# terms

id: GO:0034345
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of type III interferon production. Interferon lambda is the only member of the type III interferon found so far.","definition_xrefs":["ISBN:0126896631","PMID:16734557","PMID:15546383","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokine production","termid":"GO:0001818"},{"relation_name":"is_a","term_name":"regulation of type III interferon production","termid":"GO:0034344"},{"relation_name":"negatively_regulates","term_name":"type III interferon production","termid":"GO:0034343"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of type III interferon production","synonyms":[{"name":"down regulation of type III interferon production","type":"exact"},{"name":"down-regulation of type III interferon production","type":"exact"},{"name":"downregulation of type III interferon production","type":"exact"},{"name":"inhibition of type III interferon production","type":"narrow"},{"name":"negative regulation of type III IFN production","type":"exact"}],"termid":"GO:0034345"}


id: GO:2000023
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of lateral root development.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of post-embryonic root development","termid":"GO:2000069"},{"relation_name":"regulates","term_name":"lateral root development","termid":"GO:0048527"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of lateral root development","termid":"GO:2000023"}


id: PBO:0053480
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 454","termid":"PBO:0053480"}


id: PBO:0065513
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"platelet activating factor receptor","termid":"PBO:0065513"}


id: MONDO:0012806
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"ectodermal dysplasia and immune deficiency","termid":"MONDO:0010293"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005093"],"is_obsolete":false,"name":"ectodermal dysplasia and immunodeficiency 2","secondary_identifiers":["GARD:15542","DOID:0081079","MESH:C567411","NCIT:C176826","MEDGEN:394295","OMIM:612132","UMLS:C2677481"],"synonyms":[{"name":"EPAID2","type":"exact"},{"name":"ectodermal dysplasia, anhidrotic, with T-cell immunodeficiency, autosomal dominant","type":"exact"}],"termid":"MONDO:0012806","xrefs":{"Monarch":{"xref_id":"0012806"}}}


id: PBO:0003966
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SAGA complex subunit Spt8","termid":"PBO:0003966"}


id: MONDO:1011808
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"cancer or benign tumor, non-human animal","termid":"MONDO:1011305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hodgkin disease, non-human animal","secondary_identifiers":["OMIA:000476"],"termid":"MONDO:1011808","xrefs":{"Monarch":{"xref_id":"1011808"}}}


id: PBO:0085695
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in resistance to desiccation stress; Stf2p exhibits antioxidant properties, and its overexpression prevents ROS accumulation and apoptosis; binds to F0 sector of mitochondrial F1F0 ATPase in vitro and may modulate the inhibitory action of Inh1p and Stf1p; protein abundance increases in response to DNA replication stress; STF2 has a paralog, TMA10, that arose from the whole genome duplication","termid":"PBO:0085695"}


id: PBO:0074761
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 120","termid":"PBO:0074761"}


id: GO:0060307
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the establishment or extent of a membrane potential in the polarizing direction towards the resting potential in a ventricular cardiomyocyte.","definition_xrefs":["GOC:mtg_cardiac_conduct_nov11","GOC:BHF","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cardiac muscle cell membrane repolarization","termid":"GO:0099623"},{"relation_name":"regulates","term_name":"ventricular cardiac muscle cell membrane repolarization","termid":"GO:0099625"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of ventricular cardiac muscle cell membrane repolarization","synonyms":[{"name":"electrocardiogram T wave","type":"related"},{"name":"regulation of ventricular cardiac muscle cell repolarization","type":"exact"},{"name":"regulation of ventricular cardiac muscle repolarization","type":"related"},{"name":"regulation of ventricular cardiomyocyte membrane repolarization","type":"exact"},{"name":"ventricular repolarization","type":"related"}],"termid":"GO:0060307"}


id: PR:C6Y4B8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC22F3.15 gene.","definition_xrefs":["UniProtKB:C6Y4B8","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C22F3.15 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22F3.15","synonyms":[{"name":"Spom972h-SPAC22F3.15","type":"exact"}],"termid":"PR:C6Y4B8"}


id: PR:P36605
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A histidinol-phosphate aminotransferase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02885","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histidinol-phosphate aminotransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC11B10.02c","secondary_identifiers":["UniProtKB:P36605"],"synonyms":[{"name":"Spom972h-hisC","type":"exact"},{"name":"imidazole acetol-phosphate transaminase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P36605"}


id: GO:0018281
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The formation of a C-terminal peptidyl-serine ethanolamide-linked glycosylsphingolipidinositol (GSI) anchor following hydrolysis of a seryl-peptide bond in the carboxy-terminal region of a membrane-associated protein.","definition_xrefs":["RESID:AA0166"],"gene_count":0,"genotype_count":0,"name":"obsolete GSI anchor biosynthetic process via N-seryl-glycosylsphingolipidinositolethanolamine (obsolete GO:0018281)","synonyms":[{"name":"GSI anchor anabolism via N-seryl-glycosylsphingolipidinositolethanolamine","type":"exact"},{"name":"GSI anchor formation via N-seryl-glycosylsphingolipidinositolethanolamine","type":"exact"},{"name":"GSI anchor synthesis via N-seryl-glycosylsphingolipidinositolethanolamine","type":"exact"}],"termid":"GO:0018281"}


id: PBO:0038506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP binding cassette subfamily D member 1 pseudogene 1","termid":"PBO:0038506"}


id: PBO:0058644
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6773","termid":"PBO:0058644"}


id: PBO:0041984
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 28A","termid":"PBO:0041984"}


id: GO:0106107
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of (R)-mevalonic acid biosynthetic process.","definition_xrefs":["GOC:BHF","PMID:24296663","GOC:rph","GOC:BHF_miRNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of biosynthetic process","termid":"GO:0009889"},{"relation_name":"is_a","term_name":"regulation of small molecule metabolic process","termid":"GO:0062012"},{"relation_name":"regulates","term_name":"(R)-mevalonic acid biosynthetic process","termid":"GO:1901737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"regulation of (R)-mevalonic acid biosynthetic process","termid":"GO:0106107"}


id: PBO:0075465
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spermatogenesis associated 17","termid":"PBO:0075465"}


id: GO:0047702
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: (3S)-3,6-diaminohexanoate = (3S,5S)-3,5-diaminohexanoate.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete beta-lysine 5,6-aminomutase activity (obsolete GO:0047702)","synonyms":[{"name":"b-lysine 5,6-aminomutase activity","type":"exact"}],"termid":"GO:0047702"}


id: GO:0036245
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a menadione stimulus. Menadione (also called vitamin K3) is a naphthoquinone having a methyl substituent at the 2-position.","definition_xrefs":["GOC:al","Wikipedia:Menadione"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to vitamin K","termid":"GO:0071307"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to menadione","synonyms":[{"name":"cellular response to vitamin K3","type":"exact"}],"termid":"GO:0036245"}


id: GO:0033935
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of (1->4)-beta-D-glucosidic links in oligoxyloglucans so as to remove successive isoprimeverose (i.e. alpha-xylo-1,6-beta-D-glucosyl-) residues from the non-reducing chain ends.","definition_xrefs":["EC:3.2.1.120"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta-glucosidase activity","termid":"GO:0008422"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016798"}],"interesting_parent_ids":["GO:0016798","GO:0003824","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"oligoxyloglucan beta-glycosidase activity","secondary_identifiers":["MetaCyc:3.2.1.120-RXN"],"synonyms":[{"name":"isoprimeverose-producing oligoxyloglucan hydrolase activity","type":"related"},{"name":"oligoxyloglucan hydrolase activity","type":"related"},{"name":"oligoxyloglucan xyloglucohydrolase activity","type":"related"}],"termid":"GO:0033935"}


id: PBO:0066910
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 211","termid":"PBO:0066910"}


id: GO:0030431
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which an organism enters and maintains a periodic, readily reversible state of reduced awareness and metabolic activity. Usually accompanied by physical relaxation, the onset of sleep in humans and other mammals is marked by a change in the electrical activity of the brain.","definition_xrefs":["ISBN:0192800981"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal process","termid":"GO:0032501"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sleep","secondary_identifiers":["Wikipedia:Sleep"],"synonyms":[{"name":"diapause","type":"related"},{"name":"dormancy","type":"related"},{"name":"lethargus","type":"related"}],"termid":"GO:0030431"}


id: MONDO:0022819
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete congenital arteriovenous shunt (obsolete MONDO:0022819)","termid":"MONDO:0022819","xrefs":{"Monarch":{"xref_id":"0022819"}}}


id: MONDO:0018626
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A condition resembling typhoid fever that is caused by infection by Salmonella enterica serovar Parathyphi.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"salmonellosis","termid":"MONDO:0000827"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paratyphoid fever","secondary_identifiers":["ICD9:002.2","Orphanet:443227","ICD9:002.3","ICD9:002.9","NCIT:C34897","SCTID:51254007","MEDGEN:18303","UMLS:C0030528","EFO:0007420","MESH:D010284","GARD:21855","DOID:3055","icd11.foundation:1780040028","ICD9:002.1"],"synonyms":[{"name":"paratyphoid","type":"related"},{"name":"paratyphoid A fever","type":"related"},{"name":"paratyphoid B fever","type":"related"},{"name":"paratyphoid C fever","type":"related"},{"name":"paratyphoid a","type":"related"},{"name":"paratyphoid b","type":"related"},{"name":"paratyphoid c","type":"related"},{"name":"paratyphoid fever A","type":"related"},{"name":"paratyphoid fever B","type":"related"},{"name":"paratyphoid fever C","type":"related"}],"termid":"MONDO:0018626","xrefs":{"Monarch":{"xref_id":"0018626"}}}


id: PBO:0043227
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chloride channel CLIC like 1","termid":"PBO:0043227"}


id: MONDO:0008227
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"acromelic dysplasia","termid":"MONDO:0019695"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peripheral dysostosis","secondary_identifiers":["UMLS:C4721502","OMIM:170700","GARD:2015","Orphanet:1795","MEDGEN:1648357"],"synonyms":[{"name":"dysostosis peripheral","type":"related"},{"name":"peripheral dysostosis","type":"exact"}],"termid":"MONDO:0008227","xrefs":{"Monarch":{"xref_id":"0008227"}}}


id: PBO:0047288
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FANK1 antisense RNA 1","termid":"PBO:0047288"}


id: PBO:0088610
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pumilio family RNA-binding protein Puf3","termid":"PBO:0088610"}


id: PBO:0043018
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CHL1 antisense RNA 2","termid":"PBO:0043018"}


id: PBO:0055740
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LIM homeobox transcription factor 1 alpha","termid":"PBO:0055740"}


id: FYPO:0000949
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which a cell does not contain a septum.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular physical quality phenotype during vegetative growth","termid":"FYPO:0004639"},{"relation_name":"output_of","term_name":"abolished septum assembly","termid":"FYPO:0000272"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0005447","FYPO:0000032","FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"aseptate","synonyms":[{"name":"absent septum","type":"exact"},{"name":"aseptate during mitotic cell cycle","type":"related"},{"name":"aseptate during vegetative growth","type":"exact"}],"termid":"FYPO:0000949"}


id: MONDO:0008891
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A progressive motor neuron disorder characterized by respiratory insufficiency, sensorineural deafness and progressive ponto-bulbar palsy.","definition_xrefs":["Orphanet:97229"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete bulbospinal muscular atrophy of childhood (obsolete MONDO:0016114)","termid":"MONDO:0016114"},{"relation_name":"excluded_subClassOf","term_name":"obsolete syndromic genetic hearing loss (obsolete MONDO:0019589)","termid":"MONDO:0019589"},{"relation_name":"is_a","term_name":"hereditary motor neuron disease","termid":"MONDO:0024257"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"riboflavin transporter deficiency","secondary_identifiers":["OMIMPS:211530","SCTID:699866005","UMLS:C4551777","MEDGEN:1634394","MESH:C537111","DOID:0050694","GARD:9993"],"synonyms":[{"name":"BVVLS","type":"related"},{"name":"BVVLS1","type":"related"},{"name":"Brown-Vialetto-Van Laere syndrome 1","type":"narrow"},{"name":"Brown-Vialetto-van Laere syndrome","type":"exact"},{"name":"Fazio-Londe syndrome","type":"exact"},{"name":"disorder of riboflavin transmembrane transporter activity","type":"exact"},{"name":"pontobulbar palsy and neurosensory deafness","type":"related"},{"name":"progressive bulbar palsy with sensorineural deafness","type":"related"},{"name":"riboflavin transmembrane transporter activity disease","type":"exact"},{"name":"sensorineural hearing loss-pontobulbar palsy syndrome","type":"exact"}],"termid":"MONDO:0008891","xrefs":{"Monarch":{"xref_id":"0008891"}}}


id: MONDO:0012802
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Oculoauricular syndrome, Schorderet type is a rare, genetic developmental defect during embryogenesis characterized by various ophthalmic anomalies (including congenital microphthalmia, microcornea, cataract, anterior segment dysgenesis, ocular coloboma and early onset rod-cone dystrophy), and abnormal external ears (low-set pinna with crumpled helix, narrow intertragic incisure, abnormal bridge connecting the crus of the helix and the anthelix, narrow external acoustic meatus, and lobule aplasia).","definition_xrefs":["Orphanet:157962"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic microphthalmia","termid":"MONDO:0016073"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"oculoauricular syndrome","secondary_identifiers":["MESH:C567416","DOID:0060482","UMLS:C2677500","OMIM:612109","GARD:16988","MEDGEN:393758"],"synonyms":[{"name":"OCACS","type":"related"},{"name":"Schorderet-Munier-Franceschetti syndrome","type":"related"},{"name":"microphthalmia, microcornea, anterior segment dysgenesis, cataract, ocular coloboma, retinal pigment epithelium abnormalities, Rod-cone dystrophy, and anomalies of the external Ear","type":"related"},{"name":"oculoauricular syndrome","type":"exact"},{"name":"oculoauricular syndrome, Schorderet type","type":"related"}],"termid":"MONDO:0012802","xrefs":{"Monarch":{"xref_id":"0012802"}}}


id: PBO:0051048
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy diversity 1/OR15-1A (non-functional)","termid":"PBO:0051048"}


id: PBO:0003821
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial inner membrane protein involved in respiratory chain complex IV assembly Coa1 (predicted)","termid":"PBO:0003821"}


id: PR:Q9UUH2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- bmt2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UUH2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"25S rRNA adenine-N(1) methyltransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC630.10","synonyms":[{"name":"Spom972h-bmt2","type":"exact"}],"termid":"PR:Q9UUH2"}


id: GO:0006148
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of inosine, hypoxanthine riboside, a nucleoside found free but not in combination in nucleic acids except in the anticodons of some tRNAs.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inosine metabolic process","termid":"GO:0046102"},{"relation_name":"is_a","term_name":"purine ribonucleoside catabolic process","termid":"GO:0046130"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"inosine catabolic process","synonyms":[{"name":"inosine breakdown","type":"exact"},{"name":"inosine catabolism","type":"exact"},{"name":"inosine degradation","type":"exact"}],"termid":"GO:0006148"}


id: MONDO:0016559
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Glaucoma secondary to spherophakia/ectopia lentis and megalocornea is a rare, genetic, non-syndromic developmental defect of the eye disorder characterized by congenital megalocornea associated with spherophakia and/or ectopia lentis leading to pupillary block and secondary glaucoma. Additional features may include flat irides, iridodonesis, axial myopia, very deep anterior chambers, miotic, oval pupils without well-defined borders, ocular pain and irritability manifesting as conjunctival injection, corneal edema and central scarring, as well as a high arched palate.","definition_xrefs":["Orphanet:238763"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microspherophakia and/or megalocornea, with ectopia lentis and with or without secondary glaucoma","termid":"MONDO:0009633"},{"relation_name":"is_a","term_name":"hereditary glaucoma","termid":"MONDO:0018174"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"glaucoma secondary to spherophakia/ectopia lentis and megalocornea","secondary_identifiers":["GARD:10942","UMLS:C5190883","MEDGEN:1674483"],"synonyms":[{"name":"megalocornea-spherophakia-secondary glaucoma syndrome","type":"exact"}],"termid":"MONDO:0016559","xrefs":{"Monarch":{"xref_id":"0016559"}}}


id: PBO:0018170
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNF2 family ATP-dependent DNA helicase Rhp26","termid":"PBO:0018170"}


id: GO:0033836
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-glucose + a flavonol = UDP + a flavonol 7-O-beta-D-glucoside.","definition_xrefs":["EC:2.4.1.237"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucosyltransferase activity","termid":"GO:0046527"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016757","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"flavonol 7-O-beta-glucosyltransferase activity","secondary_identifiers":["RHEA:23164","MetaCyc:2.4.1.237-RXN"],"synonyms":[{"name":"UDP-glucose:flavonol 7-O-beta-D-glucosyltransferase activity","type":"related"},{"name":"UDP-glucose:flavonol 7-O-glucosyltransferase activity","type":"related"}],"termid":"GO:0033836"}


id: PBO:0035842
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_replication_fork_pausing_at_G4_motif","termid":"PBO:0035842"}


id: PBO:0043526
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase assembly factor 7","termid":"PBO:0043526"}


id: GO:0033309
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that binds to the Swi4/6 cell cycle box (SCB) promoter element, consensus sequence CRCGAAA, and activates transcription during the G1/S transition of the cell cycle. In Saccharomyces, the complex contains a heterodimer of the DNA binding protein Swi4p and the activator Swi6p, and is associated with additional proteins known as Whi5p and Msa1p.","definition_xrefs":["PMID:7917338","GOC:mah","PMID:11206552","PMID:18160399","PMID:15838511","PMID:19150335"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II transcription regulator complex","termid":"GO:0090575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005634"],"is_obsolete":false,"name":"SBF transcription complex","synonyms":[{"name":"SBF complex","type":"exact"}],"termid":"GO:0033309"}


id: GO:0015417
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + H2O + polyamine(out) = ADP + phosphate + polyamine(in).","definition_xrefs":["RHEA:29999"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyamine transmembrane transporter activity","termid":"GO:0015203"},{"relation_name":"is_a","term_name":"ABC-type transporter activity","termid":"GO:0140359"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"ABC-type polyamine transporter activity","secondary_identifiers":["MetaCyc:3.6.3.31-RXN","GO:0015595","EC:7.6.2.11"],"synonyms":[{"name":"ATP-dependent polyamine transmembrane transporter activity","type":"related"},{"name":"ATPase-coupled polyamine transmembrane transporter activity","type":"related"},{"name":"ATPase-coupled spermidine transmembrane transporter activity","type":"narrow"},{"name":"polyamine ABC transporter","type":"narrow"},{"name":"polyamine porter activity","type":"broad"},{"name":"polyamine-importing ATPase activity","type":"narrow"},{"name":"polyamine-transporting ATPase activity","type":"related"},{"name":"spermidine porter activity","type":"narrow"},{"name":"spermidine-importing ATPase activity","type":"narrow"}],"termid":"GO:0015417"}


id: GO:0008990
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing N2-methylguanine.","definition_xrefs":["PMID:17389639"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-methyltransferase activity","termid":"GO:0008170"},{"relation_name":"is_a","term_name":"rRNA (guanine) methyltransferase activity","termid":"GO:0016435"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0140098"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0003824","GO:0140098","GO:0016741"],"is_obsolete":false,"name":"rRNA (guanine-N2-)-methyltransferase activity","secondary_identifiers":["KEGG_REACTION:R07234"],"synonyms":[{"name":"S-adenosyl-L-methionine:rRNA (guanine-2-N-)-methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:rRNA (guanine-N2-)-methyltransferase activity","type":"related"},{"name":"ribosomal ribonucleate guanine-2-methyltransferase activity","type":"related"}],"termid":"GO:0008990"}


id: PBO:0038871
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aarF domain containing kinase 2","termid":"PBO:0038871"}


id: MONDO:0014698
data:
  {"annotated_genes":["SJAG_00390"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85385],"is_not":false,"summary":null,"term":"MONDO:0014698"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"eye disorder","termid":"MONDO:0005328"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00390":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"microcephaly-intellectual disability-sensorineural hearing loss-epilepsy-abnormal muscle tone syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C4225276","MEDGEN:895574","OMIM:616577","Orphanet:457351","GARD:17804"],"synonyms":[{"name":"EHLMRS","type":"related"},{"name":"epilepsy, hearing loss, and intellectual disability syndrome","type":"related"},{"name":"epilepsy, hearing loss, and mental retardation syndrome","type":"related"},{"name":"microcephaly-intellectual disability-sensorineural deafness-epilepsy-abnormal muscle tone syndrome","type":"exact"},{"name":"neurodevelopmental disorder with hearing loss, seizures, and brain abnormalities","type":"exact"}],"termid":"MONDO:0014698","terms_by_termid":{"MONDO:0014698":null},"xrefs":{"Monarch":{"xref_id":"0014698"}}}


id: MONDO:0019636
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Unilateral renal agenesis (URA) is a form of renal agenesis characterized by the complete absence of development of one kidney accompanied by an absent ureter.","definition_xrefs":["Orphanet:93100"],"direct_ancestors":[{"relation_name":"is_a","term_name":"renal agenesis","termid":"MONDO:0018470"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"renal agenesis, unilateral","secondary_identifiers":["GARD:16804","ICD10CM:Q60.0","MEDGEN:75607","UMLS:C0266294","icd11.foundation:760295498","MedDRA:10053624","NCIT:C101220"],"synonyms":[{"name":"congenital single kidney","type":"exact"},{"name":"congenital solitary kidney","type":"exact"},{"name":"unilateral renal agenesis","type":"exact"}],"termid":"MONDO:0019636","xrefs":{"Monarch":{"xref_id":"0019636"}}}


id: MONDO:0001150
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disorder characterized by an abnormal increase of cerebrospinal fluid in the ventricles of the brain.","definition_xrefs":["NCIT:C3111"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"neurodegenerative disease","termid":"MONDO:0005559"},{"relation_name":"is_a","term_name":"brain disorder","termid":"MONDO:0005560"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydrocephalus","secondary_identifiers":["icd11.foundation:574533444","DOID:10908","ICD10CM:G91","SCTID:230745008","UMLS:C0020255","MEDGEN:9335","MESH:D006849"],"synonyms":[{"name":"hydrocephalus, X-linked","type":"narrow"},{"name":"hydrocephalus, nonsyndromic, autosomal recessive","type":"narrow"}],"termid":"MONDO:0001150","xrefs":{"Monarch":{"xref_id":"0001150"}}}


id: PBO:0044701
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD-box helicase 3 X-linked","termid":"PBO:0044701"}


id: PBO:0076514
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"taste 2 receptor member 15 pseudogene","termid":"PBO:0076514"}


id: MONDO:0004933
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hypoplastic left heart syndrome (HLHS) refers to the abnormal development of the left-sided cardiac structures, resulting in obstruction to blood flow from the left ventricular outflow tract. In addition, the syndrome includes underdevelopment of the left ventricle, aorta, and aortic arch, as well as mitral atresia or stenosis.","definition_xrefs":["Orphanet:2248"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital left-sided heart lesions","termid":"MONDO:0005584"},{"relation_name":"is_a","term_name":"univentricular cardiopathy","termid":"MONDO:0019820"},{"relation_name":"is_a","term_name":"cardiogenetic disease","termid":"MONDO:0100547"},{"relation_name":"is_a","term_name":"syndromic congenital heart disease","termid":"MONDO:0100614"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"hypoplastic left heart syndrome","secondary_identifiers":["UMLS:C0152101","NANDO:1200705","MEDGEN:57746","MESH:D018636","OMIMPS:241550","SCTID:62067003","DOID:9955","NCIT:C98894","MedDRA:10021076","icd11.foundation:1811800027","NANDO:2200249","GARD:6739","ICD9:746.7","NANDO:2100071","ICD10CM:Q23.4"],"synonyms":[{"name":"HLHS","type":"exact"}],"termid":"MONDO:0004933","xrefs":{"Monarch":{"xref_id":"0004933"}}}


id: GO:0102879
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = (+)-thujopsene + diphosphoric acid.","definition_xrefs":["GOC:pz","RHEA:30375"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on phosphates","termid":"GO:0016838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"(+)-thujopsene synthase activity","secondary_identifiers":["EC:4.2.3.79","MetaCyc:RXN-8418"],"termid":"GO:0102879"}


id: PBO:0070861
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L13 pseudogene 14","termid":"PBO:0070861"}


id: PBO:0090806
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centromeric adaptor, shugoshin Sgo2","termid":"PBO:0090806"}


id: PBO:0049525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2A.Z variant histone 1","termid":"PBO:0049525"}


id: PBO:0043525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COA6 antisense RNA 1","termid":"PBO:0043525"}


id: PBO:0069778
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1062, pseudogene","termid":"PBO:0069778"}


id: MONDO:0008208
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"patella, familial recurrent dislocation of","secondary_identifiers":["MESH:C566816","OMIM:169000","UMLS:C1868575","MEDGEN:358245"],"synonyms":[{"name":"patella, familial recurrent dislocation of","type":"exact"}],"termid":"MONDO:0008208","xrefs":{"Monarch":{"xref_id":"0008208"}}}


id: PBO:0064291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasminogen like B2","termid":"PBO:0064291"}


id: SO:0002322
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A stop_gained (SO:0001587) variant that allows the transcript to escape nonsense-mediated decay (NMD).","definition_xrefs":["GenCC:AR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"stop_gained","termid":"SO:0001587"},{"relation_name":"is_a","term_name":"NMD_escaping_variant","termid":"SO:0002320"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stop_gained_NMD_escaping","synonyms":[{"name":"stop gained variant-nonsense-mediated decay escaping","type":"exact"},{"name":"stop gained-NMD escaping","type":"exact"}],"termid":"SO:0002322"}


id: PBO:0058792
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 7161","termid":"PBO:0058792"}


id: PBO:0055052
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2468","termid":"PBO:0055052"}


id: PBO:0071552
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L35a pseudogene 17","termid":"PBO:0071552"}


id: GO:0006409
data:
  {"annotated_genes":["SJAG_03156","SJAG_02661","SJAG_00178","SJAG_04622","SJAG_04083"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72401,78929,105647,106120],"is_not":false,"summary":null,"term":"GO:0006409"},{"annotations":[79947],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071528"}]},"cv_name":"biological_process","definition":"The directed movement of tRNA from the nucleus to the cytoplasm.","definition_xrefs":["GOC:ma"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA export from nucleus","termid":"GO:0006405"},{"relation_name":"is_a","term_name":"tRNA transport","termid":"GO:0051031"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00178":null,"SJAG_02661":null,"SJAG_03156":null,"SJAG_04083":null,"SJAG_04622":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006913"}],"interesting_parent_ids":["GO:0006913","GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"tRNA export from nucleus","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"tRNA export from cell nucleus","type":"exact"},{"name":"tRNA export out of nucleus","type":"exact"},{"name":"tRNA transport from nucleus to cytoplasm","type":"exact"},{"name":"tRNA-nucleus export","type":"exact"}],"termid":"GO:0006409","terms_by_termid":{"GO:0006409":null,"GO:0071528":null}}


id: PATO:0001525
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A sound frequency in the range of 20 to 20.000 Hz.","direct_ancestors":[{"relation_name":"is_a","term_name":"sound frequency","termid":"PATO:0001520"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sonic","termid":"PATO:0001525"}


id: GO:1901270
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of lipooligosaccharide.","definition_xrefs":["GOC:TermGenie","GOC:yaf","UniPathway:UPA00501"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate derivative catabolic process","termid":"GO:1901136"},{"relation_name":"is_a","term_name":"lipooligosaccharide metabolic process","termid":"GO:1901269"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lipooligosaccharide catabolic process","synonyms":[{"name":"lipooligosaccharide breakdown","type":"exact"},{"name":"lipooligosaccharide catabolism","type":"exact"},{"name":"lipooligosaccharide degradation","type":"exact"}],"termid":"GO:1901270"}


id: PBO:0029304
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cell_wall","termid":"PBO:0029304"}


id: PBO:0085361
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phosphoprotein of the mRNA cap-binding complex; involved in translational control; repressor of cap-dependent translational initiation; translational activator of select mRNAs during filamentous growth; competes with eIF4G for binding to eIF4E","termid":"PBO:0085361"}


id: PBO:0068951
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 195, pseudogene","termid":"PBO:0068951"}


id: GO:0048506
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of a change in identity of a meristem at a characteristic predetermined time point.","definition_xrefs":["GOC:tb","GOC:dph","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of development, heterochronic","termid":"GO:0040034"},{"relation_name":"is_a","term_name":"regulation of meristem development","termid":"GO:0048509"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of timing of meristematic phase transition","termid":"GO:0048506"}


id: PBO:0028831
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-Mei2_nuclear_dot_absent_from_cell","termid":"PBO:0028831"}


id: PBO:0078693
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Leu (anticodon AAG) 4-1","termid":"PBO:0078693"}


id: GO:0006760
data:
  {"annotated_genes":["SJAG_03275","SJAG_01466","SJAG_03712","SJAG_03914","SJAG_04156","SJAG_01126","SJAG_00815","SJAG_02225","SJAG_03224","SJAG_01766","SJAG_01616","SJAG_01198","SJAG_00529","SJAG_02408","SJAG_00106"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[112798,108723],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009257"},{"annotations":[68881],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006761"},{"annotations":[71389],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046452"},{"annotations":[105155,108724,112799,60706,57122,69368,106457],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046656"},{"annotations":[71391],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046655"},{"annotations":[72952],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009396"},{"annotations":[57120,71390,80135,106458,60708],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046654"},{"annotations":[105156,76939,76108,71457,59785,72268,72951,61283],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035999"},{"annotations":[68882,72632],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046901"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving a folic acid-containing compound, i.e. any of a group of heterocyclic compounds based on the pteroic acid skeleton conjugated with one or more L-glutamic acid or L-glutamate units.","definition_xrefs":["GOC:mah","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified amino acid metabolic process","termid":"GO:0006575"},{"relation_name":"is_a","term_name":"pteridine-containing compound metabolic process","termid":"GO:0042558"}],"gene_count":15,"genes_by_uniquename":{"SJAG_00106":null,"SJAG_00529":null,"SJAG_00815":null,"SJAG_01126":null,"SJAG_01198":null,"SJAG_01466":null,"SJAG_01616":null,"SJAG_01766":null,"SJAG_02225":null,"SJAG_02408":null,"SJAG_03224":null,"SJAG_03275":null,"SJAG_03712":null,"SJAG_03914":null,"SJAG_04156":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"folic acid-containing compound metabolic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000043":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"folate and derivative metabolic process","type":"exact"},{"name":"folate and derivative metabolism","type":"exact"},{"name":"folate-containing compound metabolic process","type":"exact"},{"name":"folate-containing compound metabolism","type":"exact"},{"name":"folic acid and derivative metabolic process","type":"exact"},{"name":"folic acid and derivative metabolism","type":"exact"},{"name":"folic acid-containing compound metabolism","type":"exact"},{"name":"vitamin B9 and derivative metabolic process","type":"exact"},{"name":"vitamin B9 and derivative metabolism","type":"exact"},{"name":"vitamin M and derivative metabolic process","type":"exact"},{"name":"vitamin M and derivative metabolism","type":"exact"}],"termid":"GO:0006760","terms_by_termid":{"GO:0006761":null,"GO:0009257":null,"GO:0009396":null,"GO:0035999":null,"GO:0046452":null,"GO:0046654":null,"GO:0046655":null,"GO:0046656":null,"GO:0046901":null}}


id: GO:0062119
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that associates with chromatin to form linear elements in fission yeast. In S. pombe, the LinE complex contains four main structural components (Rec10, Rec25, Rec27, and Mug20) and other associated proteins.","definition_xrefs":["PMID:30640914"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005634","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"LinE complex","termid":"GO:0062119"}


id: MONDO:0005774
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A condition resulting from infection by Burkholderia mallei, which mainly affects horses.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary bacterial infectious disease","termid":"MONDO:0000314"},{"relation_name":"is_a","term_name":"burkholderia infectious disease","termid":"MONDO:0043953"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glanders","secondary_identifiers":["UMLS:C0017589","DOID:13444","icd11.foundation:1563156715","NCIT:C34638","ICD9:024","MESH:D005896","ICD10CM:A24.0","SCTID:4639008","EFO:0007286","MEDGEN:42221","Orphanet:659908"],"synonyms":[{"name":"Burkholderia mallei","type":"related"},{"name":"Burkholderia mallei caused disease or disorder","type":"exact"},{"name":"Burkholderia mallei disease or disorder","type":"exact"},{"name":"Burkholderia mallei infection","type":"related"},{"name":"Burkholderia mallei infectious disease","type":"exact"},{"name":"farcy pipes","type":"exact"},{"name":"infection due to Pseudomonas mallei","type":"exact"}],"termid":"MONDO:0005774","xrefs":{"Monarch":{"xref_id":"0005774"}}}


id: MONDO:0002822
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant epithelial neoplasm characterized by the presence of a trabecular glandular architectural pattern.","definition_xrefs":["NCIT:C4068"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenocarcinoma","termid":"MONDO:0004970"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"trabecular adenocarcinoma","secondary_identifiers":["ICDO:8332/3","UMLS:C0302182","DOID:3965","ICDO:8190/3","MEDGEN:86214"],"synonyms":[{"name":"Merkel cell carcinoma","type":"related"},{"name":"trabecula adenocarcinoma","type":"exact"},{"name":"trabecular adenocarcinoma","type":"exact"},{"name":"trabecular adenocarcinoma (morphologic abnormality)","type":"exact"},{"name":"trabecular carcinoma","type":"exact"}],"termid":"MONDO:0002822","xrefs":{"Monarch":{"xref_id":"0002822"}}}


id: GO:1990516
data:
  {"annotated_genes":["SJAG_02039"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[98479],"is_not":false,"summary":null,"term":"GO:1990516"}]},"cv_name":"biological_process","definition":"The pathway by which a ribonucleotide is removed from DNA and replaced by a deoxyribonucleotide. The ribonucleotide is incised by RNase H2, and further excised by an endonuclease. The resulting 1 nt gap is then repaired by DNA polymerase and DNA ligase.","definition_xrefs":["PMID:12475934","PMID:22864116"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mismatch repair involved in maintenance of fidelity involved in DNA-dependent DNA replication","termid":"GO:0070716"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02039":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006260"},{"rel_name":"is_a","termid":"GO:0006281"}],"interesting_parent_ids":["GO:0006260","GO:0006281","GO:0008150","GO:0006259"],"is_obsolete":false,"name":"ribonucleotide excision repair","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1990516","terms_by_termid":{"GO:1990516":null}}


id: MONDO:0004660
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A carcinoma in situ involving a lung.","definition_xrefs":["MONDO:patterns/carcinoma_in_situ"],"direct_ancestors":[{"relation_name":"is_a","term_name":"in situ carcinoma","termid":"MONDO:0004647"},{"relation_name":"is_a","term_name":"lung carcinoma","termid":"MONDO:0005138"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"lung carcinoma in situ","secondary_identifiers":["UMLS:C0685053","SCTID:92649001","NCIT:C27467","DOID:8800","ICD9:231.2","MEDGEN:146894"],"synonyms":[{"name":"bronchial carcinoma in situ","type":"exact"},{"name":"carcinoma in situ of lung","type":"exact"},{"name":"lung in situ carcinoma","type":"exact"},{"name":"stage 0 lung cancer","type":"exact"},{"name":"stage 0 lung cancer aJCC v6","type":"exact"},{"name":"stage 0 lung cancer aJCC v6 and v7","type":"exact"},{"name":"stage 0 lung cancer aJCC v7","type":"exact"},{"name":"stage 0 lung carcinoma","type":"exact"}],"termid":"MONDO:0004660","xrefs":{"Monarch":{"xref_id":"0004660"}}}


id: PBO:0083181
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; completely overlaps the long terminal repeat (LTR) of a Ty1 element","termid":"PBO:0083181"}


id: GO:0015531
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: citrate(out) + H+(out) = citrate(in) + H+(in).","definition_xrefs":["TC:2.A.1.6.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"solute:proton symporter activity","termid":"GO:0015295"},{"relation_name":"is_a","term_name":"citrate secondary active transmembrane transporter activity","termid":"GO:0071913"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"citrate:proton symporter activity","secondary_identifiers":["RHEA:32123"],"synonyms":[{"name":"citrate:hydrogen symporter activity","type":"exact"}],"termid":"GO:0015531"}


id: MONDO:0009682
data:
  {"annotated_genes":["SJAG_02103","SJAG_00804"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86126,86127],"is_not":false,"summary":null,"term":"MONDO:0009682"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital muscular dystrophy","termid":"MONDO:0019950"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00804":null,"SJAG_02103":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320","MONDO:0005336"],"is_obsolete":false,"name":"muscular dystrophy, congenital, with rapid progression","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:254100","MEDGEN:338135","MESH:C564983","UMLS:C1850840"],"synonyms":[{"name":"muscular dystrophy, congenital, with rapid progression","type":"exact"}],"termid":"MONDO:0009682","terms_by_termid":{"MONDO:0009682":null},"xrefs":{"Monarch":{"xref_id":"0009682"}}}


id: PBO:0060926
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor","termid":"PBO:0060926"}


id: PBO:0036176
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-delayed_onset_of_protein_phosphorylation_during_mitosis","termid":"PBO:0036176"}


id: MONDO:1011444
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Neuroaxonal dystrophy that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neurodegenerative disease, non-human animal","termid":"MONDO:1012953"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuroaxonal dystrophy, non-human animal","secondary_identifiers":["OMIA:000715"],"termid":"MONDO:1011444","xrefs":{"Monarch":{"xref_id":"1011444"}}}


id: PBO:0056370
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitogen-activated protein kinase 7","termid":"PBO:0056370"}


id: GO:0004932
data:
  {"annotated_genes":["SJAG_01345","SJAG_01978"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[75777],"is_not":false,"summary":null,"term":"GO:0004932"},{"annotations":[88502],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036320"}]},"cv_name":"molecular_function","definition":"Combining with a mating-type factor pheromone to initiate a change in cell activity.","definition_xrefs":["GOC:dph","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled peptide receptor activity","termid":"GO:0008528"},{"relation_name":"is_a","term_name":"pheromone receptor activity","termid":"GO:0016503"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01345":null,"SJAG_01978":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"mating-type factor pheromone receptor activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0004932","terms_by_termid":{"GO:0004932":null,"GO:0036320":null}}


id: PBO:0081087
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger DHHC-type palmitoyltransferase 17","termid":"PBO:0081087"}


id: GO:0102451
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: kaempferide + S-adenosyl-L-methionine = 3,4'-O-dimethylkaempferol + H+ + S-adenosyl-L-homocysteine.","definition_xrefs":["RHEA:74755"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016741"],"is_obsolete":false,"name":"kaempferide 3-O-methyltransferase activity","secondary_identifiers":["MetaCyc:RXN-13937"],"termid":"GO:0102451"}


id: CHEBI:16907
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4-nitroquinoline N-oxide","termid":"CHEBI:16907"}


id: PBO:0017597
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein Ssz1 (predicted)","termid":"PBO:0017597"}


id: PBO:0114108
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA cleavage and polyadenylation specificity factor complex, WD repeat subunit Swd22","termid":"PBO:0114108"}


id: GO:0019750
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which a chloroplast is transported to, and/or maintained in, a specific location within the cell. A chloroplast is a chlorophyll-containing plastid found in cells of algae and higher plants.","definition_xrefs":["GOC:bf","ISBN:0198506732","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plastid localization","termid":"GO:0051644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"chloroplast localization","synonyms":[{"name":"chloroplast localisation","type":"exact"}],"termid":"GO:0019750"}


id: FYPO:0002669
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of peptide-glutamate-N-acetyltransferase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal peptide alpha-N-acetyltransferase activity","termid":"FYPO:0007839"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0000654","FYPO:0000652","FYPO:0001985","FYPO:0000707"],"is_obsolete":false,"name":"abnormal peptide-glutamate-N-acetyltransferase activity","termid":"FYPO:0002669"}


id: FYPO:0002523
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of NADPH-hemoprotein reductase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal oxidoreductase activity","termid":"FYPO:0000689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000661","FYPO:0000707","FYPO:0001985","FYPO:0000652"],"is_obsolete":false,"name":"abnormal NADPH-hemoprotein reductase activity","termid":"FYPO:0002523"}


id: PBO:0030749
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cellular_response_to_arsenic","termid":"PBO:0030749"}


id: GO:0005207
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete extracellular matrix glycoprotein (obsolete GO:0005207)","synonyms":[{"name":"extracellular matrix glycoprotein","type":"exact"}],"termid":"GO:0005207"}


id: FYPO:0006024
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the binding of a protein to one or more actin filaments is normal (i.e. indistinguishable from wild type). The relevant actin-binding protein may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein complex binding","termid":"FYPO:0005232"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000702"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000652","FYPO:0000702"],"is_obsolete":false,"name":"normal actin filament binding","synonyms":[{"name":"normal F-actin binding","type":"exact"},{"name":"normal filamentous actin binding","type":"exact"}],"termid":"FYPO:0006024"}


id: MONDO:0800502
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A group of conditions characterized by age-dependent occurrence in otherwise normal children. Cognition and neurological evaluation are typically normal. Remission occurs in almost all patients by puberty. Presumed genetic factors have an important role. Seizure semiology and electroencephalographic (EEG) features are specific for each of the syndromes included in this group.","definition_xrefs":["PMID:35503717"],"direct_ancestors":[{"relation_name":"is_a","term_name":"focal epilepsy","termid":"MONDO:0005384"},{"relation_name":"is_a","term_name":"childhood-onset epilepsy syndrome","termid":"MONDO:0020072"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"childhood-onset self-limited focal epilepsy syndrome","synonyms":[{"name":"childhood-onset SeLFE","type":"exact"}],"termid":"MONDO:0800502","xrefs":{"Monarch":{"xref_id":"0800502"}}}


id: PBO:0079687
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin family domain containing 1 pseudogene 1","termid":"PBO:0079687"}


id: PBO:0001418
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromodomain protein Chp1","termid":"PBO:0001418"}


id: PBO:0042622
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"caudal type homeobox 2","termid":"PBO:0042622"}


id: GO:2000234
data:
  {"annotated_genes":["SJAG_04890","SJAG_01764"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[75803,78328],"is_not":false,"summary":null,"term":"GO:2000234"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of rRNA processing.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of RNA metabolic process","termid":"GO:0051254"},{"relation_name":"is_a","term_name":"regulation of rRNA processing","termid":"GO:2000232"},{"relation_name":"positively_regulates","term_name":"rRNA processing","termid":"GO:0006364"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01764":null,"SJAG_04890":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of rRNA processing","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"positive regulation of 35S primary transcript processing","type":"related"}],"termid":"GO:2000234","terms_by_termid":{"GO:2000234":null}}


id: PBO:0002619
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6.3.4.4","termid":"PBO:0002619"}


id: FYPO:0007250
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of lipid binding by a gene product (usually a protein) in a mutant is abnormal. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal molecular function","termid":"FYPO:0000707"},{"relation_name":"is_a","term_name":"binding phenotype","termid":"FYPO:0001092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000707","FYPO:0001985"],"is_obsolete":false,"name":"abnormal lipid binding","termid":"FYPO:0007250"}


id: GO:0021982
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the pineal gland over time from its initial formation until its mature state. The pineal gland is an endocrine gland that secretes melatonin and is involved in circadian rhythms.","definition_xrefs":["GOC:jid","GOC:dph","GO_REF:0000021","GOC:cls","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gland development","termid":"GO:0048732"},{"relation_name":"part_of","term_name":"diencephalon development","termid":"GO:0021536"},{"relation_name":"part_of","term_name":"endocrine system development","termid":"GO:0035270"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pineal gland development","synonyms":[{"name":"epiphysis development","type":"exact"}],"termid":"GO:0021982"}


id: PBO:0062048
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily T member 35","termid":"PBO:0062048"}


id: MONDO:0700274
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hereditary cancer predisposition due to variation(s) in the RAD51D gene. Pathogenic germline variation in RAD51D confers an autosomal dominant predisposition to tumor formation at multiple primary sites, including ovarian cancer, triple negative breast cancer and ER negative breast cancer.","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary neoplastic syndrome","termid":"MONDO:0015356"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAD51D-related cancer predisposition","termid":"MONDO:0700274","xrefs":{"Monarch":{"xref_id":"0700274"}}}


id: MONDO:0005139
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An excess of body weight, normally defined as an individual with a body mass index greater than 35 or a body weight greater than one hundred percent of ideal body weight.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"obesity disorder","termid":"MONDO:0011122"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"morbid obesity","secondary_identifiers":["DOID:11981","EFO:0001074","ICD9:278.01","MEDGEN:18128","MESH:D009767","NIFSTD:nlx_dys_20090303","SCTID:83911000119104","UMLS:C0028756"],"synonyms":[{"name":"severe obesity","type":"exact"}],"termid":"MONDO:0005139","xrefs":{"Monarch":{"xref_id":"0005139"}}}


id: GO:2000338
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of chemokine (C-X-C motif) ligand 1 production.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of chemokine production","termid":"GO:0032642"},{"relation_name":"regulates","term_name":"chemokine (C-X-C motif) ligand 1 production","termid":"GO:0072566"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of chemokine (C-X-C motif) ligand 1 production","synonyms":[{"name":"regulation of CXCL1 production","type":"exact"},{"name":"regulation of KC production","type":"exact"},{"name":"regulation of SCYB1 production","type":"exact"},{"name":"regulation of keratinocyte derived chemokine production","type":"exact"}],"termid":"GO:2000338"}


id: SO:0001126
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A motif of five consecutive residues and two hydrogen bonds in which: residue(i) is Serine (S) or Threonine (T), the side-chain O of residue(i) is H-bonded to the main-chain NH of residue(i+2) or (i+3) , the main-chain CO group of residue(i) is H-bonded to the main-chain NH of residue(i+3) or (i+4).","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polypeptide_secondary_structure","termid":"SO:0001078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"serine_threonine_motif","secondary_identifiers":["BS:00229"],"synonyms":[{"name":"serine/threonine motif","type":"exact"},{"name":"st motif","type":"exact"},{"name":"st_motif","type":"exact"}],"termid":"SO:0001126"}


id: GO:0102246
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: aminodeoxyfutalosinate + H2O = dehypoxanthine futalosine + adenine.","definition_xrefs":["GOC:pz","EC:3.2.2.30"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing N-glycosyl compounds","termid":"GO:0016799"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"}],"interesting_parent_ids":["GO:0016787","GO:0016798","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"6-amino-6-deoxyfutalosine hydrolase activity","secondary_identifiers":["RHEA:33079","MetaCyc:RXN-12346"],"termid":"GO:0102246"}


id: PBO:0076968
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TGFB induced factor homeobox 2 like Y-linked","termid":"PBO:0076968"}


id: PBO:0052517
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KLHL30 antisense RNA 1","termid":"PBO:0052517"}


id: MONDO:0005582
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Recurrent episodes of over-eating.","definition_xrefs":["NCIT:C97162"],"direct_ancestors":[{"relation_name":"is_a","term_name":"eating disorder","termid":"MONDO:0005451"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"binge eating disorder","secondary_identifiers":["MESH:D002032","EFO:0005924","SCTID:439960005","UMLS:C0596170","MEDGEN:154543","icd11.foundation:1673294767"],"synonyms":[{"name":"binge eating","type":"exact"},{"name":"binge eating disorder","type":"exact"}],"termid":"MONDO:0005582","xrefs":{"Monarch":{"xref_id":"0005582"}}}


id: PBO:0066776
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 74","termid":"PBO:0066776"}


id: GO:0060565
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that prevents the activation of APC-Cdc20 complex activity regulating the mitotic cell cycle.","definition_xrefs":["GOC:dph","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete inhibition of APC-Cdc20 complex activity (obsolete GO:0060565)","synonyms":[{"name":"inhibition of APC activity during mitotic cell cycle","type":"exact"},{"name":"inhibition of APC-Cdc20 complex activity","type":"exact"},{"name":"inhibition of APC/C activity during mitotic cell cycle","type":"related"},{"name":"inhibition of cyclosome activity during mitotic cell cycle","type":"related"},{"name":"inhibition of mitotic anaphase-promoting complex activity","type":"related"}],"termid":"GO:0060565"}


id: GO:0043749
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: phenol + MgATP + H2O = phenylphosphate + MgAMP + orthophosphate.","definition_xrefs":["PMID:15547277"],"gene_count":0,"genotype_count":0,"name":"obsolete phenol, water dikinase activity (obsolete GO:0043749)","synonyms":[{"name":"ATP:phenol:water phosphotransferase activity","type":"exact"},{"name":"phenol:water dikinase activity","type":"exact"},{"name":"phenylphosphate synthase activity","type":"exact"}],"termid":"GO:0043749"}


id: MONDO:0020337
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital dyserythropoietic anemiatype I (CDA I) is a hematologic disorder of erythropoiesis characterized by moderate to severe macrocytic anemia occasionally associated with limb or nail deformities and scoliosis.","definition_xrefs":["Orphanet:98869"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital anemia","termid":"MONDO:0000577"},{"relation_name":"is_a","term_name":"congenital dyserythropoietic anemia","termid":"MONDO:0019403"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0002280"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0002280"],"is_obsolete":false,"name":"congenital dyserythropoietic anemia type 1","secondary_identifiers":["MEDGEN:82891","NANDO:1200886","SCTID:59548005","DOID:0111396","UMLS:C0271933","GARD:2000"],"synonyms":[{"name":"CDA I","type":"exact"},{"name":"CDA type 1","type":"exact"},{"name":"CDA type I","type":"exact"},{"name":"anemia, dyserythropoietic, congenital type 1","type":"related"},{"name":"congenital dyserythropoietic anemia type 1","type":"exact"},{"name":"dyserythropoietic anemia, congenital type 1","type":"related"},{"name":"type I congenital dyserythropoietic anaemia","type":"related"},{"name":"type I congenital dyserythropoietic anemia","type":"related"}],"termid":"MONDO:0020337","xrefs":{"Monarch":{"xref_id":"0020337"}}}


id: GO:0010623
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The activation of endogenous cellular processes that result in the death of a cell as part of its development.","definition_xrefs":["GOC:mtg_apoptosis","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"programmed cell death","termid":"GO:0012501"},{"relation_name":"is_a","term_name":"cellular developmental process","termid":"GO:0048869"},{"relation_name":"part_of","term_name":"cell development","termid":"GO:0048468"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"programmed cell death involved in cell development","synonyms":[{"name":"developmental programmed cell death","type":"broad"},{"name":"programmed cell death involved in development","type":"broad"}],"termid":"GO:0010623"}


id: MONDO:0023196
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"frontonasal malformation cloacal exstrophy","synonyms":[{"name":"fronto nasal malformation cloacal exstrophy","type":"related"}],"termid":"MONDO:0023196","xrefs":{"Monarch":{"xref_id":"0023196"}}}


id: PBO:0043454
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calponin 3 pseudogene 1","termid":"PBO:0043454"}


id: PBO:0001286
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial coenzyme A transporter (predicted)","termid":"PBO:0001286"}


id: PBO:0005275
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transaldolase (predicted)","termid":"PBO:0005275"}


id: GO:0034401
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any cellular process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin that modulates the rate, frequency or extent of DNA-dependent transcription.","definition_xrefs":["PMID:21102443","GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete chromatin organization involved in regulation of transcription (obsolete GO:0034401)","synonyms":[{"name":"activation of global transcription from RNA polymerase II promoter by histone modification","type":"narrow"},{"name":"activation of transcription from RNA polymerase II promoter by histone modification","type":"narrow"},{"name":"establishment or maintenance of chromatin architecture during transcription","type":"exact"},{"name":"positive regulation of gene-specific transcription from RNA polymerase II promoter by histone modification","type":"narrow"},{"name":"positive regulation of global transcription from Pol II promoter by histone modification","type":"narrow"},{"name":"positive regulation of transcription from Pol II promoter by histone modification","type":"narrow"},{"name":"positive regulation of transcription from RNA polymerase II promoter by histone modification","type":"narrow"},{"name":"positive regulation of transcription from RNA polymerase II promoter, global by histone modification","type":"narrow"},{"name":"regulation of gene-specific transcription from RNA polymerase II promoter by histone modification","type":"narrow"},{"name":"regulation of global transcription from Pol II promoter by histone modification","type":"narrow"},{"name":"regulation of transcription by chromatin organisation","type":"exact"},{"name":"regulation of transcription by chromatin organization","type":"exact"},{"name":"regulation of transcription from Pol II promoter by histone modification","type":"narrow"},{"name":"regulation of transcription from RNA polymerase II promoter by histone modification","type":"narrow"},{"name":"regulation of transcription from RNA polymerase II promoter, global by histone modification","type":"narrow"},{"name":"stimulation of global transcription from RNA polymerase II promoter by histone modification","type":"narrow"},{"name":"stimulation of transcription from RNA polymerase II promoter by histone modification","type":"narrow"},{"name":"up regulation of global transcription from RNA polymerase II promoter by histone modification","type":"narrow"},{"name":"up regulation of transcription from RNA polymerase II promoter by histone modification","type":"narrow"},{"name":"up-regulation of global transcription from RNA polymerase II promoter by histone modification","type":"narrow"},{"name":"up-regulation of transcription from RNA polymerase II promoter by histone modification","type":"narrow"},{"name":"upregulation of global transcription from RNA polymerase II promoter by histone modification","type":"narrow"},{"name":"upregulation of transcription from RNA polymerase II promoter by histone modification","type":"narrow"}],"termid":"GO:0034401"}


id: FYPO:0005991
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the cell cortex of the cell tip during karyogamy involved in conjugation with cellular fusion is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to cell cortex of cell tip","termid":"FYPO:0006876"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001312","FYPO:0000138","FYPO:0000257","FYPO:0001320"],"is_obsolete":false,"name":"normal protein localization to cell cortex of cell tip during karyogamy","synonyms":[{"name":"normal protein localisation to cell cortex of cell tip during karyogamy","type":"exact"},{"name":"normal protein localization to cell cortex of cell tip during karyogamy involved in conjugation with cellular fusion","type":"exact"},{"name":"normal protein localization to cell cortex of cell tip during nuclear fusion during mating","type":"exact"},{"name":"normal protein localization to cell tip cortex during karyogamy","type":"exact"}],"termid":"FYPO:0005991"}


id: GO:0018818
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acetaldehyde = acetylene + H2O.","definition_xrefs":["RHEA:17885","EC:4.2.1.112"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"acetylene hydratase activity","secondary_identifiers":["UM-BBD_reactionID:r0591","MetaCyc:R141-RXN","KEGG_REACTION:R05380"],"synonyms":[{"name":"AH","type":"related"},{"name":"AHy","type":"related"},{"name":"acetaldehyde hydro-lyase activity","type":"related"}],"termid":"GO:0018818"}


id: PBO:0081757
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF687 antisense RNA 1","termid":"PBO:0081757"}


id: MONDO:0003301
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A cutaneous leiomyoma arising from the dartos muscle of the scrotum or labia majora.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"benign reproductive system neoplasm","termid":"MONDO:0000383"},{"relation_name":"is_a","term_name":"leiomyoma cutis","termid":"MONDO:0003291"},{"relation_name":"is_a","term_name":"connective tissue neoplasm","termid":"MONDO:0021581"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"dartoic leiomyoma","secondary_identifiers":["DOID:5147","ICD9:215.9","NCIT:C4483","MEDGEN:91078","SCTID:254770007","UMLS:C0346066"],"synonyms":[{"name":"dartoic leiomyoma","type":"exact"},{"name":"dartoic myoma","type":"exact"},{"name":"dartos muscle leiomyoma","type":"exact"},{"name":"leiomyoma of dartos muscle","type":"exact"}],"termid":"MONDO:0003301","xrefs":{"Monarch":{"xref_id":"0003301"}}}


id: GO:0009359
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that functions as an endonuclease to cleave DNA at or near a specific recognition site, when that site is unmethylated. These complexes may be dimers or tetramers; it is also possible for the endonuclease to be in a complex with the corresponding methyltransferase that methylates the recognition site. DNA restriction systems such as this are used by bacteria to defend against phage and other foreign DNA that may enter a cell.","definition_xrefs":["PMID:12654995"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endodeoxyribonuclease complex","termid":"GO:1905347"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0032991"],"is_obsolete":false,"name":"type II site-specific deoxyribonuclease complex","synonyms":[{"name":"type II restriction enzyme complex","type":"exact"}],"termid":"GO:0009359"}


id: FYPO:0005535
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 16 of histone H4 in telomeric regions occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H4 acetylation during vegetative growth","termid":"FYPO:0002365"},{"relation_name":"is_a","term_name":"increased histone H4-K16 acetylation during vegetative growth","termid":"FYPO:0007632"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0002494","FYPO:0001985","FYPO:0002274"],"is_obsolete":false,"name":"increased histone H4-K16 acetylation at telomere during vegetative growth","synonyms":[{"name":"increased histone H4-K16 acetylation at telomere during mitotic cell cycle","type":"related"}],"termid":"FYPO:0005535"}


id: PBO:0054696
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2105","termid":"PBO:0054696"}


id: GO:0016606
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A nuclear body that is enriched in the lymphoid cell-specific protein LYSp100B; LANDs are globular, electron-dense structures and are morphologically distinct from the annular structures characteristic of PML bodies.","definition_xrefs":["PMID:10921892","PMID:8695863"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear body","termid":"GO:0016604"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005654"}],"interesting_parent_ids":["GO:0005654","GO:0005634","GO:0005575"],"is_obsolete":false,"name":"LYSP100-associated nuclear domain","synonyms":[{"name":"LANDs","type":"exact"}],"termid":"GO:0016606"}


id: PBO:0044098
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cancer/testis antigen family 47 member A6","termid":"PBO:0044098"}


id: MONDO:0010787
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Kearns-Sayre syndrome (KSS) is a mitochondrial disease characterized by progressive external ophthalmoplegia (PEO), pigmentary retinitis and an onset before the age of 20 years. Common additional features include deafness, cerebellar ataxia and heart block.","definition_xrefs":["Orphanet:480"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete neuro-ophthalmological disease (obsolete MONDO:0015368)","termid":"MONDO:0015368"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"progressive external ophthalmoplegia","termid":"MONDO:0005181"},{"relation_name":"is_a","term_name":"familial dilated cardiomyopathy","termid":"MONDO:0016333"},{"relation_name":"is_a","term_name":"mitochondrial oxidative phosphorylation disorder","termid":"MONDO:0016387"},{"relation_name":"is_a","term_name":"hereditary peripheral neuropathy","termid":"MONDO:0020127"},{"relation_name":"is_a","term_name":"disorder of visual system","termid":"MONDO:0024458"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0005244"},{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0004069"}],"interesting_parent_ids":["MONDO:0002320","MONDO:0004069","MONDO:0005336","MONDO:0005066","MONDO:0005244","MONDO:0005267"],"is_obsolete":false,"name":"Kearns-Sayre syndrome","secondary_identifiers":["MedDRA:10048804","NANDO:1201064","NANDO:2200529","NCIT:C84798","GARD:6817","DOID:12934","icd11.foundation:399100745","MESH:D007625","SCTID:25792000","UMLS:C0022541","OMIM:530000","MEDGEN:9618"],"synonyms":[{"name":"CPEO with myopathy","type":"related"},{"name":"CPEO with ragged red fibers","type":"related"},{"name":"CPEO with ragged red fibres","type":"related"},{"name":"CPEO with ragged-Red fibers","type":"related"},{"name":"CPEO with ragged-Red fibres","type":"related"},{"name":"KSS","type":"related"},{"name":"Kearns Sayre Syndrome","type":"exact"},{"name":"Kearns-Sayre syndrome","type":"exact"},{"name":"chronic progressive external ophthalmoplegia with myopathy","type":"related"},{"name":"mitochondrial Cytopathy","type":"related"},{"name":"oculocraniosomatic syndrome","type":"related"},{"name":"ophthalmoplegia plus syndrome","type":"related"},{"name":"ophthalmoplegia, pigmentary Degeneration of retina, and cardiomyopathy","type":"related"},{"name":"ophthalmoplegia, progressive external, with ragged red fibers","type":"related"},{"name":"ophthalmoplegia, progressive external, with ragged red fibres","type":"related"},{"name":"ophthalmoplegia, progressive external, with ragged-Red fibers","type":"related"},{"name":"ophthalmoplegia, progressive external, with ragged-Red fibres","type":"related"},{"name":"ophthalmoplegia-plus syndrome","type":"related"}],"termid":"MONDO:0010787","xrefs":{"Monarch":{"xref_id":"0010787"}}}


id: GO:0071925
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of thymic stromal lymphopoietin (TSLP) due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:mah","PMID:17129180"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chemokine production","termid":"GO:0032602"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"thymic stromal lymphopoietin production","synonyms":[{"name":"TSLP production","type":"exact"}],"termid":"GO:0071925"}


id: PBO:0049642
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H3 histone pseudogene 45","termid":"PBO:0049642"}


id: PBO:0084002
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glycerol kinase; converts glycerol to glycerol-3-phosphate; glucose repression of expression is mediated by Adr1p and Ino2p-Ino4p; derepression of expression on non-fermentable carbon sources is mediated by Opi1p and Rsf1p","termid":"PBO:0084002"}


id: GO:0044639
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant modulation of complement activation via the lectin pathway in the bitten/stung organism.","definition_xrefs":["GOC:fj","GOC:jl","PMID:20837040"],"gene_count":0,"genotype_count":0,"name":"obsolete envenomation resulting in modulation of complement activation, lectin pathway in another organism (obsolete GO:0044639)","synonyms":[{"name":"envenomation resulting in modulation of complement activation, lectin pathway in other organism","type":"exact"},{"name":"envenomation resulting in regulation of complement activation, lectin pathway in other organism","type":"exact"}],"termid":"GO:0044639"}


id: MOD:01853
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-lysine residue to L-lysinoalanine either by forming a cross-link with peptidyl-cysteine or peptidyl-serine, or by condensation with free serine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified residue that can arise from different natural residues","termid":"MOD:00859"},{"relation_name":"is_a","term_name":"modified L-lysine residue","termid":"MOD:00912"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-lysinoalanine","termid":"MOD:01853"}


id: GO:0006355
data:
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id: PBO:0004723
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id: MONDO:0003154
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id: GO:0022886
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id: FYPO:0007058
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id: PBO:0042430
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id: GO:1900574
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id: MONDO:0009026
data:
  {"annotated_genes":["SJAG_03453"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85559],"is_not":false,"summary":null,"term":"MONDO:0009026"}]},"cv_name":"mondo","definition":"Costello syndrome (CS) is a rare multisystemic disorder characterized by failure to thrive, short stature, developmental delay or intellectual disability, joint laxity, soft skin, and distinctive facial features. Cardiac and neurological involvement is common and there is an increased lifetime risk of certain tumors.","definition_xrefs":["Orphanet:3071"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"excluded_subClassOf","term_name":"obsolete dermis elastic tissue disorder (obsolete MONDO:0019292)","termid":"MONDO:0019292"},{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"},{"relation_name":"is_a","term_name":"Noonan syndrome and Noonan-related syndrome","termid":"MONDO:0020297"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03453":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0005267"],"is_obsolete":false,"name":"Costello syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:D056685","SCTID:309776008","MedDRA:10067380","NANDO:2200971","DOID:0050469","MEDGEN:108454","GARD:1550","icd11.foundation:1946512039","NCIT:C84652","UMLS:C0587248","ICD9:799.89","OMIM:218040","NANDO:1200463"],"synonyms":[{"name":"CSTLO","type":"related"},{"name":"Costello syndrome","type":"exact"},{"name":"FCS syndrome","type":"exact"},{"name":"congenital myopathy with excess of muscle spindles","type":"exact"},{"name":"faciocutaneoskeletal syndrome","type":"exact"},{"name":"myopathy, congenital, with excess of muscle spindles","type":"related"}],"termid":"MONDO:0009026","terms_by_termid":{"MONDO:0009026":null},"xrefs":{"Monarch":{"xref_id":"0009026"}}}


id: PBO:0081963
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zona pellucida like domain containing 1","termid":"PBO:0081963"}


id: PBO:0073658
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SIN3 transcription regulator family member A","termid":"PBO:0073658"}


id: GO:0045490
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues.","definition_xrefs":["PMID:11931668","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide catabolic process","termid":"GO:0000272"},{"relation_name":"is_a","term_name":"pectin metabolic process","termid":"GO:0045488"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"pectin catabolic process","synonyms":[{"name":"pectin breakdown","type":"exact"},{"name":"pectin catabolism","type":"exact"},{"name":"pectin degradation","type":"exact"}],"termid":"GO:0045490"}


id: MONDO:0014790
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital disorder of glycosylation type II","termid":"MONDO:0005501"},{"relation_name":"is_a","term_name":"disorder of multiple glycosylation","termid":"MONDO:0017749"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0024322"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0024322"],"is_obsolete":false,"name":"TMEM199-CDG","secondary_identifiers":["GARD:17825","DOID:0070268","OMIM:616829","Orphanet:466703","UMLS:C4225190","MEDGEN:895025"],"synonyms":[{"name":"CDG IIp","type":"related"},{"name":"CDG syndrome type IIp","type":"exact"},{"name":"CDG-IIp","type":"exact"},{"name":"CDG2P","type":"exact"},{"name":"carbohydrate deficient glycoprotein syndrome type IIp","type":"exact"},{"name":"congenital disorder of glycosylation type 2p","type":"exact"},{"name":"congenital disorder of glycosylation type IIp","type":"exact"},{"name":"congenital disorder of glycosylation, type IIp","type":"exact"}],"termid":"MONDO:0014790","xrefs":{"Monarch":{"xref_id":"0014790"}}}


id: PBO:0050197
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosome binding domain 1 pseudogene 14","termid":"PBO:0050197"}


id: GO:0140295
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"The activity of a pathogen-derived entity that interacts with a host receptor to activate effector-triggered immunity.","definition_xrefs":["PMID:20601497"],"direct_ancestors":[{"relation_name":"is_a","term_name":"receptor ligand activity","termid":"GO:0048018"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0098772"}],"interesting_parent_ids":["GO:0005515","GO:0140677","GO:0005488","GO:0003674","GO:0098772"],"is_obsolete":false,"name":"pathogen-derived receptor ligand activity","synonyms":[{"name":"host-selective toxin","type":"related"},{"name":"innate receptor ligand activity","type":"related"},{"name":"necrotrophic effector","type":"related"}],"termid":"GO:0140295"}


id: PBO:0042897
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement factor H related 1","termid":"PBO:0042897"}


id: GO:0061703
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an assemble of ASC dimers that is capable of inducing pyroptosis.","definition_xrefs":["GOC:dph","PMID:17599095"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"pyroptosome complex","synonyms":[{"name":"ASC pyroptosome","type":"exact"}],"termid":"GO:0061703"}


id: PBO:0055435
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2865","termid":"PBO:0055435"}


id: GO:0047252
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (1->6)-alpha-D-mannosyloligosaccharide + beta-D-mannosylphosphodecaprenol = (1->6)-alpha-D-mannosyl-(1->6)-alpha-D-mannosyl-oligosaccharide + decaprenol phosphate.","definition_xrefs":["EC:2.4.1.199","MetaCyc:2.4.1.199-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mannosyltransferase activity","termid":"GO:0000030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0003824","GO:0016757","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"beta-mannosylphosphodecaprenol-mannooligosaccharide 6-mannosyltransferase activity","synonyms":[{"name":"beta-D-mannosylphosphodecaprenol:1,6-alpha-D-mannosyloligosaccharide 1,6-alpha-D-mannosyltransferase activity","type":"related"},{"name":"mannosylphospholipid-methylmannoside alpha-1,6-mannosyltransferase activity","type":"related"}],"termid":"GO:0047252"}


id: SO:0001726
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A kind of histone modification site, whereby the 27th residue (a lysine), from the start of the H3 histone protein is di-methylated.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"H3K27_methylation_site","termid":"SO:0001732"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"H3K27_dimethylation_site","synonyms":[{"name":"H3K27 di-methylation site","type":"exact"},{"name":"H3K27Me2","type":"related"}],"termid":"SO:0001726"}


id: PBO:0047874
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, aphidicolin type, common, fra(3)(q27)","termid":"PBO:0047874"}


id: GO:1900290
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of coenzyme F420-dependent bicyclic nitroimidazole catabolic process.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of catabolic process","termid":"GO:0009896"},{"relation_name":"is_a","term_name":"regulation of coenzyme F420-dependent bicyclic nitroimidazole catabolic process","termid":"GO:1900288"},{"relation_name":"positively_regulates","term_name":"coenzyme F420-dependent bicyclic nitroimidazole catabolic process","termid":"GO:0052799"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of coenzyme F420-dependent bicyclic nitroimidazole catabolic process","synonyms":[{"name":"activation of coenzyme F420-dependent bicyclic nitroimidazole catabolic process","type":"narrow"},{"name":"activation of coenzyme F420-dependent nitroimidazole breakdown","type":"narrow"},{"name":"activation of coenzyme F420-dependent nitroimidazole catabolism","type":"narrow"},{"name":"activation of coenzyme F420-dependent nitroimidazole reduction","type":"narrow"},{"name":"activation of coenzyme F420-dependent nitroreductase activity","type":"related"},{"name":"positive regulation of coenzyme F420-dependent nitroimidazole breakdown","type":"exact"},{"name":"positive regulation of coenzyme F420-dependent nitroimidazole catabolism","type":"exact"},{"name":"positive regulation of coenzyme F420-dependent nitroimidazole reduction","type":"exact"},{"name":"positive regulation of coenzyme F420-dependent nitroreductase activity","type":"related"},{"name":"up regulation of coenzyme F420-dependent bicyclic nitroimidazole catabolic process","type":"exact"},{"name":"up regulation of coenzyme F420-dependent nitroimidazole breakdown","type":"exact"},{"name":"up regulation of coenzyme F420-dependent nitroimidazole catabolism","type":"exact"},{"name":"up regulation of coenzyme F420-dependent nitroimidazole reduction","type":"exact"},{"name":"up regulation of coenzyme F420-dependent nitroreductase activity","type":"related"},{"name":"up-regulation of coenzyme F420-dependent bicyclic nitroimidazole catabolic process","type":"exact"},{"name":"up-regulation of coenzyme F420-dependent nitroimidazole breakdown","type":"exact"},{"name":"up-regulation of coenzyme F420-dependent nitroimidazole catabolism","type":"exact"},{"name":"up-regulation of coenzyme F420-dependent nitroimidazole reduction","type":"exact"},{"name":"up-regulation of coenzyme F420-dependent nitroreductase activity","type":"related"},{"name":"upregulation of coenzyme F420-dependent bicyclic nitroimidazole catabolic process","type":"exact"},{"name":"upregulation of coenzyme F420-dependent nitroimidazole breakdown","type":"exact"},{"name":"upregulation of coenzyme F420-dependent nitroimidazole catabolism","type":"exact"},{"name":"upregulation of coenzyme F420-dependent nitroimidazole reduction","type":"exact"},{"name":"upregulation of coenzyme F420-dependent nitroreductase activity","type":"related"}],"termid":"GO:1900290"}


id: PBO:0070846
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L13a pseudogene 25","termid":"PBO:0070846"}


id: GO:0006789
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of bilirubin monoglucuronide or bilirubin diglucuronide, water-soluble derivatives of bilirubin.","definition_xrefs":["DOI:10.1016/0305-0491(80)90243-6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"porphyrin-containing compound catabolic process","termid":"GO:0006787"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0033013"}],"interesting_parent_ids":["GO:0033013","GO:0008150"],"is_obsolete":false,"name":"bilirubin conjugation","termid":"GO:0006789"}


id: GO:1902305
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of sodium ion transmembrane transport.","definition_xrefs":["GOC:BHF","GOC:mtg_cardiac_conduct_nov11","GOC:rl","GOC:TermGenie","PMID:18591664"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of sodium ion transport","termid":"GO:0002028"},{"relation_name":"is_a","term_name":"regulation of monoatomic cation transmembrane transport","termid":"GO:1904062"},{"relation_name":"regulates","term_name":"sodium ion transmembrane transport","termid":"GO:0035725"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0055085","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"regulation of sodium ion transmembrane transport","synonyms":[{"name":"regulation of sodium ion membrane transport","type":"exact"}],"termid":"GO:1902305"}


id: GO:0140783
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of (M)-viriditoxin, a fungal secondary metabolite with antibacterial activity.","definition_xrefs":["PMID:31045362","PMID:31304040"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyketide biosynthetic process","termid":"GO:0030639"},{"relation_name":"is_a","term_name":"mycotoxin biosynthetic process","termid":"GO:0043386"},{"relation_name":"is_a","term_name":"phenol-containing compound biosynthetic process","termid":"GO:0046189"},{"relation_name":"is_a","term_name":"ether biosynthetic process","termid":"GO:1901503"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0019748"],"is_obsolete":false,"name":"(M)-viriditoxin biosynthetic process","synonyms":[{"name":"(M)-viriditoxin anabolism","type":"exact"},{"name":"(M)-viriditoxin biosynthesis","type":"exact"},{"name":"(M)-viriditoxin formation","type":"exact"},{"name":"(M)-viriditoxin synthesis","type":"exact"},{"name":"viriditoxin anabolism","type":"broad"},{"name":"viriditoxin biosynthesis","type":"broad"},{"name":"viriditoxin formation","type":"broad"},{"name":"viriditoxin synthesis","type":"broad"}],"termid":"GO:0140783"}


id: MOD:00215
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cross-links an L-serine residue to the polymer heparan sulfate by a D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl tetrasaccharide.","definition_xrefs":["PubMed:3472204","RESID:AA0210"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-glycosyl-L-serine","termid":"MOD:00002"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"heparan sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine","synonyms":[{"name":"heparan sulfate D-glucuronosyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine","type":"exact"},{"name":"heparin","type":"exact"},{"name":"heparitin sulfate","type":"exact"},{"name":"poly[alpha-1,4-(2-sulfate D-glucopyranuronosyl)-beta-1,4-(2-sulfamino-2-deoxy-6-sulfate D-glucosyl)]-beta-1,4-D-glucopyranuronosyl-beta-1,3-D-galactosyl-beta-1,3-D-galactosyl-beta-1,4-D-xylosyl-beta-1,3-L-serine","type":"exact"}],"termid":"MOD:00215"}


id: PBO:0048016
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FRMPD3 antisense RNA 1","termid":"PBO:0048016"}


id: PBO:0091382
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"I:g.2343703_2343704insA","termid":"PBO:0091382"}


id: PBO:0055261
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2688","termid":"PBO:0055261"}


id: MONDO:0001655
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"pathologic nystagmus","termid":"MONDO:0004843"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dissociated nystagmus","secondary_identifiers":["ICD10CM:H55.04","icd11.foundation:50035755","MEDGEN:56362","SCTID:9520006","ICD9:379.55","UMLS:C0155380","DOID:13174"],"synonyms":[{"name":"dissociated nystagmus","type":"exact"}],"termid":"MONDO:0001655","xrefs":{"Monarch":{"xref_id":"0001655"}}}


id: PBO:0066545
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulator of G protein signaling 9","termid":"PBO:0066545"}


id: PATO:0001552
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A sensitivity of a process which is lower than normal or average.","definition_xrefs":["PATO:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"sensitivity of a process","termid":"PATO:0001457"},{"relation_name":"is_a","term_name":"decreased process quality","termid":"PATO:0002302"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased sensitivity of a process","synonyms":[{"name":"decreased sensitivity of occurrent","type":"exact"},{"name":"low sensitivity of occurrent","type":"exact"}],"termid":"PATO:0001552"}


id: PBO:0059033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"matrix metallopeptidase 23A (pseudogene)","termid":"PBO:0059033"}


id: FYPO:0003269
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to one or more microtubules does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to microtubule cytoskeleton during vegetative growth","termid":"FYPO:0000934"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001320","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abolished protein localization to microtubule during vegetative growth","synonyms":[{"name":"abolished protein localisation to microtubule during vegetative growth","type":"exact"},{"name":"abolished protein localization to microtubule during mitotic cell cycle","type":"related"},{"name":"protein absent from microtubule","type":"related"},{"name":"protein localization to microtubule abolished","type":"exact"}],"termid":"FYPO:0003269"}


id: PBO:0065319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine protease 42, pseudogene","termid":"PBO:0065319"}


id: MONDO:0014035
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Severe intellectual disability-progressive spastic diplegia syndrome is a rare condition that has been described in a few people with severe intellectual disability. Other signs and symptoms include progressive microcephaly (very small head); ataxia (lack of coordination); spasticity ; and/or skin, hair and mild facial anomalies. It is caused by changes (mutations) in the CTNNB1 gene and it is inherited in an autosomal dominant fashion. Treatment is based on the signs and symptoms present in each person.","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"autosomal dominant non-syndromic intellectual disability","termid":"MONDO:0015802"},{"relation_name":"is_a","term_name":"congenital nervous system disorder","termid":"MONDO:0002320"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"},{"relation_name":"is_a","term_name":"CTNNB1-related neurodevelopmental disorder and/or vitreoretinopathy","termid":"MONDO:0100571"},{"relation_name":"is_a","term_name":"autosomal dominant syndromic intellectual disability","termid":"MONDO:0100601"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0002320"],"is_obsolete":false,"name":"severe intellectual disability-progressive spastic diplegia syndrome","secondary_identifiers":["Orphanet:404473","ICD10CM:G11.4","DOID:0070049","GARD:3505","MEDGEN:767363","UMLS:C3554449","OMIM:615075"],"synonyms":[{"name":"CTNNB1-related intellectual disability","type":"related"},{"name":"MRD19","type":"exact"},{"name":"autosomal dominant intellectual disability 19","type":"exact"},{"name":"autosomal dominant mental retardation 19","type":"exact"},{"name":"autosomal dominant non-syndromic intellectual disability 19","type":"related"},{"name":"intellectual disability, autosomal dominant 19","type":"related"},{"name":"intellectual disability, autosomal dominant type 19","type":"exact"},{"name":"mental retardation, autosomal dominant 19","type":"related"},{"name":"mental retardation, autosomal dominant type 19","type":"exact"},{"name":"neurodevelopmental disorder with spastic diplegia and visual defects","type":"exact"},{"name":"severe intellectual disability-progressive spastic diplegia syndrome","type":"exact"}],"termid":"MONDO:0014035","xrefs":{"Monarch":{"xref_id":"0014035"}}}


id: GO:2000162
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of planar cell polarity pathway involved in cardiac right atrium morphogenesis.","definition_xrefs":["GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of planar cell polarity pathway involved in cardiac right atrium morphogenesis (obsolete GO:2000162)","termid":"GO:2000162"}


id: SO:0001316
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"7-deazaguanosine is a modified guanosine.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_guanosine","termid":"SO:0001276"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"seven_deazaguanosine","synonyms":[{"name":"7-deazaguanosine","type":"related"},{"name":"seven deazaguanosine","type":"exact"}],"termid":"SO:0001316"}


id: SO:0001947
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A kind of histone modification site, whereby the 2nd residue (an arginine), from the start of the H3 protein is mono-methylated.","definition_xrefs":["EBI:nj"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone_methylation_site","termid":"SO:0001701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"H3R2_monomethylation_site","synonyms":[{"name":" H3R2me1","type":"exact"},{"name":"H3R2 monomethylation site","type":"exact"}],"termid":"SO:0001947"}


id: GO:0102582
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: cyanidin 3-O-(6-O-(E)-4-coumaroyl-beta-D-glucoside) + UDP-alpha-D-xylose = cyanidin 3-O-[2''-O-xylosyl) 6''-O-(p-coumaroyl) glucoside + UDP + H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete cyanidin 3-O-p-coumaroylglucoside 2-O''-xylosyltransferase activity (obsolete GO:0102582)","termid":"GO:0102582"}


id: GO:1901366
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of funalenone.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ketone biosynthetic process","termid":"GO:0042181"},{"relation_name":"is_a","term_name":"phenol-containing compound biosynthetic process","termid":"GO:0046189"},{"relation_name":"is_a","term_name":"olefinic compound biosynthetic process","termid":"GO:0120255"},{"relation_name":"is_a","term_name":"funalenone metabolic process","termid":"GO:1901364"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"funalenone biosynthetic process","synonyms":[{"name":"funalenone anabolism","type":"exact"},{"name":"funalenone biosynthesis","type":"exact"},{"name":"funalenone formation","type":"exact"},{"name":"funalenone synthesis","type":"exact"}],"termid":"GO:1901366"}


id: PBO:0117115
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SFSWAP antisense RNA 1","termid":"PBO:0117115"}


id: PBO:0039256
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aldehyde dehydrogenase 5 family member A1","termid":"PBO:0039256"}


id: GO:0032946
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of mononuclear cell proliferation.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mononuclear cell proliferation","termid":"GO:0032944"},{"relation_name":"is_a","term_name":"positive regulation of leukocyte proliferation","termid":"GO:0070665"},{"relation_name":"positively_regulates","term_name":"mononuclear cell proliferation","termid":"GO:0032943"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of mononuclear cell proliferation","synonyms":[{"name":"activation of mononuclear cell proliferation","type":"narrow"},{"name":"positive regulation of PBMC proliferation","type":"narrow"},{"name":"positive regulation of peripheral blood mononuclear cell proliferation","type":"narrow"},{"name":"stimulation of mononuclear cell proliferation","type":"narrow"},{"name":"up regulation of mononuclear cell proliferation","type":"exact"},{"name":"up-regulation of mononuclear cell proliferation","type":"exact"},{"name":"upregulation of mononuclear cell proliferation","type":"exact"}],"termid":"GO:0032946"}


id: GO:0043562
data:
  {"annotated_genes":["SJAG_00781","SJAG_03309","SJAG_00256"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[115968],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031142"},{"annotations":[88207,101750],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1905287"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of inorganic nitrogen.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to nutrient levels","termid":"GO:0031669"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00256":null,"SJAG_00781":null,"SJAG_03309":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to nitrogen levels","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0043562","terms_by_termid":{"GO:0031142":null,"GO:1905287":null}}


id: PBO:0062767
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 52 subfamily U member 1 pseudogene","termid":"PBO:0062767"}


id: MONDO:1010866
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Alpha-mannosidosis that occurs in goat.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-mannosidosis, non-human animal","termid":"MONDO:1010172"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-mannosidosis, goat","secondary_identifiers":["OMIA:000625-9925"],"termid":"MONDO:1010866","xrefs":{"Monarch":{"xref_id":"1010866"}}}


id: GO:0021607
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structure of the accessory nerve is generated and organized. The spinal branch of this motor nerve innervates the trapezius and the sternocleidomastoid muscles. The cranial branch joins the vagus nerve and innervates the same targets as the vagus nerve.","definition_xrefs":["GOC:dph","GO_REF:0000021","ISBN:0838580343","GOC:jid","GOC:cls","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cranial nerve morphogenesis","termid":"GO:0021602"},{"relation_name":"part_of","term_name":"accessory nerve development","termid":"GO:0021565"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"accessory nerve morphogenesis","synonyms":[{"name":"CN XI morphogenesis","type":"related"}],"termid":"GO:0021607"}


id: GO:0071952
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The modification process that results in the conversion of O-phosphoserine charged on a tRNA(Cys) to cysteinyl-tRNA.","definition_xrefs":["PMID:18559341","PMID:17351629","GOC:jsg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"charged-tRNA amino acid modification","termid":"GO:0019988"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006399"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0006399"],"is_obsolete":false,"name":"conversion of O-phosphoseryl-tRNA to cysteinyl-tRNA","termid":"GO:0071952"}


id: PBO:0054076
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1426","termid":"PBO:0054076"}


id: PBO:0054171
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1544","termid":"PBO:0054171"}


id: PBO:0061384
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleophosmin 1 pseudogene 44","termid":"PBO:0061384"}


id: GO:1902533
data:
  {"annotated_genes":["SJAG_02486","SJAG_03903","SJAG_02605","SJAG_00781","SJAG_00845","SJAG_03371","SJAG_00561","SJAG_04910","SJAG_05030","SJAG_00143","SJAG_01837","SJAG_01587","SJAG_03705","SJAG_00027","SJAG_06621","SJAG_03048","SJAG_04496","SJAG_03936","SJAG_04551","SJAG_00457","SJAG_02183","SJAG_02135","SJAG_03453","SJAG_02424","SJAG_06622","SJAG_04259","SJAG_06592","SJAG_02231","SJAG_05184","SJAG_06588","SJAG_04666","SJAG_00209","SJAG_03089","SJAG_00318","SJAG_01978","SJAG_01181","SJAG_00610","SJAG_01805","SJAG_03828","SJAG_00424","SJAG_04776","SJAG_01199","SJAG_03969","SJAG_03405","SJAG_03907","SJAG_01150","SJAG_01787","SJAG_00082","SJAG_02945"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[111363,102506],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0050850"},{"annotations":[91130,88442,118289,103207,92782,89799],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903139"},{"annotations":[114169],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905326"},{"annotations":[117060],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090267"},{"annotations":[95623,109322,117754,109317,112204,109319,118667,109321,109323,109320,112866,109318],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1900745"},{"annotations":[104066,88501,115007,115970,91211],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0062038"},{"annotations":[94173,87893,110905,90364,102746],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031031"},{"annotations":[78738],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2000640"},{"annotations":[73427,69682],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032008"},{"annotations":[110921,113244,74423,72925,76649,77164,94683,88669,96459,75811,76259],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904263"},{"annotations":[98106,91557,107367],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904515"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of intracellular signal transduction.","definition_xrefs":["GOC:BHF","GOC:dph","GOC:tb","GOC:TermGenie","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of signal transduction","termid":"GO:0009967"},{"relation_name":"is_a","term_name":"regulation of intracellular signal transduction","termid":"GO:1902531"},{"relation_name":"positively_regulates","term_name":"intracellular signal transduction","termid":"GO:0035556"}],"gene_count":49,"genes_by_uniquename":{"SJAG_00027":null,"SJAG_00082":null,"SJAG_00143":null,"SJAG_00209":null,"SJAG_00318":null,"SJAG_00424":null,"SJAG_00457":null,"SJAG_00561":null,"SJAG_00610":null,"SJAG_00781":null,"SJAG_00845":null,"SJAG_01150":null,"SJAG_01181":null,"SJAG_01199":null,"SJAG_01587":null,"SJAG_01787":null,"SJAG_01805":null,"SJAG_01837":null,"SJAG_01978":null,"SJAG_02135":null,"SJAG_02183":null,"SJAG_02231":null,"SJAG_02424":null,"SJAG_02486":null,"SJAG_02605":null,"SJAG_02945":null,"SJAG_03048":null,"SJAG_03089":null,"SJAG_03371":null,"SJAG_03405":null,"SJAG_03453":null,"SJAG_03705":null,"SJAG_03828":null,"SJAG_03903":null,"SJAG_03907":null,"SJAG_03936":null,"SJAG_03969":null,"SJAG_04259":null,"SJAG_04496":null,"SJAG_04551":null,"SJAG_04666":null,"SJAG_04776":null,"SJAG_04910":null,"SJAG_05030":null,"SJAG_05184":null,"SJAG_06588":null,"SJAG_06592":null,"SJAG_06621":null,"SJAG_06622":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of intracellular signal transduction","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0010740"],"synonyms":[{"name":"activation of intracellular signal transduction","type":"narrow"},{"name":"activation of intracellular signal transduction pathway","type":"narrow"},{"name":"activation of intracellular signaling cascade","type":"narrow"},{"name":"activation of intracellular signaling chain","type":"narrow"},{"name":"activation of intracellular signaling pathway","type":"related"},{"name":"activation of signal transduction via intracellular signaling cascade","type":"related"},{"name":"activation of signal transmission via intracellular cascade","type":"narrow"},{"name":"positive regulation of intracellular protein kinase cascade","type":"narrow"},{"name":"positive regulation of intracellular signal transduction pathway","type":"narrow"},{"name":"positive regulation of intracellular signaling cascade","type":"related"},{"name":"positive regulation of intracellular signaling chain","type":"exact"},{"name":"positive regulation of intracellular signaling pathway","type":"related"},{"name":"positive regulation of signal transduction via intracellular signaling cascade","type":"related"},{"name":"positive regulation of signal transmission via intracellular cascade","type":"narrow"},{"name":"up regulation of intracellular signal transduction","type":"exact"},{"name":"up regulation of intracellular signal transduction pathway","type":"narrow"},{"name":"up regulation of intracellular signaling cascade","type":"related"},{"name":"up regulation of intracellular signaling chain","type":"exact"},{"name":"up regulation of intracellular signaling pathway","type":"related"},{"name":"up regulation of signal transduction via intracellular signaling cascade","type":"related"},{"name":"up regulation of signal transmission via intracellular cascade","type":"narrow"},{"name":"up-regulation of intracellular signal transduction","type":"exact"},{"name":"up-regulation of intracellular signal transduction pathway","type":"narrow"},{"name":"up-regulation of intracellular signaling cascade","type":"related"},{"name":"up-regulation of intracellular signaling chain","type":"exact"},{"name":"up-regulation of intracellular signaling pathway","type":"related"},{"name":"up-regulation of signal transduction via intracellular signaling cascade","type":"related"},{"name":"up-regulation of signal transmission via intracellular cascade","type":"narrow"},{"name":"upregulation of intracellular signal transduction","type":"exact"},{"name":"upregulation of intracellular signal transduction pathway","type":"narrow"},{"name":"upregulation of intracellular signaling cascade","type":"related"},{"name":"upregulation of intracellular signaling chain","type":"exact"},{"name":"upregulation of intracellular signaling pathway","type":"related"},{"name":"upregulation of signal transduction via intracellular signaling cascade","type":"related"},{"name":"upregulation of signal transmission via intracellular cascade","type":"narrow"}],"termid":"GO:1902533","terms_by_termid":{"GO:0031031":null,"GO:0032008":null,"GO:0050850":null,"GO:0062038":null,"GO:0090267":null,"GO:1900745":null,"GO:1903139":null,"GO:1904263":null,"GO:1904515":null,"GO:1905326":null,"GO:2000640":null}}


id: GO:0009196
data:
  {"annotated_genes":["SJAG_04665","SJAG_04657","SJAG_00885","SJAG_02874"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92802,107626,95851],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006240"},{"annotations":[71417],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006233"},{"annotations":[71416],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006227"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving pyrimidine deoxynucleoside diphosphate, a compound consisting of a pyrimidine base linked to a deoxyribose sugar esterified with diphosphate on the sugar.","definition_xrefs":["ISBN:0198506732","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleoside diphosphate metabolic process","termid":"GO:0009138"},{"relation_name":"is_a","term_name":"deoxyribonucleoside diphosphate metabolic process","termid":"GO:0009186"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00885":null,"SJAG_02874":null,"SJAG_04657":null,"SJAG_04665":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0055086"],"is_obsolete":false,"name":"pyrimidine deoxyribonucleoside diphosphate metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"pyrimidine deoxyribonucleoside diphosphate metabolism","type":"exact"}],"termid":"GO:0009196","terms_by_termid":{"GO:0006227":null,"GO:0006233":null,"GO:0006240":null}}


id: PBO:0002003
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.2.2.-","termid":"PBO:0002003"}


id: GO:0034577
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: N-isopropylacetanilide + 1/2 O2 = acetanilide + acetone.","definition_xrefs":["UM-BBD_reactionID:r0914"],"gene_count":0,"genotype_count":0,"name":"obsolete N-isopropylacetaniline monooxygenase activity (obsolete GO:0034577)","termid":"GO:0034577"}


id: PBO:0035943
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cytoplasmic_microtubule_nucleation_during_mitotic_interphase","termid":"PBO:0035943"}


id: FYPO:0003523
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of hercynylselenocysteine measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of substance in cell","termid":"FYPO:0000990"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased cellular hercynylselenocysteine level","synonyms":[{"name":"increased hercynylselenocysteine level","type":"exact"}],"termid":"FYPO:0003523"}


id: FYPO:0006220
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cell septum does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to cell division site","termid":"FYPO:0001880"},{"relation_name":"is_a","term_name":"abnormal protein localization to septum","termid":"FYPO:0002718"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"abolished protein localization to septum","synonyms":[{"name":"abolished protein localisation to septum","type":"exact"},{"name":"abolished protein localization to septum during mitotic cell cycle","type":"related"},{"name":"protein absent from septum","type":"related"},{"name":"protein localization to septum abolished","type":"exact"},{"name":"protein localization to septum abolished during vegetative growth","type":"exact"}],"termid":"FYPO:0006220"}


id: MONDO:0012670
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal recessive nonsyndromic deafness in which the cause of the disease is a mutation in the LRTOMT gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hearing loss, autosomal recessive","termid":"MONDO:0019588"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019497"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0019497","MONDO:0006025"],"is_obsolete":false,"name":"autosomal recessive nonsyndromic hearing loss 63","secondary_identifiers":["OMIM:611451","MESH:C566951","UMLS:C1969621","GARD:22627","MEDGEN:409872","DOID:0110515"],"synonyms":[{"name":"DFNB63","type":"narrow"},{"name":"LRTOMT autosomal recessive nonsyndromic deafness","type":"narrow"},{"name":"autosomal recessive deafness 63","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness 63","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness caused by mutation in LRTOMT","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness type 63","type":"narrow"},{"name":"autosomal recessive nonsyndromic hearing loss 63","type":"exact"},{"name":"deafness, autosomal recessive 63","type":"narrow"},{"name":"deafness, autosomal recessive type 63","type":"narrow"}],"termid":"MONDO:0012670","xrefs":{"Monarch":{"xref_id":"0012670"}}}


id: MONDO:0003387
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A morphologic variant of urethral adenocarcinoma characterized by the presence of tubulocystic or papillary structures lined with clear cuboidal or hobnail cells.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"urethra adenocarcinoma","termid":"MONDO:0003200"},{"relation_name":"is_a","term_name":"clear cell adenocarcinoma","termid":"MONDO:0005004"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"urethra clear cell adenocarcinoma","secondary_identifiers":["MEDGEN:277846","NCIT:C6172","DOID:5307","UMLS:C1336886"],"synonyms":[{"name":"clear cell adenocarcinoma of the urethra","type":"exact"},{"name":"clear cell adenocarcinoma of urethra","type":"exact"},{"name":"urethra clear cell adenocarcinoma","type":"exact"},{"name":"urethral clear cell adenocarcinoma","type":"exact"}],"termid":"MONDO:0003387","xrefs":{"Monarch":{"xref_id":"0003387"}}}


id: PBO:0017570
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pseudouridine-5'-phosphatase (predicted)","termid":"PBO:0017570"}


id: MONDO:0044742
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"epidermolytic ichthyosis","termid":"MONDO:0007239"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0006025"],"is_obsolete":false,"name":"autosomal recessive epidermolytic ichthyosis","secondary_identifiers":["MEDGEN:1725198","NANDO:1200612","GARD:22074","icd11.foundation:244597687","NANDO:2200989","Orphanet:512103","UMLS:C5437635"],"synonyms":[{"name":"AREI","type":"exact"}],"termid":"MONDO:0044742","xrefs":{"Monarch":{"xref_id":"0044742"}}}


id: PBO:0111935
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Smaug family","termid":"PBO:0111935"}


id: GO:0038188
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A G protein-coupled receptor signaling pathway initiated by cholecystokinin binding to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:jc","PMID:11181948"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor signaling pathway","termid":"GO:0007186"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"cholecystokinin signaling pathway","secondary_identifiers":["Wikipedia:Cholecystokinin"],"synonyms":[{"name":"CCK signaling","type":"exact"},{"name":"cholecystokinin receptor signaling pathway","type":"related"}],"termid":"GO:0038188"}


id: MONDO:0010308
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An X-linked condition caused by mutation(s) in the GATA1 gene, encoding erythroid transcription factor. It is characterized by thrombocytopenia, as well as abnormal platelet function and morphology. Dyserythropoietic anemia of variable severity may also be present.","definition_xrefs":["NCIT:C136653"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited thrombocytopenia","termid":"MONDO:0100241"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"thrombocytopenia, X-linked, with or without dyserythropoietic anemia","secondary_identifiers":["UMLS:C3550789","OMIM:300367","MEDGEN:763703"],"synonyms":[{"name":"X-linked thrombocytopenia, with or without dyserythropoietic Anaemia","type":"exact"},{"name":"X-linked thrombocytopenia, with or without dyserythropoietic Anemia","type":"exact"},{"name":"XLTDA","type":"related"},{"name":"thrombocytopenia, X-linked, with or without dyserythropoietic anemia","type":"exact"},{"name":"thrombocytopenia, X-linked, with or without dyserythropoietic anemia, X-linked recessive","type":"exact"}],"termid":"MONDO:0010308","xrefs":{"Monarch":{"xref_id":"0010308"}}}


id: MONDO:0009194
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare progressive disease that begins as a primary Epstein-Barr virus (EBV) infection. In this type of infection, the body makes too many lymphocytes (lymphoproliferative disease) for a period of more than 6 months duration. Lymphocytes are a type of white blood cell. They are an importantpart ofthe immune system because they help fight off diseases and protect the body from infection byproducing antibodies against viruses or bacteria and regulating immune responses. In CAEBV there are many antibodies againstEBV in the blood.Most people (about 95% of adults) get infected with EBV at some point in their lives, and never have any health problems.However, EBV can cause infectiousmononucleosis and other illnesses, and has a role in various autoimmune diseases and some types of cancer. While most infections occurring during childhood do not cause any symptoms,EBV infection in adolescents or young adults can often result in mononucleosis.After an EBV infection, the virus becomes latent (inactive) in the body, and, in some cases, the virus may reactivate. This does not always cause symptoms, but people with weakened immune systems are more likely to develop symptoms if EBV reactivates.In rare cases, people infected with EBV develop chronic active EBV virus infection(CAEBV) without apparent immunodeficiency. Most cases of CAEBV have been reported from Japan. These patientshave some of the complications found in otherwise-healthy patients with acute EBV infection, but unlike healthy patients, these complications persist and progress. Symptoms of CAEBV most often include fever, liverdysfunction, an enlarged spleen (splenomegaly), swollen lymph nodes (lymphadenopathy), and low numbers of platelets (thrombocytopenia) as well as high EBV-DNA load in the blood. Other features that appear in more than 10% of patients include enlarged liver (hepatomegaly), anemia, hypersensitivity to mosquito bites, rash, oral ulcers, hemophagocytic syndrome, coronary artery aneurysms, liver failure, lymphoma, and interstitial pneumonia. While the cause is yet unknown, researchers have identified defects in T cells or natural killer (NK) cells activity which results in a decreased defense against the EBV in people with CAEBV.It is important to note that the fatigue and malaise from acute infectious mononucleosis (IM)varies from mild symptoms lasting only a few weeks, to more severe symptoms of fatigue that can persist for several months, or even up to a year or more in up to 10% of patients (which may be considered a less severe form of chronicEBV infection). The persistence of fatigue that is seen in some patients after acute IM would lead some people to believe that EBV may also cause cases of chronic fatigue syndrome (CFS). However, no convincing link has been found between EBV and CFS.Hematopoietic stemcell transplantation has shown promise in the treatment of CAEBV.","definition_xrefs":["GARD:0009534"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"viral infectious disease","termid":"MONDO:0005108"},{"relation_name":"is_a","term_name":"post-viral disorder","termid":"MONDO:0021674"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunodeficiency 32B","secondary_identifiers":["NANDO:2200808","UMLS:C4016741","Orphanet:2566","OMIM:226990","OMIM:614894","DOID:0111985","GARD:9534","MEDGEN:865178"],"synonyms":[{"name":"CAEBV infection","type":"related"},{"name":"CAEBV syndrome","type":"exact"},{"name":"CEBV","type":"related"},{"name":"Epstein-Barr VIRUS, susceptibility to chronic infection by","type":"related"},{"name":"IMD32B","type":"exact"},{"name":"IRF8 deficiency, autosomal recessive","type":"exact"},{"name":"chronic EBV infection syndrome","type":"exact"},{"name":"chronic Epstein-Barr virus infection syndrome","type":"exact"},{"name":"chronic active Epstein-Barr disease","type":"related"},{"name":"chronic active Epstein-Barr virus infection","type":"related"},{"name":"immunodeficiency 32B","type":"exact"},{"name":"immunodeficiency 32B, monocyte and dendritic cell deficiency, autosomal recessive","type":"exact"},{"name":"immunodeficiency 32B, monocyte, Dendritic cell, and natural Killer cell deficiency, autosomal recessive","type":"exact"},{"name":"monocyte and dendritic cell deficiency, autosomal recessive","type":"exact"}],"termid":"MONDO:0009194","xrefs":{"Monarch":{"xref_id":"0009194"}}}


id: MONDO:0018085
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Umbilical cord ulceration-intestinal atresia syndrome is characterized by congenital intestinal atresia, umbilical cord ulceration and severe intrauterine hemorrhage.","definition_xrefs":["Orphanet:3405"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"digestive system disorder","termid":"MONDO:0004335"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"umbilical cord ulceration-intestinal atresia syndrome","secondary_identifiers":["UMLS:C2931371","MEDGEN:419062","MESH:C536938","GARD:5403"],"synonyms":[{"name":"umbilical cord ulcer with intestinal atresia","type":"related"},{"name":"umbilical cord ulceration and intestinal atresia","type":"related"},{"name":"umbilical ulceration and intestinal atresia","type":"related"}],"termid":"MONDO:0018085","xrefs":{"Monarch":{"xref_id":"0018085"}}}


id: FYPO:0008064
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A biological process phenotype in which the observed mating efficiency, as determined by counting zygotes, asci, and sometimes spores, is lower than normal after phosphate removal.","definition_xrefs":["PMID:36779416"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased mating efficiency","termid":"FYPO:0000708"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"decreased mating efficiency during phosphate starvation","termid":"FYPO:0008064"}


id: PBO:0061978
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily AS member 1 pseudogene","termid":"PBO:0061978"}


id: PBO:0082627
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of conserved R2TP complex (Rvb1-Rvb2-Tah1-Pih1); R2TP complex interacts with Hsp90 (Hsp82p and Hsc82p) to mediate assembly of large protein complexes such as box C/D snoRNPs and RNA polymerase II; contains a single TPR domain with at least two TPR motifs; plays a role in determining prion variants","termid":"PBO:0082627"}


id: PBO:0007419
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FAD-dependent amino acid oxidase involved in late endosome to Golgi transport (predicted)","termid":"PBO:0007419"}


id: PBO:0040092
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arylsulfatase L","termid":"PBO:0040092"}


id: FYPO:0006931
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to butylated hydroxytoluene (dibutylhydroxytoluene; BHT). Cells stop growing (and may die) at a concentration of butylated hydroxytoluene that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0000139","FYPO:0001985","FYPO:0002683","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to butylated hydroxytoluene","synonyms":[{"name":"hypersensitive to butylated hydroxytoluene","type":"exact"},{"name":"sensitive to 2,6-di-tert-butyl-4-methylphenol","type":"exact"},{"name":"sensitive to BHT","type":"exact"},{"name":"sensitive to butylated hydroxytoluene during mitotic cell cycle","type":"related"},{"name":"sensitive to butylated hydroxytoluene during vegetative growth","type":"exact"},{"name":"sensitive to dibutylhydroxytoluene","type":"exact"}],"termid":"FYPO:0006931"}


id: GO:0160135
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A phospholipase C-activating receptor G protein-coupled receptor signaling pathway initiated by endothelin binding to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["PMID:35284927"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipase C-activating G protein-coupled receptor signaling pathway","termid":"GO:0007200"},{"relation_name":"is_a","term_name":"endothelin receptor signaling pathway","termid":"GO:0086100"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"phospholipase C-activating endothelin receptor signaling pathway","termid":"GO:0160135"}


id: PBO:0030344
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_binding_during_cellular_response_to_hypoxia","termid":"PBO:0030344"}


id: PBO:0042611
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDRT15 pseudogene 11","termid":"PBO:0042611"}


id: PBO:0065948
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAD9 checkpoint clamp component B","termid":"PBO:0065948"}


id: GO:0006790
data:
  {"annotated_genes":["SJAG_03671","SJAG_03290","SJAG_01474","SJAG_01162","SJAG_04288","SJAG_03659","SJAG_02006","SJAG_00832","SJAG_01139","SJAG_04858","SJAG_04459","SJAG_04726","SJAG_03813","SJAG_03881","SJAG_03614","SJAG_01351","SJAG_00903","SJAG_03316","SJAG_01995","SJAG_03553","SJAG_01466","SJAG_00866","SJAG_03731","SJAG_01612","SJAG_01702","SJAG_05027","SJAG_01192","SJAG_00395","SJAG_02290","SJAG_01524","SJAG_01880","SJAG_02380","SJAG_03310","SJAG_00902","SJAG_05181","SJAG_04895","SJAG_04007","SJAG_04282","SJAG_02247","SJAG_00582","SJAG_01742","SJAG_02972","SJAG_04042","SJAG_04953","SJAG_02421","SJAG_02689","SJAG_02420","SJAG_04305","SJAG_01402","SJAG_01404","SJAG_04866","SJAG_01970","SJAG_03556","SJAG_02158","SJAG_04499","SJAG_04067","SJAG_01693","SJAG_00381","SJAG_03102","SJAG_01989","SJAG_03313","SJAG_03715","SJAG_00084","SJAG_03198","SJAG_04060","SJAG_04627","SJAG_00673","SJAG_03856","SJAG_03909","SJAG_01187","SJAG_02769","SJAG_03152","SJAG_02406","SJAG_03475","SJAG_00827","SJAG_04425","SJAG_02741","SJAG_03362","SJAG_00947","SJAG_01935","SJAG_00881","SJAG_03538","SJAG_03494","SJAG_02599","SJAG_00309","SJAG_05277","SJAG_01271","SJAG_03471","SJAG_03349","SJAG_03064","SJAG_00427","SJAG_02293","SJAG_03712","SJAG_04865","SJAG_01786","SJAG_02047","SJAG_00988","SJAG_03141"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[111474,68800,106366,65634],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071266"},{"annotations":[98731],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006085"},{"annotations":[91802,68914],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019427"},{"annotations":[117432],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990181"},{"annotations":[80318,114729,116143],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006084"},{"annotations":[97173,109089],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006637"},{"annotations":[79714,76740],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009102"},{"annotations":[80323,71529,89737,72005,78955],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015937"},{"annotations":[78417],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015938"},{"annotations":[59327],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015936"},{"annotations":[110887],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019344"},{"annotations":[60430,66482,76526],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006535"},{"annotations":[118564,93673,103960,98881],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006534"},{"annotations":[103990,111920],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052699"},{"annotations":[79146,77699,108810,57802],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006750"},{"annotations":[102619,78937,74046,77005],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006751"},{"annotations":[99632,77499,103157,79440],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006749"},{"annotations":[79415,74926],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0050667"},{"annotations":[77494,74711,80522,115287],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019287"},{"annotations":[114317],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019450"},{"annotations":[110888],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071269"},{"annotations":[101035],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019280"},{"annotations":[78236,58783,77283,78686,79596,80476],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019509"},{"annotations":[98882],"is_not":false,"rel_names":["part_of","is_a"],"summary":null,"term":"GO:0019284"},{"annotations":[97520,75513,98223],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009107"},{"annotations":[107843],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035338"},{"annotations":[77635,79213],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035336"},{"annotations":[66304],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001295"},{"annotations":[112354,72270,71459,79412,74923],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009086"},{"annotations":[111049,113090,103755],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006555"},{"annotations":[111755,115863],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:2001211"},{"annotations":[114065,89399],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0090180"},{"annotations":[73143,75005,73773,87783,79428,88213],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006086"},{"annotations":[75489],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:001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chemical reactions and pathways involving the nonmetallic element sulfur or compounds that contain sulfur, such as the amino acids methionine and cysteine or the tripeptide glutathione.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic 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id: MONDO:1010316
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hypophosphatasia that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental defect during embryogenesis, non-human animal","termid":"MONDO:1011310"},{"relation_name":"is_a","term_name":"inborn errors of metabolism, non-human animal","termid":"MONDO:1012979"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypophosphatasia, non-human animal","secondary_identifiers":["OMIA:002162"],"termid":"MONDO:1010316","xrefs":{"Monarch":{"xref_id":"1010316"}}}


id: GO:0052912
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + guanine(748) in 23S rRNA = N(1)-methylguanine(748) in 23S rRNA + S-adenosyl-L-homocysteine.","definition_xrefs":["EC:2.1.1.188"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA (guanine-N1-)-methyltransferase activity","termid":"GO:0008989"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0140098","GO:0016741","GO:0003674","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"23S rRNA (guanine(748)-N(1))-methyltransferase activity","secondary_identifiers":["RHEA:42904","MetaCyc:RXN-11599"],"synonyms":[{"name":"23S rRNA m(1)G(748) methyltransferase activity","type":"broad"}],"termid":"GO:0052912"}


id: PBO:0076572
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBC1 domain family member 3 pseudogene 1","termid":"PBO:0076572"}


id: PBO:0027745
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_nucleus_during_nitrogen_starvation","termid":"PBO:0027745"}


id: MONDO:0016440
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign, slow-growing tumor arising from the soft tissues usually in the mid-thoracic region of the elderly. It is characterized by the presence of paucicellular collagenous tissue, adipocytes and a predominance of large coarse elastic fibers arranged in globules.","definition_xrefs":["NCIT:C4245"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fibroblastic neoplasm","termid":"MONDO:0006209"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elastofibroma dorsi","secondary_identifiers":["GARD:20580","UMLS:C0334460","ICDO:8820/0","MEDGEN:87247","Orphanet:228243"],"synonyms":[{"name":"Elastofibroma","type":"exact"}],"termid":"MONDO:0016440","xrefs":{"Monarch":{"xref_id":"0016440"}}}


id: FYPO:0000651
data:
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id: GO:0005198
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id: MONDO:0005289
data:
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id: MOD:00663
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id: GO:0046351
data:
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id: MONDO:0008255
data:
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id: GO:0016644
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which a CH-NH2 group acts as a hydrogen or electron donor and reduces an acceptor other than a cytochrome, disulfide, an iron-sulfur protein, NAD, NADP or oxygen.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete oxidoreductase activity, acting on the CH-NH2 group of donors, other acceptors (obsolete GO:0016644)","synonyms":[{"name":"oxidoreductase activity, acting on the CH-NH2 group of donors, other acceptors","type":"exact"}],"termid":"GO:0016644"}


id: PBO:0090171
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id: MONDO:0022037
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Malignant lymphoma characterized by the presence of immunoblasts with uniformly round-to-oval nuclei, one or more prominent nucleoli, and abundant cytoplasm. This class may be subdivided into plasmacytoid and clear-cell types based on cytoplasmic characteristics. A third category, pleomorphous, may be analogous to some of the peripheral T-cell lymphomas (LYMPHOMA, T-CELL, PERIPHERAL) recorded in both the United States and Japan.","definition_xrefs":["MESH:D016400"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-Hodgkin lymphoma","termid":"MONDO:0018908"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"large-cell immunoblastic lymphoma","secondary_identifiers":["GARD:8219","MEDGEN:86955","UMLS:C0079746"],"synonyms":[{"name":"Diffuse Immunoblastic Lymphosarcoma","type":"related"},{"name":"Diffuse Immunoblastic Lymphosarcomas","type":"related"},{"name":"Diffuse non-Hodgkin lymphoma, immunoblastic","type":"related"},{"name":"Diffuse non-Hodgkin's immunoblastic (diffuse) lymphoma","type":"related"},{"name":"Diffuse non-Hodgkin's lymphoma, immunoblastic","type":"related"},{"name":"Diffuse non-Hodgkin's lymphoma, immunoblastic (clinical)","type":"related"},{"name":"IMMUNOBLASTIC LARGE LYMPHOMA","type":"related"},{"name":"Immunoblastic Large Cell Lymphoma","type":"related"},{"name":"Immunoblastic Large-Cell Lymphoma","type":"related"},{"name":"Immunoblastic Large-Cell Lymphomas","type":"related"},{"name":"Immunoblastic Lymphoma","type":"related"},{"name":"Immunoblastic Lymphoma, Large-Cell","type":"related"},{"name":"Immunoblastic Lymphomas, Large-Cell","type":"related"},{"name":"Immunoblastic Lymphosarcoma, Diffuse","type":"related"},{"name":"Immunoblastic Lymphosarcomas, Diffuse","type":"related"},{"name":"Immunoblastic Sarcoma","type":"related"},{"name":"Immunoblastic Sarcomas","type":"related"},{"name":"Immunoblastic malignant lymphoma - large cell","type":"related"},{"name":"Immunoblastoma","type":"related"},{"name":"Immunoblastomas","type":"related"},{"name":"LARGE IMMUNOBLASTIC LYMPHOMA","type":"related"},{"name":"LYMPHOMA IMMUNOBLASTIC LARGE","type":"related"},{"name":"LYMPHOMA LARGE IMMUNOBLASTIC","type":"related"},{"name":"Large Cell Immunoblastic Lymphoma","type":"related"},{"name":"Large cell immunoblastic lymphoma","type":"related"},{"name":"Large-Cell Immunoblastic Lymphoma","type":"related"},{"name":"Large-Cell Immunoblastic Lymphomas","type":"related"},{"name":"Large-Cell Lymphoma, Immunoblastic","type":"related"},{"name":"Large-Cell Lymphomas, Immunoblastic","type":"related"},{"name":"Lymphoma, Immunoblastic Large-Cell","type":"related"},{"name":"Lymphoma, Immunoblastic, Large Cell","type":"related"},{"name":"Lymphoma, Immunoblastic, Large-Cell","type":"related"},{"name":"Lymphoma, Large Cell, Immunoblastic","type":"related"},{"name":"Lymphoma, Large-Cell Immunoblastic","type":"related"},{"name":"Lymphoma, Large-Cell, Immunoblastic","type":"related"},{"name":"Lymphoma, immunoblastic, high grade","type":"related"},{"name":"Lymphomas, Immunoblastic Large-Cell","type":"related"},{"name":"Lymphomas, Large-Cell Immunoblastic","type":"related"},{"name":"Lymphosarcoma, Diffuse Immunoblastic","type":"related"},{"name":"Lymphosarcomas, Diffuse Immunoblastic","type":"related"},{"name":"Malignant lymphoma - immunoblastic","type":"related"},{"name":"Sarcoma, Immunoblastic","type":"related"},{"name":"Sarcomas, Immunoblastic","type":"related"}],"termid":"MONDO:0022037","xrefs":{"Monarch":{"xref_id":"0022037"}}}


id: PBO:0082476
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cAMP-dependent protein kinase catalytic subunit; role in nutrient-stimulated growth via Ras-cAMP signaling; inhibited by regulatory subunit Bcy1p in cAMPs absence; phosphorylates and inhibits Whi3p to promote G1/S phase passage; phosphorylates Nej1p to regulate nonhomologous end joining (NHEJ); impairs mitochondrial import of pre-Tom40p via phosphorylation under non-respiratory conditions; partially redundant with Tpk2p and Tpk3p; human homolog PRKACB regulates NHEJ via NHEJ1 phosphorylation","termid":"PBO:0082476"}


id: PBO:0090763
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial copper chaperone for cytochrome c oxidase Sco1","termid":"PBO:0090763"}


id: GO:0033277
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A cell cycle in which mitosis is begun and progresses normally through the end of anaphase, but not completed, resulting in a cell with increased ploidy.","definition_xrefs":["GOC:mah","PMID:9573008"],"gene_count":0,"genotype_count":0,"name":"obsolete abortive mitotic cell cycle (obsolete GO:0033277)","synonyms":[{"name":"abortive mitosis","type":"related"}],"termid":"GO:0033277"}


id: PBO:0041913
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cerebellin 1 precursor","termid":"PBO:0041913"}


id: GO:0006522
data:
  {"annotated_genes":["SJAG_04145"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[111615],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042852"},{"annotations":[68965],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042853"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving alanine, 2-aminopropanoic acid.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-amino acid metabolic process","termid":"GO:1901605"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04145":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006520","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"alanine metabolic process","references_by_uniquename":{"GO_REF:0000041":null,"GO_REF:0000107":null},"synonyms":[{"name":"alanine metabolism","type":"exact"}],"termid":"GO:0006522","terms_by_termid":{"GO:0042852":null,"GO:0042853":null}}


id: PBO:0051906
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"integrin subunit alpha E","termid":"PBO:0051906"}


id: PR:O13804
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC17H9.07 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13804"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C17H9.07 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17H9.07","synonyms":[{"name":"Spom972h-SPAC17H9.07","type":"exact"}],"termid":"PR:O13804"}


id: PBO:0028148
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_box_C/D_snoRNA_3'-end_processing","termid":"PBO:0028148"}


id: GO:0047415
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N(2)-benzoyl-D-arginine-4-nitroanilide + H2O = 4-nitroaniline + N(2)-benzoyl-D-arginine + H+.","definition_xrefs":["EC:3.5.1.72","RHEA:14421"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016810"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0016810","GO:0003824"],"is_obsolete":false,"name":"D-benzoylarginine-4-nitroanilide amidase activity","secondary_identifiers":["KEGG_REACTION:R04113","MetaCyc:3.5.1.72-RXN"],"synonyms":[{"name":"D-BAPA-ase activity","type":"related"},{"name":"N-benzoyl-D-arginine-4-nitroanilide amidohydrolase activity","type":"related"},{"name":"benzoyl-D-arginine arylamidase activity","type":"related"}],"termid":"GO:0047415"}


id: GO:0110011
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the assembly, disassembly or arrangement of constituent parts of the basement membrane.","definition_xrefs":["PMID:27404358","GOC:ha"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of extracellular matrix organization","termid":"GO:1903053"},{"relation_name":"regulates","term_name":"basement membrane organization","termid":"GO:0071711"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of basement membrane organization","termid":"GO:0110011"}


id: PBO:0119294
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"farnesyltranstransferase subunit Erg20","termid":"PBO:0119294"}


id: GO:0042408
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the conversion of geranyl diphosphate (GPP) into the acyclic monoterpenes beta-myrcene, (E)-beta-ocimene, and other minor cyclic monoterpenes.","definition_xrefs":["PMID:10700382","GOC:cr"],"gene_count":0,"genotype_count":0,"name":"obsolete myrcene/(E)-beta-ocimene synthase activity (obsolete GO:0042408)","synonyms":[{"name":"myrcene/(E)-beta-ocimene synthase activity","type":"exact"},{"name":"myrcene/ocimene synthase activity","type":"exact"}],"termid":"GO:0042408"}


id: PBO:0034329
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_prototype","termid":"PBO:0034329"}


id: PBO:0062126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily D member 6","termid":"PBO:0062126"}


id: PBO:0004225
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell wall organization protein (predicted)","termid":"PBO:0004225"}


id: PBO:0067658
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 835, pseudogene","termid":"PBO:0067658"}


id: MOD:01230
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Isotopic label -","definition_xrefs":["PubMed:15602776","Unimod:365#K"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, light form","termid":"MOD:00790"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, light form - site K","synonyms":[{"name":"Bruker Daltonics SERVA-ICPL(TM) quantification chemistry, light form","type":"related"},{"name":"ICPL","type":"related"}],"termid":"MOD:01230"}


id: MONDO:0006321
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An adenoma of the adrenal cortex characterized by the absence of a hormonal syndrome or symptoms suggestive of adrenal disease.","definition_xrefs":["NCIT:C48458"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adrenal cortex adenoma","termid":"MONDO:0003924"},{"relation_name":"is_a","term_name":"non-functioning endocrine neoplasm","termid":"MONDO:0021119"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-functioning adrenal cortex adenoma","secondary_identifiers":["MEDGEN:313501","EFO:1000399","UMLS:C1709240"],"synonyms":[{"name":"adrenal cortex non-functioning endocrine neoplasm","type":"exact"},{"name":"adrenal cortical incidentaloma","type":"exact"},{"name":"non-functioning adrenal cortex adenoma","type":"exact"},{"name":"non-functioning adrenal cortical adenoma","type":"exact"},{"name":"non-functioning endocrine neoplasm of adrenal cortex","type":"exact"},{"name":"nonfunctional adrenal cortex adenoma","type":"exact"}],"termid":"MONDO:0006321","xrefs":{"Monarch":{"xref_id":"0006321"}}}


id: PBO:0030028
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_adenylyl_cyclase_activity","termid":"PBO:0030028"}


id: MOD:01395
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively results from forming an adduct between an isoleucine residue, a threonine residue and the quinaldate compound 2-carboxy-4-(1-hydroxyethyl)--7,8-dihydroquinolin-8-ol.","definition_xrefs":["RESID:AA0472","PubMed:11320328"],"direct_ancestors":[{"relation_name":"is_a","term_name":"quinaldate modified residue","termid":"MOD:01424"},{"relation_name":"is_a","term_name":"crosslinked L-isoleucine residue","termid":"MOD:02049"},{"relation_name":"is_a","term_name":"crosslinked L-threonine residue","termid":"MOD:02056"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4-(1-hydroxyethyl)-7-isoleucino-2-(threonin-O3-ylcarbonyl)-7,8-dihydroquinolin-8-ol","synonyms":[{"name":"(7R,8S)-7-[(1S,2S)-1-carboxy-2-methylbutyl]amino-2-([(1S,2R)-1-amino-1-carboxypropan-2-yl]oxy)carbonyl-8-hydroxy-4-[(1S)-1-hydroxyethyl]-7,8-dihydroquinoline","type":"exact"},{"name":"4-(1-hydroxyethyl)-7-isoleucino-2-(threonin-O3-ylcarbonyl)-7,8-dihydroquinolin-8-ol","type":"exact"},{"name":"BINDING 4-(1-hydroxyethyl)-7,8-dihydroquinolin-8-ol (covalent; via 2 links)","type":"exact"}],"termid":"MOD:01395"}


id: MONDO:0007717
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hemoglobin--variants for which the chain carrying the mutation 1S unknown or uncertain","secondary_identifiers":["MEDGEN:333610","OMIM:142309","UMLS:C1840647"],"synonyms":[{"name":"HEMOGLOBIN--variants FOR which the chain carrying the mutation IS unknown or uncertain","type":"related"}],"termid":"MONDO:0007717","xrefs":{"Monarch":{"xref_id":"0007717"}}}


id: PBO:0004211
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDK inhibitor Rum1","termid":"PBO:0004211"}


id: PBO:0055033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2448","termid":"PBO:0055033"}


id: PBO:0003566
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER associated protein disulfide isomerase Pdi2 (predicted)","termid":"PBO:0003566"}


id: GO:1900662
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of emericellamide A biosynthetic process.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of emericellamide biosynthetic process","termid":"GO:1900659"},{"relation_name":"is_a","term_name":"regulation of emericellamide A biosynthetic process","termid":"GO:1900661"},{"relation_name":"negatively_regulates","term_name":"emericellamide A biosynthetic process","termid":"GO:1900617"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"negatively_regulates","termid":"GO:0006629"},{"rel_name":"negatively_regulates","termid":"GO:0019748"},{"rel_name":"negatively_regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0019748","GO:0006629"],"is_obsolete":false,"name":"negative regulation of emericellamide A biosynthetic process","synonyms":[{"name":"down regulation of emericellamide A anabolism","type":"exact"},{"name":"down regulation of emericellamide A biosynthesis","type":"exact"},{"name":"down regulation of emericellamide A biosynthetic process","type":"exact"},{"name":"down regulation of emericellamide A formation","type":"exact"},{"name":"down regulation of emericellamide A synthesis","type":"exact"},{"name":"down-regulation of emericellamide A anabolism","type":"exact"},{"name":"down-regulation of emericellamide A biosynthesis","type":"exact"},{"name":"down-regulation of emericellamide A biosynthetic process","type":"exact"},{"name":"down-regulation of emericellamide A formation","type":"exact"},{"name":"down-regulation of emericellamide A synthesis","type":"exact"},{"name":"downregulation of emericellamide A anabolism","type":"exact"},{"name":"downregulation of emericellamide A biosynthesis","type":"exact"},{"name":"downregulation of emericellamide A biosynthetic process","type":"exact"},{"name":"downregulation of emericellamide A formation","type":"exact"},{"name":"downregulation of emericellamide A synthesis","type":"exact"},{"name":"inhibition of emericellamide A anabolism","type":"exact"},{"name":"inhibition of emericellamide A biosynthesis","type":"exact"},{"name":"inhibition of emericellamide A biosynthetic process","type":"narrow"},{"name":"inhibition of emericellamide A formation","type":"exact"},{"name":"inhibition of emericellamide A synthesis","type":"exact"},{"name":"negative regulation of emericellamide A anabolism","type":"exact"},{"name":"negative regulation of emericellamide A biosynthesis","type":"exact"},{"name":"negative regulation of emericellamide A formation","type":"exact"},{"name":"negative regulation of emericellamide A synthesis","type":"exact"}],"termid":"GO:1900662"}


id: FYPO:0007764
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which lipid droplets are larger than normal, and are surrounded by endoplasmic reticulum. Fewer droplets than normal may be present.","definition_xrefs":["PMID:25318672","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal lipid droplet morphology","termid":"FYPO:0000356"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"enlarged lipid droplets surrounded by endoplasmic reticulum","references_by_uniquename":{"PMID:25318672":null},"synonyms":[{"name":"enlarged lipid droplets surrounded by ER","type":"exact"},{"name":"enlarged lipid droplets surrounded by endoplasmic reticulum during mitotic cell cycle","type":"related"},{"name":"enlarged lipid droplets surrounded by endoplasmic reticulum during vegetative growth","type":"exact"},{"name":"large lipid droplets surrounded by endoplasmic reticulum","type":"exact"}],"termid":"FYPO:0007764"}


id: PBO:0049611
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H3 histone pseudogene 14","termid":"PBO:0049611"}


id: MONDO:0002493
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An invasive adenocarcinoma of the prostate gland composed of secretory cells. It is the most common histologic type of prostate adenocarcinoma. Several morphologic variants exist, including atrophic, pseudohyperplastic, foamy gland, and oncocytic variants.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acinar cell carcinoma","termid":"MONDO:0004965"},{"relation_name":"is_a","term_name":"prostate adenocarcinoma","termid":"MONDO:0005082"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"prostatic acinar adenocarcinoma","secondary_identifiers":["NCIT:C5596","UMLS:C1332139","DOID:3024","MEDGEN:231350"],"synonyms":[{"name":"acinar adenocarcinoma of prostate","type":"exact"},{"name":"acinar adenocarcinoma of the prostate","type":"exact"},{"name":"acinar prostate adenocarcinoma","type":"exact"},{"name":"prostate acinar adenocarcinoma","type":"exact"},{"name":"prostatic acinar adenocarcinoma","type":"exact"}],"termid":"MONDO:0002493","xrefs":{"Monarch":{"xref_id":"0002493"}}}


id: GO:0034276
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of kynurenic acid, 4-hydroxyquinoline-2-carboxylic acid.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kynurenic acid metabolic process","termid":"GO:0034275"},{"relation_name":"is_a","term_name":"monocarboxylic acid biosynthetic process","termid":"GO:0072330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"kynurenic acid biosynthetic process","synonyms":[{"name":"4-hydroxyquinoline-2-carboxylic acid biosynthetic process","type":"exact"},{"name":"kynurenic acid anabolism","type":"exact"},{"name":"kynurenic acid biosynthesis","type":"exact"},{"name":"kynurenic acid formation","type":"related"},{"name":"kynurenic acid synthesis","type":"exact"}],"termid":"GO:0034276"}


id: PBO:0113384
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative phosphomutase; contains a region homologous to the active site of phosphomutases; overexpression suppresses the histidine auxotrophy of an ade3 ade16 ade17 triple mutant and the temperature sensitivity of a tps2 mutant; localizes to cytosol an peroxisomes","termid":"PBO:0113384"}


id: PBO:0050462
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hook microtubule tethering protein 3","termid":"PBO:0050462"}


id: PBO:0043024
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CHMP1B antisense RNA 1","termid":"PBO:0043024"}


id: FYPO:0005625
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which a normal proportion of cells in the population remains viable after exposure to ultraviolet light during S phase of the mitotic cell cycle.","definition_xrefs":["PMID:26652183","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal viability following cellular response to UV","termid":"FYPO:0004662"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002057"}],"interesting_parent_ids":["FYPO:0002057","FYPO:0000257","FYPO:0000003"],"is_obsolete":false,"name":"normal viability following cellular response to UV during mitotic S phase","synonyms":[{"name":"normal cell population viability following cellular response to UV during mitotic S phase","type":"exact"},{"name":"normal viability following UV exposure during mitotic S phase","type":"exact"},{"name":"normal viability following cellular response to UV during S phase of mitotic cell cycle","type":"exact"},{"name":"normal viability following cellular response to ultraviolet light during mitotic S phase","type":"exact"}],"termid":"FYPO:0005625"}


id: PBO:0076253
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synaptic vesicle glycoprotein 2B","termid":"PBO:0076253"}


id: PBO:0002033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-splicing endonuclease subunit Sen15 (predicted)","termid":"PBO:0002033"}


id: PR:O74531
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pof7 gene.","definition_xrefs":["UniProtKB:O74531","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box protein pof7 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1827.08c","synonyms":[{"name":"Spom972h-pof7","type":"exact"}],"termid":"PR:O74531"}


id: GO:0004122
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-serine + L-homocysteine = cystathionine + H2O.","definition_xrefs":["EC:4.2.1.22"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829"],"is_obsolete":false,"name":"cystathionine beta-synthase activity","secondary_identifiers":["Reactome:R-HSA-1614524","RHEA:10112","MetaCyc:CYSTATHIONINE-BETA-SYNTHASE-RXN"],"synonyms":[{"name":"L-serine hydro-lyase (adding homocysteine)","type":"related"},{"name":"L-serine hydro-lyase (adding homocysteine; L-cystathionine-forming)","type":"related"},{"name":"beta-thionase activity","type":"related"},{"name":"methylcysteine synthase activity","type":"related"},{"name":"serine sulfhydrase activity","type":"related"},{"name":"serine sulfhydrylase activity","type":"related"}],"termid":"GO:0004122"}


id: PBO:0042534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDK5 regulatory subunit associated protein 1","termid":"PBO:0042534"}


id: PBO:0087628
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the cytosolic iron-sulfur (FeS) protein assembly machinery; required for maturation of cytosolic and nuclear FeS proteins and for normal resistance to oxidative stress; deficiency results in shortened lifespan and sensitivity to paraquat; homologous to human Narf","termid":"PBO:0087628"}


id: GO:0033931
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the endohydrolysis of (1->4)-alpha-D-galactosaminidic linkages in poly(D-galactosamine).","definition_xrefs":["EC:3.2.1.109"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosaminidase activity","termid":"GO:0015929"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016798","GO:0003674","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"endogalactosaminidase activity","secondary_identifiers":["MetaCyc:3.2.1.109-RXN"],"synonyms":[{"name":"galactosaminoglycan glycanohydrolase activity","type":"related"}],"termid":"GO:0033931"}


id: FYPO:0001617
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-isoleucine measured in the cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cellular amino acid level","termid":"FYPO:0003985"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"decreased cellular isoleucine level","synonyms":[{"name":"decreased cellular L-isoleucine level","type":"exact"},{"name":"decreased cellular isoleucine level during mitotic cell cycle","type":"related"},{"name":"decreased cellular isoleucine level during vegetative growth","type":"exact"},{"name":"decreased level of isoleucine in cell","type":"exact"},{"name":"reduced cellular isoleucine level","type":"exact"},{"name":"reduced level of isoleucine in cell","type":"exact"}],"termid":"FYPO:0001617"}


id: MONDO:0013941
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Metaphyseal chondromatosis with D-2-hydroxyglutaric aciduria is an extremely rare genetic disorder characterized by the unique association of enchondromatosis with D-2 hydroxyglutaric aciduria. Clinical features include enchondromatosis (with short stature, severe metaphyseal dysplasia and mild vertebral involvement), elevated levels of urinary 2-hydroxyglutaric acid and mild developmental delay.","definition_xrefs":["Orphanet:99646"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete primary bone dysplasia with disorganized development of skeletal components (obsolete MONDO:0019708)","termid":"MONDO:0019708"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"skeletal system disorder","termid":"MONDO:0005172"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metaphyseal chondromatosis with D-2-hydroxyglutaric aciduria","secondary_identifiers":["icd11.foundation:1777127218","MEDGEN:766872","OMIM:614875","UMLS:C3553958","GARD:16902"],"synonyms":[{"name":"metaphyseal Enchondrodysplasia with 2-hydroxyglutaric aciduria","type":"related"},{"name":"metaphyseal chondromatosis with D-2-hydroxyglutaric aciduria","type":"exact"},{"name":"metaphyseal enchondromatosis with D-2-hydroxyglutaric aciduria","type":"related"},{"name":"spondyloenchondromatosis with D-2-hydroxyglutaric aciduria","type":"related"}],"termid":"MONDO:0013941","xrefs":{"Monarch":{"xref_id":"0013941"}}}


id: MOD:00302
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-serine residue to O-(phosphoglycosyl-D-mannose-1-phosphoryl)-L-serine.","definition_xrefs":["RESID:AA0297","PubMed:15649890","Unimod:429","PubMed:10037765"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-serine residue","termid":"MOD:00916"},{"relation_name":"is_a","term_name":"glycosylphosphorylated residue","termid":"MOD:01804"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"O-(phosphoglycosyl-D-mannose-1-phosphoryl)-L-serine","synonyms":[{"name":"CARBOHYD O-linked (Man1P) serine","type":"exact"},{"name":"O-(D-mannose-1-phosphoryl)-L-serine","type":"exact"},{"name":"O-(alpha-D-mannosyl-1-phosphoryl)-L-serine","type":"exact"},{"name":"O-[alpha-D-mannopyranosyloxy(hydroxy)phosphoryl]-L-serine","type":"exact"},{"name":"O3-(D-mannose-1-phosphoryl)-L-serine","type":"exact"},{"name":"O3-L-serine alpha-D-mannopyranose 1-phosphodiester","type":"exact"},{"name":"PhosphoHex","type":"related"},{"name":"phosphoglycosyl-D-mannose-1-phosphoryl","type":"related"}],"termid":"MOD:00302"}


id: MONDO:0003804
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete blood protein disease (obsolete MONDO:0003804)","secondary_identifiers":["DOID:620","MESH:D001796"],"synonyms":[{"name":"Protein disorder, blood","type":"related"},{"name":"Protein disorders, blood","type":"related"},{"name":"blood Protein disorder","type":"related"},{"name":"blood protein disorder","type":"exact"},{"name":"disorder, blood Protein","type":"related"},{"name":"disorders, blood Protein","type":"related"}],"termid":"MONDO:0003804","xrefs":{"Monarch":{"xref_id":"0003804"}}}


id: GO:0030824
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving cGMP.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of cGMP metabolic process (obsolete GO:0030824)","synonyms":[{"name":"down regulation of cGMP metabolic process","type":"exact"},{"name":"down-regulation of cGMP metabolic process","type":"exact"},{"name":"downregulation of cGMP metabolic process","type":"exact"},{"name":"inhibition of cGMP metabolic process","type":"narrow"},{"name":"negative regulation of cGMP metabolism","type":"exact"}],"termid":"GO:0030824"}


id: GO:0015613
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete galactose/glucose (methylgalactoside) porter activity (obsolete GO:0015613)","synonyms":[{"name":"galactose/glucose (methylgalactoside) porter activity","type":"exact"}],"termid":"GO:0015613"}


id: PBO:0072923
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small Cajal body-specific RNA 4","termid":"PBO:0072923"}


id: GO:1904991
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of adenylate cyclase-inhibiting dopamine receptor signaling pathway.","definition_xrefs":["GOC:kmv","PMID:26554819","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of dopamine receptor signaling pathway","termid":"GO:0060160"},{"relation_name":"is_a","term_name":"regulation of adenylate cyclase-inhibiting dopamine receptor signaling pathway","termid":"GO:1904990"},{"relation_name":"negatively_regulates","term_name":"adenylate cyclase-inhibiting dopamine receptor signaling pathway","termid":"GO:0007195"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of adenylate cyclase-inhibiting dopamine receptor signaling pathway","synonyms":[{"name":"down regulation of adenylate cyclase-inhibiting dopamine receptor signaling pathway","type":"exact"},{"name":"down regulation of dopamine receptor, adenylate cyclase inhibiting pathway","type":"exact"},{"name":"down regulation of dopamine receptor, adenylyl cyclase inhibiting pathway","type":"exact"},{"name":"down regulation of inhibition of adenylate cyclase activity by dopamine receptor signaling pathway","type":"related"},{"name":"down regulation of inhibition of adenylate cyclase activity by dopamine receptor signalling pathway","type":"exact"},{"name":"down-regulation of adenylate cyclase-inhibiting dopamine receptor signaling pathway","type":"exact"},{"name":"down-regulation of dopamine receptor, adenylate cyclase inhibiting pathway","type":"exact"},{"name":"down-regulation of dopamine receptor, adenylyl cyclase inhibiting pathway","type":"exact"},{"name":"down-regulation of inhibition of adenylate cyclase activity by dopamine receptor signaling pathway","type":"related"},{"name":"down-regulation of inhibition of adenylate cyclase activity by dopamine receptor signalling pathway","type":"exact"},{"name":"downregulation of adenylate cyclase-inhibiting dopamine receptor signaling pathway","type":"exact"},{"name":"downregulation of dopamine receptor, adenylate cyclase inhibiting pathway","type":"exact"},{"name":"downregulation of dopamine receptor, adenylyl cyclase inhibiting pathway","type":"exact"},{"name":"downregulation of inhibition of adenylate cyclase activity by dopamine receptor signaling pathway","type":"related"},{"name":"downregulation of inhibition of adenylate cyclase activity by dopamine receptor signalling pathway","type":"exact"},{"name":"inhibition of adenylate cyclase-inhibiting dopamine receptor signaling pathway","type":"narrow"},{"name":"inhibition of dopamine receptor, adenylate cyclase inhibiting pathway","type":"narrow"},{"name":"inhibition of dopamine receptor, adenylyl cyclase inhibiting pathway","type":"narrow"},{"name":"inhibition of inhibition of adenylate cyclase activity by dopamine receptor signaling pathway","type":"related"},{"name":"inhibition of inhibition of adenylate cyclase activity by dopamine receptor signalling pathway","type":"narrow"},{"name":"negative regulation of dopamine receptor, adenylate cyclase inhibiting pathway","type":"exact"},{"name":"negative regulation of dopamine receptor, adenylyl cyclase inhibiting pathway","type":"exact"},{"name":"negative regulation of inhibition of adenylate cyclase activity by dopamine receptor signaling pathway","type":"related"},{"name":"negative regulation of inhibition of adenylate cyclase activity by dopamine receptor signalling pathway","type":"exact"}],"termid":"GO:1904991"}


id: GO:0070932
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H3 by the removal of one or more acetyl groups.","definition_xrefs":["GOC:BHF","GOC:rl"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H3 deacetylation (obsolete GO:0070932)","termid":"GO:0070932"}


id: GO:0045572
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of imaginal disc growth.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of imaginal disc growth","termid":"GO:0045570"},{"relation_name":"is_a","term_name":"positive regulation of developmental growth","termid":"GO:0048639"},{"relation_name":"positively_regulates","term_name":"imaginal disc growth","termid":"GO:0007446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of imaginal disc growth","synonyms":[{"name":"activation of imaginal disc growth","type":"narrow"},{"name":"stimulation of imaginal disc growth","type":"narrow"},{"name":"up regulation of imaginal disc growth","type":"exact"},{"name":"up-regulation of imaginal disc growth","type":"exact"},{"name":"upregulation of imaginal disc growth","type":"exact"}],"termid":"GO:0045572"}


id: GO:0072448
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of events in which information about cell size is received and converted into a molecular signal, contributing to a mitotic cell cycle G1/S transition size control checkpoint.","definition_xrefs":["GOC:mtg_cell_cycle"],"gene_count":0,"genotype_count":0,"name":"obsolete detection of stimulus involved in G1 cell size control checkpoint (obsolete GO:0072448)","synonyms":[{"name":"detection of stimulus involved in mitotic cell cycle G1/S transition size control checkpoint","type":"related"},{"name":"mitotic cell cycle G1/S transition size control checkpoint sensor mechanism","type":"related"},{"name":"mitotic cell cycle G1/S transition size control checkpoint sensor process","type":"related"},{"name":"sensing involved in mitotic cell cycle G1/S transition size control checkpoint","type":"related"}],"termid":"GO:0072448"}


id: GO:0007159
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The attachment of a leukocyte to another cell via adhesion molecules.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell adhesion","termid":"GO:0098609"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"leukocyte cell-cell adhesion","synonyms":[{"name":"leukocyte adhesion","type":"exact"},{"name":"leukocyte cell adhesion","type":"exact"}],"termid":"GO:0007159"}


id: PBO:0000309
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.-.-.-","termid":"PBO:0000309"}


id: PBO:0054879
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2293","termid":"PBO:0054879"}


id: PBO:0053011
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"late endosomal/lysosomal adaptor, MAPK and MTOR activator 1","termid":"PBO:0053011"}


id: PBO:0066054
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAP2C antisense RNA 1","termid":"PBO:0066054"}


id: PBO:0073038
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SCUBE1 antisense RNA 2","termid":"PBO:0073038"}


id: FYPO:0000271
data:
  {"alleles_by_uniquename":{"SJAG_00266:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00266","name":"atf1delta","uniquename":"SJAG_00266:allele-1"},"SJAG_02592:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02592","name":"sty1delta","uniquename":"SJAG_02592:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[119703,119715],"is_not":false,"summary":null,"term":"FYPO:0000271"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to a salt stress.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensitive to osmotic stress","termid":"FYPO:0000270"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00266":null,"SJAG_02592":null},"genotype_count":2,"genotypes_by_uniquename":{"atf1delta":{"display_name":"atf1delta","display_uniquename":"atf1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00266:allele-1","expression":"Null"}]}]},"sty1delta":{"display_name":"sty1delta","display_uniquename":"sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0000139","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to salt stress","references_by_uniquename":{"PMID:31150379":null},"single_locus_annotated_genes":["SJAG_02592","SJAG_00266"],"single_locus_genotype_uniquenames":["sty1delta","atf1delta"],"synonyms":[{"name":"hypersensitive to salt stress","type":"exact"},{"name":"ionic stress resistance: decreased","type":"related"},{"name":"sensitive to salt stress during mitotic cell cycle","type":"related"},{"name":"sensitive to salt stress during vegetative growth","type":"exact"}],"termid":"FYPO:0000271","terms_by_termid":{"FYECO:0000207":null,"FYPO:0000271":null,"FYPO_EXT:0000001":null}}


id: PBO:0061292
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuronal PAS domain protein 3","termid":"PBO:0061292"}


id: GO:0002297
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a CD4-positive, alpha-beta T cell becomes committed to becoming a T-helper 2 cell, a CD4-positive, alpha-beta T cell specialized to promote immunological processes often associated with resistance to extracellular organisms such as helminths, enhanced production of particular antibody isotypes, and pathological conditions such as allergy.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T-helper cell lineage commitment","termid":"GO:0002295"},{"relation_name":"part_of","term_name":"T-helper 2 cell differentiation","termid":"GO:0045064"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"T-helper 2 cell lineage commitment","synonyms":[{"name":"T-helper 2 cell fate commitment","type":"exact"},{"name":"Th2 fate commitment","type":"exact"}],"termid":"GO:0002297"}


id: PBO:0068510
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 100, pseudogene","termid":"PBO:0068510"}


id: PBO:0042122
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 195","termid":"PBO:0042122"}


id: PBO:0055963
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat containing 75B","termid":"PBO:0055963"}


id: GO:0047562
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (3R)-3-hydroxy-L-aspartate = glycine + glyoxylate.","definition_xrefs":["EC:4.1.3.14","RHEA:14377"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxo-acid-lyase activity","termid":"GO:0016833"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0016829","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"3-hydroxyaspartate aldolase activity","secondary_identifiers":["MetaCyc:RXN-11769","KEGG_REACTION:R00478"],"synonyms":[{"name":"erythro-3-hydroxy-L(s)-aspartate glyoxylate-lyase activity","type":"related"},{"name":"erythro-3-hydroxy-Ls-aspartate glyoxylate-lyase (glycine-forming)","type":"related"},{"name":"erythro-3-hydroxy-Ls-aspartate glyoxylate-lyase activity","type":"related"},{"name":"erythro-beta-hydroxyaspartate aldolase activity","type":"related"},{"name":"erythro-beta-hydroxyaspartate glycine-lyase activity","type":"related"}],"termid":"GO:0047562"}


id: PBO:0061037
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NIP7 pseudogene 3","termid":"PBO:0061037"}


id: PBO:0040246
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy related 4A cysteine peptidase pseudogene 1","termid":"PBO:0040246"}


id: GO:0009139
data:
  {"annotated_genes":["SJAG_00779","SJAG_04657","SJAG_04665","SJAG_02874","SJAG_00885"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[80779],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046705"},{"annotations":[95851,107626,92802],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006240"},{"annotations":[71417],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006233"},{"annotations":[71416],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006227"},{"annotations":[80781],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006225"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of pyrimidine nucleoside diphosphate, a compound consisting of a pyrimidine base linked to a ribose or deoxyribose sugar esterified with diphosphate on the sugar.","definition_xrefs":["ISBN:0198506732","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside diphosphate biosynthetic process","termid":"GO:0009133"},{"relation_name":"is_a","term_name":"pyrimidine nucleoside diphosphate metabolic process","termid":"GO:0009138"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00779":null,"SJAG_00885":null,"SJAG_02874":null,"SJAG_04657":null,"SJAG_04665":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0055086"],"is_obsolete":false,"name":"pyrimidine nucleoside diphosphate biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"pyrimidine nucleoside diphosphate anabolism","type":"exact"},{"name":"pyrimidine nucleoside diphosphate biosynthesis","type":"exact"},{"name":"pyrimidine nucleoside diphosphate formation","type":"exact"},{"name":"pyrimidine nucleoside diphosphate synthesis","type":"exact"}],"termid":"GO:0009139","terms_by_termid":{"GO:0006225":null,"GO:0006227":null,"GO:0006233":null,"GO:0006240":null,"GO:0046705":null}}


id: GO:0034060
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The space enclosed by the double membrane of a cyanelle.","definition_xrefs":["GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plastid stroma","termid":"GO:0009532"},{"relation_name":"part_of","term_name":"cyanelle","termid":"GO:0009842"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"cyanelle stroma","termid":"GO:0034060"}


id: GO:0036283
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of the movement of a transcription factor from the cytoplasm to the nucleus under conditions of oxidative stress.","definition_xrefs":["GOC:al","PMID:9585505"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transcription factor import into nucleus in response to oxidative stress (obsolete GO:0036283)","synonyms":[{"name":"positive regulation of transcription factor import into nucleus in response to hydrogen peroxide","type":"related"}],"termid":"GO:0036283"}


id: PBO:0051740
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"integrator complex subunit 7","termid":"PBO:0051740"}


id: MONDO:0000630
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign neoplasm that involves the immune organ.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune system disorder","termid":"MONDO:0005046"},{"relation_name":"is_a","term_name":"benign neoplasm","termid":"MONDO:0005165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"immune system organ benign neoplasm","secondary_identifiers":["DOID:0060092"],"synonyms":[{"name":"immune organ benign neoplasm","type":"exact"}],"termid":"MONDO:0000630","xrefs":{"Monarch":{"xref_id":"0000630"}}}


id: MONDO:0001428
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"stomach disorder","termid":"MONDO:0004298"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"pylorospasm","secondary_identifiers":["MEDGEN:508908","SCTID:335002","DOID:12072","ICD9:537.81","UMLS:C0152163"],"termid":"MONDO:0001428","xrefs":{"Monarch":{"xref_id":"0001428"}}}


id: GO:0032806
data:
  {"annotated_genes":["SJAG_04368","SJAG_01213","SJAG_03206","SJAG_01149","SJAG_04614","SJAG_03618","SJAG_03967","SJAG_02057","SJAG_03061","SJAG_00512","SJAG_00150","SJAG_00758","SJAG_01207","SJAG_00995","SJAG_00901","SJAG_04420"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[96162,111295,79910],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070692"},{"annotations":[109409,109253],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070691"},{"annotations":[70721,115210,70425,74750,79113,109358,92536,76777],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005675"},{"annotations":[76637,60994,112466],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0070985"}]},"cv_name":"cellular_component","definition":"A protein complex that phosphorylates amino acid residues of RNA polymerase II C-terminal domain repeats; phosphorylation occurs mainly on Ser2 and Ser5.","definition_xrefs":["PMID:15047695","PMID:16721054","PMID:17079683"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"},{"relation_name":"is_a","term_name":"serine/threonine protein kinase complex","termid":"GO:1902554"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00150":null,"SJAG_00512":null,"SJAG_00758":null,"SJAG_00901":null,"SJAG_00995":null,"SJAG_01149":null,"SJAG_01207":null,"SJAG_01213":null,"SJAG_02057":null,"SJAG_03061":null,"SJAG_03206":null,"SJAG_03618":null,"SJAG_03967":null,"SJAG_04368":null,"SJAG_04420":null,"SJAG_04614":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0005634","GO:0032991"],"is_obsolete":false,"name":"carboxy-terminal domain protein kinase complex","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"CTDK complex","type":"exact"}],"termid":"GO:0032806","terms_by_termid":{"GO:0005675":null,"GO:0070691":null,"GO:0070692":null,"GO:0070985":null}}


id: GO:0034980
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that contains CREB and FHL2, and is involved in transcriptional regulation.","definition_xrefs":["PMID:11046156"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA helicase complex","termid":"GO:0033202"},{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005634"],"is_obsolete":false,"name":"FHL2-CREB complex","termid":"GO:0034980"}


id: PBO:0068915
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 158, pseudogene","termid":"PBO:0068915"}


id: MONDO:0003217
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete ureter carcinoma (obsolete MONDO:0003217)","termid":"MONDO:0003217","xrefs":{"Monarch":{"xref_id":"0003217"}}}


id: GO:0047487
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-(4-deoxy-alpha-D-gluc-4-enuronosyl)-D-galacturonate = 2 5-dehydro-4-deoxy-D-glucuronate.","definition_xrefs":["MetaCyc:OLIGOGALACTURONIDE-LYASE-RXN","EC:4.2.2.6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on polysaccharides","termid":"GO:0016837"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"oligogalacturonide lyase activity","secondary_identifiers":["RHEA:20269"],"synonyms":[{"name":"OGTE","type":"related"},{"name":"oligogalacturonate lyase activity","type":"related"},{"name":"unsaturated oligogalacturonate transeliminase activity","type":"related"}],"termid":"GO:0047487"}


id: PBO:0066953
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 255","termid":"PBO:0066953"}


id: GO:0060446
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of branches in the open tracheal system are generated and organized.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"branching morphogenesis of an epithelial tube","termid":"GO:0048754"},{"relation_name":"part_of","term_name":"open tracheal system development","termid":"GO:0007424"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"branching involved in open tracheal system development","termid":"GO:0060446"}


id: PBO:0066152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RB binding protein 5, histone lysine methyltransferase complex subunit","termid":"PBO:0066152"}


id: MONDO:0020635
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A WHO grade III meningioma characterized by the presence of malignant morphologic features, including malignant cytology and a very high mitotic index (20 or more mitoses per ten high power fields).","definition_xrefs":["NCIT:C4051"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anaplastic cancer","termid":"MONDO:0020633"},{"relation_name":"is_a","term_name":"grade III meningioma","termid":"MONDO:0020634"},{"relation_name":"is_a","term_name":"high grade malignant neoplasm","termid":"MONDO:0020665"},{"relation_name":"is_a","term_name":"malignant tumor of meninges","termid":"MONDO:0021322"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"anaplastic meningioma","secondary_identifiers":["ONCOTREE:ANM","ICDO:9530/3","MEDGEN:75478","UMLS:C0259785"],"synonyms":[{"name":"anaplastic (malignant) meningioma","type":"exact"},{"name":"anaplastic meningioma","type":"exact"},{"name":"malignant meningioma","type":"exact"},{"name":"meningioma, anaplastic, malignant","type":"exact"},{"name":"meningioma, malignant","type":"related"}],"termid":"MONDO:0020635","xrefs":{"Monarch":{"xref_id":"0020635"}}}


id: PBO:0002583
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytoskeletal signaling protein (predicted)","termid":"PBO:0002583"}


id: MONDO:1010481
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Tetralogy of fallot that occurs in snow leopard.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tetralogy of fallot, non-human animal","termid":"MONDO:1010021"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetralogy of fallot, snow leopard","secondary_identifiers":["OMIA:000994-29064"],"termid":"MONDO:1010481","xrefs":{"Monarch":{"xref_id":"1010481"}}}


id: GO:0003086
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which angiotensinogen metabolites in the kidney modulate the force with which blood passes through the renal circulatory system. The process begins when renin cleaves angiotensinogen.","definition_xrefs":["GOC:mtg_cardio"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of systemic arterial blood pressure by renin-angiotensin","termid":"GO:0003081"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of systemic arterial blood pressure by local renal renin-angiotensin","termid":"GO:0003086"}


id: GO:0008018
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete structural protein of chorion (sensu Drosophila) (obsolete GO:0008018)","synonyms":[{"name":"structural protein of chorion (sensu Drosophila)","type":"exact"}],"termid":"GO:0008018"}


id: FYPO:0003497
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of azetidine-2-carboxylic acid acetyltransferase activity is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased catalytic activity","termid":"FYPO:0000662"},{"relation_name":"is_a","term_name":"abnormal azetidine-2-carboxylic acid acetyltransferase activity","termid":"FYPO:0003495"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000661","FYPO:0000652","FYPO:0000707","FYPO:0001985","FYPO:0000654"],"is_obsolete":false,"name":"increased azetidine-2-carboxylic acid acetyltransferase activity","termid":"FYPO:0003497"}


id: PBO:0005852
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane associated protein Pal1","termid":"PBO:0005852"}


id: PBO:0005402
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4.1.1.37","termid":"PBO:0005402"}


id: PATO:0001886
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A physical quality inhering in a bearer by virtue the bearer's disposition to having an affinity for water; it is readily absorbing or dissolving in water.","definition_xrefs":["answers.com:answers.com"],"direct_ancestors":[{"relation_name":"is_a","term_name":"physical quality","termid":"PATO:0001018"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydrophilicity","termid":"PATO:0001886"}


id: PBO:0072980
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secretoglobin family 3A member 1","termid":"PBO:0072980"}


id: PBO:0060834
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NEDD4 like E3 ubiquitin protein ligase","termid":"PBO:0060834"}


id: PBO:0048193
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GA binding protein transcription factor subunit beta 1","termid":"PBO:0048193"}


id: MONDO:0000144
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pregnancy loss, recurrent, susceptibility","termid":"MONDO:0000144","xrefs":{"Monarch":{"xref_id":"0000144"}}}


id: GO:0050359
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: ATP + tropomyosin = ADP + O-phosphotropomyosin.","definition_xrefs":["MetaCyc:TROPOMYOSIN-KINASE-RXN"],"gene_count":0,"genotype_count":0,"name":"obsolete tropomyosin kinase activity (obsolete GO:0050359)","synonyms":[{"name":"ATP:tropomyosin O-phosphotransferase activity","type":"related"},{"name":"STK","type":"related"},{"name":"tropomyosin kinase (phosphorylating) activity","type":"related"}],"termid":"GO:0050359"}


id: GO:0039648
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process by which a symbiont alters ubiquitin-like protein modification of target proteins of either host or symbiont proteins. This includes ubiquitination, SUMOylation, NEDDylation, and ISG15ylation. The ubiquitination status of a protein  affects whether it is targeted to the proteasome for degradation. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:26712804","PMID:26483404","PMID:25166298"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host cellular process","termid":"GO:0044068"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated perturbation of host ubiquitin-like protein modification","synonyms":[{"name":"modulation by symbiont of host protein ubiquitination","type":"exact"},{"name":"modulation of host ubiquitin pathway by virus","type":"narrow"},{"name":"symbiont-mediated perturbation of host protein SUMOlyation","type":"narrow"},{"name":"symbiont-mediated perturbation of host protein ubiquitination","type":"narrow"}],"termid":"GO:0039648"}


id: MONDO:0020503
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete resistance to thyrotropin-releasing hormone syndrome (obsolete MONDO:0020503)","termid":"MONDO:0020503","xrefs":{"Monarch":{"xref_id":"0020503"}}}


id: GO:0099562
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process which maintains the organization and the arrangement of proteins in the presynaptic density.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maintenance of postsynaptic specialization structure","termid":"GO:0098880"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"maintenance of postsynaptic density structure","termid":"GO:0099562"}


id: PR:O14035
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC29B12.14c gene.","definition_xrefs":["UniProtKB:O14035","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized permease C29B12.14c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC29B12.14c","synonyms":[{"name":"Spom972h-SPAC29B12.14c","type":"exact"}],"termid":"PR:O14035"}


id: GO:0019536
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving vibriobactin, the major siderophore produced by Vibrio cholerae.","definition_xrefs":["PMID:11112537","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"siderophore metabolic process","termid":"GO:0009237"},{"relation_name":"is_a","term_name":"amide metabolic process","termid":"GO:0043603"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"vibriobactin metabolic process","synonyms":[{"name":"vibriobactin metabolism","type":"exact"}],"termid":"GO:0019536"}


id: MONDO:0800388
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A poisoning that is caused by exposure to cardiac glycoside.","definition_xrefs":["MONDO:patterns/patterns/poisoning"],"direct_ancestors":[{"relation_name":"is_a","term_name":"poisoning","termid":"MONDO:0029000"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cardiac glycoside intoxication","synonyms":[{"name":"cardiac glycoside poisoning","type":"exact"},{"name":"digitalis intoxication","type":"narrow"},{"name":"digitalis toxicity","type":"narrow"}],"termid":"MONDO:0800388","xrefs":{"Monarch":{"xref_id":"0800388"}}}


id: GO:0031768
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a ghrelin receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor binding","termid":"GO:0001664"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"ghrelin receptor binding","synonyms":[{"name":"ghrelin receptor ligand","type":"narrow"},{"name":"type 1 growth hormone secretagogue GH-releasing peptide receptor binding","type":"exact"}],"termid":"GO:0031768"}


id: MONDO:0005300
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Impairment of the renal function secondary to chronic kidney damage persisting for three or more months.","definition_xrefs":["NCIT:C80078"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kidney disorder","termid":"MONDO:0005240"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"chronic kidney disease","secondary_identifiers":["ICD10CM:N18.9","MEDGEN:473458","ICD9:585.6","ICD9:585","MESH:D007676","DOID:784","NANDO:2100023","EFO:0003884","NANDO:2100008","SCTID:709044004","UMLS:C1561643","icd11.foundation:412389819"],"synonyms":[{"name":"CKD","type":"exact"},{"name":"CKD - chronic kidney disease","type":"exact"},{"name":"chronic kidney disease","type":"exact"},{"name":"chronic renal disease","type":"exact"},{"name":"chronic renal failure syndrome","type":"narrow"},{"name":"chronic renal insufficiency","type":"related"},{"name":"kidney disease, chronic","type":"exact"},{"name":"renal failure - chronic","type":"exact"}],"termid":"MONDO:0005300","xrefs":{"Monarch":{"xref_id":"0005300"}}}


id: GO:0044355
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A defense process that protects an organism from invading foreign DNA.","definition_xrefs":["GO:jl","PMID:20062055"],"direct_ancestors":[{"relation_name":"is_a","term_name":"clearance of foreign intracellular nucleic acids","termid":"GO:0099046"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"clearance of foreign intracellular DNA","secondary_identifiers":["GO:0044356"],"synonyms":[{"name":"clearance of foreign intracellular DNA by conversion of DNA cytidine to uridine","type":"narrow"}],"termid":"GO:0044355"}


id: PBO:0047118
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 166 member A","termid":"PBO:0047118"}


id: GO:1905528
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of Golgi lumen acidification.","definition_xrefs":["GO_REF:0000058","PMID:23447592","GOC:TermGenie","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular pH reduction","termid":"GO:0032849"},{"relation_name":"is_a","term_name":"regulation of Golgi lumen acidification","termid":"GO:1905526"},{"relation_name":"positively_regulates","term_name":"Golgi lumen acidification","termid":"GO:0061795"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of Golgi lumen acidification","synonyms":[{"name":"activation of Golgi lumen acidification","type":"narrow"},{"name":"up regulation of Golgi lumen acidification","type":"exact"},{"name":"up-regulation of Golgi lumen acidification","type":"exact"},{"name":"upregulation of Golgi lumen acidification","type":"exact"}],"termid":"GO:1905528"}


id: PBO:0086520
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; conserved across S. cerevisiae strains; partially overlaps dubious ORF YFL015W-A; YFL015C is not an essential gene","termid":"PBO:0086520"}


id: MONDO:0019203
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Acute interstitial pneumonia (AIP), also referred to as Hamman-Rich syndrome, is a rapidly progressive and histologically distinct form of idiopathic interstitial pneumonia.","definition_xrefs":["Orphanet:79126"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete idiopathic pulmonary fibrosis (obsolete MONDO:0008345)","termid":"MONDO:0008345"},{"relation_name":"is_a","term_name":"idiopathic interstitial pneumonia","termid":"MONDO:0002429"},{"relation_name":"is_a","term_name":"acute disease","termid":"MONDO:0020683"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acute interstitial pneumonia","secondary_identifiers":["DOID:2800","MedDRA:10066728","icd11.foundation:2116884221","NANDO:1200420","SCTID:236302005","MEDGEN:39340","GARD:12835","NCIT:C35806","ICD9:516.33","UMLS:C0085786"],"synonyms":[{"name":"AIP","type":"exact"},{"name":"Hamman-rich disease","type":"exact"},{"name":"Hamman-rich syndrome","type":"exact"},{"name":"accelerated interstitial pneumonia","type":"exact"},{"name":"acute interstitial pneumonitis","type":"exact"},{"name":"idiopathic pulmonary fibrosis, acute fatal form","type":"exact"}],"termid":"MONDO:0019203","xrefs":{"Monarch":{"xref_id":"0019203"}}}


id: FYPO:0006060
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the septin ring does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to cell cortex during vegetative growth","termid":"FYPO:0000930"},{"relation_name":"is_a","term_name":"abnormal protein localization to septin ring","termid":"FYPO:0006059"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"abolished protein localization to septin ring","synonyms":[{"name":"abolished protein localisation to septin ring","type":"exact"},{"name":"abolished protein localization to septin ring during mitotic cell cycle","type":"related"},{"name":"protein absent from septin ring","type":"related"},{"name":"protein localization to septin ring abolished","type":"exact"},{"name":"protein localization to septin ring abolished during vegetative growth","type":"exact"}],"termid":"FYPO:0006060"}


id: PBO:0053841
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1107","termid":"PBO:0053841"}


id: PBO:0063938
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PIMREG pseudogene 3","termid":"PBO:0063938"}


id: GO:0030849
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Any chromosome other than a sex chromosome.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome","termid":"GO:0005694"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005694"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005694","GO:0005575"],"is_obsolete":false,"name":"autosome","secondary_identifiers":["Wikipedia:Autosome"],"termid":"GO:0030849"}


id: GO:0102381
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: stevioside + UDP-alpha-D-glucose = H+ + rebaudioside A + UDP.","definition_xrefs":["RHEA:61756"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0003824","GO:0016757"],"is_obsolete":false,"name":"stevioside glucosyltransferase activity (rebaudioside A forming)","secondary_identifiers":["MetaCyc:RXN-13517"],"termid":"GO:0102381"}


id: MONDO:0015571
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Deletion 5q35 refers to the different congenital malformation syndromes resulting from deletions of variable extent of the terminal part of the long arm of chromosome 5 (5q), spanning the region from 5q35.1 to 5q35.3 . The most significant anomaly is a recurring deletion in 5q35.2 comprising the NSD1 gene that causes Sotos syndrome that is characterized by cardinal features including excessive growth during childhood, macrocephaly, distinctive facial gestalt and various degrees of learning difficulty. Subtelomeric deletions of the terminal 3.5 Mb region on 5q35.3 are very rare, characterized by prenatal lymphedema with increased nuchal translucency, pronounced muscular hypotonia in infancy, borderline intelligence, postnatal short stature due to growth hormone deficiency, and a variety of minor anomalies such as mildly bell-shaped chest, minor congenital heart defects and a distinct facial gestalt. Larger deletions including bands 5q35.1, 5q35.2 and 5q35.3 cause a more severe phenotype that associates severe developmental delay with microcephaly, and significant cardiac defects (e.g. atrial septal defect with/without atrioventricular conduction defects, Ebstein anomaly, tetralogy of Fallot) linked to haploinsufficiency of NKX2.5 (5q35.1). Various combinations of signs may result from deletions of variable extent depending on the genes comprised in the deleted segment.","definition_xrefs":["Orphanet:1627"],"direct_ancestors":[{"relation_name":"is_a","term_name":"partial deletion of the long arm of chromosome 5","termid":"MONDO:0016904"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deletion 5q35","secondary_identifiers":["MEDGEN:419838","MESH:C537647","UMLS:C2931574","GARD:18730","SCTID:721158009"],"synonyms":[{"name":"Del (5)(q35)","type":"exact"},{"name":"Del (5)(qter)","type":"exact"},{"name":"deletion type 5q35","type":"exact"},{"name":"distal 5q deletion","type":"exact"},{"name":"monosomy 5q35","type":"exact"},{"name":"telomeric deletion 5q","type":"exact"}],"termid":"MONDO:0015571","xrefs":{"Monarch":{"xref_id":"0015571"}}}


id: PBO:0062676
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 14 subfamily I member 1","termid":"PBO:0062676"}


id: MONDO:0100115
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An acute onset of focal limb weakness that is associated mainly with gray matter abnormalities or CSF pleocytosis, but which is without an apparent cause.","definition_xrefs":["NCIT:C128379"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myelitis","termid":"MONDO:0002565"},{"relation_name":"is_a","term_name":"acute disease","termid":"MONDO:0020683"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acute flaccid myelitis","secondary_identifiers":["Orphanet:623801","MEDGEN:927532","UMLS:C4290000","MESH:C000629404","DOID:0080947","GARD:13142"],"synonyms":[{"name":"AFM","type":"exact"}],"termid":"MONDO:0100115","xrefs":{"Monarch":{"xref_id":"0100115"}}}


id: FYPO:0007397
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of heme into the cell is abolished.","definition_xrefs":["PomBase:mah","GO:0140420"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular process during vegetative growth","termid":"FYPO:0001362"},{"relation_name":"is_a","term_name":"abnormal transport","termid":"FYPO:0001720"},{"relation_name":"is_a","term_name":"abolished biological process","termid":"FYPO:0005448"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0000138","FYPO:0001320"],"is_obsolete":false,"name":"abolished heme import","synonyms":[{"name":"abolished haem import","type":"exact"},{"name":"abolished heme import during mitotic cell cycle","type":"related"},{"name":"abolished heme import during vegetative growth","type":"exact"},{"name":"abolished heme import into cell","type":"exact"},{"name":"heme import abolished during vegetative growth","type":"exact"}],"termid":"FYPO:0007397"}


id: GO:1900326
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of maltotriulose transport.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of transport","termid":"GO:0051050"},{"relation_name":"is_a","term_name":"regulation of maltotriulose transport","termid":"GO:1900324"},{"relation_name":"positively_regulates","term_name":"maltotriulose transport","termid":"GO:2001090"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of maltotriulose transport","synonyms":[{"name":"activation of maltotriulose transport","type":"narrow"},{"name":"up regulation of maltotriulose transport","type":"exact"},{"name":"up-regulation of maltotriulose transport","type":"exact"},{"name":"upregulation of maltotriulose transport","type":"exact"}],"termid":"GO:1900326"}


id: SO:0001238
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The tanscription start site that is most frequently used for transcription of a gene.","direct_ancestors":[{"relation_name":"is_a","term_name":"TSS","termid":"SO:0000315"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major_TSS","synonyms":[{"name":"major TSS","type":"exact"},{"name":"major transcription start site","type":"exact"}],"termid":"SO:0001238"}


id: MONDO:0060720
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital disorder of glycosylation","termid":"MONDO:0015286"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0024322"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0024322","MONDO:0005066"],"is_obsolete":false,"name":"congenital disorder of glycosylation with defective fucosylation","secondary_identifiers":["UMLS:C4693905","MEDGEN:1647704","OMIMPS:618005"],"synonyms":[{"name":"CDGF","type":"related"},{"name":"congenital disorder of glycosylation with defective fucosylation","type":"exact"}],"termid":"MONDO:0060720","xrefs":{"Monarch":{"xref_id":"0060720"}}}


id: PBO:0007962
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphotyrosyl phosphatase activator Ypa2","termid":"PBO:0007962"}


id: GO:0043731
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the oxidative decarboxylation of 6-hydroxynicotinate to 2,5-dihydroxypyridine, dependent on O2, NADH +H+ and FAD.","definition_xrefs":["GOC:jl","PMID:10091591"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"6-hydroxynicotinate 3-monooxygenase activity","secondary_identifiers":["MetaCyc:RXN-7573","RHEA:27333","EC:1.14.13.114"],"termid":"GO:0043731"}


id: MONDO:0011520
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"systemic lupus erythematosus, susceptibility to, 2","secondary_identifiers":["MEDGEN:343159","UMLS:C1854577","OMIM:605218"],"synonyms":[{"name":"SLEB2","type":"exact"},{"name":"susceptibility to systemic lupus erythematosus 2","type":"exact"},{"name":"systemic lupus erythematosus, susceptibility to, 2","type":"exact"},{"name":"systemic lupus erythematosus, susceptibility to, type 2","type":"exact"}],"termid":"MONDO:0011520","xrefs":{"Monarch":{"xref_id":"0011520"}}}


id: MONDO:0042601
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Samson-Gardner syndrome","secondary_identifiers":["MEDGEN:419807","UMLS:C2931448","MESH:C537230"],"synonyms":[{"name":"Samson Gardner syndrome","type":"related"},{"name":"craniosynostosis, microcephaly, hydrancephaly, humero-radial synostosis, and thumb aplasia","type":"related"}],"termid":"MONDO:0042601","xrefs":{"Monarch":{"xref_id":"0042601"}}}


id: PBO:0004707
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin activating enzyme E1","termid":"PBO:0004707"}


id: MONDO:0000004
data:
  {"annotated_genes":["SJAG_04270"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87612],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013310"}]},"cv_name":"mondo","definition":"An endocrine or hormonal disorder that occurs when the adrenal cortex does not produce enough of the hormone cortisol and in some cases, the hormone aldosterone. It may be due to a disorder of the adrenal cortex (Addison's disease or primary adrenal insufficiency) or to inadequate secretion of ACTH by the pituitary gland (secondary adrenal insufficiency).","definition_xrefs":["NCIT:C26691"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adrenal cortex disorder","termid":"MONDO:0002816"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04270":null},"genotype_count":0,"is_obsolete":false,"name":"adrenocortical insufficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["SCTID:386584007","ICD9:255.41","MEDGEN:589758","MESH:D000309","icd11.foundation:733056203","EFO:0009491","UMLS:C0405580","ICD9:255.4","DOID:10493"],"synonyms":[{"name":"adrenal cortical hypofunction","type":"exact"},{"name":"adrenal cortical insufficiency","type":"exact"},{"name":"adrenal gland insufficiency","type":"exact"},{"name":"adrenal insufficiency","type":"exact"},{"name":"adrenocortical insufficiency","type":"exact"},{"name":"corticoadrenal insufficiency","type":"exact"},{"name":"hypoadrenalism","type":"related"},{"name":"hypocortisolemia","type":"exact"},{"name":"hypocortisolism","type":"exact"}],"termid":"MONDO:0000004","terms_by_termid":{"MONDO:0013310":null},"xrefs":{"Monarch":{"xref_id":"0000004"}}}


id: MONDO:0019128
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete non-syndromic uterovaginal malformation (obsolete MONDO:0015829)","termid":"MONDO:0015829"},{"relation_name":"is_a","term_name":"female reproductive system disorder","termid":"MONDO:0002263"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mullerian aplasia","secondary_identifiers":["SCTID:253828000","GARD:7100","Orphanet:73217","UMLS:C0431637","MESH:C537371","MEDGEN:98466"],"synonyms":[{"name":"Mullerian duct failure","type":"exact"},{"name":"Müllerian aplasia","type":"related"},{"name":"Müllerian duct failure","type":"exact"},{"name":"aplasia of the Mullerian ducts","type":"exact"},{"name":"aplasia of the Müllerian ducts","type":"exact"}],"termid":"MONDO:0019128","xrefs":{"Monarch":{"xref_id":"0019128"}}}


id: GO:0072588
data:
  {"annotated_genes":["SJAG_00083","SJAG_01234","SJAG_00566","SJAG_04754"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[59294,78144,80480,74881],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031429"}]},"cv_name":"cellular_component","definition":"A ribonucleoprotein complex that contains an RNA of the box H/ACA type and the four core proteins dyskerin, NOP10, NHP2, and GAR1 (human protein nomenclature). RNA pseudouridylation (isomerization of uridine to pseudouridine) is the major, and most likely the ancestral, function of H/ACA RNPs. Pseudouridylation targets include both large and small ribosomal RNAs (rRNAs), and small nuclear RNA (U2 snRNA). In addition to these catalytic H/ACA RNPs, a less abundant but more diverse class of structural H/ACA RNPs exists, which does not have pseudouridylation activity. These include the vertebrate telomerase RNP complex.","definition_xrefs":["PMID:25590339","GOC:vw","GOC:BHF","PMID:17284456","GOC:mah","PMID:20227365","GOC:jbu","GOC:krc","GOC:BHF_telomerase"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sno(s)RNA-containing ribonucleoprotein complex","termid":"GO:0005732"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00083":null,"SJAG_00566":null,"SJAG_01234":null,"SJAG_04754":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"box H/ACA RNP complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000104":null},"synonyms":[{"name":"box H/ACA snoRNP pseudouridylase complex","type":"related"},{"name":"sRNP complex","type":"narrow"}],"termid":"GO:0072588","terms_by_termid":{"GO:0031429":null}}


id: PBO:0052019
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"jumonji domain containing 8","termid":"PBO:0052019"}


id: PBO:0003990
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO E1-like activator enzyme Fub2 (predicted)","termid":"PBO:0003990"}


id: GO:0003779
data:
  {"annotated_genes":["SJAG_04703","SJAG_03011","SJAG_02431","SJAG_02566","SJAG_00521","SJAG_00279","SJAG_03380","SJAG_03703","SJAG_01964","SJAG_01384","SJAG_03025","SJAG_04001","SJAG_00970","SJAG_03465","SJAG_00677","SJAG_00938","SJAG_04498","SJAG_01268","SJAG_01598","SJAG_01943","SJAG_04621","SJAG_02245","SJAG_02075","SJAG_00152","SJAG_04141","SJAG_03088","SJAG_03455","SJAG_01754","SJAG_02700","SJAG_03119","SJAG_01993","SJAG_02396","SJAG_03086","SJAG_04982","SJAG_03229","SJAG_01894","SJAG_04100","SJAG_04886"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[61657,62614,66224,68337,69718,69761,70153,70674,71559],"is_not":false,"summary":null,"term":"GO:0003779"},{"annotations":[78195,70386,75964,76078,76725,77802,76992,78119,80570,71339,75313,70772,73802,78527,79536,80084,70376,76422,76806,74783,75141,77028,71933,79409,79352,80000,80338],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051015"},{"annotations":[77595],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003786"},{"annotations":[72448,76076],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003785"}]},"cv_name":"molecular_function","definition":"Binding to monomeric or multimeric forms of actin, including actin filaments.","definition_xrefs":["GOC:clt"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoskeletal protein binding","termid":"GO:0008092"}],"gene_count":38,"genes_by_uniquename":{"SJAG_00152":null,"SJAG_00279":null,"SJAG_00521":null,"SJAG_00677":null,"SJAG_00938":null,"SJAG_00970":null,"SJAG_01268":null,"SJAG_01384":null,"SJAG_01598":null,"SJAG_01754":null,"SJAG_01894":null,"SJAG_01943":null,"SJAG_01964":null,"SJAG_01993":null,"SJAG_02075":null,"SJAG_02245":null,"SJAG_02396":null,"SJAG_02431":null,"SJAG_02566":null,"SJAG_02700":null,"SJAG_03011":null,"SJAG_03025":null,"SJAG_03086":null,"SJAG_03088":null,"SJAG_03119":null,"SJAG_03229":null,"SJAG_03380":null,"SJAG_03455":null,"SJAG_03465":null,"SJAG_03703":null,"SJAG_04001":null,"SJAG_04100":null,"SJAG_04141":null,"SJAG_04498":null,"SJAG_04621":null,"SJAG_04703":null,"SJAG_04886":null,"SJAG_04982":null},"genotype_count":0,"in_subsets":["mf_goslim_japonicus"],"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0008092"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488","GO:0008092"],"is_obsolete":false,"name":"actin binding","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000043":null},"synonyms":[{"name":"membrane associated actin binding","type":"narrow"}],"termid":"GO:0003779","terms_by_termid":{"GO:0003779":null,"GO:0003785":null,"GO:0003786":null,"GO:0051015":null}}


id: PBO:0050896
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intermediate filament family orphan 1","termid":"PBO:0050896"}


id: PR:P0CT78
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpl1102 gene.","definition_xrefs":["UniProtKB:P0CT78","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L11-B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC17G9.10","synonyms":[{"name":"Spom972h-rpl1102","type":"exact"}],"termid":"PR:P0CT78"}


id: PBO:0031407
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-spheroid_vegetative_cell","termid":"PBO:0031407"}


id: GO:0002221
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by a ligand binding to a pattern recognition receptor (PRR), and ending with the regulation of a downstream cellular process, e.g. transcription. PRRs bind pathogen-associated molecular pattern (PAMPs), structures conserved among microbial species, or damage-associated molecular pattern (DAMPs), endogenous molecules released from damaged cells.","definition_xrefs":["PMID:15199967","GOC:ar","ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"innate immune response-activating signaling pathway","termid":"GO:0002758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"pattern recognition receptor signaling pathway","synonyms":[{"name":"PRR signaling pathway","type":"exact"},{"name":"pathogen receptor signaling pathway","type":"exact"},{"name":"pathogen receptor signalling pathway","type":"exact"}],"termid":"GO:0002221"}


id: GO:0086061
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transmembrane transfer of a sodium ion by a voltage-gated channel through the plasma membrane of a bundle of His cardiac muscle cell contributing to the depolarization phase of an action potential. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded.","definition_xrefs":["GOC:mtg_cardiac_conduct_nov11","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"voltage-gated sodium channel activity involved in cardiac muscle cell action potential","termid":"GO:0086006"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"voltage-gated sodium channel activity involved in bundle of His cell action potential","synonyms":[{"name":"voltage-gated sodium channel activity involved in bundle of His cardiac muscle cell action potential","type":"exact"}],"termid":"GO:0086061"}


id: PBO:0003886
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S9 (predicted)","termid":"PBO:0003886"}


id: PBO:0060894
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuraminidase 3","termid":"PBO:0060894"}


id: PR:O43120
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- uap2 gene.","definition_xrefs":["UniProtKB:O43120","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing factor U2AF-associated protein 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1289.02c","synonyms":[{"name":"Spom972h-uap2","type":"exact"},{"name":"cold sensitive U2 snRNA suppressor 2 homolog (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O43120"}


id: PATO:0001256
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A color consisting of orange color and low brightness.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"orange","termid":"PATO:0000953"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dark orange","termid":"PATO:0001256"}


id: GO:0070901
data:
  {"annotated_genes":["SJAG_00255"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[78476],"is_not":false,"summary":null,"term":"GO:0070901"}]},"cv_name":"biological_process","definition":"The posttranscriptional addition of methyl groups to specific residues in a mitochondrial tRNA molecule.","definition_xrefs":["GOC:mcc","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA methylation","termid":"GO:0030488"},{"relation_name":"is_a","term_name":"mitochondrial tRNA modification","termid":"GO:0070900"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00255":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140053"},{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0006399"}],"interesting_parent_ids":["GO:0010467","GO:0140053","GO:0006399","GO:0008150"],"is_obsolete":false,"name":"mitochondrial tRNA methylation","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0070901","terms_by_termid":{"GO:0070901":null}}


id: SO:0000329
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An mRNA with a plus 2 frameshift.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"plus_2_framshift","termid":"SO:0000869"},{"relation_name":"is_a","term_name":"mRNA_with_frameshift","termid":"SO:0000108"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA_with_plus_2_frameshift","synonyms":[{"name":"mRNA with plus 2 frameshift","type":"exact"}],"termid":"SO:0000329"}


id: MONDO:0019784
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"12q14 microdeletion syndrome is characterized by mild intellectual deficit, failure to thrive, short stature and osteopoikilosis. It has been described in four unrelated patients. The syndrome appears to be caused by a heterozygous deletion at chromosome region 12q14, which was detected in three of the four patients. The deleted region contains the LEMD3 gene: mutations in this gene have already been implicated in osteopoikilosis.","definition_xrefs":["Orphanet:94063"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"excluded_subClassOf","term_name":"obsolete primary bone dysplasia with increased bone density (obsolete MONDO:0019703)","termid":"MONDO:0019703"},{"relation_name":"is_a","term_name":"partial deletion of the long arm of chromosome 12","termid":"MONDO:0016877"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"12q14 microdeletion syndrome","secondary_identifiers":["DECIPHER:76","MEDGEN:930809","GARD:13390","SCTID:719046005","UMLS:C4305140"],"synonyms":[{"name":"Del(12)(q14)","type":"exact"},{"name":"deletion 12q14","type":"exact"},{"name":"monosomy 12q14","type":"exact"},{"name":"osteopoikilosis-short stature-intellectual disability syndrome","type":"exact"}],"termid":"MONDO:0019784","xrefs":{"Monarch":{"xref_id":"0019784"}}}


id: GO:0097100
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to supercoiled DNA. For example, during replication and transcription, template DNA is negatively supercoiled in the receding downstream DNA and positively supercoiled in the approaching downstream DNA.","definition_xrefs":["GOC:pr","Wikipedia:DNA_supercoil","PMID:21345933","GOC:rph","PMID:20723754"],"direct_ancestors":[{"relation_name":"is_a","term_name":"double-stranded DNA binding","termid":"GO:0003690"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003677"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0003677"],"is_obsolete":false,"name":"supercoiled DNA binding","termid":"GO:0097100"}


id: FYPO:0005817
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to one or both ends end of a microtubule does not occur during interphase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to microtubule during mitotic interphase","termid":"FYPO:0005441"},{"relation_name":"is_a","term_name":"abolished protein localization to microtubule plus-end","termid":"FYPO:0005814"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000138","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"abolished protein localization to microtubule plus-end during mitotic interphase","synonyms":[{"name":"abolished protein localisation to microtubule plus-end during mitotic interphase","type":"exact"},{"name":"abolished protein localization to microtubule plus end during mitotic interphase","type":"exact"},{"name":"abolished protein localization to microtubule plus-end during interphase during vegetative growth","type":"exact"},{"name":"abolished protein localization to microtubule plus-end during interphase of mitotic cell cycle","type":"exact"},{"name":"protein localization to microtubule plus-end abolished during mitotic interphase","type":"exact"}],"termid":"FYPO:0005817"}


id: GO:0006488
data:
  {"annotated_genes":["SJAG_00924","SJAG_00334","SJAG_03774","SJAG_03656","SJAG_03311","SJAG_01950","SJAG_02102","SJAG_03764","SJAG_00437","SJAG_04821","SJAG_00747","SJAG_04952","SJAG_04954","SJAG_04363","SJAG_00394","SJAG_03056"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[61723,63621,64613,65847,69469,73473,75357,77097,77591,80381,91490,94263,100147,100357,105375,111470],"is_not":false,"summary":null,"term":"GO:0006488"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of dolichol-linked oligosaccharide, usually by a stepwise addition of glycosyl chains to endoplasmic reticulum membrane-bound dolichol-P.","definition_xrefs":["ISBN:0471331309","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate derivative biosynthetic process","termid":"GO:1901137"},{"relation_name":"part_of","term_name":"protein N-linked glycosylation via asparagine","termid":"GO:0018279"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00334":null,"SJAG_00394":null,"SJAG_00437":null,"SJAG_00747":null,"SJAG_00924":null,"SJAG_01950":null,"SJAG_02102":null,"SJAG_03056":null,"SJAG_03311":null,"SJAG_03656":null,"SJAG_03764":null,"SJAG_03774":null,"SJAG_04363":null,"SJAG_04821":null,"SJAG_04952":null,"SJAG_04954":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006486"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006486"],"is_obsolete":false,"name":"dolichol-linked oligosaccharide biosynthetic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-446193"],"synonyms":[{"name":"N-linked glycan precursor biosynthesis","type":"exact"},{"name":"N-linked glycan precursor biosynthetic process","type":"exact"},{"name":"dolichol-linked oligosaccharide anabolism","type":"exact"},{"name":"dolichol-linked oligosaccharide biosynthesis","type":"exact"},{"name":"dolichol-linked oligosaccharide formation","type":"exact"},{"name":"dolichol-linked oligosaccharide synthesis","type":"exact"},{"name":"oligosaccharide-PP-dolichol assembly","type":"exact"}],"termid":"GO:0006488","terms_by_termid":{"GO:0006488":null}}


id: PBO:0048640
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gap junction protein alpha 10","termid":"PBO:0048640"}


id: PBO:0079241
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetratricopeptide repeat domain 14","termid":"PBO:0079241"}


id: PBO:0034587
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-short_glycerophospholipids","termid":"PBO:0034587"}


id: PBO:0001565
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER to Golgi transport protein Yos1 (predicted)","termid":"PBO:0001565"}


id: PBO:0005904
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA Glutamic acid, mitochondrial","termid":"PBO:0005904"}


id: MOD:01216
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-glutamic acid residue to O5-(carboxamidomethyl)glutamate.","definition_xrefs":["PubMed:12422359","Unimod:4#E","OMSSA:30","PubMed:11510821"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iodoacetamide derivatized residue","termid":"MOD:00397"},{"relation_name":"is_a","term_name":"modified L-glutamic acid residue","termid":"MOD:00906"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iodoacetamide derivatized glutamic acid","synonyms":[{"name":"Carbamidomethyl","type":"related"},{"name":"Iodoacetamide derivative","type":"related"},{"name":"carbamidomethyle","type":"exact"}],"termid":"MOD:01216"}


id: MONDO:0800464
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A group of disorders including Paget disease of bone (PBD), inclusion body myopathy (IBM), and less frequently frontotemporal dementia (FTD) and amyotrophic lateral sclerosis (ALS). Phenotypic presentation and severity are highly variable, and individuals within the same family may present with different associated conditions.","definition_xrefs":["PMID:33145792"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn errors of metabolism","termid":"MONDO:0019052"},{"relation_name":"is_a","term_name":"proteostasis deficiencies","termid":"MONDO:0021179"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0021179"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0021179","MONDO:0005066"],"is_obsolete":false,"name":"SQSTM1-related multisystem proteinopathy","synonyms":[{"name":"SQSTM1-related multisystem proteinopathy","type":"exact"}],"termid":"MONDO:0800464","xrefs":{"Monarch":{"xref_id":"0800464"}}}


id: PBO:0053937
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1237","termid":"PBO:0053937"}


id: PBO:0048622
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GINS complex subunit 3","termid":"PBO:0048622"}


id: MONDO:0011546
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"transposition of the great arteries","termid":"MONDO:0000153"},{"relation_name":"is_a","term_name":"visceral heterotaxy","termid":"MONDO:0018677"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterotaxy, visceral, 2, autosomal","secondary_identifiers":["UMLS:C1415817","OMIM:605376","MEDGEN:237904"],"synonyms":[{"name":"DTGA2","type":"exact"},{"name":"HTX2","type":"related"},{"name":"Htx","type":"related"},{"name":"heterotaxy, visceral, 2, autosomal","type":"exact"},{"name":"transposition of the great arteries, dextro-looped 2","type":"exact"}],"termid":"MONDO:0011546","xrefs":{"Monarch":{"xref_id":"0011546"}}}


id: PR:P78929
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A destrin that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02001","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cofilin (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC20G4.06c","secondary_identifiers":["UniProtKB:P78929"],"synonyms":[{"name":"Spom972h-DSTN","type":"exact"},{"name":"actin-depolymerizing factor 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P78929"}


id: GO:0006329
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete satellite DNA binding (obsolete GO:0006329)","synonyms":[{"name":"satellite DNA binding","type":"exact"}],"termid":"GO:0006329"}


id: PBO:0001138
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA snR39","termid":"PBO:0001138"}


id: GO:0001627
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete leucine-rich G-protein receptor-like receptor activity (obsolete GO:0001627)","synonyms":[{"name":"LGR-like receptor","type":"exact"},{"name":"leucine-rich G protein receptor-like receptor activity","type":"exact"},{"name":"leucine-rich G-protein receptor-like receptor activity","type":"exact"}],"termid":"GO:0001627"}


id: PBO:0025437
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxisomal metabolism disorders","termid":"PBO:0025437"}


id: MONDO:0100425
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any acute myeloid leukemia that has the chromosomal anomaly KRAS gene mutation. (A change in the nucleotide sequence of the KRAS gene.)","definition_xrefs":["NCIT:C41361"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acute myeloid leukemia","termid":"MONDO:0018874"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046","MONDO:0004992"],"is_obsolete":false,"name":"acute myeloid leukemia, KRAS gene mutation","synonyms":[{"name":"AML, KRAS Gene Mutation","type":"exact"},{"name":"AML, KRAS gene mutation","type":"exact"},{"name":"AML, KRAS-2 Gene Mutation","type":"exact"},{"name":"AML, KRAS2 Gene Mutation","type":"exact"},{"name":"AML, c-K-ras Gene Mutation","type":"exact"},{"name":"AML, v-Ki-ras2 Kirsten Rat Sarcoma Viral Oncogene Homolog Gene Mutation","type":"exact"}],"termid":"MONDO:0100425","xrefs":{"Monarch":{"xref_id":"0100425"}}}


id: GO:0140010
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of D-aspartate from one side of a membrane to the other.","definition_xrefs":["GO_REF:0000070","PMID:7914198"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dicarboxylic acid transmembrane transporter activity","termid":"GO:0005310"},{"relation_name":"is_a","term_name":"C4-dicarboxylate transmembrane transporter activity","termid":"GO:0015556"},{"relation_name":"is_a","term_name":"D-amino acid transmembrane transporter activity","termid":"GO:0042943"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"D-aspartate transmembrane transporter activity","termid":"GO:0140010"}


id: PBO:0042234
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin Y like 6 (pseudogene)","termid":"PBO:0042234"}


id: GO:1900811
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of helvolic acid.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid catabolic process","termid":"GO:0006706"},{"relation_name":"is_a","term_name":"ketone catabolic process","termid":"GO:0042182"},{"relation_name":"is_a","term_name":"carboxylic acid catabolic process","termid":"GO:0046395"},{"relation_name":"is_a","term_name":"secondary metabolite catabolic process","termid":"GO:0090487"},{"relation_name":"is_a","term_name":"olefinic compound catabolic process","termid":"GO:0120256"},{"relation_name":"is_a","term_name":"helvolic acid metabolic process","termid":"GO:1900810"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006629","GO:0019748"],"is_obsolete":false,"name":"helvolic acid catabolic process","synonyms":[{"name":"Fumigacin breakdown","type":"related"},{"name":"Fumigacin catabolic process","type":"related"},{"name":"Fumigacin catabolism","type":"related"},{"name":"Fumigacin degradation","type":"related"},{"name":"helvolic acid breakdown","type":"exact"},{"name":"helvolic acid catabolism","type":"exact"},{"name":"helvolic acid degradation","type":"exact"}],"termid":"GO:1900811"}


id: PR:O14047
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A serine/threonine-protein kinase 26 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01777"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein kinase ppk11 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2C4.14c","secondary_identifiers":["UniProtKB:O14047"],"synonyms":[{"name":"Spom972h-STK26","type":"exact"}],"termid":"PR:O14047"}


id: PBO:0074896
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 70B","termid":"PBO:0074896"}


id: MONDO:0002866
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pathological conditions in the duodenum region of the small intestine (intestine, small).","definition_xrefs":["MESH:D004378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"small intestine disorder","termid":"MONDO:0024635"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"duodenal disorder","secondary_identifiers":["ICD9:537.9","SCTID:52182008","UMLS:C0013289","DOID:4072","ICD9:537.89","MEDGEN:8502"],"synonyms":[{"name":"disease of duodenum","type":"exact"},{"name":"disease or disorder of duodenum","type":"exact"},{"name":"disorder of duodenum","type":"exact"},{"name":"duodenum disease","type":"exact"},{"name":"duodenum disease or disorder","type":"exact"},{"name":"duodenum disorder","type":"exact"}],"termid":"MONDO:0002866","xrefs":{"Monarch":{"xref_id":"0002866"}}}


id: GO:0033042
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with soluble umami compounds to initiate a change in cell activity. These receptors are responsible for the sense of umami taste, the savory taste of meats and other foods that are rich in glutamates.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"GPCR taste receptor activity","termid":"GO:0090681"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"umami taste receptor activity","termid":"GO:0033042"}


id: SO:0002028
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An open reading frame that encodes a peptide of less than 100 amino acids.","definition_xrefs":["PMID:24705786","POMBASE:mah","PMID:23970561"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ORF","termid":"SO:0000236"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sORF","synonyms":[{"name":"smORF","type":"exact"},{"name":"small ORF","type":"exact"}],"termid":"SO:0002028"}


id: FYPO:0008083
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which autophagic degradation of the endoplasmic reticulum is abnormal.","direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal macroautophagy","termid":"FYPO:0000163"},{"relation_name":"is_a","term_name":"abnormal cellular component organization","termid":"FYPO:0000335"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abnormal reticulophagy","termid":"FYPO:0008083"}


id: PBO:0017603
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"structure-specific endonuclease catalytic subunit Slx1","termid":"PBO:0017603"}


id: GO:0010325
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of raffinose family oligosaccharides (RFOs, such as raffinose, stachyose, verbascose and other molecules with a higher degree of galactosyl polymerization).","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligosaccharide biosynthetic process","termid":"GO:0009312"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"raffinose family oligosaccharide biosynthetic process","synonyms":[{"name":"raffinose family oligosaccharide biosynthesis","type":"exact"}],"termid":"GO:0010325"}


id: PBO:0039296
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ALG10 alpha-1,2-glucosyltransferase B","termid":"PBO:0039296"}


id: MONDO:0100393
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any acute myeloid leukemia that has the chromosomal anomaly t(8;16). (A cytogenetic abnormality that involves a translocation between chromosomes 8 and 16.)","definition_xrefs":["NCIT:C175583"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acute myeloid leukemia","termid":"MONDO:0018874"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570","MONDO:0004992"],"is_obsolete":false,"name":"acute myeloid leukemia, t(8;16)","synonyms":[{"name":"AML, t(8;16)","type":"exact"}],"termid":"MONDO:0100393","xrefs":{"Monarch":{"xref_id":"0100393"}}}


id: PBO:0052456
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KLF transcription factor 7","termid":"PBO:0052456"}


id: PBO:0001228
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pheochromocytoma","termid":"PBO:0001228"}


id: PBO:0025549
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinetochore protein, CENP-X ortholog, FANCM-MHF complex subunit Mhf2","termid":"PBO:0025549"}


id: PBO:0109348
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"9 [SWVTETVTSGSVGFTTTIATPIGTTAGTVLVDIPTP-consensus] repeats reported (5 copies in reference)","termid":"PBO:0109348"}


id: MONDO:0011381
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Dominant beta-thalassemia is a form of beta-thalassemia resulting in moderate to severe anemia.","definition_xrefs":["Orphanet:231226"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta thalassemia","termid":"MONDO:0019402"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0002280"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0002280"],"is_obsolete":false,"name":"dominant beta-thalassemia","secondary_identifiers":["MEDGEN:347036","SCTID:716682000","DOID:0080770","GARD:17164","MESH:C565834","OMIM:603902","UMLS:C1858990"],"synonyms":[{"name":"beta-thalassemia, dominant inclusion body type","type":"related"},{"name":"dyserythropoietic Anemia, congenital, Irish or Weatherall type","type":"related"},{"name":"inclusion body beta-thalassemia","type":"exact"},{"name":"thalassemia-beta, dominant inclusion-body","type":"exact"}],"termid":"MONDO:0011381","xrefs":{"Monarch":{"xref_id":"0011381"}}}


id: PBO:0030346
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-incomplete,_unequal_mitotic_sister_chromatid_segregation,_with_unseparated_DNA","termid":"PBO:0030346"}


id: PBO:0046835
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fatty acid binding protein 5 pseudogene 8","termid":"PBO:0046835"}


id: PBO:0028443
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_DNA_double-strand_break_formation_at_mating-type_locus","termid":"PBO:0028443"}


id: PBO:0042466
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell division cycle associated 4 pseudogene 3","termid":"PBO:0042466"}


id: PBO:0047811
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"forkhead box M1","termid":"PBO:0047811"}


id: GO:1990723
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Cytoplasm situated in close proximity to a nuclear pore complex.","definition_xrefs":["PMID:9398662"],"direct_ancestors":[{"relation_name":"is_a","term_name":"perinuclear region of cytoplasm","termid":"GO:0048471"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"cytoplasmic periphery of the nuclear pore complex","synonyms":[{"name":"associated with the nuclear pore","type":"related"}],"termid":"GO:1990723"}


id: MONDO:0014550
data:
  {"annotated_genes":["SJAG_04781","SJAG_04901"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85787,85788],"is_not":false,"summary":null,"term":"MONDO:0014550"}]},"cv_name":"mondo","definition":"Any long QT syndrome in which the cause of the disease is a mutation in the CALM2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"long QT syndrome","termid":"MONDO:0002442"},{"relation_name":"is_a","term_name":"familial long QT syndrome","termid":"MONDO:0019171"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04781":null,"SJAG_04901":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"long QT syndrome 15","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:864132","OMIM:616249","GARD:16074","UMLS:C4015695","DOID:0110656"],"synonyms":[{"name":"CALM2 long QT syndrome","type":"exact"},{"name":"LQT15","type":"exact"},{"name":"long QT syndrome 15","type":"exact"},{"name":"long QT syndrome caused by mutation in CALM2","type":"exact"},{"name":"long QT syndrome type 15","type":"exact"}],"termid":"MONDO:0014550","terms_by_termid":{"MONDO:0014550":null},"xrefs":{"Monarch":{"xref_id":"0014550"}}}


id: PBO:0065283
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich and Gla domain 3","termid":"PBO:0065283"}


id: PBO:0071179
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L23a pseudogene 20","termid":"PBO:0071179"}


id: GO:0098591
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The leaflet the apical region of the plasma membrane that faces away from the cytoplasm and any proteins embedded or anchored in it or attached to its surface.","definition_xrefs":["GOC:dos","GOC:ab"],"direct_ancestors":[{"relation_name":"is_a","term_name":"external side of plasma membrane","termid":"GO:0009897"},{"relation_name":"part_of","term_name":"apical plasma membrane","termid":"GO:0016324"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"part_of","termid":"GO:0009986"}],"interesting_parent_ids":["GO:0005575","GO:0009986","GO:0005886"],"is_obsolete":false,"name":"external side of apical plasma membrane","termid":"GO:0098591"}


id: PBO:0072657
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retrotransposon Gag like 9","termid":"PBO:0072657"}


id: MONDO:0001443
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The formation of dense connective tissue in the tympanic membrane that does not necessarily cause or lead to loss of hearing.","definition_xrefs":["MESH:D063371"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tympanic membrane disorder","termid":"MONDO:0003648"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tympanosclerosis","secondary_identifiers":["DOID:1214","ICD10CM:H74.0","icd11.foundation:28175464","UMLS:C0395887","ICD9:385.00","MEDGEN:473094","SCTID:23606001","ICD9:385.09"],"termid":"MONDO:0001443","xrefs":{"Monarch":{"xref_id":"0001443"}}}


id: PBO:0073598
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SHQ1, H/ACA ribonucleoprotein assembly factor","termid":"PBO:0073598"}


id: MONDO:0030525
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"epidermolysis bullosa simplex","termid":"MONDO:0017610"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"epidermolysis bullosa simplex 2B, generalized intermediate","secondary_identifiers":["MEDGEN:1794219","OMIM:619588","UMLS:C5562009"],"synonyms":[{"name":"EBS2B","type":"exact"}],"termid":"MONDO:0030525","xrefs":{"Monarch":{"xref_id":"0030525"}}}


id: PBO:0069338
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 598, pseudogene","termid":"PBO:0069338"}


id: PBO:0073987
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 25 member 1 pseudogene 1","termid":"PBO:0073987"}


id: FYPO:0004060
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which endocytosis does not occur during meiotic interphase II, i.e. the phase between the end of meiosis I cytokinesis the beginning of meiosis II prophase. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein.","definition_xrefs":["PomBase:mah","GO:0044844"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal endocytosis","termid":"FYPO:0003886"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0000138","FYPO:0001985"],"is_obsolete":false,"name":"abolished endocytosis during meiotic interphase II","synonyms":[{"name":"abolished actin-mediated endocytosis during meiotic interphase II","type":"exact"},{"name":"abolished protein internalization during meiotic interphase II","type":"narrow"},{"name":"absent endocytosis during meiotic interphase II","type":"exact"},{"name":"endocytosis abolished during meiotic interphase II","type":"exact"}],"termid":"FYPO:0004060"}


id: GO:0140456
data:
  {"annotated_genes":["SJAG_00794"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95674],"is_not":false,"summary":null,"term":"GO:0140456"}]},"cv_name":"biological_process","definition":"The release of duplicated meiotic spindle pole bodies (SPBs).","definition_xrefs":["PMID:31532702"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spindle pole body separation","termid":"GO:0110100"},{"relation_name":"is_a","term_name":"meiotic cell cycle process","termid":"GO:1903046"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00794":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0007010"},{"rel_name":"part_of","termid":"GO:0000226"}],"interesting_parent_ids":["GO:0000226","GO:0007049","GO:0008150","GO:0007010"],"is_obsolete":false,"name":"initial meiotic spindle pole body separation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"initial spindle pole body separation involved in meiosis I","type":"exact"},{"name":"meiotic spindle pole body duplication","type":"exact"}],"termid":"GO:0140456","terms_by_termid":{"GO:0140456":null}}


id: GO:0104005
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A function that was not selected for in the evolution of an organism, but arises from co-option by another organism, e.g. a human protein used as a virus receptor.","definition_xrefs":["GOC:pdt"],"gene_count":0,"genotype_count":0,"name":"obsolete hijacked molecular function (obsolete GO:0104005)","termid":"GO:0104005"}


id: GO:0001517
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + N-acetyl-D-glucosamine = adenosine 3',5'-bisphosphate + N-acetyl-D-glucosamine 6-sulfate.","definition_xrefs":["GOC:ai","GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfotransferase activity","termid":"GO:0008146"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016782"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016782","GO:0016740"],"is_obsolete":false,"name":"N-acetylglucosamine 6-O-sulfotransferase activity","secondary_identifiers":["Reactome:R-HSA-3656269","Reactome:R-HSA-6786012","Reactome:R-HSA-2046222"],"synonyms":[{"name":"N-acetylglucosamine 6-O-sulphotransferase activity","type":"exact"}],"termid":"GO:0001517"}


id: PBO:0048841
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyceronephosphate O-acyltransferase","termid":"PBO:0048841"}


id: PBO:0114949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-CHY type zinc finger protein involved in rescue of stalled ribosomes","termid":"PBO:0114949"}


id: GO:0042297
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A behavioral process whose outcome is a relatively long-lasting behavioral change whereby an organism modifies innate vocalizations to imitate sounds produced by others.","definition_xrefs":["GOC:dos","GOC:BHF","GOC:rl","PMID:16418265","PMID:17035521"],"direct_ancestors":[{"relation_name":"is_a","term_name":"auditory behavior","termid":"GO:0031223"},{"relation_name":"is_a","term_name":"imitative learning","termid":"GO:0098596"},{"relation_name":"is_a","term_name":"learned vocalization behavior or vocal learning","termid":"GO:0098598"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"vocal learning","secondary_identifiers":["Wikipedia:Vocal_learning"],"termid":"GO:0042297"}


id: GO:1905306
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cardiac myofibril assembly.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","GOC:rl","PMID:16151019","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of developmental process","termid":"GO:0051094"},{"relation_name":"is_a","term_name":"positive regulation of cytoskeleton organization","termid":"GO:0051495"},{"relation_name":"is_a","term_name":"positive regulation of organelle assembly","termid":"GO:1902117"},{"relation_name":"is_a","term_name":"positive regulation of supramolecular fiber organization","termid":"GO:1902905"},{"relation_name":"is_a","term_name":"regulation of cardiac myofibril assembly","termid":"GO:1905304"},{"relation_name":"positively_regulates","term_name":"cardiac myofibril assembly","termid":"GO:0055003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0030036"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0030036"},{"rel_name":"positively_regulates","termid":"GO:0007010"},{"rel_name":"regulates","termid":"GO:0007010"}],"interesting_parent_ids":["GO:0007010","GO:0008150","GO:0030036","GO:0044085"],"is_obsolete":false,"name":"positive regulation of cardiac myofibril assembly","synonyms":[{"name":"activation of cardiac myofibril assembly","type":"narrow"},{"name":"activation of cardiac myofibril development","type":"narrow"},{"name":"activation of cardiac myofibril morphogenesis","type":"narrow"},{"name":"activation of heart myofibril assembly","type":"related"},{"name":"positive regulation of cardiac myofibril development","type":"exact"},{"name":"positive regulation of cardiac myofibril morphogenesis","type":"exact"},{"name":"positive regulation of heart myofibril assembly","type":"related"},{"name":"up regulation of cardiac myofibril assembly","type":"exact"},{"name":"up regulation of cardiac myofibril development","type":"exact"},{"name":"up regulation of cardiac myofibril morphogenesis","type":"exact"},{"name":"up regulation of heart myofibril assembly","type":"related"},{"name":"up-regulation of cardiac myofibril assembly","type":"exact"},{"name":"up-regulation of cardiac myofibril development","type":"exact"},{"name":"up-regulation of cardiac myofibril morphogenesis","type":"exact"},{"name":"up-regulation of heart myofibril assembly","type":"related"},{"name":"upregulation of cardiac myofibril assembly","type":"exact"},{"name":"upregulation of cardiac myofibril development","type":"exact"},{"name":"upregulation of cardiac myofibril morphogenesis","type":"exact"},{"name":"upregulation of heart myofibril assembly","type":"related"}],"termid":"GO:1905306"}


id: PBO:0091626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"formamidase-like protein, implicated in cellular detoxification","termid":"PBO:0091626"}


id: GO:0000295
data:
  {"annotated_genes":["SJAG_03334","SJAG_00612","SJAG_04328","SJAG_02050"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[101723],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046964"},{"annotations":[101724],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902557"},{"annotations":[58934],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005471"},{"annotations":[103220],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140987"},{"annotations":[76112],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051724"}]},"cv_name":"molecular_function","definition":"Enables the transfer of adenine nucleotides (AMP, ADP, and ATP) from one side of a membrane to the other.","definition_xrefs":["PMID:11566870"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleotide transmembrane transporter activity","termid":"GO:0015216"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00612":null,"SJAG_02050":null,"SJAG_03334":null,"SJAG_04328":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"adenine nucleotide transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-389652"],"termid":"GO:0000295","terms_by_termid":{"GO:0005471":null,"GO:0046964":null,"GO:0051724":null,"GO:0140987":null,"GO:1902557":null}}


id: MONDO:0014368
data:
  {"annotated_genes":["SJAG_02194"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86795],"is_not":false,"summary":null,"term":"MONDO:0014368"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"familial melanoma","termid":"MONDO:0018961"},{"relation_name":"excluded_subClassOf","term_name":"susceptibility to familial cutaneous melanoma","termid":"MONDO:0024462"},{"relation_name":"is_a","term_name":"susceptibility to familial cutaneous melanoma","termid":"MONDO:0024462"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02194":null},"genotype_count":0,"is_obsolete":false,"name":"tumor predisposition syndrome 3","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:616568","GARD:18582","MEDGEN:862913","OMIM:615848","UMLS:C4014476"],"synonyms":[{"name":"CMM10","type":"exact"},{"name":"GLM9","type":"exact"},{"name":"glioma susceptibility 9","type":"exact"},{"name":"glioma susceptibility type 9","type":"exact"},{"name":"malignant glioma caused by mutation in POT1","type":"exact"},{"name":"melanoma, cutaneous malignant, susceptibility to, 10","type":"exact"},{"name":"melanoma, cutaneous malignant, susceptibility to, type 10","type":"exact"},{"name":"susceptibility to cutaneous malignant melanoma 10","type":"exact"}],"termid":"MONDO:0014368","terms_by_termid":{"MONDO:0014368":null},"xrefs":{"Monarch":{"xref_id":"0014368"}}}


id: PBO:0003140
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial translation initiation factor IF-2Mt (predicted)","termid":"PBO:0003140"}


id: MONDO:0005997
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Narrowing or stricture of the tricuspid orifice of the heart.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tricuspid valve disorder","termid":"MONDO:0000471"},{"relation_name":"is_a","term_name":"aortic disorder","termid":"MONDO:0005561"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"tricuspid valve stenosis","secondary_identifiers":["DOID:4078","icd11.foundation:442626161","EFO:0007525","HP:0010446","MEDGEN:21678","MESH:D014264","NANDO:2200300","NCIT:C50783","SCTID:49915006","UMLS:C0040963"],"synonyms":[{"name":"tricuspid stenosis","type":"exact"}],"termid":"MONDO:0005997","xrefs":{"Monarch":{"xref_id":"0005997"}}}


id: FYPO:0004055
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the nucleus is decreased during a cellular response to salt stress.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to nucleus during cellular response to osmotic stress","termid":"FYPO:0006743"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased protein localization to nucleus during cellular response to salt stress","synonyms":[{"name":"decreased protein localisation to nucleus during cellular response to salt stress","type":"exact"},{"name":"decreased protein localization to nucleus during cellular response to salt stress during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to nucleus during cellular response to salt stress during vegetative growth","type":"exact"},{"name":"decreased protein localization to nucleus during salt stress","type":"exact"},{"name":"reduced protein localization to nucleus during cellular response to salt stress","type":"exact"}],"termid":"FYPO:0004055"}


id: GO:0071276
data:
  {"annotated_genes":["SJAG_03497","SJAG_01344","SJAG_02599","SJAG_01351","SJAG_00044","SJAG_04516","SJAG_00988"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89244],"is_not":false,"summary":null,"term":"GO:0071276"},{"annotations":[108808,71233,93671,118588,97408,97370],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0098849"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to cadmium ion","termid":"GO:0046686"},{"relation_name":"is_a","term_name":"cellular response to metal ion","termid":"GO:0071248"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00044":null,"SJAG_00988":null,"SJAG_01344":null,"SJAG_01351":null,"SJAG_02599":null,"SJAG_03497":null,"SJAG_04516":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to cadmium ion","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"cellular response to cadmium","type":"exact"}],"termid":"GO:0071276","terms_by_termid":{"GO:0071276":null,"GO:0098849":null}}


id: PBO:0028482
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination,_without_cell_division,_mononucleate_cell_with_elongated_germ_tube","termid":"PBO:0028482"}


id: MONDO:0006145
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A slow-growing malignant bone tumor arising from the remnants of the notochord and occurring in the base of the skull. The tumor is characterized by a lobulated growth pattern, myxoid stroma formation, and the presence of physaliphorous cells and cartilage.","definition_xrefs":["NCIT:C6902"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chordoma","termid":"MONDO:0008978"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chondroid chordoma","secondary_identifiers":["EFO:1000174","DOID:4152","ICDO:9371/3","MEDGEN:224768","UMLS:C1266173"],"synonyms":[{"name":"chondroid chordoma","type":"exact"},{"name":"chondroid chordoma (morphologic abnormality)","type":"exact"}],"termid":"MONDO:0006145","xrefs":{"Monarch":{"xref_id":"0006145"}}}


id: FYPO:0001325
data:
  {"alleles_by_uniquename":{"SJAG_01956:allele-1":{"allele_type":"amino_acid_mutation","description":"E405K ts","gene_uniquename":"SJAG_01956","name":"nuc2-1051","uniquename":"SJAG_01956:allele-1"},"SJAG_03351:allele-1":{"allele_type":"amino_acid_mutation","description":"A186T ts","gene_uniquename":"SJAG_03351","name":"cut23-415","uniquename":"SJAG_03351:allele-1"},"SJAG_03575:allele-1":{"allele_type":"amino_acid_mutation","description":"E548K ts","gene_uniquename":"SJAG_03575","name":"apc2-361","uniquename":"SJAG_03575:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[119893,119892,119894],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001327"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of protein measured in a cell differs from normal when the cell is in the vegetative growth phase of the life cycle. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered protein level","termid":"FYPO:0000834"},{"relation_name":"is_a","term_name":"altered level of substance in cell during vegetative growth","termid":"FYPO:0001323"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01956":null,"SJAG_03198":null,"SJAG_03351":null,"SJAG_03575":null},"genotype_count":3,"genotypes_by_uniquename":{"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"apc2-361(E548K ts)","display_uniquename":"apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03575:allele-1","expression":"Not assayed or wild type"}]}]},"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cut23-415(A186T ts)","display_uniquename":"cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03351:allele-1","expression":"Not assayed or wild type"}]}]},"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"nuc2-1051(E405K ts)","display_uniquename":"nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01956:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0006551","FYPO:0001320"],"is_obsolete":false,"name":"altered protein level during vegetative growth","references_by_uniquename":{"PMID:23786411":null},"single_locus_annotated_genes":["SJAG_03575","SJAG_01956","SJAG_03351"],"single_locus_genotype_uniquenames":["apc2-361-E548K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","cut23-415-A186T_ts-amino_acid_mutation-expression-not_assayed_or_wild_type","nuc2-1051-E405K_ts-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"abnormal protein level during vegetative growth","type":"exact"},{"name":"altered cellular protein level during vegetative growth","type":"exact"},{"name":"altered protein level during mitotic cell cycle","type":"related"}],"termid":"FYPO:0001325","terms_by_termid":{"FYECO:0000006":null,"FYECO:0000137":null,"FYPO:0001327":null}}


id: GO:0015283
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. This term was not defined before being made obsolete.","definition_xrefs":["ISBN:0815340729","GOC:mtg_transport"],"gene_count":0,"genotype_count":0,"name":"obsolete apoptogenic cytochrome c release channel activity (obsolete GO:0015283)","synonyms":[{"name":"Bcl-2","type":"narrow"},{"name":"apoptogenic cytochrome c release channel activity","type":"exact"}],"termid":"GO:0015283"}


id: GO:0046607
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the centrosome cycle.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of centrosome cycle","termid":"GO:0046605"},{"relation_name":"is_a","term_name":"positive regulation of cytoskeleton organization","termid":"GO:0051495"},{"relation_name":"is_a","term_name":"positive regulation of cell cycle process","termid":"GO:0090068"},{"relation_name":"positively_regulates","term_name":"centrosome cycle","termid":"GO:0007098"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"positively_regulates","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007010"},{"rel_name":"positively_regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0007049","GO:0007010"],"is_obsolete":false,"name":"positive regulation of centrosome cycle","synonyms":[{"name":"activation of centrosome cycle","type":"narrow"},{"name":"stimulation of centrosome cycle","type":"narrow"},{"name":"up regulation of centrosome cycle","type":"exact"},{"name":"up-regulation of centrosome cycle","type":"exact"},{"name":"upregulation of centrosome cycle","type":"exact"}],"termid":"GO:0046607"}


id: MONDO:0020491
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A developmental brain abnormality characterized by atypical migration of neurons during cortical development.","definition_xrefs":["NCIT:C116933"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"congenital nervous system disorder","termid":"MONDO:0002320"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"subcortical band heterotopia","secondary_identifiers":["MEDGEN:336288","GARD:1904","icd11.foundation:525786944","NANDO:1201070","UMLS:C1848201","Orphanet:99796","DOID:0111169"],"synonyms":[{"name":"Double cortex","type":"related"},{"name":"HeCo","type":"exact"},{"name":"band heterotopia","type":"exact"},{"name":"double cortex syndrome","type":"exact"},{"name":"familial band heterotopia","type":"related"},{"name":"heterotopic cortex","type":"exact"},{"name":"subcortical laminar heterotopia","type":"exact"}],"termid":"MONDO:0020491","xrefs":{"Monarch":{"xref_id":"0020491"}}}


id: GO:0003196
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process pertaining to the initial formation of the ventriculo bulbo valve from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heart valve formation","termid":"GO:0003188"},{"relation_name":"part_of","term_name":"ventriculo bulbo valve morphogenesis","termid":"GO:0003187"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ventriculo bulbo valve formation","termid":"GO:0003196"}


id: GO:0044338
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes involved in mesenchymal stem cell differentiation.","definition_xrefs":["GOC:jl","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"canonical Wnt signaling pathway","termid":"GO:0060070"},{"relation_name":"part_of","term_name":"mesenchymal stem cell differentiation","termid":"GO:0072497"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"canonical Wnt signaling pathway involved in mesenchymal stem cell differentiation","synonyms":[{"name":"canonical Wnt receptor signaling pathway involved in mesenchymal stem cell differentiation","type":"exact"},{"name":"canonical Wnt receptor signalling pathway involved in mesenchymal stem cell differentiation","type":"exact"},{"name":"canonical Wnt-activated signaling pathway involved in mesenchymal stem cell differentiation","type":"exact"}],"termid":"GO:0044338"}


id: PBO:0047467
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Fc receptor like 6 pseudogene 1","termid":"PBO:0047467"}


id: GO:0030474
data:
  {"annotated_genes":["SJAG_03544","SJAG_01760","SJAG_04003","SJAG_03200","SJAG_04558"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[113024,113225,107797,115507,90491],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903087"}]},"cv_name":"biological_process","definition":"Construction of a new spindle pole body.","definition_xrefs":["GOC:clt"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component assembly","termid":"GO:0022607"},{"relation_name":"is_a","term_name":"spindle pole body organization","termid":"GO:0051300"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01760":null,"SJAG_03200":null,"SJAG_03544":null,"SJAG_04003":null,"SJAG_04558":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0000226"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007010"}],"interesting_parent_ids":["GO:0008150","GO:0007010","GO:0000226","GO:0007049","GO:0044085"],"is_obsolete":false,"name":"spindle pole body duplication","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0007103","GO:0031046"],"synonyms":[{"name":"spindle pole body assembly","type":"exact"},{"name":"spindle pole body biogenesis","type":"exact"},{"name":"spindle pole body biosynthesis","type":"exact"},{"name":"spindle pole body duplication associated with nuclear envelope","type":"exact"},{"name":"spindle pole body duplication in cytoplasm","type":"exact"},{"name":"spindle pole body formation","type":"exact"},{"name":"spindle pole body replication","type":"exact"}],"termid":"GO:0030474","terms_by_termid":{"GO:1903087":null}}


id: MONDO:0020677
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hearing loss disorder","termid":"MONDO:0005365"},{"relation_name":"is_a","term_name":"acute disease","termid":"MONDO:0020683"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sudden hearing loss disorder","secondary_identifiers":["SCTID:79471008","MEDGEN:41426","UMLS:C0011057"],"termid":"MONDO:0020677","xrefs":{"Monarch":{"xref_id":"0020677"}}}


id: GO:0052690
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2,3,6-trichlorohydroquinone + 2 glutathione = 2,6-dichlorohydroquinone + glutathione disulfide + HCl.","definition_xrefs":["PMID:1459949","RHEA:56832"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond","termid":"GO:0046992"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"trichloro-p-hydroquinone reductive dehalogenase activity","secondary_identifiers":["UM-BBD_reactionID:r0315"],"synonyms":[{"name":"pentaerythritol tetranitrate reductase activity","type":"related"},{"name":"tetrachlorohydroquinone reductive dehalogenase activity","type":"related"},{"name":"trichlorohydroquinone reductive dehalogenase activity","type":"exact"},{"name":"xenobiotic reductase activity","type":"broad"}],"termid":"GO:0052690"}


id: MONDO:0800391
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inherited retinopathy caused by bi-allelic variants in the EYS gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited retinal dystrophy","termid":"MONDO:0019118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"EYS-related retinopathy","termid":"MONDO:0800391","xrefs":{"Monarch":{"xref_id":"0800391"}}}


id: GO:0018009
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The covalent attachment of a palmitoyl group to a nitrogen (N) atom in an N-terminal cysteine residue to form N-palmitoyl-L-cysteine.","definition_xrefs":["RESID:AA0060"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-terminal protein palmitoylation","termid":"GO:0006500"},{"relation_name":"is_a","term_name":"peptidyl-cysteine modification","termid":"GO:0018198"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0042158"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0042158"],"is_obsolete":false,"name":"N-terminal peptidyl-L-cysteine N-palmitoylation","termid":"GO:0018009"}


id: PATO:0001410
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel.","definition_xrefs":["Biology-online:Biology-online"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"striated","termid":"PATO:0001410"}


id: PBO:0034166
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-axon_synapses_in","termid":"PBO:0034166"}


id: PBO:0082356
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Atypical protein kinase; along with paralog, ALK2, required for proper spindle positioning and nuclear segregation following mitotic arrest, proper organization of cell polarity factors in mitosis, proper localization of formins and polarity factors, and survival in cells that activate spindle assembly checkpoint; regulates the morphogenesis checkpoint in response to polarity insults through inactivation of Mih1p; phosphorylated in response to DNA damage; similar to mammalian haspins","termid":"PBO:0082356"}


id: PBO:0079480
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"taxilin beta","termid":"PBO:0079480"}


id: GO:0006635
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A fatty acid oxidation process that results in the complete oxidation of a long-chain fatty acid. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and occurs by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A; the cycle continues until only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively).","definition_xrefs":["GOC:mah","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid catabolic process","termid":"GO:0009062"},{"relation_name":"is_a","term_name":"fatty acid oxidation","termid":"GO:0019395"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"fatty acid beta-oxidation","secondary_identifiers":["Reactome:R-HSA-77289"],"termid":"GO:0006635"}


id: GO:0098717
data:
  {"annotated_genes":["SJAG_05175"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72892],"is_not":false,"summary":null,"term":"GO:0098717"}]},"cv_name":"biological_process","definition":"The directed movement of pantothenate from outside of a cell, across the plasma membrane and into the cytosol.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pantothenate transmembrane transport","termid":"GO:0015887"},{"relation_name":"is_a","term_name":"import across plasma membrane","termid":"GO:0098739"}],"gene_count":1,"genes_by_uniquename":{"SJAG_05175":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810","GO:0055085"],"is_obsolete":false,"name":"pantothenate import across plasma membrane","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["GO:1901688","GO:0044755"],"synonyms":[{"name":"pantothenate import","type":"related"},{"name":"pantothenate import into cell","type":"exact"}],"termid":"GO:0098717","terms_by_termid":{"GO:0098717":null}}


id: GO:0003136
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any canonical Wnt signaling that decreases the rate, frequency or extent of heart induction.","definition_xrefs":["PMID:19862329","GOC:mtg_heart"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of heart induction by canonical Wnt signaling pathway (obsolete GO:0003136)","synonyms":[{"name":"negative regulation of cardioblast cell fate specification by Wnt receptor signaling pathway","type":"exact"},{"name":"negative regulation of heart induction by canonical Wnt receptor signaling pathway","type":"exact"},{"name":"negative regulation of heart induction by canonical Wnt receptor signalling pathway","type":"exact"},{"name":"negative regulation of heart induction by canonical Wnt-activated signaling pathway","type":"exact"}],"termid":"GO:0003136"}


id: FYPO:0003690
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which a cell population does not grow in a medium containing glycerol and ethanol as the carbon sources.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cell population growth on glycerol/ethanol carbon source","termid":"FYPO:0000442"},{"relation_name":"is_a","term_name":"abolished vegetative cell population growth","termid":"FYPO:0001575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002060"}],"interesting_parent_ids":["FYPO:0002057","FYPO:0002060","FYPO:0001985","FYPO:0000139","FYPO:0002058","FYPO:0000003","FYPO:0005447"],"is_obsolete":false,"name":"abolished cell population growth on glycerol/ethanol carbon source","synonyms":[{"name":"abolished growth on glycerol/ethanol carbon source","type":"broad"},{"name":"abolished vegetative cell population growth on glycerol/ethanol carbon source","type":"exact"},{"name":"cell population growth on glycerol/ethanol carbon source abolished","type":"exact"}],"termid":"FYPO:0003690"}


id: GO:0110095
data:
  {"annotated_genes":["SJAG_02010","SJAG_02960","SJAG_05256","SJAG_01457"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[113117],"is_not":false,"summary":null,"term":"GO:0110095"},{"annotations":[105418],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140041"},{"annotations":[78518,95897],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046294"}]},"cv_name":"biological_process","definition":"Any process carried out at the cellular level that reduces or removes the toxicity of an aldehyde. These may include transport of aldehydes away from sensitive areas and to compartments or complexes whose purpose is sequestration of the toxic substance.","definition_xrefs":["GOC:vw","PMID:25656103"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular detoxification","termid":"GO:1990748"},{"relation_name":"part_of","term_name":"cellular response to aldehyde","termid":"GO:0110096"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01457":null,"SJAG_02010":null,"SJAG_02960":null,"SJAG_05256":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098754"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0098754"],"is_obsolete":false,"name":"cellular detoxification of aldehyde","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0110095","terms_by_termid":{"GO:0046294":null,"GO:0110095":null,"GO:0140041":null}}


id: PBO:0061093
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NK6 homeobox 2","termid":"PBO:0061093"}


id: PBO:0073413
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SET pseudogene 17","termid":"PBO:0073413"}


id: PBO:0084991
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADPH-dependent alpha-keto amide reductase; reduces aromatic alpha-keto amides, aliphatic alpha-keto esters, and aromatic alpha-keto esters; member of the aldo-keto reductase (AKR) family; protein abundance increases in response to DNA replication stress","termid":"PBO:0084991"}


id: GO:0003794
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete acute-phase response protein activity (obsolete GO:0003794)","synonyms":[{"name":"acute-phase response protein activity","type":"exact"}],"termid":"GO:0003794"}


id: MONDO:0003446
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign neoplasm arising from the sweat glands. It presents as a slow growing cystic nodular lesion most often in the skin of the vulva and the perianal region. It is characterized by the presence of cystic and large papillary structures. The papillary structures contain connective tissue and are covered by two layers of epithelium. Complete excision is curative.","definition_xrefs":["NCIT:C4171"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hidradenoma","termid":"MONDO:0002805"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"papillary hidradenoma","secondary_identifiers":["DOID:5439","ICDO:8405/0","MEDGEN:87221","UMLS:C0334348","SCTID:307597000"],"synonyms":[{"name":"hidradenoma papilliferum","type":"exact"}],"termid":"MONDO:0003446","xrefs":{"Monarch":{"xref_id":"0003446"}}}


id: MONDO:0009653
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A lysosomal storage disease characterized clinically by psychomotor retardation and visual abnormalities including corneal clouding, retinal degeneration, or strabismus.","definition_xrefs":["Orphanet:578"],"direct_ancestors":[{"relation_name":"is_a","term_name":"eye disorder","termid":"MONDO:0005328"},{"relation_name":"is_a","term_name":"familial mucolipidosis","termid":"MONDO:0031422"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002561"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0002561","MONDO:0005328","MONDO:0005066"],"is_obsolete":false,"name":"mucolipidosis type IV","secondary_identifiers":["OMIM:252650","NCIT:C84896","MEDGEN:68663","DOID:0080490","GTR:AN1125033","SCTID:725296006","SCTID:111384001","UMLS:C0238286","GTR:AN1124590","GARD:94","GTR:AN1148743","GTR:AN1125032"],"synonyms":[{"name":"Berman syndrome","type":"related"},{"name":"ML 4","type":"related"},{"name":"ML IV","type":"exact"},{"name":"ML4","type":"related"},{"name":"MLIV","type":"exact"},{"name":"Mucolipidosis IV","type":"exact"},{"name":"ganglioside neuraminidase deficiency","type":"related"},{"name":"ganglioside sialidase deficiency","type":"related"},{"name":"mucolipidosis 4","type":"related"},{"name":"mucolipidosis IV","type":"related"},{"name":"mucolipidosis type 4","type":"exact"},{"name":"mucolipidosis type IV","type":"exact"},{"name":"sialolipidosis","type":"related"}],"termid":"MONDO:0009653","xrefs":{"Monarch":{"xref_id":"0009653"}}}


id: MONDO:0019976
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Conditions characterized by persistent brain damage or dysfunction as sequelae of cranial trauma. This disorder may result from diffuse axonal injury; intracranial hemorrhages; brain edema; and other conditions. Clinical features may include dementia; focal neurologic deficits; persistent vegetative state; akinetic mutism; or coma.","definition_xrefs":["MESH:D020208"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dementia","termid":"MONDO:0001627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002039"}],"interesting_parent_ids":["MONDO:0002039"],"is_obsolete":false,"name":"dementia pugilistica","secondary_identifiers":["MEDGEN:508441","Orphanet:97353","SCTID:230283005","DOID:0081291","GARD:19371","UMLS:C0149843"],"synonyms":[{"name":"Boxer's dementia","type":"exact"},{"name":"chronic traumatic encephalopathy","type":"exact"},{"name":"punch-drunk syndrome","type":"exact"}],"termid":"MONDO:0019976","xrefs":{"Monarch":{"xref_id":"0019976"}}}


id: GO:0047952
data:
  {"annotated_genes":["SJAG_00409","SJAG_01012"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[62976,69614],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0141152"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: sn-glycerol 3-phosphate + NAD(P)+ = glycerone phosphate + NAD(P)H + H+.","definition_xrefs":["EC:1.1.1.94","PMID:28326"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00409":null,"SJAG_01012":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"glycerol-3-phosphate dehydrogenase [NAD(P)+] activity","references_by_uniquename":{"GO_REF:0000003":null},"secondary_identifiers":["GO:0004367","Reactome:R-HSA-75889","GO:0106257","MetaCyc:GLYC3PDEHYDROGBIOSYN-RXN","GO:0036439"],"synonyms":[{"name":"L-alpha-glycerol phosphate dehydrogenase activity","type":"broad"},{"name":"L-alpha-glycerophosphate dehydrogenase activity","type":"broad"},{"name":"L-glycerol phosphate dehydrogenase activity","type":"broad"},{"name":"L-glycerol-3-phosphate:NAD(P) oxidoreductase activity","type":"related"},{"name":"L-glycerophosphate dehydrogenase activity","type":"broad"},{"name":"glycerol phosphate dehydrogenase (nicotinamide adenine dinucleotide (phosphate)) activity","type":"exact"},{"name":"glycerol-3-phosphate dehydrogenase (NAD(P)+) activity","type":"exact"},{"name":"hydroglycerophosphate dehydrogenase activity","type":"broad"},{"name":"sn-glycerol-3-phosphate:NAD(P)+ 2-oxidoreductase activity","type":"related"}],"termid":"GO:0047952","terms_by_termid":{"GO:0141152":null}}


id: GO:0009753
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to hormone","termid":"GO:0009725"},{"relation_name":"is_a","term_name":"response to fatty acid","termid":"GO:0070542"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to jasmonic acid","synonyms":[{"name":"response to jasmonic acid stimulus","type":"exact"}],"termid":"GO:0009753"}


id: PBO:0054926
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2340","termid":"PBO:0054926"}


id: PBO:0040797
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"basic helix-loop-helix family member a15","termid":"PBO:0040797"}


id: MONDO:0020209
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare hyperopia and astigmatism (obsolete MONDO:0020209)","secondary_identifiers":["Orphanet:98621"],"termid":"MONDO:0020209","xrefs":{"Monarch":{"xref_id":"0020209"}}}


id: PBO:0117145
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TNRC18 antisense RNA 1","termid":"PBO:0117145"}


id: GO:0001941
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process which results in the assembly, arrangement of constituent parts, or disassembly of a postsynaptic membrane, the specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft).","definition_xrefs":["GOC:pr","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane organization","termid":"GO:0061024"},{"relation_name":"part_of","term_name":"postsynapse organization","termid":"GO:0099173"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0008150","GO:0061024"],"is_obsolete":false,"name":"postsynaptic membrane organization","synonyms":[{"name":"post-synaptic membrane organization","type":"exact"},{"name":"postsynaptic membrane organisation","type":"exact"}],"termid":"GO:0001941"}


id: MONDO:0019776
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Juberg-Marsidi syndrome is an X-linked mental retardation (XLMR) syndrome belonging to the group of conditions characterized by the association of intellectual deficit with hypotonic facies (Mental retardation, X-linked-hypotonic facies).","definition_xrefs":["Orphanet:93972"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"intellectual disability","termid":"MONDO:0001071"}],"gene_count":0,"genotype_count":0,"name":"obsolete Juberg-Marsidi syndrome (obsolete MONDO:0019776)","secondary_identifiers":["SCTID:721875000"],"synonyms":[{"name":"juberg Marsidi syndrome","type":"exact"}],"termid":"MONDO:0019776","xrefs":{"Monarch":{"xref_id":"0019776"}}}


id: MONDO:0017288
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete DICER1 syndrome (obsolete MONDO:0017288)","secondary_identifiers":["EFO:0009068"],"termid":"MONDO:0017288","xrefs":{"Monarch":{"xref_id":"0017288"}}}


id: PBO:0030601
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_isoleucine_import","termid":"PBO:0030601"}


id: PBO:0042071
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCDC140 long non-coding RNA","termid":"PBO:0042071"}


id: GO:0085011
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. An interaction with the host organism mediated by a substance secreted by the symbiont organism by a Sec complex. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete interaction with host via protein secreted by Sec complex (obsolete GO:0085011)","synonyms":[{"name":"interaction with host via protein secreted by Sec secretion system","type":"exact"}],"termid":"GO:0085011"}


id: PBO:0057545
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 661","termid":"PBO:0057545"}


id: PBO:0056835
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MGAT3 antisense RNA 1","termid":"PBO:0056835"}


id: PR:G2TRP3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ymr31 gene.","definition_xrefs":["UniProtKB:G2TRP3","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"37S ribosomal protein YMR-31, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC21B10.14","synonyms":[{"name":"Spom972h-ymr31","type":"exact"}],"termid":"PR:G2TRP3"}


id: MONDO:0005864
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant neoplasm affecting the skeletal or smooth muscles. Malignant neoplasms arising from the skeletal muscles are called rhabdomyosarcomas. Malignant neoplasms arising from the smooth muscles are called leiomyosarcomas.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"musculoskeletal system cancer","termid":"MONDO:0000637"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"muscle cancer","secondary_identifiers":["ICD9:171.9","MEDGEN:151927","ICDO:8895/3","DOID:4045","UMLS:C0684743","EFO:0007384","SCTID:363495004","NCIT:C4883"],"synonyms":[{"name":"cancer of muscle structure","type":"exact"},{"name":"malignant muscle neoplasm","type":"exact"},{"name":"malignant muscle structure neoplasm","type":"exact"},{"name":"malignant muscle tumor","type":"exact"},{"name":"malignant muscle tumour","type":"exact"},{"name":"malignant neoplasm of muscle","type":"exact"},{"name":"malignant neoplasm of muscle structure","type":"exact"},{"name":"malignant neoplasm of the muscle","type":"exact"},{"name":"malignant tumor of muscle","type":"exact"},{"name":"malignant tumor of the muscle","type":"exact"},{"name":"malignant tumour of muscle","type":"exact"},{"name":"malignant tumour of the muscle","type":"exact"},{"name":"muscle structure cancer","type":"exact"},{"name":"myosarcoma","type":"exact"}],"termid":"MONDO:0005864","xrefs":{"Monarch":{"xref_id":"0005864"}}}


id: MOD:01204
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Artifact -","definition_xrefs":["PubMed:9004526","Unimod:526"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-methionine residue","termid":"MOD:00913"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prompt loss of methanethiol from oxidixed methionine","synonyms":[{"name":"Dethiomethyl","type":"related"},{"name":"Prompt loss of side chain from oxidised Met","type":"related"}],"termid":"MOD:01204"}


id: GO:1990548
data:
  {"annotated_genes":["SJAG_03503"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[107931],"is_not":false,"summary":null,"term":"GO:1990548"}]},"cv_name":"biological_process","definition":"The process in which FAD is transported across a mitochondrial membrane, into or out of the mitochondrion.","definition_xrefs":["PMID:14555654"],"direct_ancestors":[{"relation_name":"is_a","term_name":"FAD transmembrane transport","termid":"GO:0035350"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03503":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0055085","GO:0051179"],"is_obsolete":false,"name":"mitochondrial FAD transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1990548","terms_by_termid":{"GO:1990548":null}}


id: GO:0048364
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the root over time, from its formation to the mature structure. The root is the water- and mineral-absorbing part of a plant which is usually underground, does not bear leaves, tends to grow downwards and is typically derived from the radicle of the embryo.","definition_xrefs":["GOC:jid","PO:0009005"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plant organ development","termid":"GO:0099402"},{"relation_name":"part_of","term_name":"root system development","termid":"GO:0022622"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"root development","termid":"GO:0048364"}


