# terms

id: PBO:0051625
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inflammation and lipid regulator with UBA-like and NBR1-like domains","termid":"PBO:0051625"}


id: PBO:0051527
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 1 receptor antagonist","termid":"PBO:0051527"}


id: PBO:0091695
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Latrunculin Sensitive Knockout","termid":"PBO:0091695"}


id: PBO:0036393
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial intermembrane space protein; involved in phospholipid metabolism Ups2 (predicted)","termid":"PBO:0036393"}


id: PBO:0000525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"THO complex subunit Tho2 (predicted)","termid":"PBO:0000525"}


id: GO:0046463
data:
  {"annotated_genes":["SJAG_03162","SJAG_04041","SJAG_02763","SJAG_03609"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90390,71670,74926,77340],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019432"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of acylglycerol, any mono-, di- or triester of glycerol with (one or more) fatty acids.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acylglycerol metabolic process","termid":"GO:0006639"},{"relation_name":"is_a","term_name":"glycerolipid biosynthetic process","termid":"GO:0045017"},{"relation_name":"is_a","term_name":"neutral lipid biosynthetic process","termid":"GO:0046460"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02763":null,"SJAG_03162":null,"SJAG_03609":null,"SJAG_04041":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"acylglycerol biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"acylglycerol anabolism","type":"exact"},{"name":"acylglycerol biosynthesis","type":"exact"},{"name":"acylglycerol formation","type":"exact"},{"name":"acylglycerol synthesis","type":"exact"}],"termid":"GO:0046463","terms_by_termid":{"GO:0019432":null}}


id: MONDO:0024313
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An infection caused by Staphylococcus.","definition_xrefs":["NCIT:C35038"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bacterial infectious disease","termid":"MONDO:0005113"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"staphylococcal infection","secondary_identifiers":["MESH:D013203","SCTID:56038003","UMLS:C0038160","EFO:1001849","MEDGEN:52483"],"synonyms":[{"name":"staphylococcal infection","type":"exact"}],"termid":"MONDO:0024313","xrefs":{"Monarch":{"xref_id":"0024313"}}}


id: PBO:NCBI Taxonomy id
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase organism property types","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"taxon_id","termid":"PBO:NCBI Taxonomy id"}


id: PBO:0116200
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein Methyl Esterase","termid":"PBO:0116200"}


id: PBO:0057947
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3670-3","termid":"PBO:0057947"}


id: GO:0097243
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a flavonoid, a compound containing two or more aromatic rings, each bearing at least one aromatic hydroxyl and connected with a carbon bridge.","definition_xrefs":["GOC:sl","PMID:20599706"],"direct_ancestors":[{"relation_name":"is_a","term_name":"binding","termid":"GO:0005488"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"flavonoid binding","termid":"GO:0097243"}


id: GO:0008068
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transmembrane transfer of a chloride ion by a channel that opens when glutamate is bound by the channel complex or one of its constituent parts on the extracellular side of the plasma membrane.","definition_xrefs":["ISBN:0815340729","GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellularly glutamate-gated ion channel activity","termid":"GO:0005234"},{"relation_name":"is_a","term_name":"chloride channel activity","termid":"GO:0005254"},{"relation_name":"is_a","term_name":"ligand-gated monoatomic anion channel activity","termid":"GO:0099095"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"extracellularly glutamate-gated chloride channel activity","synonyms":[{"name":"extracellular-glutamate-gated chloride channel activity","type":"exact"}],"termid":"GO:0008068"}


id: _global:results_in_maturation_of
data:
  {"annotation_feature_type":"gene","cv_name":"go/extensions/gorel","definition":"The relationship that links an entity with a process that results in the progression of the entity over time that is independent of changes in it's shape and results in an end point state of that entity.","direct_ancestors":[{"relation_name":"is_a","term_name":"has_participant","termid":"RO:0000057"},{"relation_name":"is_a","term_name":"go_annotation_extension_relation","termid":"_global:go_annotation_extension_relation"},{"relation_name":"is_a","term_name":"results_in_changes_to_anatomical_or_cellular_structure","termid":"_global:results_in_changes_to_anatomical_or_cellular_structure"},{"relation_name":"is_a","term_name":"results_in_developmental_progression_of","termid":"_global:results_in_developmental_progression_of"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"results_in_maturation_of","secondary_identifiers":["GOREL:0001013","RO:0002299"],"termid":"_global:results_in_maturation_of"}


id: PBO:0050071
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HM13 intronic transcript 1","termid":"PBO:0050071"}


id: PBO:0031313
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_septation","termid":"PBO:0031313"}


id: SO:0001571
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant whereby a new splice site is created due to the activation of a new donor.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cryptic_splice_site_variant","termid":"SO:0001569"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cryptic_splice_donor","synonyms":[{"name":"cryptic splice donor","type":"exact"}],"termid":"SO:0001571"}


id: MOD:00577
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Other","definition_xrefs":["Unimod:254","PubMed:7744761"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Unimod","termid":"MOD:00003"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acetaldehyde +26","synonyms":[{"name":"Acetaldehyde +26","type":"related"},{"name":"Delta:H(2)C(2)","type":"related"}],"termid":"MOD:00577"}


id: PBO:0041604
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CA15 pseudogene 1","termid":"PBO:0041604"}


id: FYPO:0000343
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which the concentration of hydrogen sulfide released into the growth medium by cells is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased concentration of substance in growth medium","termid":"FYPO:0000800"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001155"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001155"],"is_obsolete":false,"name":"increased concentration of hydrogen sulfide in growth medium","synonyms":[{"name":"increased concentration of H2S in growth medium","type":"exact"},{"name":"increased hydrogen sulfide biosynthesis","type":"related"}],"termid":"FYPO:0000343"}


id: GO:0030589
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Formation of furrows in the cytoplasm between nuclei during cell cycles in embryos that contribute to the formation of the syncytial blastoderm. An example of this process is found in Drosophila melanogaster.","definition_xrefs":["GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pseudocleavage","termid":"GO:0030588"},{"relation_name":"part_of","term_name":"embryonic development via the syncytial blastoderm","termid":"GO:0001700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pseudocleavage involved in syncytial blastoderm formation","synonyms":[{"name":"pseudocleavage during syncytial blastoderm formation","type":"related"}],"termid":"GO:0030589"}


id: GO:1904708
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of granulosa cell apoptotic process.","definition_xrefs":["PMID:19208546","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of epithelial cell apoptotic process","termid":"GO:1904035"},{"relation_name":"regulates","term_name":"granulosa cell apoptotic process","termid":"GO:1904700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of granulosa cell apoptotic process","synonyms":[{"name":"regulation of granulosa cell apoptosis","type":"narrow"},{"name":"regulation of granulosa cell of ovary apoptosis","type":"narrow"},{"name":"regulation of granulosa cell of ovary apoptotic process","type":"exact"}],"termid":"GO:1904708"}


id: FYPO:0001096
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of RNA measured in a cell that is subject to nitrogen starvation is normal (i.e. indistinguishable from wild type). Total RNA or a specific RNA, such as the mRNA transcribed from a gene of interest, may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal RNA level","termid":"FYPO:0000840"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal RNA level during nitrogen starvation","synonyms":[{"name":"normal RNA accumulation during nitrogen starvation","type":"related"},{"name":"normal RNA level during nitrogen depletion","type":"exact"},{"name":"normal RNA level during nitrogen deprivation","type":"exact"},{"name":"normal cellular RNA level during nitrogen starvation","type":"exact"},{"name":"normal mRNA level during nitrogen starvation","type":"narrow"},{"name":"normal transcript level during nitrogen starvation","type":"exact"}],"termid":"FYPO:0001096"}


id: PBO:0082635
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of eisosome required for proper eisosome assembly; precedes Pil1p/Lsp1p during eisosome formation, controls eisosome length and shape; diffusely distributed, forms heterogeneous patches at plasma membrane in small buds, also found in medium and large buds; expression repressed by cAMP; similar to A. gossypii SEG gene and to S. pombe Sle1p, important for generating eisosomes; SEG1 has a paralog, SEG2, that arose from the whole genome duplication","termid":"PBO:0082635"}


id: PR:O60087
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- meu17 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O60087"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucoamylase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC14C8.05c","synonyms":[{"name":"1,4-alpha-D-glucan glucohydrolase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-meu17","type":"exact"},{"name":"glucan 1,4-alpha-glucosidase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"meiotic expression up-regulated protein 17 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O60087"}


id: MONDO:0027677
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"poisoning","termid":"MONDO:0029000"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"isoniazid toxicity","secondary_identifiers":["Orphanet:240887"],"termid":"MONDO:0027677","xrefs":{"Monarch":{"xref_id":"0027677"}}}


id: GO:0051001
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops or reduces the activity of the enzyme nitric-oxide synthase.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of nitric-oxide synthase activity","termid":"GO:0050999"},{"relation_name":"is_a","term_name":"negative regulation of oxidoreductase activity","termid":"GO:0051354"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of nitric-oxide synthase activity","synonyms":[{"name":"NOS inhibitor","type":"narrow"},{"name":"down regulation of nitric-oxide synthase activity","type":"exact"},{"name":"down-regulation of nitric-oxide synthase activity","type":"exact"},{"name":"downregulation of nitric-oxide synthase activity","type":"exact"},{"name":"inhibition of nitric-oxide synthase activity","type":"narrow"},{"name":"negative regulation of NOS activity","type":"exact"},{"name":"nitric-oxide synthase inhibitor","type":"narrow"}],"termid":"GO:0051001"}


id: MONDO:0010351
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Fanconi anemia caused by mutations of the FANCB gene. This gene encodes the protein for complementation group B.","definition_xrefs":["NCIT:C125703"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Fanconi anemia","termid":"MONDO:0019391"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0021190"},{"rel_name":"is_a","termid":"MONDO:0002280"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0005046","MONDO:0021190","MONDO:0005570","MONDO:0002280"],"is_obsolete":false,"name":"Fanconi anemia complementation group B","secondary_identifiers":["GARD:15257","UMLS:C1845292","OMIM:300514","MESH:C564497","DOID:0111098","MEDGEN:336901"],"synonyms":[{"name":"FA2","type":"exact"},{"name":"FACB","type":"exact"},{"name":"FANCB","type":"exact"},{"name":"Fanconi Anemia, complementation group type B","type":"exact"},{"name":"Fanconi anaemia complementation group type B","type":"exact"},{"name":"Fanconi anemia complementation group B","type":"exact"},{"name":"Fanconi anemia complementation group type B","type":"exact"},{"name":"Fanconi anemia, complementation group B","type":"related"},{"name":"Fanconi anemia, complementation group B, X-linked recessive","type":"exact"},{"name":"Fanconi pancytopenia type 2","type":"exact"},{"name":"Fanconi pancytopenia, type 2","type":"related"}],"termid":"MONDO:0010351","xrefs":{"Monarch":{"xref_id":"0010351"}}}


id: PBO:0052521
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kelch like family member 34","termid":"PBO:0052521"}


id: MOD:00398
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom with a carbamoyl (carboxamido) group. Replacement of an amino hydrogen produces a ureido group.","definition_xrefs":["Unimod:5","DeltaMass:56","PubMed:10978403","PubMed:12203680"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification categorized by chemical process","termid":"MOD:01156"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carbamoylated residue","synonyms":[{"name":"Carbamyl","type":"related"},{"name":"Carbamylation","type":"exact"}],"termid":"MOD:00398"}


id: GO:1900878
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving (Z)-nonadeca-1,14-diene.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"olefin metabolic process","termid":"GO:1900673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"(Z)-nonadeca-1,14-diene metabolic process","synonyms":[{"name":"(Z)-nonadeca-1,14-diene metabolism","type":"exact"}],"termid":"GO:1900878"}


id: MONDO:0025701
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"leukodystrophy","termid":"MONDO:0019046"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"leukodystrophy, hypomyelinating, 22","secondary_identifiers":["MEDGEN:1787833","DOID:0070402","OMIM:619328","UMLS:C5543406"],"synonyms":[{"name":"HLD22","type":"exact"}],"termid":"MONDO:0025701","xrefs":{"Monarch":{"xref_id":"0025701"}}}


id: PR:Q10422
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC25G10.01 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10422"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized RNA-binding protein C25G10.01 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC25G10.01","synonyms":[{"name":"Spom972h-SPAC25G10.01","type":"exact"}],"termid":"PR:Q10422"}


id: GO:0036375
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An apical protein complex that contains the proteins Kibra, Expanded and Merlin (Mer), or orthologs thereof. In humans, the complex contains KIBRA, FDM6 and NF2.","definition_xrefs":["PMID:20159598"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"apical part of cell","termid":"GO:0045177"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"Kibra-Ex-Mer complex","synonyms":[{"name":"KEM complex","type":"exact"},{"name":"Kbr, Ex and Mer complex","type":"exact"}],"termid":"GO:0036375"}


id: SO:0001989
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A 5' UTR variant where a premature start codon is lost.","definition_xrefs":["SANGER:am"],"direct_ancestors":[{"relation_name":"is_a","term_name":"5_prime_UTR_premature_start_codon_variant","termid":"SO:0001983"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5_prime_UTR_premature_start_codon_loss_variant","termid":"SO:0001989"}


id: GO:0019876
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of nylon, a polymer where the main polymer chain comprises recurring amide groups; these compounds are generally formed from combinations of diamines, diacids and amino acids.","definition_xrefs":["UniProtKB-KW:KW-0549"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xenobiotic catabolic process","termid":"GO:0042178"},{"relation_name":"is_a","term_name":"nylon metabolic process","termid":"GO:0042198"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"nylon catabolic process","synonyms":[{"name":"nylon breakdown","type":"exact"},{"name":"nylon catabolism","type":"exact"},{"name":"nylon degradation","type":"exact"}],"termid":"GO:0019876"}


id: PR:Q9UTJ3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- meu1-1 gene.","definition_xrefs":["UniProtKB:Q9UTJ3","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic expression up-regulated protein 1/2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1556.06","synonyms":[{"name":"Spom972h-meu1-1","type":"exact"}],"termid":"PR:Q9UTJ3"}


id: PBO:0017594
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial translation protein Mtf2 (predicted)","termid":"PBO:0017594"}


id: MONDO:0017940
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autosomal dominant Charcot-Marie-Tooth disease type 2 due to KIF5A mutation is a rare form of axonal peripheral sensorimotor neuropathy characterized by classical CMT2 signs and symptoms (progressive weakness and atrophy of distal limb muscles, mild sensory deficits of position, vibration and pain/temperature, pes cavus, and symmetrically absent or reduced muscle and sensory action potentials with relatively preserved nerve conduction velocities in neurophysiological studies) as well as pyramidal tract involvement (spasticity, hyperreflexia). Spasticity and pain may be the presenting symptoms.","definition_xrefs":["Orphanet:324611"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Charcot-Marie-Tooth disease type 2","termid":"MONDO:0018993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244"],"is_obsolete":false,"name":"autosomal dominant Charcot-Marie-Tooth disease type 2 due to KIF5A mutation","secondary_identifiers":["SCTID:764730007","GARD:21447","MEDGEN:1633598","UMLS:C4707173"],"synonyms":[{"name":"CMT2 due to KIF5A mutation","type":"exact"}],"termid":"MONDO:0017940","xrefs":{"Monarch":{"xref_id":"0017940"}}}


id: PR:O74471
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cox13 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74471"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 6A, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1739.09c","synonyms":[{"name":"Spom972h-cox13","type":"exact"},{"name":"cytochrome c oxidase polypeptide VIa (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74471"}


id: PR:O14077
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An insulin-degrading enzyme that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01213","PANTHER:PTHR11851:SF64"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc protease mug138 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPACUNK4.12c","secondary_identifiers":["UniProtKB:O14077"],"synonyms":[{"name":"Spom972h-IDE","type":"exact"},{"name":"meiotically up-regulated gene 138 protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14077"}


id: PBO:0079187
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis specific protein Y-linked 16, pseudogene","termid":"PBO:0079187"}


id: GO:0006015
data:
  {"annotated_genes":["SJAG_04882","SJAG_04970","SJAG_03811"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[63664,72795,74243],"is_not":false,"summary":null,"term":"GO:0006015"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of 5-phosphoribose 1-diphosphate, also known as 5-phosphoribosyl-1-pyrophosphate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribose phosphate biosynthetic process","termid":"GO:0046390"},{"relation_name":"is_a","term_name":"5-phosphoribose 1-diphosphate metabolic process","termid":"GO:0046391"}],"gene_count":3,"genes_by_uniquename":{"SJAG_03811":null,"SJAG_04882":null,"SJAG_04970":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"5-phosphoribose 1-diphosphate biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000117":null},"secondary_identifiers":["Reactome:R-HSA-73843"],"synonyms":[{"name":"5-phosphoribose 1-diphosphate anabolism","type":"exact"},{"name":"5-phosphoribose 1-diphosphate biosynthesis","type":"exact"},{"name":"5-phosphoribose 1-diphosphate formation","type":"exact"},{"name":"5-phosphoribose 1-diphosphate synthesis","type":"exact"},{"name":"5-phosphoribosyl-1-pyrophosphate biosynthesis","type":"exact"},{"name":"5-phosphoribosyl-1-pyrophosphate biosynthetic process","type":"exact"},{"name":"PRPP biosynthetic process","type":"exact"}],"termid":"GO:0006015","terms_by_termid":{"GO:0006015":null}}


id: MONDO:0009113
data:
  {"annotated_genes":["SJAG_02009"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87429],"is_not":false,"summary":null,"term":"MONDO:0009113"}]},"cv_name":"mondo","definition":"A rare, autosomal recessive, inherited disorder caused by mutation of the BPGM gene. It is characterized by hemolytic anemia and splenomegaly.","definition_xrefs":["NCIT:C131638"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial hemolytic anemia","termid":"MONDO:0003689"},{"relation_name":"is_a","term_name":"inborn errors of metabolism","termid":"MONDO:0019052"},{"relation_name":"is_a","term_name":"anemia due to erythrocyte enzyme disorder","termid":"MONDO:0020585"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02009":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002280"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0005570","MONDO:0002280"],"is_obsolete":false,"name":"hemolytic anemia due to diphosphoglycerate mutase deficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0111630","Orphanet:714","GARD:1874","MEDGEN:489898","UMLS:C1291620","OMIM:222800"],"synonyms":[{"name":"BPGM deficiency","type":"related"},{"name":"DPGM deficiency","type":"related"},{"name":"bisphosphoglycerate mutase deficiency","type":"related"},{"name":"bisphosphoglyceromutase deficiency","type":"related"},{"name":"diphosphoglycerate mutase deficiency of erythrocyte","type":"related"},{"name":"diphosphoglycerate phosphatase deficiency","type":"exact"},{"name":"erythrocytosis, familial, 8","type":"exact"}],"termid":"MONDO:0009113","terms_by_termid":{"MONDO:0009113":null},"xrefs":{"Monarch":{"xref_id":"0009113"}}}


id: GO:0015700
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of arsenite into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transport","termid":"GO:0006810"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"arsenite transport","termid":"GO:0015700"}


id: GO:0150037
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of calcium-dependent activation of synaptic vesicle fusion.","definition_xrefs":["GOC:bc","GOC:aruk","PMID:27052163"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of synaptic vesicle fusion to presynaptic active zone membrane","termid":"GO:0031630"},{"relation_name":"regulates","term_name":"calcium-dependent activation of synaptic vesicle fusion","termid":"GO:0099502"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0016192","GO:0006810","GO:0061024","GO:0008150"],"is_obsolete":false,"name":"regulation of calcium-dependent activation of synaptic vesicle fusion","termid":"GO:0150037"}


id: GO:0005121
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a Toll protein, a transmembrane receptor.","definition_xrefs":["GOC:ceb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor binding","termid":"GO:0005102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"Toll binding","synonyms":[{"name":"Tl binding","type":"exact"},{"name":"Toll ligand","type":"narrow"},{"name":"Toll receptor binding","type":"exact"}],"termid":"GO:0005121"}


id: PBO:0114498
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in DNA double-strand break repair; synergistic defect in DSB repair via single-strand annealing with the RAD52 null mutant; possible role in the end resection process; non-essential gene; null mutant has a sporulation defect, displays increased levels of spontaneous Rad52p foci and has a respiratory growth defect","termid":"PBO:0114498"}


id: GO:0004309
data:
  {"annotated_genes":["SJAG_01154","SJAG_00570","SJAG_03964"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[70898,72371,105569],"is_not":false,"summary":null,"term":"GO:0004309"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: polyphosphate(n) + H2O = polyphosphate(n-1) + phosphate.","definition_xrefs":["EC:3.6.1.11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrophosphatase activity","termid":"GO:0016462"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00570":null,"SJAG_01154":null,"SJAG_03964":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"exopolyphosphatase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["RHEA:21528","MetaCyc:EXOPOLYPHOSPHATASE-RXN"],"synonyms":[{"name":"Gra-Pase activity","type":"related"},{"name":"acid phosphoanhydride phosphohydrolase activity","type":"related"},{"name":"exopolypase activity","type":"related"},{"name":"metaphosphatase activity","type":"broad"},{"name":"polyphosphate phosphohydrolase activity","type":"related"}],"termid":"GO:0004309","terms_by_termid":{"GO:0004309":null}}


id: PBO:0035911
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_ubiquitination_during_vegetative_growth","termid":"PBO:0035911"}


id: MOD:00857
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-alaninium (protonated L-alanine) residue to an N,N,N-trimethyl-L-alanine.","definition_xrefs":["PubMed:332162","PubMed:7715456","PubMed:3979397","PubMed:12590383","PubMed:6778808","Unimod:37#A"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"protonated L-alanine (L-alaninium) residue","termid":"MOD:00856"},{"relation_name":"is_a","term_name":"alpha-amino trimethylated residue","termid":"MOD:01687"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"N,N,N-trimethyl-L-alanine (from L-alaninium)","synonyms":[{"name":"N2Me3Ala","type":"exact"}],"termid":"MOD:00857"}


id: MONDO:0004709
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplasm involving a occipital lobe.","definition_xrefs":["MONDO:patterns/neoplasm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neoplasm of cerebral hemisphere","termid":"MONDO:0021374"},{"relation_name":"is_a","term_name":"cerebral cortex disorder","termid":"MONDO:0044996"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"occipital lobe neoplasm","secondary_identifiers":["ICD10CM:C71.4","ICD9:191.4","MEDGEN:220389","SCTID:126957005","UMLS:C1263889","NCIT:C5574","DOID:910"],"synonyms":[{"name":"malignant neoplasm of occipital lobe","type":"exact"},{"name":"neoplasm of occipital lobe","type":"exact"},{"name":"neoplasm of the occipital lobe","type":"exact"},{"name":"occipital lobe neoplasm","type":"exact"},{"name":"occipital lobe neoplasm (disease)","type":"exact"},{"name":"occipital lobe tumor","type":"exact"},{"name":"occipital lobe tumour","type":"exact"},{"name":"tumor of occipital lobe","type":"exact"},{"name":"tumor of the occipital lobe","type":"exact"},{"name":"tumour of occipital lobe","type":"exact"},{"name":"tumour of the occipital lobe","type":"exact"}],"termid":"MONDO:0004709","xrefs":{"Monarch":{"xref_id":"0004709"}}}


id: PBO:0048313
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyceraldehyde 3 phosphate dehydrogenase pseudogene 24","termid":"PBO:0048313"}


id: GO:0099032
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the postsynaptic early endosome membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.","definition_xrefs":["GOC:dos"],"gene_count":0,"genotype_count":0,"name":"obsolete anchored component of postsynaptic early endosome membrane (obsolete GO:0099032)","termid":"GO:0099032"}


id: MOD:01245
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-aspartic acid residue to the potassium aspartate salt.","definition_xrefs":["Unimod:530#D"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-aspartic acid residue","termid":"MOD:00904"},{"relation_name":"is_a","term_name":"monopotassium salt","termid":"MOD:01072"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium L-aspartate","synonyms":[{"name":"Cation:K","type":"related"},{"name":"Replacement of proton by potassium","type":"related"}],"termid":"MOD:01245"}


id: FYPO:0004457
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the nucleus is decreased when the cell is subject to nitrogen starvation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to nucleus","termid":"FYPO:0004455"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"decreased protein localization to nucleus during nitrogen starvation","synonyms":[{"name":"decreased protein localisation to nucleus during nitrogen starvation","type":"exact"},{"name":"decreased protein localization to nucleus during nitrogen depletion","type":"exact"},{"name":"decreased protein localization to nucleus during nitrogen deprivation","type":"exact"},{"name":"reduced protein localization to nucleus during nitrogen starvation","type":"exact"}],"termid":"FYPO:0004457"}


id: MONDO:1012461
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hemangiosarcoma, non-human animal","termid":"MONDO:1011823"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hemangiosarcoma, horse","secondary_identifiers":["OMIA:001813-9796"],"termid":"MONDO:1012461","xrefs":{"Monarch":{"xref_id":"1012461"}}}


id: GO:0006540
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of succinate from glutamate. Also known as GABA (gamma-aminobutyrate) shunt since it channels glutamate into the TCA cycle bypassing two steps of that cycle. There are three enzymes involved in the GABA shunt: glutamate decarboxylase (GAD), GABA aminotransferase (GABA-TA), and succinate semialdehyde dehydrogenase (SSADH). These three enzymes acting in concert to convert glutamate into succinate. The GABA shunt is predominantly associated with neurotransmission in the mammalian brain. It is also present in nonneuronal cells, in plants, in unicellular eukaryotes, and in prokaryotes.","definition_xrefs":["PMID:12740438"],"direct_ancestors":[{"relation_name":"is_a","term_name":"succinate metabolic process","termid":"GO:0006105"},{"relation_name":"is_a","term_name":"glutamate catabolic process","termid":"GO:0006538"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0006520","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"gamma-aminobutyrate shunt","secondary_identifiers":["MetaCyc:GLUDEG-I-PWY"],"synonyms":[{"name":"4-aminobutyrate shunt","type":"exact"},{"name":"GABA shunt","type":"exact"},{"name":"degradation of glutamate to succinate through GABA","type":"exact"},{"name":"gamma aminobutyrate shunt","type":"exact"},{"name":"glutamate decarboxylation to succinate","type":"exact"},{"name":"glutamate degradation via 4-aminobutyrate","type":"exact"},{"name":"glutamate degradation via GABA","type":"exact"}],"termid":"GO:0006540"}


id: PR:000044798
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A cell division control protein 42 that is encoded in the genome of Schizosaccharomyces pombe.","definition_xrefs":["PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell division control protein 42 (Schizosaccharomyces pombe)","pombase_gene_id":"SPAC110.03","synonyms":[{"name":"SPAC110.03","type":"related"},{"name":"Spom-cdc2","type":"exact"}],"termid":"PR:000044798"}


id: PBO:0039867
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARHGAP27P1-BPTFP1-KPNA2P3 readthrough, transcribed pseudogene","termid":"PBO:0039867"}


id: GO:0044647
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An occluding cell-cell junction formed between the membranes of the apical end of an invading cell (e.g. a merozoite in Plasmodium) and a host target cell (e.g. erythrocyte for Plasmodium infection). The junction is a stable yet dynamic structure that moves around the symbiont cell during invasion, enclosing it in a vacuole surrounded by a membrane.","definition_xrefs":["PMID:21803641","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bicellular tight junction","termid":"GO:0005923"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host-symbiont bicellular tight junction","synonyms":[{"name":"host-parasite tight junction","type":"exact"},{"name":"host-pathogen tight junction","type":"exact"}],"termid":"GO:0044647"}


id: PBO:0029724
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_number_of_cells_with_1C_DNA_content","termid":"PBO:0029724"}


id: GO:1903325
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of snoRNA metabolic process.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of RNA metabolic process","termid":"GO:0051254"},{"relation_name":"is_a","term_name":"regulation of snoRNA metabolic process","termid":"GO:1903323"},{"relation_name":"positively_regulates","term_name":"sno(s)RNA metabolic process","termid":"GO:0016074"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016074"},{"rel_name":"positively_regulates","termid":"GO:0016074"}],"interesting_parent_ids":["GO:0008150","GO:0016074"],"is_obsolete":false,"name":"positive regulation of snoRNA metabolic process","synonyms":[{"name":"activation of snoRNA metabolic process","type":"narrow"},{"name":"activation of snoRNA metabolism","type":"narrow"},{"name":"positive regulation of snoRNA metabolism","type":"exact"},{"name":"up regulation of snoRNA metabolic process","type":"exact"},{"name":"up regulation of snoRNA metabolism","type":"exact"},{"name":"up-regulation of snoRNA metabolic process","type":"exact"},{"name":"up-regulation of snoRNA metabolism","type":"exact"},{"name":"upregulation of snoRNA metabolic process","type":"exact"},{"name":"upregulation of snoRNA metabolism","type":"exact"}],"termid":"GO:1903325"}


id: PBO:0003691
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclophilin family peptidyl-prolyl cis-trans isomerase Cyp2","termid":"PBO:0003691"}


id: GO:0001305
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process that results in changes in chromatin structure contributing to chronological cell aging, occurring in non-dividing cells.","definition_xrefs":["GOC:dph","GOC:tb","GOC:jh"],"gene_count":0,"genotype_count":0,"name":"obsolete progressive alteration of chromatin involved in chronological cell aging (obsolete GO:0001305)","synonyms":[{"name":"progressive alteration of chromatin during chronological cell ageing","type":"related"},{"name":"progressive alteration of chromatin during chronological cell aging","type":"related"}],"termid":"GO:0001305"}


id: PBO:0078010
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TRAF interacting protein","termid":"PBO:0078010"}


id: PBO:0042906
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cofilin 1 pseudogene 3","termid":"PBO:0042906"}


id: PBO:0053309
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lin-37 DREAM MuvB core complex component","termid":"PBO:0053309"}


id: GO:0097687
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A horn-shaped dinoflagellate antapex found in thecate species.","definition_xrefs":["PMID:7002229","GOC:at"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dinoflagellate antapex","termid":"GO:0097684"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"dinoflagellate antapical horn","termid":"GO:0097687"}


id: PBO:0078291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Cys (GCA) 24-1","termid":"PBO:0078291"}


id: PR:O74499
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A U6 snRNA-associated Sm-like protein LSm7 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR10553:SF1","OMA:SCHPO04840"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U6 snRNA-associated Sm-like protein LSm7 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC285.12","secondary_identifiers":["UniProtKB:O74499"],"synonyms":[{"name":"Spom972h-LSM7","type":"exact"}],"termid":"PR:O74499"}


id: FYPO:0003700
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of snoRNA primary transcripts measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased RNA level during vegetative growth","termid":"FYPO:0000825"},{"relation_name":"is_a","term_name":"altered snoRNA or precursor level","termid":"FYPO:0005998"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0006551"],"is_obsolete":false,"name":"increased snoRNA primary transcript level","synonyms":[{"name":"increased small nucleolar RNA primary transcript level","type":"exact"},{"name":"increased snoRNA primary transcript accumulation","type":"related"},{"name":"increased snoRNA primary transcript level during mitotic cell cycle","type":"related"},{"name":"increased snoRNA primary transcript level during vegetative growth","type":"exact"},{"name":"increased snoRNA transcript level","type":"broad"}],"termid":"FYPO:0003700"}


id: PBO:0043077
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cholinergic receptor nicotinic alpha 6 subunit","termid":"PBO:0043077"}


id: MONDO:0021404
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A polyp that involves the sphenoidal sinus.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"paranasal sinus disorder","termid":"MONDO:0001735"},{"relation_name":"is_a","term_name":"polyp","termid":"MONDO:0005079"},{"relation_name":"is_a","term_name":"disorder of facial skeleton","termid":"MONDO:0023369"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polyp of sphenoidal sinus","secondary_identifiers":["UMLS:C0264255","NCIT:C3933","SCTID:90685008","MEDGEN:75538","ICD9:471.8"],"synonyms":[{"name":"polyp of sphenoid sinus","type":"exact"},{"name":"polyp of the sphenoid sinus","type":"exact"},{"name":"polyp of the sphenoidal sinus","type":"exact"},{"name":"sphenoid sinus polyp","type":"exact"},{"name":"sphenoidal sinus polyp","type":"exact"}],"termid":"MONDO:0021404","xrefs":{"Monarch":{"xref_id":"0021404"}}}


id: GO:0097262
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: eoxin C4 = eoxin D4 + 5-L-glutamyl amino acid.","definition_xrefs":["PMID:18647347","GOC:mw","PMID:18184802"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoacyltransferase activity","termid":"GO:0016755"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0016746","GO:0003674"],"is_obsolete":false,"name":"eoxin D4 synthase activity","secondary_identifiers":["Reactome:R-HSA-2161945"],"termid":"GO:0097262"}


id: GO:0000747
data:
  {"annotated_genes":["SJAG_04887","SJAG_02472","SJAG_03486","SJAG_00975","SJAG_02923","SJAG_02723","SJAG_02864","SJAG_04723","SJAG_01254","SJAG_03623","SJAG_03453","SJAG_02700","SJAG_02730","SJAG_02379","SJAG_00990","SJAG_04206","SJAG_01017","SJAG_01888","SJAG_02066","SJAG_04982","SJAG_04394","SJAG_01978","SJAG_02924","SJAG_03340","SJAG_01699","SJAG_03309","SJAG_02651","SJAG_04155","SJAG_00113","SJAG_00256","SJAG_05000","SJAG_03048","SJAG_02351","SJAG_02718","SJAG_01894","SJAG_03346","SJAG_02266","SJAG_00993","SJAG_03444","SJAG_00667","SJAG_05016","SJAG_05153","SJAG_05001","SJAG_04813","SJAG_02286","SJAG_03501","SJAG_02380","SJAG_03802","SJAG_00810","SJAG_01311","SJAG_03067","SJAG_02426","SJAG_02602","SJAG_04682","SJAG_06638","SJAG_02444","SJAG_01613","SJAG_03735","SJAG_02233","SJAG_01171","SJAG_04936","SJAG_03209","SJAG_02989","SJAG_02785","SJAG_00140","SJAG_01345","SJAG_00117","SJAG_02737","SJAG_01113","SJAG_03974","SJAG_02222","SJAG_02486","SJAG_02432","SJAG_01718","SJAG_00600","SJAG_02773","SJAG_04398","SJAG_00664","SJAG_01084","SJAG_04009","SJAG_01919","SJAG_00526","SJAG_01943","SJAG_01401","SJAG_02878","SJAG_01993","SJAG_00145","SJAG_04026","SJAG_02592","SJAG_00870","SJAG_00210","SJAG_00781","SJAG_03646","SJAG_01370","SJAG_03081","SJAG_00472","SJAG_04312","SJAG_02045","SJAG_02921","SJAG_01754","SJAG_01509"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97994,105238,106479,107234,107556,112815,115013],"is_not":false,"summary":null,"term":"GO:0000747"},{"annotations":[92873,98082],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000755"},{"annotations":[111704,100513,89451,108447,94383,88629,102307,102308],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1904541"},{"annotations":[98773],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0031141"},{"annotations":[115977],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0031142"},{"annotations":[89568,116532,106652,118623,116874,88379],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0010514"},{"annotations":[88108,91744,79000,91353,99579,117337,111853],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000742"},{"annotations":[114711,99338,99256,88610,92874,98645],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1904600"},{"annotations":[93577,92448,101984,96750,105284,89165,116956,102725],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0031138"},{"annotations":[95521],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0140538"},{"annotations":[94590,107025,93287,114859,115924,104866,88556,109394,106282,100905,106185,107222,91767,106871,94730,102211,116460],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0010515"},{"annotations":[93684],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0090029"},{"annotations":[99593,76716,91745,88110,97938],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000743"},{"annotations":[93542,88187],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0071432"},{"annotations":[106655,92547,97400,89590,96740,93685],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071507"},{"annotations":[71249],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0000750"},{"annotations":[78243,110578,92714,96730,95655],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0032220"},{"annotations":[100489,102119,111761,105286,107509,98911,99803],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0031139"},{"annotations":[119485,109187,99860,107426,88201,100862,104807,101752,103730,108956,116667,119486],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1900237"},{"annotations":[118434],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0031137"},{"annotations":[105894],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0000749"},{"annotations":[115980,106755,91210,111754],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:0032005"}]},"cv_name":"biological_process","definition":"A conjugation process that results in the union of cellular and genetic information from compatible mating types. 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id: MONDO:0011212
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sensorineural hearing loss, retinal pigment epithelium lesions, discolored teeth","secondary_identifiers":["OMIM:602340","UMLS:C1865645","MEDGEN:356334","MESH:C566560"],"synonyms":[{"name":"sensorineural hearing loss, retinal pigment epithelium lesions, discolored teeth","type":"exact"}],"termid":"MONDO:0011212","xrefs":{"Monarch":{"xref_id":"0011212"}}}


id: MONDO:0010713
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare, hereditary, primary immunodeficiency due to a complement cascade protein anomaly characterized by significantly increased susceptibility to Neisseria species infections. It only affects males, typically presenting with severe or fulminant meningococcal disease.","definition_xrefs":["Orphanet:2966"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn error of immunity","termid":"MONDO:0003778"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"properdin deficiency, X-linked","secondary_identifiers":["DOID:0111768","MEDGEN:333322","UMLS:C1839454","GARD:4513","MESH:C537241","SCTID:81166004","OMIM:312060","NANDO:2200789","ICD9:279.8"],"synonyms":[{"name":"CFPD","type":"related"},{"name":"PFD","type":"related"},{"name":"complement Factor properdin deficiency","type":"related"},{"name":"properdin P Factor deficiency","type":"related"},{"name":"properdin deficiency, X-linked","type":"exact"},{"name":"properdin deficiency, X-linked, X-linked recessive","type":"exact"},{"name":"properdin deficiency, type 1","type":"related"},{"name":"properdin deficiency, type 2","type":"related"},{"name":"properdin deficiency, type 3","type":"related"}],"termid":"MONDO:0010713","xrefs":{"Monarch":{"xref_id":"0010713"}}}


id: PBO:0083997
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), isozyme 2; involved in glycolysis and gluconeogenesis; tetramer that catalyzes reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in cytoplasm and cell wall; protein abundance increases in response to DNA replication stress; GAPDH-derived antimicrobial peptides are active against a wide variety of wine-related yeasts and bateria; TDH2 has a paralog, TDH3, that arose from the whole genome duplication","termid":"PBO:0083997"}


id: MONDO:1011402
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Type 2 diabetes mellitus that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diabetes mellitus, non-human animal","termid":"MONDO:1010052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"type 2 diabetes mellitus, non-human animal","secondary_identifiers":["OMIA:000284"],"termid":"MONDO:1011402","xrefs":{"Monarch":{"xref_id":"1011402"}}}


id: PBO:0016999
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NifU-like protein iron-sulfur cluster assembly protein Nfu1 (predicted)","termid":"PBO:0016999"}


id: PBO:0000540
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.4.21.-","termid":"PBO:0000540"}


id: PBO:0071506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L34 pseudogene 9","termid":"PBO:0071506"}


id: PBO:0080652
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WEE1 pseudogene 1","termid":"PBO:0080652"}


id: PBO:0051920
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"integrin subunit beta 3 binding protein","termid":"PBO:0051920"}


id: PBO:0046746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exocyst complex component 3 like 1","termid":"PBO:0046746"}


id: MONDO:0009916
data:
  {"annotated_genes":["SJAG_00630"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87298],"is_not":false,"summary":null,"term":"MONDO:0009916"}]},"cv_name":"mondo","definition":"Decreased activity of the steroidogenic enzyme, 17-beta-hydroxysteroid dehydrogenase, associated with mutation(s) in the HSD17B3 gene, leading to reduced testosterone production.","definition_xrefs":["NCIT:C120203"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"46,XY disorder of sex development","termid":"MONDO:0020040"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00630":null},"genotype_count":0,"is_obsolete":false,"name":"46,XY disorder of sex development due to 17-beta-hydroxysteroid dehydrogenase 3 deficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:C537805","UMLS:C0268296","MESH:C564868","SCTID:50658006","OMIM:264300","GARD:5659","NANDO:2200390","icd11.foundation:887793448","DOID:0112248","Orphanet:752","MEDGEN:120626"],"synonyms":[{"name":"17 Beta HSD3 deficiency","type":"exact"},{"name":"17 alpha KSR deficiency","type":"related"},{"name":"17 alpha ketosteroid reductase deficiency of testis","type":"related"},{"name":"17 beta HSD3 deficiency","type":"exact"},{"name":"17 beta hydroxysteroid dehydrogenase III deficiency","type":"related"},{"name":"17-BETA hydroxysteroid dehydrogenase III deficiency","type":"related"},{"name":"17-Beta hydroxysteroid dehydrogenase 3 deficiency","type":"related"},{"name":"17-KSR deficiency","type":"related"},{"name":"17-beta hydroxysteroid dehydrogenase 3 deficiency","type":"related"},{"name":"17-beta-hydroxysteroid dehydrogenase 3 deficiency","type":"exact"},{"name":"17-ketoreductase deficiency","type":"exact"},{"name":"17-ketosteroid reductase deficiency of testis","type":"related"},{"name":"17-ketosteroidreductase deficiency","type":"exact"},{"name":"46,XY disorder of sex development due to 17-beta-hydroxysteroid dehydrogenase 3 deficiency","type":"exact"},{"name":"Male pseudoherma-phroditism with gynecomastia","type":"related"},{"name":"Male pseudohermaphroditism due to 17-beta-hydroxysteroid dehydrogenase 3 deficiency","type":"exact"},{"name":"neutral 17 beta hydroxysteroid oxidoreductase deficiency","type":"related"},{"name":"neutral 17-Beta-hydroxysteroid oxidoreductase deficiency","type":"related"},{"name":"polycystic ovarian disease due to 17-ketosteroid reductase deficiency","type":"related"},{"name":"polycystic ovary syndrome due to 17-ketosteroid reductase deficiency","type":"related"},{"name":"pseudohermaphroditism, Male, with gynecomastia","type":"related"}],"termid":"MONDO:0009916","terms_by_termid":{"MONDO:0009916":null},"xrefs":{"Monarch":{"xref_id":"0009916"}}}


id: PBO:0064479
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA polymerase eta","termid":"PBO:0064479"}


id: GO:0009588
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The sequence of reactions within a cell required to convert absorbed photons from UV-A or blue light into a molecular signal; the UV-A, blue light range is defined as having a wavelength within the range of 315 to 400 nm.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phototransduction","termid":"GO:0007602"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"UV-A, blue light phototransduction","synonyms":[{"name":"blue-sensitive opsin","type":"related"},{"name":"short-wave-sensitive opsin","type":"related"},{"name":"violet-sensitive opsin","type":"related"}],"termid":"GO:0009588"}


id: PBO:0119346
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA export factor Rae1","termid":"PBO:0119346"}


id: MONDO:0017970
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete 46,XY disorder of sex development due to impaired androgen production (obsolete MONDO:0017970)","secondary_identifiers":["Orphanet:325357"],"synonyms":[{"name":"46,XY DSD due to impaired androgen production","type":"exact"}],"termid":"MONDO:0017970","xrefs":{"Monarch":{"xref_id":"0017970"}}}


id: GO:0015356
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete monocarboxylate (lactate, pyruvate, mevalonate) uptake/efflux porter activity (obsolete GO:0015356)","synonyms":[{"name":"monocarboxylate (lactate, pyruvate, mevalonate) uptake/efflux porter activity","type":"exact"}],"termid":"GO:0015356"}


id: GO:0120248
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of an acetylenic compound, any compound which contains a carbon-carbon triple bond (aka C#C).","definition_xrefs":["GOC:krc","DOI:10.1007/978-1-4615-4913-0_3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catabolic process","termid":"GO:0009056"},{"relation_name":"is_a","term_name":"acetylenic compound metabolic process","termid":"GO:0120246"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"acetylenic compound catabolic process","synonyms":[{"name":"alkyne substituted compound breakdown","type":"exact"},{"name":"alkyne substituted compound catabolic process","type":"exact"},{"name":"alkyne substituted compound catabolism","type":"exact"},{"name":"alkyne substituted compound degradation","type":"exact"}],"termid":"GO:0120248"}


id: PBO:0040988
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bolA family member 2","termid":"PBO:0040988"}


id: GO:0075313
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that leads to the development of basidium, a small, specialized club-shaped structure typically bearing four basidiospores at the tips of minute projections. The basidium is unique to Basidiomycetes and distinguishes them from other kinds of fungi.","definition_xrefs":["GOC:di","GOC:mah","GOC:pamgo_curators","GOC:mcc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spore-bearing structure development","termid":"GO:0075259"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"basidium development","termid":"GO:0075313"}


id: PR:O13819
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ymr1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13819"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoinositide 3-phosphatase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC19A8.03","synonyms":[{"name":"Spom972h-ymr1","type":"exact"}],"termid":"PR:O13819"}


id: GO:0043981
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H4 by the addition of an acetyl group to a lysine residue at position 5 of the histone.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H4-K5 acetylation (obsolete GO:0043981)","synonyms":[{"name":"histone H4 acetylation at K5","type":"exact"}],"termid":"GO:0043981"}


id: PBO:0085749
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein kinase; implicated in proteasome function; interacts with TORC1, Ure2 and Gdh2; overexpression leads to hypersensitivity to rapamycin and nuclear accumulation of Gln3; epitope-tagged protein localizes to the cytoplasm","termid":"PBO:0085749"}


id: FYPO:0001041
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of thiamine measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of substance in cell during vegetative growth","termid":"FYPO:0001330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"increased cellular thiamine level","synonyms":[{"name":"increased cellular thiamine level during mitotic cell cycle","type":"related"},{"name":"increased cellular thiamine level during vegetative growth","type":"exact"},{"name":"increased cellular vitamin B1 level","type":"exact"},{"name":"increased thiamine accumulation","type":"related"}],"termid":"FYPO:0001041"}


id: PBO:0028306
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_phosphorylation_during_mitotic_S_phase","termid":"PBO:0028306"}


id: PR:O42897
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 26S proteasome non-ATPase regulatory subunit 3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR10758:SF2","OMA:SCHPO02558"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"26S proteasome regulatory subunit rpn3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC119.01","secondary_identifiers":["UniProtKB:O42897"],"synonyms":[{"name":"Spom972h-PSMD3","type":"exact"}],"termid":"PR:O42897"}


id: MONDO:0010917
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"chondrocalcinosis","termid":"MONDO:0001314"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"chondrocalcinosis 1","secondary_identifiers":["OMIM:600668","GARD:6048","MEDGEN:331527","MESH:C535938","UMLS:C1833499"],"synonyms":[{"name":"CCAL1","type":"exact"},{"name":"chondrocalcinosis 1","type":"exact"},{"name":"chondrocalcinosis with early-onset osteoarthritis","type":"related"}],"termid":"MONDO:0010917","xrefs":{"Monarch":{"xref_id":"0010917"}}}


id: MONDO:0013014
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A spondyloepimetaphyseal dysplasia characterized by severe short stature, facial dysmorphism and characteristic radiographic findings.","definition_xrefs":["Orphanet:171866"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"spondyloepiphyseal dysplasia","termid":"MONDO:0016761"},{"relation_name":"is_a","term_name":"spondyloepimetaphyseal dysplasia","termid":"MONDO:0100510"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"spondyloepimetaphyseal dysplasia, aggrecan type","secondary_identifiers":["MESH:C567558","OMIM:612813","icd11.foundation:1133152894","MEDGEN:411237","UMLS:C2748544","SCTID:719165004","GARD:10513"],"synonyms":[{"name":"SEMD, aggrecan type","type":"exact"},{"name":"SEMDAG","type":"related"},{"name":"spondyloepimetaphyseal dysplasia, aggrecan type","type":"exact"}],"termid":"MONDO:0013014","xrefs":{"Monarch":{"xref_id":"0013014"}}}


id: MONDO:0013621
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"LAMB2-related infantile-onset nephrotic syndrome is a rare primary glomerular disease due to homozygous mutations in LAMB2 gene, characterized by prenatal or early-onset progressive steroid-resistant nephrotic syndrome leading to renal failure, and variable ocular defects including myopia, fundus abnormalities, strabismus or nystagmus, without severe visual impairment or blindness. Patients present in early infancy with massive proteinuria, edema, hypertension, and hyperlipidemia. Psychomotor development is normal.","definition_xrefs":["Orphanet:306507"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial nephrotic syndrome","termid":"MONDO:0002350"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"LAMB2-related infantile-onset nephrotic syndrome","secondary_identifiers":["DOID:0080380","UMLS:C3280113","OMIM:249660","MESH:C565405","MEDGEN:481743","OMIM:614199"],"synonyms":[{"name":"NPHS5","type":"related"},{"name":"mesangial sclerosis, diffuse renal, with ocular abnormalities","type":"exact"},{"name":"nephrotic syndrome, type 5, with or without ocular abnormalities","type":"related"}],"termid":"MONDO:0013621","xrefs":{"Monarch":{"xref_id":"0013621"}}}


id: GO:0042984
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of amyloid precursor protein (APP), the precursor of amyloid-beta.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of glycoprotein biosynthetic process","termid":"GO:0010559"},{"relation_name":"regulates","term_name":"amyloid precursor protein biosynthetic process","termid":"GO:0042983"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of amyloid precursor protein biosynthetic process","synonyms":[{"name":"regulation of APP biosynthesis","type":"exact"},{"name":"regulation of APP biosynthetic process","type":"exact"},{"name":"regulation of amyloid precursor protein anabolism","type":"exact"},{"name":"regulation of amyloid precursor protein biosynthesis","type":"exact"},{"name":"regulation of amyloid precursor protein formation","type":"exact"},{"name":"regulation of amyloid precursor protein synthesis","type":"exact"}],"termid":"GO:0042984"}


id: PBO:0054932
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2346","termid":"PBO:0054932"}


id: GO:0042380
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the formation of both isopentenyl pyrophosphate and dimethylallyl pyrophosphate from (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate.","definition_xrefs":["GOC:js","PMID:11818558"],"gene_count":0,"genotype_count":0,"name":"obsolete hydroxymethylbutenyl pyrophosphate reductase activity (obsolete GO:0042380)","synonyms":[{"name":"(E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming)","type":"exact"}],"termid":"GO:0042380"}


id: GO:0030428
data:
  {"annotated_genes":["SJAG_02022","SJAG_02222","SJAG_00669","SJAG_01774","SJAG_03704","SJAG_02916","SJAG_01171","SJAG_03748","SJAG_03379","SJAG_02169","SJAG_04322","SJAG_04666","SJAG_00652","SJAG_04690","SJAG_03436","SJAG_04901","SJAG_00610","SJAG_03655","SJAG_01718","SJAG_02379","SJAG_01754","SJAG_00667","SJAG_03705","SJAG_01855","SJAG_00514","SJAG_01888","SJAG_03625","SJAG_01196","SJAG_03453","SJAG_01787","SJAG_02215","SJAG_02166","SJAG_00442","SJAG_01181","SJAG_03753","SJAG_01799","SJAG_04668","SJAG_01456","SJAG_01453","SJAG_03581","SJAG_05001","SJAG_04776","SJAG_05285","SJAG_04771"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[87883,102299,105030,106650,106475,110486,88625,97550,72048,97216,91101,89405,91072,111364,113462,116953,88816,96017,103852,87865,118293,70575,93921,111749,90086,100101,94093,107594,114763,91197,114427,94935,100549,92772,102300,92753,101289,92622,103002,91121,103205,118279],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000935"},{"annotations":[116206,100511],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000936"}]},"cv_name":"cellular_component","definition":"A structure composed of peptidoglycan and often chitin in addition to other materials. It usually forms perpendicular to the long axis of a cell or hypha and grows centripetally from the cell wall to the center of the cell and often functions in the compartmentalization of a cell into two daughter cells.","definition_xrefs":["ISBN:0471940526","GOC:clt"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"}],"gene_count":44,"genes_by_uniquename":{"SJAG_00442":null,"SJAG_00514":null,"SJAG_00610":null,"SJAG_00652":null,"SJAG_00667":null,"SJAG_00669":null,"SJAG_01171":null,"SJAG_01181":null,"SJAG_01196":null,"SJAG_01453":null,"SJAG_01456":null,"SJAG_01718":null,"SJAG_01754":null,"SJAG_01774":null,"SJAG_01787":null,"SJAG_01799":null,"SJAG_01855":null,"SJAG_01888":null,"SJAG_02022":null,"SJAG_02166":null,"SJAG_02169":null,"SJAG_02215":null,"SJAG_02222":null,"SJAG_02379":null,"SJAG_02916":null,"SJAG_03379":null,"SJAG_03436":null,"SJAG_03453":null,"SJAG_03581":null,"SJAG_03625":null,"SJAG_03655":null,"SJAG_03704":null,"SJAG_03705":null,"SJAG_03748":null,"SJAG_03753":null,"SJAG_04322":null,"SJAG_04666":null,"SJAG_04668":null,"SJAG_04690":null,"SJAG_04771":null,"SJAG_04776":null,"SJAG_04901":null,"SJAG_05001":null,"SJAG_05285":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"cell septum","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"cross wall","type":"exact"},{"name":"septum","type":"broad"}],"termid":"GO:0030428","terms_by_termid":{"GO:0000935":null,"GO:0000936":null}}


id: PBO:0012269
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"20S proteiasome complex subunit alpha 4 Pre6","termid":"PBO:0012269"}


id: PBO:0045115
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"doublesex and mab-3 related transcription factor 2","termid":"PBO:0045115"}


id: MONDO:0041775
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"iris disorder","termid":"MONDO:0002289"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"intraoperative floppy iris syndrome","secondary_identifiers":["SCTID:418801006","UMLS:C1688637","MEDGEN:739048"],"synonyms":[{"name":"intraoperative floppy iris syndrome","type":"exact"}],"termid":"MONDO:0041775","xrefs":{"Monarch":{"xref_id":"0041775"}}}


id: PR:O94756
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- meu14 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94756"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic expression up-regulated protein 14 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1347.03","synonyms":[{"name":"Spom972h-meu14","type":"exact"}],"termid":"PR:O94756"}


id: PBO:0003886
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S9 (predicted)","termid":"PBO:0003886"}


id: PBO:0046192
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ELMO domain containing 3","termid":"PBO:0046192"}


id: GO:0075330
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of symbiont arbuscule formation for nutrient acquisition from host. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of formation of structure involved in a symbiotic process","termid":"GO:0044149"},{"relation_name":"is_a","term_name":"regulation of arbuscule formation for nutrient acquisition from host","termid":"GO:0075329"},{"relation_name":"positively_regulates","term_name":"formation of arbuscule for nutrient acquisition","termid":"GO:0075328"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of arbuscule formation for nutrient acquisition from host","termid":"GO:0075330"}


id: PATO:0002116
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A composition quality inhering in exudate by virtue of the bearer's containing fibrin.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"composition","termid":"PATO:0000025"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibrinopurulent","termid":"PATO:0002116"}


id: GO:0060919
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of auxins from outside of a cell into a cell.","definition_xrefs":["PMID:22773749"],"direct_ancestors":[{"relation_name":"is_a","term_name":"auxin transport","termid":"GO:0060918"},{"relation_name":"is_a","term_name":"import across plasma membrane","termid":"GO:0098739"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"auxin import into cell","synonyms":[{"name":"auxin influx","type":"broad"}],"termid":"GO:0060919"}


id: PR:Q10212
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein MEMO1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01586","PANTHER:PTHR11060:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MEMO1 family protein C4H3.04c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4H3.04c","secondary_identifiers":["UniProtKB:Q10212"],"synonyms":[{"name":"Spom972h-MEMO1","type":"exact"}],"termid":"PR:Q10212"}


id: FYPO:0003315
data:
  {"alleles_by_uniquename":{"SJAG_04703:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04703","name":"for3delta","uniquename":"SJAG_04703:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[119684],"is_not":false,"summary":null,"term":"FYPO:0003315"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the cell does not contain detectable actin cables.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actin cables","termid":"FYPO:0002435"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04703":null},"genotype_count":1,"genotypes_by_uniquename":{"for3delta":{"display_name":"for3delta","display_uniquename":"for3delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04703:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0004803","FYPO:0001320"],"is_obsolete":false,"name":"actin cables absent from cell","references_by_uniquename":{"PMID:30726171":null},"single_locus_annotated_genes":["SJAG_04703"],"single_locus_genotype_uniquenames":["for3delta"],"synonyms":[{"name":"absent actin cables","type":"exact"},{"name":"actin cables absent from cell during mitotic cell cycle","type":"related"},{"name":"actin cables absent from cell during vegetative growth","type":"exact"},{"name":"formin-nucleated actin cables absent from cell","type":"exact"}],"termid":"FYPO:0003315","terms_by_termid":{"FYPO:0003315":null}}


id: PBO:0018093
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA specific adenosine-37 deaminase Tad1 (predicted)","termid":"PBO:0018093"}


id: PBO:0057942
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3667","termid":"PBO:0057942"}


id: PBO:0036557
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline dehydrogenase Put1 (predicted)","termid":"PBO:0036557"}


id: PBO:0011082
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"para-hydroxybenzoate--polyprenyltransferase Ppt1","termid":"PBO:0011082"}


id: FYPO:0002198
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cell population phenotype in which all cells in the population are viable but have abnormal cell shape, in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete viable vegetative cell population with abnormal cell shape (obsolete FYPO:0002198)","synonyms":[{"name":"viable, abnormally shaped vegetative cell population","type":"exact"}],"termid":"FYPO:0002198"}


id: PBO:0013817
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S acidic ribosomal protein A4","termid":"PBO:0013817"}


id: PBO:0005316
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin C-terminal hydrolase Ubp1","termid":"PBO:0005316"}


id: PBO:0047601
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FHF complex subunit HOOK interacting protein 1B","termid":"PBO:0047601"}


id: PBO:0042992
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CHEK2 pseudogene 5","termid":"PBO:0042992"}


id: GO:0070695
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that is composed of AKTIP/FTS, FAM160A2/p107FHIP, and one or more members of the Hook family of proteins, HOOK1, HOOK2, and HOOK3. The complex is thought to promote vesicle trafficking and/or fusion, and associates with the homotypic vesicular sorting complex (the HOPS complex).","definition_xrefs":["GOC:mah","PMID:18799622","GOC:ab"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0032991"],"is_obsolete":false,"name":"FHF complex","termid":"GO:0070695"}


id: PBO:0035740
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_level_of_ubiquitinated_protein_in_cell_during_cellular_response_to_methyl_methanesulfonate","termid":"PBO:0035740"}


id: PR:Q9P7X0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR13337:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP23A10.16","secondary_identifiers":["UniProtKB:Q9P7X0"],"synonyms":[{"name":"CybS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SPBP23A10.16","type":"related"},{"name":"Spom972h-SDHD","type":"exact"},{"name":"succinate-ubiquinone reductase membrane anchor subunit (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"tim18","type":"related"}],"termid":"PR:Q9P7X0"}


id: PR:Q09100
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rnp24 gene.","definition_xrefs":["UniProtKB:Q09100","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein rnp24 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3G6.04","synonyms":[{"name":"Spom972h-rnp24","type":"exact"}],"termid":"PR:Q09100"}


id: PBO:0024836
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pumilio family RNA-binding protein Nop9 (predicted)","termid":"PBO:0024836"}


id: GO:0033751
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: linoleate + O2 = (9Z,12Z)-(7S,8S)-dihydroxyoctadeca-9,12-dienoate.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete linoleate 8R-lipoxygenase (obsolete GO:0033751)","synonyms":[{"name":"5,8-linoleate diol synthase (bifunctional enzyme)","type":"related"},{"name":"7,8-linoleate diol synthase (bifunctional enzyme)","type":"related"},{"name":"linoleate diol synthase activity","type":"related"}],"termid":"GO:0033751"}


id: PBO:0049970
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HIG1 hypoxia inducible domain family member 1A pseudogene 16","termid":"PBO:0049970"}


id: GO:0015958
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a bis(5'-nucleosidyl) oligophosphate, a compound formed of two nucleosides joined together through their 5' carbons by a chain of phosphate molecules.","definition_xrefs":["PMID:10970777","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide catabolic process","termid":"GO:0009166"},{"relation_name":"is_a","term_name":"bis(5'-nucleosidyl) oligophosphate metabolic process","termid":"GO:0015956"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"bis(5'-nucleosidyl) oligophosphate catabolic process","synonyms":[{"name":"bis(5'-nucleosidyl) oligophosphate breakdown","type":"exact"},{"name":"bis(5'-nucleosidyl) oligophosphate catabolism","type":"exact"},{"name":"bis(5'-nucleosidyl) oligophosphate degradation","type":"exact"}],"termid":"GO:0015958"}


id: PBO:0062613
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 10 subfamily V member 1","termid":"PBO:0062613"}


id: PBO:0091237
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aminomethyltransferase-like and DUF1989 family protein, implicated in urea metabolism","termid":"PBO:0091237"}


id: PBO:0042028
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 85C","termid":"PBO:0042028"}


id: PBO:0090056
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COPII-coated vesicle component Erp2/3/4","termid":"PBO:0090056"}


id: GO:0014734
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The enlargement or overgrowth of all or part of an organ due to an increase in size (not length) of individual muscle fibers without cell division. In the case of skeletal muscle cells this happens due to the additional synthesis of sarcomeric proteins and assembly of myofibrils.","definition_xrefs":["GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"striated muscle hypertrophy","termid":"GO:0014897"},{"relation_name":"is_a","term_name":"skeletal muscle adaptation","termid":"GO:0043501"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"skeletal muscle hypertrophy","termid":"GO:0014734"}


id: MONDO:0018082
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Aorto-ventricular tunnel is a congenital, extracardiac channel which connects the ascending aorta above the sinotubular junction to the cavity of the left, or (less commonly) right ventricle.","definition_xrefs":["Orphanet:3400"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital anomaly of the great arteries","termid":"MONDO:0020292"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aorto-ventricular tunnel","secondary_identifiers":["HP:0011627","MESH:D000082903","GARD:18798","MEDGEN:868852","UMLS:C4023262"],"synonyms":[{"name":"aorto-ventricular tunnel","type":"exact"},{"name":"aorto-ventricular tunnel (disease)","type":"exact"}],"termid":"MONDO:0018082","xrefs":{"Monarch":{"xref_id":"0018082"}}}


id: GO:1900946
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of isoprene metabolic process.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of isoprenoid metabolic process","termid":"GO:0045828"},{"relation_name":"is_a","term_name":"positive regulation of olefin metabolic process","termid":"GO:1900910"},{"relation_name":"is_a","term_name":"regulation of isoprene metabolic process","termid":"GO:1900944"},{"relation_name":"positively_regulates","term_name":"isoprene metabolic process","termid":"GO:0043611"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"positively_regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"positive regulation of isoprene metabolic process","synonyms":[{"name":"activation of 2-methyl-1,3-butadiene metabolic process","type":"narrow"},{"name":"activation of 2-methyl-1,3-butadiene metabolism","type":"narrow"},{"name":"activation of hemiterpene metabolic process","type":"narrow"},{"name":"activation of hemiterpene metabolism","type":"narrow"},{"name":"activation of isoprene metabolic process","type":"narrow"},{"name":"activation of isoprene metabolism","type":"narrow"},{"name":"positive regulation of 2-methyl-1,3-butadiene metabolic process","type":"exact"},{"name":"positive regulation of 2-methyl-1,3-butadiene metabolism","type":"exact"},{"name":"positive regulation of hemiterpene metabolic process","type":"exact"},{"name":"positive regulation of hemiterpene metabolism","type":"exact"},{"name":"positive regulation of isoprene metabolism","type":"exact"},{"name":"up regulation of 2-methyl-1,3-butadiene metabolic process","type":"exact"},{"name":"up regulation of 2-methyl-1,3-butadiene metabolism","type":"exact"},{"name":"up regulation of hemiterpene metabolic process","type":"exact"},{"name":"up regulation of hemiterpene metabolism","type":"exact"},{"name":"up regulation of isoprene metabolic process","type":"exact"},{"name":"up regulation of isoprene metabolism","type":"exact"},{"name":"up-regulation of 2-methyl-1,3-butadiene metabolic process","type":"exact"},{"name":"up-regulation of 2-methyl-1,3-butadiene metabolism","type":"exact"},{"name":"up-regulation of hemiterpene metabolic process","type":"exact"},{"name":"up-regulation of hemiterpene metabolism","type":"exact"},{"name":"up-regulation of isoprene metabolic process","type":"exact"},{"name":"up-regulation of isoprene metabolism","type":"exact"},{"name":"upregulation of 2-methyl-1,3-butadiene metabolic process","type":"exact"},{"name":"upregulation of 2-methyl-1,3-butadiene metabolism","type":"exact"},{"name":"upregulation of hemiterpene metabolic process","type":"exact"},{"name":"upregulation of hemiterpene metabolism","type":"exact"},{"name":"upregulation of isoprene metabolic process","type":"exact"},{"name":"upregulation of isoprene metabolism","type":"exact"}],"termid":"GO:1900946"}


id: PBO:0072024
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S9","termid":"PBO:0072024"}


id: MONDO:0006517
data:
  {"annotated_genes":["SJAG_03689"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86711],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011014"}]},"cv_name":"mondo","definition":"A malignant tumor that occurs in children. Representative examples include soft tissue and bone sarcomas (e.g. osteosarcoma) and embryonal neoplasms (e.g. hepatoblastoma and rhabdoid tumor).","definition_xrefs":["NCIT:C4005"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cancer","termid":"MONDO:0004992"},{"relation_name":"is_a","term_name":"childhood neoplasm","termid":"MONDO:0021079"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03689":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"childhood malignant neoplasm","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C0278704","EFO:1000654","MEDGEN:82962"],"synonyms":[{"name":"childhood cancer","type":"exact"},{"name":"childhood malignant neoplasm","type":"exact"},{"name":"childhood neoplasm, malignant","type":"exact"},{"name":"malignant childhood neoplasm","type":"exact"},{"name":"malignant childhood tumor","type":"exact"},{"name":"malignant childhood tumour","type":"exact"},{"name":"malignant neoplasm","type":"narrow"},{"name":"malignant paediatric neoplasm","type":"exact"},{"name":"malignant paediatric tumour","type":"exact"},{"name":"malignant pediatric neoplasm","type":"exact"},{"name":"malignant pediatric tumor","type":"exact"},{"name":"paediatric cancer","type":"exact"},{"name":"pediatric cancer","type":"exact"}],"termid":"MONDO:0006517","terms_by_termid":{"MONDO:0011014":null},"xrefs":{"Monarch":{"xref_id":"0006517"}}}


id: MONDO:0044977
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete disease of receptor activity (obsolete MONDO:0044977)","termid":"MONDO:0044977","xrefs":{"Monarch":{"xref_id":"0044977"}}}


id: MONDO:0020772
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete adolescent/adult-onset epilepsy syndrome (obsolete MONDO:0100030)","termid":"MONDO:0100030"},{"relation_name":"excluded_subClassOf","term_name":"juvenile absence epilepsy","termid":"MONDO:0800453"},{"relation_name":"is_a","term_name":"epilepsy, juvenile absence, susceptibility to","termid":"MONDO:1030001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epilepsy, juvenile absence, susceptibility to, 1","secondary_identifiers":["OMIM:607631","DOID:0111324","MEDGEN:413426","UMLS:C2750892"],"synonyms":[{"name":"EJA1","type":"exact"},{"name":"EPILEPSY, JUVENILE ABSENCE, SUSCEPTIBILITY TO, 1","type":"exact"},{"name":"JAE1","type":"exact"},{"name":"epilepsy, juvenile absence, susceptibility to, type 1","type":"exact"},{"name":"susceptibility to juvenile absence epilepsy 1","type":"exact"}],"termid":"MONDO:0020772","xrefs":{"Monarch":{"xref_id":"0020772"}}}


id: PBO:0045476
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aspartate rich 1","termid":"PBO:0045476"}


id: GO:1905786
data:
  {"annotated_genes":["SJAG_00071"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89301],"is_not":false,"summary":null,"term":"GO:1905786"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of anaphase-promoting complex-dependent catabolic process.","definition_xrefs":["GOC:TermGenie","PMID:10921876","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of proteasomal ubiquitin-dependent protein catabolic process","termid":"GO:0032436"},{"relation_name":"is_a","term_name":"regulation of anaphase-promoting complex-dependent catabolic process","termid":"GO:1905784"},{"relation_name":"positively_regulates","term_name":"anaphase-promoting complex-dependent catabolic process","termid":"GO:0031145"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00071":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0030163"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0030163"}],"interesting_parent_ids":["GO:0030163","GO:0008150"],"is_obsolete":false,"name":"positive regulation of anaphase-promoting complex-dependent catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1905786","terms_by_termid":{"GO:1905786":null}}


id: PBO:0002697
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoinositide phospholipase C Plc1","termid":"PBO:0002697"}


id: PBO:0057789
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3116-1","termid":"PBO:0057789"}


id: MONDO:0044220
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete blood group, 1 system (obsolete MONDO:0044220)","secondary_identifiers":["OMIM:110800"],"synonyms":[{"name":"I blood Group system","type":"related"},{"name":"II","type":"related"},{"name":"II blood Group system","type":"related"},{"name":"adult I phenotype","type":"related"},{"name":"blood group, I system","type":"related"},{"name":"blood group, Ii","type":"exact"}],"termid":"MONDO:0044220","xrefs":{"Monarch":{"xref_id":"0044220"}}}


id: GO:0045713
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of low-density lipoprotein receptors, cell surface proteins that mediate the endocytosis of low-density lipoprotein particles by cells.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete low-density lipoprotein particle receptor biosynthetic process (obsolete GO:0045713)","synonyms":[{"name":"LDLr biosynthesis","type":"exact"},{"name":"LDLr biosynthetic process","type":"exact"},{"name":"low-density lipoprotein receptor anabolism","type":"exact"},{"name":"low-density lipoprotein receptor biosynthesis","type":"exact"},{"name":"low-density lipoprotein receptor biosynthetic process","type":"exact"},{"name":"low-density lipoprotein receptor formation","type":"exact"},{"name":"low-density lipoprotein receptor synthesis","type":"exact"}],"termid":"GO:0045713"}


id: GO:0042101
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that contains a disulfide-linked heterodimer of T cell receptor (TCR) chains, which are members of the immunoglobulin superfamily, and mediates antigen recognition, ultimately resulting in T cell activation. The TCR heterodimer is associated with the CD3 complex, which consists of the nonpolymorphic polypeptides gamma, delta, epsilon, zeta, and, in some cases, eta (an RNA splice variant of zeta) or Fc epsilon chains.","definition_xrefs":["GOC:mah","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane signaling receptor complex","termid":"GO:0098802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005886"],"is_obsolete":false,"name":"T cell receptor complex","secondary_identifiers":["Wikipedia:T_cell_receptor"],"synonyms":[{"name":"T lymphocyte receptor complex","type":"exact"},{"name":"T-cell receptor complex","type":"exact"},{"name":"T-lymphocyte receptor complex","type":"exact"},{"name":"TCR","type":"related"},{"name":"TCR complex","type":"exact"}],"termid":"GO:0042101"}


id: GO:0021795
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of cells from one site to another in the cerebral cortex.","definition_xrefs":["GOC:jid","GOC:cls","GOC:dph","GO_REF:0000021","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"telencephalon cell migration","termid":"GO:0022029"},{"relation_name":"part_of","term_name":"cerebral cortex development","termid":"GO:0021987"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cerebral cortex cell migration","termid":"GO:0021795"}


id: PBO:0080965
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger and BTB domain containing 7B","termid":"PBO:0080965"}


id: PBO:0087969
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transverse filament protein of the synaptonemal complex; required for normal levels of meiotic recombination and pairing between homologous chromosome during meiosis; required for meiotic recombination between non-allelc sites; potential Cdc28p substrate","termid":"PBO:0087969"}


id: PBO:0077511
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMEM229B pseudogene 1","termid":"PBO:0077511"}


id: PBO:0031482
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cellular_pigment_accumulation","termid":"PBO:0031482"}


id: GO:0007577
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. This process is a type of programmed cell death pathway similar to apoptosis and necrosis observed in multicellular organisms. It is characterized by cellular enlargement (necrosis) and presence of many autophagic bodies along with degradation of cellular components (nucleus, Golgi, ER), protein, DNA and RNA.","definition_xrefs":["GOC:sgd_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete autophagic death (sensu Saccharomyces) (obsolete GO:0007577)","synonyms":[{"name":"autophagic death (sensu Saccharomyces)","type":"exact"}],"termid":"GO:0007577"}


id: PBO:0031538
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_regulation_of_molecular_function","termid":"PBO:0031538"}


id: SO:0001872
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region of a chromosome, where the chromosome has undergone a large structural rearrangement that altered the genome organization. There is no longer synteny to the reference genome.","definition_xrefs":["NCBI:th","PMID:18564416"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biological_region","termid":"SO:0001411"},{"relation_name":"is_a","term_name":"structural_alteration","termid":"SO:0001785"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rearrangement_region","synonyms":[{"name":"rearrangement region","type":"exact"}],"termid":"SO:0001872"}


id: PBO:0071881
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS3A pseudogene 19","termid":"PBO:0071881"}


id: GO:0010745
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of macrophage derived foam cell differentiation. Macrophage derived foam cell differentiation is the process in which a macrophage acquires the specialized features of a foam cell. A foam cell is a type of cell containing lipids in small vacuoles and typically seen in atherosclerotic lesions, as well as other conditions.","definition_xrefs":["GOC:add","GOC:BHF","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of macrophage derived foam cell differentiation","termid":"GO:0010743"},{"relation_name":"is_a","term_name":"negative regulation of cell differentiation","termid":"GO:0045596"},{"relation_name":"negatively_regulates","term_name":"macrophage derived foam cell differentiation","termid":"GO:0010742"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of macrophage derived foam cell differentiation","termid":"GO:0010745"}


id: GO:0045689
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of antipodal cell differentiation.","definition_xrefs":["GOC:go_curators","GOC:mtg_plant"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell differentiation","termid":"GO:0045596"},{"relation_name":"is_a","term_name":"regulation of antipodal cell differentiation","termid":"GO:0045688"},{"relation_name":"negatively_regulates","term_name":"antipodal cell differentiation","termid":"GO:0009557"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of antipodal cell differentiation","synonyms":[{"name":"down regulation of antipodal cell differentiation","type":"exact"},{"name":"down-regulation of antipodal cell differentiation","type":"exact"},{"name":"downregulation of antipodal cell differentiation","type":"exact"},{"name":"inhibition of antipodal cell differentiation","type":"narrow"}],"termid":"GO:0045689"}


id: GO:0031432
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to titin, any of a family of giant proteins found in striated and smooth muscle. In striated muscle, single titin molecules span half the sarcomere, with their N- and C-termini in the Z-disc and M-line, respectively.","definition_xrefs":["PMID:10481174","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoskeletal protein binding","termid":"GO:0008092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0008092"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674","GO:0008092"],"is_obsolete":false,"name":"titin binding","termid":"GO:0031432"}


id: GO:0061762
data:
  {"annotated_genes":["SJAG_03501","SJAG_03486","SJAG_03802"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[116531,116871,118622],"is_not":false,"summary":null,"term":"GO:0061762"}]},"cv_name":"biological_process","definition":"The series of molecular signals in which calmodulin-dependent protein kinase activity enabled by a CAMKK directly activates an AMPK. The cascade begins with calmodulin binding calcium which in turn binds CAMKK enabling its calmodulin-dependent protein kinase activity. The cascade ends with AMP-activated protein kinase activity.","definition_xrefs":["GOC:pad","GOC:dph","PMID:23010169","PMID:24709372","GOC:PARL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"calcium-mediated signaling","termid":"GO:0019722"}],"gene_count":3,"genes_by_uniquename":{"SJAG_03486":null,"SJAG_03501":null,"SJAG_03802":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"CAMKK-AMPK signaling cascade","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"stress-activated AMP-activated protein kinase signaling cascade","type":"related"}],"termid":"GO:0061762","terms_by_termid":{"GO:0061762":null}}


id: PATO:0000770
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A coordination quality of inhering in a bearer by virtue of the bearer's lacking skillful and effective interaction of movement.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"coordination","termid":"PATO:0000188"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncoordinated","termid":"PATO:0000770"}


id: GO:0046427
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the JAK-STAT signaling pathway activity.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of receptor signaling pathway via JAK-STAT","termid":"GO:0046425"},{"relation_name":"is_a","term_name":"positive regulation of receptor signaling pathway via STAT","termid":"GO:1904894"},{"relation_name":"positively_regulates","term_name":"cell surface receptor signaling pathway via JAK-STAT","termid":"GO:0007259"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of receptor signaling pathway via JAK-STAT","secondary_identifiers":["GO:2000366","Reactome:R-HSA-8849474"],"synonyms":[{"name":"activation of JAK-STAT cascade","type":"narrow"},{"name":"positive regulation of STAT protein import into nucleus","type":"narrow"},{"name":"positive regulation of STAT protein nuclear translocation","type":"narrow"},{"name":"stimulation of JAK-STAT cascade","type":"narrow"},{"name":"up regulation of JAK-STAT cascade","type":"exact"},{"name":"up-regulation of JAK-STAT cascade","type":"exact"},{"name":"upregulation of JAK-STAT cascade","type":"exact"}],"termid":"GO:0046427"}


id: GO:0034986
data:
  {"annotated_genes":["SJAG_01418","SJAG_03862"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[100942,114267],"is_not":false,"summary":null,"term":"GO:0034986"}]},"cv_name":"molecular_function","definition":"Directly binding to and delivering iron ions to a target protein.","definition_xrefs":["GOC:vk","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metallochaperone activity","termid":"GO:0016530"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01418":null,"SJAG_03862":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140104"}],"interesting_parent_ids":["GO:0003674","GO:0140104"],"is_obsolete":false,"name":"iron chaperone activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-9854984","Reactome:R-HSA-9866272","Reactome:R-HSA-9854405"],"synonyms":[{"name":"iron carrier activity","type":"exact"}],"termid":"GO:0034986","terms_by_termid":{"GO:0034986":null}}


id: SO:0000934
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A miRNA target site is a binding site where the molecule is a micro RNA.","definition_xrefs":["FB:cds"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide_binding_site","termid":"SO:0001655"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"miRNA_target_site","synonyms":[{"name":"miRNA target site","type":"exact"}],"termid":"SO:0000934"}


id: PBO:0039570
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 65","termid":"PBO:0039570"}


id: PBO:0038523
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP binding cassette subfamily G member 2 (Junior blood group)","termid":"PBO:0038523"}


id: GO:1990430
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a protein that is part of an extracellular matrix.","definition_xrefs":["PMID:22355679"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"extracellular matrix protein binding","termid":"GO:1990430"}


id: MONDO:0015058
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Waterhouse-Friderichsen syndrome (obsolete MONDO:0015058)","termid":"MONDO:0015058","xrefs":{"Monarch":{"xref_id":"0015058"}}}


id: MONDO:0006671
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Infections with bacteria of the genus bacteroides.","definition_xrefs":["MESH:D001442"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Bacteroidaceae infectious disease","termid":"MONDO:0006705"},{"relation_name":"is_a","term_name":"anaerobic bacteria infectious disease","termid":"MONDO:0024389"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Bacteroides infectious disease","secondary_identifiers":["SCTID:2918000","UMLS:C0004669","EFO:1000832","ICD9:041.84","MEDGEN:2164"],"synonyms":[{"name":"Bacteroides caused disease or disorder","type":"exact"},{"name":"Bacteroides disease or disorder","type":"exact"},{"name":"Bacteroides infection","type":"related"},{"name":"infection caused by Bacteroides","type":"related"},{"name":"infection due to Bacteroides","type":"exact"},{"name":"infection, Bacteroides","type":"related"},{"name":"infections, Bacteroides","type":"related"}],"termid":"MONDO:0006671","xrefs":{"Monarch":{"xref_id":"0006671"}}}


id: PBO:0069096
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 343, pseudogene","termid":"PBO:0069096"}


id: PBO:0068400
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 217","termid":"PBO:0068400"}


id: GO:1903162
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Any serine transmembrane transporter activity that is involved in serine import into cell.","definition_xrefs":["GOC:TermGenie","GO_REF:0000061","ISBN:0-8249-3695-6"],"gene_count":0,"genotype_count":0,"name":"obsolete serine transmembrane transporter activity involved in serine import into cell (obsolete GO:1903162)","synonyms":[{"name":"serine transmembrane transporter activity involved in serine import into cell","type":"exact"}],"termid":"GO:1903162"}


id: PBO:0047400
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FBXO38 divergent transcript","termid":"PBO:0047400"}


id: PBO:0027451
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-loss_of_viability_at_low_temperature","termid":"PBO:0027451"}


id: PBO:0075290
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorting nexin family member 30","termid":"PBO:0075290"}


id: GO:0006078
data:
  {"annotated_genes":["SJAG_04073","SJAG_02446","SJAG_02590"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[63587,75565,77179],"is_not":false,"summary":null,"term":"GO:0006078"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of (1->6)-beta-D-glucans.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"(1->6)-beta-D-glucan metabolic process","termid":"GO:0006077"},{"relation_name":"is_a","term_name":"beta-glucan biosynthetic process","termid":"GO:0051274"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02446":null,"SJAG_02590":null,"SJAG_04073":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"(1->6)-beta-D-glucan biosynthetic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null},"synonyms":[{"name":"1,6-beta-glucan anabolism","type":"exact"},{"name":"1,6-beta-glucan biosynthesis","type":"exact"},{"name":"1,6-beta-glucan biosynthetic process","type":"exact"},{"name":"1,6-beta-glucan formation","type":"exact"},{"name":"1,6-beta-glucan synthesis","type":"exact"},{"name":"beta-1,6 glucan anabolism","type":"exact"},{"name":"beta-1,6 glucan biosynthesis","type":"exact"},{"name":"beta-1,6 glucan biosynthetic process","type":"exact"},{"name":"beta-1,6 glucan formation","type":"exact"},{"name":"beta-1,6 glucan synthesis","type":"exact"}],"termid":"GO:0006078","terms_by_termid":{"GO:0006078":null}}


id: MONDO:0000047
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete immunodeficiency with hyper-IgM (obsolete MONDO:0000047)","termid":"MONDO:0000047","xrefs":{"Monarch":{"xref_id":"0000047"}}}


id: PBO:0083203
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; completely overlaps the verified gene YFR009W; identified by expression profiling and mass spectrometry","termid":"PBO:0083203"}


id: GO:0045767
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of anti-apoptosis.","definition_xrefs":["GOC:mtg_apoptosis","GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of anti-apoptosis (obsolete GO:0045767)","synonyms":[{"name":"regulation of anti-apoptosis","type":"exact"}],"termid":"GO:0045767"}


id: PBO:0116473
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tdk family toxin-antidote meiotic driver","termid":"PBO:0116473"}


id: FYPO:0000159
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which chromosome condensation is abnormal. Chromosome condensation is the progressive compaction of dispersed interphase chromatin into threadlike chromosomes prior to mitotic or meiotic nuclear division.","definition_xrefs":["PomBase:mah","GO:0030261"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromosome segregation","termid":"FYPO:0000029"},{"relation_name":"is_a","term_name":"abnormal chromosome organization","termid":"FYPO:0000641"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0000631","FYPO:0000641","FYPO:0001985"],"is_obsolete":false,"name":"abnormal chromosome condensation","secondary_identifiers":["FYPO:0000028"],"synonyms":[{"name":"chromosome condensation defects","type":"exact"}],"termid":"FYPO:0000159"}


id: PR:O94643
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mis17 gene.","definition_xrefs":["UniProtKB:O94643","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinetochore protein mis17 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC21.01","synonyms":[{"name":"Spom972h-mis17","type":"exact"},{"name":"sim4 complex subunit mis17 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94643"}


id: MONDO:1011252
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Keratitis that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"keratitis, non-human animal","termid":"MONDO:1010330"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratitis, dog","secondary_identifiers":["OMIA:001287-9615"],"termid":"MONDO:1011252","xrefs":{"Monarch":{"xref_id":"1011252"}}}


id: GO:0019544
data:
  {"annotated_genes":["SJAG_00495"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[78654],"is_not":false,"summary":null,"term":"GO:0019544"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including glutamate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arginine catabolic process","termid":"GO:0006527"},{"relation_name":"is_a","term_name":"glutamate metabolic process","termid":"GO:0006536"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00495":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006520","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"arginine catabolic process to glutamate","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"arginine breakdown to glutamate","type":"exact"},{"name":"arginine degradation to glutamate","type":"exact"}],"termid":"GO:0019544","terms_by_termid":{"GO:0019544":null}}


id: MONDO:0005922
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Inflammation of the pleura secondary to an infection with Mycobacterium tuberculosis.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extrapulmonary tuberculosis","termid":"MONDO:0000368"},{"relation_name":"is_a","term_name":"pleurisy","termid":"MONDO:0000986"},{"relation_name":"is_a","term_name":"respiratory tract infectious disorder","termid":"MONDO:0024355"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pleural tuberculosis","secondary_identifiers":["ICD9:010.1","ICD9:010.10","DOID:106","ICD10CM:A15.6","ICD9:010.12","ICD9:010.16","ICD9:012.0","ICD9:012.00","UMLS:C0041326","MESH:D014396","MEDGEN:22517","NCIT:C26898","SCTID:186172004","EFO:0007446"],"synonyms":[{"name":"pearly disease","type":"exact"},{"name":"pleura tuberculosis","type":"exact"},{"name":"tuberculosis of pleura","type":"exact"},{"name":"tuberculous pleurisy","type":"exact"},{"name":"tuberculous pleurisy in primary progressive tuberculosis","type":"exact"},{"name":"tuberculous pleuritis","type":"exact"}],"termid":"MONDO:0005922","xrefs":{"Monarch":{"xref_id":"0005922"}}}


id: MONDO:0012259
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Colloid cysts of the third ventricle are non-cancerous brain lesions. The third ventricle is a cavity in the brain that is filled with cerebral spinal fluid (CSF). Colloid cysts can cause blockages resulting in a build up of CSF in the brain (hydrocephalus) and increased pressure. Some colloid cysts are asymptomatic while others cause neurological symptoms, such as headaches, swelling of the optic nerve (papilledema), and drop attacks. When symptoms are present onset tends to be in the third to sixth decade of life. While uncommon, symptoms of colloid cyst can become life threatening.","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"colloid cysts of third ventricle","secondary_identifiers":["OMIM:609363","UMLS:C0266481","MEDGEN:82744","MESH:C535966"],"synonyms":[{"name":"colloid cysts of third ventricle","type":"exact"},{"name":"neuroepithelial cysts of third ventricle","type":"related"}],"termid":"MONDO:0012259","xrefs":{"Monarch":{"xref_id":"0012259"}}}


id: PBO:0086913
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative Y' element ATP-dependent helicase; YLL066C is not an essential gene","termid":"PBO:0086913"}


id: GO:0003291
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which anatomical structure of an atrial septum intermedium is generated and organized.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"atrial septum morphogenesis","termid":"GO:0060413"},{"relation_name":"part_of","term_name":"atrial septum intermedium development","termid":"GO:0003286"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"atrial septum intermedium morphogenesis","termid":"GO:0003291"}


id: MONDO:0019481
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete follicular dendritic cell sarcoma (obsolete MONDO:0019481)","termid":"MONDO:0019481","xrefs":{"Monarch":{"xref_id":"0019481"}}}


id: PR:O42634
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A meiotic recombination protein DMC1/LIM15 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01411","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic recombination protein dmc1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC8E11.03c","secondary_identifiers":["UniProtKB:O42634"],"synonyms":[{"name":"Spom972h-DMC1","type":"exact"}],"termid":"PR:O42634"}


id: MONDO:0011599
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Birdshot chorioretinopathy is a posterior uveitis characterized by multiple cream-colored, hypopigmented choroidal lesions in the fundus and a strong association with HLA-A29 and clinically presenting with blurred vision, floaters, photopsia, scotoma and nyctalopia.","definition_xrefs":["Orphanet:179"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"choroiditis","termid":"MONDO:0001280"},{"relation_name":"is_a","term_name":"posterior uveitis","termid":"MONDO:0006918"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"birdshot chorioretinopathy","secondary_identifiers":["icd11.foundation:1954035043","UMLS:C1853959","SCTID:231981005","MESH:C537630","OMIM:605808","GARD:5926","MEDGEN:340098","DOID:0111079"],"synonyms":[{"name":"BSCR","type":"exact"},{"name":"Bscr","type":"related"},{"name":"birdshot chorioretinitis","type":"exact"},{"name":"birdshot chorioretinopathy","type":"exact"},{"name":"birdshot retinochoroiditis","type":"exact"},{"name":"birdshot retinochoroidopathy","type":"exact"},{"name":"multiple small, cream-colored lesions, symmetrically scattered mainly around the optic disc","type":"related"},{"name":"multiple small, cream-colored lesions, symmetrically scattered mainly around the optic disk","type":"related"},{"name":"vitiliginous choroiditis","type":"exact"}],"termid":"MONDO:0011599","xrefs":{"Monarch":{"xref_id":"0011599"}}}


id: MONDO:0024390
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete actinomycotic infectious disease (obsolete MONDO:0024390)","termid":"MONDO:0024390","xrefs":{"Monarch":{"xref_id":"0024390"}}}


id: MONDO:0002604
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign or malignant mesenchymal neoplasm arising from the perivascular cells of the connective and soft tissues. It is characterized by the presence of pericytes that grow in a circumferential pattern around vessels.","definition_xrefs":["NCIT:C6528"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesenchymal cell neoplasm","termid":"MONDO:0002616"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pericytic neoplasm","secondary_identifiers":["UMLS:C1335392","MEDGEN:235473","DOID:3316"],"synonyms":[{"name":"Pericytic neoplasm","type":"exact"},{"name":"Pericytic tumor","type":"exact"},{"name":"Pericytic tumour","type":"exact"},{"name":"malignant perivascular cancer","type":"narrow"},{"name":"perivascular neoplasm","type":"exact"},{"name":"perivascular tumor","type":"exact"},{"name":"perivascular tumour","type":"exact"}],"termid":"MONDO:0002604","xrefs":{"Monarch":{"xref_id":"0002604"}}}


id: GO:0009127
data:
  {"annotated_genes":["SJAG_00044","SJAG_02364","SJAG_03355","SJAG_01661","SJAG_01814","SJAG_04634","SJAG_01081","SJAG_04681","SJAG_01070","SJAG_04123","SJAG_00964","SJAG_01859","SJAG_01298","SJAG_02850","SJAG_03140","SJAG_06634"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[79189,77167],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044208"},{"annotations":[77139,70337,64594,72130,57119,60173,58024,65606],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006189"},{"annotations":[57108,74315],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044209"},{"annotations":[63170,75098,59526],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006177"},{"annotations":[76012],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032263"},{"annotations":[76013,65107],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032264"},{"annotations":[76014],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032265"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of purine nucleoside monophosphate, a compound consisting of a purine base linked to a ribose or deoxyribose sugar esterified with phosphate on the sugar.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside monophosphate biosynthetic process","termid":"GO:0009124"},{"relation_name":"is_a","term_name":"purine nucleoside monophosphate metabolic process","termid":"GO:0009126"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00044":null,"SJAG_00964":null,"SJAG_01070":null,"SJAG_01081":null,"SJAG_01298":null,"SJAG_01661":null,"SJAG_01814":null,"SJAG_01859":null,"SJAG_02364":null,"SJAG_02850":null,"SJAG_03140":null,"SJAG_03355":null,"SJAG_04123":null,"SJAG_04634":null,"SJAG_04681":null,"SJAG_06634":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0055086"],"is_obsolete":false,"name":"purine nucleoside monophosphate biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000104":null,"GO_REF:0000108":null},"synonyms":[{"name":"purine nucleoside monophosphate anabolism","type":"exact"},{"name":"purine nucleoside monophosphate biosynthesis","type":"exact"},{"name":"purine nucleoside monophosphate formation","type":"exact"},{"name":"purine nucleoside monophosphate synthesis","type":"exact"}],"termid":"GO:0009127","terms_by_termid":{"GO:0006177":null,"GO:0006189":null,"GO:0032263":null,"GO:0032264":null,"GO:0032265":null,"GO:0044208":null,"GO:0044209":null}}


id: PBO:0056003
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated pseudogene 2","termid":"PBO:0056003"}


id: PBO:0116772
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TGF-beta induced TARBP2 interacting lncRNA","termid":"PBO:0116772"}


id: PBO:0005502
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carbohydrate kinase domain family protein","termid":"PBO:0005502"}


id: FYPO:0004565
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription of pheromone response genes is increased. Pheromone response genes are normally transcribed in response to a pheromone stimulus.","definition_xrefs":["PMID:15580593","PomBase:al","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased transcription during vegetative growth","termid":"FYPO:0000780"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000294","FYPO:0006551","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"increased transcription of pheromone response gene mRNA during vegetative growth","synonyms":[{"name":"increased transcription of pheromone response gene RNA during vegetative growth","type":"exact"},{"name":"increased transcription of pheromone response gene mRNA during mitotic cell cycle","type":"related"}],"termid":"FYPO:0004565"}


id: PBO:0076072
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STE20 related adaptor alpha","termid":"PBO:0076072"}


id: FYPO:0001244
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to thiamine starvation is lower than normal. Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level during vegetative growth","termid":"FYPO:0001117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0006551","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"decreased RNA level during cellular response to thiamine starvation","synonyms":[{"name":"decreased RNA accumulation during cellular response to thiamine starvation","type":"related"},{"name":"decreased RNA level during cellular response to thiamine depletion","type":"exact"},{"name":"decreased RNA level during cellular response to thiamine deprivation","type":"exact"},{"name":"decreased RNA level during cellular response to thiamine starvation during mitotic cell cycle","type":"related"},{"name":"decreased RNA level during cellular response to thiamine starvation during vegetative growth","type":"exact"},{"name":"decreased RNA level during cellular response to vitamin B1 starvation","type":"exact"},{"name":"decreased mRNA level during cellular response to thiamine starvation","type":"narrow"},{"name":"decreased transcript level during cellular response to thiamine starvation","type":"exact"},{"name":"reduced RNA level during cellular response to thiamine starvation","type":"exact"}],"termid":"FYPO:0001244"}


id: GO:2000836
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of androgen secretion.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of steroid hormone secretion","termid":"GO:2000833"},{"relation_name":"is_a","term_name":"regulation of androgen secretion","termid":"GO:2000834"},{"relation_name":"positively_regulates","term_name":"androgen secretion","termid":"GO:0035935"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0023052"],"is_obsolete":false,"name":"positive regulation of androgen secretion","termid":"GO:2000836"}


id: PBO:0065367
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PSD2 antisense RNA 1","termid":"PBO:0065367"}


id: GO:0030449
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of complement activation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of immune effector process","termid":"GO:0002697"},{"relation_name":"is_a","term_name":"regulation of humoral immune response","termid":"GO:0002920"},{"relation_name":"regulates","term_name":"complement activation","termid":"GO:0006956"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of complement activation","secondary_identifiers":["Reactome:R-HSA-977606"],"synonyms":[{"name":"regulation of complement cascade","type":"exact"}],"termid":"GO:0030449"}


id: FYPO:0005661
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which transcription occurs to a greater extent than normal when the cell is subject to nitrogen starvation. All genes, or a specific subset of genes, may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased transcription","termid":"FYPO:0002875"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000294","FYPO:0001985","FYPO:0005447","FYPO:0006551"],"is_obsolete":false,"name":"increased transcription during nitrogen starvation","synonyms":[{"name":"increased transcription during cellular response to nitrogen starvation","type":"exact"},{"name":"increased transcription during nitrogen depletion","type":"exact"},{"name":"increased transcription during nitrogen deprivation","type":"exact"},{"name":"increased transcription during nitrogen limitation","type":"exact"},{"name":"increased transcription in response to nitrogen starvation","type":"exact"},{"name":"increased transcriptional response to nitrogen starvation","type":"exact"}],"termid":"FYPO:0005661"}


id: GO:0075069
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The attachment of an infection cushion of the symbiont to its host via adhesion molecules. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adhesion of symbiont infection structure to host","termid":"GO:0075001"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"adhesion of symbiont infection cushion to host","synonyms":[{"name":"adhesion of symbiont infection cushion to host during symbiotic interaction","type":"exact"}],"termid":"GO:0075069"}


id: FYPO:0007615
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription from a promoter that contains one or more STREP motifs occurs to a greater extent than normal during a cellular response to nitric oxide.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased transcription during cellular response to nitric oxide","termid":"FYPO:0002781"},{"relation_name":"is_a","term_name":"increased transcription from STREP promoter","termid":"FYPO:0007612"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0006551","FYPO:0001320","FYPO:0000002","FYPO:0000294"],"is_obsolete":false,"name":"increased transcription from STREP promoter during cellular response to nitric oxide","synonyms":[{"name":"increased transcription from STREP promoter during cellular response to NO","type":"exact"},{"name":"increased transcription from STREP promoter during cellular response to nitric oxide during mitotic cell cycle","type":"related"},{"name":"increased transcription from STREP promoter during cellular response to nitric oxide during vegetative growth","type":"exact"}],"termid":"FYPO:0007615"}


id: PBO:0053597
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 624","termid":"PBO:0053597"}


id: GO:0035749
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The region of the myelin sheath nearest to the axon.","definition_xrefs":["GOC:BHF","PMID:20237282"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"myelin sheath","termid":"GO:0043209"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"myelin sheath adaxonal region","termid":"GO:0035749"}


id: GO:0043662
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The soluble material inside the peribacteroid membrane, but outside of the bacteroid, within a bacteroid-containing symbiosome.","definition_xrefs":["GOC:cc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"bacteroid-containing symbiosome","termid":"GO:0043660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0031410"],"is_obsolete":false,"name":"peribacteroid fluid","termid":"GO:0043662"}


id: FYPO:0007576
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which vacuole fission, i.e. the division of one vacuole into two or more separate vacuoles, is abnormal.","definition_xrefs":["PomBase:mah","GO:0140572"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal vacuole organization during vegetative growth","termid":"FYPO:0000812"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abnormal vacuole fission","synonyms":[{"name":"abnormal vacuole division","type":"exact"},{"name":"abnormal vacuole fission during mitotic cell cycle","type":"related"},{"name":"abnormal vacuole fission during vegetative growth","type":"exact"}],"termid":"FYPO:0007576"}


id: GO:0017143
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving insecticides, chemicals used to kill insects.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xenobiotic metabolic process","termid":"GO:0006805"},{"relation_name":"is_a","term_name":"toxin metabolic process","termid":"GO:0009404"},{"relation_name":"part_of","term_name":"response to insecticide","termid":"GO:0017085"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"insecticide metabolic process","secondary_identifiers":["GO:0017138"],"synonyms":[{"name":"insecticide metabolism","type":"exact"}],"termid":"GO:0017143"}


id: MONDO:1010573
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Diabetes mellitus that occurs in koala.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diabetes mellitus, non-human animal","termid":"MONDO:1010052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diabetes mellitus, koala","secondary_identifiers":["OMIA:000279-38626"],"termid":"MONDO:1010573","xrefs":{"Monarch":{"xref_id":"1010573"}}}


id: FYPO:0002457
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a vegetatively growing cell is viable, is elongated, is curved along the long axis, and contains one or more abnormal septa. In a curved cell, the long axis follows a smooth bend rather than a straight line.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viable curved elongated vegetative cell","termid":"FYPO:0002215"},{"relation_name":"is_a","term_name":"viable curved vegetative cell with abnormal septum","termid":"FYPO:0002456"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000005","FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0000004"],"is_obsolete":false,"name":"viable curved elongated vegetative cell with abnormal septum","synonyms":[{"name":"curved elongated viable cell with abnormal septum","type":"exact"},{"name":"viable curved elongated abnormally septated vegetative cell","type":"exact"},{"name":"viable curved elongated cell with abnormal septum during vegetative growth","type":"exact"},{"name":"viable curved elongated vegetative cell with abnormal septum during mitotic cell cycle","type":"related"}],"termid":"FYPO:0002457"}


id: FYPO:0006056
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the spindle pole body does not attach to the prospore membrane during prospore membrane formation and closure. Normally, the prospore membrane associates with the spindle pole body from late anaphase of meiosis II until the membrane has completely closed.","definition_xrefs":["PomBase:mah","PMID:18411246"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal prospore formation","termid":"FYPO:0000196"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0000121"},{"rel_name":"is_a","termid":"FYPO:0000121"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0000121","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"prospore formation with spindle pole body dissociated from prospore membrane","synonyms":[{"name":"forespore formation with spindle pole body dissociated from FSM","type":"exact"},{"name":"forespore formation with spindle pole body dissociated from forespore membrane","type":"exact"},{"name":"prospore formation with SPB dissociated from prospore membrane","type":"exact"},{"name":"spindle pole body separated from the FSM","type":"exact"}],"termid":"FYPO:0006056"}


id: GO:1901517
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of aspyridone A.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyketide catabolic process","termid":"GO:0030640"},{"relation_name":"is_a","term_name":"pyridine-containing compound catabolic process","termid":"GO:0072526"},{"relation_name":"is_a","term_name":"aspyridone A metabolic process","termid":"GO:1901516"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"aspyridone A catabolic process","synonyms":[{"name":"aspyridone A breakdown","type":"exact"},{"name":"aspyridone A catabolism","type":"exact"},{"name":"aspyridone A degradation","type":"exact"}],"termid":"GO:1901517"}


id: GO:1901551
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of endothelial cell development.","definition_xrefs":["GOC:pr","GOC:TermGenie","PMID:19470579"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell development","termid":"GO:0010721"},{"relation_name":"is_a","term_name":"negative regulation of endothelial cell differentiation","termid":"GO:0045602"},{"relation_name":"is_a","term_name":"regulation of endothelial cell development","termid":"GO:1901550"},{"relation_name":"negatively_regulates","term_name":"endothelial cell development","termid":"GO:0001885"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of endothelial cell development","synonyms":[{"name":"down regulation of endothelial cell development","type":"exact"},{"name":"down-regulation of endothelial cell development","type":"exact"},{"name":"downregulation of endothelial cell development","type":"exact"},{"name":"inhibition of endothelial cell development","type":"narrow"}],"termid":"GO:1901551"}


id: PR:Q9C0Z8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAPB1E7.11c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9C0Z8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein PB1E7.11c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAPB1E7.11c","synonyms":[{"name":"Spom972h-SPAPB1E7.11c","type":"exact"}],"termid":"PR:Q9C0Z8"}


id: GO:0015713
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which phosphoglycerate is transported across a lipid bilayer, from one side of a membrane to the other.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldonate transmembrane transport","termid":"GO:0042873"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"phosphoglycerate transmembrane transport","synonyms":[{"name":"phosphoglycerate transport","type":"related"}],"termid":"GO:0015713"}


id: PBO:0084226
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hsp90 chaperone; redundant in function with Hsc82p; required for pheromone signaling, negative regulation of Hsf1p; docks with Tom70p for mitochondrial preprotein delivery; promotes telomerase DNA binding, nucleotide addition; protein abundance increases in response to DNA replication stress; promotes solubility of chaperone-substrate complexes; HSP82 has a paralog, HSC82, that arose from the whole genome duplication; human homolog, HSP90AB1, complements null mutant","termid":"PBO:0084226"}


id: PBO:0043398
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chemerin chemokine-like receptor 1","termid":"PBO:0043398"}


id: PBO:0059573
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metallothionein 1X pseudogene 1","termid":"PBO:0059573"}


id: PBO:0027630
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_H3-K9_trimethylation_at_subtelomere","termid":"PBO:0027630"}


id: PBO:0077023
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioesterase superfamily member 5","termid":"PBO:0077023"}


id: MONDO:0032624
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial complex I deficiency, nuclear type","termid":"MONDO:0100223"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004069"],"is_obsolete":false,"name":"mitochondrial complex 1 deficiency, nuclear type 19","secondary_identifiers":["DOID:0112085","OMIM:618241","GARD:16326","UMLS:C4748791","MEDGEN:1648450"],"synonyms":[{"name":"MC1DN19","type":"related"},{"name":"MITOCHONDRIAL COMPLEX I DEFICIENCY, NUCLEAR TYPE 19","type":"related"}],"termid":"MONDO:0032624","xrefs":{"Monarch":{"xref_id":"0032624"}}}


id: PBO:0036230
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydrolase, pseudogene (4 frameshifts)","termid":"PBO:0036230"}


id: PBO:0058366
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4738","termid":"PBO:0058366"}


id: MONDO:1011051
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Polycystic kidney disease that occurs in springbok.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polycystic kidney disease, non-human animal","termid":"MONDO:1010262"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polycystic kidney disease, springbok","secondary_identifiers":["OMIA:000807-59523"],"termid":"MONDO:1011051","xrefs":{"Monarch":{"xref_id":"1011051"}}}


id: MONDO:0003545
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplasm that occurs within the spinal canal in the space between the spinal cord and the dura mater. Representative examples include meningioma, neurofibroma, and sarcoma. Signs and symptoms include local and radicular pain, weakness and spinal cord compression.","definition_xrefs":["NCIT:C5135"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epidural spinal canal neoplasm","termid":"MONDO:0002713"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intradural extramedullary spinal canal neoplasm","secondary_identifiers":["UMLS:C1334255","DOID:5615","MEDGEN:272771"],"synonyms":[{"name":"intradural extramedullary neoplasm of spinal canal","type":"exact"},{"name":"intradural extramedullary neoplasm of the spinal canal","type":"exact"},{"name":"intradural extramedullary spinal canal neoplasm","type":"exact"},{"name":"intradural extramedullary spinal canal tumor","type":"exact"},{"name":"intradural extramedullary spinal canal tumors","type":"exact"},{"name":"intradural extramedullary spinal canal tumour","type":"exact"},{"name":"intradural extramedullary spinal canal tumours","type":"exact"},{"name":"intradural extramedullary spinal neoplasms","type":"exact"},{"name":"intradural extramedullary spinal tumors","type":"exact"},{"name":"intradural extramedullary spinal tumours","type":"exact"},{"name":"intradural extramedullary tumor of spinal canal","type":"exact"},{"name":"intradural extramedullary tumor of the spinal canal","type":"exact"},{"name":"intradural extramedullary tumour of spinal canal","type":"exact"},{"name":"intradural extramedullary tumour of the spinal canal","type":"exact"},{"name":"spinal canal intradural extramedullary neoplasm","type":"related"}],"termid":"MONDO:0003545","xrefs":{"Monarch":{"xref_id":"0003545"}}}


id: FYECO:0000145
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Experiments were performed in medium containing maltose, salts and water. May be supplemented with a set of amino acids as per the auxotrophic requirements of the strain.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping defined medium","termid":"FYECO:0000013"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"maltose MM","synonyms":[{"name":"maltose minimal medium","type":"exact"}],"termid":"FYECO:0000145"}


id: MONDO:0024623
data:
  {"annotated_genes":["SJAG_00731","SJAG_03578","SJAG_00863","SJAG_01444"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86817],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0044720"},{"annotations":[87385],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013385"},{"annotations":[86043],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009558"},{"annotations":[85719],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030067"}]},"cv_name":"mondo","definition":"Pathological processes of the ear, the nose, and the throat, also known as the ENT diseases.","definition_xrefs":["MESH:D010038"],"direct_ancestors":[{"relation_name":"is_a","term_name":"human disease","termid":"MONDO:0700096"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00731":null,"SJAG_00863":null,"SJAG_01444":null,"SJAG_03578":null},"genotype_count":0,"is_obsolete":false,"name":"otorhinolaryngologic disease","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["SCTID:232208008","MEDGEN:583054","NANDO:1100015","UMLS:C0395797","ICD9:478.19","NCIT:C118420"],"synonyms":[{"name":"ENT disease","type":"related"},{"name":"ENT diseases","type":"related"},{"name":"disease, ENT","type":"related"},{"name":"disease, otolaryngologic","type":"related"},{"name":"disease, otolaryngological","type":"related"},{"name":"disease, otorhinolaryngologic","type":"related"},{"name":"disease, otorhinolaryngological","type":"related"},{"name":"diseases, ENT","type":"related"},{"name":"diseases, otolaryngologic","type":"related"},{"name":"diseases, otolaryngological","type":"related"},{"name":"diseases, otorhinolaryngologic","type":"related"},{"name":"diseases, otorhinolaryngological","type":"related"},{"name":"ear, nose and throat disorder","type":"exact"},{"name":"ear, nose or throat disorder","type":"exact"},{"name":"ear/nose/throat disease","type":"exact"},{"name":"otolaryngologic disease","type":"related"},{"name":"otolaryngologic diseases","type":"related"},{"name":"otolaryngologic disorder","type":"exact"},{"name":"otolaryngological disease","type":"related"},{"name":"otolaryngological diseases","type":"related"},{"name":"otorhinolaryngologic disease","type":"exact"},{"name":"otorhinolaryngological disease","type":"related"},{"name":"otorhinolaryngological diseases","type":"related"}],"termid":"MONDO:0024623","terms_by_termid":{"MONDO:0009558":null,"MONDO:0013385":null,"MONDO:0030067":null,"MONDO:0044720":null},"xrefs":{"Monarch":{"xref_id":"0024623"}}}


id: PBO:0061328
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear pore complex interacting protein family member B6","termid":"PBO:0061328"}


id: RO:0002350
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"is member of is a mereological relation between a item and a collection.","direct_ancestors":[{"relation_name":"is_a","term_name":"part_of","termid":"BFO:0000050"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"member_of","termid":"RO:0002350"}


id: GO:1902256
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of apoptotic process involved in outflow tract morphogenesis.","definition_xrefs":["GOC:TermGenie","PMID:16839542","GOC:dph","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of apoptotic process involved in morphogenesis","termid":"GO:1902337"},{"relation_name":"regulates","term_name":"apoptotic process involved in outflow tract morphogenesis","termid":"GO:0003275"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of apoptotic process involved in outflow tract morphogenesis","synonyms":[{"name":"regulation of apoptosis involved in outflow tract morphogenesis","type":"narrow"}],"termid":"GO:1902256"}


id: GO:0032754
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of interleukin-5 production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of interleukin-5 production","termid":"GO:0032674"},{"relation_name":"positively_regulates","term_name":"interleukin-5 production","termid":"GO:0032634"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of interleukin-5 production","secondary_identifiers":["GO:0045407","GO:2000664"],"synonyms":[{"name":"activation of interleukin-5 production","type":"narrow"},{"name":"positive regulation of IL-5 production","type":"exact"},{"name":"positive regulation of interleukin-5 biosynthetic process","type":"narrow"},{"name":"positive regulation of interleukin-5 secretion","type":"narrow"},{"name":"stimulation of interleukin-5 production","type":"narrow"},{"name":"up regulation of interleukin-5 production","type":"exact"},{"name":"up-regulation of interleukin-5 production","type":"exact"},{"name":"upregulation of interleukin-5 production","type":"exact"}],"termid":"GO:0032754"}


id: PBO:0090458
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U2 small nuclear RNA auxiliary factor small subunit, U2AF-59","termid":"PBO:0090458"}


id: SO:0000278
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A transcript that is bound by a nucleic acid.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"bound_by_nucleic_acid","termid":"SO:0000876"},{"relation_name":"is_a","term_name":"transcript","termid":"SO:0000673"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcript_bound_by_nucleic_acid","synonyms":[{"name":"transcript bound by nucleic acid","type":"exact"}],"termid":"SO:0000278"}


id: PBO:0017899
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidyl-N-dimethylethanolamine N-methyltransferase","termid":"PBO:0017899"}


id: MONDO:0009168
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Fowler syndrome","secondary_identifiers":["SCTID:700242002","GARD:17138","MEDGEN:384026","DOID:0111666","MESH:C565593","ICD9:596.59","MedDRA:10071718","OMIM:225790","Orphanet:221126","UMLS:C1856972"],"synonyms":[{"name":"Encephaloclastic proliferative vasculopathy","type":"exact"},{"name":"Fowler syndrome","type":"exact"},{"name":"PVHH","type":"related"},{"name":"cerebral proliferative glomeruloid vasculopathy","type":"exact"},{"name":"hydranencephaly, fowler type","type":"related"},{"name":"hydrocephaly/hydranencephaly due to cerebral vasculopathy","type":"exact"},{"name":"proliferative vasculopathy and hydranencephaly-hydrocephaly syndrome","type":"related"},{"name":"proliferative vasculopathy and hydranencephaly/hydrocephaly","type":"exact"}],"termid":"MONDO:0009168","xrefs":{"Monarch":{"xref_id":"0009168"}}}


id: MONDO:0958274
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"atrophic papulosis","termid":"MONDO:0958110"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"benign atrophic papulosis","secondary_identifiers":["MEDGEN:1864041","Orphanet:656085","UMLS:C5891170"],"termid":"MONDO:0958274","xrefs":{"Monarch":{"xref_id":"0958274"}}}


id: MONDO:0012228
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"myopia","termid":"MONDO:0001384"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"myopia 8","secondary_identifiers":["MEDGEN:332223","MESH:C563760","UMLS:C1836505","OMIM:609257"],"synonyms":[{"name":"MYP8","type":"exact"},{"name":"myopia 8","type":"exact"}],"termid":"MONDO:0012228","xrefs":{"Monarch":{"xref_id":"0012228"}}}


id: MONDO:1010142
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pyoderma that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"integumentary system disorder, non-human animal","termid":"MONDO:1011328"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyoderma, non-human animal","secondary_identifiers":["OMIA:001877"],"termid":"MONDO:1010142","xrefs":{"Monarch":{"xref_id":"1010142"}}}


id: MONDO:0035236
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare subtype of pyoderma gangrenosum characterized by multiple painful, sterile pustules with a surrounding erythematous halo, predominantly occurring on the trunk and extensor surfaces of the limbs, and potentially persisting for months. Histopathology shows a dermal neutrophilic infiltrate and subcorneal neutrophilic micropustules. The condition is commonly associated with inflammatory bowel disease.","definition_xrefs":["Orphanet:538866"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyoderma gangrenosum","termid":"MONDO:0018824"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"pustular pyoderma gangrenosum","secondary_identifiers":["GARD:22221","ICD10CM:L88","MEDGEN:1814476","UMLS:C5681317"],"termid":"MONDO:0035236","xrefs":{"Monarch":{"xref_id":"0035236"}}}


id: GO:0106200
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the translocation of amino acids and peptides linked to the hydrolysis of a nucleoside triphosphate.","definition_xrefs":["GOC:hjd"],"gene_count":0,"genotype_count":0,"name":"obsolete translocase activity acting on amio acids and peptides linked to the hydrolysis of a nucleoside triphosphate (obsolete GO:0106200)","termid":"GO:0106200"}


id: PBO:0057331
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 520f","termid":"PBO:0057331"}


id: PBO:0043909
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytokine receptor like factor 2","termid":"PBO:0043909"}


id: MONDO:0005247
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A bacterial infectious process affecting any part of the urinary tract, most commonly the bladder and the urethra. Symptoms include urinary urgency and frequency, burning sensation during urination, lower abdominal discomfort, and cloudy urine.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bacterial infectious disease","termid":"MONDO:0005113"},{"relation_name":"is_a","term_name":"urinary tract infection","termid":"MONDO:0100338"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bacterial urinary tract infection","secondary_identifiers":["MEDGEN:675826","UMLS:C0729524","SCTID:68566005","NCIT:C50791","ICD9:599.0"],"synonyms":[{"name":"UTI","type":"broad"},{"name":"bacterial urinary tract infection (disease)","type":"exact"},{"name":"infection, urinary tract","type":"broad"},{"name":"tract, infection of urinary","type":"broad"},{"name":"urinary tract infection","type":"broad"},{"name":"urinary tract infection (disease)","type":"broad"},{"name":"urinary tract infectious disease","type":"broad"}],"termid":"MONDO:0005247","xrefs":{"Monarch":{"xref_id":"0005247"}}}


id: FYPO:0001154
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of methylamine measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of substance in cell during vegetative growth","termid":"FYPO:0001330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"increased cellular methylamine level","synonyms":[{"name":"increased cellular methylamine level during mitotic cell cycle","type":"related"},{"name":"increased cellular methylamine level during vegetative growth","type":"exact"},{"name":"increased methylamine accumulation","type":"related"}],"termid":"FYPO:0001154"}


id: GO:0004283
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the preferential cleavage of Lys-Xaa > Arg-Xaa; higher selectivity than trypsin. Converts fibrin into soluble products.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete plasmin activity (obsolete GO:0004283)","synonyms":[{"name":"actase activity","type":"related"},{"name":"fibrinase activity","type":"related"},{"name":"fibrinolysin activity","type":"related"},{"name":"plasmin activity","type":"exact"},{"name":"serum tryptase activity","type":"related"},{"name":"thrombolysin","type":"related"}],"termid":"GO:0004283"}


id: PBO:0068800
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 37, pseudogene","termid":"PBO:0068800"}


id: PBO:0081791
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 721","termid":"PBO:0081791"}


id: MONDO:0014336
data:
  {"annotated_genes":["SJAG_04396"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86983],"is_not":false,"summary":null,"term":"MONDO:0014336"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"excluded_subClassOf","term_name":"autosomal dominant non-syndromic intellectual disability","termid":"MONDO:0015802"},{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04396":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"intellectual disability-facial dysmorphism syndrome due to SETD5 haploinsufficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["Orphanet:404440","GARD:17673","OMIM:615761","MEDGEN:816736","DOID:0070053","UMLS:C3810406"],"synonyms":[{"name":"MRD23","type":"exact"},{"name":"autosomal dominant intellectual disability 23","type":"exact"},{"name":"autosomal dominant mental retardation 23","type":"exact"},{"name":"autosomal dominant non-syndromic intellectual disability 23","type":"related"},{"name":"intellectual developmental disorder, autosomal dominant 23","type":"exact"},{"name":"intellectual disability, autosomal dominant 23","type":"related"},{"name":"intellectual disability, autosomal dominant type 23","type":"exact"},{"name":"intellectual disability-facial dysmorphism syndrome due to SETD5 haploinsufficiency","type":"exact"},{"name":"mental retardation, autosomal dominant 23","type":"related"},{"name":"mental retardation, autosomal dominant type 23","type":"exact"}],"termid":"MONDO:0014336","terms_by_termid":{"MONDO:0014336":null},"xrefs":{"Monarch":{"xref_id":"0014336"}}}


id: GO:0032204
data:
  {"annotated_genes":["SJAG_03624","SJAG_02194"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97539],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032215"},{"annotations":[77260],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032210"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of a process that affects and monitors the activity of telomeric proteins and the length of telomeric DNA.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of chromosome organization","termid":"GO:0033044"},{"relation_name":"is_a","term_name":"regulation of DNA metabolic process","termid":"GO:0051052"},{"relation_name":"regulates","term_name":"telomere maintenance","termid":"GO:0000723"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02194":null,"SJAG_03624":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0032200"},{"rel_name":"regulates","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006259","GO:0008150","GO:0032200"],"is_obsolete":false,"name":"regulation of telomere maintenance","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0032204","terms_by_termid":{"GO:0032210":null,"GO:0032215":null}}


id: PBO:0049671
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-hydroxyacyl-CoA dehydratase 3","termid":"PBO:0049671"}


id: PR:A6X974
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC8E11.08c gene.","definition_xrefs":["PRO:DNx","UniProtKB:A6X974"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C8E11.08c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC8E11.08c","synonyms":[{"name":"Spom972h-SPAC8E11.08c","type":"exact"}],"termid":"PR:A6X974"}


id: PBO:0084379
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Low-affinity amino acid permease; may act to supply the cell with amino acids as nitrogen source in nitrogen-poor conditions; transcription is induced under conditions of sulfur limitation; plays a role in regulating Ty1 transposition","termid":"PBO:0084379"}


id: PBO:0052488
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kelch like family member 2 pseudogene 1","termid":"PBO:0052488"}


id: PBO:0065007
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PR/SET domain 11","termid":"PBO:0065007"}


id: PATO:0001779
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A strength which is relatively low.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"strength","termid":"PATO:0001230"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased strength","synonyms":[{"name":"weak","type":"exact"}],"termid":"PATO:0001779"}


id: GO:0018202
data:
  {"annotated_genes":["SJAG_00251","SJAG_04544","SJAG_00235","SJAG_01058","SJAG_04085","SJAG_01418","SJAG_02467","SJAG_04846"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[59433,67074,78116,80623,59925,77357,79440,119171],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0017183"}]},"cv_name":"biological_process","definition":"The modification of peptidyl-histidine.","definition_xrefs":["GOC:ma"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-amino acid modification","termid":"GO:0018193"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00235":null,"SJAG_00251":null,"SJAG_01058":null,"SJAG_01418":null,"SJAG_02467":null,"SJAG_04085":null,"SJAG_04544":null,"SJAG_04846":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-histidine modification","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null},"termid":"GO:0018202","terms_by_termid":{"GO:0017183":null}}


id: PBO:0042760
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centrosomal protein 43","termid":"PBO:0042760"}


id: PBO:0048853
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucosamine (N-acetyl)-6-sulfatase","termid":"PBO:0048853"}


id: PBO:0079441
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tuftelin 1","termid":"PBO:0079441"}


id: GO:0018560
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 4-sulfocatechol + O2 = 3-sulfomuconate.","definition_xrefs":["UM-BBD_reactionID:r0581"],"gene_count":0,"genotype_count":0,"name":"obsolete protocatechuate 3,4-dioxygenase type II activity (obsolete GO:0018560)","termid":"GO:0018560"}


id: GO:0035296
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the diameter of a tube.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of tube size","termid":"GO:0035150"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of tube diameter","termid":"GO:0035296"}


id: PBO:0044599
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DDB1 and CUL4 associated factor 7","termid":"PBO:0044599"}


id: GO:0106180
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the translocation of hydrons (hydron being the general name for H+ in its natural abundance).","definition_xrefs":["GOC:hjd"],"gene_count":0,"genotype_count":0,"name":"obsolete translocase activity of hydrons (obsolete GO:0106180)","termid":"GO:0106180"}


id: MONDO:0019867
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Mosaic trisomy 8 is a chromosomal disorder defined by the presence of three copies of chromosome 8 in some cells of the organism. It is characterized by facial dysmorphism, mild intellectual deficit and joint, urinary, cardiac and skeletal anomalies.","definition_xrefs":["Orphanet:96061"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome 8, trisomy","termid":"MONDO:0043452"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mosaic trisomy 8","secondary_identifiers":["UMLS:C1096527","MESH:C537940","MedDRA:10053916","MEDGEN:797340","GARD:5359","SCTID:717335009"],"synonyms":[{"name":"Mosaic trisomy chromosome 8","type":"related"},{"name":"Mosaic trisomy type 8","type":"exact"},{"name":"Warkany syndrome","type":"exact"},{"name":"trisomy 8 mosaicism","type":"related"}],"termid":"MONDO:0019867","xrefs":{"Monarch":{"xref_id":"0019867"}}}


id: PBO:0082254
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alpha subunit of Type II geranylgeranyltransferase; required for vesicular transport between the endoplasmic reticulum and the Golgi; provides a membrane attachment moiety to Rab-like proteins Ypt1p and Sec4p","termid":"PBO:0082254"}


id: MONDO:0001891
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete malignant anus melanoma (obsolete MONDO:0001891)","termid":"MONDO:0001891","xrefs":{"Monarch":{"xref_id":"0001891"}}}


id: GO:0033102
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding an acidocalcisome.","definition_xrefs":["PMID:11378195","GOC:ecd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bounding membrane of organelle","termid":"GO:0098588"},{"relation_name":"part_of","term_name":"acidocalcisome","termid":"GO:0020022"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"acidocalcisome membrane","termid":"GO:0033102"}


id: PBO:0110466
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"a master non-coding RNA antagonizing inflammation","termid":"PBO:0110466"}


id: PBO:0090579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 snoRNP-associated protein Utp13","termid":"PBO:0090579"}


id: GO:0031132
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-serine + NADP+ = L-alpha-formylglycine + 2 H+ + NADPH.","definition_xrefs":["EC:1.1.1.276","RHEA:21596"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"serine 3-dehydrogenase activity","secondary_identifiers":["Wikipedia:Serine_3-dehydrogenase","KEGG_REACTION:R06126","MetaCyc:RXN0-2201"],"synonyms":[{"name":"L-serine:NADP+ 3-oxidoreductase activity","type":"related"}],"termid":"GO:0031132"}


id: PBO:0085478
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Probable membrane protein with three predicted transmembrane domains; similar to C. elegans F55A11.5 and maize 1-acyl-glycerol-3-phosphate acyltransferase; YDR018C has a paralog, CST26, that arose from the whole genome duplication","termid":"PBO:0085478"}


id: MONDO:0000713
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Balo concentric sclerosis (obsolete MONDO:0000713)","termid":"MONDO:0000713","xrefs":{"Monarch":{"xref_id":"0000713"}}}


id: PBO:0047911
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, BrdU type, common, fra(9)(p21)","termid":"PBO:0047911"}


id: PBO:0017056
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ars Binding Protein","termid":"PBO:0017056"}


id: PBO:0062792
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"origin recognition complex subunit 6","termid":"PBO:0062792"}


id: GO:2000549
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of dendritic cell dendrite assembly.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of plasma membrane bounded cell projection assembly","termid":"GO:0120034"},{"relation_name":"is_a","term_name":"regulation of dendritic cell dendrite assembly","termid":"GO:2000547"},{"relation_name":"positively_regulates","term_name":"dendritic cell dendrite assembly","termid":"GO:0097026"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"positive regulation of dendritic cell dendrite assembly","synonyms":[{"name":"positive regulation of dendritic extension","type":"related"}],"termid":"GO:2000549"}


id: GO:0046525
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-galactose + O-beta-D-xylosylprotein = UDP + 4-beta-D-galactosyl-O-beta-D-xylosylprotein.","definition_xrefs":["EC:2.4.1.133"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-galactosyltransferase activity","termid":"GO:0035250"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a glycoprotein","termid":"GO:0140103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0016757","GO:0003674","GO:0003824","GO:0016740","GO:0140096"],"is_obsolete":false,"name":"xylosylprotein 4-beta-galactosyltransferase activity","secondary_identifiers":["MetaCyc:2.4.1.133-RXN","Reactome:R-HSA-3560804","RHEA:15297","Reactome:R-HSA-1889981"],"synonyms":[{"name":"UDP-D-galactose:D-xylose galactosyltransferase activity","type":"related"},{"name":"UDP-D-galactose:xylose galactosyltransferase activity","type":"related"},{"name":"UDP-galactose:O-beta-D-xylosylprotein 4-beta-D-galactosyltransferase activity","type":"related"},{"name":"UDP-galactose:xylose galactosyltransferase activity","type":"exact"},{"name":"UDPgalactose:O-beta-D-xylosylprotein 4-beta-D-galactosyltransferase activity","type":"related"},{"name":"galactosyltransferase I activity","type":"related"},{"name":"uridine diphosphogalactose-xylose galactosyltransferase activity","type":"related"}],"termid":"GO:0046525"}


id: MONDO:0013290
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal agammaglobulinemia in which the cause of the disease is a mutation in the LRRC8A gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal agammaglobulinemia","termid":"MONDO:0011096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"agammaglobulinemia 5, autosomal dominant","secondary_identifiers":["MEDGEN:462103","GARD:15675","UMLS:C3150753","OMIM:613506","DOID:0080588"],"synonyms":[{"name":"AGM5","type":"related"},{"name":"LRRC8A autosomal agammaglobulinemia","type":"exact"},{"name":"agammaglobulinemia 5","type":"exact"},{"name":"agammaglobulinemia 5, autosomal dominant","type":"exact"},{"name":"agammaglobulinemia, autosomal dominant, due to Lrrc8A defect","type":"related"},{"name":"autosomal agammaglobulinemia caused by mutation in LRRC8A","type":"exact"}],"termid":"MONDO:0013290","xrefs":{"Monarch":{"xref_id":"0013290"}}}


id: PBO:0086870
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative spore wall protein; expression increases during sporulation; not an essential gene; YOR214C has a paralog, SPO19, that arose from the whole genome duplication","termid":"PBO:0086870"}


id: GO:1900057
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of leaf senescence.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of developmental process","termid":"GO:0051094"},{"relation_name":"is_a","term_name":"regulation of leaf senescence","termid":"GO:1900055"},{"relation_name":"positively_regulates","term_name":"leaf senescence","termid":"GO:0010150"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of leaf senescence","synonyms":[{"name":"activation of leaf senescence","type":"related"},{"name":"up regulation of leaf senescence","type":"related"},{"name":"up-regulation of leaf senescence","type":"related"},{"name":"upregulation of leaf senescence","type":"related"}],"termid":"GO:1900057"}


id: PBO:0080485
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"von Willebrand factor A domain containing 5A","termid":"PBO:0080485"}


id: PBO:0082386
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Beta 6 subunit of the 20S proteasome","termid":"PBO:0082386"}


id: FYPO:0006968
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of SAICAR measured in the cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cellular pentose phosphate level","termid":"FYPO:0006705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"decreased cellular SAICAR level","synonyms":[{"name":"decreased cellular SAICAR level during mitotic cell cycle","type":"related"},{"name":"decreased cellular SAICAR level during vegetative growth","type":"exact"},{"name":"reduced cellular SAICAR level","type":"exact"}],"termid":"FYPO:0006968"}


id: MONDO:0700133
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Adenoma that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neoplasm, non-human animal","termid":"MONDO:0700098"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenoma, non-human","termid":"MONDO:0700133","xrefs":{"Monarch":{"xref_id":"0700133"}}}


id: MONDO:0011418
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"excluded_subClassOf","term_name":"dyslexia","termid":"MONDO:0005489"},{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dyslexia, susceptibility to, 3","secondary_identifiers":["MEDGEN:388113","UMLS:C1858662","OMIM:604254"],"synonyms":[{"name":"DYX3","type":"exact"},{"name":"dyslexia, susceptibility to, 3","type":"exact"}],"termid":"MONDO:0011418","xrefs":{"Monarch":{"xref_id":"0011418"}}}


id: GO:0031100
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regrowth of a lost or destroyed animal organ.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regeneration","termid":"GO:0031099"},{"relation_name":"is_a","term_name":"animal organ development","termid":"GO:0048513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"animal organ regeneration","termid":"GO:0031100"}


id: GO:1905146
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any cellular protein catabolic process that takes place in a lysosome.","definition_xrefs":["GO_REF:0000062","GOC:bf","GOC:PARL","PMID:24334770","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein catabolic process in the vacuole","termid":"GO:0007039"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0030163"}],"interesting_parent_ids":["GO:0030163","GO:0008150"],"is_obsolete":false,"name":"lysosomal protein catabolic process","synonyms":[{"name":"cellular protein breakdown in lysosome","type":"exact"},{"name":"cellular protein catabolic process in lysosome","type":"exact"},{"name":"cellular protein catabolism in lysosome","type":"exact"},{"name":"cellular protein degradation in lysosome","type":"exact"},{"name":"lysosomal protein catabolism","type":"exact"},{"name":"lysosomal protein degradation","type":"exact"},{"name":"lysosomal proteolysis","type":"related"},{"name":"proteolysis within lysosome","type":"related"}],"termid":"GO:1905146"}


id: MOD:00690
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that crosslinks two residues by formation of an oxazole or thiazole ring.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"crosslinked residues","termid":"MOD:00033"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oxazole/thiazole ring crosslinked residues","termid":"MOD:00690"}


id: GO:2000998
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cellulose catabolic process.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of catabolic process","termid":"GO:0009895"},{"relation_name":"is_a","term_name":"negative regulation of macromolecule metabolic process","termid":"GO:0010605"},{"relation_name":"is_a","term_name":"negative regulation of carbohydrate metabolic process","termid":"GO:0045912"},{"relation_name":"is_a","term_name":"regulation of cellulose catabolic process","termid":"GO:2000997"},{"relation_name":"negatively_regulates","term_name":"cellulose catabolic process","termid":"GO:0030245"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"negative regulation of cellulose catabolic process","synonyms":[{"name":"negative regulation of cellulose breakdown","type":"exact"},{"name":"negative regulation of cellulose catabolism","type":"exact"},{"name":"negative regulation of cellulose degradation","type":"exact"}],"termid":"GO:2000998"}


id: PR:000085731
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A histone H3.3, initiator methionine removed form (Schizosaccharomyces pombe) that has been methylated on Lys-9 but not phosphorylated on Ser-10. UniProtKB:P10651, 2-136, Lys-10, MOD:00663|Ser-11, PR:000026291.","definition_xrefs":["PRO:DAN","PomBase:VW","PMID:19362535"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fungal histone H3.3, initiator methionine removed form (Schizosaccharomyces pombe)","termid":"PR:000027598"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hht3/Me(K9),UnPhos(S10)","pombase_gene_id":"SPBC1105.11c","synonyms":[{"name":"PRO_0000221367, Lys-10, MOD:00663|Ser-11, PR:000026291","type":"exact"},{"name":"PomBase_original_PRO_term_name: histone H3.3, initiator methionine removed K9-methylated and unphosphorylated 1 (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-hht3/InitMet-/K9MeUnPhos:1","type":"exact"},{"name":"UniProtKB:P10651, 2-136, Lys-10, MOD:00663|Ser-11, PR:000026291","type":"exact"},{"name":"hht3/Me(K9),UnPhos(S10)","type":"exact"}],"termid":"PR:000085731"}


id: FYPO:0007829
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the site of cell division begins earlier than normal.","definition_xrefs":["PMID:34133210","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to cell division site","termid":"FYPO:0001401"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000138","FYPO:0001320","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"premature protein localization to cell division site","synonyms":[{"name":"advanced protein localization to cell division site","type":"exact"},{"name":"precocious protein localization to cell division site","type":"exact"},{"name":"premature protein localisation to cell division site","type":"exact"},{"name":"premature protein localization to cell division site during mitotic cell cycle","type":"related"},{"name":"premature protein localization to cell division site during vegetative growth","type":"exact"},{"name":"premature protein recruitment to cell division site","type":"related"}],"termid":"FYPO:0007829"}


id: GO:0035804
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"The action of a molecule that contributes to the structural integrity of an egg coat. An egg coat is a specialized extracellular matrix that surrounds the ovum of animals. The egg coat provides structural support and can play an essential role in oogenesis, fertilization and early development.","definition_xrefs":["PMID:16944418","PMID:17163408"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extracellular matrix structural constituent","termid":"GO:0005201"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005198"}],"interesting_parent_ids":["GO:0005198","GO:0003674"],"is_obsolete":false,"name":"structural constituent of egg coat","synonyms":[{"name":"structural constituent of vitelline envelope","type":"narrow"},{"name":"structural constituent of zona pellucida","type":"narrow"}],"termid":"GO:0035804"}


id: MONDO:0015499
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete paralytic facial malformation (obsolete MONDO:0015499)","secondary_identifiers":["Orphanet:156224"],"termid":"MONDO:0015499","xrefs":{"Monarch":{"xref_id":"0015499"}}}


id: MONDO:0003765
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A melanoma that arises from leptomeningeal melanocytes and occurs in adulthood.","definition_xrefs":["NCIT:C5319"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leptomeningeal melanoma","termid":"MONDO:0003761"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"adult leptomeningeal melanoma","secondary_identifiers":["DOID:6090","MEDGEN:231042","UMLS:C1332204"],"synonyms":[{"name":"adult leptomeningeal melanoma","type":"exact"},{"name":"adult meningeal melanoma","type":"exact"},{"name":"melanoma of adult leptomeninges","type":"exact"},{"name":"melanoma of the adult leptomeninges","type":"related"}],"termid":"MONDO:0003765","xrefs":{"Monarch":{"xref_id":"0003765"}}}


id: PBO:0056439
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MARK2 pseudogene 12","termid":"PBO:0056439"}


id: PBO:0001096
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methylenetetrahydrofolate reductase Met11","termid":"PBO:0001096"}


id: PBO:0086136
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein required for membrane insertion of C-terminus of Cox2p; mitochondrial integral inner membrane protein; interacts genetically and physically with Mss2p and Pnt1p; similar to S. cerevisiae Oxa1, N. crassa Oxa2p, and E. coli YidC; respiratory defect of the null mutant is functionally complemented by human COX18 carrying the N-terminal 54 amino acids of S. cerevisiae Cox18p","termid":"PBO:0086136"}


id: PBO:0046878
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 8 member A3, pseudogene","termid":"PBO:0046878"}


id: PBO:0089309
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-mannosidase GH125 family Mug157","termid":"PBO:0089309"}


id: PBO:0064112
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polycystin 1 like 2 (gene/pseudogene)","termid":"PBO:0064112"}


id: MONDO:0023528
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A syndrome caused by Kaposi sarcoma-associated herpesvirus (KSHV) infection. It manifests with fever, weight loss, and fluid retention in the legs or abdomen. Patients are at risk of developing KSHV-related cancers including Kaposi sarcoma and lymphoma.","definition_xrefs":["NCIT:C125711"],"direct_ancestors":[{"relation_name":"is_a","term_name":"post-infectious syndrome","termid":"MONDO:0021670"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KSHV inflammatory cytokine syndrome","secondary_identifiers":["MEDGEN:901443","UMLS:C4086533"],"synonyms":[{"name":"KICS","type":"exact"},{"name":"KSHV inflammatory cytokine syndrome","type":"exact"},{"name":"Kaposi-sarcoma associated Herpesvirus (KSHV) inflammatory cytokine syndrome","type":"exact"}],"termid":"MONDO:0023528","xrefs":{"Monarch":{"xref_id":"0023528"}}}


id: MONDO:0003132
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rapidly progressive glomerulonephritis (obsolete MONDO:0003132)","termid":"MONDO:0003132","xrefs":{"Monarch":{"xref_id":"0003132"}}}


id: PBO:0074558
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA host gene 11","termid":"PBO:0074558"}


id: PBO:0084773
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial outer membrane protein; probable minor component of the TOM (translocase of outer membrane) complex responsible for recognition and import of mitochondrially directed proteins; TOM71 has a paralog, TOM70, that arose from the whole genome duplication","termid":"PBO:0084773"}


id: GO:0003919
data:
  {"annotated_genes":["SJAG_01937"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[78947],"is_not":false,"summary":null,"term":"GO:0003919"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + FMN = diphosphate + FAD.","definition_xrefs":["EC:2.7.7.2","RHEA:17237"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenylyltransferase activity","termid":"GO:0070566"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01937":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016779"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016779","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"FMN adenylyltransferase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:FADSYN-RXN","Reactome:R-HSA-196929","KEGG_REACTION:R00161"],"synonyms":[{"name":"ATP:FMN adenylyltransferase activity","type":"exact"},{"name":"FAD diphosphorylase activity","type":"related"},{"name":"FAD pyrophosphorylase activity","type":"related"},{"name":"FAD synthetase activity","type":"related"},{"name":"adenosine triphosphate-riboflavin mononucleotide transadenylase activity","type":"related"},{"name":"adenosine triphosphate-riboflavine mononucleotide transadenylase activity","type":"related"},{"name":"flavin adenine dinucleotide synthetase activity","type":"related"},{"name":"riboflavin adenine dinucleotide pyrophosphorylase activity","type":"related"},{"name":"riboflavin mononucleotide adenylyltransferase activity","type":"related"},{"name":"riboflavine adenine dinucleotide adenylyltransferase activity","type":"related"}],"termid":"GO:0003919","terms_by_termid":{"GO:0003919":null}}


id: GO:0015943
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of formate, also known as methanoate, the anion HCOO- derived from methanoic (formic) acid.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"formate metabolic process","termid":"GO:0015942"},{"relation_name":"is_a","term_name":"monocarboxylic acid biosynthetic process","termid":"GO:0072330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"formate biosynthetic process","synonyms":[{"name":"formate anabolism","type":"exact"},{"name":"formate biosynthesis","type":"exact"},{"name":"formate formation","type":"exact"},{"name":"formate synthesis","type":"exact"},{"name":"formic acid biosynthesis","type":"exact"},{"name":"formic acid biosynthetic process","type":"exact"}],"termid":"GO:0015943"}


id: GO:0071243
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an arsenic stimulus from compounds containing arsenic, including arsenates, arsenites, and arsenides.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to arsenic-containing substance","termid":"GO:0046685"},{"relation_name":"is_a","term_name":"cellular response to chemical stimulus","termid":"GO:0070887"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to arsenic-containing substance","synonyms":[{"name":"cellular response to arsenic","type":"exact"}],"termid":"GO:0071243"}


id: PBO:0043429
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cornichon family AMPA receptor auxiliary protein 1","termid":"PBO:0043429"}


id: PBO:0038653
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acid phosphatase 3","termid":"PBO:0038653"}


id: PBO:0068339
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 111","termid":"PBO:0068339"}


id: GO:0008293
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by an extracellular ligand binding to torso (a receptor tyrosine kinase) on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["PMID:8343949","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell surface receptor protein tyrosine kinase signaling pathway","termid":"GO:0007169"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"torso signaling pathway","synonyms":[{"name":"torso signalling pathway","type":"exact"}],"termid":"GO:0008293"}


id: GO:0036091
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.","definition_xrefs":["PMID:14978214","PMID:18439143","GOC:rn"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress (obsolete GO:0036091)","termid":"GO:0036091"}


id: GO:0048255
data:
  {"annotated_genes":["SJAG_04825","SJAG_02573","SJAG_03696","SJAG_03283","SJAG_00797","SJAG_04946"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71078,89843],"is_not":false,"summary":null,"term":"GO:0048255"},{"annotations":[79093,90547,100458,79156],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070935"}]},"cv_name":"biological_process","definition":"Prevention of degradation of mRNA molecules. In the absence of compensating changes in other processes, the slowing of mRNA degradation can result in an overall increase in the population of active mRNA molecules.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mRNA stability","termid":"GO:0043488"},{"relation_name":"is_a","term_name":"RNA stabilization","termid":"GO:0043489"},{"relation_name":"is_a","term_name":"negative regulation of mRNA catabolic process","termid":"GO:1902373"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00797":null,"SJAG_02573":null,"SJAG_03283":null,"SJAG_03696":null,"SJAG_04825":null,"SJAG_04946":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0016071"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0016071"}],"interesting_parent_ids":["GO:0010467","GO:0016071","GO:0008150"],"is_obsolete":false,"name":"mRNA stabilization","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0048255","terms_by_termid":{"GO:0048255":null,"GO:0070935":null}}


id: PR:O94566
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mug184 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94566"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 184 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1773.09c","synonyms":[{"name":"Spom972h-mug184","type":"exact"}],"termid":"PR:O94566"}


id: PBO:0004746
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human GNL3L","termid":"PBO:0004746"}


id: MONDO:0008039
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Tropical spastic paraparesis is a chronic systemic immune-mediated inflammatory myeloneuropathy, more frequently reported in women than in men, that usually presents in adulthood with slowly progressive spastic paraparesis of the lower limbs, bladder and bowel dysfunction, and sensory disturbances in the lower extremities (e.g. paresthesia and dysesthesia) and that is associated with a human T-cell lymphotropic virus type 1 (HTLV-1) infection.","definition_xrefs":["Orphanet:289326"],"direct_ancestors":[{"relation_name":"is_a","term_name":"human T-lymphotropic virus 1 infectious disease","termid":"MONDO:0005801"},{"relation_name":"is_a","term_name":"infectious disorder of the nervous system","termid":"MONDO:0020010"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tropical spastic paraparesis","secondary_identifiers":["MedDRA:10044696","MESH:D015493","DOID:321","GARD:8208","SCTID:714279000","NANDO:1200206","EFO:0007527","UMLS:C0030481","OMIM:159580","MEDGEN:18298","icd11.foundation:1043229589","ICD9:323.01"],"synonyms":[{"name":"HAM/TSP","type":"exact"},{"name":"HTLV-1 associated myelopathy/tropical spastic paraparesis","type":"related"},{"name":"HTLV-1-associated myelopathy/tropical spastic paraparesis","type":"exact"},{"name":"HTLV-associated myelopathy","type":"exact"},{"name":"Human T-cell leukaemia virus type 1 associated myelopathy/tropical spastic paraparesis","type":"related"},{"name":"Human T-cell leukemia virus type 1 associated myelopathy/tropical spastic paraparesis","type":"related"},{"name":"Human T-lymphotropic virus type I-associated myelopathy/tropical spastic paraparesis","type":"exact"},{"name":"Human T-lymphotropic virus type-1-associated myelopathy/tropical spastic paraparesis","type":"exact"},{"name":"TSP","type":"exact"},{"name":"familial spastic paraparesis, HTLV-1-associated","type":"related"},{"name":"ham","type":"related"},{"name":"ham/TSP","type":"exact"},{"name":"myelopathy, HTLV-1-associated","type":"related"},{"name":"tropical spastic paralysis","type":"exact"},{"name":"tropical spastic paraparesis (formerly)","type":"related"},{"name":"tropical spastic paraplegia","type":"exact"}],"termid":"MONDO:0008039","xrefs":{"Monarch":{"xref_id":"0008039"}}}


id: GO:0033243
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways leading to the breakdown of amines.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of catabolic process","termid":"GO:0009896"},{"relation_name":"is_a","term_name":"positive regulation of amine metabolic process","termid":"GO:0033240"},{"relation_name":"is_a","term_name":"regulation of amine catabolic process","termid":"GO:0033241"},{"relation_name":"positively_regulates","term_name":"amine catabolic process","termid":"GO:0009310"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of amine catabolic process","synonyms":[{"name":"positive regulation of amine breakdown","type":"exact"},{"name":"positive regulation of amine catabolism","type":"exact"},{"name":"positive regulation of amine degradation","type":"exact"}],"termid":"GO:0033243"}


id: PR:000027580
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A fungal histone H3.2, initiator methionine removed form in Schizosaccharomyces pombe.","definition_xrefs":["PMID:11242054","PMID:20929775","PomBase:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H3.2 (Schizosaccharomyces pombe)","termid":"PR:000027572"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H3.2, initiator methionine removed form (Schizosaccharomyces pombe)","pombase_gene_id":"SPBC8D2.04","synonyms":[{"name":"Spom-hht2/InitMet-","type":"exact"}],"termid":"PR:000027580"}


id: GO:0008752
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: FMNH2 + NAD(P)+ = FMN + NAD(P)H + H+. This reaction can utilize NADH and NADPH with similar reaction rates.","definition_xrefs":["EC:1.5.1.39"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor","termid":"GO:0016646"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"FMN reductase [NAD(P)H] activity","synonyms":[{"name":"FMN reductase activity","type":"broad"},{"name":"NAD(P)H dehydrogenase (FMN) activity","type":"exact"},{"name":"NAD(P)H-dependent FMN reductase activity","type":"related"},{"name":"flavin mononucleotide reductase activity","type":"related"}],"termid":"GO:0008752"}


id: GO:0031544
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: peptidyl L-proline + 2-oxoglutarate + O2 = peptidyl trans-3-hydroxy-L-proline + succinate + CO2.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-proline dioxygenase activity","termid":"GO:0031543"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0140096","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"peptidyl-proline 3-dioxygenase activity","secondary_identifiers":["Reactome:R-HSA-9630769"],"termid":"GO:0031544"}


id: MONDO:0032928
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T-cell lymphopenia, infantile, with or without nail dystrophy, autosomal dominant","secondary_identifiers":["Orphanet:676039","MEDGEN:1712366","UMLS:C5394133","OMIM:618806"],"synonyms":[{"name":"T-CELL LYMPHOPENIA, INFANTILE, WITH OR WITHOUT NAIL DYSTROPHY, AUTOSOMAL DOMINANT","type":"related"},{"name":"TLIND","type":"related"}],"termid":"MONDO:0032928","xrefs":{"Monarch":{"xref_id":"0032928"}}}


id: GO:1900132
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of lipid binding.","definition_xrefs":["GOC:pm","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of lipid binding (obsolete GO:1900132)","synonyms":[{"name":"activation of lipid binding","type":"narrow"},{"name":"up regulation of lipid binding","type":"exact"},{"name":"up-regulation of lipid binding","type":"exact"},{"name":"upregulation of lipid binding","type":"exact"}],"termid":"GO:1900132"}


id: PATO:0001306
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A temperature which is relatively low.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"temperature","termid":"PATO:0000146"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased temperature","secondary_identifiers":["PATO:0000677"],"synonyms":[{"name":"cold","type":"exact"},{"name":"low temperature","type":"exact"}],"termid":"PATO:0001306"}


id: PBO:0057859
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3170","termid":"PBO:0057859"}


id: PBO:0090955
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-protein ligase E3 Meu34, human RNF13 family homolog, unknown biological role","termid":"PBO:0090955"}


id: GO:0003093
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of glomerular filtration. Glomerular filtration is the process in which blood is filtered by the glomerulus into the renal tubule.","definition_xrefs":["GOC:mtg_cardio"],"direct_ancestors":[{"relation_name":"is_a","term_name":"renal system process involved in regulation of blood volume","termid":"GO:0001977"},{"relation_name":"is_a","term_name":"regulation of renal system process","termid":"GO:0098801"},{"relation_name":"regulates","term_name":"glomerular filtration","termid":"GO:0003094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of glomerular filtration","termid":"GO:0003093"}


id: PBO:0076477
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transporter 2, ATP binding cassette subfamily B member","termid":"PBO:0076477"}


id: PBO:0040675
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCAR1 scaffold protein, Cas family member","termid":"PBO:0040675"}


id: GO:0003789
data:
  {"annotated_genes":["SJAG_03025"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[92905],"is_not":false,"summary":null,"term":"GO:0003789"}]},"cv_name":"molecular_function","definition":"Binding to an actin subunit and promoting its dissociation from an actin filament by a local change in actin subunit conformation and orientation, and severing of filaments.","definition_xrefs":["PMID:23395798","PMID:11812157","PMID:23727096"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex destabilizing activity","termid":"GO:0140776"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03025":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674"],"is_obsolete":false,"name":"actin filament severing activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"actin depolymerizing activity","type":"exact"}],"termid":"GO:0003789","terms_by_termid":{"GO:0003789":null}}


id: PBO:0069310
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 566, pseudogene","termid":"PBO:0069310"}


id: PBO:0090590
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell wall alpha-amylase homolog Aah3","termid":"PBO:0090590"}


id: MONDO:0018407
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete male infertility due to obstructive azoospermia of genetic origin (obsolete MONDO:0018407)","secondary_identifiers":["Orphanet:399998"],"synonyms":[{"name":"Male infertility due to impaired sperm transport of genetic origin","type":"exact"}],"termid":"MONDO:0018407","xrefs":{"Monarch":{"xref_id":"0018407"}}}


id: PBO:0079075
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-iMet (anticodon CAT) 1-3","termid":"PBO:0079075"}


id: GO:1990298
data:
  {"annotated_genes":["SJAG_01082","SJAG_02451"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[80241,114876],"is_not":false,"summary":null,"term":"GO:1990298"}]},"cv_name":"cellular_component","definition":"Protein complex that associates with the kinetochores.","definition_xrefs":["PMID:22521786"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01082":null,"SJAG_02451":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"bub1-bub3 complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:1990298","terms_by_termid":{"GO:1990298":null}}


id: PBO:0075053
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 116-16","termid":"PBO:0075053"}


id: PBO:0082626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of commitment complex; which defines first step in splicing pathway; essential protein that interacts with Mud2p and Prp40p, forming a bridge between the intron ends; also involved in nuclear retention of pre-mRNA; relocalizes to the cytosol in response to hypoxia","termid":"PBO:0082626"}


id: FYPO:0006266
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the size of the fungal-type vacuole is normal (i.e. indistinguishable from wild type)..","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vacuolar morphology during vegetative growth","termid":"FYPO:0004247"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"normal vacuole size during vegetative growth","synonyms":[{"name":"normal vacuolar size during vegetative growth","type":"exact"},{"name":"normal vacuole size during mitotic cell cycle","type":"related"}],"termid":"FYPO:0006266"}


id: PBO:0086039
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function involved in actin patch formation; null mutant displays a decreased number of actin cortical patches, increased coat patches, altered patch formation dynamics, and defects in endocytic internalization; interacts with GID complex components and computationally predicted to be involved in fructose-1,6-bisphosphatase (Fbp1p) degradation; non-essential gene","termid":"PBO:0086039"}


id: PBO:0050899
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interferon gamma inducible protein 16","termid":"PBO:0050899"}


id: PBO:0055972
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeats and IQ motif containing 1","termid":"PBO:0055972"}


id: PBO:0003952
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TIM23 translocase complex subunit Tim44 (predicted)","termid":"PBO:0003952"}


id: GO:0014843
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of satellite cell proliferation; dependent on specific growth factor activity such as fibroblast growth factors and transforming growth factor beta.","definition_xrefs":["GOC:ef","GOC:mtg_muscle","PMID:16607119"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of skeletal muscle satellite cell proliferation","termid":"GO:0014842"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"growth factor dependent regulation of skeletal muscle satellite cell proliferation","termid":"GO:0014843"}


id: PBO:0071141
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L22 pseudogene 4","termid":"PBO:0071141"}


id: MONDO:0009232
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Fuhrmann syndrome is mainly characterized by bowing of the femora, aplasia or hypoplasia of the fibulae and poly-, oligo-, and syndactyly.","definition_xrefs":["Orphanet:2854"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dysostosis","termid":"MONDO:0018234"},{"relation_name":"is_a","term_name":"congenital limb malformation","termid":"MONDO:0019054"},{"relation_name":"is_a","term_name":"non-syndromic limb reduction defect","termid":"MONDO:0019713"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"Fuhrmann syndrome","secondary_identifiers":["GARD:2410","OMIM:228930","MESH:C538189","MEDGEN:346429","SCTID:721296004","UMLS:C1856728","DOID:0090067"],"synonyms":[{"name":"Fuhrmann syndrome","type":"exact"},{"name":"Fuhrmann-Rieger-de Sousa syndrome","type":"exact"},{"name":"bowing of the femurs, aplasia or hypoplasia of the fibula, and digital anomalies","type":"related"},{"name":"fibular aplasia or hypoplasia, femoral bowing and poly-, syn-, and oligodactyly","type":"related"},{"name":"fibular hypoplasia or aplasia-femoral bowing-oligodactyly syndrome","type":"exact"}],"termid":"MONDO:0009232","xrefs":{"Monarch":{"xref_id":"0009232"}}}


id: PBO:0055375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2804","termid":"PBO:0055375"}


id: GO:0006922
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The proteolytic degradation of lamins during apoptosis, leading to the irreversible breakdown of the nuclear lamina.","definition_xrefs":["GOC:mtg_apoptosis","ISBN:0815332181","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete cleavage of lamin involved in execution phase of apoptosis (obsolete GO:0006922)","synonyms":[{"name":"cleavage of lamin","type":"broad"},{"name":"cleavage of lamin involved in execution phase of apoptosis","type":"exact"}],"termid":"GO:0006922"}


id: PBO:0045385
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dipeptidyl peptidase 7","termid":"PBO:0045385"}


id: GO:0075011
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates, maintains or increases the frequency, rate or extent of germ tube formation on or near host. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of developmental process","termid":"GO:0051094"},{"relation_name":"is_a","term_name":"regulation of germ tube formation","termid":"GO:0075010"},{"relation_name":"positively_regulates","term_name":"germ tube formation","termid":"GO:0075009"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of germ tube formation","synonyms":[{"name":"positive regulation of germ tube formation on or near host","type":"exact"}],"termid":"GO:0075011"}


id: PBO:0045042
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dickkopf WNT signaling pathway inhibitor 2","termid":"PBO:0045042"}


id: PBO:0063876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol glycan anchor biosynthesis class F pseudogene 2","termid":"PBO:0063876"}


id: MONDO:0034146
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"disorder of glutamine metabolism","termid":"MONDO:0017352"},{"relation_name":"is_a","term_name":"autosomal recessive spastic ataxia","termid":"MONDO:0017847"},{"relation_name":"is_a","term_name":"glutaminase deficiency","termid":"MONDO:0600001"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0005066"],"is_obsolete":false,"name":"spastic ataxia-dysarthria due to glutaminase deficiency","secondary_identifiers":["Orphanet:557056","UMLS:C5681336","GARD:22247","MEDGEN:1814477"],"termid":"MONDO:0034146","xrefs":{"Monarch":{"xref_id":"0034146"}}}


id: MONDO:1011820
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"cancer or benign tumor, non-human animal","termid":"MONDO:1011305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"colorectal hamartomatous polyposis and ganglioneuromatosis, non-human animal","secondary_identifiers":["OMIA:001515"],"termid":"MONDO:1011820","xrefs":{"Monarch":{"xref_id":"1011820"}}}


id: PBO:0059568
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metallothionein 1L, pseudogene","termid":"PBO:0059568"}


id: PATO:0000791
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000791 immune function value (obsolete PATO:0000791)","termid":"PATO:0000791"}


id: PBO:0072563
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RRAS2 pseudogene 1","termid":"PBO:0072563"}


id: MONDO:0021568
data:
  {"annotated_genes":["SJAG_01896","SJAG_04260","SJAG_03375","SJAG_03371","SJAG_04978","SJAG_00516","SJAG_01183","SJAG_02977","SJAG_01370"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85855],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011422"},{"annotations":[87403],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010359"},{"annotations":[87271],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013458"},{"annotations":[85956],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0859328"},{"annotations":[87029],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013163"},{"annotations":[87583],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010645"},{"annotations":[85375],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011301"},{"annotations":[85795],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0044726"},{"annotations":[86499],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011268"},{"annotations":[87180],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0054565"}]},"cv_name":"mondo","definition":"A disease that involves the renal tubule.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kidney disorder","termid":"MONDO:0005240"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00516":null,"SJAG_01183":null,"SJAG_01370":null,"SJAG_01896":null,"SJAG_02977":null,"SJAG_03371":null,"SJAG_03375":null,"SJAG_04260":null,"SJAG_04978":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"renal tubule disorder","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C0151747","EFO:0009566","MEDGEN:57484","ICD9:588.89","SCTID:95568003"],"synonyms":[{"name":"disease of renal tubule","type":"exact"},{"name":"disease or disorder of renal tubule","type":"exact"},{"name":"disorder of renal tubule","type":"exact"},{"name":"renal tubular disease","type":"exact"},{"name":"renal tubular disorder","type":"exact"},{"name":"renal tubule disease","type":"exact"},{"name":"renal tubule disease or disorder","type":"exact"}],"termid":"MONDO:0021568","terms_by_termid":{"MONDO:0010359":null,"MONDO:0010645":null,"MONDO:0011268":null,"MONDO:0011301":null,"MONDO:0011422":null,"MONDO:0013163":null,"MONDO:0013458":null,"MONDO:0044726":null,"MONDO:0054565":null,"MONDO:0859328":null},"xrefs":{"Monarch":{"xref_id":"0021568"}}}


id: PBO:0088013
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Type II nitroreductase, using NADH as reductant; mutants are defective in fatty acid mediated repression of genes involved in fatty acid biosynthesis indicative of a role in lipid signaling; involved in the oxidative stress response; transcription induction by cadmium and selenite indicates a possible role in the metal stress response; expression induced in cells treated with the mycotoxin patulin","termid":"PBO:0088013"}


id: MONDO:0019007
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"female reproductive system disorder","termid":"MONDO:0002263"},{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vaginal atresia","secondary_identifiers":["Orphanet:65681","icd11.foundation:1126562070","GARD:18867","MedDRA:10046879","HP:0000148","MEDGEN:232948","UMLS:C1321884"],"termid":"MONDO:0019007","xrefs":{"Monarch":{"xref_id":"0019007"}}}


id: PBO:0003500
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoribosylamidoimidazolesuccinocarboxamide synthase, SAICAR synthetase, Ade7","termid":"PBO:0003500"}


id: GO:0075284
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of a multicellular or syncytial spore via septations derived from mitosis.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"asexual sporulation","termid":"GO:0030436"},{"relation_name":"is_a","term_name":"sporulation resulting in formation of a multicellular or syncytial spore","termid":"GO:0075283"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"asexual sporulation resulting in formation of a multicellular or syncytial spore","termid":"GO:0075284"}


id: GO:0110120
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which a gamma-tubulin complex is transported to, or maintained in, a specific location at the nuclear side of the mitotic spindle pole body.","definition_xrefs":["PMID:19942852","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gamma-tubulin complex localization to mitotic spindle pole body","termid":"GO:1990735"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"gamma-tubulin complex localization to nuclear side of mitotic spindle pole body","termid":"GO:0110120"}


id: MONDO:0009698
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Unverricht-Lundborg disease (ULD) is a rare progressive myoclonic epilepsy disorder characterized by action- and stimulus-sensitive myoclonus, and tonic-clonic seizures with ataxia, but with only a mild cognitive decline over time.","definition_xrefs":["Orphanet:308"],"direct_ancestors":[{"relation_name":"is_a","term_name":"movement disorder","termid":"MONDO:0005395"},{"relation_name":"is_a","term_name":"progressive myoclonus epilepsy","termid":"MONDO:0020074"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"Unverricht-Lundborg syndrome","secondary_identifiers":["SCTID:230423006","MEDGEN:155923","OMIM:254800","DOID:3535","GARD:3876","DOID:0111452","MedDRA:10054895","NANDO:1200954","MESH:D020194","NANDO:2200880","UMLS:C0751785"],"synonyms":[{"name":"Baltic myoclonic epilepsy","type":"related"},{"name":"EPM1","type":"related"},{"name":"PME type 1","type":"exact"},{"name":"ULD","type":"exact"},{"name":"Uld","type":"related"},{"name":"Unverricht - Lundborg disease","type":"exact"},{"name":"Unverricht's disease","type":"exact"},{"name":"Unverricht-Lundborg disease","type":"exact"},{"name":"Unverricht-Lundborg syndrome","type":"exact"},{"name":"epilepsy, progressive myoclonic 1A (Unverricht and Lundborg)","type":"exact"},{"name":"epilepsy, progressive myoclonic type 1","type":"related"},{"name":"epilepsy, progressive myoclonic, 1","type":"related"},{"name":"epilepsy, progressive myoclonic, 1A","type":"related"},{"name":"epilepsy, progressive myoclonus 1","type":"related"},{"name":"myoclonic epilepsy of Unverricht and Lundborg","type":"related"},{"name":"myoclonus progressive epilepsy of Unverricht and Lundborg","type":"related"},{"name":"progressive myoclonic epilepsy","type":"related"},{"name":"progressive myoclonic epilepsy type 1","type":"exact"},{"name":"progressive myoclonus epilepsy Baltic myoclonic epilepsy","type":"related"},{"name":"progressive myoclonus epilepsy type 1","type":"exact"}],"termid":"MONDO:0009698","xrefs":{"Monarch":{"xref_id":"0009698"}}}


id: PBO:0052022
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Josephin domain containing 2","termid":"PBO:0052022"}


id: MONDO:0032796
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hyper-IgE syndrome","termid":"MONDO:0018037"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"hyper-IgE recurrent infection syndrome 4, autosomal recessive","secondary_identifiers":["DOID:0080596","MEDGEN:1673363","UMLS:C5193141","OMIM:618523"],"synonyms":[{"name":"HIES4","type":"related"},{"name":"HYPER-IgE RECURRENT INFECTION SYNDROME 4, AUTOSOMAL RECESSIVE","type":"related"},{"name":"hyper-IgE recurrent infection syndrome 4B, autosomal recessive","type":"exact"}],"termid":"MONDO:0032796","xrefs":{"Monarch":{"xref_id":"0032796"}}}


id: PBO:0089086
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane copper transporter complex subunit Ctr5","termid":"PBO:0089086"}


id: GO:0007172
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form a complex capable of relaying a signal within a cell.","definition_xrefs":["GOC:bf","GOC:signaling","PMID:9646862"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of signal transduction","termid":"GO:0009966"},{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0023052","GO:0044085","GO:0065003"],"is_obsolete":false,"name":"signal complex assembly","synonyms":[{"name":"signal complex formation","type":"exact"}],"termid":"GO:0007172"}


id: PBO:0003669
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"human c15orf24 ortholog","termid":"PBO:0003669"}


id: GO:0044680
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex of two polypeptides which catalyzes the transfer of methyl group from methylthiol to coenzyme M during methanogenesis.","definition_xrefs":["PMID:11073950","GOC:mengo_curators","PMID:9371433"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase complex","termid":"GO:0034708"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"methylthiol:coenzyme M methyltransferase complex","synonyms":[{"name":"methylthiol coenzyme M methyl transferase complex","type":"exact"},{"name":"methylthiol:CoM methyltransferase complex","type":"exact"},{"name":"methylthiol:coenzyme M methyl transferase complex","type":"exact"}],"termid":"GO:0044680"}


id: MONDO:0002422
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A low grade malignant neoplasm arising from the long bones. The tibia is the most frequently affected bone site. Patients present with swelling which may or may not be associated with pain. Morphologically, it is characterized by a biphasic pattern consisting of an epithelial and an osteofibrous component. The vast majority of cases recur if they are not treated with radical surgery. In a minority of cases the tumor may metastasize to other anatomic sites including lymph nodes, lungs, liver, brain, and skeleton.","definition_xrefs":["NCIT:C7644"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete inherited syndrome with bone tumors as a major feature (obsolete MONDO:0015959)","termid":"MONDO:0015959"},{"relation_name":"is_a","term_name":"bone carcinoma","termid":"MONDO:0002415"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"adamantinoma","secondary_identifiers":["MEDGEN:83163","ICD9:170.9","SCTID:307609003","DOID:2775","ICDO:9261/3","UMLS:C0334556","DOID:2776","MESH:D050398","Orphanet:55881","OMIM:102660","MESH:C562741","ONCOTREE:ADMA","ICD10CM:C40.2","GARD:16660","icd11.foundation:2013322169"],"synonyms":[{"name":"Extragnathic adamantinoma","type":"exact"},{"name":"adamantinoma","type":"exact"},{"name":"adamantinoma of long bone","type":"related"},{"name":"adamantinoma of long bones","type":"exact"},{"name":"adamantinoma of long bones (morphologic abnormality)","type":"exact"},{"name":"adamantinoma, malignant","type":"exact"},{"name":"long bone adamantinoma","type":"exact"}],"termid":"MONDO:0002422","xrefs":{"Monarch":{"xref_id":"0002422"}}}


id: FYECO:0000114
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which cyclosporin A was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ cyclosporin A","termid":"FYECO:0000114"}


id: MONDO:0009165
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Aicardi-Goutieres syndrome in which the cause of the disease is a mutation in the TREX1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Aicardi-Goutieres syndrome","termid":"MONDO:0018866"},{"relation_name":"is_a","term_name":"TREX1-related type 1 interferonopathy","termid":"MONDO:0700256"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0005559","MONDO:0005046"],"is_obsolete":false,"name":"Aicardi-Goutieres syndrome 1","secondary_identifiers":["OMIM:225750","MEDGEN:162912","NCIT:C165501","UMLS:C0796126","GARD:15167"],"synonyms":[{"name":"AGS1","type":"related"},{"name":"Ags","type":"related"},{"name":"Aicardi-Goutieres syndrome 1","type":"exact"},{"name":"Aicardi-Goutieres syndrome 1, autosomal dominant","type":"related"},{"name":"Aicardi-Goutieres syndrome 1, dominant and recessive","type":"exact"},{"name":"Aicardi-Goutieres syndrome caused by mutation in TREX1","type":"exact"},{"name":"Aicardi-Goutieres syndrome type 1","type":"exact"},{"name":"Cree encephalitis","type":"related"},{"name":"Pseudotoxoplasmosis syndrome","type":"related"},{"name":"TREX1 Aicardi-Goutieres syndrome","type":"exact"},{"name":"encephalopathy, familial infantile, with intracranial calcification and chronic cerebrospinal fluid lymphocytosis","type":"related"}],"termid":"MONDO:0009165","xrefs":{"Monarch":{"xref_id":"0009165"}}}


id: PBO:0058882
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 10398","termid":"PBO:0058882"}


id: PBO:0031523
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_DNA-7-methylguanine_glycosylase_activity","termid":"PBO:0031523"}


id: GO:0010442
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Generation and organization of the polarized cell that is capable of turgor driven movement.","definition_xrefs":["GOC:expert_db","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell morphogenesis","termid":"GO:0000902"},{"relation_name":"is_a","term_name":"post-embryonic plant morphogenesis","termid":"GO:0090698"},{"relation_name":"part_of","term_name":"guard cell development","termid":"GO:0010441"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"guard cell morphogenesis","synonyms":[{"name":"guard cell morphogenesis during differentiation","type":"exact"}],"termid":"GO:0010442"}


id: GO:0050328
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-tetrahydroberberine + 2 O2 = berberine + 2 H2O2.","definition_xrefs":["EC:1.3.3.8","MetaCyc:TETRAHYDROBERBERINE-OXIDASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor","termid":"GO:0016634"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"tetrahydroberberine oxidase activity","secondary_identifiers":["RHEA:13489"],"synonyms":[{"name":"(S)-THB oxidase activity","type":"related"},{"name":"(S)-tetrahydroberberine:oxygen oxidoreductase activity","type":"related"},{"name":"THB oxidase activity","type":"related"}],"termid":"GO:0050328"}


id: FYPO:0000819
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which the concentration of P-factor, the mating pheromone produced by mating type plus cells, released into the growth medium is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased concentration of pheromone in growth medium","termid":"FYPO:0000817"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001155"}],"interesting_parent_ids":["FYPO:0001155","FYPO:0001985"],"is_obsolete":false,"name":"increased concentration of P-factor in growth medium","synonyms":[{"name":"increased accumulation of P-factor in growth medium","type":"related"},{"name":"increased level of P-factor in growth medium","type":"exact"},{"name":"increased release of P-factor into growth medium","type":"related"}],"termid":"FYPO:0000819"}


id: PBO:0089149
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-protein ligase E3, human RNF126 ortholog","termid":"PBO:0089149"}


id: GO:0015694
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of mercury (Hg) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transition metal ion transport","termid":"GO:0000041"},{"relation_name":"is_a","term_name":"monoatomic cation transmembrane transport","termid":"GO:0098655"},{"relation_name":"is_a","term_name":"inorganic cation transmembrane transport","termid":"GO:0098662"},{"relation_name":"part_of","term_name":"detoxification of mercury ion","termid":"GO:0050787"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0098754"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0098754","GO:0051179","GO:0055085","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"mercury ion transport","synonyms":[{"name":"mercuric ion transport","type":"narrow"},{"name":"mercury transport","type":"exact"}],"termid":"GO:0015694"}


id: PBO:0056509
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metallo-beta-lactamase domain containing 1","termid":"PBO:0056509"}


id: PBO:0058826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 8056","termid":"PBO:0058826"}


id: GO:0048315
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of producing non-motile spores, called conidia, via mitotic asexual reproduction in higher fungi. Conidia are haploid cells genetically identical to their haploid parent. They are produced by conversion of hyphal elements, or are borne on sporogenous cells on or within specialized structures termed conidiophores, and participate in dispersal of the fungus.","definition_xrefs":["ISBN:0963117211","GOC:di","PMID:2524423","PMID:9529886"],"direct_ancestors":[{"relation_name":"is_a","term_name":"asexual sporulation","termid":"GO:0030436"},{"relation_name":"part_of","term_name":"conidium development","termid":"GO:0061794"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"conidium formation","synonyms":[{"name":"conidia biosynthesis","type":"related"},{"name":"conidia formation","type":"exact"}],"termid":"GO:0048315"}


id: PBO:0064730
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A pseudogene 66","termid":"PBO:0064730"}


id: MONDO:0016932
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndrome caused by partial chromosomal duplication","termid":"MONDO:0000762"},{"relation_name":"is_a","term_name":"chromosome 11 disorder","termid":"MONDO:0700018"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"partial duplication of chromosome 11","secondary_identifiers":["GARD:20852","MEDGEN:1386777","Orphanet:262653","SCTID:726350006","UMLS:C4518499"],"synonyms":[{"name":"partial duplication of chromosome type 11","type":"exact"},{"name":"partial trisomy of chromosome 11","type":"exact"}],"termid":"MONDO:0016932","xrefs":{"Monarch":{"xref_id":"0016932"}}}


id: MONDO:0000318
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete wound botulism (obsolete MONDO:0000318)","termid":"MONDO:0000318","xrefs":{"Monarch":{"xref_id":"0000318"}}}


id: GO:0044158
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The rigid or semi-rigid envelope lying outside the host cell membrane of plant, fungal, and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. In plants it is made of cellulose and, often, lignin; in fungi it is composed largely of polysaccharides; in bacteria it is composed of peptidoglycan.","definition_xrefs":["GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell part","termid":"GO:0033643"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell wall","termid":"GO:0044158"}


id: GO:1905418
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of amoeboid sperm motility.","definition_xrefs":["GOC:krc","GOC:cilia","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of amoeboid sperm motility","termid":"GO:1905416"},{"relation_name":"is_a","term_name":"positive regulation of cell motility","termid":"GO:2000147"},{"relation_name":"is_a","term_name":"positive regulation of reproductive process","termid":"GO:2000243"},{"relation_name":"positively_regulates","term_name":"amoeboid sperm motility","termid":"GO:0097723"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of amoeboid sperm motility","synonyms":[{"name":"activation of ameboid sperm motility","type":"narrow"},{"name":"activation of ameboid sperm movement","type":"narrow"},{"name":"activation of amoeboid sperm motility","type":"narrow"},{"name":"activation of amoeboid sperm movement","type":"narrow"},{"name":"positive regulation of ameboid sperm motility","type":"exact"},{"name":"positive regulation of ameboid sperm movement","type":"exact"},{"name":"positive regulation of amoeboid sperm movement","type":"exact"},{"name":"up regulation of ameboid sperm motility","type":"exact"},{"name":"up regulation of ameboid sperm movement","type":"exact"},{"name":"up regulation of amoeboid sperm motility","type":"exact"},{"name":"up regulation of amoeboid sperm movement","type":"exact"},{"name":"up-regulation of ameboid sperm motility","type":"exact"},{"name":"up-regulation of ameboid sperm movement","type":"exact"},{"name":"up-regulation of amoeboid sperm motility","type":"exact"},{"name":"up-regulation of amoeboid sperm movement","type":"exact"},{"name":"upregulation of ameboid sperm motility","type":"exact"},{"name":"upregulation of ameboid sperm movement","type":"exact"},{"name":"upregulation of amoeboid sperm motility","type":"exact"},{"name":"upregulation of amoeboid sperm movement","type":"exact"}],"termid":"GO:1905418"}


id: MONDO:0010226
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"46,XY complete gonadal dysgenesis","termid":"MONDO:0010765"},{"relation_name":"is_a","term_name":"46,XY partial gonadal dysgenesis","termid":"MONDO:0016674"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"46,XY sex reversal 2","secondary_identifiers":["UMLS:C1848296","GARD:9159","MESH:C535601","NANDO:1200404","DOID:0111777","OMIM:300018","MEDGEN:341190"],"synonyms":[{"name":"46,XY SEX reversal 2","type":"related"},{"name":"46,XY Sex reversal type 2","type":"exact"},{"name":"46,XY Sex reversal, Dax1-related","type":"related"},{"name":"46,XY sex reversal 2","type":"exact"},{"name":"46XY sex reversal 2, dosage-sensitive","type":"exact"},{"name":"SRXY2","type":"related"},{"name":"dosage-sensitive Sex reversal","type":"related"}],"termid":"MONDO:0010226","xrefs":{"Monarch":{"xref_id":"0010226"}}}


id: PBO:0067232
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 303, pseudogene","termid":"PBO:0067232"}


id: PBO:0055917
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat containing 37 member A5, pseudogene","termid":"PBO:0055917"}


id: PBO:0003724
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4.1.2.13","termid":"PBO:0003724"}


id: GO:0019800
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The formation of a cross-link between peptide chains mediated by a chondroitin 4-sulfate glycosaminoglycan that originates from a typical O-glycosidic link to serine of one chain; the other chain is esterified, via the alpha-carbon of its C-terminal Asp, to C-6 of an internal N-acetylgalactosamine of the glycosaminoglycan chain.","definition_xrefs":["PMID:1898736","RESID:AA0219"],"gene_count":0,"genotype_count":0,"name":"obsolete peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan (obsolete GO:0019800)","synonyms":[{"name":"peptide cross-linking via chondroitin 4-sulphate glycosaminoglycan","type":"exact"}],"termid":"GO:0019800"}


id: GO:0002760
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of an antimicrobial humoral response.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of antimicrobial humoral response","termid":"GO:0002759"},{"relation_name":"is_a","term_name":"positive regulation of response to biotic stimulus","termid":"GO:0002833"},{"relation_name":"is_a","term_name":"positive regulation of humoral immune response","termid":"GO:0002922"},{"relation_name":"is_a","term_name":"positive regulation of defense response","termid":"GO:0031349"},{"relation_name":"is_a","term_name":"positive regulation of response to external stimulus","termid":"GO:0032103"},{"relation_name":"positively_regulates","term_name":"antimicrobial humoral response","termid":"GO:0019730"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of antimicrobial humoral response","synonyms":[{"name":"activation of antimicrobial humoral response","type":"narrow"},{"name":"stimulation of antimicrobial humoral response","type":"narrow"},{"name":"up regulation of antimicrobial humoral response","type":"exact"},{"name":"up-regulation of antimicrobial humoral response","type":"exact"},{"name":"upregulation of antimicrobial humoral response","type":"exact"}],"termid":"GO:0002760"}


id: GO:2001235
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of apoptotic signaling pathway.","definition_xrefs":["GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of signal transduction","termid":"GO:0009967"},{"relation_name":"is_a","term_name":"positive regulation of apoptotic process","termid":"GO:0043065"},{"relation_name":"is_a","term_name":"regulation of apoptotic signaling pathway","termid":"GO:2001233"},{"relation_name":"positively_regulates","term_name":"apoptotic signaling pathway","termid":"GO:0097190"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of apoptotic signaling pathway","synonyms":[{"name":"positive regulation of apoptotic signalling pathway","type":"exact"}],"termid":"GO:2001235"}


id: FYPO:0003181
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which generation of double-strand breaks at defined hotspots throughout the genome during meiosis I does not occur.","definition_xrefs":["GO:0042138","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal meiotic DNA double-strand break formation","termid":"FYPO:0003564"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000293","FYPO:0000002","FYPO:0000631"],"is_obsolete":false,"name":"abolished meiotic DNA double-strand break formation","synonyms":[{"name":"absent meiotic DNA double-strand break formation","type":"exact"},{"name":"meiotic DNA double-strand break formation abolished","type":"exact"}],"termid":"FYPO:0003181"}


id: PBO:0116641
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARF interacting protein 2","termid":"PBO:0116641"}


id: GO:1905002
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of membrane repolarization during atrial cardiac muscle cell action potential.","definition_xrefs":["GO_REF:0000058","GOC:BHF_miRNA","GOC:rph","GOC:TermGenie","PMID:21098446","GOC:mtg_cardiac_conduct_nov11","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of membrane repolarization during atrial cardiac muscle cell action potential","termid":"GO:1905000"},{"relation_name":"is_a","term_name":"positive regulation of membrane repolarization during cardiac muscle cell action potential","termid":"GO:1905033"},{"relation_name":"positively_regulates","term_name":"membrane repolarization during atrial cardiac muscle cell action potential","termid":"GO:0098914"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of membrane repolarization during atrial cardiac muscle cell action potential","synonyms":[{"name":"activation of atrial repolarization","type":"related"},{"name":"activation of electrocardiogram QRS complex","type":"related"},{"name":"activation of membrane repolarization during atrial cardiac muscle cell action potential","type":"narrow"},{"name":"positive regulation of atrial repolarization","type":"related"},{"name":"positive regulation of electrocardiogram QRS complex","type":"related"},{"name":"up regulation of atrial repolarization","type":"related"},{"name":"up regulation of electrocardiogram QRS complex","type":"related"},{"name":"up regulation of membrane repolarization during atrial cardiac muscle cell action potential","type":"exact"},{"name":"up-regulation of atrial repolarization","type":"related"},{"name":"up-regulation of electrocardiogram QRS complex","type":"related"},{"name":"up-regulation of membrane repolarization during atrial cardiac muscle cell action potential","type":"exact"},{"name":"upregulation of atrial repolarization","type":"related"},{"name":"upregulation of electrocardiogram QRS complex","type":"related"},{"name":"upregulation of membrane repolarization during atrial cardiac muscle cell action potential","type":"exact"}],"termid":"GO:1905002"}


id: GO:1902004
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of amyloid-beta formation.","definition_xrefs":["GOC:TermGenie","PMID:17098871","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of amide metabolic process","termid":"GO:0034250"},{"relation_name":"is_a","term_name":"regulation of amyloid-beta formation","termid":"GO:1902003"},{"relation_name":"is_a","term_name":"positive regulation of amyloid precursor protein catabolic process","termid":"GO:1902993"},{"relation_name":"positively_regulates","term_name":"amyloid-beta formation","termid":"GO:0034205"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of amyloid-beta formation","synonyms":[{"name":"activation of beta-amyloid formation","type":"narrow"},{"name":"positive regulation of beta-amyloid formation","type":"exact"},{"name":"up regulation of beta-amyloid formation","type":"exact"},{"name":"up-regulation of beta-amyloid formation","type":"exact"},{"name":"upregulation of beta-amyloid formation","type":"exact"}],"termid":"GO:1902004"}


id: GO:0070503
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving a prosthetic group that contains selenium, as in the selenium-dependent molybdenum hydroxylases. The selenium atom in the prosthetic group is required for enzymatic function but is labile to a variety of treatments.","definition_xrefs":["GOC:mah","GOC:dh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"selenium compound metabolic process","termid":"GO:0001887"},{"relation_name":"is_a","term_name":"prosthetic group metabolic process","termid":"GO:0051189"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"selenium-containing prosthetic group metabolic process","synonyms":[{"name":"selenium-containing prosthetic group metabolism","type":"exact"}],"termid":"GO:0070503"}


id: GO:2001236
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of extrinsic apoptotic signaling pathway.","definition_xrefs":["GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of apoptotic signaling pathway","termid":"GO:2001233"},{"relation_name":"regulates","term_name":"extrinsic apoptotic signaling pathway","termid":"GO:0097191"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of extrinsic apoptotic signaling pathway","synonyms":[{"name":"regulation of extrinsic apoptosis","type":"narrow"},{"name":"regulation of extrinsic apoptotic signalling pathway","type":"exact"}],"termid":"GO:2001236"}


id: PBO:0030927
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_long-chain_fatty_acid-CoA_ligase_activity","termid":"PBO:0030927"}


id: MONDO:0008408
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"spinal muscular atrophy","termid":"MONDO:0001516"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0005559"],"is_obsolete":false,"name":"scapuloperoneal spinal muscular atrophy, autosomal dominant","secondary_identifiers":["ICD9:335.19","DOID:0111552","Orphanet:431255","OMIM:181405","EFO:1001992","SCTID:230248006","UMLS:C0751335","GARD:10314","MEDGEN:148283"],"synonyms":[{"name":"SPSMA","type":"exact"},{"name":"amyotrophy, neurogenic scapuloperoneal, New England type","type":"related"},{"name":"neurogenic scapuloperoneal amyotrophy, New England type","type":"exact"},{"name":"scapuloperoneal neuronopathy","type":"exact"},{"name":"scapuloperoneal spinal muscular atrophy","type":"exact"}],"termid":"MONDO:0008408","xrefs":{"Monarch":{"xref_id":"0008408"}}}


id: PR:O59726
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- fnx2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O59726"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar membrane amino acid uptake transporter fnx2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC3E7.06c","synonyms":[{"name":"Spom972h-fnx2","type":"exact"}],"termid":"PR:O59726"}


id: PBO:0036335
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human DLP1 AND DPS1","termid":"PBO:0036335"}


id: PBO:0041777
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calpain small subunit 1","termid":"PBO:0041777"}


id: GO:0044736
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Enables the transmembrane transfer of a sodium ion by a neuronal, voltage-insensitive channel that opens when an extracellular proton has been bound by the channel complex.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete acid-sensing ion channel activity (obsolete GO:0044736)","secondary_identifiers":["Wikipedia:Acid-sensing_ion_channel"],"synonyms":[{"name":"ASIC activity","type":"exact"}],"termid":"GO:0044736"}


id: PBO:0078860
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TRPC6 pseudogene 8","termid":"PBO:0078860"}


id: GO:0075314
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of basidium development, a process that leads to the formation of a basidium, a small, specialized club-shaped structure typically bearing four basidiospores at the tips of minute projections. The basidium is unique to Basidiomycetes and distinguishes them from other kinds of fungi.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of spore-bearing organ development","termid":"GO:0075260"},{"relation_name":"regulates","term_name":"basidium development","termid":"GO:0075313"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of basidium development","termid":"GO:0075314"}


id: GO:0019265
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of glycine by the transamination of glyoxylate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycine biosynthetic process","termid":"GO:0006545"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"glycine biosynthetic process, by transamination of glyoxylate","synonyms":[{"name":"glycine anabolism, by transamination of glyoxylate","type":"exact"},{"name":"glycine formation, by transamination of glyoxylate","type":"exact"},{"name":"glycine synthesis, by transamination of glyoxylate","type":"exact"}],"termid":"GO:0019265"}


id: PBO:0061177
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear-encoded mitochondrial tRNA-Gln (TTG) 7-1","termid":"PBO:0061177"}


id: PBO:0014264
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial FUN14 family protein","termid":"PBO:0014264"}


id: PBO:0081411
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 263","termid":"PBO:0081411"}


id: PBO:0065971
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAD52 homolog, DNA repair protein","termid":"PBO:0065971"}


id: PBO:0078873
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transient receptor potential cation channel subfamily M member 7","termid":"PBO:0078873"}


id: GO:0047630
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-ADP-2-phosphoglycerate + H2O = 3-ADP-glycerate + phosphate.","definition_xrefs":["RHEA:15861"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatase activity","termid":"GO:0016791"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0016788","GO:0003824","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"ADP-phosphoglycerate phosphatase activity","secondary_identifiers":["MetaCyc:ADP-PHOSPHOGLYCERATE-PHOSPHATASE-RXN","KEGG_REACTION:R03969","EC:3.1.3.28"],"synonyms":[{"name":"3-(ADP)-2-phosphoglycerate phosphohydrolase activity","type":"related"},{"name":"ADPphosphoglycerate phosphatase activity","type":"related"},{"name":"adenosine diphosphate phosphoglycerate phosphatase activity","type":"related"}],"termid":"GO:0047630"}


id: PBO:0067050
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 70, pseudogene","termid":"PBO:0067050"}


id: PBO:0117410
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zDHHC palmitoyltransferase 5","termid":"PBO:0117410"}


id: GO:0050824
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binding to water (H2O).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete water binding (obsolete GO:0050824)","termid":"GO:0050824"}


id: GO:2000276
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of oxidative phosphorylation uncoupler activity.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of oxidative phosphorylation uncoupler activity (obsolete GO:2000276)","synonyms":[{"name":"negative regulation of mitochondrial uncoupling protein activity","type":"related"},{"name":"negative regulation of uncoupling protein activity","type":"related"}],"termid":"GO:2000276"}


id: PBO:0050394
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A/B pseudogene 1","termid":"PBO:0050394"}


id: PBO:0036486
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"the japonicus gene is about 500 amino acids longer...possibly a gene merge in japoinicus as this does not splice to adjacent gene","termid":"PBO:0036486"}


id: GO:0018254
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The adenylylation of peptidyl-tyrosine to form peptidyl-O4'-(phospho-5'-adenosine)-L-tyrosine.","definition_xrefs":["RESID:AA0203"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-tyrosine adenylylation (obsolete GO:0018254)","synonyms":[{"name":"peptidyl-tyrosine adenylation","type":"exact"}],"termid":"GO:0018254"}


id: MONDO:0000612
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant neoplasm involving the lymphatic part of lymphoid system","direct_ancestors":[{"relation_name":"is_a","term_name":"immune system cancer","termid":"MONDO:0000621"},{"relation_name":"is_a","term_name":"lymphatic system disorder","termid":"MONDO:0005833"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0005046"],"is_obsolete":false,"name":"lymphatic system cancer","secondary_identifiers":["DOID:0060073"],"synonyms":[{"name":"cancer of lymphatic part of lymphoid system","type":"exact"},{"name":"lymphatic part of lymphoid system cancer","type":"exact"},{"name":"malignant lymphatic part of lymphoid system neoplasm","type":"exact"},{"name":"malignant neoplasm of lymphatic part of lymphoid system","type":"exact"}],"termid":"MONDO:0000612","xrefs":{"Monarch":{"xref_id":"0000612"}}}


id: MOD:01297
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-proline residue to 5x(13)C labeled L-proline.","definition_xrefs":["PubMed:12716131","Unimod:772#P"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-proline residue","termid":"MOD:00915"},{"relation_name":"is_a","term_name":"5x(13)C-labeled residue","termid":"MOD:01832"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5x(13)C labeled L-proline","synonyms":[{"name":"13C(5) Silac label","type":"related"},{"name":"Label:13C(5)","type":"related"}],"termid":"MOD:01297"}


id: GO:0042742
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"defense response","termid":"GO:0006952"},{"relation_name":"is_a","term_name":"response to bacterium","termid":"GO:0009617"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"defense response to bacterium","secondary_identifiers":["GO:0042830","GO:0009816"],"synonyms":[{"name":"antibacterial peptide activity","type":"related"},{"name":"defence response to bacteria","type":"exact"},{"name":"defence response to bacterium","type":"exact"},{"name":"defense response to bacteria","type":"exact"},{"name":"defense response to bacterium, incompatible interaction","type":"narrow"},{"name":"resistance response to pathogenic bacteria","type":"narrow"},{"name":"resistance response to pathogenic bacterium","type":"narrow"}],"termid":"GO:0042742"}


id: GO:0042440
data:
  {"annotated_genes":["SJAG_00366","SJAG_02896","SJAG_02876","SJAG_03862","SJAG_04944","SJAG_01192","SJAG_01786","SJAG_04984","SJAG_00626","SJAG_00699","SJAG_03961","SJAG_04515","SJAG_01372","SJAG_00097","SJAG_04397","SJAG_01155","SJAG_04109","SJAG_03173","SJAG_01841","SJAG_05283"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[78723,80413],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006784"},{"annotations":[101454,74719,100605,114263,112262,98582,105565],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006783"},{"annotations":[106975],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042167"},{"annotations":[57244,60294,64868,80283,67811,59216,63182,63044],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0006782"},{"annotations":[71779,77161],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019354"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving pigment, any general or particular coloring matter in living organisms, e.g. melanin.","definition_xrefs":["ISBN:0198506732","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic process","termid":"GO:0008152"}],"gene_count":20,"genes_by_uniquename":{"SJAG_00097":null,"SJAG_00366":null,"SJAG_00626":null,"SJAG_00699":null,"SJAG_01155":null,"SJAG_01192":null,"SJAG_01372":null,"SJAG_01786":null,"SJAG_01841":null,"SJAG_02876":null,"SJAG_02896":null,"SJAG_03173":null,"SJAG_03862":null,"SJAG_03961":null,"SJAG_04109":null,"SJAG_04397":null,"SJAG_04515":null,"SJAG_04944":null,"SJAG_04984":null,"SJAG_05283":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pigment metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null},"synonyms":[{"name":"pigment metabolism","type":"exact"}],"termid":"GO:0042440","terms_by_termid":{"GO:0006782":null,"GO:0006783":null,"GO:0006784":null,"GO:0019354":null,"GO:0042167":null}}


id: PBO:0045504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DSP antisense RNA 1","termid":"PBO:0045504"}


id: FYPO:0000290
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle that affects DNA-dependent transcription.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription phenotype","termid":"FYPO:0004847"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000294"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000294"],"is_obsolete":false,"name":"transcription phenotype during vegetative growth","synonyms":[{"name":"transcription phenotype during mitotic cell cycle","type":"related"}],"termid":"FYPO:0000290"}


id: MONDO:0016988
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hyperinsulinism due to HNF4A deficiency is a form of diazoxide-sensitive diffuse hyperinsulinism (DHI), characterized by macrosomia, transient or persistent hyperinsulinemic hypoglycemia (HH), responsiveness to diazoxide and a propensity to develop maturity-onset diabetes of the young subtype 1 (MODY-1).","definition_xrefs":["Orphanet:263455"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diazoxide-sensitive diffuse hyperinsulinism","termid":"MONDO:0015624"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0037792","MONDO:0005066","MONDO:0004335"],"is_obsolete":false,"name":"hyperinsulinism due to HNF4A deficiency","secondary_identifiers":["GARD:20903","MEDGEN:894506","SCTID:717048002","UMLS:C4274078"],"synonyms":[{"name":"hyperinsulinemic hypoglycemia due to HNF4A deficiency","type":"exact"}],"termid":"MONDO:0016988","xrefs":{"Monarch":{"xref_id":"0016988"}}}


id: GO:0070966
data:
  {"annotated_genes":["SJAG_04283","SJAG_02601","SJAG_01936"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[74910,107547,114496],"is_not":false,"summary":null,"term":"GO:0070966"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of the transcript body of a nuclear-transcribed mRNA with stalls in translation elongation.","definition_xrefs":["GOC:jp","PMID:16554824"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear-transcribed mRNA catabolic process","termid":"GO:0000956"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01936":null,"SJAG_02601":null,"SJAG_04283":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0016071"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0016071"],"is_obsolete":false,"name":"nuclear-transcribed mRNA catabolic process, no-go decay","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"no-go decay","type":"exact"},{"name":"no-go mRNA decay","type":"exact"},{"name":"nuclear-transcribed mRNA breakdown, no-go decay","type":"exact"},{"name":"nuclear-transcribed mRNA catabolism, no-go decay","type":"exact"},{"name":"nuclear-transcribed mRNA degradation, no-go decay","type":"exact"}],"termid":"GO:0070966","terms_by_termid":{"GO:0070966":null}}


id: GO:1900759
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of D-amino-acid oxidase activity.","definition_xrefs":["GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of D-amino-acid oxidase activity (obsolete GO:1900759)","synonyms":[{"name":"activation of D-amino-acid oxidase activity","type":"narrow"},{"name":"activation of D-amino-acid:oxygen oxidoreductase (deaminating)","type":"exact"},{"name":"activation of L-amino acid:O2 oxidoreductase activity","type":"exact"},{"name":"activation of new yellow enzyme","type":"related"},{"name":"positive regulation of D-amino-acid:oxygen oxidoreductase (deaminating)","type":"exact"},{"name":"positive regulation of L-amino acid:O2 oxidoreductase activity","type":"exact"},{"name":"positive regulation of new yellow enzyme","type":"related"},{"name":"up regulation of D-amino-acid oxidase activity","type":"exact"},{"name":"up regulation of D-amino-acid:oxygen oxidoreductase (deaminating)","type":"exact"},{"name":"up regulation of L-amino acid:O2 oxidoreductase activity","type":"exact"},{"name":"up regulation of new yellow enzyme","type":"related"},{"name":"up-regulation of D-amino-acid oxidase activity","type":"exact"},{"name":"up-regulation of D-amino-acid:oxygen oxidoreductase (deaminating)","type":"exact"},{"name":"up-regulation of L-amino acid:O2 oxidoreductase activity","type":"exact"},{"name":"up-regulation of new yellow enzyme","type":"related"},{"name":"upregulation of D-amino-acid oxidase activity","type":"exact"},{"name":"upregulation of D-amino-acid:oxygen oxidoreductase (deaminating)","type":"exact"},{"name":"upregulation of L-amino acid:O2 oxidoreductase activity","type":"exact"},{"name":"upregulation of new yellow enzyme","type":"related"}],"termid":"GO:1900759"}


id: PBO:0003699
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor TFIIA complex large subunit Toa1 (predicted)","termid":"PBO:0003699"}


id: GO:0090521
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of a podocyte from one site to another, often during the development of a multicellular organism or multicellular structure. A podocyte is a specialized kidney epithelial cell.","definition_xrefs":["GOC:pm","PMID:21402783"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell migration","termid":"GO:0010631"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"podocyte cell migration","synonyms":[{"name":"glomerular visceral epithelial cell migration","type":"exact"}],"termid":"GO:0090521"}


id: PBO:0027919
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_papuamide_B_during_vegetative_growth","termid":"PBO:0027919"}


id: MONDO:1011969
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"musculoskeletal system disorder, non-human animal","termid":"MONDO:1011335"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dahlem dwarfism, non-human animal","secondary_identifiers":["OMIA:001998"],"termid":"MONDO:1011969","xrefs":{"Monarch":{"xref_id":"1011969"}}}


id: SO:1000118
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000118 sequence_variant_causing_loss_of_function_of_polypeptide (obsolete SO:1000118)","synonyms":[{"name":"loss of function of polypeptide","type":"related"},{"name":"mutation causing loss of function of polypeptide","type":"related"},{"name":"sequence variant causing loss of function of polypeptide","type":"exact"}],"termid":"SO:1000118"}


id: PBO:0039008
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ALF transcription elongation factor 3","termid":"PBO:0039008"}


id: GO:0035793
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of metanephric mesenchymal cell migration resulting from the platelet-derived growth factor receptor-beta signaling pathway.","definition_xrefs":["GOC:bf","GOC:yaf","GOC:mtg_kidney_jan10","PMID:10734101"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway","termid":"GO:1900238"},{"relation_name":"is_a","term_name":"positive regulation of metanephric mesenchymal cell migration","termid":"GO:2000591"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway","synonyms":[{"name":"positive regulation of metanephric mesenchymal cell migration by PDGF receptor-beta signaling pathway","type":"exact"},{"name":"positive regulation of metanephric mesenchymal cell migration by PDGFR-beta signaling pathway","type":"exact"},{"name":"positive regulation of metanephric mesenchymal cell migration by betaPDGF receptor signaling pathway","type":"exact"},{"name":"positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signalling pathway","type":"exact"}],"termid":"GO:0035793"}


id: PBO:0026797
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_proteasome_regulatory_particle_binding","termid":"PBO:0026797"}


id: FYPO:0009063
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to X-rays.","direct_ancestors":[{"relation_name":"is_a","term_name":"sensitive to ionizing radiation during vegetative growth","termid":"FYPO:0000267"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000003","FYPO:0001985","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to X-rays during vegetative growth","synonyms":[{"name":"decreased vegetative cell population growth during cellular response to X rays","type":"exact"},{"name":"decreased vegetative cell population growth during cellular response to X-rays","type":"exact"},{"name":"sensitive to X rays during vegetative growth","type":"exact"}],"termid":"FYPO:0009063"}


id: GO:0060459
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The biological process whose specific outcome is the progression of a left lung from an initial condition to its mature state. This process begins with the formation of the left lung and ends with the mature structure. The left lung is the lung which is on the left side of the anterior posterior axis looking from a dorsal to ventral aspect.","definition_xrefs":["GOC:dph","GOC:mtg_lung"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lung development","termid":"GO:0030324"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"left lung development","synonyms":[{"name":"left pulmonary development","type":"exact"}],"termid":"GO:0060459"}


id: PR:O42852
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sec20 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O42852"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein transport protein sec20 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23A1.15c","synonyms":[{"name":"Spom972h-sec20","type":"exact"}],"termid":"PR:O42852"}


id: GO:0019467
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of ornithine by decarboxylation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ornithine catabolic process","termid":"GO:0006593"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"ornithine catabolic process, by decarboxylation","secondary_identifiers":["MetaCyc:ORNDEG-PWY"],"synonyms":[{"name":"ornithine breakdown, by decarboxylation","type":"exact"},{"name":"ornithine degradation, by decarboxylation","type":"exact"}],"termid":"GO:0019467"}


id: GO:0039617
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=3 symmetry. The T=3 capsid is composed of 12 pentameric and 20 hexameric capsomeres.","definition_xrefs":["VZ:806"],"direct_ancestors":[{"relation_name":"is_a","term_name":"icosahedral viral capsid","termid":"GO:0019030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"T=3 icosahedral viral capsid","termid":"GO:0039617"}


id: GO:0031455
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving glycine betaine, N-trimethylglycine.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino-acid betaine metabolic process","termid":"GO:0006577"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"glycine betaine metabolic process","synonyms":[{"name":"N-trimethylglycine metabolic process","type":"exact"},{"name":"N-trimethylglycine metabolism","type":"exact"},{"name":"glycine betaine metabolism","type":"exact"}],"termid":"GO:0031455"}


id: GO:0033363
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a secretory granule. A secretory granule is a small subcellular vesicle, surrounded by a membrane, that is formed from the Golgi apparatus and contains a highly concentrated protein destined for secretion.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle organization","termid":"GO:0016050"},{"relation_name":"part_of","term_name":"endomembrane system organization","termid":"GO:0010256"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"secretory granule organization","synonyms":[{"name":"secretory granule organisation","type":"exact"},{"name":"secretory granule organization and biogenesis","type":"related"}],"termid":"GO:0033363"}


id: PBO:0051445
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin lambda variable 3-31 (pseudogene)","termid":"PBO:0051445"}


id: MONDO:0013051
data:
  {"annotated_genes":["SJAG_00120"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85528],"is_not":false,"summary":null,"term":"MONDO:0013051"}]},"cv_name":"mondo","definition":"Autosomal recessive cutis laxa type 2B is a rare, hereditary, developmental defect with connective tissue involvement characterized by cutis laxa of variable severity, in utero growth restriction, congenital hip dislocation and joint hyperlaxity, wrinkling of the skin, in particular the dorsum of hands and feet, and progeroid facial features. Hypotonia, developmental delay, and intellectual disability are common. In addition, cataracts, corneal clouding, wormian bones, lipodystrophy and osteopenia have been reported.","definition_xrefs":["Orphanet:357064"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive cutis laxa type 2","termid":"MONDO:0019573"},{"relation_name":"is_a","term_name":"osteogenesis imperfecta and a reduction of bone mineral density.","termid":"MONDO:0800064"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00120":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0005066","MONDO:0004736","MONDO:0005497"],"is_obsolete":false,"name":"autosomal recessive cutis laxa type 2B","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:1641","OMIM:612940","MEDGEN:414526","DOID:0070137","UMLS:C2751987","MESH:C567855"],"synonyms":[{"name":"ARCL2, progeroid type","type":"exact"},{"name":"ARCL2B","type":"exact"},{"name":"PYCR1 autosomal recessive cutis laxa type 2","type":"exact"},{"name":"autosomal recessive cutis laxa type 2 caused by mutation in PYCR1","type":"exact"},{"name":"autosomal recessive cutis laxa type 2, progeroid type","type":"exact"},{"name":"autosomal recessive cutis laxa type 2B","type":"exact"},{"name":"autosomal recessive cutis laxa type IIB","type":"related"},{"name":"cutis laxa with progeroid features","type":"related"},{"name":"cutis laxa, autosomal recessive type 2B","type":"related"},{"name":"cutis laxa, autosomal recessive, type 2B","type":"related"},{"name":"cutis laxa, autosomal recessive, type IIB","type":"related"}],"termid":"MONDO:0013051","terms_by_termid":{"MONDO:0013051":null},"xrefs":{"Monarch":{"xref_id":"0013051"}}}


id: GO:0106301
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of an NADPH- and oxygen-dependent reaction that converts arachidonic acid to cis-5,6-epoxyeicosatrienoic acid.","definition_xrefs":["PMID:10491410","PMID:8631948","RHEA:49936"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arachidonate epoxygenase activity","termid":"GO:0008392"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"arachidonate 5,6-epoxygenase activity","synonyms":[{"name":"arachidonic acid 5,6-epoxygenase activity","type":"exact"}],"termid":"GO:0106301"}


id: GO:0016769
data:
  {"annotated_genes":["SJAG_04988","SJAG_03672","SJAG_01019","SJAG_02408","SJAG_02791","SJAG_03312","SJAG_04728","SJAG_03292","SJAG_03055","SJAG_04149","SJAG_00714","SJAG_00495","SJAG_00673","SJAG_04678","SJAG_03434","SJAG_03961","SJAG_04145","SJAG_03306"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[77036,72922,99743],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0047536"},{"annotations":[73291],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046820"},{"annotations":[57130],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034386"},{"annotations":[76734],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004015"},{"annotations":[78697],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004360"},{"annotations":[75735,87788],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003923"},{"annotations":[57899],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004400"},{"annotations":[74093],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016212"},{"annotations":[111623],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004021"},{"annotations":[78122,71320],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004069"},{"annotations":[110822],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052656"},{"annotations":[110823],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052654"},{"annotations":[98705],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004838"},{"annotations":[110824],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052655"},{"annotations":[62541],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003992"},{"annotations":[80054],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004648"},{"annotations":[78658],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004587"},{"annotations":[96137],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008483"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of a nitrogenous group from one compound (donor) to another (acceptor).","definition_xrefs":["GOC:jl","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity","termid":"GO:0016740"}],"gene_count":18,"genes_by_uniquename":{"SJAG_00495":null,"SJAG_00673":null,"SJAG_00714":null,"SJAG_01019":null,"SJAG_02408":null,"SJAG_02791":null,"SJAG_03055":null,"SJAG_03292":null,"SJAG_03306":null,"SJAG_03312":null,"SJAG_03434":null,"SJAG_03672":null,"SJAG_03961":null,"SJAG_04145":null,"SJAG_04149":null,"SJAG_04678":null,"SJAG_04728":null,"SJAG_04988":null},"genotype_count":0,"in_subsets":["mf_goslim_japonicus"],"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"transferase activity, transferring nitrogenous groups","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000003":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["EC:2.6.-.-"],"synonyms":[{"name":"transferase activity, transferring other nitrogenous groups","type":"narrow"}],"termid":"GO:0016769","terms_by_termid":{"GO:0003923":null,"GO:0003992":null,"GO:0004015":null,"GO:0004021":null,"GO:0004069":null,"GO:0004360":null,"GO:0004400":null,"GO:0004587":null,"GO:0004648":null,"GO:0004838":null,"GO:0008483":null,"GO:0016212":null,"GO:0034386":null,"GO:0046820":null,"GO:0047536":null,"GO:0052654":null,"GO:0052655":null,"GO:0052656":null}}


id: PBO:0065303
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine protease 16","termid":"PBO:0065303"}


id: PR:Q9UTL1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cog1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UTL1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved oligomeric Golgi complex subunit 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC144.15c","synonyms":[{"name":"COG complex subunit 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-cog1","type":"exact"}],"termid":"PR:Q9UTL1"}


id: MONDO:0008097
data:
  {"annotated_genes":["SJAG_03453"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86245],"is_not":false,"summary":null,"term":"MONDO:0008097"}]},"cv_name":"mondo","definition":"Linear nevus sebaceous syndrome (LNSS) is characterized by the association of a large sebaceous nevus, usually appearing on the face or on the scalp, with a broad spectrum of abnormalities that may affect every organ system, including the central nervous system (brain neoplasms, hemimegalencephaly and lateral ventricle enlargement).","definition_xrefs":["Orphanet:2612"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hamartoma","termid":"MONDO:0006499"},{"relation_name":"is_a","term_name":"developmental defect during embryogenesis","termid":"MONDO:0019755"},{"relation_name":"is_a","term_name":"palpebral nevus","termid":"MONDO:0020179"},{"relation_name":"is_a","term_name":"hereditary skin disorder","termid":"MONDO:0100118"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03453":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0005093"],"is_obsolete":false,"name":"linear nevus sebaceous syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:10291","MEDGEN:1646345","NCIT:C4678","DOID:0111530","OMIM:163200","UMLS:C4552097"],"synonyms":[{"name":"Epidermal Nevus syndrome, formerly","type":"related"},{"name":"JNP","type":"related"},{"name":"Jadassohn Nevus phakomatosis","type":"related"},{"name":"Jadassohn nevus phakomatosis","type":"related"},{"name":"Nevus Sebaceus Syndrome","type":"exact"},{"name":"Nevus sebaceous of Jadassohn","type":"exact"},{"name":"Nevus sebaceus of Jadassohn","type":"exact"},{"name":"Nevus sebaceus syndrome","type":"exact"},{"name":"SCHIMMELPENNING-FEUERSTEIN-MIMS syndrome","type":"related"},{"name":"SFM","type":"related"},{"name":"SFM syndrome","type":"related"},{"name":"Schimmelpenning Feuerstein Mims syndrome","type":"related"},{"name":"Schimmelpenning syndrome","type":"exact"},{"name":"Schimmelpenning-Feuerstein-Mims syndrome, somatic mosaic","type":"exact"},{"name":"Sfm syndrome","type":"related"},{"name":"Solomon syndrome","type":"exact"},{"name":"epidermal nevus syndrome","type":"related"},{"name":"linear sebaceous Nevus","type":"exact"},{"name":"linear sebaceous Nevus syndrome","type":"related"},{"name":"organoid Nevus","type":"exact"},{"name":"organoid Nevus phakomatosis","type":"related"},{"name":"organoid nevus phakomatosis","type":"related"},{"name":"organoid nevus syndrome","type":"exact"},{"name":"sebaceous Nevus syndrome, linear","type":"related"},{"name":"sebaceous nevus syndrome linear","type":"related"}],"termid":"MONDO:0008097","terms_by_termid":{"MONDO:0008097":null},"xrefs":{"Monarch":{"xref_id":"0008097"}}}


id: PBO:0050478
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homeobox A6","termid":"PBO:0050478"}


id: PBO:0031071
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_stress_during_vegetative_growth","termid":"PBO:0031071"}


id: PBO:0065139
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRKX pseudogene 2","termid":"PBO:0065139"}


id: MONDO:0004703
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Also known as carcinoma in situ of the urinary bladder or high grade intraurothelial neoplasia, this is a flat lesion of the transitional cell epithelium characterized by severe cytologic atypia. This lesion is confined to the urothelium, and is a precursor of invasive transitional cell carcinoma of the bladder. Stage 0is includes: Tis, N0, M0. Tis: Carcinoma in situ: \\\"flat tumor\\\". N0: No regional lymph node metastasis. M0: No distant metastasis. (AJCC 6th and 7th eds.)","definition_xrefs":["NCIT:C3644"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-invasive bladder urothelial carcinoma","termid":"MONDO:0003930"},{"relation_name":"is_a","term_name":"in situ carcinoma","termid":"MONDO:0004647"},{"relation_name":"is_a","term_name":"bladder flat intraepithelial lesion","termid":"MONDO:0006111"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"bladder carcinoma in situ","secondary_identifiers":["SCTID:92546004","MEDGEN:57584","ICD10CM:D09.0","UMLS:C0154091","DOID:9053","ICD9:233.7"],"synonyms":[{"name":"bladder Ca in situ","type":"exact"},{"name":"bladder flat CIS","type":"exact"},{"name":"bladder flat carcinoma in situ","type":"exact"},{"name":"cancer in situ of urinary bladder","type":"broad"},{"name":"carcinoma in situ of bladder","type":"exact"},{"name":"carcinoma in situ of the urinary bladder","type":"exact"},{"name":"carcinoma in situ of urinary bladder","type":"exact"},{"name":"flat CIS of the bladder","type":"exact"},{"name":"flat CIS of the urinary bladder","type":"exact"},{"name":"flat carcinoma in situ of the bladder","type":"exact"},{"name":"flat carcinoma in situ of the urinary bladder","type":"exact"},{"name":"high grade bladder Intraurothelial neoplasia","type":"exact"},{"name":"stage 0 urinary bladder carcinoma","type":"exact"},{"name":"stage 0is bladder cancer","type":"exact"},{"name":"stage 0is bladder carcinoma","type":"exact"},{"name":"stage 0is bladder urothelial cancer","type":"exact"},{"name":"stage 0is bladder urothelial carcinoma","type":"exact"},{"name":"stage 0is bladder urothelial carcinoma aJCC v6","type":"exact"},{"name":"stage 0is bladder urothelial carcinoma aJCC v6 and v7","type":"exact"},{"name":"stage 0is bladder urothelial carcinoma aJCC v7","type":"exact"},{"name":"stage 0is carcinoma of bladder","type":"exact"},{"name":"stage 0is carcinoma of the bladder","type":"exact"},{"name":"stage 0is carcinoma of the urinary bladder","type":"exact"},{"name":"stage 0is carcinoma of urinary bladder","type":"exact"},{"name":"stage 0is urinary bladder carcinoma","type":"exact"},{"name":"urinary bladder carcinoma in situ","type":"exact"},{"name":"urinary bladder flat CIS","type":"exact"},{"name":"urinary bladder flat carcinoma in situ","type":"exact"},{"name":"urinary bladder in situ carcinoma","type":"exact"}],"termid":"MONDO:0004703","xrefs":{"Monarch":{"xref_id":"0004703"}}}


id: PBO:0043514
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CNTNAP3 pseudogene 9","termid":"PBO:0043514"}


id: PBO:0066332
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RCC1 and BTB domain containing protein 1","termid":"PBO:0066332"}


id: PBO:0091767
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mating type M-specific HMG-box DNA-binding transcription factor Mc at silenced MAT3 locus","termid":"PBO:0091767"}


id: PBO:0016062
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amidohydrolase (predicted)","termid":"PBO:0016062"}


id: MONDO:0020068
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"infectious encephalitis","termid":"MONDO:0020067"},{"relation_name":"is_a","term_name":"post-infectious disorder","termid":"MONDO:0021669"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"postinfectious encephalitis","secondary_identifiers":["MEDGEN:581376","MedDRA:10057235","Orphanet:98253","UMLS:C0393459","SCTID:192727001","ICD9:323.6","DOID:10993"],"termid":"MONDO:0020068","xrefs":{"Monarch":{"xref_id":"0020068"}}}


id: PBO:0031688
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_peroxisomal_transport","termid":"PBO:0031688"}


id: GO:0098819
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that depolarizes a postsynaptic membrane relative to its resting potential. This has an excitatory effect on the post-synaptic cell, moving the membrane potential towards the firing threshold.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of postsynaptic membrane potential","termid":"GO:0060078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"depolarization of postsynaptic membrane","termid":"GO:0098819"}


id: PBO:0056489
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MYC associated factor X","termid":"PBO:0056489"}


id: PBO:0048706
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycine receptor alpha 3","termid":"PBO:0048706"}


id: GO:0060385
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The neurite development process that generates a long process of a neuron, as it invades a target tissue.","definition_xrefs":["GOC:dph","GOC:sart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"axonogenesis","termid":"GO:0007409"},{"relation_name":"part_of","term_name":"innervation","termid":"GO:0060384"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"axonogenesis involved in innervation","termid":"GO:0060385"}


id: MONDO:0800177
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An injury to the skin and/or its underlying tissues that results from exposure of the affected area to extreme cold.","definition_xrefs":["NCIT:C34627"],"direct_ancestors":[{"relation_name":"is_a","term_name":"injury","termid":"MONDO:0021178"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"frostbite","secondary_identifiers":["SCTID:370977006","icd11.foundation:152692065"],"termid":"MONDO:0800177","xrefs":{"Monarch":{"xref_id":"0800177"}}}


id: PBO:0081046
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger CCHC-type containing 2","termid":"PBO:0081046"}


id: GO:0010838
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of keratinocyte proliferation. Keratinocyte proliferation is the multiplication or reproduction of keratinocytes, resulting in the expansion of a cell population.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of keratinocyte proliferation","termid":"GO:0010837"},{"relation_name":"is_a","term_name":"positive regulation of epithelial cell proliferation","termid":"GO:0050679"},{"relation_name":"positively_regulates","term_name":"keratinocyte proliferation","termid":"GO:0043616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of keratinocyte proliferation","termid":"GO:0010838"}


id: PBO:0049709
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyaluronan synthase 3","termid":"PBO:0049709"}


id: PBO:0050036
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major histocompatibility complex, class II, DR beta 4","termid":"PBO:0050036"}


id: GO:0002146
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a steroid hormone receptor into the nucleus.","definition_xrefs":["GOC:hjd"],"gene_count":0,"genotype_count":0,"name":"obsolete steroid hormone receptor import into nucleus (obsolete GO:0002146)","synonyms":[{"name":"steroid hormone receptor nuclear translocation","type":"narrow"}],"termid":"GO:0002146"}


id: PBO:0060109
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND6 pseudogene 10","termid":"PBO:0060109"}


id: GO:0160183
data:
  {"annotated_genes":["SJAG_00079","SJAG_03435","SJAG_01073","SJAG_04991"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[99760],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140506"},{"annotations":[90327,60779,114926],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140580"}]},"cv_name":"molecular_function","definition":"The binding activity of a molecule that brings together a target membrane and an autophagosome during autophagy.","definition_xrefs":["PMID:36635405","PMID:30544615"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane-membrane adaptor activity","termid":"GO:0043495"},{"relation_name":"is_a","term_name":"autophagy cargo adaptor activity","termid":"GO:0160247"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00079":null,"SJAG_01073":null,"SJAG_03435":null,"SJAG_04991":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0030674"}],"interesting_parent_ids":["GO:0060090","GO:0003674","GO:0030674"],"is_obsolete":false,"name":"autophagosome-membrane adaptor activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null},"termid":"GO:0160183","terms_by_termid":{"GO:0140506":null,"GO:0140580":null}}


id: GO:0090233
data:
  {"annotated_genes":["SJAG_03126","SJAG_01679","SJAG_00883","SJAG_02336","SJAG_02451","SJAG_03353","SJAG_04259","SJAG_03681","SJAG_02169","SJAG_01297"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[112349,99950,114170,114658,108633,104256,91080,116290,107603],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902426"},{"annotations":[94561],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140499"}]},"cv_name":"biological_process","definition":"Any process that decreases the rate, frequency, or extent of the spindle checkpoint, a cell cycle checkpoint that delays the metaphase/anaphase transition until the spindle is correctly assembled and oriented, and chromosomes are attached to the spindle.","definition_xrefs":["GOC:ascb_2009","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of spindle checkpoint","termid":"GO:0090231"},{"relation_name":"is_a","term_name":"negative regulation of cell cycle checkpoint","termid":"GO:1901977"},{"relation_name":"negatively_regulates","term_name":"spindle checkpoint signaling","termid":"GO:0031577"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00883":null,"SJAG_01297":null,"SJAG_01679":null,"SJAG_02169":null,"SJAG_02336":null,"SJAG_02451":null,"SJAG_03126":null,"SJAG_03353":null,"SJAG_03681":null,"SJAG_04259":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0007049","GO:0023052"],"is_obsolete":false,"name":"negative regulation of spindle checkpoint","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"spindle checkpoint silencing","type":"narrow"}],"termid":"GO:0090233","terms_by_termid":{"GO:0140499":null,"GO:1902426":null}}


id: GO:0010096
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a floral organ primordium acquires sepal identity. Identity is considered to be the aggregate of characteristics by which a structure is recognized.","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"specification of floral organ identity","termid":"GO:0010093"},{"relation_name":"part_of","term_name":"sepal formation","termid":"GO:0048453"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"specification of sepal identity","termid":"GO:0010096"}


id: MONDO:0009686
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"musk, inability to smell","secondary_identifiers":["UMLS:C1850807","MEDGEN:342594","OMIM:254150","MESH:C564980"],"synonyms":[{"name":"musk, inability to smell","type":"exact"}],"termid":"MONDO:0009686","xrefs":{"Monarch":{"xref_id":"0009686"}}}


id: GO:0071810
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate or extent of fever generation via regulation of the frequency, rate or extent of the regulated release of a prostaglandin from a cell.","definition_xrefs":["GOC:dph","GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of fever generation","termid":"GO:0031620"},{"relation_name":"is_a","term_name":"regulation of prostaglandin secretion","termid":"GO:0032306"},{"relation_name":"regulates","term_name":"regulation of fever generation by prostaglandin secretion","termid":"GO:0100009"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of fever generation by regulation of prostaglandin secretion","termid":"GO:0071810"}


id: PBO:0030392
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-monoseptate","termid":"PBO:0030392"}


id: PBO:0029596
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_localization_to_plasma_membrane_during_vegetative_growth","termid":"PBO:0029596"}


id: GO:0051352
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops or reduces the rate of ligase activity, the catalysis of the ligation of two substances with concomitant breaking of a diphosphate linkage, usually in a nucleoside triphosphate.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of ligase activity (obsolete GO:0051352)","synonyms":[{"name":"down regulation of ligase activity","type":"exact"},{"name":"down-regulation of ligase activity","type":"exact"},{"name":"downregulation of ligase activity","type":"exact"},{"name":"inhibition of ligase activity","type":"narrow"},{"name":"ligase inhibitor","type":"exact"}],"termid":"GO:0051352"}


id: FYPO:0005728
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle checkpoint phenotype in which deactivation of the mitotic spindle assembly checkpoint is normal (i.e. indistinguishable from wild type. The mitotic spindle assembly checkpoint normally delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and chromosomes are attached to the spindle.","definition_xrefs":["PomBase:mah","PMID:19592249","PomBase:vw","PMID:21664573"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal mitotic spindle assembly checkpoint","termid":"FYPO:0003762"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0000257","FYPO:0000002","FYPO:0001312","FYPO:0000298","FYPO:0001320"],"is_obsolete":false,"name":"normal deactivation of mitotic spindle assembly checkpoint","synonyms":[{"name":"normal deactivation of mitotic cell cycle spindle assembly checkpoint","type":"exact"},{"name":"normal mitotic spindle assembly checkpoint deactivation","type":"exact"},{"name":"normal mitotic spindle assembly checkpoint silencing","type":"exact"}],"termid":"FYPO:0005728"}


id: PBO:0034280
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-synapsed_via_type_III_bouton_to","termid":"PBO:0034280"}


id: PBO:0028171
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_RNA_pyrophosphohydrolase_activity","termid":"PBO:0028171"}


id: GO:0016010
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A multiprotein complex that forms a strong mechanical link between the cytoskeleton and extracellular matrix; typical of, but not confined to, muscle cells. The complex is composed of transmembrane, cytoplasmic, and extracellular proteins, including dystrophin, sarcoglycans, dystroglycan, dystrobrevins, syntrophins, sarcospan, caveolin-3, and NO synthase.","definition_xrefs":["PMID:16710609","PMID:15117830"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycoprotein complex","termid":"GO:0090665"},{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0005886","GO:0032991"],"is_obsolete":false,"name":"dystrophin-associated glycoprotein complex","synonyms":[{"name":"DGC","type":"exact"},{"name":"dystrophin glycoprotein complex","type":"exact"}],"termid":"GO:0016010"}


id: GO:0044536
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process which begins with venom being forced into an organism by the bite or sting of another organism, and ends with a reduction in the quantity of fibrinogen found in the bloodstream of the bitten/stung organism.","definition_xrefs":["GOC:jl","PMID:21130897","GOC:fj"],"direct_ancestors":[{"relation_name":"is_a","term_name":"venom-mediated perturbation of hemostasis","termid":"GO:0044483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"venom-mediated depletion of circulating fibrinogen","synonyms":[{"name":"envenomation resulting in depletion of circulating fibrinogen","type":"exact"},{"name":"envenomation resulting in depletion of circulating fibrinogen in another organism","type":"exact"},{"name":"envenomation resulting in depletion of circulating fibrinogen in other organism","type":"exact"},{"name":"envenomation resulting in negative regulation of circulating fibrinogen in other organism","type":"exact"}],"termid":"GO:0044536"}


id: PBO:0002084
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.3.1.4","termid":"PBO:0002084"}


id: PR:O74963
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- nca2 gene.","definition_xrefs":["UniProtKB:O74963","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear control of ATPase protein 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC4B4.02c","synonyms":[{"name":"Spom972h-nca2","type":"exact"}],"termid":"PR:O74963"}


id: GO:0031956
data:
  {"annotated_genes":["SJAG_00947"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[77135],"is_not":false,"summary":null,"term":"GO:0031956"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a medium-chain fatty acid + ATP + CoA = a medium-chain fatty acyl-CoA + AMP + diphosphate. A medium-chain fatty acid has an aliphatic tail containing 6 to 12 carbons.","definition_xrefs":["RHEA:48340"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid-CoA ligase activity","termid":"GO:0120515"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00947":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016874"],"is_obsolete":false,"name":"medium-chain fatty acid-CoA ligase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-8875013","EC:6.2.1.2"],"synonyms":[{"name":"medium-chain fatty acid activation","type":"related"},{"name":"medium-chain fatty-acid-CoA ligase activity","type":"exact"},{"name":"medium-chain-fatty-acid-CoA ligase activity","type":"exact"}],"termid":"GO:0031956","terms_by_termid":{"GO:0031956":null}}


id: MONDO:0012488
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hepatitis B virus, susceptibility to","secondary_identifiers":["MEDGEN:400632","OMIM:610424","UMLS:C1864880"],"synonyms":[{"name":"HBV, resistance to","type":"related"},{"name":"HBV, susceptibility to","type":"related"},{"name":"Hepatitis B Virus, resistance to","type":"related"},{"name":"hepatitis B virus infection, susceptibility to","type":"exact"},{"name":"hepatitis b virus, susceptibility to","type":"exact"}],"termid":"MONDO:0012488","xrefs":{"Monarch":{"xref_id":"0012488"}}}


id: GO:0061372
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of molecular signals initiated by the binding of a member of the activin family to its receptor on the surface of a target cell, and contributing to the process of heart jogging.","definition_xrefs":["GOC:signaling","GOC:dph","GOC:mtg_heart"],"gene_count":0,"genotype_count":0,"name":"obsolete activin receptor signaling pathway involved in heart jogging (obsolete GO:0061372)","synonyms":[{"name":"activin receptor signalling pathway involved in heart jogging","type":"exact"}],"termid":"GO:0061372"}


id: GO:0001519
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The posttranslational conversion of C-terminal glycine-extended peptides to C-terminal alpha-amidated peptides. Occurs to over half of all peptide hormones to give bioactive peptides. This is a two step process catalyzed by a peptidyl-glycine alpha-hydroxylating monooxygenase and a peptidyl-alpha-hydroxyglycine alpha-amidating lyase. In some organisms, this process is catalyzed by two separate enzymes, whereas in higher organisms, one polypeptide catalyzes both reactions.","definition_xrefs":["PMID:11028916"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide modification","termid":"GO:0031179"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptide amidation","termid":"GO:0001519"}


id: GO:0046205
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of nor-spermidine, a compound related to spermidine, N-(3-aminopropyl)-1,4-diaminobutane.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyamine catabolic process","termid":"GO:0006598"},{"relation_name":"is_a","term_name":"nor-spermidine metabolic process","termid":"GO:0046204"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"nor-spermidine catabolic process","synonyms":[{"name":"nor-spermidine breakdown","type":"exact"},{"name":"nor-spermidine catabolism","type":"exact"},{"name":"nor-spermidine degradation","type":"exact"}],"termid":"GO:0046205"}


id: PATO:0000964
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A optical quality inhering in a bearer by virtue of the bearer's lacking opacity.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"opacity","termid":"PATO:0000957"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transparent","synonyms":[{"name":"clear","type":"exact"}],"termid":"PATO:0000964"}


id: PBO:0113171
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Integral vacuolar membrane protein; involved in vacuole inheritance and morphology; activates Fab1p kinase activity under basal conditions and also after hyperosmotic shock; targeted to vacuole via AP-3 pathway","termid":"PBO:0113171"}


id: PBO:0078593
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 60 pseudogene 6, Y-linked","termid":"PBO:0078593"}


id: GO:0017018
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: phosphomyosin + H2O = myosin + phosphate.","definition_xrefs":["EC:3.1.3.16"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein serine/threonine phosphatase activity","termid":"GO:0004722"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0004721"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0003824","GO:0016788","GO:0004721","GO:0016787","GO:0140096","GO:0003674"],"is_obsolete":false,"name":"myosin phosphatase activity","secondary_identifiers":["GO:0017019","Reactome:R-HSA-390593","Reactome:R-HSA-445699"],"synonyms":[{"name":"myosin phosphatase myosin binding","type":"related"},{"name":"myosin phosphatase, intrinsic catalyst activity","type":"exact"}],"termid":"GO:0017018"}


id: PBO:0050934
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interferon alpha 4","termid":"PBO:0050934"}


id: MONDO:0004949
data:
  {"annotated_genes":["SJAG_02527"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87687],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009693"}]},"cv_name":"mondo","definition":"A neoplasm of follicle center B cells which has at least a partial follicular pattern. Follicular lymphomas comprise about 35% of adult non-Hodgkin lymphomas in the U.S. and 22% worldwide. Most patients have widespread disease at diagnosis. Morphologically, follicular lymphomas are classified as Grade 1, Grade 2, and Grade 3, depending on the percentage of the large lymphocytes present. The vast majority of cases (70-95%) express the BCL-2 rearrangement [t(14;18)]. Histological grade correlates with prognosis. Grades 1 and 2 follicular lymphomas are indolent and grade 3 is more aggressive (adapted from WHO, 2001).","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"B-cell neoplasm","termid":"MONDO:0004095"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02527":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"neoplasm of mature B-cells","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:706","NCIT:C27910","ONCOTREE:MBN","UMLS:C1334633","SCTID:269476000","NCIT:C3457","ICD9:202.0","MEDGEN:235305","EFO:0000096"],"synonyms":[{"name":"mature B-cell lymphocytic neoplasm","type":"exact"},{"name":"mature B-cell neoplasm","type":"exact"},{"name":"mature B-cell neoplasms","type":"related"}],"termid":"MONDO:0004949","terms_by_termid":{"MONDO:0009693":null},"xrefs":{"Monarch":{"xref_id":"0004949"}}}


id: PBO:0075848
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ssu-2 homolog","termid":"PBO:0075848"}


id: GO:0015462
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + protein(out) = ADP + phosphate + protein(in).","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-transporting ATPase activity","termid":"GO:0015450"},{"relation_name":"is_a","term_name":"ABC-type transporter activity","termid":"GO:0140359"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0140318"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0140318","GO:0005215"],"is_obsolete":false,"name":"ABC-type protein transporter activity","synonyms":[{"name":"ABC-type protein transmembrane transporter activity","type":"exact"},{"name":"ATPase-coupled protein transmembrane transporter activity","type":"related"},{"name":"pilin/fimbrilin exporter activity","type":"narrow"},{"name":"protein ABC transporter","type":"exact"},{"name":"protein-transmembrane transporting ATPase activity","type":"related"},{"name":"protein-transporting ATPase activity","type":"broad"}],"termid":"GO:0015462"}


id: PR:U3H042
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sos7 gene.","definition_xrefs":["PRO:DNx","UniProtKB:U3H042"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinetochore protein Sos7 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAPB17E12.06","synonyms":[{"name":"Spom972h-sos7","type":"exact"},{"name":"suppressor of spc7 protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:U3H042"}


id: MONDO:0100473
data:
  {"annotated_genes":["SJAG_00988","SJAG_01162","SJAG_04608","SJAG_00043","SJAG_03881","SJAG_01216","SJAG_03316","SJAG_01612","SJAG_01995","SJAG_01351"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86024],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009825"},{"annotations":[87150],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007205"},{"annotations":[86588,86589],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009285"},{"annotations":[86269],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009259"},{"annotations":[86144],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009947"},{"annotations":[86573],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009284"},{"annotations":[87221],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0019531"},{"annotations":[86126],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0033642"},{"annotations":[86374],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0018767"},{"annotations":[85516],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009593"}]},"cv_name":"mondo","definition":"An inherited metabolic disease that has its basis in the disruption of peptide and/or amine metabolic process.","definition_xrefs":["MONDO:patterns/inborn_metabolic"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn errors of metabolism","termid":"MONDO:0019052"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00043":null,"SJAG_00988":null,"SJAG_01162":null,"SJAG_01216":null,"SJAG_01351":null,"SJAG_01612":null,"SJAG_01995":null,"SJAG_03316":null,"SJAG_03881":null,"SJAG_04608":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"disorder of peptide and amine metabolism","references_by_uniquename":{"PB_REF:0000006":null},"termid":"MONDO:0100473","terms_by_termid":{"MONDO:0007205":null,"MONDO:0009259":null,"MONDO:0009284":null,"MONDO:0009285":null,"MONDO:0009593":null,"MONDO:0009825":null,"MONDO:0009947":null,"MONDO:0018767":null,"MONDO:0019531":null,"MONDO:0033642":null},"xrefs":{"Monarch":{"xref_id":"0100473"}}}


id: GO:1990703
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the Golgi medial membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.","definition_xrefs":["PMID:16038056","PMID:24119662","GOC:bhm"],"gene_count":0,"genotype_count":0,"name":"obsolete integral component of Golgi medial cisterna membrane (obsolete GO:1990703)","synonyms":[{"name":"integral component of medial-Golgi cisterna membrane","type":"exact"}],"termid":"GO:1990703"}


id: GO:0102940
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: phloroglucinol + S-adenosyl-L-methionine = H+ + 3,5-dihydroxyanisole + S-adenosyl-L-homocysteine.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete phloroglucinol O-methyltransferase activity (obsolete GO:0102940)","termid":"GO:0102940"}


id: PBO:0073591
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine hydroxymethyltransferase 2","termid":"PBO:0073591"}


id: PBO:0031298
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_septum_disassembly","termid":"PBO:0031298"}


id: PBO:0040217
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase family AAA domain containing 3B","termid":"PBO:0040217"}


id: GO:0051235
data:
  {"annotated_genes":["SJAG_01738","SJAG_01001","SJAG_04221","SJAG_01116","SJAG_00053","SJAG_00368","SJAG_03170","SJAG_01017","SJAG_03850","SJAG_00661","SJAG_00030"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104740,90767],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051685"},{"annotations":[67188],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032065"},{"annotations":[100540,105021,94384,111248],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097248"},{"annotations":[92490],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006621"},{"annotations":[109048],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0061454"},{"annotations":[115596,107401],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990854"}]},"cv_name":"biological_process","definition":"Any process in which a cell, substance or cellular entity, such as a protein complex or organelle, is maintained in a location and prevented from moving elsewhere.","definition_xrefs":["GOC:ai","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"localization","termid":"GO:0051179"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00030":null,"SJAG_00053":null,"SJAG_00368":null,"SJAG_00661":null,"SJAG_01001":null,"SJAG_01017":null,"SJAG_01116":null,"SJAG_01738":null,"SJAG_03170":null,"SJAG_03850":null,"SJAG_04221":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"maintenance of location","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000107":null},"synonyms":[{"name":"maintenance of localization","type":"exact"},{"name":"retention","type":"narrow"},{"name":"sequestering","type":"narrow"},{"name":"storage","type":"narrow"}],"termid":"GO:0051235","terms_by_termid":{"GO:0006621":null,"GO:0032065":null,"GO:0051685":null,"GO:0061454":null,"GO:0097248":null,"GO:1990854":null}}


id: GO:0042703
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cyclic, physiologic discharge through the vagina of blood and endometrial tissues from the nonpregnant uterus.","definition_xrefs":["GOC:curators","PMID:8693059"],"direct_ancestors":[{"relation_name":"is_a","term_name":"menstrual cycle phase","termid":"GO:0022601"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"menstruation","secondary_identifiers":["Wikipedia:Menstruation"],"termid":"GO:0042703"}


id: MONDO:0006473
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete tracheal squamous cell carcinoma (obsolete MONDO:0006473)","termid":"MONDO:0006473","xrefs":{"Monarch":{"xref_id":"0006473"}}}


id: GO:0120341
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The short portion of the radial spoke 2 (RS2) that is directly anchored to the A microtubule of an axonemal microtubule doublet.","definition_xrefs":["GOC:krc","PMID:25694453","PMID:22754630"],"direct_ancestors":[{"relation_name":"is_a","term_name":"radial spoke base","termid":"GO:0120339"},{"relation_name":"part_of","term_name":"radial spoke 2","termid":"GO:0120334"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"radial spoke base 2","termid":"GO:0120341"}


id: GO:1903021
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of phosphodiesterase activity, acting on 3'-phosphoglycolate-terminated DNA strands.","definition_xrefs":["GOC:TermGenie","PMID:12192046","GOC:rb","GO_REF:0000059"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of phosphodiesterase activity, acting on 3'-phosphoglycolate-terminated DNA strands (obsolete GO:1903021)","termid":"GO:1903021"}


id: PBO:0069047
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 293, pseudogene","termid":"PBO:0069047"}


id: FYPO:0002998
data:
  {"alleles_by_uniquename":{"SJAG_02592:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02592","name":"sty1delta","uniquename":"SJAG_02592:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[119575,119949],"is_not":false,"summary":null,"term":"FYPO:0002998"}]},"cv_name":"fission_yeast_phenotype","definition":"A cytokinesis phenotype observed in the vegetative growth phase of the life cycle in which the assembly and distribution of actin filaments and associated proteins does not occur, resulting in the failure to form an actomyosin contractile ring, and in which medial cortical nodes form irregular clumps instead of coalescing into the medial cortex ring.","definition_xrefs":["PomBase:mah","PMID:24127216"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished actomyosin contractile ring assembly","termid":"FYPO:0001009"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02592":null},"genotype_count":1,"genotypes_by_uniquename":{"sty1delta":{"display_name":"sty1delta","display_uniquename":"sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0005447","FYPO:0001985","FYPO:0000032","FYPO:0001320","FYPO:0000002","FYPO:0004803"],"is_obsolete":false,"name":"abolished actomyosin contractile ring assembly, clumped medial cortical nodes","references_by_uniquename":{"PMID:32915139":null,"PMID:33791858":null},"single_locus_annotated_genes":["SJAG_02592"],"single_locus_genotype_uniquenames":["sty1delta"],"synonyms":[{"name":"abolished actomyosin contractile ring assembly, clumped cytokinesis nodes","type":"exact"},{"name":"abolished actomyosin contractile ring assembly, clumped medial cortical nodes during mitotic cell cycle","type":"related"},{"name":"abolished actomyosin contractile ring assembly, clumped medial cortical nodes, during vegetative growth","type":"exact"},{"name":"abolished actomyosin contractile ring formation, clumped medial cortical nodes","type":"related"},{"name":"abolished contractile ring assembly, clumped medial cortical nodes","type":"exact"},{"name":"abolished cytokinetic contractile ring assembly, clumped medial cortical nodes","type":"exact"},{"name":"abolished cytokinetic ring assembly, clumped medial cortical nodes","type":"related"},{"name":"abolished cytokinetic ring formation, clumped medial cortical nodes","type":"related"},{"name":"abolished mitotic contractile ring assembly, clumped medial cortical nodes","type":"exact"},{"name":"actomyosin contractile ring assembly abolished, clumped medial cortical nodes","type":"exact"},{"name":"cytokinesis defects, contractile ring actin, absent, with clumped medial cortical nodes","type":"related"}],"termid":"FYPO:0002998","terms_by_termid":{"FYECO:0000248":null,"FYPO:0002998":null,"FYPO_EXT:0000001":null}}


id: FYPO:0002890
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the size, shape, or structure of the horsetail nucleus is abnormal. The horsetail nucleus forms during the rapid oscillatory movement at meiotic prophase I.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nuclear morphology during meiosis I","termid":"FYPO:0005651"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002403"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0002403"],"is_obsolete":false,"name":"abnormal horsetail nucleus morphology","synonyms":[{"name":"abnormal horsetail nuclear morphology","type":"exact"}],"termid":"FYPO:0002890"}


id: PBO:0054156
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1523","termid":"PBO:0054156"}


id: GO:1904296
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of osmolarity-sensing cation channel activity.","definition_xrefs":["GO_REF:0000059","GOC:TermGenie","PMID:18279313"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of osmolarity-sensing cation channel activity (obsolete GO:1904296)","synonyms":[{"name":"down regulation of osmolarity-sensing cation channel activity","type":"exact"},{"name":"down-regulation of osmolarity-sensing cation channel activity","type":"exact"},{"name":"downregulation of osmolarity-sensing cation channel activity","type":"exact"},{"name":"inhibition of osmolarity-sensing cation channel activity","type":"narrow"}],"termid":"GO:1904296"}


id: PBO:0050515
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HOXD cluster antisense RNA 2","termid":"PBO:0050515"}


id: MONDO:0012279
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete congenital muscular dystrophy merosin-positive (obsolete MONDO:0012279)","termid":"MONDO:0012279","xrefs":{"Monarch":{"xref_id":"0012279"}}}


id: MONDO:0025087
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An acute, highly contagious disease affecting swine of all ages and caused by the classical swine fever virus. It has a sudden onset with high morbidity and mortality.","definition_xrefs":["MESH:D006691"],"direct_ancestors":[{"relation_name":"is_a","term_name":"swine disease","termid":"MONDO:0024990"},{"relation_name":"is_a","term_name":"pestivirus infectious disease, non-human animal","termid":"MONDO:0700203"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"classical swine fever","synonyms":[{"name":"Hog cholera","type":"related"},{"name":"cholera, Hog","type":"related"},{"name":"swine fever","type":"related"},{"name":"swine fever, classical","type":"related"}],"termid":"MONDO:0025087","xrefs":{"Monarch":{"xref_id":"0025087"}}}


id: GO:0046314
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of phosphocreatine, a phosphagen of creatine which is synthesized and broken down by creatine phosphokinase.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphocreatine metabolic process","termid":"GO:0006603"},{"relation_name":"is_a","term_name":"phosphagen biosynthetic process","termid":"GO:0042396"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"phosphocreatine biosynthetic process","synonyms":[{"name":"phosphocreatine anabolism","type":"exact"},{"name":"phosphocreatine biosynthesis","type":"exact"},{"name":"phosphocreatine formation","type":"exact"},{"name":"phosphocreatine synthesis","type":"exact"}],"termid":"GO:0046314"}


id: GO:0009465
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete soluble cytochrome b562 (obsolete GO:0009465)","synonyms":[{"name":"soluble cytochrome b562","type":"exact"}],"termid":"GO:0009465"}


id: MONDO:0011735
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A form of Hyper IgM syndrome characterized by mutations of the CD40 gene. In this type, Immature B cells cannot receive signal 2 from helper T cells which is necessary to mature into mature B cells.","definition_xrefs":["Wikipedia:Hyper-IgM_syndrome_type_3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hyper-IgM syndrome","termid":"MONDO:0003947"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"hyper-IgM syndrome type 3","secondary_identifiers":["GARD:10579","DOID:0060023","UMLS:C1720957","Orphanet:101090","MEDGEN:328419","OMIM:606843"],"synonyms":[{"name":"CD40 deficiency","type":"related"},{"name":"CD40 hyper-IgM syndrome","type":"exact"},{"name":"HIGM3","type":"exact"},{"name":"hyper IgM syndrome 3","type":"related"},{"name":"hyper-IgM syndrome 3","type":"related"},{"name":"hyper-IgM syndrome caused by mutation in CD40","type":"exact"},{"name":"hyper-IgM syndrome due to CD40 deficiency","type":"exact"},{"name":"immunodeficiency with hyper IgM type 3","type":"related"},{"name":"immunodeficiency with hyper-IgM type 3","type":"exact"},{"name":"immunodeficiency with hyper-IgM, type 3","type":"related"},{"name":"type 3 hyper-IgM immunodeficiency","type":"exact"}],"termid":"MONDO:0011735","xrefs":{"Monarch":{"xref_id":"0011735"}}}


id: FYPO:0007619
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin is normal (i.e. indistinguishable from wild type) when the cell is subject to oxidative stress.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to chromatin during vegetative growth","termid":"FYPO:0001509"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0001312","FYPO:0000138","FYPO:0001320"],"is_obsolete":false,"name":"normal protein localization to chromatin during cellular response to oxidative stress","synonyms":[{"name":"normal protein localisation to chromatin during cellular response to oxidative stress","type":"exact"},{"name":"normal protein localization to chromatin during cellular response to oxidative stress during mitotic cell cycle","type":"related"},{"name":"normal protein localization to chromatin during cellular response to oxidative stress during vegetative growth","type":"exact"},{"name":"normal protein localization to chromatin during oxidative stress response","type":"exact"}],"termid":"FYPO:0007619"}


id: PBO:0050306
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 8","termid":"PBO:0050306"}


id: MONDO:0006152
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A non-neoplastic polypoid lesion in the colon. It may arise in a background of inflammatory bowel disease or colitis. It is characterized by the presence of a distorted epithelium, inflammation, and fibrosis.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"colonic neoplasm","termid":"MONDO:0005401"},{"relation_name":"is_a","term_name":"polyp of colon","termid":"MONDO:0021400"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"colon inflammatory polyp","secondary_identifiers":["UMLS:C0267392","EFO:1000184","NCIT:C5517","MEDGEN:78627"],"synonyms":[{"name":"colonic inflammatory polyp","type":"exact"},{"name":"inflammatory polyp of colon","type":"exact"},{"name":"inflammatory polyp of the colon","type":"exact"}],"termid":"MONDO:0006152","xrefs":{"Monarch":{"xref_id":"0006152"}}}


id: PBO:0001490
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.7.1.32","termid":"PBO:0001490"}


id: GO:0072589
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A box H/ACA RNP complex that is located in the Cajal body of the nucleoplasm. In higher eukaryotes, box H/ACA RNP located in Cajal bodies mediate pseudouridylation of spliceosomal snRNAs.","definition_xrefs":["GOC:mah","PMID:17284456","PMID:20227365"],"direct_ancestors":[{"relation_name":"is_a","term_name":"box H/ACA RNP complex","termid":"GO:0072588"},{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"},{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"},{"relation_name":"part_of","term_name":"Cajal body","termid":"GO:0015030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"part_of","termid":"GO:0005654"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005634","GO:0005654","GO:0005575"],"is_obsolete":false,"name":"box H/ACA scaRNP complex","synonyms":[{"name":"nucleoplasmic box H/ACA RNP pseudouridylase complex","type":"exact"}],"termid":"GO:0072589"}


id: MONDO:0005691
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Infections caused by viruses of the genus cardiovirus, family picornaviridae.","definition_xrefs":["MESH:D018188"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Picornaviridae infectious disease","termid":"MONDO:0005914"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cardiovirus infectious disease","secondary_identifiers":["EFO:0007194","MEDGEN:60193","UMLS:C0206617"],"synonyms":[{"name":"Cardiovirus infection","type":"related"},{"name":"infection, Cardiovirus","type":"related"},{"name":"infections, Cardiovirus","type":"related"}],"termid":"MONDO:0005691","xrefs":{"Monarch":{"xref_id":"0005691"}}}


id: MONDO:0006079
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare, cytologically malignant ameloblastoma that may metastasize.","definition_xrefs":["NCIT:C7492"],"direct_ancestors":[{"relation_name":"is_a","term_name":"head and neck carcinoma","termid":"MONDO:0002038"},{"relation_name":"is_a","term_name":"bone carcinoma","termid":"MONDO:0002415"},{"relation_name":"is_a","term_name":"digestive system carcinoma","termid":"MONDO:0006181"},{"relation_name":"is_a","term_name":"odontogenic neoplasm","termid":"MONDO:0021192"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0004335"],"is_obsolete":false,"name":"ameloblastic carcinoma","secondary_identifiers":["GARD:11855","MEDGEN:231088","EFO:1000078","UMLS:C1314678","Orphanet:314422"],"synonyms":[{"name":"ameloblastic carcinoma","type":"exact"},{"name":"odontoma, ameloblastic, malignant","type":"exact"}],"termid":"MONDO:0006079","xrefs":{"Monarch":{"xref_id":"0006079"}}}


id: PBO:0049780
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HLA complex group 14","termid":"PBO:0049780"}


id: PBO:0040625
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BANF1 pseudogene 4","termid":"PBO:0040625"}


id: GO:0043049
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The initial developmental process that will lead to the formation of the vertebrate inner ear. The otic placode forms as a thickening of the head ectoderm adjacent to the developing hindbrain.","definition_xrefs":["GOC:go_curators","PMID:12668634"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ectodermal placode formation","termid":"GO:0060788"},{"relation_name":"part_of","term_name":"otic vesicle formation","termid":"GO:0030916"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"otic placode formation","termid":"GO:0043049"}


id: PBO:0029016
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-centromeric_outer_repeat_transcript-derived_siRNA_absent","termid":"PBO:0029016"}


id: PBO:0075785
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine and arginine rich splicing factor 8B, pseudogene","termid":"PBO:0075785"}


id: GO:0047204
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-glucarate + chlorogenate = (-)-quinate + 2-O-caffeoylglucarate.","definition_xrefs":["RHEA:23204","EC:2.3.1.98"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-hydroxycinnamoyltransferase activity","termid":"GO:0050737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0016746"],"is_obsolete":false,"name":"chlorogenate-glucarate O-hydroxycinnamoyltransferase activity","secondary_identifiers":["MetaCyc:2.3.1.98-RXN","KEGG_REACTION:R02998"],"synonyms":[{"name":"chlorogenate:glucarate O-(hydroxycinnamoyl)transferase activity","type":"related"},{"name":"chlorogenate:glucarate caffeoyltransferase activity","type":"related"},{"name":"chlorogenic acid:glucaric acid O-caffeoyltransferase activity","type":"related"}],"termid":"GO:0047204"}


id: PBO:0089592
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"para-aminobenzoate synthase","termid":"PBO:0089592"}


id: GO:0071475
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, an increase in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hyperosmotic salinity response","termid":"GO:0042538"},{"relation_name":"is_a","term_name":"cellular response to salt stress","termid":"GO:0071472"},{"relation_name":"is_a","term_name":"cellular hyperosmotic response","termid":"GO:0071474"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular hyperosmotic salinity response","synonyms":[{"name":"cellular response to hyperosmotic salt stress","type":"exact"}],"termid":"GO:0071475"}


id: PBO:0040603
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"B melanoma antigen","termid":"PBO:0040603"}


id: PBO:0046668
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"estrogen related receptor alpha","termid":"PBO:0046668"}


id: MONDO:0018553
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Urachal diverticulum is the rarest type of congenital urachal anomaly resulting from the failure of the distal urachus to close at its point of connectivity to the bladder that is usually asymptomatic but can be associated with recurrent urinary tract infections and other complications.","definition_xrefs":["Orphanet:431347"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital urachal anomaly","termid":"MONDO:0018565"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"urachal diverticulum","secondary_identifiers":["NCIT:C123254","SCTID:253899000","GARD:21800","icd11.foundation:1816352256","UMLS:C0431743","MEDGEN:609128"],"synonyms":[{"name":"Vesicourachal diverticulum","type":"exact"}],"termid":"MONDO:0018553","xrefs":{"Monarch":{"xref_id":"0018553"}}}


id: PBO:0000780
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AP-3 adaptor complex subunit Aps3 (predicted)","termid":"PBO:0000780"}


id: PBO:0034804
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein kinase activator Skb5","termid":"PBO:0034804"}


id: PBO:0017077
data:
  {"annotation_feature_type":"gene","cv_name":"cat_act","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNase P cleavage specifity not affected by sequences flanking the G+1 cleavage site","termid":"PBO:0017077"}


id: MONDO:0008475
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A condition in which there is forward displacement of a vertebral bone over the on below it.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disease of bone structure","termid":"MONDO:0000836"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spondylolisthesis","secondary_identifiers":["icd11.foundation:1075039772","DOID:6682","MESH:D013168","HP:0003302","UMLS:C0038016","EFO:0007493","NCIT:C35033","OMIM:184200","MEDGEN:52470","SCTID:274152003"],"synonyms":[{"name":"spondylolisthesis","type":"exact"},{"name":"spondylolisthesis (disease)","type":"exact"}],"termid":"MONDO:0008475","xrefs":{"Monarch":{"xref_id":"0008475"}}}


id: MONDO:0040673
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant germ cell tumor that affects the peritoneum.","definition_xrefs":["NCIT:C136410"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peritoneum cancer","termid":"MONDO:0002087"},{"relation_name":"is_a","term_name":"extragonadal germ cell cancer","termid":"MONDO:0003113"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"malignant peritoneal germ cell tumor","secondary_identifiers":["UMLS:C4526657","MEDGEN:1612836"],"synonyms":[{"name":"malignant peritoneal germ cell tumor","type":"exact"}],"termid":"MONDO:0040673","xrefs":{"Monarch":{"xref_id":"0040673"}}}


id: GO:0044379
data:
  {"annotated_genes":["SJAG_02228"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[107534],"is_not":false,"summary":null,"term":"GO:0044379"}]},"cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, an actin cortical patch.","definition_xrefs":["PMID:21620704","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to cell cortex","termid":"GO:0072697"},{"relation_name":"is_a","term_name":"protein localization to actin cytoskeleton","termid":"GO:1903119"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02228":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"protein localization to actin cortical patch","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"protein localisation to actin cortical patch","type":"exact"}],"termid":"GO:0044379","terms_by_termid":{"GO:0044379":null}}


id: PBO:0016539
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"seipin homolog, involved in lipid catabolism (predicted)","termid":"PBO:0016539"}


id: PBO:0113377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative deubiquitinating enzyme anchored to the outer mitochondrial membrane; probably not important for general mitochondrial functioning, but may perform a more specialized function at mitochondria","termid":"PBO:0113377"}


id: PBO:0000101
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane sodium ion/proton antiporter Sod2","termid":"PBO:0000101"}


id: PBO:0048646
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gap junction protein beta 6","termid":"PBO:0048646"}


id: PBO:0046112
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 4E family member 3","termid":"PBO:0046112"}


id: MONDO:0022791
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coarse face hypotonia constipation","synonyms":[{"name":"Sondheimer syndrome","type":"related"}],"termid":"MONDO:0022791","xrefs":{"Monarch":{"xref_id":"0022791"}}}


id: MONDO:0024479
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A epithelial neoplasm that involves the colon.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"colonic neoplasm","termid":"MONDO:0005401"},{"relation_name":"is_a","term_name":"epithelial neoplasm","termid":"MONDO:0005626"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"epithelial tumor of colon","synonyms":[{"name":"colon epithelial neoplasm","type":"exact"}],"termid":"MONDO:0024479","xrefs":{"Monarch":{"xref_id":"0024479"}}}


id: PBO:0062112
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily C member 11","termid":"PBO:0062112"}


id: PBO:0001234
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cohesin-associated protein Pds5","termid":"PBO:0001234"}


id: PR:O94516
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pex16 gene.","definition_xrefs":["UniProtKB:O94516","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxisomal membrane protein PEX16 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC646.15c","synonyms":[{"name":"Spom972h-pex16","type":"exact"},{"name":"peroxin-16 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94516"}


