# terms

id: GO:1900155
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of bone trabecula formation.","definition_xrefs":["GOC:TermGenie","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"regulation of bone trabecula formation","termid":"GO:1900154"},{"relation_name":"negatively_regulates","term_name":"bone trabecula formation","termid":"GO:0060346"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of bone trabecula formation","synonyms":[{"name":"down regulation of bone trabecula biogenesis","type":"related"},{"name":"down regulation of bone trabecula formation","type":"exact"},{"name":"down regulation of bone trabeculation","type":"exact"},{"name":"down regulation of skeletal trabecula biogenesis","type":"related"},{"name":"down regulation of skeletal trabecula formation","type":"exact"},{"name":"down regulation of skeletal trabeculation","type":"exact"},{"name":"down-regulation of bone trabecula biogenesis","type":"related"},{"name":"down-regulation of bone trabecula formation","type":"exact"},{"name":"down-regulation of bone trabeculation","type":"exact"},{"name":"down-regulation of skeletal trabecula biogenesis","type":"related"},{"name":"down-regulation of skeletal trabecula formation","type":"exact"},{"name":"down-regulation of skeletal trabeculation","type":"exact"},{"name":"downregulation of bone trabecula biogenesis","type":"related"},{"name":"downregulation of bone trabecula formation","type":"exact"},{"name":"downregulation of bone trabeculation","type":"exact"},{"name":"downregulation of skeletal trabecula biogenesis","type":"related"},{"name":"downregulation of skeletal trabecula formation","type":"exact"},{"name":"downregulation of skeletal trabeculation","type":"exact"},{"name":"inhibition of bone trabecula biogenesis","type":"related"},{"name":"inhibition of bone trabecula formation","type":"narrow"},{"name":"inhibition of bone trabeculation","type":"narrow"},{"name":"inhibition of skeletal trabecula biogenesis","type":"related"},{"name":"inhibition of skeletal trabecula formation","type":"narrow"},{"name":"inhibition of skeletal trabeculation","type":"narrow"},{"name":"negative regulation of bone trabecula biogenesis","type":"related"},{"name":"negative regulation of bone trabeculation","type":"exact"},{"name":"negative regulation of skeletal trabecula biogenesis","type":"related"},{"name":"negative regulation of skeletal trabecula formation","type":"exact"},{"name":"negative regulation of skeletal trabeculation","type":"exact"}],"termid":"GO:1900155"}


id: PBO:0063450
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphodiesterase 8B","termid":"PBO:0063450"}


id: PBO:0078343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Glu (CTC) 9-1","termid":"PBO:0078343"}


id: PBO:0079625
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme E2 N like (gene/pseudogene)","termid":"PBO:0079625"}


id: GO:0001080
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A transcription regulation process in which the presence of one nitrogen source leads to an increase in the frequency, rate, or extent of transcription, from an RNA polymerase II promoter, of specific genes involved in the metabolism of other nitrogen sources.","definition_xrefs":["GOC:txnOH","GOC:mah","PMID:19104072"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nitrogen catabolite regulation of transcription from RNA polymerase II promoter","termid":"GO:0001079"},{"relation_name":"is_a","term_name":"nitrogen catabolite activation of transcription","termid":"GO:0090294"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006351"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006355"},{"rel_name":"regulates","termid":"GO:0006351"}],"interesting_parent_ids":["GO:0010467","GO:0006355","GO:0006351","GO:0008150"],"is_obsolete":false,"name":"nitrogen catabolite activation of transcription from RNA polymerase II promoter","synonyms":[{"name":"positive regulation of transcription from RNA polymerase II promoter by nitrogen catabolites","type":"exact"}],"termid":"GO:0001080"}


id: MONDO:0003253
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A usually benign granular cell tumor that arises from the vulva.","definition_xrefs":["NCIT:C40328"],"direct_ancestors":[{"relation_name":"is_a","term_name":"granular cell tumor","termid":"MONDO:0006235"},{"relation_name":"is_a","term_name":"vulvar neoplasm","termid":"MONDO:0021049"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vulvar granular cell tumor","secondary_identifiers":["DOID:5043","UMLS:C1520083","MEDGEN:276992"],"synonyms":[{"name":"granular cell tumor of mammalian vulva","type":"exact"},{"name":"granular cell tumour of mammalian vulva","type":"exact"},{"name":"mammalian vulva granular cell tumor","type":"exact"},{"name":"mammalian vulva granular cell tumour","type":"exact"},{"name":"vulvar granular cell tumor","type":"exact"}],"termid":"MONDO:0003253","xrefs":{"Monarch":{"xref_id":"0003253"}}}


id: MONDO:0044251
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete australia antigen (obsolete MONDO:0044251)","secondary_identifiers":["OMIM:209800"],"synonyms":[{"name":"Australia antigen","type":"related"}],"termid":"MONDO:0044251","xrefs":{"Monarch":{"xref_id":"0044251"}}}


id: PBO:0038861
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ArfGAP with dual PH domains 1","termid":"PBO:0038861"}


id: PBO:0089786
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin, WD repeat Nup155","termid":"PBO:0089786"}


id: MONDO:0002129
data:
  {"annotated_genes":["SJAG_04287","SJAG_03905","SJAG_01013","SJAG_05979","SJAG_01748","SJAG_01349","SJAG_03453"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87574,87572,87573,87727,87571,87726],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0018874"},{"annotations":[86532],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0002629"}]},"cv_name":"mondo","definition":"A primary or metastatic malignant neoplasm affecting the bone or articular cartilage.","definition_xrefs":["NCIT:C4016"],"direct_ancestors":[{"relation_name":"is_a","term_name":"musculoskeletal system cancer","termid":"MONDO:0000637"},{"relation_name":"is_a","term_name":"bone neoplasm","termid":"MONDO:0019060"}],"gene_count":7,"genes_by_uniquename":{"SJAG_01013":null,"SJAG_01349":null,"SJAG_01748":null,"SJAG_03453":null,"SJAG_03905":null,"SJAG_04287":null,"SJAG_05979":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"bone cancer","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:184","CSP:2019-1041","MEDGEN:79002","UMLS:C0279530","SCTID:428281000","ICD9:170.9","EFO:1000350","MESH:D001859"],"synonyms":[{"name":"CA - bone cancer","type":"exact"},{"name":"bone cancer","type":"exact"},{"name":"bone neoplasm","type":"broad"},{"name":"bone tumor","type":"broad"},{"name":"bone tumour","type":"broad"},{"name":"cancer of bone","type":"exact"},{"name":"cancer of skeletal element","type":"exact"},{"name":"cancer of the bone","type":"exact"},{"name":"malignant bone neoplasm","type":"exact"},{"name":"malignant bone tumor","type":"exact"},{"name":"malignant bone tumour","type":"exact"},{"name":"malignant neoplasm of bone","type":"exact"},{"name":"malignant neoplasm of skeletal element","type":"exact"},{"name":"malignant neoplasm of the bone","type":"exact"},{"name":"malignant osseous neoplasm","type":"exact"},{"name":"malignant osseous tumor","type":"exact"},{"name":"malignant osseous tumour","type":"exact"},{"name":"malignant skeletal element neoplasm","type":"exact"},{"name":"malignant tumor of bone","type":"exact"},{"name":"malignant tumor of the bone","type":"exact"},{"name":"malignant tumour of bone","type":"exact"},{"name":"malignant tumour of the bone","type":"exact"},{"name":"osseous cancer","type":"exact"},{"name":"osseous tumor","type":"broad"},{"name":"osseous tumour","type":"broad"},{"name":"skeletal element cancer","type":"exact"}],"termid":"MONDO:0002129","terms_by_termid":{"MONDO:0002629":null,"MONDO:0018874":null},"xrefs":{"Monarch":{"xref_id":"0002129"}}}


id: PBO:0089065
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fatty-acyl-CoA binding protein Acb1","termid":"PBO:0089065"}


id: PATO:0001436
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An attachment quality inhering in a flower by virtue of the bearer's lacking a stalk, as in flowers or leaves that grow directly from the stem.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/Sessility_(botany)"],"direct_ancestors":[{"relation_name":"is_a","term_name":"attachment quality","termid":"PATO:0001435"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sessile (sensu botany)","termid":"PATO:0001436"}


id: PBO:0064659
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A like 4A","termid":"PBO:0064659"}


id: FYPO:0000594
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of transposition is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal transposition","termid":"FYPO:0000591"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"increased transposition","synonyms":[{"name":"increased transposable element transposition","type":"exact"},{"name":"increased transposition during mitotic cell cycle","type":"related"},{"name":"increased transposition during vegetative growth","type":"exact"},{"name":"transposable element transposition: increased","type":"related"}],"termid":"FYPO:0000594"}


id: GO:0075101
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the host organism stops, prevents, or reduces the frequency, rate or extent of protein kinase-mediated signal transduction in the symbiont. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation by host of symbiont protein kinase-mediated signal transduction (obsolete GO:0075101)","termid":"GO:0075101"}


id: MONDO:0004018
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A carcinoma that involves the liver.","definition_xrefs":["MONDO:patterns/location"],"gene_count":0,"genotype_count":0,"name":"obsolete liver carcinoma (obsolete MONDO:0004018)","termid":"MONDO:0004018","xrefs":{"Monarch":{"xref_id":"0004018"}}}


id: GO:0031334
data:
  {"annotated_genes":["SJAG_00766","SJAG_03048","SJAG_00718","SJAG_03421","SJAG_01771","SJAG_00973","SJAG_01837"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[102736,117059,90013],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905561"},{"annotations":[88573,106064],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001178"},{"annotations":[79940,90072],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045899"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein complex assembly.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein-containing complex assembly","termid":"GO:0043254"},{"relation_name":"is_a","term_name":"positive regulation of cellular component biogenesis","termid":"GO:0044089"},{"relation_name":"is_a","term_name":"positive regulation of cellular component organization","termid":"GO:0051130"},{"relation_name":"positively_regulates","term_name":"protein-containing complex assembly","termid":"GO:0065003"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00718":null,"SJAG_00766":null,"SJAG_00973":null,"SJAG_01771":null,"SJAG_01837":null,"SJAG_03048":null,"SJAG_03421":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0065003"},{"rel_name":"positively_regulates","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0044085","GO:0065003","GO:0008150"],"is_obsolete":false,"name":"positive regulation of protein-containing complex assembly","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"activation of protein complex assembly","type":"narrow"},{"name":"positive regulation of protein complex assembly","type":"related"},{"name":"stimulation of protein complex assembly","type":"narrow"},{"name":"up regulation of protein complex assembly","type":"exact"},{"name":"up-regulation of protein complex assembly","type":"exact"},{"name":"upregulation of protein complex assembly","type":"exact"}],"termid":"GO:0031334","terms_by_termid":{"GO:0045899":null,"GO:1905561":null,"GO:2001178":null}}


id: SO:0002289
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"VIPER retrotransposons are members of the YR_retrotransposon (SO:0002286 superfamily with protein domains: RT, RH, YR. RT is a reverse transcriptase. RH is RNAse H. YR is Tyrosine recombinase. Inverted terminal repeats (ITRs) in VIPER are arranged in A-pol-B-A-B order where A and B represent ITRs. VIPER is only found in kinetoplastida genomes.","definition_xrefs":["PMID:16297462"],"direct_ancestors":[{"relation_name":"is_a","term_name":"YR_retrotransposon","termid":"SO:0002286"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Viper_YR_retrotransposon","synonyms":[{"name":"RYV retrotransposon","type":"exact"},{"name":"Viper YR retrotransposon","type":"exact"},{"name":"Viper retrotransposon","type":"exact"}],"termid":"SO:0002289"}


id: PR:O74832
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pet127 gene.","definition_xrefs":["UniProtKB:O74832","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA degradation protein pet127, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1183.04c","synonyms":[{"name":"Spom972h-pet127","type":"exact"}],"termid":"PR:O74832"}


id: PBO:0068098
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 405","termid":"PBO:0068098"}


id: FYPO:0005635
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the spindle begins later than normal during the first meiotic nuclear division.","definition_xrefs":["PMID:21920317","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to meiotic spindle","termid":"FYPO:0006454"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"delayed onset of protein localization to spindle during meiosis I","synonyms":[{"name":"delayed onset of protein localisation to spindle during meiosis I","type":"exact"},{"name":"delayed onset of protein localization to meiosis I spindle","type":"exact"},{"name":"delayed onset of protein localization to meiotic spindle during meiosis I","type":"exact"},{"name":"delayed onset of protein localization to spindle during first meiotic nuclear division","type":"exact"},{"name":"delayed protein localization to spindle during meiosis I","type":"exact"}],"termid":"FYPO:0005635"}


id: PBO:0081004
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger and BTB domain containing 41","termid":"PBO:0081004"}


id: MONDO:0017678
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A disease in which punctate palmoplantar keratoderma is a major feature..","gene_count":0,"genotype_count":0,"name":"obsolete obsolete disease with punctate palmoplantar keratoderma as a major feature (obsolete MONDO:0017678)","secondary_identifiers":["Orphanet:308023"],"synonyms":[{"name":"disease with punctate palmoplantar hyperkeratosis as a major feature","type":"exact"}],"termid":"MONDO:0017678","xrefs":{"Monarch":{"xref_id":"0017678"}}}


id: PBO:0055176
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2600","termid":"PBO:0055176"}


id: MONDO:0012593
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Brain-lung-thyroid syndrome is a rare disorder characterized by congenital hypothyroidism (CH), infant respiratory distress syndrome (IRDS) and benign hereditary chorea (BHC).","definition_xrefs":["Orphanet:209905"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"movement disorder","termid":"MONDO:0005395"},{"relation_name":"is_a","term_name":"NKX2-1 related choreoathetosis and congenital hypothyroidism with or without pulmonary dysfunction","termid":"MONDO:0100520"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"brain-lung-thyroid syndrome","secondary_identifiers":["OMIM:610978","MEDGEN:369694","GARD:12163","MESH:C567034","UMLS:C1970269","icd11.foundation:809856670","SCTID:719098007"],"synonyms":[{"name":"BLT syndrome","type":"related"},{"name":"CAHTP","type":"related"},{"name":"brain-lung-thyroid syndrome","type":"exact"},{"name":"choreoathetosis and congenital hypothyroidism with or without pulmonary dysfunction","type":"related"},{"name":"choreoathetosis, hypothyroidism, and neonatal respiratory distress","type":"exact"},{"name":"choreoathetosis-hypothyroidism-neonatal respiratory distress","type":"related"},{"name":"choreoathetosis-hypothyroidism-neonatal respiratory distress syndrome","type":"exact"}],"termid":"MONDO:0012593","xrefs":{"Monarch":{"xref_id":"0012593"}}}


id: MONDO:0018824
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pyoderma gangrenosum (PG) is a primarily sterile inflammatory neutrophilic dermatosis characterized by recurrent cutaneous ulcerations with a mucopurulent or hemorrhagic exudate.","definition_xrefs":["Orphanet:48104"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyoderma","termid":"MONDO:0002922"},{"relation_name":"is_a","term_name":"autoinflammatory syndrome","termid":"MONDO:0019751"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"pyoderma gangrenosum","secondary_identifiers":["MESH:D017511","NANDO:2200437","ICD10CM:L88","NORD:1638","SCTID:74578003","DOID:8553","GARD:7510","icd11.foundation:2120746218","ICD9:686.01","MEDGEN:43224","UMLS:C0085652","MedDRA:10037635"],"termid":"MONDO:0018824","xrefs":{"Monarch":{"xref_id":"0018824"}}}


id: MONDO:1010663
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autoimmune thrombocytopenic purpura that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autoimmune thrombocytopenic purpura, non-human animal","termid":"MONDO:1010081"},{"relation_name":"is_a","term_name":"autoimmune thrombocytopenia, dog","termid":"MONDO:1010625"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autoimmune thrombocytopenic purpura, dog","secondary_identifiers":["OMIA:001104-9615"],"termid":"MONDO:1010663","xrefs":{"Monarch":{"xref_id":"1010663"}}}


id: PBO:0068575
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U2 small nuclear 26, pseudogene","termid":"PBO:0068575"}


id: FYPO:0003211
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which secondary cell septum biogenesis is abnormal. Secondary cell septum biogenesis results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of the secondary cell septum during cytokinesis.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal septum assembly","termid":"FYPO:0000117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000032"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000631","FYPO:0000032","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"abnormal secondary cell septum biogenesis","synonyms":[{"name":"abnormal secondary cell septum biogenesis during mitotic cell cycle","type":"related"},{"name":"abnormal secondary cell septum biogenesis during vegetative growth","type":"exact"},{"name":"abnormal secondary cell septum formation","type":"related"},{"name":"abnormal secondary cell septum synthesis","type":"related"},{"name":"abnormal secondary septum biogenesis","type":"exact"}],"termid":"FYPO:0003211"}


id: PBO:0113741
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MTNAP1 pseudogene 1","termid":"PBO:0113741"}


id: GO:0033964
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of gangliosides and neutral glycosphingolipids, releasing fatty acids to form the lyso-derivatives.","definition_xrefs":["EC:3.5.1.69"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016810","GO:0003824","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"glycosphingolipid deacylase activity","secondary_identifiers":["MetaCyc:3.5.1.69-RXN"],"synonyms":[{"name":"glycosphingolipid amidohydrolase activity","type":"related"},{"name":"glycosphingolipid ceramide deacylase activity","type":"broad"}],"termid":"GO:0033964"}


id: PR:Q9UT49
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cid13 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UT49"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"poly(A) RNA polymerase cid13 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC821.04c","synonyms":[{"name":"PAP (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-cid13","type":"exact"},{"name":"caffeine-induced death protein 13 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"polynucleotide adenylyltransferase cid13 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UT49"}


id: MONDO:0007433
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dementia/parkinsonism with non-Alzheimer amyloid plaques","secondary_identifiers":["OMIM:125320","MESH:C565115","UMLS:C1852223","MEDGEN:338883"],"synonyms":[{"name":"dementia/parkinsonism with non-Alzheimer amyloid plaques","type":"exact"}],"termid":"MONDO:0007433","xrefs":{"Monarch":{"xref_id":"0007433"}}}


id: GO:0052834
data:
  {"annotated_genes":["SJAG_03739"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[77641],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008934"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: myo-inositol phosphate + H2O = myo-inositol + phosphate.","definition_xrefs":["EC:3.1.3.25"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inositol phosphate phosphatase activity","termid":"GO:0052745"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03739":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0016787","GO:0016788","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"inositol monophosphate phosphatase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:RXN-10949","RHEA:24056"],"synonyms":[{"name":"L-myo-inositol-phosphate phosphatase activity","type":"related"},{"name":"inositol phosphatase activity","type":"related"},{"name":"inositol-1(or 4)-monophosphatase activity","type":"broad"},{"name":"inositol-phosphate phosphatase activity","type":"related"},{"name":"myo-inositol monophosphatase activity","type":"related"},{"name":"myo-inositol phosphatase activity","type":"related"},{"name":"myo-inositol-1(or 4)-phosphate phosphohydrolase activity","type":"broad"},{"name":"myo-inositol-phosphatase activity","type":"related"},{"name":"myo-inositol-phosphate phosphohydrolase activity","type":"related"}],"termid":"GO:0052834","terms_by_termid":{"GO:0008934":null}}


id: PBO:0005877
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase 1 (predicted)","termid":"PBO:0005877"}


id: SO:0002216
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A promoter element with consensus sequence [5'-TCG(G/C)(A/T)xxTTxAA], bound by the transcription factor Pho7.","definition_xrefs":["PMID:28811350"],"direct_ancestors":[{"relation_name":"is_a","term_name":"promoter_element","termid":"SO:0001659"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pho7_binding_site","synonyms":[{"name":"Pho7 binding site","type":"exact"}],"termid":"SO:0002216"}


id: PR:Q9P7Q9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- alg9 gene.","definition_xrefs":["UniProtKB:Q9P7Q9","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-1,2-mannosyltransferase alg9 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1834.05","synonyms":[{"name":"Dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Dol-P-Man:Man(8)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-alg9","type":"exact"},{"name":"asparagine-linked glycosylation protein 9 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P7Q9"}


id: PBO:0050001
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HIRA interacting protein 3","termid":"PBO:0050001"}


id: PBO:0068969
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 213, pseudogene","termid":"PBO:0068969"}


id: PBO:0034516
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-long,_thick_stable_microtubule_bundle","termid":"PBO:0034516"}


id: PBO:0071018
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 20","termid":"PBO:0071018"}


id: MONDO:0975753
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"benign vascular tumor","termid":"MONDO:0971115"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"papillary hemangioma","secondary_identifiers":["MEDGEN:1864329","UMLS:C5925092","Orphanet:673543"],"termid":"MONDO:0975753","xrefs":{"Monarch":{"xref_id":"0975753"}}}


id: PBO:0085750
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein kinase; implicated in Slt2p mitogen-activated (MAP) kinase signaling pathway; interacts with numerous components in the mating pheromone and CWI MAPK pathways; associates with Rlm1p; KDX1 has a paralog, SLT2, that arose from the whole genome duplication","termid":"PBO:0085750"}


id: PBO:0067887
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 189","termid":"PBO:0067887"}


id: PBO:0017593
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi phosphoprotein 3 family Vps74 (predicted)","termid":"PBO:0017593"}


id: PBO:0110456
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptional corepressor for ribosomal proteins via TOR signaling pathway Ifh1","termid":"PBO:0110456"}


id: GO:0051324
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell cycle phase which is the first stage of M phase of meiosis and mitosis and during which chromosomes condense and the two daughter centrioles and their asters migrate toward the poles of the cell.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle phase","termid":"GO:0022403"},{"relation_name":"part_of","term_name":"M phase","termid":"GO:0000279"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"prophase","secondary_identifiers":["Wikipedia:Prophase"],"termid":"GO:0051324"}


id: PBO:0055363
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2792","termid":"PBO:0055363"}


id: _global:causal_relation_between_entities
data:
  {"annotation_feature_type":"gene","cv_name":"external","direct_ancestors":[{"relation_name":"is_a","term_name":"causally_related_to","termid":"_global:causally_related_to"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"causal_relation_between_entities","secondary_identifiers":["RO:0002506"],"termid":"_global:causal_relation_between_entities"}


id: GO:0021534
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of cells, resulting in the expansion of a cell population in the hindbrain.","definition_xrefs":["GOC:jid","GOC:dgh","GOC:dph","GOC:cls","GO_REF:0000021"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neural precursor cell proliferation","termid":"GO:0061351"},{"relation_name":"part_of","term_name":"hindbrain development","termid":"GO:0030902"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell proliferation in hindbrain","termid":"GO:0021534"}


id: MOD:00049
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-histidine residue to diphthamide.","definition_xrefs":["Unimod:375#H","RESID:AA0040","ChEBI:16692","PubMed:15316019","PubMed:7430147","DeltaMass:122"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-histidine residue","termid":"MOD:00909"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine","synonyms":[{"name":"(2R)-1-amino-4-(4-[(2S)-2-amino-2-carboxyethyl]-1H-imidazol-2-yl)-N,N,N-trimethyl-1-oxobutan-2-aminium","type":"exact"},{"name":"(3-[4-(2-amino-2-carboxy-ethyl)-1H-imidazol-2-yl]-1-carbamoyl-propyl)-trimethylammonium","type":"exact"},{"name":"1-azanyl-4-(4-[2-azanyl-2-carboxyethyl]-1H-imidazol-2-yl)-N,N,N-trimethyl-1-oxobutan-2-azanium","type":"exact"},{"name":"2'-[3-carboxamido-3-(trimethylammonio)propyl]-L-histidine","type":"exact"},{"name":"2-[(R)-3-carboxamido-3-(trimethylammonio)propyl]-4-((S)-2-amino-2-carboxyethyl)-1H-imidazole","type":"exact"},{"name":"2-[3-carboxamido-3-(trimethylammonio)propyl]histidine","type":"exact"},{"name":"2-amino-3-[[2-(3-amino-3-carbamoyl-prop-1-enyl)-1,1,3-trimethyl-2,3-dihydroimidazol-5-yl]]propanoic acid","type":"exact"},{"name":"2-amino-4-[[5-(2-amino-2-carboxylato-ethyl)-1,1,3-trimethyl-2,3-dihydroimidazol-2-yl]]but-3-enamide","type":"exact"},{"name":"Diphth","type":"exact"},{"name":"Diphthamide","type":"related"},{"name":"MOD_RES Diphthamide","type":"exact"},{"name":"alpha-(aminocarbonyl)-4-(2-amino-2-carboxyethyl)-N,N,N-trimethyl-1H-imidazole-2-propanaminium","type":"exact"},{"name":"diphthamide","type":"exact"},{"name":"diphthamide (from histidine)","type":"exact"}],"termid":"MOD:00049"}


id: PBO:0031439
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-protein_mislocalized_to_nucleus_during_vegetative_growth","termid":"PBO:0031439"}


id: PBO:0051897
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"integrin subunit alpha 6","termid":"PBO:0051897"}


id: MONDO:0016582
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital heart malformation","termid":"MONDO:0019512"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital mitral malformation","secondary_identifiers":["UMLS:C5680882","Orphanet:2447","GARD:1495","MEDGEN:1842184"],"termid":"MONDO:0016582","xrefs":{"Monarch":{"xref_id":"0016582"}}}


id: MONDO:0006793
data:
  {"annotated_genes":["SJAG_03429"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87097],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009050"}]},"cv_name":"mondo","definition":"Disease of the glandular, anterior portion of the pituitary (pituitary gland, anterior) resulting in hypersecretion of adenohypophyseal hormones such as growth hormone; prolactin; thyrotropin; luteinizing hormone; follicle stimulating hormone ; and adrenocorticotropic hormone. Hyperpituitarism usually is caused by a functional adenoma.","definition_xrefs":["MESH:D006964"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anterior pituitary gland disorder","termid":"MONDO:0024468"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03429":null},"genotype_count":0,"is_obsolete":false,"name":"hyperpituitarism","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C0020506","MEDGEN:43783","EFO:1000973","MedDRA:10020716","ICD9:253.1","SCTID:10649000","DOID:2444"],"termid":"MONDO:0006793","terms_by_termid":{"MONDO:0009050":null},"xrefs":{"Monarch":{"xref_id":"0006793"}}}


id: PBO:0079550
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene 3","termid":"PBO:0079550"}


id: PBO:0079202
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TSPY like 6","termid":"PBO:0079202"}


id: FYPO:0003075
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a protein kinase activity is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal catalytic activity","termid":"FYPO:0000660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000654","FYPO:0000257"],"is_obsolete":false,"name":"normal protein kinase activity","termid":"FYPO:0003075"}


id: SO:0001344
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"5_methyluridine is a modified uridine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_uridine","termid":"SO:0001277"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"five_methyluridine","secondary_identifiers":["http://en.wikipedia.org/wiki/5-methyluridine","RNAMOD:052"],"synonyms":[{"name":"5-methyluridine","type":"exact"},{"name":"five methyluridine","type":"exact"},{"name":"m5U","type":"exact"}],"termid":"SO:0001344"}


id: PR:Q00472
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A ribonucleotide monophosphatase NagD that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03532","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4-nitrophenylphosphatase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC15D4.15","secondary_identifiers":["UniProtKB:Q00472"],"synonyms":[{"name":"PNPPase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-nagD","type":"exact"}],"termid":"PR:Q00472"}


id: MONDO:0015764
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Mosaic trisomy 20 is a rare chromosomal anomaly syndrome with a highly variable phenotype ranging from normal (in the majority of cases) to a mild, subtle phenotype principally characterized by spinal abnormalities (i.e. stenosis, vertebral fusion, and kyphosis), hypotonia, lifelong constipation, sloped shoulders, skin pigmentation abnormalities (i.e. linear and whorled nevoid hypermelanosis) and significant learning disabilities despite normal intelligence. More severe phenotypes, with patients presenting psychomotor and speech delay, mild facial dysmorphism, cardiac (i.e. ventricular septal defect, dysplastic tricuspid mitral valve) and renal anomalies (e.g. horseshoe kidneys), have also been reported.","definition_xrefs":["Orphanet:1724"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome 20 trisomy","termid":"MONDO:0022757"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mosaic trisomy 20","secondary_identifiers":["GARD:18744"],"synonyms":[{"name":"Mosaic trisomy chromosome 20","type":"exact"},{"name":"Mosaic trisomy type 20","type":"exact"}],"termid":"MONDO:0015764","xrefs":{"Monarch":{"xref_id":"0015764"}}}


id: GO:0090599
data:
  {"annotated_genes":["SJAG_02076","SJAG_04301","SJAG_02718","SJAG_03444","SJAG_03280","SJAG_04363","SJAG_02131","SJAG_03824"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[101961,101962],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004558"},{"annotations":[87736],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106407"},{"annotations":[79280],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004573"},{"annotations":[60186],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004339"},{"annotations":[69120,57907],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051118"},{"annotations":[77187],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004575"}]},"cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of terminal, non-reducing alpha-linked alpha-D-glucose residue with release of alpha-D-glucose.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucosidase activity","termid":"GO:0015926"}],"gene_count":8,"genes_by_uniquename":{"SJAG_02076":null,"SJAG_02131":null,"SJAG_02718":null,"SJAG_03280":null,"SJAG_03444":null,"SJAG_03824":null,"SJAG_04301":null,"SJAG_04363":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016787","GO:0016798","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"alpha-glucosidase activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000003":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-9036729","Reactome:R-HSA-9036727"],"termid":"GO:0090599","terms_by_termid":{"GO:0004339":null,"GO:0004558":null,"GO:0004573":null,"GO:0004575":null,"GO:0051118":null,"GO:0106407":null}}


id: PBO:0060729
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit AB1 pseudogene 1","termid":"PBO:0060729"}


id: FYPO:0003014
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate, or speed, of actomyosin contractile ring disassembly is decreased. Contractile ring disassembly is the part of cytokinesis in which the actomyosin contractile ring is disaggregated into its constituent components.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actomyosin contractile ring disassembly","termid":"FYPO:0003013"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0004803","FYPO:0000002","FYPO:0000032","FYPO:0001320","FYPO:0005447","FYPO:0000631","FYPO:0001985"],"is_obsolete":false,"name":"decreased rate of actomyosin contractile ring disassembly","synonyms":[{"name":"decreased rate of actomyosin contractile ring disassembly during mitotic cell cycle","type":"related"},{"name":"decreased rate of actomyosin contractile ring disassembly during vegetative growth","type":"exact"},{"name":"decreased rate of contractile ring disassembly","type":"exact"},{"name":"decreased rate of cytokinetic contractile ring disassembly","type":"exact"},{"name":"decreased rate of mitotic contractile ring disassembly","type":"exact"},{"name":"reduced rate of actomyosin contractile ring disassembly","type":"exact"}],"termid":"FYPO:0003014"}


id: PBO:0049905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hes family bHLH transcription factor 6","termid":"PBO:0049905"}


id: GO:1902697
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of valine to isobutanol.","definition_xrefs":["GO_REF:0000093","GOC:mengo_curators","GOC:TermGenie","PMID:9748245"],"direct_ancestors":[{"relation_name":"is_a","term_name":"valine metabolic process","termid":"GO:0006573"},{"relation_name":"is_a","term_name":"branched-chain amino acid catabolic process","termid":"GO:0009083"},{"relation_name":"is_a","term_name":"alpha-amino acid catabolic process","termid":"GO:1901606"},{"relation_name":"is_a","term_name":"isobutanol metabolic process","termid":"GO:1901960"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"valine catabolic process to isobutanol","secondary_identifiers":["GO:1990292"],"synonyms":[{"name":"valine breakdown to isobutanol","type":"exact"},{"name":"valine catabolism to isobutanol","type":"exact"},{"name":"valine degradation to isobutanol","type":"exact"}],"termid":"GO:1902697"}


id: SO:0000279
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A transcript that is bound by a protein.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"bound_by_protein","termid":"SO:0000875"},{"relation_name":"is_a","term_name":"transcript","termid":"SO:0000673"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcript_bound_by_protein","synonyms":[{"name":"transcript bound by protein","type":"exact"}],"termid":"SO:0000279"}


id: PBO:0034770
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDP-diacylglycerol-glycerol-3-phosphate3-phosphatidyltransferase Pgs1","termid":"PBO:0034770"}


id: PBO:0082468
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Calmodulin; Ca2+ binding protein that regulates Ca2+ independent processes (mitosis, bud growth, actin organization, endocytosis, etc.) and Ca2+ dependent processes (stress-activated pathways), targets include Nuf1p, Myo2p and calcineurin; binds to the Hog1p MAPK in response to hyperosmotic stress; potentiates membrane tubulation and constriction mediated by the Rvs161p-Rvs167p complex; human CALM1 or CALM2 functionally complement repression induced inviability","termid":"PBO:0082468"}


id: GO:0018298
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The covalent or noncovalent attachment of a chromophore to a protein.","definition_xrefs":["GOC:ma"],"gene_count":0,"genotype_count":0,"name":"obsolete protein-chromophore linkage (obsolete GO:0018298)","termid":"GO:0018298"}


id: PBO:0059161
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MPRIP antisense RNA 1","termid":"PBO:0059161"}


id: GO:0000166
data:
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id: MONDO:0008868
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"biliary malformation with renal tubular insufficiency","secondary_identifiers":["SCTID:235914003","MESH:C537726","MEDGEN:98009","OMIM:210550","UMLS:C0400972"],"synonyms":[{"name":"biliary malformation with renal tubular insufficiency","type":"exact"},{"name":"cholestatic jaundice and renal tubular insufficiency","type":"related"}],"termid":"MONDO:0008868","xrefs":{"Monarch":{"xref_id":"0008868"}}}


id: PBO:0051371
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 3D-25 (pseudogene)","termid":"PBO:0051371"}


id: PBO:0091274
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"I:g.682994delC","termid":"PBO:0091274"}


id: PBO:0044414
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 2 subfamily S member 1","termid":"PBO:0044414"}


id: MONDO:0010698
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare form of hereditary optic atrophy, seen in only 4 families to date, with an onset in early childhood, characterized by progressive loss of visual acuity, significant optic nerve pallor and occasionally additional neurological manifestations, with females being unaffected.","definition_xrefs":["Orphanet:98890"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"},{"relation_name":"is_a","term_name":"hereditary optic atrophy","termid":"MONDO:0043878"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"optic atrophy 2","secondary_identifiers":["MESH:C537125","MEDGEN:326915","GARD:10199","OMIM:311050","SCTID:721200000","UMLS:C1839576","DOID:0111443"],"synonyms":[{"name":"OPA2","type":"exact"},{"name":"non-Leber type optic atrophy with early-onset","type":"exact"},{"name":"optic atrophy 2","type":"exact"},{"name":"optic atrophy 2, X-linked","type":"exact"},{"name":"optic atrophy type 2","type":"exact"},{"name":"optic atrophy, X-linked","type":"related"},{"name":"optic atrophy, non-Leber type, with early onset","type":"related"}],"termid":"MONDO:0010698","xrefs":{"Monarch":{"xref_id":"0010698"}}}


id: FYPO:0003219
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at positions 9 and 14 of histone H3 occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete decreased histone H3-K9K14 acetylation during vegetative growth (obsolete FYPO:0003219)","synonyms":[{"name":"decreased histone H3 K9K14 acetylation during vegetative growth","type":"exact"},{"name":"decreased histone H3-K9 and K14 acetylation during vegetative growth","type":"exact"},{"name":"decreased histone H3-K9K14 acetylation during mitotic cell cycle","type":"related"},{"name":"decreased histone lysine H3 K9K14 acetylation during vegetative growth","type":"exact"},{"name":"reduced histone H3-K9K14 acetylation during vegetative growth","type":"exact"}],"termid":"FYPO:0003219"}


id: PBO:0063033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"p21 (RAC1) activated kinase 1","termid":"PBO:0063033"}


id: PBO:0029999
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-P-bodies_present_in_decreased_numbers_during_glucose_starvation","termid":"PBO:0029999"}


id: FYPO:0004977
data:
  {"alleles_by_uniquename":{"SJAG_04280:allele-2":{"allele_type":"amino_acid_mutation","description":"T582G","gene_uniquename":"SJAG_04280","name":"wee1-as8","uniquename":"SJAG_04280:allele-2"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[119856],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0002870"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to a new cell tip is increased.","definition_xrefs":["PomBase:mah","PMID:24146635"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein localization to cell tip during vegetative growth","termid":"FYPO:0002852"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04280":null,"SJAG_04522":null},"genotype_count":1,"genotypes_by_uniquename":{"wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"wee1-as8(T582G aa)","display_uniquename":"wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-2","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0000138"],"is_obsolete":false,"name":"increased protein localization to new cell tip","references_by_uniquename":{"PMID:30664646":null},"single_locus_annotated_genes":["SJAG_04280"],"single_locus_genotype_uniquenames":["wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"increased protein localisation to new cell tip","type":"exact"},{"name":"increased protein localization to new cell end","type":"exact"},{"name":"increased protein localization to new cell tip during mitotic cell cycle","type":"related"},{"name":"increased protein localization to new cell tip during vegetative growth","type":"exact"}],"termid":"FYPO:0004977","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYECO:0000338":null,"FYPO:0002870":null}}


id: GO:0140372
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H3 by the addition of one or more ubiquitin groups.","definition_xrefs":["PMID:31468675","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H3 ubiquitination (obsolete GO:0140372)","synonyms":[{"name":"histone H3 ubiquitylation","type":"exact"}],"termid":"GO:0140372"}


id: MONDO:0007703
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete heart, malformation of (obsolete MONDO:0007703)","termid":"MONDO:0007703","xrefs":{"Monarch":{"xref_id":"0007703"}}}


id: SO:0002051
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A promoter whereby activity is induced by the presence or absence of biotic or abiotic factors.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"promoter","termid":"SO:0000167"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inducible_promoter","synonyms":[{"name":"inducible promoter","type":"exact"}],"termid":"SO:0002051"}


id: FYPO:0007961
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the spindle length decreases abruptly at anaphase onset.","definition_xrefs":["PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic spindle elongation","termid":"FYPO:0000131"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"part_of","termid":"FYPO:0000337"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000337","FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0000054","FYPO:0000631","FYPO:0000641"],"is_obsolete":false,"name":"transient abrupt spindle length decrease at anaphase onset","termid":"FYPO:0007961"}


id: MONDO:0004535
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A non-gestational choriocarcinoma that arises from the ovary and occurs in children.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pediatric ovarian germ cell tumor","termid":"MONDO:0003760"},{"relation_name":"is_a","term_name":"non-gestational ovarian choriocarcinoma","termid":"MONDO:0004322"},{"relation_name":"is_a","term_name":"malignant childhood germ cell neoplasm","termid":"MONDO:0004479"},{"relation_name":"is_a","term_name":"childhood gonadal germ cell tumor","termid":"MONDO:0020577"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"childhood choriocarcinoma of the ovary","secondary_identifiers":["MEDGEN:234135","NCIT:C6549","UMLS:C1332987","DOID:8336"],"synonyms":[{"name":"childhood choriocarcinoma of ovary","type":"exact"},{"name":"childhood ovarian choriocarcinoma","type":"exact"},{"name":"choriocarcinoma of ovary of childhood","type":"exact"},{"name":"paediatric choriocarcinoma of ovary","type":"exact"},{"name":"paediatric choriocarcinoma of the ovary","type":"exact"},{"name":"paediatric ovarian choriocarcinoma","type":"exact"},{"name":"pediatric choriocarcinoma of ovary","type":"exact"},{"name":"pediatric choriocarcinoma of the ovary","type":"exact"},{"name":"pediatric ovarian choriocarcinoma","type":"exact"}],"termid":"MONDO:0004535","xrefs":{"Monarch":{"xref_id":"0004535"}}}


id: PBO:0111681
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PARG pseudogene 1","termid":"PBO:0111681"}


id: MONDO:0800201
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"androgenetic alopecia","termid":"MONDO:0005339"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"baldness, male pattern","secondary_identifiers":["MEDGEN:904995","UMLS:C4083212"],"synonyms":[{"name":"MPB","type":"exact"}],"termid":"MONDO:0800201","xrefs":{"Monarch":{"xref_id":"0800201"}}}


id: GO:0120211
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Fusion of the membrane of proacrosomal vesicle with the membrane of another proacrosomal vesicle to form the acrosome.","definition_xrefs":["GOC:krc","PMID:29991750"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle fusion","termid":"GO:0006906"},{"relation_name":"part_of","term_name":"acrosome assembly","termid":"GO:0001675"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0016192","GO:0061024","GO:0044085","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"proacrosomal vesicle fusion","termid":"GO:0120211"}


id: GO:0002232
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The movement of an immune cell in response to an external stimulus contributing to an inflammatory response.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukocyte migration involved in inflammatory response","termid":"GO:0002523"},{"relation_name":"is_a","term_name":"leukocyte chemotaxis","termid":"GO:0030595"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"leukocyte chemotaxis involved in inflammatory response","synonyms":[{"name":"immune cell chemotaxis during inflammatory response","type":"related"},{"name":"leucocyte chemotaxis during inflammatory response","type":"related"},{"name":"leukocyte chemotaxis during inflammatory response","type":"related"}],"termid":"GO:0002232"}


id: PBO:0067244
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 317, pseudogene","termid":"PBO:0067244"}


id: PBO:0057352
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 548a-1","termid":"PBO:0057352"}


id: PBO:0086970
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Regulatory subunit of acetolactate synthase; acetolactate synthase catalyzes the first step of branched-chain amino acid biosynthesis; enhances activity of the Ilv2p catalytic subunit, localizes to mitochondria","termid":"PBO:0086970"}


id: PBO:0028217
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-septation_following_abnormal_chromosome_segregation,_with_binucleate_and_anucleate_compartment_formation_during_cellular_response_to_salt_stress","termid":"PBO:0028217"}


id: GO:1901999
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving homogentisate.","definition_xrefs":["GOC:TermGenie","PMID:22980205"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenol-containing compound metabolic process","termid":"GO:0018958"},{"relation_name":"is_a","term_name":"monocarboxylic acid metabolic process","termid":"GO:0032787"},{"relation_name":"is_a","term_name":"benzene-containing compound metabolic process","termid":"GO:0042537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"homogentisate metabolic process","synonyms":[{"name":"homogentisate metabolism","type":"exact"}],"termid":"GO:1901999"}


id: GO:1990897
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A protein complex that phosphorylates serine 2 residues in the CTD domain of productively elongating large subunits of DNA-directed RNA polymerase II, holoenzyme. In S. cerevisiae this complex consists of CTK1/CTK2/CTK3, in S. pombe Lsk1/Lsc1/Lsg1. Human CTK1 homologs include CDK12/13.","definition_xrefs":["PMID:20952539","PMID:24879308"],"gene_count":0,"genotype_count":0,"name":"obsolete CTDK-1 complex (obsolete GO:1990897)","termid":"GO:1990897"}


id: GO:0071313
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a caffeine stimulus. Caffeine is an alkaloid found in numerous plant species, where it acts as a natural pesticide that paralyzes and kills certain insects feeding upon them.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to caffeine","termid":"GO:0031000"},{"relation_name":"is_a","term_name":"cellular response to alkaloid","termid":"GO:0071312"},{"relation_name":"is_a","term_name":"cellular response to purine-containing compound","termid":"GO:0071415"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to caffeine","termid":"GO:0071313"}


id: PBO:0073012
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sodium channel modifier 1","termid":"PBO:0073012"}


id: PBO:0064134
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyruvate kinase M1/2 pseudogene 1","termid":"PBO:0064134"}


id: PBO:0062523
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 8 subfamily S member 1","termid":"PBO:0062523"}


id: PBO:0035737
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_extent_and_duration_of_protein-protein_interaction","termid":"PBO:0035737"}


id: PBO:0066632
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rab interacting lysosomal protein like 1","termid":"PBO:0066632"}


id: PBO:0054429
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1825","termid":"PBO:0054429"}


id: MONDO:0032817
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with cataracts, poor growth, and dysmorphic facies","secondary_identifiers":["DOID:0070346","UMLS:C5231414","MEDGEN:1684661","OMIM:618571"],"synonyms":[{"name":"NDCAGF","type":"related"},{"name":"NEURODEVELOPMENTAL DISORDER WITH CATARACTS, POOR GROWTH, AND DYSMORPHIC FACIES","type":"related"}],"termid":"MONDO:0032817","xrefs":{"Monarch":{"xref_id":"0032817"}}}


id: GO:0008413
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 8-oxo-7,8-dihydroguanosine triphosphate (8-oxo-GTP) + H2O = 8-oxo-7,8-dihydroguanosine diphosphate (8-oxo-GDP) + phosphate. 8-oxo-7,8-dihydroguanosine triphosphate (8-oxo-GTP) is the oxidised form of the free guanine nucleotide and can act as a potent mutagenic substrate for transcription.","definition_xrefs":["PMID:15878881","RHEA:60032"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside triphosphate diphosphatase activity","termid":"GO:0047429"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0047429"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0003674","GO:0047429"],"is_obsolete":false,"name":"8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity","secondary_identifiers":["EC:3.6.1.69"],"synonyms":[{"name":"7,8-dihydro-8-oxoguanine-triphosphatase activity","type":"exact"},{"name":"8-oxo-7,8-dihydroguanine triphosphatase activity","type":"exact"},{"name":"8-oxo-7,8-dihydroguanosine triphosphatase activity","type":"exact"},{"name":"8-oxo-GTPase activity","type":"exact"}],"termid":"GO:0008413"}


id: GO:0019038
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The name given to a viral genome after it has been integrated into the host genome; particularly applies to retroviruses and is a required part of the retroviral replication cycle.","definition_xrefs":["ISBN:0121585336"],"gene_count":0,"genotype_count":0,"name":"obsolete provirus (obsolete GO:0019038)","secondary_identifiers":["Wikipedia:Provirus"],"termid":"GO:0019038"}


id: PBO:0029799
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-short,_misoriented_actin_cables","termid":"PBO:0029799"}


id: PBO:0043524
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase assembly factor 6","termid":"PBO:0043524"}


id: SO:0000507
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A non functional descendant of an exon, part of a pseudogene.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pseudogenic_region","termid":"SO:0000462"},{"relation_name":"non_functional_homolog_of","term_name":"exon","termid":"SO:0000147"},{"relation_name":"part_of","term_name":"pseudogenic_transcript","termid":"SO:0000516"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pseudogenic_exon","synonyms":[{"name":"pseudogenic exon","type":"exact"}],"termid":"SO:0000507"}


id: PBO:0053262
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LIF receptor subunit alpha","termid":"PBO:0053262"}


id: GO:0019604
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation from toluene of catechol, dihydroxybenzene, by successive oxidations followed by loss of carbon dioxide (CO2).","definition_xrefs":["MetaCyc:TOLUENE-DEG-CATECHOL-PWY"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catechol-containing compound metabolic process","termid":"GO:0009712"},{"relation_name":"is_a","term_name":"toluene oxidation","termid":"GO:0019600"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"toluene oxidation to catechol","secondary_identifiers":["UM-BBD_pathwayID:tol"],"termid":"GO:0019604"}


id: MONDO:0015203
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital heart malformation","termid":"MONDO:0019512"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coronary artery congenital malformation","secondary_identifiers":["UMLS:C4531298","GARD:1534","MedDRA:10061060","MEDGEN:1612789","icd11.foundation:902783759","Orphanet:1081"],"termid":"MONDO:0015203","xrefs":{"Monarch":{"xref_id":"0015203"}}}


id: GO:1903556
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of tumor necrosis factor superfamily cytokine production.","definition_xrefs":["PMID:24187568","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokine production","termid":"GO:0001818"},{"relation_name":"is_a","term_name":"regulation of tumor necrosis factor superfamily cytokine production","termid":"GO:1903555"},{"relation_name":"negatively_regulates","term_name":"tumor necrosis factor superfamily cytokine production","termid":"GO:0071706"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of tumor necrosis factor superfamily cytokine production","synonyms":[{"name":"down regulation of TNF superfamily production","type":"related"},{"name":"down regulation of TNFSF cytokine production","type":"exact"},{"name":"down regulation of tumor necrosis factor superfamily cytokine production","type":"exact"},{"name":"down-regulation of TNF superfamily production","type":"related"},{"name":"down-regulation of TNFSF cytokine production","type":"exact"},{"name":"down-regulation of tumor necrosis factor superfamily cytokine production","type":"exact"},{"name":"downregulation of TNF superfamily production","type":"related"},{"name":"downregulation of TNFSF cytokine production","type":"exact"},{"name":"downregulation of tumor necrosis factor superfamily cytokine production","type":"exact"},{"name":"inhibition of TNF superfamily production","type":"related"},{"name":"inhibition of TNFSF cytokine production","type":"narrow"},{"name":"inhibition of tumor necrosis factor superfamily cytokine production","type":"narrow"},{"name":"negative regulation of TNF superfamily production","type":"related"},{"name":"negative regulation of TNFSF cytokine production","type":"exact"}],"termid":"GO:1903556"}


id: GO:0034465
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbon monoxide (CO) stimulus.","definition_xrefs":["GOC:ecd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to carbon monoxide","termid":"GO:0034465"}


id: PBO:0067284
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 366, pseudogene","termid":"PBO:0067284"}


id: PBO:0074125
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 30 member 8","termid":"PBO:0074125"}


id: GO:0044033
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A metabolic process - chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances - which involves more than one organism.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete multi-organism metabolic process (obsolete GO:0044033)","synonyms":[{"name":"multi-organism metabolism","type":"exact"},{"name":"multi-organismal metabolic process","type":"exact"},{"name":"multi-organismal metabolism","type":"exact"}],"termid":"GO:0044033"}


id: PBO:0056984
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 30c-2","termid":"PBO:0056984"}


id: MONDO:0016146
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A group of muscle diseases with basis in CAV3, which encodes caveolin-3, a muscle-specific membrane protein and the principal component of caveolae membrane in muscle cells in vivo. It is the only gene in which pathogenic variants are known to cause caveolinopathies. Sequence analysis identifies pathogenic variants in more than 99% of affected individuals","direct_ancestors":[{"relation_name":"is_a","term_name":"muscle tissue disorder","termid":"MONDO:0003939"},{"relation_name":"is_a","term_name":"qualitative or quantitative protein defects in neuromuscular diseases","termid":"MONDO:0016139"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"caveolinopathy","secondary_identifiers":["MEDGEN:1826055","Orphanet:207078","UMLS:C5679790","GARD:20394"],"synonyms":[{"name":"qualitative or quantitative defects of caveolin-3","type":"exact"}],"termid":"MONDO:0016146","xrefs":{"Monarch":{"xref_id":"0016146"}}}


id: PBO:0070551
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 17","termid":"PBO:0070551"}


id: PBO:0082439
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"B-type cyclin involved in cell cycle progression; activates Cdc28p to promote the G2/M transition; may be involved in DNA replication and spindle assembly; accumulates during S phase and G2, then targeted for ubiquitin-mediated degradation; relative distribution to the nucleus increases upon DNA replication stress; CLB3 has a paralog, CLB4, that arose from the whole genome duplication","termid":"PBO:0082439"}


id: GO:0033103
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which proteins are transferred into the extracellular milieu or directly into host cells by the type VI secretion system. Proteins secreted by this system do not require an N-terminal signal sequence.","definition_xrefs":["PMID:16763151","GOC:mlg","PMID:16432199"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein secretion","termid":"GO:0009306"},{"relation_name":"is_a","term_name":"protein transmembrane transport","termid":"GO:0071806"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"protein secretion by the type VI secretion system","synonyms":[{"name":"protein secretion by the T6SS","type":"exact"},{"name":"protein secretion by the type VI protein secretion system","type":"exact"},{"name":"type VI protein secretion system","type":"exact"}],"termid":"GO:0033103"}


id: GO:0106356
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-hydroxybenzoate + H+ + NADPH + O2 = 3,4-dihydroxybenzoate + H2O + NADP+.","definition_xrefs":["RHEA:19477"],"direct_ancestors":[{"relation_name":"is_a","term_name":"4-hydroxybenzoate 3-monooxygenase [NAD(P)H] activity","termid":"GO:0018671"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"4-hydroxybenzoate 3-monooxygenase (NADPH) activity","synonyms":[{"name":"4-hydroxybenzoate 3-monooxygenase [NADPH] activity","type":"exact"}],"termid":"GO:0106356"}


id: MONDO:0100208
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An epilepsy syndrome associated with infantile period seizures, complete or nearly-complete seizure remission afterwards, usually good developmental outcome, and dominant transmission with high penetrance in pedigrees. For most affected infants, seizures begin within the first week after term birth. In a minority, however, seizures can begin after the first week but within the first several months of life. At onset, seizures may be highly recurrent, and often feature unilateral tonic limb stiffening that may alternate sides from seizure to seizure, accompanied by cyanosis and autonomic features. Limb shaking movements occur, but not in the evolving rhythmic pattern of tonic-clonic convulsions in older individuals. Neurological examination of the infant is normal between seizures. Although these seizures remit by 4-12 months of age in the majority, 15-30% of those affected have one or more seizure recurrences later, including febrile seizures, focal-onset seizures, and convulsions. Although most affected children show typical development, individuals with mild learning difficulties have been reported in families where the majority develop typically.","direct_ancestors":[{"relation_name":"is_a","term_name":"neonatal/infantile-onset self-limited epilepsy syndrome","termid":"MONDO:0800488"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"self-limited familial neonatal-infantile epilepsy","synonyms":[{"name":"SeLFNIE","type":"exact"}],"termid":"MONDO:0100208","xrefs":{"Monarch":{"xref_id":"0100208"}}}


id: PBO:0075049
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 116-12","termid":"PBO:0075049"}


id: MONDO:0015785
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Prader-Willi syndrome","termid":"MONDO:0008300"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"},{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0700092","MONDO:0002320"],"is_obsolete":false,"name":"Prader-Willi syndrome due to translocation","secondary_identifiers":["Orphanet:177907","UMLS:C5680509","GARD:17074","MEDGEN:1826085"],"termid":"MONDO:0015785","xrefs":{"Monarch":{"xref_id":"0015785"}}}


id: PBO:0030009
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-RNA_absent_from_cell","termid":"PBO:0030009"}


id: MONDO:0004471
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The inflammation of one or more joints caused by a bacterial infection within the joint space. Symptoms include pain, stiffness, and decreased range of motion in the affected joint.","definition_xrefs":["NCIT:C26699"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bacterial infectious disease","termid":"MONDO:0005113"},{"relation_name":"is_a","term_name":"infective arthritis","termid":"MONDO:0042485"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bacterial arthritis","secondary_identifiers":["ICD9:711.97","ICD9:711.0","ICD9:711.96","MEDGEN:308434","ICD9:711.92","UMLS:C1692886","ICD9:711.95","ICD9:711.40","NANDO:2200437","SCTID:48245008","ICD9:711.9","ICD9:711.90","DOID:813","ICD9:711.93","MESH:D001170","ICD9:711.94","EFO:1001351","ICD9:711.91"],"synonyms":[{"name":"infectious arthritis","type":"broad"},{"name":"pyogenic arthritis","type":"exact"},{"name":"septic arthritis","type":"exact"}],"termid":"MONDO:0004471","xrefs":{"Monarch":{"xref_id":"0004471"}}}


id: GO:0042401
data:
  {"annotated_genes":["SJAG_02505","SJAG_03632","SJAG_05007","SJAG_00043","SJAG_01455","SJAG_04546","SJAG_03167","SJAG_04481"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[74615,73671,77573,79599],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000162"},{"annotations":[111556],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0170066"},{"annotations":[76200],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033387"},{"annotations":[75217,78176],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008295"},{"annotations":[78175,103118],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006597"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways occurring at the level of individual cells resulting in the formation of any of a group of naturally occurring, biologically active amines, such as norepinephrine, histamine, and serotonin, many of which act as neurotransmitters.","definition_xrefs":["ISBN:0395825172","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biogenic amine metabolic process","termid":"GO:0006576"},{"relation_name":"is_a","term_name":"amine biosynthetic process","termid":"GO:0009309"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00043":null,"SJAG_01455":null,"SJAG_02505":null,"SJAG_03167":null,"SJAG_03632":null,"SJAG_04481":null,"SJAG_04546":null,"SJAG_05007":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"biogenic amine biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"biogenic amine anabolism","type":"exact"},{"name":"biogenic amine biosynthesis","type":"exact"},{"name":"biogenic amine formation","type":"exact"},{"name":"biogenic amine synthesis","type":"exact"},{"name":"cellular biogenic amine biosynthetic process","type":"exact"}],"termid":"GO:0042401","terms_by_termid":{"GO:0000162":null,"GO:0006597":null,"GO:0008295":null,"GO:0033387":null,"GO:0170066":null}}


id: GO:0032369
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of lipid transport","termid":"GO:0032368"},{"relation_name":"is_a","term_name":"negative regulation of transport","termid":"GO:0051051"},{"relation_name":"is_a","term_name":"negative regulation of lipid localization","termid":"GO:1905953"},{"relation_name":"negatively_regulates","term_name":"lipid transport","termid":"GO:0006869"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"negative regulation of lipid transport","synonyms":[{"name":"down regulation of lipid transport","type":"exact"},{"name":"down-regulation of lipid transport","type":"exact"},{"name":"downregulation of lipid transport","type":"exact"},{"name":"inhibition of lipid transport","type":"narrow"}],"termid":"GO:0032369"}


id: GO:0042371
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of any of the forms of vitamin K, quinone-derived vitamins which are involved in the synthesis of blood-clotting factors in mammals.","definition_xrefs":["GOC:jl","PMID:24489112"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ketone biosynthetic process","termid":"GO:0042181"},{"relation_name":"is_a","term_name":"fat-soluble vitamin biosynthetic process","termid":"GO:0042362"},{"relation_name":"is_a","term_name":"vitamin K metabolic process","termid":"GO:0042373"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006766"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006766","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"vitamin K biosynthetic process","synonyms":[{"name":"naphthoquinone metabolic process","type":"broad"},{"name":"naphthoquinone metabolism","type":"broad"},{"name":"vitamin K anabolism","type":"exact"},{"name":"vitamin K biosynthesis","type":"exact"},{"name":"vitamin K formation","type":"exact"},{"name":"vitamin K synthesis","type":"exact"}],"termid":"GO:0042371"}


id: PBO:0090068
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"succinate-semialdehyde dehydrogenase [NAD(P)+]","termid":"PBO:0090068"}


id: PBO:0040602
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BAG cochaperone 6","termid":"PBO:0040602"}


id: MOD:00869
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-aspartic acid residue to L-alanine.","definition_xrefs":["RESID:AA0001#ASP","PubMed:17138938"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-alanine residue","termid":"MOD:00010"},{"relation_name":"is_a","term_name":"modified L-aspartic acid residue","termid":"MOD:00904"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-alanine residue (Asp)","synonyms":[{"name":"(2S)-2-aminopropanoic acid","type":"exact"},{"name":"2-aminopropionic acid","type":"exact"},{"name":"2-azanylpropanoic acid","type":"exact"},{"name":"Asp(Ala)","type":"exact"},{"name":"L-alanine","type":"exact"},{"name":"MOD_RES Beta-decarboxylated aspartate","type":"exact"},{"name":"alpha-alanine","type":"exact"},{"name":"alpha-aminopropionic acid","type":"exact"}],"termid":"MOD:00869"}


id: PBO:0000119
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"siderophore-iron transporter Str3","termid":"PBO:0000119"}


id: PR:O13775
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- gus1 gene.","definition_xrefs":["UniProtKB:O13775","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamate--tRNA ligase, cytoplasmic (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17A5.15c","synonyms":[{"name":"GluRS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-gus1","type":"exact"},{"name":"glutamyl-tRNA synthetase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13775"}


id: PBO:0077620
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thymosin beta 10 pseudogene 1","termid":"PBO:0077620"}


id: GO:0050476
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + acetylenedicarboxylate = CO2 + pyruvate.","definition_xrefs":["EC:4.1.1.78"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"acetylenedicarboxylate decarboxylase activity","secondary_identifiers":["RHEA:17733","MetaCyc:4.1.1.78-RXN"],"synonyms":[{"name":"acetylenedicarboxylate carboxy-lyase (pyruvate-forming)","type":"related"},{"name":"acetylenedicarboxylate carboxy-lyase activity","type":"related"},{"name":"acetylenedicarboxylate hydrase activity","type":"related"},{"name":"acetylenedicarboxylate hydratase activity","type":"related"}],"termid":"GO:0050476"}


id: PBO:0038427
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-2-macroglobulin pseudogene 1","termid":"PBO:0038427"}


id: PBO:0048988
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glypican 1","termid":"PBO:0048988"}


id: PBO:0002317
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"previusly annotated as dubious","termid":"PBO:0002317"}


id: PBO:0034357
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-develops_from_part_of","termid":"PBO:0034357"}


id: GO:0045672
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of osteoclast differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of myeloid leukocyte differentiation","termid":"GO:0002763"},{"relation_name":"is_a","term_name":"regulation of osteoclast differentiation","termid":"GO:0045670"},{"relation_name":"positively_regulates","term_name":"osteoclast differentiation","termid":"GO:0030316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of osteoclast differentiation","synonyms":[{"name":"activation of osteoclast differentiation","type":"narrow"},{"name":"stimulation of osteoclast differentiation","type":"narrow"},{"name":"up regulation of osteoclast differentiation","type":"exact"},{"name":"up-regulation of osteoclast differentiation","type":"exact"},{"name":"upregulation of osteoclast differentiation","type":"exact"}],"termid":"GO:0045672"}


id: FYECO:0000160
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which tacrolimus was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ tacrolimus","secondary_identifiers":["FYECO:0000029"],"synonyms":[{"name":"FK506 added","type":"exact"},{"name":"tacrolimus added","type":"exact"}],"termid":"FYECO:0000160"}


id: GO:0021532
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regionalization process that regulates the coordinated growth that establishes the non-random spatial arrangement of the neural tube.","definition_xrefs":["GOC:dgh","GOC:dph","GOC:jid","GOC:cls","GO_REF:0000021"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regionalization","termid":"GO:0003002"},{"relation_name":"part_of","term_name":"neural tube development","termid":"GO:0021915"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neural tube patterning","termid":"GO:0021532"}


id: GO:0009175
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of pyrimidine ribonucleoside monophosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with phosphate on the sugar.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleoside monophosphate catabolic process","termid":"GO:0009131"},{"relation_name":"is_a","term_name":"ribonucleoside monophosphate catabolic process","termid":"GO:0009158"},{"relation_name":"is_a","term_name":"pyrimidine ribonucleoside monophosphate metabolic process","termid":"GO:0009173"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"pyrimidine ribonucleoside monophosphate catabolic process","synonyms":[{"name":"pyrimidine ribonucleoside monophosphate breakdown","type":"exact"},{"name":"pyrimidine ribonucleoside monophosphate catabolism","type":"exact"},{"name":"pyrimidine ribonucleoside monophosphate degradation","type":"exact"}],"termid":"GO:0009175"}


id: PBO:0056788
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microfibril associated protein 4","termid":"PBO:0056788"}


id: PBO:0040843
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BLM RecQ like helicase","termid":"PBO:0040843"}


id: GO:0090671
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which telomerase RNA (TERC) is transported to, or maintained in, a Cajal body.","definition_xrefs":["PMID:25467444","GOC:BHF_telomere","GOC:nc","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA localization to Cajal body","termid":"GO:0090670"},{"relation_name":"is_a","term_name":"telomerase RNA localization","termid":"GO:0090672"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"telomerase RNA localization to Cajal body","termid":"GO:0090671"}


id: GO:0032140
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a double-stranded DNA region containing a single adenine insertion or a deletion that results in an unpaired adenine.","definition_xrefs":["GOC:mah","GOC:vk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"single base insertion or deletion binding","termid":"GO:0032138"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003677"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003677","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"single adenine insertion binding","termid":"GO:0032140"}


id: PBO:0071831
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S2 pseudogene 26","termid":"PBO:0071831"}


id: PBO:0018175
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitotic spindle checkpoint kinase Bub1","termid":"PBO:0018175"}


id: MOD:01770
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-threonine residue to O-palmitoyl-L-threonine amide.","definition_xrefs":["RESID:AA0097#var","RESID:AA0079#var","PubMed:8413602"],"direct_ancestors":[{"relation_name":"has_functional_parent","term_name":"O-palmitoyl-L-threonine","termid":"MOD:00088"},{"relation_name":"has_functional_parent","term_name":"L-threonine amide","termid":"MOD:00106"},{"relation_name":"is_a","term_name":"O3-acylated L-threonine","termid":"MOD:02004"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"O-palmitoyl-L-threonine amide","synonyms":[{"name":"(2S,3R)-2-amino-3-(hexadecanoyloxy)butanamide","type":"exact"},{"name":"OPamThrN","type":"exact"}],"termid":"MOD:01770"}


id: PBO:0003929
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chaperone activator Aha1 (predicted)","termid":"PBO:0003929"}


id: PBO:0044700
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD-box helicase 3 pseudogene 3","termid":"PBO:0044700"}


id: PBO:0017699
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial pyrimidine nucleotide transmembrane transporter Rim2 (predicted)","termid":"PBO:0017699"}


id: MONDO:0004252
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neuroendocrine tumor that arises from the small intestine and produces glucagon-like peptides. Morphologically, it is characterized by the presence of neoplastic cells forming tubular or trabecular patterns.","definition_xrefs":["NCIT:C27452"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"small intestine cancer","termid":"MONDO:0000956"},{"relation_name":"is_a","term_name":"small intestine neuroendocrine tumor, well differentiated, low or intermediate grade","termid":"MONDO:0002995"},{"relation_name":"is_a","term_name":"L-cell glucagon-like peptide-producing neuroendocrine tumor","termid":"MONDO:0004211"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"small intestinal L-cell glucagon-like peptide producing tumor","secondary_identifiers":["UMLS:C3274143","DOID:7506","MEDGEN:475776"],"synonyms":[{"name":"L-cell glucagon-like peptide-producing neuroendocrine tumor of small intestine","type":"exact"},{"name":"L-cell glucagon-like peptide-producing neuroendocrine tumour of small intestine","type":"exact"},{"name":"small intestinal L-cell glucagon-like peptide-producing NET","type":"exact"},{"name":"small intestinal L-cell glucagon-like peptide-producing neuroendocrine tumor","type":"exact"},{"name":"small intestinal L-cell glucagon-like peptide-producing neuroendocrine tumour","type":"exact"},{"name":"small intestinal L-cell, glucagon-like peptide-producing neuroendocrine tumor","type":"exact"},{"name":"small intestinal L-cell, glucagon-like peptide-producing neuroendocrine tumour","type":"exact"},{"name":"small intestine L-cell glucagon-like peptide-producing neuroendocrine tumor","type":"exact"},{"name":"small intestine L-cell glucagon-like peptide-producing neuroendocrine tumour","type":"exact"}],"termid":"MONDO:0004252","xrefs":{"Monarch":{"xref_id":"0004252"}}}


id: PBO:0056682
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MEFV innate immunity regulator, pyrin","termid":"PBO:0056682"}


id: FYPO:0002773
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which a cell undergoes an abnormal nuclear division after meiosis II is complete.","definition_xrefs":["PMID:23628763","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal meiosis","termid":"FYPO:0000051"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0000631"],"is_obsolete":false,"name":"third meiotic division","synonyms":[{"name":"meiosis III","type":"related"},{"name":"meiosis termination defect","type":"exact"},{"name":"third meiotic nuclear division","type":"exact"}],"termid":"FYPO:0002773"}


id: PBO:0061567
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-terminal asparagine amidase pseudogene 1","termid":"PBO:0061567"}


id: MOD:01852
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-cysteine residue and an L-lysine residue to release hydrogen sulfide and form 2-amino-6-(2-amino-2-carboxyethylamino)hexanoic acid.","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"uncategorized crosslinked residues","termid":"MOD:00692"},{"relation_name":"is_a","term_name":"L-lysinoalanine","termid":"MOD:01853"},{"relation_name":"is_a","term_name":"crosslinked L-cysteine residue","termid":"MOD:02044"},{"relation_name":"is_a","term_name":"crosslinked L-lysine residue","termid":"MOD:02051"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"L-lysinoalanine (Lys-Cys)","synonyms":[{"name":"Lysinoalanine (from Cysteine)","type":"exact"}],"termid":"MOD:01852"}


id: GO:0102167
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: H2O + an N-acetyl-alpha-D-glucosaminyl-L-serine-[glycoprotein] = N-acetyl-alpha-D-glucosaminide + a [protein]-L-serine.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete [protein]-3-O-(N-acetyl-D-glucosaminyl)-L-serine O-N-acetyl-alpha-D-glucosaminase activity (obsolete GO:0102167)","termid":"GO:0102167"}


id: GO:1902272
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of (R)-carnitine transmembrane transport.","definition_xrefs":["GOC:TermGenie","PMID:23755272"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of transmembrane transport","termid":"GO:0034762"},{"relation_name":"regulates","term_name":"(R)-carnitine transmembrane transport","termid":"GO:1902270"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0006810"],"is_obsolete":false,"name":"regulation of (R)-carnitine transmembrane transport","termid":"GO:1902272"}


id: PBO:0040688
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"breast carcinoma amplified sequence 4","termid":"PBO:0040688"}


id: PR:O74828
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ESF1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02698","PANTHER:PTHR12202:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre-rRNA-processing protein esf1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1734.01c","secondary_identifiers":["UniProtKB:O74828"],"synonyms":[{"name":"Spom972h-ESF1","type":"exact"}],"termid":"PR:O74828"}


id: MONDO:0002271
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A carcinoma that arises from glandular epithelial cells of the colon","direct_ancestors":[{"relation_name":"is_a","term_name":"colon carcinoma","termid":"MONDO:0002032"},{"relation_name":"is_a","term_name":"colorectal adenocarcinoma","termid":"MONDO:0005008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992"],"is_obsolete":false,"name":"colon adenocarcinoma","secondary_identifiers":["ONCOTREE:COAD","EFO:1001949","NCIT:C4349","UMLS:C0338106","DOID:234","MEDGEN:137834"],"synonyms":[{"name":"COAD","type":"related"},{"name":"adenocarcinoma - colon","type":"exact"},{"name":"adenocarcinoma of colon","type":"exact"},{"name":"adenocarcinoma of the colon","type":"exact"},{"name":"colon adenocarcinoma","type":"exact"},{"name":"colonic adenocarcinoma","type":"exact"}],"termid":"MONDO:0002271","xrefs":{"Monarch":{"xref_id":"0002271"}}}


id: MONDO:0011608
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inherited susceptibility or predisposition to developing atopic dermatitis that is associated with variation in the region 13q12-q14.","definition_xrefs":["DOID:0110101","PMID:11069631","MONDO:patterns/inherited_susceptibility"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"excluded_subClassOf","term_name":"atopic eczema","termid":"MONDO:0004980"},{"relation_name":"is_a","term_name":"dermatitis, atopic, susceptibility to","termid":"MONDO:0100178"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dermatitis, atopic, 5","secondary_identifiers":["MEDGEN:381292","UMLS:C1853900","MESH:C565280","OMIM:605844"],"synonyms":[{"name":"ATOD5","type":"exact"},{"name":"atopic dermatitis 5","type":"exact"},{"name":"atopic dermatitis type 5","type":"exact"},{"name":"dermatitis, ATOPIC, 5","type":"related"},{"name":"dermatitis, atopic, susceptibility to, 5","type":"exact"}],"termid":"MONDO:0011608","xrefs":{"Monarch":{"xref_id":"0011608"}}}


id: PBO:0054182
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1556","termid":"PBO:0054182"}


id: PBO:0036265
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acyl-coenzyme A thioesterase","termid":"PBO:0036265"}


id: GO:0019662
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Fermentation that does not include the anaerobic conversion of glucose to pyruvate via the glycolytic pathway.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fermentation","termid":"GO:0006113"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0008150","GO:0006091"],"is_obsolete":false,"name":"non-glycolytic fermentation","termid":"GO:0019662"}


id: MONDO:0004386
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An adenomyoma that arises from the uterine corpus and is characterized by the presence of marked glandular architectural complexity. It may recur following excision.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"atypical polypoid adenomyoma","termid":"MONDO:0003236"},{"relation_name":"is_a","term_name":"adenomyoma of uterine corpus","termid":"MONDO:0003237"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uterine corpus atypical polypoid adenomyoma","secondary_identifiers":["DOID:7878","MEDGEN:276937","NCIT:C40235","UMLS:C1519844"],"synonyms":[{"name":"atypical polypoid adenomyoma of body of uterus","type":"exact"},{"name":"body of uterus atypical polypoid adenomyoma","type":"exact"}],"termid":"MONDO:0004386","xrefs":{"Monarch":{"xref_id":"0004386"}}}


id: MONDO:0016027
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare genetic epilepsy syndrome characterized by the occurrence of afebrile seizures in otherwise healthy newborns with onset in the first few days of life.","definition_xrefs":["Orphanet:1949"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neonatal epilepsy syndrome","termid":"MONDO:0020070"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"benign neonatal seizures","secondary_identifiers":["SCTID:38281008","MEDGEN:65082","NCIT:C117307","MedDRA:10067866","OMIMPS:121200","SCTID:279953009","UMLS:C0220669","GARD:1519","DOID:14264","SCTID:230410004","DOID:14777"],"synonyms":[{"name":"BFNS","type":"exact"},{"name":"benign familal neonatal seizures","type":"exact"},{"name":"benign familial convulsion","type":"exact"},{"name":"benign familial convulsions","type":"exact"},{"name":"benign familial neonatal convulsions","type":"exact"},{"name":"benign familial neonatal epilepsy","type":"exact"},{"name":"benign familial neonatal seizures","type":"exact"},{"name":"benign neonatal convulsions","type":"exact"},{"name":"familial neonatal seizures","type":"exact"},{"name":"seizures, benign familial neonatal","type":"exact"}],"termid":"MONDO:0016027","xrefs":{"Monarch":{"xref_id":"0016027"}}}


id: MONDO:0032849
data:
  {"annotated_genes":["SJAG_03558"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87214],"is_not":false,"summary":null,"term":"MONDO:0032849"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03558":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with spastic quadriplegia, optic atrophy, seizures, and structural brain anomalies","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5231442","MEDGEN:1684884","DOID:0070539","OMIM:618651"],"synonyms":[{"name":"Halperin-Birk syndrome","type":"exact"},{"name":"NEDSOSB","type":"related"},{"name":"NEURODEVELOPMENTAL DISORDER WITH SPASTIC QUADRIPLEGIA, OPTIC ATROPHY, SEIZURES, AND STRUCTURAL BRAIN ANOMALIES","type":"related"}],"termid":"MONDO:0032849","terms_by_termid":{"MONDO:0032849":null},"xrefs":{"Monarch":{"xref_id":"0032849"}}}


id: PBO:0017920
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"R3H and G-patch domain Sqs1(predicted)","termid":"PBO:0017920"}


id: FYPO:0005924
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of the histone variant H2A.Z found associated with chromatin in centromere inner repeat regions is higher than normal when the cell is in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah","PMID:21437270"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein level in chromatin","termid":"FYPO:0005893"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0006551","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"increased H2A.Z level at centromere inner repeat","synonyms":[{"name":"H2A.Z accumulation at centromere inner repeat","type":"exact"},{"name":"increased H2A.Z level at centromere imr during vegetative growth","type":"exact"},{"name":"increased H2A.Z level at centromere inner repeat during mitotic cell cycle","type":"related"},{"name":"increased H2A.Z level at centromere inner repeat region during vegetative growth","type":"exact"},{"name":"increased H2A.Z level in chromatin at centromere inner repeat","type":"exact"}],"termid":"FYPO:0005924"}


id: GO:0047184
data:
  {"annotated_genes":["SJAG_04792"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[77209],"is_not":false,"summary":null,"term":"GO:0047184"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 1-acyl-sn-glycero-3-phosphocholine + acyl-CoA = phosphatidylcholine + CoA.","definition_xrefs":["EC:2.3.1.23","MetaCyc:2.3.1.23-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acyltransferase activity","termid":"GO:0008374"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04792":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016746"],"is_obsolete":false,"name":"1-acylglycerophosphocholine O-acyltransferase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["GO:0000507","Reactome:R-HSA-1482794","RHEA:12937"],"synonyms":[{"name":"1-acyl-sn-glycero-3-phosphocholine acyltransferase activity","type":"related"},{"name":"acyl coenzyme A-monoacylphosphatidylcholine acyltransferase activity","type":"related"},{"name":"acyl-CoA:1-acyl-glycero-3-phosphocholine transacylase activity","type":"related"},{"name":"acyl-CoA:1-acyl-sn-glycero-3-phosphocholine O-acyltransferase activity","type":"related"},{"name":"lysolecithin acyltransferase activity","type":"related"},{"name":"lysophosphatide acyltransferase activity","type":"related"},{"name":"lysophosphatidylcholine acyltransferase activity","type":"related"}],"termid":"GO:0047184","terms_by_termid":{"GO:0047184":null}}


id: PBO:0011964
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"simialr to S. pombe SPAC186.09","termid":"PBO:0011964"}


id: SO:0000168
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A specific nucleotide sequence of DNA at or near which a particular restriction enzyme cuts the DNA.","definition_xrefs":["SO:ma"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000168 restriction_enzyme_cut_site (obsolete SO:0000168)","termid":"SO:0000168"}


id: MONDO:1012260
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spinal dysraphism, non-human animal","termid":"MONDO:1011671"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spinal dysraphism, cattle","secondary_identifiers":["OMIA:000938-9913"],"termid":"MONDO:1012260","xrefs":{"Monarch":{"xref_id":"1012260"}}}


id: MONDO:0041366
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Acute form of epiglottitis.","definition_xrefs":["MONDO:patterns/acute"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acute laryngitis","termid":"MONDO:0004777"},{"relation_name":"is_a","term_name":"epiglottitis","termid":"MONDO:0005753"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acute epiglottitis","secondary_identifiers":["UMLS:C0155814","icd11.foundation:1070805666","SCTID:29608009","MEDGEN:510093"],"synonyms":[{"name":"acute epiglottitis","type":"exact"},{"name":"acute epiglottitis and supraglottitis","type":"related"},{"name":"epiglottitis, acute","type":"exact"}],"termid":"MONDO:0041366","xrefs":{"Monarch":{"xref_id":"0041366"}}}


id: MONDO:0002785
data:
  {"annotated_genes":["SJAG_03429"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87097],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009050"}]},"cv_name":"mondo","definition":"A benign or malignant neoplasm that affects the skull base.","definition_xrefs":["NCIT:C4676"],"direct_ancestors":[{"relation_name":"is_a","term_name":"skull neoplasm","termid":"MONDO:0024653"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03429":null},"genotype_count":0,"is_obsolete":false,"name":"skull base neoplasm","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:3842","MEDGEN:138208","UMLS:C0376527","MESH:D019292"],"synonyms":[{"name":"basicranium neoplasm","type":"exact"},{"name":"basicranium neoplasm (disease)","type":"exact"},{"name":"basicranium tumor","type":"exact"},{"name":"basicranium tumour","type":"exact"},{"name":"neoplasm of basicranium","type":"exact"},{"name":"neoplasm of skull base","type":"exact"},{"name":"neoplasm of the skull base","type":"exact"},{"name":"skull base cancer","type":"related"},{"name":"skull base neoplasm","type":"exact"},{"name":"skull base tumor","type":"exact"},{"name":"skull base tumour","type":"exact"},{"name":"tumor of basicranium","type":"exact"},{"name":"tumor of skull base","type":"exact"},{"name":"tumor of the skull base","type":"exact"},{"name":"tumors of skull base","type":"exact"},{"name":"tumour of basicranium","type":"exact"},{"name":"tumour of skull base","type":"exact"},{"name":"tumour of the skull base","type":"exact"},{"name":"tumours of skull base","type":"exact"}],"termid":"MONDO:0002785","terms_by_termid":{"MONDO:0009050":null},"xrefs":{"Monarch":{"xref_id":"0002785"}}}


id: PR:O94299
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC887.16 gene.","definition_xrefs":["UniProtKB:O94299","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C887.16 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC887.16","synonyms":[{"name":"Spom972h-SPBC887.16","type":"exact"}],"termid":"PR:O94299"}


id: PBO:0061048
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NIPA like domain containing 3","termid":"PBO:0061048"}


id: PBO:0043419
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carnosine dipeptidase 2","termid":"PBO:0043419"}


id: GO:0009536
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.","definition_xrefs":["GOC:jl","ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular membrane-bounded organelle","termid":"GO:0043231"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"plastid","secondary_identifiers":["Wikipedia:Plastid"],"termid":"GO:0009536"}


id: GO:0001673
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The nucleus of a male germ cell, a reproductive cell in males.","definition_xrefs":["GOC:hjd","CL:0000015","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"germ cell nucleus","termid":"GO:0043073"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005634","GO:0005575"],"is_obsolete":false,"name":"male germ cell nucleus","secondary_identifiers":["GO:0043081"],"synonyms":[{"name":"male germ-cell nucleus","type":"exact"}],"termid":"GO:0001673"}


id: PATO:0001596
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id: MONDO:0015967
data:
  {"annotated_genes":["SJAG_03247","SJAG_04495","SJAG_04334"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87632],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014674"},{"annotations":[85511,85512],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007453"},{"annotations":[86780,86779],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0100165"}]},"cv_name":"mondo","definition":"Diabetes mellitus that is caused by mutations in a single gene.","direct_ancestors":[{"relation_name":"is_a","term_name":"diabetes mellitus","termid":"MONDO:0005015"},{"relation_name":"is_a","term_name":"inborn errors of metabolism","termid":"MONDO:0019052"}],"gene_count":3,"genes_by_uniquename":{"SJAG_03247":null,"SJAG_04334":null,"SJAG_04495":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005015"},{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004335","MONDO:0005015"],"is_obsolete":false,"name":"monogenic diabetes","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["NCIT:C129739","Orphanet:183625","MEDGEN:1392102","UMLS:C3888631","EFO:1001511"],"synonyms":[{"name":"monogenic diabetes","type":"exact"},{"name":"rare genetic diabetes mellitus","type":"exact"}],"termid":"MONDO:0015967","terms_by_termid":{"MONDO:0007453":null,"MONDO:0014674":null,"MONDO:0100165":null},"xrefs":{"Monarch":{"xref_id":"0015967"}}}


id: PBO:0017702
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nicotinate phosphoribosyltransferase Npt1 (predicted)","termid":"PBO:0017702"}


id: PBO:0042964
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil-helix-coiled-coil-helix domain containing 4 pseudogene 2","termid":"PBO:0042964"}


id: PBO:0005648
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wtf element Wtf18","termid":"PBO:0005648"}


id: MONDO:0000948
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Dryness of the eye due to inadequate production of tears. Causes include vitamin A deficiency, Sjogren syndrome, rheumatoid arthritis, systemic lupus erythematosus, and scleroderma.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dry eye syndrome","termid":"MONDO:0006733"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"xerophthalmia","secondary_identifiers":["ICD9:375.15","DOID:10138","NCIT:C34503","UMLS:C0022575","MESH:D014985","SCTID:363677007","MEDGEN:9620"],"synonyms":[{"name":"conjunctival xerosis","type":"exact"}],"termid":"MONDO:0000948","xrefs":{"Monarch":{"xref_id":"0000948"}}}


id: PBO:0030565
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  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cellular_leucine_level","termid":"PBO:0030565"}


id: MONDO:0958301
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A round cell sarcoma with EWSR1-non-ETS fusion that is characterized by the presence of FUS-NFATC2 gene fusion.","definition_xrefs":["DOID:0081410"],"direct_ancestors":[{"relation_name":"is_a","term_name":"round cell sarcoma with EWSR1-non-ETS fusion","termid":"MONDO:0958160"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"round cell sarcoma with FUS-NFATC2 gene fusion","secondary_identifiers":["UMLS:C5555054","MEDGEN:1791495"],"termid":"MONDO:0958301","xrefs":{"Monarch":{"xref_id":"0958301"}}}


id: PBO:0058236
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4524b","termid":"PBO:0058236"}


id: GO:0046530
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The specialization of organization of a photoreceptor, a cell that responds to incident electromagnetic radiation, particularly visible light. An example of this process is found in Drosophila melanogaster.","definition_xrefs":["ISBN:0198506732","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron differentiation","termid":"GO:0030182"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"photoreceptor cell differentiation","secondary_identifiers":["GO:0007467"],"termid":"GO:0046530"}


id: MONDO:1011938
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  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"musculoskeletal system disorder, non-human animal","termid":"MONDO:1011335"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arthrogryposis and palatoschisis syndrome, non-human animal","secondary_identifiers":["OMIA:000070"],"termid":"MONDO:1011938","xrefs":{"Monarch":{"xref_id":"1011938"}}}


id: PBO:0017488
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-positively_regulates","termid":"PBO:0017488"}


id: PBO:0060019
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND4 pseudogene 7","termid":"PBO:0060019"}


id: GO:0051063
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  {"annotated_genes":["SJAG_00885","SJAG_04665"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[92805,107631],"is_not":false,"summary":null,"term":"GO:0051063"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: dCDP + thioredoxin disulfide + H2O = CDP + thioredoxin.","definition_xrefs":["MetaCyc:CDPREDUCT-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor","termid":"GO:0004748"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00885":null,"SJAG_04665":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"CDP reductase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"CDP reduction","type":"related"}],"termid":"GO:0051063","terms_by_termid":{"GO:0051063":null}}


id: PBO:0075957
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal transducing adaptor family member 1","termid":"PBO:0075957"}


id: RO:0002515
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  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"x is sequentially adjacent to y iff x and y do not overlap and if there are no base units intervening between x and y","direct_ancestors":[{"relation_name":"is_a","term_name":"does_not_overlap_sequence_of","termid":"RO:0002527"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sequentially_adjacent_to","termid":"RO:0002515"}


id: PBO:0058591
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6724-2","termid":"PBO:0058591"}


id: PBO:0050773
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydroxyacyl-thioester dehydratase type 2","termid":"PBO:0050773"}


id: PBO:0063678
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piggyBac transposable element derived 4 pseudogene 2","termid":"PBO:0063678"}


id: PBO:0047208
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 220 member B, pseudogene","termid":"PBO:0047208"}


id: PBO:0086102
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein required for actin organization and passage through Start; highly conserved nuclear protein; required for actin cytoskeleton organization; plays a critical role in G1 events; binds Nap1p; involved in 60S ribosome biogenesis","termid":"PBO:0086102"}


id: GO:1901592
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of double-strand break repair via break-induced replication.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of double-strand break repair via break-induced replication","termid":"GO:1901591"},{"relation_name":"is_a","term_name":"negative regulation of double-strand break repair via homologous recombination","termid":"GO:2000042"},{"relation_name":"negatively_regulates","term_name":"double-strand break repair via break-induced replication","termid":"GO:0000727"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006310"},{"rel_name":"negatively_regulates","termid":"GO:0006310"},{"rel_name":"regulates","termid":"GO:0006281"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"negatively_regulates","termid":"GO:0006281"},{"rel_name":"negatively_regulates","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006281","GO:0006259","GO:0006310","GO:0008150"],"is_obsolete":false,"name":"negative regulation of double-strand break repair via break-induced replication","synonyms":[{"name":"down regulation of double-strand break repair via break-induced replication","type":"exact"},{"name":"down-regulation of double-strand break repair via break-induced replication","type":"exact"},{"name":"downregulation of double-strand break repair via break-induced replication","type":"exact"},{"name":"inhibition of double-strand break repair via break-induced replication","type":"narrow"}],"termid":"GO:1901592"}


id: PBO:0044676
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DDHD domain containing 2","termid":"PBO:0044676"}


id: GO:0008272
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of sulfate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:krc"],"gene_count":0,"genotype_count":0,"name":"obsolete sulfate transport (obsolete GO:0008272)","synonyms":[{"name":"sulphate transport","type":"exact"}],"termid":"GO:0008272"}


id: GO:0002605
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of dendritic cell antigen processing and presentation.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of antigen processing and presentation","termid":"GO:0002578"},{"relation_name":"is_a","term_name":"regulation of dendritic cell antigen processing and presentation","termid":"GO:0002604"},{"relation_name":"negatively_regulates","term_name":"dendritic cell antigen processing and presentation","termid":"GO:0002468"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of dendritic cell antigen processing and presentation","synonyms":[{"name":"down regulation of dendritic cell antigen processing and presentation","type":"exact"},{"name":"down-regulation of dendritic cell antigen processing and presentation","type":"exact"},{"name":"downregulation of dendritic cell antigen processing and presentation","type":"exact"},{"name":"inhibition of dendritic cell antigen processing and presentation","type":"narrow"}],"termid":"GO:0002605"}


id: MONDO:0021420
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A non-neoplastic polypoid swelling of the vocal cord mucosa. It is usually unilateral and caused by excessive use of the voice.","definition_xrefs":["NCIT:C3440"],"direct_ancestors":[{"relation_name":"is_a","term_name":"laryngeal disorder","termid":"MONDO:0004382"},{"relation_name":"is_a","term_name":"polyp","termid":"MONDO:0005079"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polyp of vocal cord","secondary_identifiers":["EFO:0009478","MEDGEN:21887","icd11.foundation:1351291002","SCTID:9078005","UMLS:C0042929"],"synonyms":[{"name":"laryngeal vocal fold polyp","type":"exact"},{"name":"polyp of the vocal cord","type":"exact"},{"name":"vocal cord polyp","type":"exact"}],"termid":"MONDO:0021420","xrefs":{"Monarch":{"xref_id":"0021420"}}}


id: FYPO:0004917
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype observed in the vegetative growth phase of the life cycle in which positive regulation of a protein kinase activity occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah","PMID:11402029"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal regulation of catalytic activity","termid":"FYPO:0004916"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased positive regulation of protein kinase activity","synonyms":[{"name":"decreased activation of protein kinase activity","type":"narrow"},{"name":"decreased positive regulation of protein kinase activity during mitotic cell cycle","type":"related"},{"name":"decreased positive regulation of protein kinase activity during vegetative growth","type":"exact"},{"name":"reduced positive regulation of protein kinase activity","type":"exact"}],"termid":"FYPO:0004917"}


id: MONDO:0001858
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Idiopathic painful nonsuppurative swellings of one or more costal cartilages, especially of the second rib. The anterior chest pain may mimic that of coronary artery disease.","definition_xrefs":["MESH:D013991"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"arthropathy","termid":"MONDO:0006816"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Tietze syndrome","secondary_identifiers":["MEDGEN:52753","ICD9:733.6","SCTID:30128009","UMLS:C0040213","NCIT:C168333","DOID:14021"],"synonyms":[{"name":"Chondropathia tuberosa","type":"related"},{"name":"Costalchondritis","type":"exact"},{"name":"Costochondritis","type":"exact"},{"name":"Tietze syndrome","type":"exact"},{"name":"Tietze's disease","type":"exact"},{"name":"Tietze's syndrome","type":"exact"},{"name":"costochondral joint syndromic disease","type":"exact"},{"name":"costochondral junction syndrome","type":"exact"},{"name":"slipping rib syndrome","type":"exact"},{"name":"syndromic disease of costochondral joint","type":"exact"}],"termid":"MONDO:0001858","xrefs":{"Monarch":{"xref_id":"0001858"}}}


id: PBO:0001166
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spore wall assembly ADAM family peptidase Mde10","termid":"PBO:0001166"}


id: SO:0002058
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An exonic splicing regulatory element that functions to recruit trans acting splicing factors suppress the transcription of the gene or genes they control.","definition_xrefs":["SO:ke","PMID:23241926"],"direct_ancestors":[{"relation_name":"is_a","term_name":"silencer","termid":"SO:0000625"},{"relation_name":"is_a","term_name":"exon_region","termid":"SO:0000852"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exonic_splicing_silencer","synonyms":[{"name":"ESS","type":"exact"},{"name":"exonic splicing silencer","type":"exact"}],"termid":"SO:0002058"}


id: MONDO:0030993
data:
  {"annotated_genes":["SJAG_03542","SJAG_00336","SJAG_00303"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87189,87190,87191],"is_not":false,"summary":null,"term":"MONDO:0030993"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Tessadori-Van-Haaften neurodevelopmental syndrome","termid":"MONDO:0031400"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00303":null,"SJAG_00336":null,"SJAG_03542":null},"genotype_count":0,"is_obsolete":false,"name":"Tessadori-Van Haaften neurodevelopmental syndrome 3","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5774310","MEDGEN:1824083","OMIM:619950"],"synonyms":[{"name":"TEVANED3","type":"exact"},{"name":"Tessadori-Van Haaften neurodevelopmental syndrome 3","type":"exact"}],"termid":"MONDO:0030993","terms_by_termid":{"MONDO:0030993":null},"xrefs":{"Monarch":{"xref_id":"0030993"}}}


id: PBO:0050623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydroxysteroid dehydrogenase like 1","termid":"PBO:0050623"}


id: FYPO:0003202
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which actomyosin contractile ring contraction is not spatially and temporally coupled to division septum assembly as in wild type. The edges of the growing septum and the plasma membrane do not remain in contact, and septum assembly may be slower than ring contraction.","definition_xrefs":["PMID:24165938","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal septum assembly","termid":"FYPO:0000117"},{"relation_name":"is_a","term_name":"abnormal actomyosin contractile ring contraction","termid":"FYPO:0001364"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0004803","FYPO:0000032","FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"actomyosin contractile ring contraction uncoupled from septum assembly","synonyms":[{"name":"actomyosin contractile ring contraction uncoupled from septum assembly during mitotic cell cycle","type":"related"},{"name":"actomyosin contractile ring contraction uncoupled from septum assembly during vegetative growth","type":"exact"},{"name":"cytokinetic contractile ring contraction uncoupled from septum assembly","type":"exact"}],"termid":"FYPO:0003202"}


id: PBO:0061802
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"outer dense fiber of sperm tails 2 like","termid":"PBO:0061802"}


id: GO:0034263
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the accumulation of misfolded proteins in the endoplasmic reticulum triggers a response that positively regulates autophagy.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ER overload response","termid":"GO:0006983"},{"relation_name":"is_a","term_name":"positive regulation of autophagy","termid":"GO:0010508"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0006914"},{"rel_name":"positively_regulates","termid":"GO:0006914"}],"interesting_parent_ids":["GO:0023052","GO:0006914","GO:0008150"],"is_obsolete":false,"name":"positive regulation of autophagy in response to ER overload","synonyms":[{"name":"autophagy in response to ER stress","type":"exact"},{"name":"autophagy in response to endoplasmic reticulum overload","type":"exact"}],"termid":"GO:0034263"}


id: GO:0019809
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to spermidine, N-(3-aminopropyl)-1,4-diaminobutane.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyamine binding","termid":"GO:0019808"},{"relation_name":"is_a","term_name":"cation binding","termid":"GO:0043169"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"spermidine binding","termid":"GO:0019809"}


id: FYPO:0008003
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein at a site of mechanical stress on the cell surface is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mlr","PMID:34666001"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization","termid":"FYPO:0003627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"normal protein localization to site of mechanical stress","termid":"FYPO:0008003"}


id: GO:0010884
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of lipid storage. Lipid storage is the accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development.","definition_xrefs":["GOC:tb","GOC:BHF","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of lipid storage","termid":"GO:0010883"},{"relation_name":"is_a","term_name":"positive regulation of cellular process","termid":"GO:0048522"},{"relation_name":"is_a","term_name":"positive regulation of lipid localization","termid":"GO:1905954"},{"relation_name":"positively_regulates","term_name":"lipid storage","termid":"GO:0019915"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of lipid storage","synonyms":[{"name":"positive regulation of lipid sequestration","type":"narrow"}],"termid":"GO:0010884"}


id: PBO:0066248
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBMS3 antisense RNA 1","termid":"PBO:0066248"}


id: PBO:0013473
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trichostatin A delays mitotic entry in cdc25-22 mutant","termid":"PBO:0013473"}


id: MONDO:0800045
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autoinflammatory syndrome, familial, Behcet-like","termid":"MONDO:0031384"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autoinflammatory syndrome, familial, Behcet-like 1","secondary_identifiers":["Orphanet:674762","UMLS:C4225218","GARD:17848","DOID:0080944","MEDGEN:898541","OMIM:616744","Orphanet:476102"],"synonyms":[{"name":"AISBL","type":"broad"},{"name":"Behçet-like disease due to HA20","type":"exact"},{"name":"Behçet-like disease due to haploinsufficiency of A20","type":"exact"},{"name":"autoinflammatory syndrome, familial, Behcet-like","type":"broad"},{"name":"autoinflammatory syndrome, familial, Behcet-like 1","type":"exact"},{"name":"hereditary paediatric Behçet-like disease","type":"exact"},{"name":"hereditary pediatric Behçet-like disease","type":"exact"}],"termid":"MONDO:0800045","xrefs":{"Monarch":{"xref_id":"0800045"}}}


id: PBO:0041236
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 1 open reading frame 87","termid":"PBO:0041236"}


id: GO:0046417
data:
  {"annotated_genes":["SJAG_00224","SJAG_03485","SJAG_00337","SJAG_00518","SJAG_03580"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[101615,114474,91462,90200,94952],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009423"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving chorismate, the anion of (3R-trans)-3-((1-carboxyethenyl)oxy)-4-hydroxy-1,5-cyclohexadiene-1-carboxylic acid.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dicarboxylic acid metabolic process","termid":"GO:0043648"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00224":null,"SJAG_00337":null,"SJAG_00518":null,"SJAG_03485":null,"SJAG_03580":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"chorismate metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"chorismate metabolism","type":"exact"}],"termid":"GO:0046417","terms_by_termid":{"GO:0009423":null}}


id: FYPO:0005882
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of gamma-glutamyl-2-aminobutyrate (also called gamma-Glu-Abu) measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of substance in cell during vegetative growth","termid":"FYPO:0001330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"increased cellular gamma-glutamyl-2-aminobutyrate level","synonyms":[{"name":"increased cellular gamma-Glu-Abu level","type":"related"},{"name":"increased cellular gamma-Glu-Abu(1-) level","type":"exact"},{"name":"increased cellular gamma-glutamyl-2-aminobutyrate level during mitotic cell cycle","type":"related"},{"name":"increased cellular gamma-glutamyl-2-aminobutyrate level during vegetative growth","type":"exact"},{"name":"increased gamma-glutamyl-2-aminobutyrate accumulation","type":"related"}],"termid":"FYPO:0005882"}


id: PBO:0073725
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLAM family member 6 pseudogene 1","termid":"PBO:0073725"}


id: GO:0010549
data:
  {"annotated_genes":["SJAG_00840","SJAG_00680"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104029,94203],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905557"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of membrane disassembly.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular component organization","termid":"GO:0051128"},{"relation_name":"regulates","term_name":"membrane disassembly","termid":"GO:0030397"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00680":null,"SJAG_00840":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0008150","GO:0061024"],"is_obsolete":false,"name":"regulation of membrane disassembly","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0010549","terms_by_termid":{"GO:1905557":null}}


id: GO:1900535
data:
  {"annotated_genes":["SJAG_04972"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[98046],"is_not":false,"summary":null,"term":"GO:1900535"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of palmitic acid.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"long-chain fatty acid biosynthetic process","termid":"GO:0042759"},{"relation_name":"is_a","term_name":"palmitic acid metabolic process","termid":"GO:1900533"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04972":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006629","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"palmitic acid biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1900535","terms_by_termid":{"GO:1900535":null}}


id: MONDO:0016763
data:
  {"annotated_genes":["SJAG_00946","SJAG_00373","SJAG_04528","SJAG_01216","SJAG_04810"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86665],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013223"},{"annotations":[85574],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0100325"},{"annotations":[86906],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0018663"},{"annotations":[85522],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009593"},{"annotations":[86572],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012160"}]},"cv_name":"mondo","definition":"Spondylometaphyseal dysplasias are a heterogeneous group of disorders associated with walking and growth disturbances that become evident during the second year of life.","definition_xrefs":["Orphanet:254"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"Pyle disease","termid":"MONDO:0009943"},{"relation_name":"is_a","term_name":"skeletal dysplasia","termid":"MONDO:0018230"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00373":null,"SJAG_00946":null,"SJAG_01216":null,"SJAG_04528":null,"SJAG_04810":null},"genotype_count":0,"is_obsolete":false,"name":"spondylometaphyseal dysplasia","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["icd11.foundation:181781948","DOID:0112295","MEDGEN:1674850","UMLS:C4759767","OMIMPS:184255","GARD:18685"],"synonyms":[{"name":"spondylometaphyseal dysplasia","type":"exact"}],"termid":"MONDO:0016763","terms_by_termid":{"MONDO:0009593":null,"MONDO:0012160":null,"MONDO:0013223":null,"MONDO:0018663":null,"MONDO:0100325":null},"xrefs":{"Monarch":{"xref_id":"0016763"}}}


id: FYPO:0004300
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of an ATPase activity is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal catalytic activity","termid":"FYPO:0000660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000652","FYPO:0000654"],"is_obsolete":false,"name":"normal ATPase activity","termid":"FYPO:0004300"}


id: MOD:01822
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue sulfhydryl hydrogen with a Thermo Scientific cysTMT6plex-zero reporter+balance group.","definition_xrefs":["Unimod:984","URL:http://www.piercenet.com/files/2162220.pdf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cysTMT6plex reporter+balance reagent cysteine disulfide","termid":"MOD:01821"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"cysTMT6plex-zero reporter+balance reagent cysteine disulfide","synonyms":[{"name":"Native cysteine-reactive Tandem Mass Tag(TM)","type":"related"},{"name":"S-(2-{3-[2-(2,6-dimethylpiperidin-1-yl)acetamido]propanamido}ethyl)sulfanyl","type":"exact"},{"name":"cysTMT","type":"related"}],"termid":"MOD:01822"}


id: GO:0060787
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate or extent of the formation of the posterior neural plate, the posterior end of the flat, thickened layer of ectodermal cells known as the neural plate.","definition_xrefs":["GOC:tb","GOC:sdb_2009","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fibroblast growth factor receptor signaling pathway","termid":"GO:0008543"},{"relation_name":"is_a","term_name":"regulation of embryonic development","termid":"GO:0045995"},{"relation_name":"is_a","term_name":"positive regulation of morphogenesis of an epithelium","termid":"GO:1905332"},{"relation_name":"is_a","term_name":"regulation of animal organ morphogenesis","termid":"GO:2000027"},{"relation_name":"positively_regulates","term_name":"posterior neural plate formation","termid":"GO:0090018"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of posterior neural plate formation by fibroblast growth factor receptor signaling pathway","synonyms":[{"name":"positive regulation of posterior neural plate formation by FGF receptor signaling pathway","type":"related"},{"name":"positive regulation of posterior neural plate formation by fibroblast growth factor receptor signalling pathway","type":"exact"}],"termid":"GO:0060787"}


id: GO:0035365
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the directed movement of thymine, 5-methyluracil, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:bf","GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of nucleobase-containing compound transport","termid":"GO:0032239"},{"relation_name":"regulates","term_name":"thymine transport","termid":"GO:0035364"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"regulation of thymine transport","synonyms":[{"name":"regulation of 5-methyluracil transport","type":"exact"}],"termid":"GO:0035365"}


id: MONDO:0035404
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"serous or mucinous cystadenoma of childhood","termid":"MONDO:0016092"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mucinous cystadenoma of childhood","secondary_identifiers":["GARD:22257","UMLS:C4708594","MEDGEN:1642057","Orphanet:563671","ICD10CM:D27"],"synonyms":[{"name":"Mucinous cystadenoma of ovary in childhood","type":"exact"}],"termid":"MONDO:0035404","xrefs":{"Monarch":{"xref_id":"0035404"}}}


id: GO:0046422
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: violaxanthin + 2 ascorbate = zeaxanthin + 2 dehydroascorbate + 2 H2O; and antheraxanthin + ascorbate = zeaxanthin + dehydroascorbate + H2O.","definition_xrefs":["EC:1.23.5.1","ISBN:0471331309","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, reducing C-O-C group as acceptor","termid":"GO:0120546"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"violaxanthin de-epoxidase activity","secondary_identifiers":["RHEA:32371"],"synonyms":[{"name":"VDE","type":"related"},{"name":"violaxanthin:ascorbate oxidoreductase activity","type":"related"}],"termid":"GO:0046422"}


id: GO:0050804
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency or amplitude of synaptic transmission, the process of communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse. Amplitude, in this case, refers to the change in postsynaptic membrane potential due to a single instance of synaptic transmission.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of trans-synaptic signaling","termid":"GO:0099177"},{"relation_name":"regulates","term_name":"chemical synaptic transmission","termid":"GO:0007268"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"modulation of chemical synaptic transmission","synonyms":[{"name":"modulation of synaptic transmission","type":"broad"},{"name":"regulation of chemical synaptic transmission","type":"exact"},{"name":"regulation of synaptic transmission","type":"exact"}],"termid":"GO:0050804"}


id: PBO:0089717
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TOG/XMAP215 microtubule plus end tracking polymerase Dis1","termid":"PBO:0089717"}


id: PBO:0066359
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"REST corepressor 3","termid":"PBO:0066359"}


id: GO:0007355
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Specification of the anterior (head and thoracic segments) of the embryo by the gap genes; exemplified in insects by the actions of hunchback gene product.","definition_xrefs":["ISBN:0879694238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anterior/posterior pattern specification","termid":"GO:0009952"},{"relation_name":"part_of","term_name":"zygotic determination of anterior/posterior axis, embryo","termid":"GO:0007354"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anterior region determination","termid":"GO:0007355"}


id: PBO:0027771
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_error-prone_translesion_synthesis","termid":"PBO:0027771"}


id: FYPO:0003446
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of SRP-dependent cotranslational protein targeting to the ER membrane is decreased.","definition_xrefs":["GO:0006614","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal intracellular protein transport during vegetative growth","termid":"FYPO:0000215"},{"relation_name":"is_a","term_name":"abnormal protein secretion during vegetative growth","termid":"FYPO:0000536"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"decreased SRP-dependent cotranslational protein targeting to membrane during vegetative growth","synonyms":[{"name":"decreased SRP-dependent cotranslational protein targeting to membrane during mitotic cell cycle","type":"related"},{"name":"reduced SRP-dependent cotranslational protein targeting to membrane during vegetative growth","type":"exact"}],"termid":"FYPO:0003446"}


id: PBO:0064302
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polo like kinase 5 (inactive)","termid":"PBO:0064302"}


id: MONDO:0015906
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare disorder with hypergonadotropic hypogonadism (obsolete MONDO:0015906)","secondary_identifiers":["Orphanet:181441"],"synonyms":[{"name":"rare disorder with primary hypogonadism","type":"exact"}],"termid":"MONDO:0015906","xrefs":{"Monarch":{"xref_id":"0015906"}}}


id: PBO:0041124
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BTB domain containing 7","termid":"PBO:0041124"}


id: PBO:0081539
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 451","termid":"PBO:0081539"}


id: GO:0071388
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cortisone stimulus. Cortisone is a natural glucocorticoid steroid hormone that is metabolically convertible to cortisol. Cortisone is synthesized from cholesterol in the cortex of the adrenal gland under the stimulation of adrenocorticotropin hormone (ACTH). The main physiological effect of cortisone is on carbohydrate metabolism; it can stimulate increased glucose release from the liver, increased liver glycogen synthesis, and decreased utilization of glucose by the tissues.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to cortisone","termid":"GO:0051413"},{"relation_name":"is_a","term_name":"cellular response to glucocorticoid stimulus","termid":"GO:0071385"},{"relation_name":"is_a","term_name":"cellular response to alcohol","termid":"GO:0097306"},{"relation_name":"is_a","term_name":"cellular response to ketone","termid":"GO:1901655"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to cortisone stimulus","termid":"GO:0071388"}


id: GO:0036132
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 15-keto-prostaglandin + NAD(P)H + H+ -> 13,14-dihydro-15-keto-prostaglandin + NAD(P)+. This reaction is the reduction of 15-keto-prostaglandin.","definition_xrefs":["GOC:mw","PMID:17449869"],"gene_count":0,"genotype_count":0,"name":"obsolete 13-prostaglandin reductase activity (obsolete GO:0036132)","synonyms":[{"name":"15-oxoprostaglandin 13-reductase activity","type":"exact"}],"termid":"GO:0036132"}


id: PBO:0081789
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 717","termid":"PBO:0081789"}


id: FYPO:0004704
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells contain more cytoplasmic microtubules than normal during interphase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubules present in increased numbers","termid":"FYPO:0004538"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000054"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0002399","FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0000054"],"is_obsolete":false,"name":"interphase microtubules present in increased numbers","synonyms":[{"name":"cytoplasmic microtubules present in greater numbers","type":"exact"},{"name":"cytoplasmic microtubules present in increased numbers during mitotic interphase","type":"exact"},{"name":"increased level of interphase MTs","type":"exact"},{"name":"interphase cytoplasmic microtubules present in increased numbers","type":"exact"},{"name":"interphase microtubules present in increased numbers during mitotic cell cycle","type":"related"},{"name":"interphase microtubules present in increased numbers during vegetative growth","type":"exact"}],"termid":"FYPO:0004704"}


id: GO:0100061
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any transcription factor catabolic process process that negatively regulates SREBP signaling pathway.","definition_xrefs":["GOC:obol","GOC:cjm"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of SREBP signaling pathway by transcription factor catabolic process (obsolete GO:0100061)","termid":"GO:0100061"}


id: GO:0099006
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The entry of a symbiont into a host cell, following endocytosis, via permeabilization of the endosomal membrane by membrane penetration protein(s) of the symbiont. This process mediates the entry of some non-enveloped virus into eukaryotic cells. In some cases, viral membrane-penetration protein requires to be activated to display its membrane penetrating activity. Activation can be due to receptor binding or the acidic pH of the endosomal lumen.","definition_xrefs":["PMID:15329727","PMID:25055856"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont entry into host cell via permeabilization of host membrane","termid":"GO:0140267"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont entry into host cell via permeabilization of endosomal membrane","synonyms":[{"name":"viral entry via permeabilization of endosomal membrane","type":"narrow"}],"termid":"GO:0099006"}


id: GO:0015734
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of taurine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alkanesulfonate transmembrane transport","termid":"GO:0042918"},{"relation_name":"is_a","term_name":"nitrogen compound transport","termid":"GO:0071705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179","GO:0055085"],"is_obsolete":false,"name":"taurine transmembrane transport","synonyms":[{"name":"taurine transport","type":"broad"}],"termid":"GO:0015734"}


id: PBO:0002666
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stress activated MAP kinase interacting protein Sin1","termid":"PBO:0002666"}


id: MONDO:0008076
data:
  {"annotated_genes":["SJAG_00663"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86527],"is_not":false,"summary":null,"term":"MONDO:0008076"}]},"cv_name":"mondo","definition":"An autosomal dominant form of recurrent focal neuropathy characterized clinically by acute, recurrent episodes of brachial plexus neuropathy with muscle weakness and atrophy preceded by severe pain in the affected arm.","definition_xrefs":["OMIM:162100"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"neuralgic amyotrophy","termid":"MONDO:0017362"},{"relation_name":"is_a","term_name":"brachial plexus neuropathy","termid":"MONDO:0006683"},{"relation_name":"is_a","term_name":"hereditary peripheral neuropathy","termid":"MONDO:0020127"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00663":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244"],"is_obsolete":false,"name":"amyotrophic neuralgia","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:320318","DOID:10383","MESH:D020968","GARD:3955","UMLS:C1834304","SCTID:26609002","ICD9:353.5"],"synonyms":[{"name":"HNA","type":"related"},{"name":"amyotrophy, hereditary neuralgic","type":"exact"},{"name":"amyotrophy, hereditary neuralgic, with predilection for brachial plexus","type":"exact"},{"name":"brachial plexus neuropathy, hereditary","type":"exact"},{"name":"hereditary brachial plexus neuropathy","type":"exact"},{"name":"hereditary neuralgic amyotrophy","type":"exact"},{"name":"neuralgic amyotrophy","type":"related"},{"name":"neuritis with brachial predilection","type":"exact"}],"termid":"MONDO:0008076","terms_by_termid":{"MONDO:0008076":null},"xrefs":{"Monarch":{"xref_id":"0008076"}}}


id: PBO:0087307
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Small (67 amino acids) protein involved in sporulation; localizes to the prospore membrane; phosphorylated during meiosis; a longer, 5'-extended mRNA is also transcribed beginning in mid-meiosis, regulated by two MSEs (middle sporulation elements), and includes an uORF of 15 codons in its 5'-UTR; evidence transcription is regulated by Pdr1p","termid":"PBO:0087307"}


id: PBO:0030686
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_RNA_level_during_vegetative_growth","termid":"PBO:0030686"}


id: PBO:0042924
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chorionic gonadotropin subunit beta 2","termid":"PBO:0042924"}


id: MONDO:0014872
data:
  {"annotated_genes":["SJAG_03081"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86460],"is_not":false,"summary":null,"term":"MONDO:0014872"}]},"cv_name":"mondo","definition":"Any congenital stationary night blindness in which the cause of the disease is a mutation in the GNB3 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital stationary night blindness","termid":"MONDO:0016293"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03081":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"congenital stationary night blindness 1H","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:934725","GARD:16177","OMIM:617024","DOID:0110866","UMLS:C4310758"],"synonyms":[{"name":"CSNB1H","type":"exact"},{"name":"GNB3 congenital stationary night blindness","type":"exact"},{"name":"congenital stationary night blindness caused by mutation in GNB3","type":"exact"},{"name":"congenital stationary night blindness type 1H","type":"exact"},{"name":"night blindness, congenital stationary, type 1H","type":"exact"}],"termid":"MONDO:0014872","terms_by_termid":{"MONDO:0014872":null},"xrefs":{"Monarch":{"xref_id":"0014872"}}}


id: PBO:0111297
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase chadoprop types","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"biogrid_version","termid":"PBO:0111297"}


id: PBO:0016093
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome segregation protein Csi1","termid":"PBO:0016093"}


id: GO:1903961
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of anion transmembrane transport.","definition_xrefs":["GOC:TermGenie","GOC:vw","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of monoatomic ion transmembrane transport","termid":"GO:0034767"},{"relation_name":"is_a","term_name":"positive regulation of monoatomic anion transport","termid":"GO:1903793"},{"relation_name":"is_a","term_name":"regulation of monoatomic anion transmembrane transport","termid":"GO:1903959"},{"relation_name":"positively_regulates","term_name":"monoatomic anion transmembrane transport","termid":"GO:0098656"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"positive regulation of anion transmembrane transport","synonyms":[{"name":"activation of anion transmembrane transport","type":"narrow"},{"name":"up regulation of anion transmembrane transport","type":"exact"},{"name":"up-regulation of anion transmembrane transport","type":"exact"},{"name":"upregulation of anion transmembrane transport","type":"exact"}],"termid":"GO:1903961"}


id: PBO:0066025
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAN binding protein 6","termid":"PBO:0066025"}


id: PBO:0001615
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fatty acid synthase alpha subunit Lsd1","termid":"PBO:0001615"}


id: SO:0000297
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Displacement loop; a region within mitochondrial DNA in which a short stretch of RNA is paired with one strand of DNA, displacing the original partner DNA strand in this region; also used to describe the displacement of a region of one strand of duplex DNA by a single stranded invader in the reaction catalyzed by RecA protein.","direct_ancestors":[{"relation_name":"is_a","term_name":"biological_region","termid":"SO:0001411"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"D_loop","secondary_identifiers":["http://en.wikipedia.org/wiki/D_loop"],"synonyms":[{"name":"D-loop","type":"exact"},{"name":"INSDC_feature:D-loop","type":"exact"},{"name":"displacement loop","type":"related"}],"termid":"SO:0000297"}


id: PBO:0043920
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ciliary rootlet coiled-coil, rootletin","termid":"PBO:0043920"}


id: PBO:0071729
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L39 pseudogene 27","termid":"PBO:0071729"}


id: PBO:0054153
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1520","termid":"PBO:0054153"}


id: GO:1902910
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of melanosome transport.","definition_xrefs":["GO_REF:0000058","GOC:als","PMID:23334344","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular process","termid":"GO:0048522"},{"relation_name":"is_a","term_name":"positive regulation of transport","termid":"GO:0051050"},{"relation_name":"is_a","term_name":"regulation of melanosome transport","termid":"GO:1902908"},{"relation_name":"positively_regulates","term_name":"melanosome transport","termid":"GO:0032402"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of melanosome transport","synonyms":[{"name":"activation of melanosome transport","type":"narrow"},{"name":"up regulation of melanosome transport","type":"exact"},{"name":"up-regulation of melanosome transport","type":"exact"},{"name":"upregulation of melanosome transport","type":"exact"}],"termid":"GO:1902910"}


id: MONDO:0003005
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Accumulation of intraretinal fluid and protein in the macula, which may result in swelling and decreased central vision.","definition_xrefs":["NCIT:C35468"],"direct_ancestors":[{"relation_name":"is_a","term_name":"macular degeneration","termid":"MONDO:0003004"},{"relation_name":"is_a","term_name":"retinal edema","termid":"MONDO:0004037"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"macular retinal edema","secondary_identifiers":["MEDGEN:75732","UMLS:C0271051","DOID:4449","SCTID:37231002"],"synonyms":[{"name":"edema, macular","type":"related"},{"name":"macula lutea retinal edema","type":"exact"},{"name":"macula lutea retinal oedema","type":"exact"},{"name":"macular edema","type":"exact"},{"name":"macular oedema","type":"exact"},{"name":"retinal edema of macula lutea","type":"exact"},{"name":"retinal oedema of macula lutea","type":"exact"}],"termid":"MONDO:0003005","xrefs":{"Monarch":{"xref_id":"0003005"}}}


id: MONDO:0020003
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare surgical cardiac disease (obsolete MONDO:0020003)","secondary_identifiers":["Orphanet:97965"],"termid":"MONDO:0020003","xrefs":{"Monarch":{"xref_id":"0020003"}}}


id: PBO:0087603
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the CCR4-NOT1 core complex; this complex has multiple roles in the regulation of mRNA levels including regulation of transcription and destabilization of mRNA by deadenylation; basal transcription factor that increases initiation and elongation; activates the ATPase activity of Dhh1p, resulting in processing body disassembly","termid":"PBO:0087603"}


id: PBO:0053656
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 709","termid":"PBO:0053656"}


id: PBO:0076645
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T-box transcription factor 2","termid":"PBO:0076645"}


id: MONDO:0001654
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant neoplasm involving the spermatic cord.","direct_ancestors":[{"relation_name":"is_a","term_name":"male reproductive organ cancer","termid":"MONDO:0005836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"spermatic cord cancer","secondary_identifiers":["MEDGEN:102278","UMLS:C0153603","NCIT:C3559","DOID:13169","SCTID:363453008","ICD9:187.6"],"synonyms":[{"name":"cancer of spermatic cord","type":"exact"},{"name":"malignant neoplasm of spermatic cord","type":"exact"},{"name":"malignant neoplasm of the spermatic cord","type":"exact"},{"name":"malignant spermatic cord neoplasm","type":"exact"},{"name":"malignant spermatic cord tumor","type":"exact"},{"name":"malignant spermatic cord tumour","type":"exact"},{"name":"malignant tumor of spermatic cord","type":"exact"},{"name":"malignant tumor of the spermatic cord","type":"exact"},{"name":"malignant tumour of spermatic cord","type":"exact"},{"name":"malignant tumour of the spermatic cord","type":"exact"},{"name":"spermatic cord Ca","type":"exact"},{"name":"spermatic cord cancer","type":"exact"}],"termid":"MONDO:0001654","xrefs":{"Monarch":{"xref_id":"0001654"}}}


id: PBO:0073412
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SET pseudogene 16","termid":"PBO:0073412"}


id: FYPO:0001508
data:
  {"alleles_by_uniquename":{"SJAG_01050:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01050","name":"nur1delta","uniquename":"SJAG_01050:allele-1"},"SJAG_03892:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03892","name":"vps4delta","uniquename":"SJAG_03892:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[120012],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001132"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin is abolished.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to chromatin during vegetative growth","termid":"FYPO:0000452"},{"relation_name":"is_a","term_name":"abolished protein localization to chromatin","termid":"FYPO:0001678"},{"relation_name":"is_a","term_name":"abolished protein localization to chromosome during vegetative growth","termid":"FYPO:0002841"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01050":null,"SJAG_01745":null,"SJAG_03892":null},"genotype_count":1,"genotypes_by_uniquename":{"nur1delta__vps4delta":{"display_name":"nur1delta vps4delta","display_uniquename":"nur1delta__vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01050:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0000138","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_01050","SJAG_03892"],"name":"abolished protein localization to chromatin during vegetative growth","references_by_uniquename":{"PMID:32109380":null},"synonyms":[{"name":"abolished protein localisation to chromatin during vegetative growth","type":"exact"},{"name":"abolished protein localization to chromatin during mitotic cell cycle","type":"related"},{"name":"protein localization to chromatin during vegetative growth abolished","type":"exact"}],"termid":"FYPO:0001508","terms_by_termid":{"FYPO:0001132":null,"FYPO_EXT:0000001":null}}


id: FYPO:0003226
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the mitotic spindle begins later than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to mitotic spindle","termid":"FYPO:0002824"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000138","FYPO:0005447","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"delayed onset of protein localization to mitotic spindle","synonyms":[{"name":"delayed onset of protein localisation to mitotic spindle","type":"exact"},{"name":"delayed onset of protein localization to spindle during mitotic cell cycle","type":"related"},{"name":"delayed onset of protein mitotic spindle to mitotic spindle during vegetative growth","type":"exact"},{"name":"delayed protein localization to mitotic spindle","type":"exact"}],"termid":"FYPO:0003226"}


id: MONDO:0012695
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Meckel syndrome in which the cause of the disease is a mutation in the RPGRIP1L gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Meckel syndrome","termid":"MONDO:0018921"},{"relation_name":"is_a","term_name":"polydactyly-syndactyly-triphalangism","termid":"MONDO:0800066"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Meckel syndrome, type 5","secondary_identifiers":["DOID:0070119","OMIM:611561","MESH:C566915","UMLS:C1969052","GARD:15520","MEDGEN:409740"],"synonyms":[{"name":"MKS5","type":"exact"},{"name":"Meckel syndrome 5","type":"related"},{"name":"Meckel syndrome caused by mutation in RPGRIP1L","type":"exact"},{"name":"Meckel syndrome, type 5","type":"exact"},{"name":"Meckel-Gruber syndrome, type 5","type":"exact"},{"name":"RPGRIP1L Meckel syndrome","type":"exact"}],"termid":"MONDO:0012695","xrefs":{"Monarch":{"xref_id":"0012695"}}}


id: GO:0006971
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a hypotonic environment, i.e. an environment with a lower concentration of solutes than the organism or cell.","definition_xrefs":["GOC:jl","PMID:12598593"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to osmotic stress","termid":"GO:0006970"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hypotonic response","synonyms":[{"name":"hypo-osmotic response","type":"exact"}],"termid":"GO:0006971"}


id: FYPO:0002024
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a vegetative cell is inviable, is elongated, has no septum, and contains more than one nucleus.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable elongated multinucleate vegetative cell","termid":"FYPO:0001493"},{"relation_name":"is_a","term_name":"elongated multinucleate aseptate vegetative cell","termid":"FYPO:0002049"},{"relation_name":"is_a","term_name":"inviable elongated aseptate cell","termid":"FYPO:0002066"},{"relation_name":"is_a","term_name":"inviable multinucleate aseptate vegetative cell","termid":"FYPO:0004106"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0000002","FYPO:0000004","FYPO:0005447","FYPO:0000005","FYPO:0000032","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"inviable elongated multinucleate aseptate vegetative cell","synonyms":[{"name":"elongated multinucleate aseptate inviable vegetative cell","type":"exact"},{"name":"inviable elongated multinucleate aseptate cell during vegetative growth","type":"exact"},{"name":"inviable elongated multinucleate aseptate vegetative cell during mitotic cell cycle","type":"related"},{"name":"lethal; elongated multinucleate aseptate vegetative cell","type":"exact"},{"name":"septation initiation defective","type":"related"},{"name":"sid","type":"related"}],"termid":"FYPO:0002024"}


id: GO:0035515
data:
  {"annotated_genes":["SJAG_00892"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[103463],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990984"}]},"cv_name":"molecular_function","definition":"Catalysis of the removal of a methyl group from one or more nucleosides within a RNA molecule involving the oxidation (i.e. electron loss) of one or more atoms.","definition_xrefs":["PMID:16482161","PMID:18775698","PMID:12594517"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2-oxoglutarate-dependent dioxygenase activity","termid":"GO:0016706"},{"relation_name":"is_a","term_name":"demethylase activity","termid":"GO:0032451"},{"relation_name":"is_a","term_name":"catalytic activity, acting on RNA","termid":"GO:0140098"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00892":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824","GO:0140098"],"is_obsolete":false,"name":"oxidative RNA demethylase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-8857692"],"synonyms":[{"name":"2-oxoglutarate-dependent RNA demethylase","type":"exact"}],"termid":"GO:0035515","terms_by_termid":{"GO:1990984":null}}


id: GO:0009608
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a symbiont, an organism living with an organism of a different species in close physical association. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:hb","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to other organism","termid":"GO:0051707"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to symbiont","synonyms":[{"name":"response of host to symbiont","type":"related"}],"termid":"GO:0009608"}


id: PBO:0074262
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier organic anion transporter family member 4C1","termid":"PBO:0074262"}


id: MOD:00220
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-arginine residue to a 4-hydroxy-L-arginine.","definition_xrefs":["RESID:AA0215","PubMed:7650037","PubMed:10966817"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monohydroxylated residue","termid":"MOD:00425"},{"relation_name":"is_a","term_name":"hydroxylated arginine","termid":"MOD:00682"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4-hydroxy-L-arginine","synonyms":[{"name":"(2S,4Xi)-2-amino-5-[(diaminomethylidene)amino]-4-hydroxypentanoic acid","type":"exact"},{"name":"2-amino-5-(carbamimidamido)-4-hydroxypentanoic acid [tautomer]","type":"exact"},{"name":"2-amino-5-[(aminoiminomethyl)amino]-4-hydroxypentanoic acid [tautomer]","type":"exact"},{"name":"2-amino-5-guanidino-4-hydroxypentanoic acid","type":"exact"},{"name":"4-hydroxy-L-arginine","type":"exact"},{"name":"4-hydroxylated L-arginine","type":"exact"},{"name":"4HyArg","type":"exact"},{"name":"C(gamma)-hydroxyarginine","type":"exact"},{"name":"MOD_RES 4-hydroxyarginine","type":"exact"},{"name":"gamma-hydroxyarginine","type":"exact"}],"termid":"MOD:00220"}


id: GO:0006638
data:
  {"annotated_genes":["SJAG_03162","SJAG_02907","SJAG_02100","SJAG_02089","SJAG_03604","SJAG_02763","SJAG_03609","SJAG_02543","SJAG_01036","SJAG_04041","SJAG_02683","SJAG_02487"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[112445,114567],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046339"},{"annotations":[74789],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046461"},{"annotations":[90396,74931,77345,71675],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019432"},{"annotations":[92257,98825,117966,71918],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019433"},{"annotations":[94038,115174,92258,90476],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006642"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving neutral lipids, lipids only soluble in solvents of very low polarity.","definition_xrefs":["ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipid metabolic process","termid":"GO:0006629"}],"gene_count":12,"genes_by_uniquename":{"SJAG_01036":null,"SJAG_02089":null,"SJAG_02100":null,"SJAG_02487":null,"SJAG_02543":null,"SJAG_02683":null,"SJAG_02763":null,"SJAG_02907":null,"SJAG_03162":null,"SJAG_03604":null,"SJAG_03609":null,"SJAG_04041":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"neutral lipid metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"neutral lipid metabolism","type":"exact"}],"termid":"GO:0006638","terms_by_termid":{"GO:0006642":null,"GO:0019432":null,"GO:0019433":null,"GO:0046339":null,"GO:0046461":null}}


id: PATO:0001216
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001216 volume_unit (obsolete PATO:0001216)","termid":"PATO:0001216"}


id: PR:Q9USQ9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A proteasome subunit beta type-4 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02584","PANTHER:PTHR11599:SF5","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome subunit beta type-7 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC577.10","secondary_identifiers":["UniProtKB:Q9USQ9"],"synonyms":[{"name":"Spom972h-PSMB4","type":"exact"}],"termid":"PR:Q9USQ9"}


id: MOD:01083
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-serine residue to O-benzyl-L-serine.","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-serine residue","termid":"MOD:00916"},{"relation_name":"is_a","term_name":"benzyl (Bzl) and benzyl ester (OBzl) modified residue","termid":"MOD:01008"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"O-benzyl-L-serine","termid":"MOD:01083"}


id: GO:0102845
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 1-18:3-2-16:0-monogalactosyldiacylglycerol + O2 + a reduced electron acceptor = 1-18:3-2-16:1-monogalactosyldiacylglycerol + 2 H2O + an oxidized electron acceptor.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 1-18:3-2-16:0-monogalactosyldiacylglycerol desaturase activity (obsolete GO:0102845)","termid":"GO:0102845"}


id: GO:0032144
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A homodimeric protein complex that possesses 4-aminobutyrate transaminase activity.","definition_xrefs":["GOC:mah","PMID:15528998"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein-containing complex","termid":"GO:0140535"},{"relation_name":"is_a","term_name":"transferase complex","termid":"GO:1990234"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"4-aminobutyrate transaminase complex","synonyms":[{"name":"ABAT complex","type":"exact"},{"name":"GABA transaminase complex","type":"exact"},{"name":"GABA-T complex","type":"exact"}],"termid":"GO:0032144"}


id: GO:0010072
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The specification of the meristem which will give rise to all post-embryonic above-ground structures of the plant as well as the non-root below-ground structures, such as rhizomes and tubers.","definition_xrefs":["GOC:tb","GOC:tair_curators","GOC:ascb_2009","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"embryonic meristem initiation","termid":"GO:0090421"},{"relation_name":"part_of","term_name":"shoot system morphogenesis","termid":"GO:0010016"},{"relation_name":"part_of","term_name":"embryonic meristem development","termid":"GO:0048508"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"primary shoot apical meristem specification","synonyms":[{"name":"embryo shoot apical meristem specification","type":"exact"}],"termid":"GO:0010072"}


id: PATO:0001068
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001068 relative strain (obsolete PATO:0001068)","termid":"PATO:0001068"}


id: PBO:0013030
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U4/U6 x U5 tri-snRNP complex subunit Snu66","termid":"PBO:0013030"}


id: GO:0045629
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of T-helper 2 cell differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of type 2 immune response","termid":"GO:0002829"},{"relation_name":"is_a","term_name":"negative regulation of T-helper cell differentiation","termid":"GO:0045623"},{"relation_name":"is_a","term_name":"regulation of T-helper 2 cell differentiation","termid":"GO:0045628"},{"relation_name":"negatively_regulates","term_name":"T-helper 2 cell differentiation","termid":"GO:0045064"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"negative regulation of T-helper 2 cell differentiation","synonyms":[{"name":"down regulation of T-helper 2 cell differentiation","type":"exact"},{"name":"down-regulation of T-helper 2 cell differentiation","type":"exact"},{"name":"downregulation of T-helper 2 cell differentiation","type":"exact"},{"name":"inhibition of T-helper 2 cell differentiation","type":"narrow"},{"name":"negative regulation of T-helper 2 cell development","type":"related"}],"termid":"GO:0045629"}


id: GO:0018075
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The bromination of phenylalanine.","definition_xrefs":["RESID:AA0176","RESID:AA0174","RESID:AA0175"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-phenylalanine bromination (obsolete GO:0018075)","termid":"GO:0018075"}


id: MONDO:0021090
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An invasive breast carcinoma characterized by the presence of cytoplasmic neutral lipids in the vast majority of the malignant cells.","definition_xrefs":["NCIT:C40365"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipid-rich carcinoma","termid":"MONDO:0003570"},{"relation_name":"is_a","term_name":"bilateral breast carcinoma","termid":"MONDO:0003982"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"lipid-rich breast carcinoma","secondary_identifiers":["MEDGEN:274685","UMLS:C1517894","DOID:7076"],"synonyms":[{"name":"breast lipid-rich carcinoma","type":"exact"},{"name":"lipid secreting breast carcinoma","type":"related"},{"name":"lipid-rich breast carcinoma","type":"exact"}],"termid":"MONDO:0021090","xrefs":{"Monarch":{"xref_id":"0021090"}}}


id: GO:1902880
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of BMP signaling pathway involved in spinal cord association neuron specification.","definition_xrefs":["PMID:21730158","GO_REF:0000058","GOC:TermGenie","GOC:mr"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of BMP signaling pathway involved in spinal cord association neuron specification (obsolete GO:1902880)","synonyms":[{"name":"activation of BMP signaling pathway involved in spinal cord association neuron specification","type":"narrow"},{"name":"activation of BMP signalling pathway involved in spinal cord association neuron specification","type":"narrow"},{"name":"activation of bone morphogenetic protein signaling pathway involved in spinal cord association neuron specification","type":"narrow"},{"name":"activation of bone morphogenetic protein signalling pathway involved in spinal cord association neuron specification","type":"narrow"},{"name":"positive regulation of BMP signalling pathway involved in spinal cord association neuron specification","type":"exact"},{"name":"positive regulation of bone morphogenetic protein signaling pathway involved in spinal cord association neuron specification","type":"exact"},{"name":"positive regulation of bone morphogenetic protein signalling pathway involved in spinal cord association neuron specification","type":"exact"},{"name":"up regulation of BMP signaling pathway involved in spinal cord association neuron specification","type":"exact"},{"name":"up regulation of BMP signalling pathway involved in spinal cord association neuron specification","type":"exact"},{"name":"up regulation of bone morphogenetic protein signaling pathway involved in spinal cord association neuron specification","type":"exact"},{"name":"up regulation of bone morphogenetic protein signalling pathway involved in spinal cord association neuron specification","type":"exact"},{"name":"up-regulation of BMP signaling pathway involved in spinal cord association neuron specification","type":"exact"},{"name":"up-regulation of BMP signalling pathway involved in spinal cord association neuron specification","type":"exact"},{"name":"up-regulation of bone morphogenetic protein signaling pathway involved in spinal cord association neuron specification","type":"exact"},{"name":"up-regulation of bone morphogenetic protein signalling pathway involved in spinal cord association neuron specification","type":"exact"},{"name":"upregulation of BMP signaling pathway involved in spinal cord association neuron specification","type":"exact"},{"name":"upregulation of BMP signalling pathway involved in spinal cord association neuron specification","type":"exact"},{"name":"upregulation of bone morphogenetic protein signaling pathway involved in spinal cord association neuron specification","type":"exact"},{"name":"upregulation of bone morphogenetic protein signalling pathway involved in spinal cord association neuron specification","type":"exact"}],"termid":"GO:1902880"}


id: PBO:0071741
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L39 pseudogene 39","termid":"PBO:0071741"}


id: MONDO:1012308
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"self-mutilation syndrome, non-human animal","termid":"MONDO:1011634"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"self-mutilation syndrome, horse","secondary_identifiers":["OMIA:001161-9796"],"termid":"MONDO:1012308","xrefs":{"Monarch":{"xref_id":"1012308"}}}


id: PBO:0041954
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil and C2 domain containing 1B","termid":"PBO:0041954"}


id: GO:0015988
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The transport of protons across a membrane and against an electrochemical gradient, using energy from a source such as ATP hydrolysis, light, or electron transport.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proton transmembrane transport","termid":"GO:1902600"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"energy coupled proton transmembrane transport, against electrochemical gradient","termid":"GO:0015988"}


id: PBO:0061013
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nidogen 1","termid":"PBO:0061013"}


id: SO:0001859
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A promoter element with consensus sequence CCCCTC, bound by the PKA-responsive zinc finger transcription factor Rst2.","definition_xrefs":["PMID:11739717"],"direct_ancestors":[{"relation_name":"is_a","term_name":"promoter_element","termid":"SO:0001659"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STREP_motif","synonyms":[{"name":"STREP motif","type":"related"},{"name":"stress-starvation response element of Schizosaccharomyces pombe","type":"exact"}],"termid":"SO:0001859"}


id: GO:0060978
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Blood vessel formation in the heart when new vessels emerge from the proliferation of pre-existing blood vessels.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"angiogenesis","termid":"GO:0001525"},{"relation_name":"part_of","term_name":"coronary vasculature morphogenesis","termid":"GO:0060977"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"angiogenesis involved in coronary vascular morphogenesis","synonyms":[{"name":"angiogenesis involved in cardiac vascular morphogenesis","type":"exact"},{"name":"angiogenesis involved in heart vascular morphogenesis","type":"exact"},{"name":"coronary blood vessel angiogenesis","type":"exact"},{"name":"coronary vasculature angiogenesis","type":"exact"}],"termid":"GO:0060978"}


id: FYPO:0004333
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins, or of specific protein sites, occurs to a greater extent than normal during a cellular response to hydrogen peroxide.","definition_xrefs":["PMID:22139357","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein phosphorylation during cellular response to oxidative stress","termid":"FYPO:0003692"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0000002","FYPO:0002494","FYPO:0001985","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"increased protein phosphorylation during cellular response to hydrogen peroxide","synonyms":[{"name":"increased protein phosphorylation during cellular response to H2O2","type":"exact"},{"name":"increased protein phosphorylation during cellular response to hydrogen peroxide during mitotic cell cycle","type":"related"},{"name":"increased protein phosphorylation during cellular response to hydrogen peroxide during vegetative growth","type":"exact"}],"termid":"FYPO:0004333"}


id: MONDO:0011830
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Lissencephaly due to LIS1 mutation is a cerebral malformation with epilepsy characterized predominantly by posterior isolated lissencephaly with developmental delay, intellectual disability and epilepsy that usually evolves from West syndrome to Lennox-Gastaut syndrome. Additional features include muscular hypotonia, acquired microcephaly, failure to thrive and poor control of airways leading to aspiration pneumonia.","definition_xrefs":["Orphanet:95232"],"direct_ancestors":[{"relation_name":"is_a","term_name":"classic lissencephaly","termid":"MONDO:0015146"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"lissencephaly due to LIS1 mutation","secondary_identifiers":["DOID:0112237","MEDGEN:1657090","GARD:16838","OMIM:607432","UMLS:C4749301"],"synonyms":[{"name":"LIS1","type":"related"},{"name":"PAFAH1B1-related lissencephaly","type":"exact"},{"name":"lissencephaly 1","type":"related"},{"name":"lissencephaly sequence, isolated","type":"related"},{"name":"lissencephaly, classic","type":"related"},{"name":"subcortical band heterotopia","type":"related"},{"name":"subcortical laminar heterotopia","type":"related"}],"termid":"MONDO:0011830","xrefs":{"Monarch":{"xref_id":"0011830"}}}


id: FYPO:0005247
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which cell growth is increased relative to normal in a medium containing melibiose as the carbon source.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased vegetative cell population growth","termid":"FYPO:0004557"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000139","FYPO:0000003","FYPO:0005447","FYPO:0002058","FYPO:0002057"],"is_obsolete":false,"name":"increased cell population growth on melibiose carbon source","synonyms":[{"name":"increased growth on melibiose carbon source","type":"broad"},{"name":"increased vegetative cell growth on melibiose carbon source","type":"exact"}],"termid":"FYPO:0005247"}


id: GO:0040021
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The determination of sex and sexual phenotype in the germ line of a hermaphrodite.","definition_xrefs":["GOC:ems"],"direct_ancestors":[{"relation_name":"is_a","term_name":"germ-line sex determination","termid":"GO:0018992"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hermaphrodite germ-line sex determination","secondary_identifiers":["GO:0042005"],"termid":"GO:0040021"}


id: PBO:0053107
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LCK proto-oncogene, Src family tyrosine kinase","termid":"PBO:0053107"}


id: PomGeneEx:0000004
data:
  {"annotation_feature_type":"gene","cv_name":"PomGeneEx","definition":"A gene expression qualifier that indicates that an RNA or protein is present at the same level or produced at the same rate under one set of conditions or at one indicated time as otherwise.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gene expression qualifier","termid":"PomGeneEx:0000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unchanged","synonyms":[{"name":"gene expression unchanged","type":"exact"},{"name":"gene product level unchanged","type":"exact"}],"termid":"PomGeneEx:0000004"}


id: PBO:0085762
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein kinase of the PAK/Ste20 family, required for cell integrity; physically interacts with Cdc31p (centrin), which is a component of the spindle pole body; phosphorylates Cbk1p kinase after allosteric activation by Hym1p; part of the RAM network that regulates cellular polarity and morphogenesis","termid":"PBO:0085762"}


id: GO:0006116
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A metabolic process that results in the oxidation of reduced nicotinamide adenine dinucleotide, NADH, to the oxidized form, NAD+.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete NADH oxidation (obsolete GO:0006116)","synonyms":[{"name":"NAD (reduced) dehydrogenation","type":"exact"},{"name":"NAD (reduced) oxidation","type":"exact"},{"name":"NADH dehydrogenation","type":"exact"},{"name":"reduced NAD dehydrogenation","type":"exact"},{"name":"reduced NAD oxidation","type":"exact"},{"name":"reduced nicotinamide adenine dinucleotide dehydrogenation","type":"exact"},{"name":"reduced nicotinamide adenine dinucleotide oxidation","type":"exact"}],"termid":"GO:0006116"}


id: MONDO:0018828
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"pseudo-TORCH syndrome","termid":"MONDO:0009626"},{"relation_name":"is_a","term_name":"hereditary disorder of connective tissue","termid":"MONDO:0023603"},{"relation_name":"is_a","term_name":"type 1 interferonopathy of childhood","termid":"MONDO:0957408"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025"],"is_obsolete":false,"name":"pseudo-TORCH syndrome 2","secondary_identifiers":["MEDGEN:1373355","GARD:17875","OMIM:617397","Orphanet:481665","UMLS:C4479376"],"synonyms":[{"name":"PTORCH2","type":"related"},{"name":"USP18 deficiency","type":"related"},{"name":"pseudo-TORCH syndrome 2","type":"exact"}],"termid":"MONDO:0018828","xrefs":{"Monarch":{"xref_id":"0018828"}}}


id: GO:0062084
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of polysaccharides that make up the capsule, a protective structure surrounding some species of bacteria and fungi.","definition_xrefs":["PMID:21917918"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of polysaccharide biosynthetic process","termid":"GO:0032885"},{"relation_name":"is_a","term_name":"regulation of capsule organization","termid":"GO:1901913"},{"relation_name":"regulates","term_name":"capsule polysaccharide biosynthetic process","termid":"GO:0045227"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"regulation of capsule polysaccharide biosynthetic process","termid":"GO:0062084"}


id: GO:0048741
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the skeletal muscle fiber over time, from its formation to the mature structure. Muscle fibers are formed by the maturation of myotubes. They can be classed as slow, intermediate/fast or fast.","definition_xrefs":["GOC:dph","GOC:mtg_muscle","GOC:jid","GOC:ef","GOC:lm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myotube cell development","termid":"GO:0014904"},{"relation_name":"part_of","term_name":"skeletal muscle tissue development","termid":"GO:0007519"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"skeletal muscle fiber development","synonyms":[{"name":"skeletal muscle fibre development","type":"exact"},{"name":"skeletal myofiber development","type":"exact"},{"name":"skeletal myofibre development","type":"exact"}],"termid":"GO:0048741"}


id: MONDO:0003039
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Impaired ability to retrieve words; in particular, an inability to recall the names of objects and people.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aphasia","termid":"MONDO:0000598"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nominal aphasia","secondary_identifiers":["UMLS:C0003113","MEDGEN:312","MESH:D000849","DOID:4541"],"synonyms":[{"name":"anomia","type":"exact"},{"name":"anomic aphasia","type":"exact"},{"name":"anomic aphasia (finding)","type":"exact"}],"termid":"MONDO:0003039","xrefs":{"Monarch":{"xref_id":"0003039"}}}


id: GO:0098503
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process of removing a 3' phosphate group from a DNA molecule.","definition_xrefs":["GOC:DOS"],"gene_count":0,"genotype_count":0,"name":"obsolete DNA 3' dephosphorylation (obsolete GO:0098503)","termid":"GO:0098503"}


id: GO:0032279
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A type of synapse occurring between an axon and a dendritic spine or dendritic shaft. Asymmetric synapses, the most abundant synapse type in the central nervous system, involve axons that contain predominantly spherical vesicles and contain a thickened postsynaptic density. Most or all synapses of this type are excitatory.","definition_xrefs":["GOC:ef","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron to neuron synapse","termid":"GO:0098984"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"asymmetric synapse","synonyms":[{"name":"Gray's type I synapse","type":"exact"}],"termid":"GO:0032279"}


id: GO:0102149
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-[(2E,6E)-farnesyl]-L-cysteine + O2 + H2O = (2-trans,6-trans)-farnesal + L-cysteine + hydrogen peroxide.","definition_xrefs":["GOC:pz","EC:1.8.3.6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor","termid":"GO:0016670"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"farnesylcysteine lyase activity","secondary_identifiers":["RHEA:30231","MetaCyc:RXN-11623"],"termid":"GO:0102149"}


id: PBO:0066016
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAMP2 antisense RNA 1","termid":"PBO:0066016"}


id: PBO:0075138
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNRPA1 divergent transcript","termid":"PBO:0075138"}


id: PBO:0017739
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Wolff-Parkinson-White syndrome","termid":"PBO:0017739"}


id: PBO:0091756
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"II:g.2049892delT","termid":"PBO:0091756"}


id: PBO:0041137
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"betacellulin","termid":"PBO:0041137"}


id: GO:0000389
data:
  {"annotated_genes":["SJAG_00225","SJAG_01214"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73515,101608],"is_not":false,"summary":null,"term":"GO:0000389"}]},"cv_name":"biological_process","definition":"Recognition of the intron 3'-splice site by components of the assembling U2- or U12-type spliceosome.","definition_xrefs":["GOC:krc","ISBN:0879695897"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA splice site recognition","termid":"GO:0006376"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00225":null,"SJAG_01214":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0016071"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0010467","GO:0016071","GO:0008150","GO:0065003"],"is_obsolete":false,"name":"mRNA 3'-splice site recognition","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0000383","GO:0000382"],"synonyms":[{"name":"U12-type nuclear mRNA 3'-splice site recognition","type":"narrow"},{"name":"U2-type nuclear mRNA 3'-splice site recognition","type":"narrow"},{"name":"nuclear mRNA 3'-splice site recognition","type":"exact"}],"termid":"GO:0000389","terms_by_termid":{"GO:0000389":null}}


id: PBO:0070200
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 125 pseudogene","termid":"PBO:0070200"}


id: FYPO:0000353
data:
  {"alleles_by_uniquename":{"SJAG_00426:allele-1":{"allele_type":"amino_acid_mutation","description":"P363S","gene_uniquename":"SJAG_00426","name":"bbl1-P363S","uniquename":"SJAG_00426:allele-1"},"SJAG_01745:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01745","name":"lem2delta","uniquename":"SJAG_01745:allele-1"},"SJAG_01906:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01906","name":"nem1delta","uniquename":"SJAG_01906:allele-1"},"SJAG_02763:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02763","name":"ned1delta","uniquename":"SJAG_02763:allele-1"},"SJAG_02763:allele-2":{"allele_type":"amino_acid_mutation","description":"D422E,D424E","gene_uniquename":"SJAG_02763","name":"ned1cat","synonyms":[{"name":"Catalytic mutant","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-2"},"SJAG_02763:allele-4":{"allele_type":"amino_acid_mutation","description":"S235E; S651E","gene_uniquename":"SJAG_02763","name":"ned1S235E/S651E","synonyms":[{"name":"phosphomimetic","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-4"},"SJAG_02763:allele-5":{"allele_type":"amino_acid_mutation","description":"S499E; S538E; T620E; T638E; S651E","gene_uniquename":"SJAG_02763","name":"ned1-5E","uniquename":"SJAG_02763:allele-5"},"SJAG_03449:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03449","name":"man1delta","uniquename":"SJAG_03449:allele-1"},"SJAG_03449:allele-2":{"allele_type":"partial_amino_acid_deletion","description":"man1DHEH","gene_uniquename":"SJAG_03449","name":"Man1DHEH","uniquename":"SJAG_03449:allele-2"},"SJAG_03449:allele-3":{"allele_type":"amino_acid_insertion_and_deletion","description":"man1-1-488","gene_uniquename":"SJAG_03449","name":"man1-1-488","uniquename":"SJAG_03449:allele-3"},"SJAG_03940:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03940","name":"nem2delta","uniquename":"SJAG_03940:allele-1"},"SJAG_04464:allele-1":{"allele_type":"amino_acid_mutation","description":"R152C","gene_uniquename":"SJAG_04464","name":"pim1-R152C","synonyms":[{"name":"Inferred CDK-phospho-mimic mutation","reference":"PMID:28954740","type":"exact"}],"uniquename":"SJAG_04464:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[119616,119623,119621,119645],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0003779"},{"annotations":[119922],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0006433"},{"annotations":[119488,119486,119497,119485,119500],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001784"},{"annotations":[119483,119499,119484,119491,119496,119487],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001556"},{"annotations":[119652],"is_not":false,"rel_names":["is_a","has_part"],"summary":null,"term":"FYPO:0003976"}]},"cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the size, shape, or structure of all or part of the endomembrane system is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal endomembrane system","termid":"FYPO:0002404"},{"relation_name":"output_of","term_name":"abnormal endomembrane system organization","termid":"FYPO:0000804"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00426":null,"SJAG_01745":null,"SJAG_01906":null,"SJAG_02763":null,"SJAG_03449":null,"SJAG_03940":null,"SJAG_04464":null},"genotype_count":12,"genotypes_by_uniquename":{"Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type":{"display_name":"Man1DHEH(man1DHEH)","display_uniquename":"Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-2","expression":"Not assayed or wild type"}]}]},"bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"bbl1-P363S(aa)","display_uniquename":"bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00426:allele-1","expression":"Not assayed or wild type"}]}]},"lem2delta":{"display_name":"lem2delta","display_uniquename":"lem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01745:allele-1","expression":"Null"}]}]},"man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type":{"display_name":"man1-1-488(aa)","display_uniquename":"man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-3","expression":"Not assayed or wild type"}]}]},"man1delta":{"display_name":"man1delta","display_uniquename":"man1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-1","expression":"Null"}]}]},"ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"ned1-5E(S499E; S538E; T620E; T638E; S651E aa)","display_uniquename":"ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-5","expression":"Not assayed or wild type"}]}]},"ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"ned1S235E/S651E(S235E; S651E aa)","display_uniquename":"ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-4","expression":"Not assayed or wild type"}]}]},"ned1cat-D422E,D424E-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"ned1cat(D422E,D424E aa)","display_uniquename":"ned1cat-D422E,D424E-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-2","expression":"Not assayed or wild type"}]}]},"ned1delta":{"display_name":"ned1delta","display_uniquename":"ned1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02763:allele-1","expression":"Null"}]}]},"nem1delta":{"display_name":"nem1delta","display_uniquename":"nem1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01906:allele-1","expression":"Null"}]}]},"nem2delta":{"display_name":"nem2delta","display_uniquename":"nem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03940:allele-1","expression":"Null"}]}]},"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"pim1-R152C(aa)","display_uniquename":"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abnormal endomembrane system morphology","references_by_uniquename":{"PMID:21802294":null,"PMID:24184107":null,"PMID:25318672":null,"PMID:26774782":null,"PMID:28954740":null},"single_locus_annotated_genes":["SJAG_00426","SJAG_01745","SJAG_01906","SJAG_02763","SJAG_03940","SJAG_04464","SJAG_03449"],"single_locus_genotype_uniquenames":["ned1cat-D422E,D424E-amino_acid_mutation-expression-not_assayed_or_wild_type","bbl1-P363S-P363S-amino_acid_mutation-expression-not_assayed_or_wild_type","pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","lem2delta","man1delta","nem2delta","man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type","ned1S235E_S651E-S235E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","ned1-5E-S499E__S538E__T620E__T638E__S651E-amino_acid_mutation-expression-not_assayed_or_wild_type","Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","nem1delta","ned1delta"],"synonyms":[{"name":"abnormal endomembrane system morphology during mitotic cell cycle","type":"related"},{"name":"abnormal endomembrane system morphology during vegetative growth","type":"exact"},{"name":"endomembrane system morphology: abnormal","type":"related"}],"termid":"FYPO:0000353","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000162":null,"FYPO:0001556":null,"FYPO:0001784":null,"FYPO:0003779":null,"FYPO:0003976":null,"FYPO:0006433":null,"FYPO_EXT:0000001":null}}


id: PBO:0066397
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regenerating family member 1 alpha","termid":"PBO:0066397"}


id: PATO:0000960
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000960 absolute opacity (obsolete PATO:0000960)","termid":"PATO:0000960"}


id: PBO:0058408
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4777","termid":"PBO:0058408"}


id: GO:0061851
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"That part of the lamellipodium which represents the distal part of the structure.","definition_xrefs":["PMID:22339865"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell leading edge","termid":"GO:0031252"},{"relation_name":"part_of","term_name":"lamellipodium","termid":"GO:0030027"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"leading edge of lamellipodium","termid":"GO:0061851"}


id: GO:0075210
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a virus interferes with, inhibits or disrupts a cAMP-mediated signal transduction in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated suppression of host signal transduction pathway","termid":"GO:0052029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated suppression of host cAMP-mediated signal transduction","synonyms":[{"name":"disruption of host cAMP-mediated signal transduction","type":"exact"},{"name":"negative regulation by symbiont of host cAMP-mediated signal transduction","type":"narrow"},{"name":"negative regulation by symbiont of host cAMP-mediated signaling","type":"narrow"},{"name":"suppression by symbiont of host cAMP-mediated signal transduction","type":"narrow"}],"termid":"GO:0075210"}


id: PBO:0001571
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol-3-phosphatase, myotubularin family (predicted)","termid":"PBO:0001571"}


id: PBO:0016555
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spindle pole body WD repeat protein, human WDR8 family","termid":"PBO:0016555"}


id: GO:0047505
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (-)-menthol + H+ + NADPH + O2 = 1,4-menthane-3,8-diol + H2O + NADP+.","definition_xrefs":["EC:1.14.13.46","RHEA:11648"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"(-)-menthol monooxygenase activity","secondary_identifiers":["KEGG_REACTION:R02178","MetaCyc:--MENTHOL-MONOOXYGENASE-RXN"],"synonyms":[{"name":"(-)-menthol,NADPH:oxygen oxidoreductase (8-hydroxylating)","type":"related"},{"name":"l-menthol monooxygenase activity","type":"related"}],"termid":"GO:0047505"}


id: PBO:0073998
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 25 member 5","termid":"PBO:0073998"}


id: GO:0150043
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"The action of a molecule that contributes to the structural integrity of the extracellular matrix of the perisynaptic space (the extracellular space adjacent to the synapse) and the synaptic cleft.","definition_xrefs":["GOC:aruk","GOC:bc","PMID:17189701"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellular matrix structural constituent","termid":"GO:0005201"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005198"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005198","GO:0003674"],"is_obsolete":false,"name":"structural constituent of synapse-associated extracellular matrix","synonyms":[{"name":"extra-synaptic extracellular matrix structural constituent","type":"exact"},{"name":"structural constituent of extra-synaptic extracellular matrix","type":"exact"},{"name":"synapse-associated extracellular matrix structural constituent","type":"exact"}],"termid":"GO:0150043"}


id: MONDO:0012062
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any familial isolated dilated cardiomyopathy in which the cause of the disease is a mutation in the ABCC9 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial isolated dilated cardiomyopathy","termid":"MONDO:0700335"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"dilated cardiomyopathy 1O","secondary_identifiers":["MESH:C563906","GARD:15434","UMLS:C1837839","OMIM:608569","MEDGEN:325268","DOID:0110451"],"synonyms":[{"name":"ABCC9 familial isolated dilated cardiomyopathy","type":"exact"},{"name":"CMD1O","type":"exact"},{"name":"cardiomyopathy, dilated, 1O","type":"related"},{"name":"cardiomyopathy, dilated, type 1O","type":"exact"},{"name":"cardiomyopathy, dilated, with ventricular tachycardia","type":"related"},{"name":"dilated cardiomyopathy type 1O","type":"exact"},{"name":"dilated cardiomyopathy with ventricular tachycardia","type":"exact"},{"name":"familial isolated dilated cardiomyopathy caused by mutation in ABCC9","type":"exact"}],"termid":"MONDO:0012062","xrefs":{"Monarch":{"xref_id":"0012062"}}}


id: FYPO:0004612
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells form astral microtubules that are longer than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"long cytoplasmic microtubules","termid":"FYPO:0000233"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000054","FYPO:0002399","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"long astral microtubules","synonyms":[{"name":"elongated astral microtubules","type":"exact"},{"name":"long astral microtubules during mitotic cell cycle","type":"related"},{"name":"long astral microtubules during vegetative growth","type":"exact"},{"name":"long cytoplasmic astral microtubules","type":"exact"}],"termid":"FYPO:0004612"}


id: MONDO:0002345
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An acute or chronic inflammatory process that affects the cervix. Causes include sexually transmitted diseases and bacterial infections. Clinical manifestations include abnormal vaginal bleeding and vaginal discharge.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cervix disorder","termid":"MONDO:0002256"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cervicitis","secondary_identifiers":["MESH:D002575","HP:0030160","DOID:2568","icd11.foundation:1433247301","UMLS:C0007860","MEDGEN:3338","NCIT:C26716","SCTID:37610005","ICD9:616.0"],"synonyms":[{"name":"cervicitis","type":"exact"},{"name":"cervicitis (disease)","type":"exact"}],"termid":"MONDO:0002345","xrefs":{"Monarch":{"xref_id":"0002345"}}}


id: PBO:0042894
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement factor D","termid":"PBO:0042894"}


id: PBO:0069809
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1095, pseudogene","termid":"PBO:0069809"}


id: GO:0009270
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a humidity stimulus, moisture in the atmosphere.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to water","termid":"GO:0009415"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to humidity","termid":"GO:0009270"}


id: GO:1903006
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein K63-linked deubiquitination.","definition_xrefs":["GOC:TermGenie","GOC:bf","GOC:PARL","GO_REF:0000058","PMID:22970133"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein deubiquitination","termid":"GO:1903003"},{"relation_name":"is_a","term_name":"regulation of protein K63-linked deubiquitination","termid":"GO:1903004"},{"relation_name":"positively_regulates","term_name":"protein K63-linked deubiquitination","termid":"GO:0070536"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0070647"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0070647"}],"interesting_parent_ids":["GO:0070647","GO:0008150"],"is_obsolete":false,"name":"positive regulation of protein K63-linked deubiquitination","synonyms":[{"name":"activation of protein K63-linked deubiquitination","type":"narrow"},{"name":"up regulation of protein K63-linked deubiquitination","type":"exact"},{"name":"up-regulation of protein K63-linked deubiquitination","type":"exact"},{"name":"upregulation of protein K63-linked deubiquitination","type":"exact"}],"termid":"GO:1903006"}


id: PBO:0071666
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L37a pseudogene 7","termid":"PBO:0071666"}


id: MONDO:0017085
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete malformation of the neurenteric canal, spinal cord and column (obsolete MONDO:0017085)","secondary_identifiers":["Orphanet:268843"],"termid":"MONDO:0017085","xrefs":{"Monarch":{"xref_id":"0017085"}}}


id: PR:O36024
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- fta1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O36024"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinetochore protein fta1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4F10.12","synonyms":[{"name":"Spom972h-fta1","type":"exact"},{"name":"sim4 complex subunit fta1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"sim4-mal2-associated protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O36024"}


id: PBO:0079648
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme E2 S pseudogene 1","termid":"PBO:0079648"}


id: GO:1904516
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any apoptotic process in a myofibroblast cell.","definition_xrefs":["PMID:23026405","GO_REF:0000085","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"apoptotic process","termid":"GO:0006915"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"myofibroblast cell apoptotic process","synonyms":[{"name":"MFB apoptosis","type":"narrow"},{"name":"MFB apoptotic process","type":"exact"},{"name":"myofibroblast cell apoptosis","type":"narrow"}],"termid":"GO:1904516"}


id: PBO:0087645
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the GPI:protein transamidase complex; removes the GPI-anchoring signal and attaches GPI (glycosylphosphatidylinositol) to proteins in the ER; human homolog GPAA1 can complement growth defects of yeast thermosensitive mutant at restrictive temperature","termid":"PBO:0087645"}


id: MONDO:0020190
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete eyebrow/eyelashes distichiasis (obsolete MONDO:0020190)","secondary_identifiers":["Orphanet:98600"],"termid":"MONDO:0020190","xrefs":{"Monarch":{"xref_id":"0020190"}}}


id: MOD:00572
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative","definition_xrefs":["PubMed:15174056","Unimod:343","PubMed:15828771"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Unimod","termid":"MOD:00003"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oxidized arginine biotinylated with biotin hydrazide","synonyms":[{"name":"Argbiotinhydrazide","type":"related"},{"name":"oxidized Arginine biotinylated with biotin hydrazide","type":"related"}],"termid":"MOD:00572"}


id: GO:0019860
data:
  {"annotated_genes":["SJAG_04354"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92334],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006223"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving uracil, 2,4-dioxopyrimidine, one of the pyrimidine bases occurring in RNA, but not in DNA.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleobase metabolic process","termid":"GO:0006206"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04354":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"uracil metabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"uracil metabolism","type":"exact"}],"termid":"GO:0019860","terms_by_termid":{"GO:0006223":null}}


id: PBO:0002256
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TFIIH regulator Mms19","termid":"PBO:0002256"}


id: FYPO:0004984
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of chromatin binding by a gene product (usually a protein) at the central core of the centromeric regions is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased chromatin binding","termid":"FYPO:0002577"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000702"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000702","FYPO:0000652","FYPO:0001985"],"is_obsolete":false,"name":"decreased chromatin binding at centromere central core","synonyms":[{"name":"reduced chromatin binding at centromere central core","type":"exact"}],"termid":"FYPO:0004984"}


id: GO:1905773
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to 8-hydroxy-2'-deoxyguanosine an oxidized purine residue found in damaged DNA.","definition_xrefs":["GO_REF:0000067","GOC:nc","GOC:TermGenie","PMID:19734539","GOC:BHF","GOC:BHF_telomere"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidized purine DNA binding","termid":"GO:0032357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003677"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0003677"],"is_obsolete":false,"name":"8-hydroxy-2'-deoxyguanosine DNA binding","termid":"GO:1905773"}


id: MONDO:0003827
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A broad classification for humoral immunodeficiencies. These disorders may be caused by inadequate activation of progenitor B cells, defective class-switching or the effects of medications. Despite the potential for increased susceptibility to infection, these disorders are self-limited with eventual normalization of serum antibody levels.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic agammaglobulinemia","termid":"MONDO:0016463"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"transient hypogammaglobulinemia","secondary_identifiers":["MEDGEN:167815","NCIT:C27319","UMLS:C0859960","DOID:625"],"termid":"MONDO:0003827","xrefs":{"Monarch":{"xref_id":"0003827"}}}


id: MONDO:0008523
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Blau syndrome (BS) is a rare systemic inflammatory disease characterized by early onset granulomatous arthritis, uveitis and skin rash. BS now refers to both the familial and sporadic (formerly early-onset sarcoidosis) form of the same disease. The proposed term pediatric granulomatous arthritis is currently questioned since it fails to represent the systemic nature of the disease.","definition_xrefs":["Orphanet:90340"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"excluded_subClassOf","term_name":"autoimmune disease","termid":"MONDO:0007179"},{"relation_name":"excluded_subClassOf","term_name":"obsolete other genetic dermis disorder (obsolete MONDO:0018798)","termid":"MONDO:0018798"},{"relation_name":"excluded_subClassOf","term_name":"obsolete other dermis disorder (obsolete MONDO:0019295)","termid":"MONDO:0019295"},{"relation_name":"is_a","term_name":"autoimmune disease","termid":"MONDO:0007179"},{"relation_name":"is_a","term_name":"sarcoidosis","termid":"MONDO:0019338"},{"relation_name":"is_a","term_name":"hereditary disorder of connective tissue","termid":"MONDO:0023603"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"Blau syndrome","secondary_identifiers":["icd11.foundation:382488319","SCTID:699861000","MESH:C538157","OMIM:609464","NCIT:C116794","UMLS:C5201146","ICD9:714.89","GARD:304","MEDGEN:1684759","DOID:0050678","ICD9:692.9","NANDO:1200476","NANDO:2200434","OMIM:186580","MedDRA:10071755","Orphanet:90341"],"synonyms":[{"name":"ACUG","type":"related"},{"name":"BLAUS","type":"exact"},{"name":"Blau syndrome","type":"exact"},{"name":"EOS","type":"exact"},{"name":"Jabs syndrome","type":"exact"},{"name":"arthrocutaneouveal granulomatosis","type":"exact"},{"name":"early-onset sarcoidosis","type":"exact"},{"name":"granulomatosis, familial juvenile systemic","type":"exact"},{"name":"granulomatosis, familial, Blau type","type":"exact"},{"name":"granulomatous inflammatory arthritis, dermatitis, and uveitis, familial","type":"exact"},{"name":"paediatric granulomatous arthritis","type":"exact"},{"name":"pediatric granulomatous arthritis","type":"exact"},{"name":"sarcoidosis, early-onset","type":"exact"},{"name":"synovitis granulomatous with uveitis and cranial neuropathies","type":"related"},{"name":"synovitis, granulomatous, with uveitis and cranial neuropathies","type":"related"}],"termid":"MONDO:0008523","xrefs":{"Monarch":{"xref_id":"0008523"}}}


id: MONDO:0032771
data:
  {"annotated_genes":["SJAG_03163"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87533],"is_not":false,"summary":null,"term":"MONDO:0032771"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"paraganglioma","termid":"MONDO:0000448"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03163":null},"genotype_count":0,"is_obsolete":false,"name":"paragangliomas 7","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:16356","MEDGEN:1673088","OMIM:618475","UMLS:C5193116"],"synonyms":[{"name":"PARAGANGLIOMAS 7","type":"related"},{"name":"PGL7","type":"related"}],"termid":"MONDO:0032771","terms_by_termid":{"MONDO:0032771":null},"xrefs":{"Monarch":{"xref_id":"0032771"}}}


id: FYPO:0003806
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which a cell population does not grow in a medium containing one or more non-fermentable substance(s) as the only carbon source(s).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished vegetative cell population growth","termid":"FYPO:0001575"},{"relation_name":"is_a","term_name":"decreased cell population growth on non-fermentable carbon source","termid":"FYPO:0003805"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002060"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0002057","FYPO:0002058","FYPO:0005447","FYPO:0000139","FYPO:0002060","FYPO:0001985"],"is_obsolete":false,"name":"abolished cell population growth on non-fermentable carbon source","synonyms":[{"name":"abolished growth on non-fermentable carbon source","type":"broad"},{"name":"abolished non-fermentable carbon source utilization","type":"related"},{"name":"abolished vegetative cell population growth on non-fermentable carbon source","type":"exact"},{"name":"cell population growth on non-fermentable carbon source abolished","type":"exact"}],"termid":"FYPO:0003806"}


id: PBO:0049012
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycosylphosphatidylinositol specific phospholipase D1","termid":"PBO:0049012"}


id: MONDO:0009529
data:
  {"annotated_genes":["SJAG_03290"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85582],"is_not":false,"summary":null,"term":"MONDO:0009529"}]},"cv_name":"mondo","definition":"Pyruvate dehydrogenase E3 deficiency is a very rare subtype of pyruvate dehydrogenase deficiency (PDHD) characterized by either early-onset lactic acidosis and delayed development, later-onset neurological dysfunction or liver disease.","definition_xrefs":["Orphanet:2394"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"inborn mitochondrial myopathy","termid":"MONDO:0009637"},{"relation_name":"is_a","term_name":"maple syrup urine disease","termid":"MONDO:0009563"},{"relation_name":"is_a","term_name":"inherited lipoic acid biosynthesis defect","termid":"MONDO:0018424"},{"relation_name":"is_a","term_name":"pyruvate dehydrogenase deficiency","termid":"MONDO:0019169"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03290":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"},{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0002525"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004069","MONDO:0037792","MONDO:0004736","MONDO:0005244","MONDO:0002525"],"is_obsolete":false,"name":"pyruvate dehydrogenase E3 deficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:3263","MEDGEN:1805500","OMIM:246900","SCTID:29914000","UMLS:C5574660"],"synonyms":[{"name":"DLD deficiency","type":"exact"},{"name":"DLDD","type":"related"},{"name":"Dld deficiency","type":"related"},{"name":"E3 deficiency","type":"related"},{"name":"E3-deficient maple syrup urine disease","type":"exact"},{"name":"dihydrolipoamide dehydrogenase deficiency","type":"exact"},{"name":"lipoamide dehydrogenase deficiency, lactic acidosis due to","type":"related"},{"name":"maple syrup urine disease, type 3","type":"related"},{"name":"maple syrup urine disease, type III","type":"related"},{"name":"pyruvate dehydrogenase E3 deficiency","type":"exact"}],"termid":"MONDO:0009529","terms_by_termid":{"MONDO:0009529":null},"xrefs":{"Monarch":{"xref_id":"0009529"}}}


id: MONDO:0004311
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A carcinoma that involves the bulbo-urethral gland.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Littre gland carcinoma","termid":"MONDO:0003975"},{"relation_name":"is_a","term_name":"male reproductive organ cancer","termid":"MONDO:0005836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"carcinoma of Cowper glands","secondary_identifiers":["UMLS:C1516284","DOID:7632","MEDGEN:273091","NCIT:C39864"],"synonyms":[{"name":"Cowper gland carcinoma","type":"related"},{"name":"bulbo-urethral gland carcinoma","type":"exact"},{"name":"carcinoma of Cowper glands","type":"exact"},{"name":"carcinoma of bulbo-urethral gland","type":"exact"}],"termid":"MONDO:0004311","xrefs":{"Monarch":{"xref_id":"0004311"}}}


id: PBO:0027826
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_uracil_DNA_N-glycosylase_activity","termid":"PBO:0027826"}


id: GO:0072117
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process pertaining to the initial formation of the head kidney. The head kidney is a pronephros that consists of fused bilateral lobes located in the anterior part of the kidney.","definition_xrefs":["GOC:mtg_kidney_jan10","ZFA:0000669"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pronephros formation","termid":"GO:0072116"},{"relation_name":"part_of","term_name":"head kidney morphogenesis","termid":"GO:0072115"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"head kidney formation","termid":"GO:0072117"}


id: GO:0004182
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: peptidyl-L-amino acid + H2O = peptide + L-amino acid. Little or no action with -Asp, -Glu, -Arg, -Lys or -Pro.","definition_xrefs":["EC:3.4.17.1"],"gene_count":0,"genotype_count":0,"name":"obsolete carboxypeptidase A activity (obsolete GO:0004182)","synonyms":[{"name":"carboxypeptidase A activity","type":"exact"},{"name":"carboxypolypeptidase activity","type":"related"},{"name":"pancreatic carboxypeptidase A","type":"related"},{"name":"tissue carboxypeptidase A","type":"related"}],"termid":"GO:0004182"}


id: PBO:0029867
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H3-K56_acetylation_in_transcribed_regions","termid":"PBO:0029867"}


id: PBO:0013088
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"galactosylxylosylprotein 3-beta-galactosyltransferase Pvg1","termid":"PBO:0013088"}


id: MONDO:1010101
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Galactosemia that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disorder of orbital region, non-human animal","termid":"MONDO:1011315"},{"relation_name":"is_a","term_name":"disorder of visual system, non-human animal","termid":"MONDO:1011316"},{"relation_name":"is_a","term_name":"inborn errors of metabolism, non-human animal","termid":"MONDO:1012979"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"galactosemia, non-human animal","secondary_identifiers":["OMIA:001144"],"termid":"MONDO:1010101","xrefs":{"Monarch":{"xref_id":"1010101"}}}


id: GO:0002112
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an interleukin-33 receptor.","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor binding","termid":"GO:0005126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"interleukin-33 receptor binding","synonyms":[{"name":"IL-33","type":"narrow"},{"name":"interleukin-33 receptor ligand","type":"narrow"}],"termid":"GO:0002112"}


id: MONDO:0020490
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Mosaic trisomy 9 is a chromosomal abnormality that can affect may parts of the body. In people affected by this condition, some of the body's cells have three copies of chromosome 9 (trisomy), while other cells have the usual two copies of this chromosome. The signs and symptoms vary but may include mild to severe intellectual disability, developmental delay, growth problems (both before and after birth), congenital heart defects, and/or abnormalities of the craniofacial (skull and face) region. Most cases are not inherited; it often occurs sporadically as a random event during the formation of the reproductive cells (egg and sperm) or as the fertilized egg divides. Treatment is based on the signs and symptoms present in each person.","direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome 9 disorder","termid":"MONDO:0700016"},{"relation_name":"is_a","term_name":"trisomy","termid":"MONDO:0700065"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mosaic trisomy 9","secondary_identifiers":["MESH:C535454","SCTID:764989007","Orphanet:99776","UMLS:C2930908","MEDGEN:419661","NORD:966","GARD:43"],"synonyms":[{"name":"Mosaic trisomy chromosome 9","type":"related"},{"name":"Mosaic trisomy type 9","type":"exact"},{"name":"trisomy 9 mosaicism","type":"related"}],"termid":"MONDO:0020490","xrefs":{"Monarch":{"xref_id":"0020490"}}}


id: PBO:0004862
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit L13 (predicted)","termid":"PBO:0004862"}


id: GO:0071634
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of production of transforming growth factor-beta.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytokine production","termid":"GO:0001817"},{"relation_name":"regulates","term_name":"transforming growth factor beta production","termid":"GO:0071604"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of transforming growth factor beta production","secondary_identifiers":["GO:2001201"],"synonyms":[{"name":"regulation of TGF-B production","type":"exact"},{"name":"regulation of TGF-beta production","type":"exact"},{"name":"regulation of TGFB production","type":"exact"},{"name":"regulation of TGFbeta production","type":"exact"},{"name":"regulation of transforming growth factor-beta production","type":"exact"},{"name":"regulation of transforming growth factor-beta secretion","type":"narrow"}],"termid":"GO:0071634"}


id: PBO:0029510
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_microcolony,_stubby_septated_cells_(obsolete_FYPO:0002204)","termid":"PBO:0029510"}


id: GO:0006685
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of sphingomyelin, N-acyl-4-sphingenyl-1-O-phosphorylcholine.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sphingomyelin metabolic process","termid":"GO:0006684"},{"relation_name":"is_a","term_name":"phospholipid catabolic process","termid":"GO:0009395"},{"relation_name":"is_a","term_name":"sphingolipid catabolic process","termid":"GO:0030149"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"sphingomyelin catabolic process","synonyms":[{"name":"sphingomyelin breakdown","type":"exact"},{"name":"sphingomyelin catabolism","type":"exact"},{"name":"sphingomyelin degradation","type":"exact"}],"termid":"GO:0006685"}


id: GO:0048564
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a photosystem I complex on the thylakoid membrane.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"},{"relation_name":"part_of","term_name":"photosynthesis, light reaction","termid":"GO:0019684"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0065003","GO:0044085","GO:0006091","GO:0008150"],"is_obsolete":false,"name":"photosystem I assembly","secondary_identifiers":["GO:0010251"],"termid":"GO:0048564"}


id: PBO:0047457
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ficolin 1","termid":"PBO:0047457"}


id: PBO:0087880
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcriptional regulator of a variety of genes; phosphorylation by protein kinase A stimulates Opi1p function in negative regulation of phospholipid biosynthetic genes; involved in telomere maintenance; null exhibits disrupted mitochondrial metabolism and low cardiolipin content, strongly correlated with overproduction of inositol; binds to phosphatidic acid","termid":"PBO:0087880"}


id: GO:0033522
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H2A by addition of one or more ubiquitin groups.","definition_xrefs":["GOC:mah","GOC:bf","PMID:16473935","PMID:18430235","PMID:15509584"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H2A ubiquitination (obsolete GO:0033522)","termid":"GO:0033522"}


id: SO:0001166
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A non directional promoter motif with consensus sequence GAGAGCG.","definition_xrefs":["PMID:16827941"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA_motif","termid":"SO:0000713"},{"relation_name":"part_of","term_name":"RNApol_II_promoter","termid":"SO:0000170"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GAGA_motif","synonyms":[{"name":"GAGA","type":"exact"},{"name":"GAGA motif","type":"exact"},{"name":"NDM1","type":"exact"}],"termid":"SO:0001166"}


id: MONDO:0011168
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inherited susceptibility or predisposition to developing type 1 diabetes mellitus in which the cause of the disease is a mutation in the IL2RA gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene","MONDO:patterns/inherited_susceptibility"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"type 1 diabetes mellitus","termid":"MONDO:0005147"},{"relation_name":"is_a","term_name":"diabetes mellitus, insulin-dependent, X-linked, susceptibility to","termid":"MONDO:0010255"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"type 1 diabetes mellitus 10","secondary_identifiers":["MEDGEN:400903","UMLS:C1866040","OMIM:601942","DOID:0110749","MESH:C566602"],"synonyms":[{"name":"IDDM10","type":"exact"},{"name":"IL2RA type 1 diabetes mellitus","type":"exact"},{"name":"diabetes mellitus, insulin-dependent, 10","type":"related"},{"name":"diabetes mellitus, insulin-dependent, type 10","type":"exact"},{"name":"diabetes, mellitus, insulin-dependent, susceptibility to, 10","type":"related"},{"name":"insulin-dependent diabetes mellitus 10","type":"exact"},{"name":"type 1 diabetes mellitus caused by mutation in IL2RA","type":"exact"}],"termid":"MONDO:0011168","xrefs":{"Monarch":{"xref_id":"0011168"}}}


id: FYPO:0002775
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of sumoylated protein measured the cell is lower than normal when the cell is in the vegetative growth phase of the life cycle. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein level during vegetative growth","termid":"FYPO:0001324"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0006551"],"is_obsolete":false,"name":"decreased level of sumoylated protein in cell","synonyms":[{"name":"decreased accumulation of sumoylated protein in cell","type":"related"},{"name":"decreased level of sumoylated protein in cell during mitotic cell cycle","type":"related"},{"name":"decreased level of sumoylated protein in cell during vegetative growth","type":"exact"},{"name":"decreased sumoylated protein level during vegetative growth","type":"exact"},{"name":"reduced level of sumoylated protein in cell","type":"exact"}],"termid":"FYPO:0002775"}


id: PBO:0029611
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_tapered_cell","termid":"PBO:0029611"}


id: PBO:0059398
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein S31","termid":"PBO:0059398"}


id: FYPO:0003134
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of alpha-D-glucan measured in the cell wall is greater than normal during a cellular response to calcium starvation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased cell wall alpha-glucan level","termid":"FYPO:0001084"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002946"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0002946"],"is_obsolete":false,"name":"increased cell wall alpha-glucan level during cellular response to calcium starvation","synonyms":[{"name":"increased cell wall alpha-D-glucan level during cellular response to calcium starvation","type":"exact"},{"name":"increased cell wall alpha-glucan accumulation during cellular response to calcium starvation","type":"related"},{"name":"increased cell wall alpha-glucan level during cellular response to calcium starvation during mitotic cell cycle","type":"related"},{"name":"increased cell wall alpha-glucan level during cellular response to calcium starvation during vegetative growth","type":"exact"}],"termid":"FYPO:0003134"}


id: MONDO:0100545
data:
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