAG_01519":null,"SJAG_01783":null,"SJAG_02248":null,"SJAG_02587":null,"SJAG_02852":null,"SJAG_03250":null,"SJAG_03851":null,"SJAG_04010":null,"SJAG_04024":null,"SJAG_04219":null,"SJAG_04963":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008289"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0008289","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"phosphatidylinositol-3-phosphate binding","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"PtdIns-3-P binding","type":"exact"},{"name":"phosphatidylinositol 3-phosphate binding","type":"exact"}],"termid":"GO:0032266","terms_by_termid":{"GO:0032266":null}}


id: PR:O74848
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mug146 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74848"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 146 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1235.12c","synonyms":[{"name":"Spom972h-mug146","type":"exact"}],"termid":"PR:O74848"}


id: FYPO:0004961
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at replication origins is increased.","definition_xrefs":["PomBase:mah","PMID:12419251"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein localization to chromatin during vegetative growth","termid":"FYPO:0003011"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"increased protein localization to chromatin at replication origin","synonyms":[{"name":"increased protein localisation to chromatin at replication origin","type":"exact"},{"name":"increased protein localization to chromatin at replication origins during mitotic cell cycle","type":"related"},{"name":"increased protein localization to chromatin at replication origins during vegetative growth","type":"exact"}],"termid":"FYPO:0004961"}


id: GO:0034768
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: geranyl diphosphate = (E)-beta-ocimene + diphosphate.","definition_xrefs":["EC:4.2.3.106","PMID:12624761"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on phosphates","termid":"GO:0016838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"(E)-beta-ocimene synthase activity","secondary_identifiers":["MetaCyc:RXN-5109","RHEA:32691"],"termid":"GO:0034768"}


id: SO:0000651
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Cytosolic LSU rRNA is an RNA component of the large subunit of cytosolic ribosomes.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"rRNA_large_subunit_primary_transcript","termid":"SO:0000325"},{"relation_name":"is_a","term_name":"cytosolic_rRNA","termid":"SO:0002343"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytosolic_LSU_rRNA","synonyms":[{"name":"cytosolic LSU RNA","type":"exact"},{"name":"cytosolic LSU rRNA","type":"exact"},{"name":"cytosolic large subunit rRNA","type":"exact"}],"termid":"SO:0000651"}


id: MONDO:1012224
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"progressive cerebellar abiotrophy, non-human animal","termid":"MONDO:1011857"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"progressive cerebellar abiotrophy, pig","secondary_identifiers":["OMIA:000826-9823"],"termid":"MONDO:1012224","xrefs":{"Monarch":{"xref_id":"1012224"}}}


id: PBO:0001177
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamate-tRNA ligase (predicted)","termid":"PBO:0001177"}


id: GO:0048557
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the digestive tract are generated and organized during embryonic development. The digestive tract is the anatomical structure through which food passes and is processed.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic organ morphogenesis","termid":"GO:0048562"},{"relation_name":"part_of","term_name":"digestive tract morphogenesis","termid":"GO:0048546"},{"relation_name":"part_of","term_name":"embryonic digestive tract development","termid":"GO:0048566"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"embryonic digestive tract morphogenesis","secondary_identifiers":["GO:0048558"],"synonyms":[{"name":"embryonic gut morphogenesis","type":"broad"}],"termid":"GO:0048557"}


id: PBO:0082354
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP sulfurylase; catalyzes the primary step of intracellular sulfate activation, essential for assimilatory reduction of sulfate to sulfide, involved in methionine metabolism; human homolog PAPSS2 complements yeast null mutant","termid":"PBO:0082354"}


id: MONDO:0008570
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any thyrotoxic periodic paralysis in which the cause of the disease is a mutation in the CACNA1S gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"thyrotoxic periodic paralysis","termid":"MONDO:0019201"},{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thyrotoxic periodic paralysis, susceptibility to, 1","secondary_identifiers":["OMIM:188580","MEDGEN:413199","UMLS:C2749982"],"synonyms":[{"name":"CACNA1S thyrotoxic periodic paralysis","type":"exact"},{"name":"TTPP1","type":"related"},{"name":"thyrotoxic periodic paralysis caused by mutation in CACNA1S","type":"exact"},{"name":"thyrotoxic periodic paralysis, susceptibility to, 1","type":"exact"},{"name":"thyrotoxic periodic paralysis, susceptibility to, type 1","type":"exact"}],"termid":"MONDO:0008570","xrefs":{"Monarch":{"xref_id":"0008570"}}}


id: MONDO:0011207
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"homozygous familial hypercholesterolemia","termid":"MONDO:0018328"},{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"xanthomatosis, susceptibility to","secondary_identifiers":["MEDGEN:356066","UMLS:C1865704","OMIM:602247"],"synonyms":[{"name":"xanthomatosis, susceptibility to","type":"exact"}],"termid":"MONDO:0011207","xrefs":{"Monarch":{"xref_id":"0011207"}}}


id: GO:0060008
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized structural and/or functional features of a Sertoli cell. A Sertoli cell is a supporting cell projecting inward from the basement membrane of seminiferous tubules.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"epithelial cell differentiation","termid":"GO:0030855"},{"relation_name":"part_of","term_name":"male gonad development","termid":"GO:0008584"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Sertoli cell differentiation","termid":"GO:0060008"}


id: PBO:0074376
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMG1 pseudogene 2","termid":"PBO:0074376"}


id: MONDO:0022055
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Klippel-Feil syndrome","termid":"MONDO:0001029"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Calabro syndrome","secondary_identifiers":["MEDGEN:163240","UMLS:C0796276","GARD:8584","MESH:C537960"],"synonyms":[{"name":"craniosynostosis, limb abnormalities, brevicollis, micrognathia, pulmonary stenosis, and genital defects","type":"related"}],"termid":"MONDO:0022055","xrefs":{"Monarch":{"xref_id":"0022055"}}}


id: PBO:0012299
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"human LYAR homolog","termid":"PBO:0012299"}


id: MONDO:0018972
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare epithelial tumor of stomach (obsolete MONDO:0018972)","secondary_identifiers":["Orphanet:63443"],"synonyms":[{"name":"rare gastric epithelial tumor","type":"exact"}],"termid":"MONDO:0018972","xrefs":{"Monarch":{"xref_id":"0018972"}}}


id: GO:0034555
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 3,3'-dibromobisphenol A + 2 H+ + 2 e- = 3-monobromobisphenol A + HBr.","definition_xrefs":["UM-BBD_reactionID:r0844"],"gene_count":0,"genotype_count":0,"name":"obsolete 3,3'-dibromobisphenol A reductive dehalogenase activity (obsolete GO:0034555)","termid":"GO:0034555"}


id: PBO:0088675
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNARE Sft1","termid":"PBO:0088675"}


id: GO:0009085
data:
  {"annotated_genes":["SJAG_00869","SJAG_00502","SJAG_03312","SJAG_02388","SJAG_01574","SJAG_01955","SJAG_04688","SJAG_01630","SJAG_01061"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[64431,76993,65074,76420,96682,70495,77802,75393,113780],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019878"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of lysine, 2,6-diaminohexanoic acid.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lysine metabolic process","termid":"GO:0006553"},{"relation_name":"is_a","term_name":"aspartate family amino acid biosynthetic process","termid":"GO:0009067"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00502":null,"SJAG_00869":null,"SJAG_01061":null,"SJAG_01574":null,"SJAG_01630":null,"SJAG_01955":null,"SJAG_02388":null,"SJAG_03312":null,"SJAG_04688":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006520"],"is_obsolete":false,"name":"lysine biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:LYSINE-SYN"],"synonyms":[{"name":"lysine anabolism","type":"exact"},{"name":"lysine biosynthesis","type":"exact"},{"name":"lysine formation","type":"exact"},{"name":"lysine synthesis","type":"exact"}],"termid":"GO:0009085","terms_by_termid":{"GO:0019878":null}}


id: PBO:0114424
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ciliary microtubule inner protein 6","termid":"PBO:0114424"}


id: PBO:0067679
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 864, pseudogene","termid":"PBO:0067679"}


id: PBO:0074807
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 13 pseudogene 2","termid":"PBO:0074807"}


id: PATO:0002283
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A mobility which is relative low.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"mobile","termid":"PATO:0000299"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased mobility","termid":"PATO:0002283"}


id: PBO:0078755
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TRMT61A divergent transcript","termid":"PBO:0078755"}


id: PBO:0038311
data:
  {"annotation_feature_type":"gene","cv_name":"pubprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"canto_first_approved_date","termid":"PBO:0038311"}


id: GO:0014025
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of a thickened region of the neurectoderm that is roughly triangular in cross section. The neural keel develops from the neural plate and develops into the neural rod. Neural keel formation occurs during primary neurulation in teleosts.","definition_xrefs":["GOC:ef","GOC:dh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"neural rod formation","termid":"GO:0014023"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neural keel formation","termid":"GO:0014025"}


id: GO:1902756
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of sulfurated eukaryotic molybdenum cofactor(2-).","definition_xrefs":["GOC:dph","PMID:18258600","GO_REF:0000068","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biosynthetic process","termid":"GO:0009058"},{"relation_name":"is_a","term_name":"sulfurated eukaryotic molybdenum cofactor(2-) metabolic process","termid":"GO:1902755"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sulfurated eukaryotic molybdenum cofactor(2-) biosynthetic process","secondary_identifiers":["MetaCyc:PWY-5963"],"synonyms":[{"name":"sulfurated eukaryotic molybdenum cofactor(2-) anabolism","type":"exact"},{"name":"sulfurated eukaryotic molybdenum cofactor(2-) biosynthesis","type":"exact"},{"name":"sulfurated eukaryotic molybdenum cofactor(2-) formation","type":"exact"},{"name":"sulfurated eukaryotic molybdenum cofactor(2-) synthesis","type":"exact"}],"termid":"GO:1902756"}


id: PBO:0057548
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIR663A host gene","termid":"PBO:0057548"}


id: FYPO:0002536
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the nucleoplasm begins later than normal during a cellular response to hydrogen peroxide.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"delayed onset of protein localization to nucleoplasm","termid":"FYPO:0002532"},{"relation_name":"is_a","term_name":"abnormal protein localization to nucleoplasm during cellular response to hydrogen peroxide","termid":"FYPO:0002533"},{"relation_name":"is_a","term_name":"delayed onset of protein localization to mitotic spindle","termid":"FYPO:0003226"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000138","FYPO:0001320","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"delayed onset of protein localization to nucleoplasm during cellular response to hydrogen peroxide","synonyms":[{"name":"delayed onset of protein localisation to nucleoplasm during cellular response to hydrogen peroxide","type":"exact"},{"name":"delayed onset of protein localization to nucleoplasm during cellular response to H2O2","type":"exact"},{"name":"delayed onset of protein localization to nucleoplasm during cellular response to hydrogen peroxide during mitotic cell cycle","type":"related"},{"name":"delayed onset of protein localization to nucleoplasm during cellular response to hydrogen peroxide during vegetative growth","type":"exact"},{"name":"delayed protein localization to nucleoplasm during cellular response to hydrogen peroxide","type":"exact"}],"termid":"FYPO:0002536"}


id: MONDO:0010529
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A form of spinocerebellar degeneration characterized by onset in infancy of hypotonia, ataxia, sensorineural deafness, developmental delay, esotropia, and optic atrophy, and by a progressive course leading to death in childhood. It has been described one family with at least six affected males from five different sibships (connected through carrier females). It is transmitted as an X-linked recessive trait.","definition_xrefs":["Orphanet:85297"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"},{"relation_name":"is_a","term_name":"X-linked cerebellar ataxia","termid":"MONDO:0016612"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"X-linked spinocerebellar ataxia type 3","secondary_identifiers":["GARD:9981","MESH:C537315","OMIM:301790","DOID:0111831","SCTID:719817002","UMLS:C1844936","MEDGEN:337124","icd11.foundation:261426817"],"synonyms":[{"name":"SCAX3","type":"exact"},{"name":"Scax3","type":"related"},{"name":"X-linked ataxia-deafness syndrome","type":"exact"},{"name":"ataxia-deafness syndrome X-linked","type":"related"},{"name":"ataxia-deafness syndrome, X-linked","type":"related"},{"name":"spinocerebellar ataxia X-linked type 3","type":"related"},{"name":"spinocerebellar ataxia, X-linked 3","type":"related"},{"name":"spinocerebellar ataxia, X-linked type 3","type":"exact"}],"termid":"MONDO:0010529","xrefs":{"Monarch":{"xref_id":"0010529"}}}


id: PBO:0076491
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TCF21 antisense RNA inducing promoter demethylation","termid":"PBO:0076491"}


id: PBO:0042365
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD163 molecule like 1","termid":"PBO:0042365"}


id: PBO:0067609
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 778, pseudogene","termid":"PBO:0067609"}


id: GO:0015979
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.","definition_xrefs":["ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic process","termid":"GO:0008152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"photosynthesis","secondary_identifiers":["Wikipedia:Photosynthesis"],"termid":"GO:0015979"}


id: PBO:0081266
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 33A","termid":"PBO:0081266"}


id: GO:0003033
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which information about a lack of oxygen are received and are converted to a molecular signal by chemoreceptors in the aortic bodies.","definition_xrefs":["GOC:mtg_cardio"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detection of hypoxic conditions in blood by chemoreceptor signaling","termid":"GO:0002007"},{"relation_name":"part_of","term_name":"regulation of systemic arterial blood pressure by aortic body chemoreceptor signaling","termid":"GO:0003028"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of hypoxic conditions in blood by aortic body chemoreceptor signaling","synonyms":[{"name":"detection of hypoxic conditions in blood by aortic body chemoreceptor signalling","type":"exact"}],"termid":"GO:0003033"}


id: GO:0019538
data:
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id: MONDO:0010914
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id: GO:0033364
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id: GO:0072007
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id: PBO:0080250
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id: GO:0180005
data:
  {"annotated_genes":["SJAG_03126"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[112300],"is_not":false,"summary":null,"term":"GO:0180005"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: RNA polymerase II large subunit CTD heptapeptide repeat--phospho-L-threonine (consensus YSPTSPS)(position 4) + H2O = RNA polymerase II large subunit + phosphate.","definition_xrefs":["PMID:22622228"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II CTD heptapeptide repeat phosphatase activity","termid":"GO:0008420"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03126":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0004721"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0004721","GO:0003824","GO:0140096","GO:0016788"],"is_obsolete":false,"name":"RNA polymerase II CTD heptapeptide repeat T4 phosphatase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"RNA polymerase II C-terminal domain T4 phosphatase activity","type":"exact"}],"termid":"GO:0180005","terms_by_termid":{"GO:0180005":null}}


id: GO:0010471
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: GDP-beta-L-galactose + alpha-D-mannose 1-phosphate = GDP-alpha-D-mannose + beta-L-galactose-1-phosphate.","definition_xrefs":["RHEA:65708","PMID:17485667"],"direct_ancestors":[{"relation_name":"is_a","term_name":"guanylyltransferase activity","termid":"GO:0070568"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016779"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0016779","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"GDP-galactose:mannose-1-phosphate guanylyltransferase activity","secondary_identifiers":["MetaCyc:RXN4FS-12"],"synonyms":[{"name":"GDP-L-galactose phosphorylase activity","type":"broad"},{"name":"GDP-L-galactose:mannose-1-phosphate guanylyltransferase activity","type":"exact"}],"termid":"GO:0010471"}


id: PBO:0052152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium inwardly rectifying channel subfamily J member 2","termid":"PBO:0052152"}


id: PBO:0027360
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_1,3-beta-D-glucan_synthase_activity_during_vegetative_growth","termid":"PBO:0027360"}


id: GO:0042572
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving retinol, one of the three compounds that makes up vitamin A.","definition_xrefs":["GOC:jl","PMID:1924551"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinoid metabolic process","termid":"GO:0001523"},{"relation_name":"is_a","term_name":"primary alcohol metabolic process","termid":"GO:0034308"},{"relation_name":"is_a","term_name":"hormone metabolic process","termid":"GO:0042445"},{"relation_name":"is_a","term_name":"olefinic compound metabolic process","termid":"GO:0120254"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006629","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"retinol metabolic process","secondary_identifiers":["Wikipedia:Retinol"],"synonyms":[{"name":"retinol metabolism","type":"exact"},{"name":"vitamin A1 alcohol metabolic process","type":"exact"},{"name":"vitamin A1 alcohol metabolism","type":"exact"},{"name":"vitamin A1 metabolic process","type":"exact"},{"name":"vitamin A1 metabolism","type":"exact"}],"termid":"GO:0042572"}


id: PBO:0074604
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 11E","termid":"PBO:0074604"}


id: SO:0001781
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A variant arising in the offspring that is not found in either of the parents.","direct_ancestors":[{"relation_name":"is_a","term_name":"variant_origin","termid":"SO:0001762"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"de_novo_variant","synonyms":[{"name":"de novo variant","type":"exact"}],"termid":"SO:0001781"}


id: PBO:0000756
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-C2HC5 type","termid":"PBO:0000756"}


id: PBO:0040842
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BLK proto-oncogene, Src family tyrosine kinase","termid":"PBO:0040842"}


id: GO:1901782
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of p-cumate.","definition_xrefs":["GOC:yaf","MetaCyc:PWY-5273","GOC:TermGenie","PMID:8631713","UniPathway:UPA00937"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid catabolic process","termid":"GO:0072329"},{"relation_name":"is_a","term_name":"p-cumate metabolic process","termid":"GO:1901781"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"p-cumate catabolic process","synonyms":[{"name":"p-cumate breakdown","type":"exact"},{"name":"p-cumate catabolism","type":"exact"},{"name":"p-cumate degradation","type":"exact"}],"termid":"GO:1901782"}


id: PBO:0015654
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sequence orphan, predicted cell surface protein","termid":"PBO:0015654"}


id: PBO:0002241
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Swr1 complex subunit Swc3","termid":"PBO:0002241"}


id: PBO:0087580
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the anaphase-promoting complex/cyclosome (APC/C); which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition; required for sporulation; relocalizes to the cytosol in response to hypoxia","termid":"PBO:0087580"}


id: GO:0031031
data:
  {"annotated_genes":["SJAG_01805","SJAG_04776","SJAG_03048","SJAG_03936","SJAG_00082"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[87851,90326,94132,102705,110852],"is_not":false,"summary":null,"term":"GO:0031031"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of septation initiation signaling.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of division septum assembly","termid":"GO:0010973"},{"relation_name":"is_a","term_name":"regulation of septation initiation signaling","termid":"GO:0031029"},{"relation_name":"is_a","term_name":"positive regulation of small GTPase mediated signal transduction","termid":"GO:0051057"},{"relation_name":"positively_regulates","term_name":"septation initiation signaling","termid":"GO:0031028"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00082":null,"SJAG_01805":null,"SJAG_03048":null,"SJAG_03936":null,"SJAG_04776":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"positively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0007049","GO:0008150","GO:0044085","GO:0023052"],"is_obsolete":false,"name":"positive regulation of septation initiation signaling","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of septation initiation signaling","type":"narrow"},{"name":"positive regulation of septation initiation network","type":"exact"},{"name":"positive regulation of septation initiation signaling cascade","type":"related"},{"name":"positive regulation of septation initiation signalling","type":"exact"},{"name":"stimulation of septation initiation signaling","type":"narrow"},{"name":"up regulation of septation initiation signaling","type":"exact"},{"name":"up-regulation of septation initiation signaling","type":"exact"},{"name":"upregulation of septation initiation signaling","type":"exact"}],"termid":"GO:0031031","terms_by_termid":{"GO:0031031":null}}


id: PBO:0091486
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glcoside Hydrolase family Sixteen","termid":"PBO:0091486"}


id: PBO:0076665
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T-box transcription factor T","termid":"PBO:0076665"}


id: PBO:0038787
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenosine deaminase","termid":"PBO:0038787"}


id: PBO:0042372
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD200 like, pseudogene","termid":"PBO:0042372"}


id: PBO:0000850
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein kinase, RIO family (predicted)","termid":"PBO:0000850"}


id: PBO:0060357
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MYOCD antisense RNA 1","termid":"PBO:0060357"}


id: GO:0006022
data:
  {"annotated_genes":["SJAG_00442","SJAG_03723","SJAG_00620","SJAG_00978","SJAG_04728","SJAG_02845","SJAG_04868"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[74606,78666,72301,74781,71381,110375],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006031"},{"annotations":[67342],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006032"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving aminoglycans, any polymer containing amino groups that consists of more than about 10 monosaccharide residues joined to each other by glycosidic linkages.","definition_xrefs":["GOC:ai","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"macromolecule metabolic process","termid":"GO:0043170"},{"relation_name":"is_a","term_name":"carbohydrate derivative metabolic process","termid":"GO:1901135"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00442":null,"SJAG_00620":null,"SJAG_00978":null,"SJAG_02845":null,"SJAG_03723":null,"SJAG_04728":null,"SJAG_04868":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"aminoglycan metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000043":null,"GO_REF:0000107":null},"synonyms":[{"name":"aminoglycan metabolism","type":"exact"}],"termid":"GO:0006022","terms_by_termid":{"GO:0006031":null,"GO:0006032":null}}


id: MONDO:0000743
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An epithelial hyperplasia of the oral cavity mucosa associated with Epstein-Barr virus and found almost exclusively in persons with HIV infection. The lesion consists of a white patch that is often corrugated or hairy.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mouth disorder","termid":"MONDO:0006858"},{"relation_name":"is_a","term_name":"post-viral disorder","termid":"MONDO:0021674"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oral hairy leukoplakia","secondary_identifiers":["SCTID:414952002","ICD9:528.6","NCIT:C3722","UMLS:C0206186","MESH:D017733","ICD10CM:K13.3","MEDGEN:104797","DOID:0060315"],"synonyms":[{"name":"hairy leukoplakia","type":"related"},{"name":"hairy leukoplakia of mouth","type":"exact"},{"name":"hairy leukoplakia of oral mucosa","type":"exact"},{"name":"hairy leukoplakia of the mouth","type":"exact"},{"name":"hairy leukoplakia of the oral mucosa","type":"exact"},{"name":"mouth hairy leukoplakia","type":"exact"},{"name":"oral cavity hairy leukoplakia","type":"exact"},{"name":"oral hairy keratosis","type":"exact"}],"termid":"MONDO:0000743","xrefs":{"Monarch":{"xref_id":"0000743"}}}


id: PBO:0087067
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosomal 60S subunit protein L33A; N-terminally acetylated; rpl33a null mutant exhibits slow growth while rpl33a rpl33b double null mutant is inviable; homologous to mammalian ribosomal protein L35A, no bacterial homolog; RPL33A has a paralog, RPL33B, that arose from the whole genome duplication","termid":"PBO:0087067"}


id: PBO:0030980
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_histone_H3-K9_trimethylation_at_centromere_inner_repeat","termid":"PBO:0030980"}


id: MONDO:0013982
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant hypohidrotic ectodermal dysplasia","termid":"MONDO:0015884"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0005093"],"is_obsolete":false,"name":"ectodermal dysplasia 11A, hypohidrotic/hair/tooth type, autosomal dominant","secondary_identifiers":["MEDGEN:762105","DOID:0111653","OMIM:614940","UMLS:C3541517","GARD:18592"],"synonyms":[{"name":"ECTD11A","type":"related"},{"name":"ectodermal dysplasia 11A, hypohidrotic/hair/tooth type, autosomal dominant","type":"exact"},{"name":"ectodermal dysplasia, hypohidrotic, autosomal dominant","type":"related"}],"termid":"MONDO:0013982","xrefs":{"Monarch":{"xref_id":"0013982"}}}


id: PBO:0069610
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 887, pseudogene","termid":"PBO:0069610"}


id: GO:1903248
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of citrulline biosynthetic process.","definition_xrefs":["GOC:rl","GOC:BHF","GOC:TermGenie","PMID:19278978","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of small molecule metabolic process","termid":"GO:0062012"},{"relation_name":"is_a","term_name":"regulation of amino acid biosynthetic process","termid":"GO:2000282"},{"relation_name":"regulates","term_name":"citrulline biosynthetic process","termid":"GO:0019240"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0008150","GO:0006520","GO:0044281"],"is_obsolete":false,"name":"regulation of citrulline biosynthetic process","synonyms":[{"name":"regulation of citrulline anabolism","type":"exact"},{"name":"regulation of citrulline biosynthesis","type":"exact"},{"name":"regulation of citrulline formation","type":"exact"},{"name":"regulation of citrulline synthesis","type":"exact"}],"termid":"GO:1903248"}


id: PBO:0029549
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_level_of_nitrogen_starvation_gene_mRNA_during_vegetative_growth","termid":"PBO:0029549"}


id: GO:1902511
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of apoptotic DNA fragmentation.","definition_xrefs":["GOC:hjd","PMID:15572351","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of apoptotic DNA fragmentation","termid":"GO:1902510"},{"relation_name":"is_a","term_name":"negative regulation of DNA catabolic process","termid":"GO:1903625"},{"relation_name":"negatively_regulates","term_name":"apoptotic DNA fragmentation","termid":"GO:0006309"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0008150","GO:0006259"],"is_obsolete":false,"name":"negative regulation of apoptotic DNA fragmentation","synonyms":[{"name":"down regulation of DNA catabolic process during apoptosis","type":"exact"},{"name":"down regulation of DNA catabolism during apoptosis","type":"exact"},{"name":"down regulation of DNA fragmentation involved in apoptotic nuclear change","type":"exact"},{"name":"down regulation of apoptotic DNA fragmentation","type":"exact"},{"name":"down regulation of endonucleolytic DNA catabolic process involved in apoptosis","type":"exact"},{"name":"down-regulation of DNA catabolic process during apoptosis","type":"exact"},{"name":"down-regulation of DNA catabolism during apoptosis","type":"exact"},{"name":"down-regulation of DNA fragmentation involved in apoptotic nuclear change","type":"exact"},{"name":"down-regulation of apoptotic DNA fragmentation","type":"exact"},{"name":"down-regulation of endonucleolytic DNA catabolic process involved in apoptosis","type":"exact"},{"name":"downregulation of DNA catabolic process during apoptosis","type":"exact"},{"name":"downregulation of DNA catabolism during apoptosis","type":"exact"},{"name":"downregulation of DNA fragmentation involved in apoptotic nuclear change","type":"exact"},{"name":"downregulation of apoptotic DNA fragmentation","type":"exact"},{"name":"downregulation of endonucleolytic DNA catabolic process involved in apoptosis","type":"exact"},{"name":"inhibition of DNA catabolic process during apoptosis","type":"narrow"},{"name":"inhibition of DNA catabolism during apoptosis","type":"narrow"},{"name":"inhibition of DNA fragmentation involved in apoptotic nuclear change","type":"narrow"},{"name":"inhibition of apoptotic DNA fragmentation","type":"narrow"},{"name":"inhibition of endonucleolytic DNA catabolic process involved in apoptosis","type":"narrow"},{"name":"negative regulation of DNA catabolic process during apoptosis","type":"exact"},{"name":"negative regulation of DNA catabolism during apoptosis","type":"exact"},{"name":"negative regulation of DNA fragmentation involved in apoptotic nuclear change","type":"exact"},{"name":"negative regulation of endonucleolytic DNA catabolic process involved in apoptosis","type":"exact"}],"termid":"GO:1902511"}


id: GO:0071885
data:
  {"annotated_genes":["SJAG_01425","SJAG_00508"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[64124,77674],"is_not":false,"summary":null,"term":"GO:0071885"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine (AdoMet) to the alpha-amino group of the N-terminal amino or imino acid residue of a protein substrate. For example, yeast Tae1p and mammalian family member METTL11A preferentially modify the N-terminal residue of substrates with the N-terminal sequence X-Pro-Lys, where X can be Pro, Ala, or Ser.","definition_xrefs":["PMID:20481588"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein methyltransferase activity","termid":"GO:0008276"},{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00508":null,"SJAG_01425":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0008276"}],"interesting_parent_ids":["GO:0003824","GO:0008276","GO:0016740","GO:0003674","GO:0140096","GO:0016741"],"is_obsolete":false,"name":"N-terminal protein N-methyltransferase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000104":null},"secondary_identifiers":["EC:2.1.1.244"],"synonyms":[{"name":"X-Pro-Lys N-terminal methyltransferase","type":"narrow"}],"termid":"GO:0071885","terms_by_termid":{"GO:0071885":null}}


id: GO:0030660
data:
  {"annotated_genes":["SJAG_00192","SJAG_04070","SJAG_02160","SJAG_02482","SJAG_04002","SJAG_04569","SJAG_01809","SJAG_02234","SJAG_01508","SJAG_04517","SJAG_04391","SJAG_00379","SJAG_04474","SJAG_01025","SJAG_04565","SJAG_04609","SJAG_02282"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[62227,78094,113113,113325],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030121"},{"annotations":[58806,65651],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030130"},{"annotations":[73858,93554,78719,98772,107443,64393,80220,71238,78374],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030126"},{"annotations":[96371,98084],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030663"}]},"cv_name":"cellular_component","definition":"The lipid bilayer surrounding a vesicle associated with the Golgi apparatus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic vesicle membrane","termid":"GO:0030659"},{"relation_name":"is_a","term_name":"bounding membrane of organelle","termid":"GO:0098588"},{"relation_name":"part_of","term_name":"Golgi-associated vesicle","termid":"GO:0005798"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00192":null,"SJAG_00379":null,"SJAG_01025":null,"SJAG_01508":null,"SJAG_01809":null,"SJAG_02160":null,"SJAG_02234":null,"SJAG_02282":null,"SJAG_02482":null,"SJAG_04002":null,"SJAG_04070":null,"SJAG_04391":null,"SJAG_04474":null,"SJAG_04517":null,"SJAG_04565":null,"SJAG_04569":null,"SJAG_04609":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0005737","GO:0031410","GO:0005575"],"is_obsolete":false,"name":"Golgi-associated vesicle membrane","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"Golgi vesicle membrane","type":"related"}],"termid":"GO:0030660","terms_by_termid":{"GO:0030121":null,"GO:0030126":null,"GO:0030130":null,"GO:0030663":null}}


id: GO:0052067
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which in a symbiont interferes with or inhibits host phagocytosis by targeting phagocytic signaling or the cellular phagocytic machinery. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:23084912","PMID:29114249"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host defenses","termid":"GO:0030682"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated perturbation of host phagocytosis","secondary_identifiers":["GO:0052380","GO:0052483"],"synonyms":[{"name":"antiphagocytosis","type":"related"},{"name":"disruption of host phagocytosis","type":"exact"},{"name":"inhibition by symbiont of entry into host cell via phagocytosis","type":"narrow"},{"name":"modulation by organism of entry into host via host phagocytosis","type":"broad"},{"name":"modulation by symbiont of entry into host via phagocytosis","type":"broad"},{"name":"phagocytosis avoidance","type":"related"}],"termid":"GO:0052067"}


id: PBO:0073168
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secreted and transmembrane 1","termid":"PBO:0073168"}


id: PATO:0002484
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An angular shape quality inhering in a bearer by virtue of the bearer's having a single angle in its length giving the bearer the form of an inverted letter V.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"angular","termid":"PATO:0001977"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inverted-V shaped","synonyms":[{"name":"chevron shaped","type":"broad"}],"termid":"PATO:0002484"}


id: GO:0008463
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N-formyl-L-methionine + H2O = L-methionine + formate.","definition_xrefs":["RHEA:17781","EC:3.5.1.31"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003674","GO:0016810","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"formylmethionine deformylase activity","secondary_identifiers":["KEGG_REACTION:R00653","MetaCyc:FORMYLMETHIONINE-DEFORMYLASE-RXN"],"synonyms":[{"name":"N-formyl-L-methionine amidohydrolase activity","type":"related"}],"termid":"GO:0008463"}


id: GO:1901392
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of transforming growth factor beta1 activation.","definition_xrefs":["GOC:TermGenie","GOC:sl"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transforming growth factor beta1 activation (obsolete GO:1901392)","synonyms":[{"name":"regulation of L-TGF-beta 1 activation","type":"exact"},{"name":"regulation of TGF-beta 1 activation","type":"exact"},{"name":"regulation of TGFB1 activation","type":"exact"},{"name":"regulation of TGFbeta 1 activation","type":"exact"},{"name":"regulation of latent-TGF-beta1 activation","type":"exact"},{"name":"regulation of transforming growth factor-beta1 activation","type":"exact"}],"termid":"GO:1901392"}


id: PBO:0056581
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MCTS family member 2","termid":"PBO:0056581"}


id: GO:0047207
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: [(1->2)-beta-D-fructosyl](n) + [(1->2)-beta-D-fructosyl](m) = [(1->2)-beta-D-fructosyl](n+1) + [(1->2)-beta-D-fructosyl](m-1).","definition_xrefs":["EC:2.4.1.100","MetaCyc:2.4.1.100-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fructosyltransferase activity","termid":"GO:0050738"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016757"],"is_obsolete":false,"name":"1,2-beta-fructan 1F-fructosyltransferase activity","synonyms":[{"name":"1,2-beta-D-fructan 1(F)-fructosyltransferase activity","type":"related"},{"name":"1,2-beta-D-fructan 1F-fructosyltransferase activity","type":"related"},{"name":"1,2-beta-D-fructan:1,2-beta-D-fructan 1(F)-beta-D-fructosyltransferase activity","type":"related"},{"name":"1,2-beta-D-fructan:1,2-beta-D-fructan 1F-beta-D-fructosyltransferase activity","type":"related"},{"name":"1,2-beta-fructan 1(F)-fructosyltransferase activity","type":"related"},{"name":"2,1-beta-D-fructan:2,1-beta-D-fructan 1-beta-D-fructosyltransferase activity","type":"related"},{"name":"2,1-fructan:2,1-fructan 1-fructosyltransferase activity","type":"related"},{"name":"FFT activity","type":"related"},{"name":"fructan:fructan fructosyl transferase activity","type":"related"}],"termid":"GO:0047207"}


id: PBO:0086973
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Regulatory subunit of protein phosphatase 1 (Glc7p); involved in glycogen metabolism and chromosome segregation; proposed to regulate Glc7p activity via conformational alteration; ortholog of the mammalian protein phosphatase inhibitor 2; protein abundance increases in response to DNA replication stress","termid":"PBO:0086973"}


id: GO:0009151
data:
  {"annotated_genes":["SJAG_04487"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[99310],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035863"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving purine deoxyribonucleotide, a compound consisting of deoxyribonucleoside (a purine base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.","definition_xrefs":["ISBN:0198506732","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleotide metabolic process","termid":"GO:0006163"},{"relation_name":"is_a","term_name":"2'-deoxyribonucleotide metabolic process","termid":"GO:0009394"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04487":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"purine deoxyribonucleotide metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"purine deoxyribonucleotide metabolism","type":"exact"}],"termid":"GO:0009151","terms_by_termid":{"GO:0035863":null}}


id: GO:0010399
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving the alternating alpha-(1->2)-linked rhamnose and alpha-(1->2)-linked B-galacturonic acid residues of the rhamnogalacturonan I backbone.","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rhamnogalacturonan I metabolic process","termid":"GO:0010395"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0071554"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0005975","GO:0071554","GO:0008150"],"is_obsolete":false,"name":"rhamnogalacturonan I backbone metabolic process","synonyms":[{"name":"rhamnogalacturonan I backbone metabolism","type":"exact"}],"termid":"GO:0010399"}


id: MONDO:0012025
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any branchiootic syndrome in which the cause of the disease is a mutation in the SIX1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"branchiootic syndrome","termid":"MONDO:0018878"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"branchiootic syndrome 3","secondary_identifiers":["MEDGEN:333995","MESH:C564248","OMIM:608389","UMLS:C1842124","GARD:15430"],"synonyms":[{"name":"BOS3","type":"related"},{"name":"SIX1 branchiootic syndrome","type":"exact"},{"name":"bo syndrome 3","type":"related"},{"name":"branchiootic syndrome 3","type":"exact"},{"name":"branchiootic syndrome caused by mutation in SIX1","type":"exact"},{"name":"branchiootic syndrome type 3","type":"exact"}],"termid":"MONDO:0012025","xrefs":{"Monarch":{"xref_id":"0012025"}}}


id: GO:0099167
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the postsynaptic specialization membrane of a symmetric synapse consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.","definition_xrefs":["GOC:dos"],"gene_count":0,"genotype_count":0,"name":"obsolete integral component of postsynaptic specialization membrane of symmetric synapse (obsolete GO:0099167)","termid":"GO:0099167"}


id: GO:2001030
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of cellular glucuronidation.","definition_xrefs":["GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of cellular glucuronidation (obsolete GO:2001030)","synonyms":[{"name":"negative regulation of cellular glucuronide biosynthesis","type":"exact"},{"name":"negative regulation of cellular glucuronide biosynthetic process","type":"exact"},{"name":"negative regulation of cellular glucuronoside biosynthesis","type":"exact"},{"name":"negative regulation of cellular glucuronoside biosynthetic process","type":"exact"}],"termid":"GO:2001030"}


id: GO:0043486
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The replacement, within chromatin, of resident histones or histone subunits with alternative, sometimes variant, histones or subunits.","definition_xrefs":["PMID:15066277","PMID:11735001","GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete histone exchange (obsolete GO:0043486)","synonyms":[{"name":"histone chaperone","type":"related"},{"name":"histone replacement","type":"exact"}],"termid":"GO:0043486"}


id: FYPO:0003284
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of copper ions into a cell occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal copper import","termid":"FYPO:0003283"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000138","FYPO:0001320","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"decreased copper import","synonyms":[{"name":"decreased cellular copper import","type":"exact"},{"name":"decreased copper cation import","type":"exact"},{"name":"decreased copper import during mitotic cell cycle","type":"related"},{"name":"decreased copper import during vegetative growth","type":"exact"},{"name":"decreased copper import into cell","type":"exact"},{"name":"decreased copper ion import","type":"exact"},{"name":"decreased copper ion import across plasma membrane","type":"exact"},{"name":"reduced copper import","type":"exact"}],"termid":"FYPO:0003284"}


id: PBO:0027169
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_regulation_of_DNA_replication_initiation","termid":"PBO:0027169"}


id: GO:0044383
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information, occurring within a host cell.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host intracellular organelle","termid":"GO:0033647"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host chromosome","termid":"GO:0044383"}


id: GO:0098524
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A neuromuscular junction in which the target muscle cell is a somatic muscle myotube, such as an arthropod somatic muscle cell.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuromuscular junction of myotube","termid":"GO:0098523"},{"relation_name":"is_a","term_name":"neuromuscular junction of somatic muscle","termid":"GO:0098527"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"neuromuscular junction of somatic muscle myotube","termid":"GO:0098524"}


id: GO:0036412
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acetyl-CoA + oxalate = acetate + oxalyl-CoA.","definition_xrefs":["PMID:23935849","GOC:imk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CoA-transferase activity","termid":"GO:0008410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016782"}],"interesting_parent_ids":["GO:0003824","GO:0016782","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"acetyl-CoA:oxalate CoA-transferase","secondary_identifiers":["RHEA:37883"],"termid":"GO:0036412"}


id: GO:0060007
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A vestibular reflex by which a response to a linear acceleration stimulus begins with an afferent nerve impulse from a receptor in the otolith and ends with the compensatory action of eye muscles. Signaling never reaches a level of consciousness.","definition_xrefs":["GOC:dph","PMID:11784757"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vestibular reflex","termid":"GO:0060005"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"linear vestibuloocular reflex","termid":"GO:0060007"}


id: PBO:0035971
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_premeiotic_DNA_replication_during_azygotic_meiotic_cell_cycle","termid":"PBO:0035971"}


id: MONDO:0017353
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Neonatal glycine encephalopathy is a frequent, usually severe form of glycine encephalopathy (GE) characterized by coma, apnea, hypotonia, seizure and myoclonic jerks in the neonatal period, and subsequent developmental delay.","definition_xrefs":["Orphanet:289857"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycine encephalopathy","termid":"MONDO:0011612"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004736"],"is_obsolete":false,"name":"neonatal glycine encephalopathy","secondary_identifiers":["GARD:17332","MEDGEN:1785446","NANDO:1200985","UMLS:C5548200","icd11.foundation:414151121"],"synonyms":[{"name":"classic glycine encephalopathy","type":"exact"},{"name":"neonatal NKH","type":"exact"},{"name":"neonatal non-ketotic hyperglycinemia","type":"exact"}],"termid":"MONDO:0017353","xrefs":{"Monarch":{"xref_id":"0017353"}}}


id: PBO:0083399
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps ORF ULP2/YIL031W","termid":"PBO:0083399"}


id: MONDO:0013289
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal agammaglobulinemia in which the cause of the disease is a mutation in the BLNK gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal agammaglobulinemia","termid":"MONDO:0011096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"agammaglobulinemia 4, autosomal recessive","secondary_identifiers":["GARD:15674","MEDGEN:462102","OMIM:613502","UMLS:C3150752","DOID:0060027"],"synonyms":[{"name":"AGM4","type":"exact"},{"name":"B cell linker protein deficiency","type":"exact"},{"name":"B-cell linker protein deficiency","type":"exact"},{"name":"BLNK autosomal agammaglobulinemia","type":"exact"},{"name":"BLNK deficiency","type":"exact"},{"name":"agammaglobulinemia 4","type":"exact"},{"name":"agammaglobulinemia 4, autosomal recessive","type":"exact"},{"name":"agammaglobulinemia, autosomal recessive, due to Blnk defect","type":"exact"},{"name":"autosomal agammaglobulinemia caused by mutation in BLNK","type":"exact"}],"termid":"MONDO:0013289","xrefs":{"Monarch":{"xref_id":"0013289"}}}


id: GO:0061668
data:
  {"annotated_genes":["SJAG_00231","SJAG_03773","SJAG_03155"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[101610,108705,112323],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1902775"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of the mitochondrial ribosome and of its subunits.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribosome assembly","termid":"GO:0042255"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00231":null,"SJAG_03155":null,"SJAG_03773":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0042254"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0042254"],"is_obsolete":false,"name":"mitochondrial ribosome assembly","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0061668","terms_by_termid":{"GO:1902775":null}}


id: PBO:0051070
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy diversity 5-12","termid":"PBO:0051070"}


id: PBO:0068897
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 139, pseudogene","termid":"PBO:0068897"}


id: PBO:0067284
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 366, pseudogene","termid":"PBO:0067284"}


id: PBO:0083265
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; not conserved in closely related Saccharomyces species; 69% of ORF overlaps the uncharacterized ORF YKL075C","termid":"PBO:0083265"}


id: PBO:0049306
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutathione S-transferase omega 1","termid":"PBO:0049306"}


id: GO:0070003
data:
  {"annotated_genes":["SJAG_04969","SJAG_01612","SJAG_01014","SJAG_05351","SJAG_03316","SJAG_03151"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[78895,73997],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036374"},{"annotations":[56991,61415,61819,74647],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004298"}]},"cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidase activity","termid":"GO:0008233"}],"gene_count":6,"genes_by_uniquename":{"SJAG_01014":null,"SJAG_01612":null,"SJAG_03151":null,"SJAG_03316":null,"SJAG_04969":null,"SJAG_05351":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008233"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0008233","GO:0003824","GO:0140096"],"is_obsolete":false,"name":"threonine-type peptidase activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000043":null},"termid":"GO:0070003","terms_by_termid":{"GO:0004298":null,"GO:0036374":null}}


id: MONDO:0004632
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. An obsolete term referring to Hodgkin lymphoma.","definition_xrefs":["NCIT:C6914"],"gene_count":0,"genotype_count":0,"name":"obsolete Hodgkin's granuloma (obsolete MONDO:0004632)","secondary_identifiers":["ICD9:201.6","ICD9:201.9","ICD9:201.1","NCIT:C6913","DOID:8651","ICD9:201.4","ICDO:9661/3","ICD9:201","ICD9:201.0","NCIT:C3517","SCTID:118610003","NCIT:C26956","SCTID:118607005","SCTID:118602004","SCTID:118609008","ICD9:201.2","ICD9:201.7"],"synonyms":[{"name":"Hodgkin granuloma","type":"exact"},{"name":"Hodgkin's granuloma","type":"exact"},{"name":"Hodgkin's granuloma of unspecified site","type":"exact"},{"name":"Hodgkin's granuloma, unspecified site, extranodal and solid organ sites","type":"exact"}],"termid":"MONDO:0004632","xrefs":{"Monarch":{"xref_id":"0004632"}}}


id: MONDO:0010037
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sodium-potassium-ATPase activity of red cell","secondary_identifiers":["MEDGEN:376532","OMIM:270425","UMLS:C1849169"],"synonyms":[{"name":"sodium pump sites, number of","type":"related"},{"name":"sodium-potassium-ATPase activity of red cell","type":"exact"}],"termid":"MONDO:0010037","xrefs":{"Monarch":{"xref_id":"0010037"}}}


id: GO:0140922
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of thermomorphogenesis.","definition_xrefs":["PMID:27250752"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of post-embryonic development","termid":"GO:0048582"},{"relation_name":"is_a","term_name":"positive regulation of response to stimulus","termid":"GO:0048584"},{"relation_name":"is_a","term_name":"regulation of thermomorphogenesis","termid":"GO:0140920"},{"relation_name":"positively_regulates","term_name":"thermomorphogenesis","termid":"GO:0140919"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of thermomorphogenesis","termid":"GO:0140922"}


id: GO:2000425
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of apoptotic cell clearance.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of phagocytosis","termid":"GO:0050764"},{"relation_name":"regulates","term_name":"apoptotic cell clearance","termid":"GO:0043277"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0016192"],"is_obsolete":false,"name":"regulation of apoptotic cell clearance","synonyms":[{"name":"regulation of apoptotic cell removal","type":"exact"},{"name":"regulation of efferocytosis","type":"exact"},{"name":"regulation of programmed cell clearance","type":"exact"}],"termid":"GO:2000425"}


id: PBO:0077623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thymosin beta 15B","termid":"PBO:0077623"}


id: GO:0006910
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The initial step in phagocytosis involving adhesion to bacteria, immune complexes and other particulate matter, or an apoptotic cell and based on recognition of factors such as bacterial cell wall components, opsonins like complement and antibody or protein receptors and lipids like phosphatidyl serine, and leading to intracellular signaling in the phagocytosing cell.","definition_xrefs":["GOC:curators","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell recognition","termid":"GO:0008037"},{"relation_name":"part_of","term_name":"phagocytosis","termid":"GO:0006909"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0016192"],"is_obsolete":false,"name":"phagocytosis, recognition","synonyms":[{"name":"recognition of phagocytosed substance by phagocytic cell","type":"exact"}],"termid":"GO:0006910"}


id: GO:1902495
data:
  {"annotated_genes":["SJAG_00601","SJAG_00836","SJAG_00985","SJAG_00976","SJAG_04675","SJAG_00133","SJAG_02504","SJAG_00212","SJAG_00542","SJAG_05629","SJAG_03406","SJAG_07006","SJAG_MIT04","SJAG_03962","SJAG_MIT13","SJAG_01397","SJAG_02105","SJAG_02646","SJAG_01447","SJAG_04015","SJAG_04677","SJAG_MIT15","SJAG_MIT09","SJAG_07003","SJAG_02023","SJAG_01077","SJAG_00136","SJAG_07007","SJAG_01913","SJAG_01817","SJAG_01490","SJAG_03925","SJAG_03490","SJAG_00516","SJAG_MIT37","SJAG_01763","SJAG_05204","SJAG_05229","SJAG_02598","SJAG_01471","SJAG_03114","SJAG_04122","SJAG_00755","SJAG_MIT20","SJAG_00915","SJAG_MIT03","SJAG_02564","SJAG_02782","SJAG_04955","SJAG_00438","SJAG_05294","SJAG_01190","SJAG_03337","SJAG_01355","SJAG_00080"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[78000,78241],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033573"},{"annotations":[67127,119402,65237,57849,60039,64001,108218,116173,119397,103997,57295,66805,95169,119391,64505,60502,67458],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045259"},{"annotations":[72430,76012,76165,104393,119387,74046,113732,61892,118012],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045275"},{"annotations":[115787,114555,119360,119410,68195,89545,74630,119382,72358,114987,108604],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045277"},{"annotations":[90484,100266,92373,95972,96154,104225,62007],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000220"},{"annotations":[88355,71556,110196,99235,96932,102989,119057,60645],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000221"},{"annotations":[74795],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005891"}]},"cv_name":"cellular_component","definition":"A transmembrane protein complex which enables the transfer of a substance from one side of a membrane to the other.","definition_xrefs":["GOC:TermGenie","GOC:bhm","PMID:18024586"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane protein complex","termid":"GO:0098796"},{"relation_name":"is_a","term_name":"transporter complex","termid":"GO:1990351"}],"gene_count":55,"genes_by_uniquename":{"SJAG_00080":null,"SJAG_00133":null,"SJAG_00136":null,"SJAG_00212":null,"SJAG_00438":null,"SJAG_00516":null,"SJAG_00542":null,"SJAG_00601":null,"SJAG_00755":null,"SJAG_00836":null,"SJAG_00915":null,"SJAG_00976":null,"SJAG_00985":null,"SJAG_01077":null,"SJAG_01190":null,"SJAG_01355":null,"SJAG_01397":null,"SJAG_01447":null,"SJAG_01471":null,"SJAG_01490":null,"SJAG_01763":null,"SJAG_01817":null,"SJAG_01913":null,"SJAG_02023":null,"SJAG_02105":null,"SJAG_02504":null,"SJAG_02564":null,"SJAG_02598":null,"SJAG_02646":null,"SJAG_02782":null,"SJAG_03114":null,"SJAG_03337":null,"SJAG_03406":null,"SJAG_03490":null,"SJAG_03925":null,"SJAG_03962":null,"SJAG_04015":null,"SJAG_04122":null,"SJAG_04675":null,"SJAG_04677":null,"SJAG_04955":null,"SJAG_05204":null,"SJAG_05229":null,"SJAG_05294":null,"SJAG_05629":null,"SJAG_07003":null,"SJAG_07006":null,"SJAG_07007":null,"SJAG_MIT03":null,"SJAG_MIT04":null,"SJAG_MIT09":null,"SJAG_MIT13":null,"SJAG_MIT15":null,"SJAG_MIT20":null,"SJAG_MIT37":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"transmembrane transporter complex","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000043":null,"GO_REF:0000107":null},"termid":"GO:1902495","terms_by_termid":{"GO:0000220":null,"GO:0000221":null,"GO:0005891":null,"GO:0033573":null,"GO:0045259":null,"GO:0045275":null,"GO:0045277":null}}


id: GO:0120020
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Removes cholesterol from a membrane or a monolayer lipid particle, transports it through the aqueous phase while protected in a hydrophobic pocket, and brings it to an acceptor membrane or lipid particle.","definition_xrefs":["PMID:20823909","PMID:24220498","GOC:krc","PMID:25797198"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sterol transfer activity","termid":"GO:0120015"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0120013"}],"interesting_parent_ids":["GO:0120013","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"cholesterol transfer activity","secondary_identifiers":["Reactome:R-HSA-265443","Reactome:R-HSA-216723","Reactome:R-HSA-265545","Reactome:R-HSA-266082","Reactome:R-HSA-8951850","Reactome:R-HSA-1454928","GO:0017127","Reactome:R-HSA-5682111"],"synonyms":[{"name":"cholesterol carrier activity","type":"exact"},{"name":"cholesterol transporter activity","type":"broad"},{"name":"intermembrane cholesterol transfer activity","type":"narrow"}],"termid":"GO:0120020"}


id: PBO:0057527
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 644a","termid":"PBO:0057527"}


id: GO:0031844
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type 4 neuropeptide Y receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuropeptide Y receptor binding","termid":"GO:0031841"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"type 4 neuropeptide Y receptor binding","synonyms":[{"name":"pancreatic polypeptide receptor binding","type":"exact"},{"name":"type 4 neuropeptide Y receptor ligand","type":"narrow"}],"termid":"GO:0031844"}


id: MONDO:0004668
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A parasitic infection that is caused by liver flukes, usually Fasciola hepatica, of sheep, goats, and cattle. Humans become infected by eating uncooked, infested aquatic vegetation (classically watercress). adult flukes inhabit the bile ducts, gallbladder, and occasionally ectopic sites. Symptoms arise secondary to inflammatory response or obstruction.","definition_xrefs":["NCIT:C128387"],"direct_ancestors":[{"relation_name":"is_a","term_name":"helminthiasis","termid":"MONDO:0004664"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fascioliasis","secondary_identifiers":["ICD9:121.3","icd11.foundation:656408831","MEDGEN:41969","SCTID:82308007","UMLS:C0015652","DOID:885","EFO:1001324","ICD10CM:B66.3","MESH:D005211"],"synonyms":[{"name":"Fasciolosis","type":"exact"},{"name":"fasciola hepatica infection","type":"exact"},{"name":"infection by fasciola","type":"exact"},{"name":"liver flukes","type":"exact"},{"name":"sheep liver fluke infection","type":"exact"}],"termid":"MONDO:0004668","xrefs":{"Monarch":{"xref_id":"0004668"}}}


id: MONDO:0007922
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Lymphedema - distichiasis is a rare syndromic lymphedema disorder characterized by lower-limb lymphedema and varying degrees of abnormal growth of eyelashes from the orifices of the Meibomian glands (distichiasis), with occasional associated manifestations.","definition_xrefs":["Orphanet:33001"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete eyebrow/eyelashes distichiasis (obsolete MONDO:0020190)","termid":"MONDO:0020190"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"lymphatic malformation","termid":"MONDO:0019313"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"lymphedema-distichiasis syndrome","secondary_identifiers":["GARD:333","OMIM:153400","NORD:1383","NCIT:C128191","DOID:0111509","UMLS:C0265345","MESH:C537710","ICD9:743.63","ICD10CM:Q82.0","MEDGEN:75566","SCTID:8634009"],"synonyms":[{"name":"hereditary lymphedema-distichiasis syndrome (subtype)","type":"related"},{"name":"lymphedema with distichiasis","type":"related"},{"name":"lymphedema-distichiasis syndrome","type":"exact"},{"name":"lymphedema-distichiasis syndrome with renal disease and diabetes mellitus","type":"related"}],"termid":"MONDO:0007922","xrefs":{"Monarch":{"xref_id":"0007922"}}}


id: PATO:0002365
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"Female quality of having complete, unaltered reproductive organs","definition_xrefs":["PATOC:MF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"female","termid":"PATO:0000383"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intact female","termid":"PATO:0002365"}


id: GO:0000401
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a DNA segment containing the open form of a four-way junction, also known as a Holliday junction, a structure where two DNA double strands are held together by reciprocal exchange of two of the four strands, one strand each from the two original helices. The open form of a four-way junction can be diagrammed without any of the strands crossing over.","definition_xrefs":["ISBN:0815332181","PMID:15563464","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"four-way junction DNA binding","termid":"GO:0000400"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003677"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003677","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"open form four-way junction DNA binding","synonyms":[{"name":"open form Holliday junction binding","type":"exact"}],"termid":"GO:0000401"}


id: GO:0044592
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of pullulan stimulus.","definition_xrefs":["GOC:mengo_curators","GOC:tt"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to carbohydrate","termid":"GO:0009743"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to pullulan","termid":"GO:0044592"}


id: GO:1904714
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of chaperone-mediated autophagy.","definition_xrefs":["GOC:PARL","GO_REF:0000058","GOC:pad","PMID:20176123","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of autophagy","termid":"GO:0010506"},{"relation_name":"is_a","term_name":"regulation of protein catabolic process","termid":"GO:0042176"},{"relation_name":"regulates","term_name":"chaperone-mediated autophagy","termid":"GO:0061684"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006914"},{"rel_name":"regulates","termid":"GO:0030163"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0030163","GO:0008150","GO:0006914"],"is_obsolete":false,"name":"regulation of chaperone-mediated autophagy","synonyms":[{"name":"regulation of CMA","type":"related"}],"termid":"GO:1904714"}


id: SO:0001544
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A transcript processing variant whereby the process of editing is disrupted with respect to the reference.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcript_processing_variant","termid":"SO:0001543"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"editing_variant","synonyms":[{"name":"editing variant","type":"exact"}],"termid":"SO:0001544"}


id: GO:0043935
data:
  {"annotated_genes":["SJAG_00974","SJAG_00993","SJAG_00826","SJAG_02241","SJAG_03090","SJAG_01769","SJAG_03013","SJAG_01531","SJAG_04275","SJAG_04859","SJAG_04781","SJAG_03057","SJAG_04080","SJAG_03536","SJAG_03746","SJAG_02712","SJAG_01017","SJAG_00486","SJAG_04901","SJAG_04140","SJAG_02248","SJAG_00821","SJAG_04238","SJAG_04853","SJAG_00663","SJAG_04470","SJAG_02320","SJAG_01321","SJAG_03557","SJAG_04868","SJAG_00971","SJAG_04922","SJAG_00114","SJAG_01483","SJAG_03250","SJAG_04010","SJAG_01662","SJAG_03587","SJAG_04271","SJAG_05309","SJAG_04483","SJAG_02529","SJAG_04236","SJAG_00405","SJAG_02169","SJAG_02718","SJAG_03915","SJAG_04615","SJAG_04184","SJAG_03483","SJAG_03688"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96841,105448,111839,113041,97259,101051],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030437"},{"annotations":[94341,111644],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071998"},{"annotations":[94787],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0034413"},{"annotations":[88531,89025,92093,90572],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0030476"},{"annotations":[73411],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0034412"},{"annotations":[104487,118118,114411,109395,118110],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0070591"},{"annotations":[73412,91824,105300],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0031321"},{"annotations":[102029,105614,97876,110441,91614,99150,107703,119166,95696,119348,118865,100226,97913,114259],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0032120"},{"annotations":[103238,114260,108035,100159,104445,92614,100158,107158,97192,97877],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0031322"},{"annotations":[111528],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0075297"},{"annotations":[102610],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0075296"},{"annotations":[91052],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1903024"},{"annotations":[92511],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0034307"},{"annotations":[100161,116300,100160,100443,94828,106341],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0070583"}]},"cv_name":"biological_process","definition":"The formation of spores derived from the products of meiosis. A cellular spore is a cell form that can be used for dissemination, for survival of adverse conditions because of its heat and desiccation resistance, and/or for reproduction.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sporulation resulting in formation of a cellular spore","termid":"GO:0030435"},{"relation_name":"is_a","term_name":"sexual sporulation","termid":"GO:0034293"}],"gene_count":51,"genes_by_uniquename":{"SJAG_00114":null,"SJAG_00405":null,"SJAG_00486":null,"SJAG_00663":null,"SJAG_00821":null,"SJAG_00826":null,"SJAG_00971":null,"SJAG_00974":null,"SJAG_00993":null,"SJAG_01017":null,"SJAG_01321":null,"SJAG_01483":null,"SJAG_01531":null,"SJAG_01662":null,"SJAG_01769":null,"SJAG_02169":null,"SJAG_02241":null,"SJAG_02248":null,"SJAG_02320":null,"SJAG_02529":null,"SJAG_02712":null,"SJAG_02718":null,"SJAG_03013":null,"SJAG_03057":null,"SJAG_03090":null,"SJAG_03250":null,"SJAG_03483":null,"SJAG_03536":null,"SJAG_03557":null,"SJAG_03587":null,"SJAG_03688":null,"SJAG_03746":null,"SJAG_03915":null,"SJAG_04010":null,"SJAG_04080":null,"SJAG_04140":null,"SJAG_04184":null,"SJAG_04236":null,"SJAG_04238":null,"SJAG_04271":null,"SJAG_04275":null,"SJAG_04470":null,"SJAG_04483":null,"SJAG_04615":null,"SJAG_04781":null,"SJAG_04853":null,"SJAG_04859":null,"SJAG_04868":null,"SJAG_04901":null,"SJAG_04922":null,"SJAG_05309":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"sexual sporulation resulting in formation of a cellular spore","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0043935","terms_by_termid":{"GO:0030437":null,"GO:0030476":null,"GO:0031321":null,"GO:0031322":null,"GO:0032120":null,"GO:0034307":null,"GO:0034412":null,"GO:0034413":null,"GO:0070583":null,"GO:0070591":null,"GO:0071998":null,"GO:0075296":null,"GO:0075297":null,"GO:1903024":null}}


id: PATO:0000829
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000829 absolute visual ability value (obsolete PATO:0000829)","termid":"PATO:0000829"}


id: PBO:0000123
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"expressed during meiosis","termid":"PBO:0000123"}


id: SO:0001889
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A feature amplification of a region containing a transcript.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"feature_amplification","termid":"SO:0001880"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcript_amplification","secondary_identifiers":["http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences"],"synonyms":[{"name":"VEP:transcript_amplification","type":"exact"},{"name":"transcript amplification","type":"exact"}],"termid":"SO:0001889"}


id: PBO:0036498
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"snoRNA biogenesis protein Bcd1 (predicted)","termid":"PBO:0036498"}


id: PR:G2TRN9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC11D3.11c gene.","definition_xrefs":["PRO:DNx","UniProtKB:G2TRN9"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized transcriptional regulatory protein C11D3.11c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC11D3.11c","synonyms":[{"name":"Spom972h-SPAC11D3.11c","type":"exact"}],"termid":"PR:G2TRN9"}


id: PBO:0046474
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ELKS/RAB6-interacting/CAST family member 2","termid":"PBO:0046474"}


id: PR:O74486
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- wtf19 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74486"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein wtf19 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1906.03","synonyms":[{"name":"Spom972h-wtf19","type":"exact"}],"termid":"PR:O74486"}


id: GO:1990464
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a (2R)-2-hydroxycarboxylate + a quinone = a 2-oxocarboxylate + a quinol.","definition_xrefs":["PMID:3013300","PMID:4582730","RHEA:11272"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor","termid":"GO:0016901"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"D-2-hydroxyacid dehydrogenase (quinone) activity","secondary_identifiers":["EC:1.1.5.10","MetaCyc:RXN-14931"],"synonyms":[{"name":"(R)-2-hydroxy acid dehydrogenase activity","type":"related"},{"name":"(R)-2-hydroxy-acid:(acceptor) 2-oxidoreductase activity","type":"related"},{"name":"(R)-2-hydroxyacid:quinone oxidoreductase activity","type":"related"},{"name":"D-lactate dehydrogenase (quinone) activity","type":"related"},{"name":"D-lactate dehydrogenase activity","type":"related"},{"name":"D-lactate:quinone oxidoreductase activity","type":"related"}],"termid":"GO:1990464"}


id: PBO:0049781
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HLA complex group 15","termid":"PBO:0049781"}


id: PR:Q9Y794
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An origin recognition complex subunit 4 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12087:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"origin recognition complex subunit 4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP23A10.13","secondary_identifiers":["UniProtKB:Q9Y794"],"synonyms":[{"name":"SPBP23A10.13","type":"related"},{"name":"Spom972h-ORC4","type":"exact"},{"name":"orp4","type":"related"}],"termid":"PR:Q9Y794"}


id: PBO:0058298
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4672","termid":"PBO:0058298"}


id: GO:0042488
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the formation and development of teeth, the hard, bony appendages that are borne on the jaws, or on other bones in the walls of the mouth or pharynx of most vertebrates.","definition_xrefs":["GOC:jl","PMID:15355794"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of odontogenesis","termid":"GO:0042482"},{"relation_name":"is_a","term_name":"regulation of odontogenesis of dentin-containing tooth","termid":"GO:0042487"},{"relation_name":"positively_regulates","term_name":"odontogenesis of dentin-containing tooth","termid":"GO:0042475"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of odontogenesis of dentin-containing tooth","synonyms":[{"name":"activation of odontogenesis","type":"broad"},{"name":"positive regulation of odontogenesis of dentine-containing teeth","type":"exact"},{"name":"positive regulation of odontogenesis of dentine-containing tooth","type":"related"},{"name":"stimulation of odontogenesis","type":"broad"},{"name":"up regulation of odontogenesis","type":"broad"},{"name":"up-regulation of odontogenesis","type":"broad"},{"name":"upregulation of odontogenesis","type":"broad"}],"termid":"GO:0042488"}


id: MONDO:0014595
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any early infantile epileptic encephalopathy in which the cause of the disease is a mutation in the SIK1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"infantile spasms","termid":"MONDO:0018097"},{"relation_name":"is_a","term_name":"early myoclonic encephalopathy","termid":"MONDO:0016022"},{"relation_name":"is_a","term_name":"developmental and epileptic encephalopathy","termid":"MONDO:0100062"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"},{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092","MONDO:0005027"],"is_obsolete":false,"name":"developmental and epileptic encephalopathy, 30","secondary_identifiers":["DOID:0080465","GARD:16093","MEDGEN:898954","OMIM:616341","UMLS:C4225360"],"synonyms":[{"name":"DEE30","type":"exact"},{"name":"EIEE30","type":"exact"},{"name":"SIK1 early infantile epileptic encephalopathy","type":"exact"},{"name":"developmental and epileptic encephalopathy 30","type":"exact"},{"name":"early infantile epileptic encephalopathy caused by mutation in SIK1","type":"exact"},{"name":"epileptic encephalopathy, early infantile, 30","type":"exact"},{"name":"epileptic encephalopathy, early infantile, type 30","type":"exact"}],"termid":"MONDO:0014595","xrefs":{"Monarch":{"xref_id":"0014595"}}}


id: FYPO:0008342
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of one or more transfer RNAs measured in a cell is lower than normal. Total tRNA or a specific tRNA may be affected.","direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level during vegetative growth","termid":"FYPO:0001117"},{"relation_name":"is_a","term_name":"altered tRNA or precursor level during vegetative growth","termid":"FYPO:0008101"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0006551","FYPO:0001985","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"decreased pre-tRNA or mature level during vegetative growth","termid":"FYPO:0008342"}


id: GO:0043529
data:
  {"annotated_genes":["SJAG_01940","SJAG_01178","SJAG_01240"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[73175,75380,114456],"is_not":false,"summary":null,"term":"GO:0043529"}]},"cv_name":"cellular_component","definition":"An endoplasmic reticulum protein-containing complex that is conserved in eukaryotics and that mediates the insertion of tail-anchored proteins into the ER membrane. In yeast, includes Get1p, Get2p and Get3p proteins.","definition_xrefs":["GOC:vw","PMID:16269340","PMID:18724936","PMID:32910895","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endoplasmic reticulum protein-containing complex","termid":"GO:0140534"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01178":null,"SJAG_01240":null,"SJAG_01940":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005783"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005783","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"GET complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0043529","terms_by_termid":{"GO:0043529":null}}


id: PBO:0079202
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TSPY like 6","termid":"PBO:0079202"}


id: PBO:0059875
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myotubularin related protein 12","termid":"PBO:0059875"}


id: MONDO:0012980
data:
  {"annotated_genes":["SJAG_02712","SJAG_03557"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85794,85795],"is_not":false,"summary":null,"term":"MONDO:0012980"}]},"cv_name":"mondo","definition":"Endocrine-cerebro-osteodysplasia (ECO) syndrome is characterized by various anomalies of the endocrine, cerebral, and skeletal systems resulting in neonatal mortality.","definition_xrefs":["Orphanet:199332"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"skeletal system disorder","termid":"MONDO:0005172"},{"relation_name":"is_a","term_name":"hereditary lethal multiple congenital anomalies/dysmorphic syndrome","termid":"MONDO:0043009"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02712":null,"SJAG_03557":null},"genotype_count":0,"is_obsolete":false,"name":"endocrine-cerebro-osteodysplasia syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C2675227","GARD:17094","DOID:0060641","OMIM:612651","MESH:C567210","MEDGEN:390740","icd11.foundation:413985102","SCTID:723309006"],"synonyms":[{"name":"ECO","type":"related"},{"name":"ECO syndrome","type":"exact"},{"name":"endocrine-CEREBROOSTEODYSPLASIA","type":"related"}],"termid":"MONDO:0012980","terms_by_termid":{"MONDO:0012980":null},"xrefs":{"Monarch":{"xref_id":"0012980"}}}


id: PBO:0066559
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulator of G protein signaling 22","termid":"PBO:0066559"}


id: MONDO:0014686
data:
  {"annotated_genes":["SJAG_02237"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85430],"is_not":false,"summary":null,"term":"MONDO:0014686"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"reproductive system disorder","termid":"MONDO:0005039"},{"relation_name":"is_a","term_name":"endocrine system disorder","termid":"MONDO:0005151"},{"relation_name":"is_a","term_name":"primordial dwarfism and slender bone disorder","termid":"MONDO:0800063"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02237":null},"genotype_count":0,"is_obsolete":false,"name":"short stature, microcephaly, and endocrine dysfunction","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:616541","UMLS:C4225288","GARD:18483","MEDGEN:895448"],"synonyms":[{"name":"SSMED","type":"related"},{"name":"short stature, microcephaly, and endocrine dysfunction","type":"exact"}],"termid":"MONDO:0014686","terms_by_termid":{"MONDO:0014686":null},"xrefs":{"Monarch":{"xref_id":"0014686"}}}


id: PBO:0077184
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"toll like receptor 8","termid":"PBO:0077184"}


id: PBO:0059683
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO1 pseudogene 49","termid":"PBO:0059683"}


id: PBO:0044968
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dehydrogenase/reductase X-linked","termid":"PBO:0044968"}


id: _global:never_in_taxon
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"never_in_taxon","secondary_identifiers":["RO:0002161"],"termid":"_global:never_in_taxon","xrefs":{"Monarch":{"xref_id":"never_in_taxon"}}}


id: PBO:0057289
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 509-1","termid":"PBO:0057289"}


id: SO:0002242
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene which codes for 25S_rRNA, which functions as a component of the large subunit of the ribosome in some eukaryotes.","direct_ancestors":[{"relation_name":"is_a","term_name":"cytosolic_LSU_rRNA_gene","termid":"SO:0002361"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytosolic_rRNA_25S_gene","synonyms":[{"name":"25S rRNA gene","type":"exact"},{"name":"25S_rRNA_gene","type":"exact"}],"termid":"SO:0002242"}


id: PBO:0002422
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribonucleoside reductase large subunit Cdc22","termid":"PBO:0002422"}


id: PBO:0067067
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 93, pseudogene","termid":"PBO:0067067"}


id: PBO:0091685
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translated non-conserved ORF in low complexity region","termid":"PBO:0091685"}


id: PBO:0081129
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZFP1 zinc finger protein","termid":"PBO:0081129"}


id: PBO:0038497
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP binding cassette subfamily C member 6 pseudogene 1","termid":"PBO:0038497"}


id: MONDO:0012841
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inflammatory bowel disease that has material basis in variation in the chromosome region 5p13.1.","definition_xrefs":["DOID:0110888","PMID:17447842"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inflammatory bowel disease","termid":"MONDO:0005265"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0004335"],"is_obsolete":false,"name":"inflammatory bowel disease 18","secondary_identifiers":["MESH:C567377","UMLS:C2677090","OMIM:612262","MEDGEN:393655"],"synonyms":[{"name":"IBD18","type":"exact"},{"name":"inflammatory bowel disease 18","type":"exact"},{"name":"inflammatory bowel disease type 18","type":"exact"}],"termid":"MONDO:0012841","xrefs":{"Monarch":{"xref_id":"0012841"}}}


id: GO:0045005
data:
  {"annotated_genes":["SJAG_02610","SJAG_01410","SJAG_02039","SJAG_03300","SJAG_02299","SJAG_05372","SJAG_03997","SJAG_01044","SJAG_05180","SJAG_02465","SJAG_06022","SJAG_00935","SJAG_00727","SJAG_03898","SJAG_01584","SJAG_01185","SJAG_01677","SJAG_04855","SJAG_02822","SJAG_03728","SJAG_04183","SJAG_01374","SJAG_03843","SJAG_01832","SJAG_02992","SJAG_00573","SJAG_02439","SJAG_02698","SJAG_02818","SJAG_00623","SJAG_01572","SJAG_01076","SJAG_05237","SJAG_01644","SJAG_04971","SJAG_03780","SJAG_04671","SJAG_00247","SJAG_00177","SJAG_01221","SJAG_04272","SJAG_02294","SJAG_02724","SJAG_02198","SJAG_05012","SJAG_03097","SJAG_02079","SJAG_02908","SJAG_02214"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[113070,97471],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902298"},{"annotations":[74511,75357],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045004"},{"annotations":[109448,112088],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990505"},{"annotations":[98567,108072,117133,108048,109879,91275,99270,96334,64359,95397,112848,96499,109404,95154,89490],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990426"},{"annotations":[106460,89322,116746],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0120292"},{"annotations":[103547],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1902681"},{"annotations":[108839,106960,99683,103548],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0011000"},{"annotations":[99684,102597,115356],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031582"},{"annotations":[99685],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090001"},{"annotations":[102598],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071807"},{"annotations":[70052,79850,100974,117437,94933,101495,97820,79513,106066,117775,99605,106961,108467],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031297"},{"annotations":[112852,75937],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071932"},{"annotations":[98443],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1990516"},{"annotations":[99385,117135,96501,97009,99272,89493,110291,89921,115846,109881,91861,114614],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0120290"}]},"cv_name":"biological_process","definition":"A DNA metabolic process that prevents or corrects errors to ensure that DNA is replicated accurately. Errors can be corrected either by intrinsic DNA polymerase proofreading activity or via mismatch repair.","definition_xrefs":["GOC:mah","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA metabolic process","termid":"GO:0006259"},{"relation_name":"part_of","term_name":"DNA-templated DNA replication","termid":"GO:0006261"}],"gene_count":49,"genes_by_uniquename":{"SJAG_00177":null,"SJAG_00247":null,"SJAG_00573":null,"SJAG_00623":null,"SJAG_00727":null,"SJAG_00935":null,"SJAG_01044":null,"SJAG_01076":null,"SJAG_01185":null,"SJAG_01221":null,"SJAG_01374":null,"SJAG_01410":null,"SJAG_01572":null,"SJAG_01584":null,"SJAG_01644":null,"SJAG_01677":null,"SJAG_01832":null,"SJAG_02039":null,"SJAG_02079":null,"SJAG_02198":null,"SJAG_02214":null,"SJAG_02294":null,"SJAG_02299":null,"SJAG_02439":null,"SJAG_02465":null,"SJAG_02610":null,"SJAG_02698":null,"SJAG_02724":null,"SJAG_02818":null,"SJAG_02822":null,"SJAG_02908":null,"SJAG_02992":null,"SJAG_03097":null,"SJAG_03300":null,"SJAG_03728":null,"SJAG_03780":null,"SJAG_03843":null,"SJAG_03898":null,"SJAG_03997":null,"SJAG_04183":null,"SJAG_04272":null,"SJAG_04671":null,"SJAG_04855":null,"SJAG_04971":null,"SJAG_05012":null,"SJAG_05180":null,"SJAG_05237":null,"SJAG_05372":null,"SJAG_06022":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006260"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006259","GO:0006260","GO:0008150"],"is_obsolete":false,"name":"DNA-templated DNA replication maintenance of fidelity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"DNA-dependent DNA replication maintenance of fidelity","type":"exact"},{"name":"maintenance of fidelity during DNA-dependent DNA replication","type":"related"},{"name":"maintenance of fidelity involved in DNA-dependent DNA replication","type":"exact"}],"termid":"GO:0045005","terms_by_termid":{"GO:0011000":null,"GO:0031297":null,"GO:0031582":null,"GO:0045004":null,"GO:0071807":null,"GO:0071932":null,"GO:0090001":null,"GO:0120290":null,"GO:0120292":null,"GO:1902298":null,"GO:1902681":null,"GO:1990426":null,"GO:1990505":null,"GO:1990516":null}}


id: PBO:0028624
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_ribonucleoprotein_complex_assembly","termid":"PBO:0028624"}


id: GO:0071306
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin E stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to vitamin E","termid":"GO:0033197"},{"relation_name":"is_a","term_name":"cellular response to vitamin","termid":"GO:0071295"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to vitamin E","synonyms":[{"name":"cellular response to DL-alpha-tocopherol acetate","type":"narrow"},{"name":"cellular response to DL-alpha-tocopheryl acetate","type":"narrow"},{"name":"cellular response to O-Acetyl-alpha-tocopherol","type":"narrow"}],"termid":"GO:0071306"}


id: FYPO:0006536
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cell periphery is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to cell periphery during vegetative growth","termid":"FYPO:0005570"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000138","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"increased protein localization to cell periphery during vegetative growth","synonyms":[{"name":"increased protein localisation to cell periphery during vegetative growth","type":"exact"},{"name":"increased protein localization to cell periphery during mitotic cell cycle","type":"related"}],"termid":"FYPO:0006536"}


id: MONDO:0019801
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Acute adrenal insufficiency (AAI) is a rare but severe condition caused by a sudden defective production of adrenal steroids (cortisol and aldosterone). It represents an emergency, thus the rapid recognition and prompt therapy are critical for survival even before the diagnosis is made.","definition_xrefs":["Orphanet:95409"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary adrenal insufficiency","termid":"MONDO:0015128"},{"relation_name":"is_a","term_name":"acute disease","termid":"MONDO:0020683"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acute adrenal insufficiency","secondary_identifiers":["ICD9:255.41","NCIT:C112840","UMLS:C0151467","SCTID:24867002","MEDGEN:56227","GARD:19257","icd11.foundation:114442391"],"synonyms":[{"name":"Addisonian crisis","type":"exact"},{"name":"acute adrenal failure","type":"exact"},{"name":"acute adrenocortical insufficiency","type":"exact"},{"name":"adrenal crisis","type":"exact"},{"name":"adrenocortical crisis","type":"exact"}],"termid":"MONDO:0019801","xrefs":{"Monarch":{"xref_id":"0019801"}}}


id: MONDO:0006707
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete MONDO:0006707 (obsolete MONDO:0006707)","termid":"MONDO:0006707","xrefs":{"Monarch":{"xref_id":"0006707"}}}


id: GO:0051670
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the endohydrolysis of 2,1-beta-D-fructosidic linkages in inulin.","definition_xrefs":["EC:3.2.1.7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016798","GO:0016787"],"is_obsolete":false,"name":"inulinase activity","secondary_identifiers":["MetaCyc:3.2.1.7-RXN"],"synonyms":[{"name":"2,1-beta-D-fructan fructanohydrolase activity","type":"exact"},{"name":"endo-inulinase activity","type":"exact"},{"name":"exoinulinase activity","type":"exact"},{"name":"indoinulinase activity","type":"exact"},{"name":"inulase activity","type":"exact"}],"termid":"GO:0051670"}


id: GO:0032786
data:
  {"annotated_genes":["SJAG_01213","SJAG_01149","SJAG_03967","SJAG_02057","SJAG_03061","SJAG_00150","SJAG_01151","SJAG_03118"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[70620,80099],"is_not":false,"summary":null,"term":"GO:0032786"},{"annotations":[71883,117325,78404,79909,106373,71338],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032968"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides catalyzed by a DNA-dependent RNA polymerase.","definition_xrefs":["GOC:txnOH","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of DNA-templated transcription elongation","termid":"GO:0032784"},{"relation_name":"is_a","term_name":"positive regulation of DNA-templated transcription","termid":"GO:0045893"},{"relation_name":"positively_regulates","term_name":"DNA-templated transcription elongation","termid":"GO:0006354"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00150":null,"SJAG_01149":null,"SJAG_01151":null,"SJAG_01213":null,"SJAG_02057":null,"SJAG_03061":null,"SJAG_03118":null,"SJAG_03967":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006355"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006351"},{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0006355","GO:0008150","GO:0010467","GO:0006351"],"is_obsolete":false,"name":"positive regulation of DNA-templated transcription, elongation","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"activation of RNA elongation","type":"broad"},{"name":"positive regulation of DNA-dependent transcription, elongation","type":"exact"},{"name":"positive regulation of transcription elongation","type":"broad"},{"name":"positive regulation of transcription elongation, DNA-dependent","type":"exact"},{"name":"positive regulation of transcriptional elongation","type":"broad"},{"name":"positive transcription elongation regulator activity","type":"related"},{"name":"stimulation of RNA elongation","type":"broad"},{"name":"up regulation of RNA elongation","type":"broad"},{"name":"up-regulation of RNA elongation","type":"broad"},{"name":"upregulation of RNA elongation","type":"broad"}],"termid":"GO:0032786","terms_by_termid":{"GO:0032786":null,"GO:0032968":null}}


id: FYPO:0008150
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of RNA derived from rDNA intergenic repeat regions is higher than normal.","direct_ancestors":[{"relation_name":"is_a","term_name":"increased non functional ncRNA level","termid":"FYPO:0008149"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0006551","FYPO:0001985","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"increased rDNA intergenic repeat RNA level","synonyms":[{"name":"increased transcript level at rDNA intergenic region","type":"exact"}],"termid":"FYPO:0008150"}


id: GO:0016507
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A multienzyme complex possessing three activities in two subunits (alpha and beta) that catalyzes three steps of the fatty acid beta-oxidation cycle within the mitochondrial matrix. The alpha subunit comprises the enoyl-CoA hydratase (ECH) and 3-hydroxyacyl-CoA dehydrogenase (HACD) activities, and the beta subunit contains the acetyl-CoA C-acyltransferase (KACT)/thiolase activity.","definition_xrefs":["GOC:sjm","PMID:29915090"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid beta-oxidation multienzyme complex","termid":"GO:0036125"},{"relation_name":"is_a","term_name":"mitochondrial protein-containing complex","termid":"GO:0098798"},{"relation_name":"part_of","term_name":"mitochondrial matrix","termid":"GO:0005759"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005739"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0032991","GO:0005739"],"is_obsolete":false,"name":"mitochondrial fatty acid beta-oxidation multienzyme complex","synonyms":[{"name":"fatty acid beta-oxidation multienzyme complex","type":"broad"},{"name":"trifunctional enzyme","type":"related"}],"termid":"GO:0016507"}


id: GO:0039710
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The assembly of an icosahedral viral capsid in the cytoplasm. Often occurs by assembling around the viral genome.","definition_xrefs":["VZ:1950"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic capsid assembly","termid":"GO:0039709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cytoplasmic icosahedral capsid assembly","termid":"GO:0039710"}


id: GO:1902499
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein autoubiquitination.","definition_xrefs":["PMID:24069405","GOC:TermGenie","GOC:rb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein ubiquitination","termid":"GO:0031398"},{"relation_name":"is_a","term_name":"regulation of protein autoubiquitination","termid":"GO:1902498"},{"relation_name":"positively_regulates","term_name":"protein autoubiquitination","termid":"GO:0051865"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0070647"},{"rel_name":"positively_regulates","termid":"GO:0070647"}],"interesting_parent_ids":["GO:0008150","GO:0070647"],"is_obsolete":false,"name":"positive regulation of protein autoubiquitination","synonyms":[{"name":"activation of protein auto-ubiquitination","type":"narrow"},{"name":"activation of protein auto-ubiquitinylation","type":"narrow"},{"name":"activation of protein autoubiquitination","type":"narrow"},{"name":"activation of protein autoubiquitinylation","type":"narrow"},{"name":"activation of protein self-ubiquitination","type":"narrow"},{"name":"activation of protein self-ubiquitinylation","type":"narrow"},{"name":"positive regulation of protein auto-ubiquitination","type":"exact"},{"name":"positive regulation of protein auto-ubiquitinylation","type":"exact"},{"name":"positive regulation of protein autoubiquitinylation","type":"exact"},{"name":"positive regulation of protein self-ubiquitination","type":"exact"},{"name":"positive regulation of protein self-ubiquitinylation","type":"exact"},{"name":"up regulation of protein auto-ubiquitination","type":"exact"},{"name":"up regulation of protein auto-ubiquitinylation","type":"exact"},{"name":"up regulation of protein autoubiquitination","type":"exact"},{"name":"up regulation of protein autoubiquitinylation","type":"exact"},{"name":"up regulation of protein self-ubiquitination","type":"exact"},{"name":"up regulation of protein self-ubiquitinylation","type":"exact"},{"name":"up-regulation of protein auto-ubiquitination","type":"exact"},{"name":"up-regulation of protein auto-ubiquitinylation","type":"exact"},{"name":"up-regulation of protein autoubiquitination","type":"exact"},{"name":"up-regulation of protein autoubiquitinylation","type":"exact"},{"name":"up-regulation of protein self-ubiquitination","type":"exact"},{"name":"up-regulation of protein self-ubiquitinylation","type":"exact"},{"name":"upregulation of protein auto-ubiquitination","type":"exact"},{"name":"upregulation of protein auto-ubiquitinylation","type":"exact"},{"name":"upregulation of protein autoubiquitination","type":"exact"},{"name":"upregulation of protein autoubiquitinylation","type":"exact"},{"name":"upregulation of protein self-ubiquitination","type":"exact"},{"name":"upregulation of protein self-ubiquitinylation","type":"exact"}],"termid":"GO:1902499"}


id: PBO:0054091
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1444","termid":"PBO:0054091"}


id: PBO:0016527
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HECT-type ubiquitin-protein ligase E3 (predicted)","termid":"PBO:0016527"}


id: PBO:0041566
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 20 open reading frame 96","termid":"PBO:0041566"}


id: PBO:0070450
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L3 pseudogene 7","termid":"PBO:0070450"}


id: PBO:0078810
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Asn (anticodon GTT) 27-1","termid":"PBO:0078810"}


id: PBO:0017450
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-overlaps","termid":"PBO:0017450"}


id: MONDO:1011798
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"musculoskeletal system disorder, non-human animal","termid":"MONDO:1011335"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"forelimb-girdle muscular anomaly, non-human animal","secondary_identifiers":["OMIA:001442"],"termid":"MONDO:1011798","xrefs":{"Monarch":{"xref_id":"1011798"}}}


id: GO:0000149
data:
  {"annotated_genes":["SJAG_03536","SJAG_00072","SJAG_05345","SJAG_04978","SJAG_00826","SJAG_03963","SJAG_01309","SJAG_03848","SJAG_02241","SJAG_05344","SJAG_04023","SJAG_01697","SJAG_02349","SJAG_01748","SJAG_03403","SJAG_02811","SJAG_01925","SJAG_04909","SJAG_03499"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71704,72347,74012,75024,75370,75990,76485,76530,76757,76820,78045,78754],"is_not":false,"summary":null,"term":"GO:0000149"},{"annotations":[78345,70117,76716,79967,70320,75658,76902],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019905"}]},"cv_name":"molecular_function","definition":"Binding to a SNARE (soluble N-ethylmaleimide-sensitive factor attached protein receptor) protein.","definition_xrefs":["PMID:12642621"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":19,"genes_by_uniquename":{"SJAG_00072":null,"SJAG_00826":null,"SJAG_01309":null,"SJAG_01697":null,"SJAG_01748":null,"SJAG_01925":null,"SJAG_02241":null,"SJAG_02349":null,"SJAG_02811":null,"SJAG_03403":null,"SJAG_03499":null,"SJAG_03536":null,"SJAG_03848":null,"SJAG_03963":null,"SJAG_04023":null,"SJAG_04909":null,"SJAG_04978":null,"SJAG_05344":null,"SJAG_05345":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"SNARE binding","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-888589","Reactome:R-HSA-917744","Reactome:R-HSA-376364","Reactome:R-HSA-380905","Reactome:R-HSA-376369","Reactome:R-HSA-210426","Reactome:R-HSA-376357","Reactome:R-HSA-380574","Reactome:R-HSA-380901","Reactome:R-HSA-372505","Reactome:R-HSA-374922","Reactome:R-HSA-265166","Reactome:R-HSA-210430","Reactome:R-HSA-380869","Reactome:R-HSA-9023173","Reactome:R-HSA-372529","Reactome:R-HSA-374899"],"synonyms":[{"name":"SNAP receptor binding","type":"exact"}],"termid":"GO:0000149","terms_by_termid":{"GO:0000149":null,"GO:0019905":null}}


id: PBO:0027648
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-viable_swollen_spheroid_vegetative_cell","termid":"PBO:0027648"}


id: PBO:0114871
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar sorting protein Vps3844","termid":"PBO:0114871"}


id: PBO:0077235
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane and coiled-coil domain family 1 pseudogene 1","termid":"PBO:0077235"}


id: PBO:0039985
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor like GTPase 6","termid":"PBO:0039985"}


id: PBO:0034318
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-receives_input_from","termid":"PBO:0034318"}


id: GO:0050656
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to 3'-phosphoadenosine 5'-phosphosulfate (PAPS), a naturally occurring mixed anhydride. It is an intermediate in the formation of a variety of sulfo compounds in biological systems.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenyl ribonucleotide binding","termid":"GO:0032559"},{"relation_name":"is_a","term_name":"anion binding","termid":"GO:0043168"},{"relation_name":"is_a","term_name":"sulfur compound binding","termid":"GO:1901681"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"3'-phosphoadenosine 5'-phosphosulfate binding","synonyms":[{"name":"3'-phosphoadenosine 5'-phosphosulphate binding","type":"exact"},{"name":"3'-phosphoadenylyl-sulfate binding","type":"exact"},{"name":"PAPS binding","type":"exact"},{"name":"adenosine 3'-phosphate 5'-phosphosulfate binding","type":"exact"},{"name":"phosphoadenosine phosphosulfate binding","type":"exact"}],"termid":"GO:0050656"}


id: PBO:0003765
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-directed RNA polymerase I complex subunit Rpa34 (predicted)","termid":"PBO:0003765"}


id: PBO:0080336
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 100 pseudogene","termid":"PBO:0080336"}


id: MONDO:0016377
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pitt-Hopkins-like syndrome is a rare, genetic, syndromic intellectual disability disorder characterized by severe intellectual disability, lack of speech with normal, or mildly delayed, motor development, episodic breathing abnormalities, early-onset seizures and facial dysmorphism which only includes a wide mouth. Abnormal sleep-wake cycles, autistic behavior and stereotypic movements are commonly associated.","definition_xrefs":["GARD:0011967"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"excluded_subClassOf","term_name":"monogenic epilepsy","termid":"MONDO:0015653"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pitt-Hopkins-like syndrome","secondary_identifiers":["UMLS:C4751168","Orphanet:221150","MEDGEN:1648432","GARD:11967"],"synonyms":[{"name":"PTHSL","type":"exact"}],"termid":"MONDO:0016377","xrefs":{"Monarch":{"xref_id":"0016377"}}}


id: MONDO:0004464
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A metaplastic lesion of the urothelium found in the urethra. It is characterized by the presence of aggregates of cuboidal or hobnail cells and represents a reaction of the urothelium to injury caused by instrumentation, surgery or calculi.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"benign urethral neoplasm","termid":"MONDO:0004177"},{"relation_name":"is_a","term_name":"nephrogenic adenoma","termid":"MONDO:0004191"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"nephrogenic adenoma of the urethra","secondary_identifiers":["MEDGEN:277847","DOID:8109","UMLS:C1336889","NCIT:C7416"],"synonyms":[{"name":"nephrogenic adenoma of urethra","type":"exact"},{"name":"urethra nephrogenic adenoma","type":"exact"},{"name":"urethral nephrogenic adenoma","type":"exact"}],"termid":"MONDO:0004464","xrefs":{"Monarch":{"xref_id":"0004464"}}}


id: GO:0051430
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a corticotropin-releasing hormone receptor 1 (CRHR1). CRHR1 is the major subtype in the pituitary corticotroph, and mediates the stimulatory actions of corticotropin-releasing hormone on corticotropin hormone secretion. CRHR1 are also located in cortical areas of the brain, cerebellum and limbic system.","definition_xrefs":["PMID:15134857"],"direct_ancestors":[{"relation_name":"is_a","term_name":"corticotropin-releasing hormone receptor binding","termid":"GO:0051429"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"corticotropin-releasing hormone receptor 1 binding","secondary_identifiers":["GO:0031743"],"synonyms":[{"name":"CRHR1 binding","type":"exact"},{"name":"type 1 corticotropin releasing factor receptor binding","type":"exact"},{"name":"type 1 corticotropin releasing factor receptor ligand","type":"narrow"},{"name":"type 1 corticotropin-releasing factor receptor binding","type":"exact"}],"termid":"GO:0051430"}


id: PR:000036298
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A ribonucleoside-diphosphate reductase large subunit that is encoded in the genome of Schizosaccharomyces pombe.","definition_xrefs":["PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribonucleoside-diphosphate reductase large chain (Schizosaccharomyces pombe)","pombase_gene_id":"SPAC1F7.05","synonyms":[{"name":"Spom-cdc22","type":"exact"}],"termid":"PR:000036298"}


id: PBO:0055813
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lipin 1","termid":"PBO:0055813"}


id: MONDO:0002612
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A localization-related (focal) form of epilepsy characterized by seizures which arise in the frontal lobe. A variety of clinical syndromes exist depending on the exact location of the seizure focus. Frontal lobe seizures may be idiopathic (cryptogenic) or caused by an identifiable disease process such as traumatic injuries, neoplasms, or other macroscopic or microscopic lesions of the frontal lobes (symptomatic frontal lobe seizures). (From Adams et al., Principles of Neurology, 6th ed, pp318-9)","definition_xrefs":["MESH:D017034"],"direct_ancestors":[{"relation_name":"is_a","term_name":"focal epilepsy","termid":"MONDO:0005384"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"frontal lobe epilepsy","secondary_identifiers":["DOID:3331","SCTID:230394006","MEDGEN:39074","UMLS:C0085541"],"synonyms":[{"name":"epilepsy of frontal lobe","type":"exact"},{"name":"frontal lobe epilepsy","type":"exact"}],"termid":"MONDO:0002612","xrefs":{"Monarch":{"xref_id":"0002612"}}}


id: GO:0031000
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a caffeine stimulus. Caffeine is an alkaloid found in numerous plant species, where it acts as a natural pesticide that paralyzes and kills certain insects feeding upon them.","definition_xrefs":["GOC:ef","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to purine-containing compound","termid":"GO:0014074"},{"relation_name":"is_a","term_name":"response to alkaloid","termid":"GO:0043279"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to caffeine","termid":"GO:0031000"}


id: PBO:0018258
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"the misfolded product of the Parkinson-linked allele L169P is degraded by the proteasome","termid":"PBO:0018258"}


id: PBO:0000744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F0-ATPase subunit J (predicted)","termid":"PBO:0000744"}


id: PBO:0060779
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit B9 pseudogene 1","termid":"PBO:0060779"}


id: FYPO:0002170
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce a cell that is elongated and branched (and septated), and undergoes two or more rounds of cell division and then dies.","definition_xrefs":["PomBase:mah","PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable after spore germination, multiple cell divisions, elongated cell","termid":"FYPO:0002262"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000005"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000005","FYPO:0000002","FYPO:0000004"],"is_obsolete":false,"name":"inviable after spore germination, multiple cell divisions, branched, elongated cell","synonyms":[{"name":"inviable after spore germination, multiple cell divisions, elongated and branched cell","type":"exact"},{"name":"inviable following spore germination, multiple cell divisions, branched, elongated cell","type":"exact"},{"name":"inviable germinated spore, multiple cell divisions, branched, elongated cell","type":"exact"},{"name":"lethal after spore germination, multiple cell divisions, branched, elongated cell","type":"exact"}],"termid":"FYPO:0002170"}


id: PBO:0063275
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protocadherin gamma subfamily A, 1","termid":"PBO:0063275"}


id: GO:1901718
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in regulation of dipeptide transmembrane transport.","definition_xrefs":["GOC:TermGenie","GOC:vw"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of dipeptide transmembrane transport by regulation of transcription from RNA polymerase II promoter (obsolete GO:1901718)","termid":"GO:1901718"}


id: GO:0052778
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving diacetylchitobiose, the N,N'-diacetylated derivative of chitobiose.","definition_xrefs":["PMID:22797760"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino disaccharide metabolic process","termid":"GO:0052779"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"diacetylchitobiose metabolic process","synonyms":[{"name":"diacetylchitobiose metabolism","type":"exact"}],"termid":"GO:0052778"}


id: MONDO:0017073
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"myelomeningocele","termid":"MONDO:0019773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"cervical spina bifida cystica","secondary_identifiers":["GARD:20962","Orphanet:268762"],"termid":"MONDO:0017073","xrefs":{"Monarch":{"xref_id":"0017073"}}}


id: PBO:0079339
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis-specific transcript, Y-linked 23B","termid":"PBO:0079339"}


id: PBO:0087523
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of inner ring of nuclear pore complex (NPC); contributes to NPC assembly and nucleocytoplasmic transport; interacts with genomic regions that contain ribosomal protein and subtelomeric genes, where it functions in nucleosome positioning and as a repressor of transcription; both Nup170p and Nup157p are similar to human Nup155p; NUP170 has a paralog, NUP157, that arose from the whole genome duplication","termid":"PBO:0087523"}


id: MONDO:0006790
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A regressive change of teeth characterized by excessive development of secondary cementum on the tooth surface. It may occur on any part of the root, but the apical two-thirds are most commonly affected. (Dorland, 27th ed)","definition_xrefs":["MESH:D006936"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tooth hard tissue disease","termid":"MONDO:0002220"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypercementosis","secondary_identifiers":["SCTID:78537008","ICD9:521.5","ICD10CM:K03.4","MedDRA:10020596","DOID:12733","EFO:1000970","MEDGEN:9360","UMLS:C0020441"],"synonyms":[{"name":"cementation hyperplasia","type":"exact"}],"termid":"MONDO:0006790","xrefs":{"Monarch":{"xref_id":"0006790"}}}


id: GO:0051479
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of mannosylglycerate, a very common compatible solute in thermophilic and hyperthermophilic organisms.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate biosynthetic process","termid":"GO:0016051"},{"relation_name":"is_a","term_name":"glycoside biosynthetic process","termid":"GO:0016138"},{"relation_name":"is_a","term_name":"carboxylic acid biosynthetic process","termid":"GO:0046394"},{"relation_name":"is_a","term_name":"mannosylglycerate metabolic process","termid":"GO:0051478"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0005975"],"is_obsolete":false,"name":"mannosylglycerate biosynthetic process","synonyms":[{"name":"mannosylglycerate anabolism","type":"exact"},{"name":"mannosylglycerate biosynthesis","type":"exact"},{"name":"mannosylglycerate formation","type":"exact"},{"name":"mannosylglycerate synthesis","type":"exact"}],"termid":"GO:0051479"}


id: PBO:0113061
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the EKC/KEOPS protein complex; EKC/KEOPS complex is required for t6A tRNA modification and telomeric TG1-3 recombination; may have role in transcription; other complex members are Kae1p, Gon7p, Bud32p, and Cgi121p; ortholog of human LAGE3","termid":"PBO:0113061"}


id: PBO:0059980
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND3 pseudogene 25","termid":"PBO:0059980"}


id: PATO:0001020
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality inhering in a bearer by virtue of whether the bearer has been harmed or injured or spoiled.","definition_xrefs":["WordNet:WordNet"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structure","termid":"PATO:0000141"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"damage","termid":"PATO:0001020"}


id: MOD:00548
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative","definition_xrefs":["Unimod:195","PubMed:15283597"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isotope tagged reagent derivatized residue","termid":"MOD:01426"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"APTA-d0","synonyms":[{"name":"APTA-d0","type":"related"},{"name":"QAT","type":"related"}],"termid":"MOD:00548"}


id: PBO:0071792
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribonuclease P/MRP subunit p38","termid":"PBO:0071792"}


id: GO:0039536
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the RIG-I signaling pathway.","definition_xrefs":["GOC:jl","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytoplasmic pattern recognition receptor signaling pathway","termid":"GO:0039532"},{"relation_name":"is_a","term_name":"regulation of RIG-I signaling pathway","termid":"GO:0039535"},{"relation_name":"negatively_regulates","term_name":"RIG-I signaling pathway","termid":"GO:0039529"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of RIG-I signaling pathway","synonyms":[{"name":"negative regulation of DDX58 signaling pathway","type":"exact"},{"name":"negative regulation of RIG-I signalling pathway","type":"exact"},{"name":"negative regulation of retinoic acid inducible gene I signaling pathway","type":"exact"}],"termid":"GO:0039536"}


id: GO:0050426
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: H2O + peptidyl-glycinamide = glycinamide + peptide. Cleavage of C-terminal glycinamide from a polypeptide.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-glycinamidase activity (obsolete GO:0050426)","synonyms":[{"name":"peptidyl-glycinamidase activity","type":"exact"}],"termid":"GO:0050426"}


id: PBO:0059143
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mannose phosphate isomerase","termid":"PBO:0059143"}


id: FYECO:0000407
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which benzamidine was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ benzamidine","synonyms":[{"name":"benzamidine added","type":"exact"}],"termid":"FYECO:0000407"}


id: MONDO:0001012
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete breast fibroadenosis (obsolete MONDO:0001012)","secondary_identifiers":["ICD10CM:N60.2","ICD9:610.2","SCTID:23260002","DOID:10352"],"synonyms":[{"name":"fibroadenosis - breast","type":"exact"},{"name":"fibroadenosis of breast","type":"exact"}],"termid":"MONDO:0001012","xrefs":{"Monarch":{"xref_id":"0001012"}}}


id: PR:O14219
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC6B12.14c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14219"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C6B12.14c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6B12.14c","synonyms":[{"name":"Spom972h-SPAC6B12.14c","type":"exact"}],"termid":"PR:O14219"}


id: GO:0072234
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of a metanephric nephron tubule over time, from its initial formation to the mature structure. A metanephric nephron tubule is an epithelial tube that is part of the metanephric nephron, the functional part of the metanephros.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephron tubule development","termid":"GO:0072080"},{"relation_name":"is_a","term_name":"metanephric tubule development","termid":"GO:0072170"},{"relation_name":"is_a","term_name":"metanephric nephron epithelium development","termid":"GO:0072243"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric nephron tubule development","termid":"GO:0072234"}


id: MONDO:0020722
data:
  {"annotated_genes":["SJAG_02463","SJAG_01941"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86820,86821],"is_not":false,"summary":null,"term":"MONDO:0020722"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"},{"relation_name":"is_a","term_name":"nephrolithiasis, calcium oxalate","termid":"MONDO:0957318"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01941":null,"SJAG_02463":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"nephrolithiasis susceptibility caused by SLC26A1","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5779632","DOID:0080652","OMIM:167030","MEDGEN:1830325"],"synonyms":[{"name":"CAON","type":"related"},{"name":"nephrolithiasis, calcium oxalate","type":"related"},{"name":"urolithiasis, calcium oxalate","type":"related"}],"termid":"MONDO:0020722","terms_by_termid":{"MONDO:0020722":null},"xrefs":{"Monarch":{"xref_id":"0020722"}}}


id: MONDO:1012870
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any heart disorder characterized by pathologically prolonged ventricular action potential duration that occurs in rabbits due to a mutation in the KCNE1 gene created by genetic engineering or gene editing.","definition_xrefs":["PMID:27076034"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"},{"relation_name":"is_a","term_name":"heart disorder, non-human animal","termid":"MONDO:1012982"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long QT syndrome, KCNE1-related, rabbit","secondary_identifiers":["OMIA:002334-9986"],"termid":"MONDO:1012870","xrefs":{"Monarch":{"xref_id":"1012870"}}}


id: PBO:0012609
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"20S proteasome complex subunit alpha 2, Pre8 (predicted)","termid":"PBO:0012609"}


id: SO:0000884
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A stop codon redefined to be the new amino acid, pyrrolysine.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"stop_codon_read_through","termid":"SO:0000883"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stop_codon_redefined_as_pyrrolysine","synonyms":[{"name":"stop codon redefined as pyrrolysine","type":"exact"}],"termid":"SO:0000884"}


id: GO:0000502
data:
  {"annotated_genes":["SJAG_00128","SJAG_04969","SJAG_04306","SJAG_01489","SJAG_03151","SJAG_02502","SJAG_04088","SJAG_01544","SJAG_04144","SJAG_00762","SJAG_00778","SJAG_00808","SJAG_01014","SJAG_02341","SJAG_04357","SJAG_02900","SJAG_04888","SJAG_02562","SJAG_01652","SJAG_04541","SJAG_04211","SJAG_03321","SJAG_04484","SJAG_00738","SJAG_00766","SJAG_04229","SJAG_04477","SJAG_00712","SJAG_03733","SJAG_01131","SJAG_04572","SJAG_02992","SJAG_05316","SJAG_03638","SJAG_01203","SJAG_03408"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[110660],"is_not":false,"summary":null,"term":"GO:0000502"},{"annotations":[78697,72860,70144,72260,73283,75481,75729],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0019773"},{"annotations":[57446,63673,64480,69835,61418,56994,61820],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0019774"},{"annotations":[78278,80177,73972,79900,73438,79454,77391,78460,78735],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0008540"},{"annotations":[71730,78499,99269,73903,74572,79670,76787,73149,111558,115486,74585,62618,71625],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0008541"}]},"cv_name":"cellular_component","definition":"A large multisubunit complex which catalyzes protein degradation, found in eukaryotes, archaea and some bacteria. In eukaryotes, this complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core.","definition_xrefs":["GOC:rb","Wikipedia:Proteasome"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein-containing complex","termid":"GO:0140535"},{"relation_name":"is_a","term_name":"endopeptidase complex","termid":"GO:1905369"}],"gene_count":36,"genes_by_uniquename":{"SJAG_00128":null,"SJAG_00712":null,"SJAG_00738":null,"SJAG_00762":null,"SJAG_00766":null,"SJAG_00778":null,"SJAG_00808":null,"SJAG_01014":null,"SJAG_01131":null,"SJAG_01203":null,"SJAG_01489":null,"SJAG_01544":null,"SJAG_01652":null,"SJAG_02341":null,"SJAG_02502":null,"SJAG_02562":null,"SJAG_02900":null,"SJAG_02992":null,"SJAG_03151":null,"SJAG_03321":null,"SJAG_03408":null,"SJAG_03638":null,"SJAG_03733":null,"SJAG_04088":null,"SJAG_04144":null,"SJAG_04211":null,"SJAG_04229":null,"SJAG_04306":null,"SJAG_04357":null,"SJAG_04477":null,"SJAG_04484":null,"SJAG_04541":null,"SJAG_04572":null,"SJAG_04888":null,"SJAG_04969":null,"SJAG_05316":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"proteasome complex","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"26S proteasome","type":"narrow"},{"name":"proteasome","type":"exact"}],"termid":"GO:0000502","terms_by_termid":{"GO:0000502":null,"GO:0008540":null,"GO:0008541":null,"GO:0019773":null,"GO:0019774":null}}


id: PBO:0031845
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cell_wall_morphology_during_vegetative_growth","termid":"PBO:0031845"}


id: MONDO:0009124
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare multiple congenital syndrome characterized primarily by growth retardation, microcephaly, distinctive facial dysmorphism, cutaneous eczema, a mild to severe intellectual deficit and genital abnormalities.","definition_xrefs":["Orphanet:235"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"},{"relation_name":"is_a","term_name":"ectodermal dysplasia syndrome","termid":"MONDO:0019287"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"Dubowitz syndrome","secondary_identifiers":["ICD9:742.8","NCIT:C125591","MEDGEN:59797","MedDRA:10059589","MESH:C535718","NORD:1064","OMIM:223370","SCTID:2593002","icd11.foundation:758537040","UMLS:C0175691","GARD:6290","DOID:14796"],"synonyms":[{"name":"Dubowitz syndrome","type":"exact"},{"name":"Dubowitz's syndrome","type":"exact"},{"name":"dwarfism-eczema-peculiar facies syndrome","type":"related"},{"name":"intrauterine growth retardation, short stature, microcephaly, mild intellectual disability with behavior problems, eczema, and unusual and distinctive faci","type":"related"},{"name":"intrauterine growth retardation, short stature, microcephaly, mild intellectual disability with behaviour problems, eczema, and unusual and distinctive faci","type":"related"},{"name":"intrauterine growth retardation, short stature, microcephaly, mild mental retardation with behavior problems, eczema, and unusual and distinctive faci","type":"related"},{"name":"intrauterine growth retardation, short stature, microcephaly, mild mental retardation with behaviour problems, eczema, and unusual and distinctive faci","type":"related"}],"termid":"MONDO:0009124","xrefs":{"Monarch":{"xref_id":"0009124"}}}


id: PBO:0075634
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small proline rich protein 2D","termid":"PBO:0075634"}


id: PBO:0050842
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"integrin binding sialoprotein","termid":"PBO:0050842"}


id: GO:0016674
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces an acceptor other than quinone or a related compound, oxygen, NAD, NADP, an iron-sulfur protein, disulfide or a cytochrome.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete oxidoreductase activity, acting on sulfur group of donors, other acceptors (obsolete GO:0016674)","synonyms":[{"name":"oxidoreductase activity, acting on sulfur group of donors, other acceptors","type":"exact"},{"name":"oxidoreductase activity, acting on sulphur group of donors, other acceptors","type":"exact"}],"termid":"GO:0016674"}


id: GO:0030476
data:
  {"annotated_genes":["SJAG_03013","SJAG_01321","SJAG_00974","SJAG_04868"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88531,89025,90572,92093],"is_not":false,"summary":null,"term":"GO:0030476"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form an ascospore wall. During sporulation in Ascomycota, each ascospore nucleus becomes surrounded by a specialized spore wall, formed by deposition of spore wall components in the lumenal space between the outer and inner leaflets of the prospore membrane. An example of this process is found in Saccharomyces cerevisiae.","definition_xrefs":["PMID:14702385","GOC:mcc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"spore wall assembly","termid":"GO:0042244"},{"relation_name":"is_a","term_name":"fungal-type cell wall assembly","termid":"GO:0071940"},{"relation_name":"is_a","term_name":"meiotic cell cycle process","termid":"GO:1903046"},{"relation_name":"part_of","term_name":"ascospore wall biogenesis","termid":"GO:0070591"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00974":null,"SJAG_01321":null,"SJAG_03013":null,"SJAG_04868":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0071554"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0071554"},{"rel_name":"part_of","termid":"GO:0030437"}],"interesting_parent_ids":["GO:0008150","GO:0007049","GO:0030437","GO:0071554","GO:0044085"],"is_obsolete":false,"name":"ascospore wall assembly","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0007152"],"synonyms":[{"name":"spore wall assembly","type":"broad"}],"termid":"GO:0030476","terms_by_termid":{"GO:0030476":null}}


id: FYPO:0001814
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell growth phenotype in which cell population growth is normal (i.e. indistinguishable from wild type) under iron starvation conditions.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cell population growth","termid":"FYPO:0000047"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0002058","FYPO:0002057","FYPO:0000003","FYPO:0000139"],"is_obsolete":false,"name":"normal cell population growth during iron starvation","synonyms":[{"name":"normal cell population growth during iron depletion","type":"exact"},{"name":"normal cell population growth during iron deprivation","type":"exact"},{"name":"normal growth during iron starvation","type":"broad"}],"termid":"FYPO:0001814"}


id: MONDO:1010433
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Atrial septal defect that occurs in koala.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"atrial septal defect, non-human animal","termid":"MONDO:1010009"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"atrial septal defect, koala","secondary_identifiers":["OMIA:000089-38626"],"termid":"MONDO:1010433","xrefs":{"Monarch":{"xref_id":"1010433"}}}


id: MONDO:0008552
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inherited blood coagulation disease characterized by autosomal dominant inheritance with macrothrombocytopenia, platelet anisocytosis, prolonged bleeding time but only mildly increased bleeding tendency that has material basis in heterozygous mutation in the ITGA2B gene on chromosome 17q21.31 or the ITGB3 gene on chromosome 17q21.32.","definition_xrefs":["PMID:18065693","PMID:21454453","DOID:0060691","PMID:9834222"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited bleeding disorder, platelet-type","termid":"MONDO:0000009"},{"relation_name":"is_a","term_name":"inherited blood coagulation disorder","termid":"MONDO:0021181"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"platelet-type bleeding disorder 16","secondary_identifiers":["OMIM:187800","UMLS:C5442010","MEDGEN:1781222","MESH:C566061"],"synonyms":[{"name":"BDPLT16","type":"related"},{"name":"Glanzmann thrombasthenia, autosomal dominant","type":"related"},{"name":"autosomal dominant Glanzmann thrombasthenia","type":"exact"},{"name":"autosomal dominant thrombasthenia of Glanzmann and Naegeli","type":"exact"},{"name":"bleeding disorder, platelet-type, 16","type":"related"},{"name":"bleeding disorder, platelet-type, 16, autosomal dominant","type":"exact"},{"name":"platelet-type bleeding disorder 16","type":"exact"},{"name":"thrombasthenia of Glanzmann and Naegeli, autosomal dominant","type":"related"}],"termid":"MONDO:0008552","xrefs":{"Monarch":{"xref_id":"0008552"}}}


id: PBO:0090584
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dolichol kinase Sec59","termid":"PBO:0090584"}


id: GO:0060929
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The commitment of cells to atrioventricular (AV) node cell fates and their capacity to differentiate into AV node cells.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac pacemaker cell fate commitment","termid":"GO:0060927"},{"relation_name":"part_of","term_name":"atrioventricular node cell differentiation","termid":"GO:0060922"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"atrioventricular node cell fate commitment","synonyms":[{"name":"AV node cell fate commitment","type":"exact"}],"termid":"GO:0060929"}


id: PBO:0081211
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger matrin-type 1","termid":"PBO:0081211"}


id: PBO:0065576
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"parathyroid hormone 1 receptor","termid":"PBO:0065576"}


id: GO:0150175
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of phosphatidylethanolamine metabolic process.","definition_xrefs":["GOC:bc","PMID:30074985","GOC:aruk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of phospholipid metabolic process","termid":"GO:1903725"},{"relation_name":"regulates","term_name":"phosphatidylethanolamine metabolic process","termid":"GO:0046337"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"regulation of phosphatidylethanolamine metabolic process","termid":"GO:0150175"}


id: PBO:0042354
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD96 molecule","termid":"PBO:0042354"}


id: GO:0047776
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-citramalate = acetate + pyruvate.","definition_xrefs":["RHEA:15545","EC:4.1.3.22"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxo-acid-lyase activity","termid":"GO:0016833"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"citramalate lyase activity","secondary_identifiers":["MetaCyc:CITRAMALATE-LYASE-RXN","KEGG_REACTION:R00325"],"synonyms":[{"name":"(+)-citramalate pyruvate-lyase activity","type":"related"},{"name":"(3S)-citramalate pyruvate-lyase (acetate-forming)","type":"related"},{"name":"(3S)-citramalate pyruvate-lyase activity","type":"related"},{"name":"(S)-citramalate lyase activity","type":"related"},{"name":"citramalate pyruvate lyase activity","type":"related"},{"name":"citramalate pyruvate-lyase activity","type":"related"},{"name":"citramalate synthetase activity","type":"related"},{"name":"citramalic synthase activity","type":"related"},{"name":"citramalic-condensing enzyme","type":"related"}],"termid":"GO:0047776"}


id: MONDO:0000552
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An adenocarcinoma of the breast arising from the lobules. This is a relatively uncommon carcinoma, represents approximately 10% of the breast adenocarcinomas and is often bilateral or multifocal.","definition_xrefs":["NCIT:C3771"],"direct_ancestors":[{"relation_name":"is_a","term_name":"breast adenocarcinoma","termid":"MONDO:0004988"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"breast lobular carcinoma","secondary_identifiers":["MEDGEN:64634","EFO:0008509","UMLS:C0206692","DOID:0050938","SCTID:278054005","ICDO:8520/3"],"synonyms":[{"name":"carcinoma of lobule of mammary gland","type":"exact"},{"name":"lobular adenocarcinoma","type":"exact"},{"name":"lobular breast carcinoma","type":"exact"},{"name":"lobular carcinoma","type":"exact"},{"name":"lobular carcinoma of breast","type":"exact"},{"name":"lobular carcinoma of the breast","type":"exact"},{"name":"lobule of mammary gland carcinoma","type":"exact"}],"termid":"MONDO:0000552","xrefs":{"Monarch":{"xref_id":"0000552"}}}


id: FYPO:0005385
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which progression through the first meiotic nuclear division (part of the meiotic cell cycle) is arrested in metaphase under conditions where arrest does not normally occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_output","term_name":"abolished mitotic sister chromatid separation","termid":"FYPO:0001946"},{"relation_name":"is_a","term_name":"abnormally arrested meiosis I","termid":"FYPO:0002817"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000631"],"is_obsolete":false,"name":"abnormal cell cycle arrest in meiotic metaphase I","secondary_identifiers":["FYPO:0006769"],"synonyms":[{"name":"abnormal cell cycle arrest in metaphase I","type":"exact"},{"name":"abnormal cell cycle arrest in metaphase I during meiotic cell cycle","type":"exact"},{"name":"abnormal cell cycle arrest in metaphase during first meiotic nuclear division","type":"exact"},{"name":"abnormal cell cycle arrest in metaphase of meiosis I","type":"exact"},{"name":"abnormal meiotic cell cycle arrest in metaphase I","type":"exact"},{"name":"abolished meiosis I metaphase/anaphase transition","type":"related"}],"termid":"FYPO:0005385"}


id: GO:0030536
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Feeding behavior in a larval (immature) organism.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"feeding behavior","termid":"GO:0007631"},{"relation_name":"is_a","term_name":"larval behavior","termid":"GO:0030537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"larval feeding behavior","synonyms":[{"name":"larval feeding behaviour","type":"exact"}],"termid":"GO:0030536"}


id: FYPO:0001334
data:
  {"alleles_by_uniquename":{"SJAG_00871:allele-1":{"allele_type":"amino_acid_mutation","description":"cut3-T19E","gene_uniquename":"SJAG_00871","name":"cut3-T19E","uniquename":"SJAG_00871:allele-1"},"SJAG_01330:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01330","name":"mad2delta","uniquename":"SJAG_01330:allele-1"},"SJAG_04284:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04284","name":"nup61delta","uniquename":"SJAG_04284:allele-1"},"SJAG_04464:allele-1":{"allele_type":"amino_acid_mutation","description":"R152C","gene_uniquename":"SJAG_04464","name":"pim1-R152C","synonyms":[{"name":"Inferred CDK-phospho-mimic mutation","reference":"PMID:28954740","type":"exact"}],"uniquename":"SJAG_04464:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[119835],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000619"}],"single_locus_phenotype":[{"annotations":[119836],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000619"},{"annotations":[119913,119695],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004318"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype that affects the regulation of a molecular function, biological process, or biological quality in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation phenotype","termid":"FYPO:0000145"},{"relation_name":"is_a","term_name":"cellular process phenotype during vegetative growth","termid":"FYPO:0001331"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00871":null,"SJAG_01330":null,"SJAG_04284":null,"SJAG_04464":null},"genotype_count":3,"genotypes_by_uniquename":{"cut3-T19E-cut3-T19E-amino_acid_mutation-expression-not_assayed_or_wild_type__pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cut3-T19E(aa) pim1-R152C(aa)","display_uniquename":"cut3-T19E-cut3-T19E-amino_acid_mutation-expression-not_assayed_or_wild_type__pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00871:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]},"mad2delta":{"display_name":"mad2delta","display_uniquename":"mad2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01330:allele-1","expression":"Null"}]}]},"nup61delta":{"display_name":"nup61delta","display_uniquename":"nup61delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04284:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_00871","SJAG_04464"],"name":"regulation phenotype during vegetative growth","references_by_uniquename":{"PMID:21802294":null,"PMID:28954740":null,"PMID:32109380":null},"single_locus_annotated_genes":["SJAG_04284","SJAG_01330"],"single_locus_genotype_uniquenames":["mad2delta","nup61delta"],"synonyms":[{"name":"fission yeast regulation phenotype during vegetative growth","type":"exact"},{"name":"regulation phenotype during mitotic cell cycle","type":"related"}],"termid":"FYPO:0001334","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000137":null,"FYECO:0000162":null,"FYPO:0000619":null,"FYPO:0004318":null,"FYPO_EXT:0000001":null}}


id: MONDO:0025270
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Acquired infection of non-human animals by organisms of the genus toxoplasma.","definition_xrefs":["MESH:D014124"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protozoan infections, animal","termid":"MONDO:0025114"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"toxoplasmosis, non-human animal","synonyms":[{"name":"Toxoplasmoses, animal","type":"related"},{"name":"animal Toxoplasmoses","type":"related"},{"name":"animal toxoplasmosis","type":"related"}],"termid":"MONDO:0025270","xrefs":{"Monarch":{"xref_id":"0025270"}}}


id: MONDO:0010689
data:
  {"annotated_genes":["SJAG_02016"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85804],"is_not":false,"summary":null,"term":"MONDO:0010689"}]},"cv_name":"mondo","definition":"X-linked Charcot-Marie-Tooth disease type 4 is a rare, genetic, axonal, peripheral sensorimotor neuropathy characterized by an X-linked recessive inheritance pattern and the neonatal- to early childhood-onset of severe, slowly progressive, distal muscle weakness and atrophy (in particular of the peroneal group), as well as sensory impairment (with the lower extremities being more affected than the upper extremities), pes cavus, areflexia and hammertoes. Sensorineural hearing loss and cognitive impairment may also be associated. Females are asymptomatic and do not display the phenotype.","definition_xrefs":["Orphanet:101078"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Charcot-Marie-Tooth disease type X","termid":"MONDO:0018994"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02016":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244"],"is_obsolete":false,"name":"Charcot-Marie-Tooth disease X-linked recessive 4","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:162891","GARD:1240","UMLS:C0795910","OMIM:310490","DOID:0110212","SCTID:763400005"],"synonyms":[{"name":"CMT4X","type":"exact"},{"name":"CMTX 4","type":"exact"},{"name":"CMTX4","type":"exact"},{"name":"COWCK","type":"exact"},{"name":"Charcot-Marie-Tooth disease X-linked recessive type 4","type":"exact"},{"name":"Charcot-Marie-Tooth disease with deafness and intellectual disability","type":"exact"},{"name":"Charcot-Marie-Tooth disease with deafness and mental retardation","type":"exact"},{"name":"Charcot-Marie-Tooth disease, X-linked recessive, 4","type":"exact"},{"name":"Cowchock syndrome, X-linked recessive","type":"exact"},{"name":"NADMR","type":"exact"},{"name":"NAMSD","type":"exact"},{"name":"X-linked Charcot-Marie-Tooth disease type 4","type":"exact"},{"name":"axonal motor sensory neuropathy with deafness and intellectual disability","type":"exact"},{"name":"axonal motor sensory neuropathy with deafness and mental retardation","type":"exact"},{"name":"cowchock syndrome","type":"exact"},{"name":"neuropathy, axonal motor-sensory with deafness and intellectual disability","type":"related"},{"name":"neuropathy, axonal motor-sensory with deafness and mental retardation","type":"related"},{"name":"neuropathy, axonal motor-sensory, with deafness and intellectual disability","type":"related"},{"name":"neuropathy, axonal motor-sensory, with deafness and mental retardation","type":"related"}],"termid":"MONDO:0010689","terms_by_termid":{"MONDO:0010689":null},"xrefs":{"Monarch":{"xref_id":"0010689"}}}


id: PBO:0076344
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synaptotagmin 11","termid":"PBO:0076344"}


id: GO:1903397
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of secondary cell septum biogenesis.","definition_xrefs":["PMID:23878277","GO_REF:0000058","GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of mitotic division septum assembly","termid":"GO:0140281"},{"relation_name":"is_a","term_name":"regulation of secondary cell septum biogenesis","termid":"GO:1903395"},{"relation_name":"positively_regulates","term_name":"secondary cell septum biogenesis","termid":"GO:1990344"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0007049"},{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0000281"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0000281"}],"interesting_parent_ids":["GO:0007049","GO:0000281","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"positive regulation of secondary cell septum biogenesis","synonyms":[{"name":"activation of secondary cell septum biogenesis","type":"narrow"},{"name":"up regulation of secondary cell septum biogenesis","type":"exact"},{"name":"up-regulation of secondary cell septum biogenesis","type":"exact"},{"name":"upregulation of secondary cell septum biogenesis","type":"exact"}],"termid":"GO:1903397"}


id: PBO:0056056
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lumican","termid":"PBO:0056056"}


id: MONDO:0007668
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"globulin anomaly involving beta (2A)-globulin","secondary_identifiers":["UMLS:C1842009","OMIM:137900","MESH:C564229","MEDGEN:330741"],"synonyms":[{"name":"globulin anomaly involving beta (2A)-globulin","type":"exact"}],"termid":"MONDO:0007668","xrefs":{"Monarch":{"xref_id":"0007668"}}}


id: PBO:0034732
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromatin binding profiling","termid":"PBO:0034732"}


id: _global:regulates_level_of
data:
  {"annotation_feature_type":"gene","cv_name":"go/extensions/gorel","definition":"p regulates levels of c if p regulates some amount (PATO:0000070) of c","direct_ancestors":[{"relation_name":"is_a","term_name":"functionally_related_to","termid":"_global:functionally_related_to"},{"relation_name":"is_a","term_name":"go_annotation_extension_relation","termid":"_global:go_annotation_extension_relation"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulates_levels_of","secondary_identifiers":["RO:0002332","GOREL:0000036"],"termid":"_global:regulates_level_of"}


id: PBO:0071740
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L39 pseudogene 38","termid":"PBO:0071740"}


id: PBO:0053105
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"late cornified envelope pseudogene 4","termid":"PBO:0053105"}


id: FYPO:0000866
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which dimethylation of lysine at position 9 of histone H3 is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone H3-K9 methylation during vegetative growth","termid":"FYPO:0000458"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0002274","FYPO:0005447","FYPO:0001320","FYPO:0002494","FYPO:0001985"],"is_obsolete":false,"name":"abnormal histone H3-K9 dimethylation during vegetative growth","synonyms":[{"name":"abnormal histone H3 K9 dimethylation during vegetative growth","type":"exact"},{"name":"abnormal histone H3-K9 dimethylation during mitotic cell cycle","type":"related"},{"name":"abnormal histone H3K9 dimethylation during vegetative growth","type":"exact"},{"name":"abnormal histone H3K9me2 during vegetative growth","type":"exact"},{"name":"abnormal histone lysine H3 K9 dimethylation during vegetative growth","type":"exact"}],"termid":"FYPO:0000866"}


id: FYPO:0007667
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the tip of a shmoo, or mating projection, is decreased.","definition_xrefs":["PMID:9606213","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to shmoo tip","termid":"FYPO:0004802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000138","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"increased protein localization to shmoo tip","synonyms":[{"name":"increased protein localisation to shmoo tip","type":"exact"},{"name":"increased protein localization to mating projection tip","type":"exact"}],"termid":"FYPO:0007667"}


id: PBO:0057988
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3913-2","termid":"PBO:0057988"}


id: MONDO:0030015
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"bone marrow failure syndrome","termid":"MONDO:0000159"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"bone marrow failure syndrome 6","secondary_identifiers":["MEDGEN:1717739","OMIM:618849","UMLS:C5394274"],"synonyms":[{"name":"BMFS6","type":"exact"},{"name":"BONE MARROW FAILURE SYNDROME 6","type":"exact"},{"name":"bone marrow failure syndrome 6","type":"exact"}],"termid":"MONDO:0030015","xrefs":{"Monarch":{"xref_id":"0030015"}}}


id: PBO:0059170
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myelin protein zero like 1","termid":"PBO:0059170"}


id: MONDO:0016181
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete solid tumor associated with an acquired peripheral neuropathy (obsolete MONDO:0016181)","secondary_identifiers":["Orphanet:209019"],"termid":"MONDO:0016181","xrefs":{"Monarch":{"xref_id":"0016181"}}}


id: GO:1900630
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of methanophenazine.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biosynthetic process","termid":"GO:0009058"},{"relation_name":"is_a","term_name":"methanophenazine metabolic process","termid":"GO:1900629"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"methanophenazine biosynthetic process","synonyms":[{"name":"methanophenazine anabolism","type":"exact"},{"name":"methanophenazine biosynthesis","type":"exact"},{"name":"methanophenazine formation","type":"exact"},{"name":"methanophenazine synthesis","type":"exact"}],"termid":"GO:1900630"}


id: MONDO:0006975
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign or malignant myomatous neoplasm arising from smooth muscle.","definition_xrefs":["NCIT:C3751"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myomatous neoplasm","termid":"MONDO:0021545"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"smooth muscle tumor","secondary_identifiers":["MEDGEN:104911","DOID:4310","EFO:1001185","UMLS:C0206658","MESH:D018235"],"synonyms":[{"name":"neoplasm of smooth muscle","type":"exact"},{"name":"neoplasm of the smooth muscle","type":"exact"},{"name":"smooth muscle neoplasm","type":"exact"},{"name":"smooth muscle tumor","type":"exact"},{"name":"tumor of smooth muscle","type":"exact"},{"name":"tumor of the smooth muscle","type":"exact"},{"name":"tumour of smooth muscle","type":"exact"},{"name":"tumour of the smooth muscle","type":"exact"}],"termid":"MONDO:0006975","xrefs":{"Monarch":{"xref_id":"0006975"}}}


id: GO:0060850
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that contributes to the commitment of a cell to a specific fate.","definition_xrefs":["GOC:sdb_2009","GOC:tb","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transcription involved in cell fate commitment (obsolete GO:0060850)","termid":"GO:0060850"}


id: PBO:0042496
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cadherin 16","termid":"PBO:0042496"}


id: GO:0062188
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N-(5Z,8Z,11Z,14Z-eicosatetraenoyl)-ethanolamine + O2 + reduced [NADPH--hemoprotein reductase] = H+ + H2O + N-(11,12-epoxy-5Z,8Z,14Z-eicosatrienoyl)-ethanolamine + oxidized [NADPH--hemoprotein reductase].","definition_xrefs":["RHEA:53144","PMID:21289075"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anandamide epoxidase activity","termid":"GO:0062186"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"anandamide 11,12 epoxidase activity","termid":"GO:0062188"}


id: PBO:0113259
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Peroxisomal matrix-localized lipase; target of SCFCdc4 ubiquitin ligase complex; peroxisomal, nuclear and cytosolic localization is dependent on the presence of oleate; transcription is regulated by Azf1p; LPX2 has a paralog, EIS1, that arose from the whole genome duplication","termid":"PBO:0113259"}


id: GO:0090301
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency, or extent of neural crest formation. Neural crest formation is the formation of the specialized region of ectoderm between the neural ectoderm (neural plate) and non-neural ectoderm. The neural crest gives rise to the neural crest cells that migrate away from this region as neural tube formation proceeds.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of epithelial to mesenchymal transition","termid":"GO:0010719"},{"relation_name":"is_a","term_name":"regulation of neural crest formation","termid":"GO:0090299"},{"relation_name":"negatively_regulates","term_name":"neural crest formation","termid":"GO:0014029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of neural crest formation","termid":"GO:0090301"}


id: PBO:0077712
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transition protein 2","termid":"PBO:0077712"}


id: PBO:0052537
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kallikrein related peptidase 10","termid":"PBO:0052537"}


id: GO:0033002
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The expansion of a muscle cell population by cell division.","definition_xrefs":["CL:0000187","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell population proliferation","termid":"GO:0008283"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"muscle cell proliferation","synonyms":[{"name":"myocyte proliferation","type":"exact"}],"termid":"GO:0033002"}


id: GO:0050201
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-fucose + ATP = beta-L-fucose 1-phosphate + ADP + 2 H+.","definition_xrefs":["EC:2.7.1.52","RHEA:13241"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016301"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016301","GO:0016740"],"is_obsolete":false,"name":"fucokinase activity","secondary_identifiers":["MetaCyc:FUCOKINASE-RXN","Reactome:R-HSA-6787540","KEGG_REACTION:R03161"],"synonyms":[{"name":"ATP:6-deoxy-L-galactose 1-phosphotransferase activity","type":"related"},{"name":"ATP:beta-L-fucose 1-phosphotransferase activity","type":"related"},{"name":"L-fucokinase activity","type":"related"},{"name":"L-fucose kinase activity","type":"related"},{"name":"fucokinase (phosphorylating) activity","type":"related"},{"name":"fucose kinase activity","type":"related"}],"termid":"GO:0050201"}


id: MONDO:0021325
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A cancer that involves the thoracic part of esophagus.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"esophageal cancer","termid":"MONDO:0007576"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0004335"],"is_obsolete":false,"name":"malignant neoplasm of thoracic esophagus","secondary_identifiers":["ICD9:150.1","MEDGEN:102268","SCTID:187723009","NCIT:C3532","UMLS:C0153411"],"synonyms":[{"name":"cancer of thoracic part of esophagus","type":"exact"},{"name":"cancer of thoracic part of oesophagus","type":"exact"},{"name":"malignant neoplasm of the thoracic esophagus","type":"exact"},{"name":"malignant neoplasm of the thoracic oesophagus","type":"exact"},{"name":"malignant neoplasm of thoracic part of esophagus","type":"exact"},{"name":"malignant neoplasm of thoracic part of oesophagus","type":"exact"},{"name":"malignant thoracic part of esophagus neoplasm","type":"exact"},{"name":"malignant thoracic part of oesophagus neoplasm","type":"exact"},{"name":"thoracic part of esophagus cancer","type":"exact"},{"name":"thoracic part of oesophagus cancer","type":"exact"}],"termid":"MONDO:0021325","xrefs":{"Monarch":{"xref_id":"0021325"}}}


id: GO:0034164
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of toll-like receptor 9 signaling pathway.","definition_xrefs":["GOC:add","PMID:16551253","PMID:17328678"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of toll-like receptor 9 signaling pathway","termid":"GO:0034163"},{"relation_name":"is_a","term_name":"negative regulation of cytoplasmic pattern recognition receptor signaling pathway","termid":"GO:0039532"},{"relation_name":"negatively_regulates","term_name":"toll-like receptor 9 signaling pathway","termid":"GO:0034162"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of toll-like receptor 9 signaling pathway","synonyms":[{"name":"negative regulation of TLR9 signaling pathway","type":"exact"},{"name":"negative regulation of toll-like receptor 9 signalling pathway","type":"exact"}],"termid":"GO:0034164"}


id: MONDO:0004031
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete ovary mixed epithelial carcinoma (obsolete MONDO:0004031)","termid":"MONDO:0004031","xrefs":{"Monarch":{"xref_id":"0004031"}}}


id: PBO:0072315
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S26 pseudogene 1","termid":"PBO:0072315"}


id: GO:0005072
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Activity of any of the molecules that transmit the signal from a TGF-beta receptor through the cytoplasm to the nucleus.","definition_xrefs":["GOC:hjd"],"gene_count":0,"genotype_count":0,"name":"obsolete transforming growth factor beta receptor, cytoplasmic mediator activity (obsolete GO:0005072)","synonyms":[{"name":"TGF-beta receptor, cytoplasmic mediator activity","type":"exact"},{"name":"TGFbeta receptor, cytoplasmic mediator activity","type":"exact"}],"termid":"GO:0005072"}


id: GO:0031177
data:
  {"annotated_genes":["SJAG_04031","SJAG_00869"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[59322,65070],"is_not":false,"summary":null,"term":"GO:0031177"}]},"cv_name":"molecular_function","definition":"Binding to phosphopantetheine, the vitamin pantetheine 4'-(dihydrogen phosphate).","definition_xrefs":["GOC:vw","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vitamin binding","termid":"GO:0019842"},{"relation_name":"is_a","term_name":"amide binding","termid":"GO:0033218"},{"relation_name":"is_a","term_name":"modified amino acid binding","termid":"GO:0072341"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00869":null,"SJAG_04031":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"phosphopantetheine binding","references_by_uniquename":{"GO_REF:0000002":null},"termid":"GO:0031177","terms_by_termid":{"GO:0031177":null}}


id: PBO:0001224
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"D-arabinono-1,4-lactone oxidase (predicted)","termid":"PBO:0001224"}


id: GO:0098539
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The side (leaflet) of the transport vesicle membrane that faces the cytoplasm.","definition_xrefs":["GOC:ab"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic side of membrane","termid":"GO:0098562"},{"relation_name":"part_of","term_name":"transport vesicle membrane","termid":"GO:0030658"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0031410","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"cytoplasmic side of transport vesicle membrane","synonyms":[{"name":"external side of transport vesicle membrane","type":"exact"}],"termid":"GO:0098539"}


id: MONDO:0002694
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Formation or presence of a blood clot (thrombus) in the cavernous sinus of the brain. Infections of the paranasal sinuses and adjacent structures, craniocerebral trauma, and thrombophilia are associated conditions. Clinical manifestations include dysfunction of cranial nerves iii, iv, V, and vi, marked periorbital swelling, chemosis, fever, and visual loss. (From Adams et al., Principles of Neurology, 6th ed, p711)","definition_xrefs":["MESH:D020226"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracranial sinus thrombosis","termid":"MONDO:0002692"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cavernous sinus thrombosis","secondary_identifiers":["MEDGEN:65970","SCTID:89980009","UMLS:C0238454","DOID:3575"],"synonyms":[{"name":"thrombosis of cavernous venous sinus","type":"exact"}],"termid":"MONDO:0002694","xrefs":{"Monarch":{"xref_id":"0002694"}}}


id: MONDO:0800486
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A group of disorders that affect the bones secondary to increased levels of minerals or deficient levels of minerals such as calcium, magnesium, phosphorus, and vitamin D. Representative examples are osteomalacia, osteoporosis, and Paget disease.","definition_xrefs":["NCIT:C97045"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bone disorder","termid":"MONDO:0005381"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metabolic bone disorder","secondary_identifiers":["MEDGEN:2699","UMLS:C0005944"],"termid":"MONDO:0800486","xrefs":{"Monarch":{"xref_id":"0800486"}}}


id: MONDO:0034980
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A rare ophthalmic disorder characterized by an abnormally large optic disk (greater than 2.1 mm in diameter). The anomaly is usually bilateral with otherwise normal configuration of the disk, and typically associated with an increased cup-to-disc ratio, a round or horizontal oval optic cup, and an intact, pale-appearing neuroretinal rim. In a less frequent variant, a unilateral, anomalous superior excavation obliterates part of the adjacent neuroretinal rim. In general, visual acuity and visual fields are normal, except for an enlarged blind spot. Ciliary arteries are more common in megalopapilla.","definition_xrefs":["Orphanet:519402"],"gene_count":0,"genotype_count":0,"name":"obsolete isolated megalopapilla (obsolete MONDO:0034980)","secondary_identifiers":["ICD10CM:Q14.2","icd11.foundation:1410300100"],"termid":"MONDO:0034980","xrefs":{"Monarch":{"xref_id":"0034980"}}}


id: GO:0010358
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process that pertains to the organization of a leaf in three-dimensional space once the structure has initially formed.","definition_xrefs":["GOC:tb","PMID:16971475"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure arrangement","termid":"GO:0048532"},{"relation_name":"part_of","term_name":"leaf morphogenesis","termid":"GO:0009965"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"leaf shaping","synonyms":[{"name":"leaf structural organization","type":"related"}],"termid":"GO:0010358"}


id: PBO:0028526
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_tRNA_wobble_base_5-methoxycarbonylmethyl-2-thiouridine_biosynthesis","termid":"PBO:0028526"}


id: MONDO:0019612
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Functioning gonadotropic adenoma is a very rare pituitary tumor, macroscopically characterized by a soft, well vascularized, variable sized adenoma, with occasional areas of hemorrage or necrosis, that secretes biologically active gonadotropins. In addition to common neurological signs due to mass effect (headache and/or visual field deterioration), additional clinical manifestations include menstrual irregularities (secondary amenorrhea, oligomenorhea or severe menorrhagia), galactorrhea, infertility or ovarian hyperstimulation syndrome (in premenopausal women), testicular enlargement and, occasionally, hypogonadism (in men) and isosexual precocious puberty (in children).","definition_xrefs":["Orphanet:91348"],"direct_ancestors":[{"relation_name":"is_a","term_name":"functioning pituitary gland adenoma","termid":"MONDO:0003429"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functioning gonadotropic adenoma","secondary_identifiers":["SCTID:254960002","ICD10CM:D35.2","GARD:19158","MEDGEN:577353","NCIT:C45915","UMLS:C0346304"],"synonyms":[{"name":"functioning pituitary gonadotropic adenoma","type":"exact"},{"name":"gonadotroph adenoma","type":"exact"}],"termid":"MONDO:0019612","xrefs":{"Monarch":{"xref_id":"0019612"}}}


id: GO:0099541
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Cell-cell signaling from post to pre-synapse, across the synaptic cleft, mediated by a lipid.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trans-synaptic signaling","termid":"GO:0099537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"trans-synaptic signaling by lipid","termid":"GO:0099541"}


id: GO:0050608
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + NAD+ + vanillin = 2 H+ + NADH + vanillate.","definition_xrefs":["EC:1.2.1.67","RHEA:13309"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor","termid":"GO:0016620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"vanillin dehydrogenase activity","secondary_identifiers":["MetaCyc:1.2.1.67-RXN","KEGG_REACTION:R05699"],"synonyms":[{"name":"vanillin:NAD+ oxidoreductase activity","type":"related"}],"termid":"GO:0050608"}


id: GO:0018981
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways involving triethanolamine, a combustible, hygroscopic, colorless liquid commonly used in dry-cleaning solutions, cosmetics, detergents, textile processing, wool scouring, and as a corrosion inhibitor and pharmaceutical alkalizing agent.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete triethanolamine metabolic process (obsolete GO:0018981)","synonyms":[{"name":"triethanolamine metabolism","type":"exact"}],"termid":"GO:0018981"}


id: GO:0090415
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 7-hydroxymethyl chlorophyll a + 2 reduced ferredoxin + 2 H+ chlorophyll a + 2 oxidized ferredoxin + H2O.","definition_xrefs":["GOC:kad","PMID:21934147","RHEA:53544"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor","termid":"GO:0052592"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"7-hydroxymethyl chlorophyll a reductase activity","secondary_identifiers":["EC:1.17.7.2"],"termid":"GO:0090415"}


id: PBO:0113517
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ubiquitin-binding protein; centrally regulates metabolic homeostasis and carbon utilization during nutrient limitation by managing Snf1p activity; subunit of TORC1 rapamycin-sensitive complex involved in growth control; central scaffold that holds the different components of TORC1 together; contains four HEAT repeats and seven WD-40 repeats","termid":"PBO:0113517"}


id: PBO:0089327
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"karyopherin/importin beta family nuclear import signal receptor Kap95","termid":"PBO:0089327"}


id: FYPO:0009042
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of sorbitol than normal.","definition_xrefs":["PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002682"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0002682","FYPO:0001985","FYPO:0000003","FYPO:0005447"],"is_obsolete":false,"name":"resistance to sorbitol","synonyms":[{"name":"resistance to sorbitol during mitotic cell cycle","type":"related"},{"name":"resistance to sorbitol during vegetative growth","type":"exact"},{"name":"resistant to sorbitol","type":"exact"}],"termid":"FYPO:0009042"}


id: GO:0008982
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein N-phosphohistidine + sugar(out) = protein histidine + sugar phosphate(in). This differs from primary and secondary active transport in that the solute is modified during transport.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate transmembrane transporter activity","termid":"GO:0015144"},{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"},{"relation_name":"is_a","term_name":"active transmembrane transporter activity","termid":"GO:0022804"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0016740","GO:0003824","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"protein-N(PI)-phosphohistidine-sugar phosphotransferase activity","secondary_identifiers":["GO:0015455","GO:0015456","TC:4.A"],"synonyms":[{"name":"PEP--sugar phosphotransferase enzyme II activity","type":"exact"},{"name":"PEP-dependent phosphotransferase enzyme II","type":"related"},{"name":"PTS permease activity","type":"related"},{"name":"PTS transporter","type":"related"},{"name":"enzyme II of the phosphotransferase system","type":"related"},{"name":"phosphoenolpyruvate-sugar phosphotransferase enzyme II","type":"related"},{"name":"phosphohistidinoprotein-hexose phosphotransferase activity","type":"related"},{"name":"phosphoprotein factor-hexose phosophotransferase activity","type":"related"},{"name":"phosphotransfer-driven group translocator","type":"broad"},{"name":"protein-Np-phosphohistidine-sugar phosphotransferase activity","type":"exact"}],"termid":"GO:0008982"}


id: GO:0075041
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of turgor formation in the symbiont appressorium.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of establishment of turgor in appressorium (obsolete GO:0075041)","termid":"GO:0075041"}


id: PBO:0031692
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_nuclear_transport","termid":"PBO:0031692"}


id: PBO:0056528
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"melanocortin 5 receptor","termid":"PBO:0056528"}


id: GO:0097105
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a presynaptic membrane, including any proteins associated with the membrane, but excluding other cellular components. A presynaptic membrane is a specialized area of membrane of the axon terminal that faces the plasma membrane of the neuron or muscle fiber with which the axon terminal establishes a synaptic junction.","definition_xrefs":["PMID:18550748","GOC:sjp","GOC:BHF","PMID:15797875","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane assembly","termid":"GO:0071709"},{"relation_name":"is_a","term_name":"presynaptic membrane organization","termid":"GO:0097090"},{"relation_name":"part_of","term_name":"presynapse assembly","termid":"GO:0099054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0061024"],"is_obsolete":false,"name":"presynaptic membrane assembly","synonyms":[{"name":"pre-synaptic membrane assembly","type":"exact"}],"termid":"GO:0097105"}


id: PR:Q9USJ1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 3-mercaptopyruvate sulfurtransferase SseA that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-mercaptopyruvate sulfurtransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC4B3.01","secondary_identifiers":["UniProtKB:Q9USJ1"],"synonyms":[{"name":"MST (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SPCC4B3.01","type":"related"},{"name":"Spom972h-sseA","type":"exact"}],"termid":"PR:Q9USJ1"}


id: GO:0060924
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The commitment of cells to atrial cardiac muscle cell fates and their capacity to differentiate into cardiac muscle cells of the atrium. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac muscle cell fate commitment","termid":"GO:0060923"},{"relation_name":"part_of","term_name":"atrial cardiac muscle cell differentiation","termid":"GO:0055011"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"atrial cardiac muscle cell fate commitment","synonyms":[{"name":"atrial cardiomyocyte cell fate commitment","type":"related"},{"name":"atrial heart muscle cell fate commitment","type":"exact"}],"termid":"GO:0060924"}


id: PBO:0084953
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Multistep regulator of cAMP-PKA signaling; inhibits PKA downstream of Gpa2p and Cyr1p, thereby increasing cAMP dependency; promotes ubiquitin-dependent proteolysis of Ira2p; regulated by G-alpha protein Gpa2p; GPB1 has a paralog, GPB2, that arose from the whole genome duplication","termid":"PBO:0084953"}


id: GO:0043916
data:
  {"annotated_genes":["SJAG_01971"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[101902],"is_not":false,"summary":null,"term":"GO:0043916"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: DNA containing 7-methylguanine + H2O = DNA with abasic site + 7-methylguanine. This reaction is the hydrolysis of DNA by cleavage of the N-C1' glycosidic bond between the damaged DNA 7-methylguanine and the deoxyribose sugar to remove the 7-methylguanine, leaving an abasic site.","definition_xrefs":["PMID:16468998","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alkylbase DNA N-glycosylase activity","termid":"GO:0003905"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01971":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140097"}],"interesting_parent_ids":["GO:0140097","GO:0003824","GO:0016798","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"DNA-7-methylguanine glycosylase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0043916","terms_by_termid":{"GO:0043916":null}}


id: PBO:0052280
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysine demethylase 6B","termid":"PBO:0052280"}


id: GO:1902616
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which O-acyl-L-carnitine is transported across a membrane.","definition_xrefs":["GO_REF:0000069","GOC:pr","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"quaternary ammonium group transport","termid":"GO:0015697"},{"relation_name":"is_a","term_name":"transmembrane transport","termid":"GO:0055085"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0006810","GO:0055085","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"O-acyl-L-carnitine transmembrane transport","synonyms":[{"name":"O-acylcarnitine transmembrane transport","type":"exact"}],"termid":"GO:1902616"}


id: FYPO:0002970
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the mitotic spindle pole body is increased during metaphase.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein localization to mitotic spindle pole body","termid":"FYPO:0002969"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000138","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"increased protein localization to mitotic spindle pole body during metaphase","synonyms":[{"name":"increased protein localisation to mitotic spindle pole body during metaphase","type":"exact"},{"name":"increased protein localization to mitotic SPB during metaphase","type":"exact"},{"name":"increased protein localization to mitotic spindle pole body during mitotic metaphase","type":"exact"},{"name":"increased protein localization to spindle pole body during metaphase during vegetative growth","type":"exact"}],"termid":"FYPO:0002970"}


id: GO:0140143
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Collagenous component of basement membrane ECMs, including collagen IV and other types of collagen specifically expressed in basement membrane.","definition_xrefs":["PMID:28040522","PMID:21123617","PMID:39223427","PMID:31387942","PMID:28324731","PMID:21421915"],"direct_ancestors":[{"relation_name":"is_a","term_name":"external encapsulating structure","termid":"GO:0030312"},{"relation_name":"part_of","term_name":"solid phase of basement membrane","termid":"GO:0140139"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"collagenous component of basement membrane","termid":"GO:0140143"}


id: PBO:0026980
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_prospore_membrane","termid":"PBO:0026980"}


id: FYPO:0000913
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A sporulation phenotype that results in the formation of an ascus that contains spores of non-uniform size and DNA content.","definition_xrefs":["PMID:20298435","PomBase:mah","PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal sporulation","termid":"FYPO:0000121"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000121"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0000631","FYPO:0000121"],"is_obsolete":false,"name":"abnormal sporulation resulting in formation of ascus containing non-uniform spores","synonyms":[{"name":"abnormal ascospore formation resulting in formation ascus containing non-uniform spores","type":"exact"},{"name":"abnormal sporulation resulting in formation of asci containing non-uniform spores","type":"related"}],"termid":"FYPO:0000913"}


id: PBO:0013814
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"was previously annotated as atg14","termid":"PBO:0013814"}


id: MONDO:0011645
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete aneurysmal bone cysts (obsolete MONDO:0011645)","termid":"MONDO:0011645","xrefs":{"Monarch":{"xref_id":"0011645"}}}


id: MONDO:1010560
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Spina bifida that occurs in rabbit.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spina bifida, non-human animal","termid":"MONDO:1010047"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spina bifida, rabbit","secondary_identifiers":["OMIA:000933-9986"],"termid":"MONDO:1010560","xrefs":{"Monarch":{"xref_id":"1010560"}}}


id: MONDO:1012753
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any progressive retinal atrophy that occurs in dogs due to a mutation in the MERTK gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"},{"relation_name":"is_a","term_name":"progressive retinal atrophy, dog","termid":"MONDO:1012226"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"progressive retinal atrophy, MERTK-related, dog","secondary_identifiers":["OMIA:001932-9615"],"termid":"MONDO:1012753","xrefs":{"Monarch":{"xref_id":"1012753"}}}


id: GO:0006256
data:
  {"annotated_genes":["SJAG_03676"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[76802],"is_not":false,"summary":null,"term":"GO:0006256"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of UDP, uridine (5'-)diphosphate.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine ribonucleoside diphosphate catabolic process","termid":"GO:0009195"},{"relation_name":"is_a","term_name":"pyrimidine ribonucleotide catabolic process","termid":"GO:0009222"},{"relation_name":"is_a","term_name":"UDP metabolic process","termid":"GO:0046048"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03676":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"UDP catabolic process","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"UDP breakdown","type":"exact"},{"name":"UDP catabolism","type":"exact"},{"name":"UDP degradation","type":"exact"}],"termid":"GO:0006256","terms_by_termid":{"GO:0006256":null}}


id: PBO:0110306
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial [2Fe-2S] cluster assembly ferredoxin Etp1/ heme O monooxygenase Cox15, fusion protein","termid":"PBO:0110306"}


id: PBO:0111340
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small subunit processome, U3 snoRNP-associated WD repeat protein Nan1/Utp17","termid":"PBO:0111340"}


id: PBO:0069964
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1258, pseudogene","termid":"PBO:0069964"}


id: MONDO:0015391
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A teratoma that involves the nasopharynx.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"teratoma","termid":"MONDO:0002601"},{"relation_name":"is_a","term_name":"nasopharyngeal neoplasm","termid":"MONDO:0005375"},{"relation_name":"is_a","term_name":"extragonadal teratoma","termid":"MONDO:0019500"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nasopharyngeal teratoma","secondary_identifiers":["Orphanet:141107","MEDGEN:1625954","icd11.foundation:1597380817","ICD10CM:D10.6","GARD:19948","NCIT:C202982","UMLS:C4531264"],"synonyms":[{"name":"nasopharynx teratoma","type":"exact"},{"name":"teratoma of the nasopharynx","type":"exact"}],"termid":"MONDO:0015391","xrefs":{"Monarch":{"xref_id":"0015391"}}}


id: GO:1902933
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving isopentenol.","definition_xrefs":["GO_REF:0000068","GOC:TermGenie","PMID:17693564","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"olefinic compound metabolic process","termid":"GO:0120254"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"isopentenol metabolic process","synonyms":[{"name":"isopentenol metabolism","type":"exact"}],"termid":"GO:1902933"}


id: GO:0006611
data:
  {"annotated_genes":["SJAG_04464","SJAG_01534","SJAG_04400","SJAG_01805","SJAG_04366","SJAG_01245","SJAG_04472","SJAG_03836","SJAG_01358","SJAG_00375","SJAG_00753","SJAG_04656","SJAG_04312"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[64782,64952,71930,93495,101476,109912,117719,118004,118353],"is_not":false,"summary":null,"term":"GO:0006611"},{"annotations":[100764,102171,111342,94131],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0046827"}]},"cv_name":"biological_process","definition":"The directed movement of a protein from the nucleus into the cytoplasm.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein transport","termid":"GO:0006886"},{"relation_name":"is_a","term_name":"nuclear export","termid":"GO:0051168"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00375":null,"SJAG_00753":null,"SJAG_01245":null,"SJAG_01358":null,"SJAG_01534":null,"SJAG_01805":null,"SJAG_03836":null,"SJAG_04312":null,"SJAG_04366":null,"SJAG_04400":null,"SJAG_04464":null,"SJAG_04472":null,"SJAG_04656":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006913"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006913","GO:0006810"],"is_obsolete":false,"name":"protein export from nucleus","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0097349"],"synonyms":[{"name":"copper-induced protein export from nucleus","type":"related"},{"name":"protein export from cell nucleus","type":"exact"},{"name":"protein export out of nucleus","type":"exact"},{"name":"protein transport from nucleus to cytoplasm","type":"exact"},{"name":"protein-nucleus export","type":"exact"}],"termid":"GO:0006611","terms_by_termid":{"GO:0006611":null,"GO:0046827":null}}


id: GO:0051144
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of propanediol, a sweet, colorless, viscous, hygroscopic liquid with the formula CH3-CHOH-CH2OH.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycol catabolic process","termid":"GO:0042846"},{"relation_name":"is_a","term_name":"propanediol metabolic process","termid":"GO:0051143"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"propanediol catabolic process","synonyms":[{"name":"1,2-dihydroxypropane catabolic process","type":"exact"},{"name":"1,2-dihydroxypropane catabolism","type":"exact"},{"name":"propanediol breakdown","type":"exact"},{"name":"propanediol catabolism","type":"exact"},{"name":"propanediol degradation","type":"exact"},{"name":"propylene glycol catabolic process","type":"exact"},{"name":"propylene glycol catabolism","type":"exact"}],"termid":"GO:0051144"}


id: PBO:0000205
data:
  {"annotation_feature_type":"gene","cv_name":"m_f_g","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleocytoplasmic shuttling protein","termid":"PBO:0000205"}


id: PBO:0077583
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tropomodulin 2","termid":"PBO:0077583"}


id: MONDO:0010322
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"non-syndromic X-linked intellectual disability","termid":"MONDO:0019181"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intellectual disability, X-linked 2","secondary_identifiers":["MESH:C563135","UMLS:C0796207","GARD:22675","MEDGEN:162922","OMIM:300428","DOID:0112016"],"synonyms":[{"name":"MRX2","type":"exact"},{"name":"intellectual disability, X-linked 2","type":"exact"},{"name":"mental retardation, X-linked 2","type":"related"}],"termid":"MONDO:0010322","xrefs":{"Monarch":{"xref_id":"0010322"}}}


id: GO:0060492
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The close range interaction of two or more cells or tissues that causes the cells of the foregut to change their fates and specify the development of the lung.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organ induction","termid":"GO:0001759"},{"relation_name":"is_a","term_name":"regulation of embryonic development","termid":"GO:0045995"},{"relation_name":"is_a","term_name":"regulation of branching involved in lung morphogenesis","termid":"GO:0061046"},{"relation_name":"positively_regulates","term_name":"lung field specification","termid":"GO:0060424"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lung induction","termid":"GO:0060492"}


id: PBO:0073072
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syndecan binding protein pseudogene 1","termid":"PBO:0073072"}


id: PBO:0086415
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative GPI protein; SWAT-GFP and mCherry fusion proteins localize to the vacuole; transcription dependent upon Azf1p","termid":"PBO:0086415"}


id: MONDO:0017347
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An aggressive diffuse large B-cell lymphoma frequently arising in the setting of HIV infection and characterized by the presence of large neoplastic cells resembling B-immunoblasts which have the immunophenotypic profile of plasma cells. Sites of involvement include the oral cavity, sinonasal cavity, skin, soft tissues, gastrointestinal tract, and bone.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Epstein-Barr virus-associated malignant lymphoproliferative disorder","termid":"MONDO:0017343"},{"relation_name":"is_a","term_name":"diffuse large B-cell lymphoma","termid":"MONDO:0018905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"plasmablastic lymphoma","secondary_identifiers":["SCTID:724648008","DOID:0080779","MedDRA:10065039","MESH:D000069293","GARD:12125","icd11.foundation:803046659","ICDO:9684/3","ICDO:9735/3","NCIT:C7224","Orphanet:289666","MEDGEN:483338","UMLS:C3472614","ONCOTREE:PLBL"],"synonyms":[{"name":"PBL","type":"exact"},{"name":"PLBL","type":"related"},{"name":"Plasmablastic lymphoma","type":"exact"}],"termid":"MONDO:0017347","xrefs":{"Monarch":{"xref_id":"0017347"}}}


id: PBO:0109622
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fatty acid desaturase 2B (pseudogene)","termid":"PBO:0109622"}


id: PBO:0054768
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2180","termid":"PBO:0054768"}


id: PBO:0056358
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitogen-activated protein kinase 1","termid":"PBO:0056358"}


id: PBO:0091275
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial aspartyl/glutamyl-tRNA amidotransferase subunit B-related Aim41","termid":"PBO:0091275"}


id: GO:0061227
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any developmental process that results in the creation of defined areas or spaces within the mesonephros to which cells respond and eventually are instructed to differentiate.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pattern specification involved in kidney development","termid":"GO:0061004"},{"relation_name":"part_of","term_name":"mesonephros development","termid":"GO:0001823"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pattern specification involved in mesonephros development","synonyms":[{"name":"mesonephros pattern formation","type":"related"},{"name":"mesonephros pattern specification","type":"exact"}],"termid":"GO:0061227"}


id: PBO:0032728
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_transcription_from_MCB_promoter","termid":"PBO:0032728"}


id: FYPO:0000412
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which plasma membrane fusion involved in cytogamy is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mating","termid":"FYPO:0000031"},{"relation_name":"is_a","term_name":"abnormal membrane organization","termid":"FYPO:0001013"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000301"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000301","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal cell fusion during mating","synonyms":[{"name":"abnormal cell fusion during conjugation","type":"exact"},{"name":"abnormal plasma membrane fusion involved in cytogamy","type":"exact"},{"name":"cell fusion: abnormal","type":"related"}],"termid":"FYPO:0000412"}


id: PATO:0001188
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A maturity quality inhering in a bearer by virtue of the bearer's being in an inactive stage in the development of some insects, between the larval and the pupal stages.","definition_xrefs":["WordNet:WordNet"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maturity","termid":"PATO:0000261"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prepupal","termid":"PATO:0001188"}


id: PR:000037084
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A tropomyosin cdc8 homodimer (Schizosaccharomyces pombe) that is composed of two subunits of the acetylated form of tropomyosin cdc8.","definition_xrefs":["PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tropomyosin cdc8 homodimer (Schizosaccharomyces pombe)","termid":"PR:000037083"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tropomyosin cdc8 homodimer, acetylated form (Schizosaccharomyces pombe)","pombase_gene_id":"SPAC27F1.02c","synonyms":[{"name":"Spom-(cdc8/AcRes+)*2","type":"exact"}],"termid":"PR:000037084"}


id: MOD:01232
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-lysine residue to 3x(12)C labeled N6-propanoyl-L-lysine.","definition_xrefs":["Unimod:58#K","PubMed:11857757","PubMed:12175151","PubMed:11999733"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N6-propanoyl-L-lysine","termid":"MOD:01398"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:01155"},{"rel_name":"is_a","termid":"MOD:01875"}],"interesting_parent_ids":["MOD:01155","MOD:01875"],"is_obsolete":false,"name":"3x(12)C labeled N6-propanoyl-L-lysine","synonyms":[{"name":"Propionate labeling reagent light form (N-term & K)","type":"related"},{"name":"Propionyl","type":"related"}],"termid":"MOD:01232"}


id: PBO:0057884
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3188","termid":"PBO:0057884"}


id: PR:Q09687
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC13C5.05c gene.","definition_xrefs":["UniProtKB:Q09687","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoacetylglucosamine mutase 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC13C5.05c","synonyms":[{"name":"N-acetylglucosamine-phosphate mutase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"PAGM (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-SPAC13C5.05c","type":"exact"},{"name":"acetylglucosamine phosphomutase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q09687"}


id: PBO:0030222
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_guanosine-diphosphatase_activity","termid":"PBO:0030222"}


id: PBO:0057979
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3714","termid":"PBO:0057979"}


id: PBO:0091343
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human RAD9","termid":"PBO:0091343"}


id: PBO:0031624
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-delayed_onset_of_sporulation","termid":"PBO:0031624"}


id: MONDO:0006848
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The lack of sufficient energy or protein to meet the body's metabolic demands, as a result of either an inadequate dietary intake of protein, intake of poor quality dietary protein, increased demands due to disease, or increased nutrient losses.","definition_xrefs":["EFO:1001033"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-energy malnutrition","termid":"MONDO:0001371"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"marasmus","secondary_identifiers":["ICD9:261","ICD10CM:E41","SCTID:29740003","UMLS:C0086588","MedDRA:10026820","MEDGEN:39251","DOID:12328"],"synonyms":[{"name":"nutritional atrophy","type":"exact"},{"name":"nutritional marasmus","type":"exact"}],"termid":"MONDO:0006848","xrefs":{"Monarch":{"xref_id":"0006848"}}}


id: GO:0009724
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events in which an abscisic acid stimulus is received by a cell and converted into a molecular signal.","definition_xrefs":["GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detection of hormone stimulus","termid":"GO:0009720"},{"relation_name":"is_a","term_name":"response to abscisic acid","termid":"GO:0009737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of abscisic acid stimulus","synonyms":[{"name":"perception of abscisic acid stimulus","type":"related"}],"termid":"GO:0009724"}


id: GO:0080136
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that enables cells to respond in a more rapid and robust manner than nonprimed cells to much lower levels of a stimulus indicating the organism is under stress.","definition_xrefs":["PMID:19318610"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular response to stress","termid":"GO:0080135"},{"relation_name":"part_of","term_name":"cellular response to stress","termid":"GO:0033554"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"priming of cellular response to stress","synonyms":[{"name":"priming of response to stress","type":"broad"},{"name":"priming of stress response","type":"broad"}],"termid":"GO:0080136"}


id: MONDO:1011112
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Cryptorchidism that occurs in pig.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cryptorchidism, non-human animal","termid":"MONDO:1010275"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cryptorchidism, pig","secondary_identifiers":["OMIA:000243-9823"],"termid":"MONDO:1011112","xrefs":{"Monarch":{"xref_id":"1011112"}}}


id: GO:0072581
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of an N6-(lysyl)-L-lysine residue in a protein, producing protein-N6-(beta-lysyl)-L-lysine ((2S)-2-amino-6-([(2S)-2,6-diaminohexanoyl]amino)hexanoic acid). This modification is observed in, and is probably unique to, translation elongation factor P (EF-P).","definition_xrefs":["RESID:AA0531","GOC:mah","GOC:jsg","PMID:20729861"],"gene_count":0,"genotype_count":0,"name":"obsolete protein-N6-(L-lysyl)-L-lysine modification to protein-N6-(beta-lysyl)-L-lysine (obsolete GO:0072581)","termid":"GO:0072581"}


id: MONDO:0017421
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete non-syndromic terminal limb defects (obsolete MONDO:0017421)","secondary_identifiers":["Orphanet:294929"],"synonyms":[{"name":"isolated terminal limb defects","type":"related"},{"name":"nonsyndromic terminal limb defects","type":"exact"},{"name":"terminal limb defects","type":"exact"},{"name":"terminal meromelia","type":"exact"}],"termid":"MONDO:0017421","xrefs":{"Monarch":{"xref_id":"0017421"}}}


id: PR:O14230
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A farnesyl pyrophosphate synthase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00542","PANTHER:PTHR11525:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"farnesyl pyrophosphate synthase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6F12.13c","secondary_identifiers":["UniProtKB:O14230"],"synonyms":[{"name":"(2E,6E)-farnesyl diphosphate synthase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Dimethylallyltranstransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"FPP synthase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"FPS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Geranyltranstransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-FDPS","type":"exact"},{"name":"farnesyl diphosphate synthase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14230"}


id: MONDO:0011037
data:
  {"annotated_genes":["SJAG_04521"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87648],"is_not":false,"summary":null,"term":"MONDO:0011037"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04521":null},"genotype_count":0,"is_obsolete":false,"name":"renal dysplasia, cystic, susceptibility to","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C3275898","DOID:0111682","MEDGEN:477529","MESH:C537755","OMIM:601331"],"synonyms":[{"name":"CYSRD","type":"related"},{"name":"diffuse cystic renal dysplasia","type":"related"},{"name":"renal dysplasia diffuse cystic","type":"related"},{"name":"renal dysplasia, cystic, susceptibility to","type":"exact"}],"termid":"MONDO:0011037","terms_by_termid":{"MONDO:0011037":null},"xrefs":{"Monarch":{"xref_id":"0011037"}}}


id: MONDO:0001622
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"lagophthalmos","termid":"MONDO:0001604"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"mechanical lagophthalmos","secondary_identifiers":["DOID:13037","icd11.foundation:466575235","MEDGEN:509845","SCTID:21783006","ICD10CM:H02.22","ICD9:374.22","UMLS:C0155198"],"termid":"MONDO:0001622","xrefs":{"Monarch":{"xref_id":"0001622"}}}


id: GO:2000576
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of microtubule motor activity.","definition_xrefs":["GOC:kmv"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of microtubule motor activity (obsolete GO:2000576)","synonyms":[{"name":"positive regulation of axonemal motor activity","type":"related"},{"name":"positive regulation of dynein","type":"related"},{"name":"positive regulation of dynein ATPase activity","type":"related"},{"name":"positive regulation of kinesin","type":"related"},{"name":"positive regulation of kinesin motor activity","type":"related"},{"name":"positive regulation of kinetochore motor activity","type":"related"}],"termid":"GO:2000576"}


id: GO:0102405
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (+)-taxifolin(1-) + O2 + NADPH(4-) + H+ = (+)-dihydromyricetin + NADP(3-) + H2O.","definition_xrefs":["GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"(+)-taxifolin 5'-hydroxylase activity","secondary_identifiers":["RHEA:61116","MetaCyc:RXN-13718"],"termid":"GO:0102405"}


id: GO:0034110
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of homotypic cell-cell adhesion.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell-cell adhesion","termid":"GO:0022407"},{"relation_name":"regulates","term_name":"homotypic cell-cell adhesion","termid":"GO:0034109"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"regulation of homotypic cell-cell adhesion","secondary_identifiers":["Reactome:R-HSA-9759476"],"termid":"GO:0034110"}


id: GO:1990306
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A ubiquitin ligase complex consisting of RSP5 and BUL components. It polyubiquinates plasma membrane transporters and permeases, required for their endocytosis and subsequent degradation in the vacuole. BUL1 or BUL2, respectively, bind to the target protein, enabling ubiquitylation by Rsp5. Phosphorylation of BUL proteins results in binding to 14-3-3 proteins, protecting the permeases from down-regulation.","definition_xrefs":["PMID:9931424","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein-containing complex","termid":"GO:0140535"},{"relation_name":"is_a","term_name":"transferase complex","termid":"GO:1990234"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"RSP5-BUL ubiquitin ligase complex","synonyms":[{"name":"RSP5-BUL1 complex","type":"exact"},{"name":"RSP5-BUL2 complex","type":"related"}],"termid":"GO:1990306"}


id: PBO:0075955
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STAM binding protein","termid":"PBO:0075955"}


id: PBO:0065005
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PR/SET domain 10","termid":"PBO:0065005"}


id: GO:0044026
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. An increase in the epigenetic methylation of cytosine and adenosine residues in DNA.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete DNA hypermethylation (obsolete GO:0044026)","termid":"GO:0044026"}


id: GO:0010480
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process aimed at the progression of a microsporocyte cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. A microsporocyte is a diploid (2n) cell that undergoes meiosis and forms four haploid (1n) microspores; also called microspore mother cell and, in seed plants, pollen mother cell.","definition_xrefs":["CL:0000248","PMID:16751349"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"sporocyte differentiation","termid":"GO:0048533"},{"relation_name":"part_of","term_name":"anther development","termid":"GO:0048653"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"microsporocyte differentiation","synonyms":[{"name":"pollen mother cell differentiation","type":"related"}],"termid":"GO:0010480"}


id: PR:O74749
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- hse1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74749"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"class E vacuolar protein-sorting machinery protein hse1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1734.08","synonyms":[{"name":"Spom972h-hse1","type":"exact"}],"termid":"PR:O74749"}


id: MONDO:0006249
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A polyp found mainly in the stomach and colon. Microscopically, it is characterized by elongated, serrated crypts lined by proliferative epithelium. Hyperplastic polyps are traditionally considered non-neoplastic, but ras mutation is common, clonality has been demonstrated and biochemical abnormalities and epidemiological associations that occur in colorectal adenomas and carcinomas have been found (WHO Tumors of the Digestive System, 2000).","definition_xrefs":["NCIT:C4083"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyp","termid":"MONDO:0005079"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyperplastic polyp","secondary_identifiers":["MEDGEN:87189","EFO:1000299","UMLS:C0333983"],"synonyms":[{"name":"HP","type":"exact"},{"name":"MP","type":"exact"},{"name":"metaplastic polyp","type":"exact"}],"termid":"MONDO:0006249","xrefs":{"Monarch":{"xref_id":"0006249"}}}


id: PBO:0043386
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"citramalyl-CoA lyase","termid":"PBO:0043386"}


id: PBO:0065739
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxisomal membrane protein 4","termid":"PBO:0065739"}


id: PBO:0061914
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 1 subfamily D member 2","termid":"PBO:0061914"}


id: MONDO:0004270
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign, well circumscribed neoplasm that is located within the lumen of a duct in the breast parenchyma. It is characterized by the presence of glandular structures at the periphery and fibrous tissue at the center of the tumor.","definition_xrefs":["NCIT:C40384"],"direct_ancestors":[{"relation_name":"is_a","term_name":"breast adenoma","termid":"MONDO:0002058"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"breast ductal adenoma","secondary_identifiers":["MEDGEN:307308","UMLS:C1511307","DOID:7538"],"synonyms":[{"name":"breast ductal adenoma","type":"exact"},{"name":"ductal adenoma","type":"exact"}],"termid":"MONDO:0004270","xrefs":{"Monarch":{"xref_id":"0004270"}}}


id: PBO:0081194
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein interacting with K protein 1","termid":"PBO:0081194"}


id: MONDO:0017518
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"non-syndromic brachydactyly of toes","termid":"MONDO:0017452"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"brachydactyly of toes, bilateral","secondary_identifiers":["UMLS:C5229808","MEDGEN:1702894","icd11.foundation:357312922","Orphanet:295134"],"synonyms":[{"name":"short toes, bilateral","type":"exact"}],"termid":"MONDO:0017518","xrefs":{"Monarch":{"xref_id":"0017518"}}}


id: PBO:0041054
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bromodomain containing 7 pseudogene 5","termid":"PBO:0041054"}


id: GO:0047787
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a 3-oxo-5beta-steroid + NADP+ = a 3-oxo-Delta(4)-steroid + H+ + NADPH. The enzyme from human efficiently catalyzes the reduction of progesterone, androstenedione, 17alpha-hydroxyprogesterone and testosterone to 5beta-reduced metabolites; it can also act on aldosterone, corticosterone and cortisol, but to a lesser extent. The bile acid intermediates 7alpha,12alpha-dihydroxy-4-cholesten-3- one and 7alpha-hydroxy-4-cholesten-3-one can also act as substrates.","definition_xrefs":["EC:1.3.1.3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enone reductase activity","termid":"GO:0035671"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"Delta4-3-oxosteroid 5beta-reductase activity","secondary_identifiers":["RHEA:54412","GO:0047752","MetaCyc:RXN-23672"],"synonyms":[{"name":"3-oxo-5beta-steroid:NADP+ delta4-oxidoreductase activity","type":"exact"},{"name":"3-oxo-Delta(4)-steroid 5-beta-reductase activity","type":"exact"},{"name":"3-oxo-Delta4-steroid 5beta-reductase activity","type":"exact"},{"name":"4,5beta-dihydrocortisone:NADP+ delta4-oxidoreductase activity","type":"narrow"},{"name":"5-beta-reductase activity","type":"broad"},{"name":"5beta-cholestan-3-one:NADP+ 4,5-oxidoreductase activity","type":"narrow"},{"name":"5beta-reductase activity","type":"related"},{"name":"Delta(4)-3-ketosteroid 5-beta-reductase activity","type":"related"},{"name":"Delta(4)-5-beta-reductase activity","type":"related"},{"name":"Delta(4)-hydrogenase activity","type":"related"},{"name":"Delta4-3-ketosteroid 5beta-reductase activity","type":"related"},{"name":"Delta4-3-oxosteroid 5-beta-reductase activity","type":"exact"},{"name":"Delta4-5beta-reductase activity","type":"related"},{"name":"Delta4-hydrogenase activity","type":"related"},{"name":"androstenedione 5-beta-reductase activity","type":"narrow"},{"name":"androstenedione 5beta-reductase activity","type":"narrow"},{"name":"cholestenone 5-beta-reductase activity","type":"narrow"},{"name":"cholestenone 5b-reductase activity","type":"narrow"},{"name":"cholestenone 5beta-reductase activity","type":"narrow"},{"name":"cortisone 5-beta-reductase activity","type":"narrow"},{"name":"cortisone 5beta-reductase activity","type":"narrow"},{"name":"cortisone b-reductase activity","type":"narrow"},{"name":"cortisone beta-reductase activity","type":"narrow"},{"name":"cortisone delta(4)-5-beta-reductase activity","type":"narrow"},{"name":"cortisone delta4-5beta-reductase activity","type":"related"},{"name":"steroid 5-beta-reductase activity","type":"related"},{"name":"steroid 5beta-reductase activity","type":"related"},{"name":"testosterone 5-beta-reductase activity","type":"narrow"},{"name":"testosterone 5beta-reductase activity","type":"narrow"}],"termid":"GO:0047787"}


id: GO:0044847
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process by which a symbiont acquires iron from its host, either from heme or other iron containing molecules such as transferrin and lactoferrin. Begins with either the secretion of symbiont gene products that bind iron- or heme-containing molecules (siderophores and hemophores) from the symbiont cell into the host, or by expression of receptors that bind iron- or heme-containing molecules on the symbiont cell surface. Ends when the iron-containing compound is transported into the symbiont cell.","definition_xrefs":["PMID:22865843","PMID:15487950"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acquisition of nutrients from host","termid":"GO:0044002"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"iron acquisition from host","secondary_identifiers":["GO:0052099"],"synonyms":[{"name":"acquisition by organism of nutrients from host via siderophores","type":"related"},{"name":"acquisition by symbiont of nutrients from host via siderophores","type":"narrow"},{"name":"heme acquisition","type":"related"},{"name":"iron acquisition","type":"broad"},{"name":"iron acquisition by symbiont from host","type":"exact"},{"name":"iron acquisition by symbiont from host heme","type":"narrow"}],"termid":"GO:0044847"}


