# terms

id: PBO:0084960
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Myo-inositol transporter; member of the sugar transporter superfamily; expressed constitutively; ITR2 has a paralog, ITR1, that arose from the whole genome duplication","termid":"PBO:0084960"}


id: MONDO:1012819
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital hypotrichosis that occurs in pigs due to a mutation in the HR gene created by genetic engineering or gene editing.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital hypotrichosis, non-human animal","termid":"MONDO:1012977"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypotrichosis, HR-related, pig","secondary_identifiers":["OMIA:002229-9823"],"termid":"MONDO:1012819","xrefs":{"Monarch":{"xref_id":"1012819"}}}


id: GO:1903055
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of extracellular matrix organization.","definition_xrefs":["GO_REF:0000058","GOC:BHF","GOC:TermGenie","PMID:22357537","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular component organization","termid":"GO:0051130"},{"relation_name":"is_a","term_name":"regulation of extracellular matrix organization","termid":"GO:1903053"},{"relation_name":"positively_regulates","term_name":"extracellular matrix organization","termid":"GO:0030198"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of extracellular matrix organization","synonyms":[{"name":"activation of extracellular matrix organisation","type":"narrow"},{"name":"activation of extracellular matrix organization","type":"narrow"},{"name":"activation of extracellular matrix organization and biogenesis","type":"related"},{"name":"positive regulation of extracellular matrix organisation","type":"exact"},{"name":"positive regulation of extracellular matrix organization and biogenesis","type":"related"},{"name":"up regulation of extracellular matrix organisation","type":"exact"},{"name":"up regulation of extracellular matrix organization","type":"exact"},{"name":"up regulation of extracellular matrix organization and biogenesis","type":"related"},{"name":"up-regulation of extracellular matrix organisation","type":"exact"},{"name":"up-regulation of extracellular matrix organization","type":"exact"},{"name":"up-regulation of extracellular matrix organization and biogenesis","type":"related"},{"name":"upregulation of extracellular matrix organisation","type":"exact"},{"name":"upregulation of extracellular matrix organization","type":"exact"},{"name":"upregulation of extracellular matrix organization and biogenesis","type":"related"}],"termid":"GO:1903055"}


id: GO:1990546
data:
  {"annotated_genes":["SJAG_00275","SJAG_01872"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71924,72925],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006843"}]},"cv_name":"biological_process","definition":"The process in which a tricarboxylic acid is transported across a mitochondrial membrane, into or out of the mitochondrion.","definition_xrefs":["GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tricarboxylic acid transmembrane transport","termid":"GO:0035674"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00275":null,"SJAG_01872":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"mitochondrial tricarboxylic acid transmembrane transport","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:1990546","terms_by_termid":{"GO:0006843":null}}


id: PR:O60123
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC16G5.09 gene.","definition_xrefs":["UniProtKB:O60123","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pheromone-processing carboxypeptidase kex1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16G5.09","synonyms":[{"name":"Spom972h-SPBC16G5.09","type":"exact"},{"name":"carboxypeptidase D (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O60123"}


id: MONDO:0001440
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"keratoconjunctivitis","termid":"MONDO:0004768"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"neurotrophic keratoconjunctivitis","secondary_identifiers":["DOID:12125","MEDGEN:509777","UMLS:C0155084","ICD9:370.35","SCTID:77080005"],"termid":"MONDO:0001440","xrefs":{"Monarch":{"xref_id":"0001440"}}}


id: PBO:0047623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fidgetin like 2","termid":"PBO:0047623"}


id: MONDO:1010897
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any lysosomal disease characterized by the accumulation of sphingomyelin and cholesterol in lysosomes that occurs in cats due to a mutation in the SMPD1 gene.","definition_xrefs":["PMID:32347185"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lysosomal storage disease, domestic cat","termid":"MONDO:1010861"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Niemann-Pick disease, SMPD1-related, domestic cat","secondary_identifiers":["OMIA:001795-9685"],"synonyms":[{"name":"Niemann-Pick disease, type A, domestic cat","type":"related"}],"termid":"MONDO:1010897","xrefs":{"Monarch":{"xref_id":"1010897"}}}


id: GO:1904217
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of CDP-diacylglycerol-serine O-phosphatidyltransferase activity.","definition_xrefs":["PMID:16120614","GO_REF:0000059","GOC:rl","GOC:TermGenie","GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of CDP-diacylglycerol-serine O-phosphatidyltransferase activity (obsolete GO:1904217)","synonyms":[{"name":"regulation of CDP-diacylglycerol-L-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"regulation of CDP-diacylglycerol:L-serine 3-O-phosphatidyltransferase activity","type":"exact"},{"name":"regulation of CDP-diglyceride-L-serine phosphatidyltransferase activity","type":"exact"},{"name":"regulation of CDP-diglyceride:serine phosphatidyltransferase activity","type":"exact"},{"name":"regulation of CDP-diglycerine-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"regulation of CDPdiacylglycerol-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"regulation of CDPdiglyceride-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"regulation of PS synthase activity","type":"exact"},{"name":"regulation of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol (CDPdiglyceride):L-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"regulation of cytidine 5'-diphospho-1,2-diacyl-sn-glycerol:L-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"regulation of cytidine diphosphoglyceride-serine O-phosphatidyltransferase activity","type":"exact"},{"name":"regulation of phosphatidylserine synthase activity","type":"exact"},{"name":"regulation of phosphatidylserine synthetase activity","type":"exact"},{"name":"regulation of serine exchange enzyme","type":"broad"}],"termid":"GO:1904217"}


id: PBO:0017789
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iron-sulfur cluster assembly protein Cia2 (predicted)","termid":"PBO:0017789"}


id: GO:0006153
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete purine nucleosidase reaction (obsolete GO:0006153)","synonyms":[{"name":"purine nucleosidase reaction","type":"exact"}],"termid":"GO:0006153"}


id: PBO:0062270
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily H member 1","termid":"PBO:0062270"}


id: PBO:0048073
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferritin heavy chain 1 pseudogene 24","termid":"PBO:0048073"}


id: MONDO:0015195
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Atresia of the urethra is a rare congenital bladder outlet obstruction, a fetal lower urinary tract obstruction (fetal LUTO), that is usually fatal. Unless there is some other egress for the urine to escape the bladder, such as patent urachus or anuro-rectal communication, these lesions are not compatible with renal development.","definition_xrefs":["Orphanet:105"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fetal lower urinary tract obstruction","termid":"MONDO:0018559"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"atresia of urethra","secondary_identifiers":["HP:0000068","ICD10CM:Q64.3","GARD:18678","MedDRA:10064895","MEDGEN:576882","SCTID:253902002","UMLS:C0345345"],"synonyms":[{"name":"atresia of urethra","type":"exact"},{"name":"atresia of urethra (disease)","type":"exact"},{"name":"urethral atresia","type":"exact"}],"termid":"MONDO:0015195","xrefs":{"Monarch":{"xref_id":"0015195"}}}


id: GO:0032837
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell cycle process in which genetic material, in the form of chromosomes, is organized and then physically separated and apportioned to two or more sets during a normally chiasmate meiosis under the condition that chiasma have not occurred between a particular pair of homologs. Distributive segregation is a backup mechanism to ensure the segregation of homologs that have failed to cross over - either as a consequence of mutation or not, as, for example, the 4th chromosome of Drosophila melanogaster (which never exchanges, presumably due to its small size) - but nevertheless segregate normally.","definition_xrefs":["GOC:ma","GOC:sart","GOC:expert_rsh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiotic chromosome segregation","termid":"GO:0045132"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0140013"}],"interesting_parent_ids":["GO:0008150","GO:0140013","GO:0007049"],"is_obsolete":false,"name":"distributive segregation","termid":"GO:0032837"}


id: MONDO:0010594
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete inherited genitourinary tract anomalies (obsolete MONDO:0010594)","secondary_identifiers":["OMIM:305690","HP:0000119","MESH:C564424"],"synonyms":[{"name":"genitourinary tract anomalies","type":"exact"},{"name":"inherited genitourinary tract anomalies (disease)","type":"exact"}],"termid":"MONDO:0010594","xrefs":{"Monarch":{"xref_id":"0010594"}}}


id: PBO:0078775
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Asn (anticodon GTT) 2-7","termid":"PBO:0078775"}


id: PBO:0080197
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VENT homeobox pseudogene 5","termid":"PBO:0080197"}


id: GO:0044776
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The DNA polymerase III core complex consists of the alpha,epsilon and theta subunits and is carries out the polymerase and the 3'-5' exonuclease proofreading activities.","definition_xrefs":["GOC:jl","UniProt:P06710"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"},{"relation_name":"part_of","term_name":"DNA polymerase III complex","termid":"GO:0009360"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"part_of","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"DNA polymerase III, core complex","termid":"GO:0044776"}


id: GO:1901311
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of gene expression involved in extracellular matrix organization.","definition_xrefs":["GOC:TermGenie","GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of gene expression involved in extracellular matrix organization (obsolete GO:1901311)","synonyms":[{"name":"regulation of expression of extracellular matrix proteins","type":"exact"},{"name":"regulation of extracellular matrix protein production","type":"related"}],"termid":"GO:1901311"}


id: MONDO:0007582
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Cockayne syndrome B (obsolete MONDO:0007582)","termid":"MONDO:0007582","xrefs":{"Monarch":{"xref_id":"0007582"}}}


id: PBO:0072445
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S29 pseudogene 9","termid":"PBO:0072445"}


id: PBO:0003382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methionine sulfoxide (predicted)","termid":"PBO:0003382"}


id: PBO:0049824
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HD domain containing 3","termid":"PBO:0049824"}


id: PBO:0091607
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Important For Sex","termid":"PBO:0091607"}


id: GO:0042690
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of crystal cell differentiation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of crystal cell differentiation","termid":"GO:0042689"},{"relation_name":"is_a","term_name":"negative regulation of hemocyte differentiation","termid":"GO:0045611"},{"relation_name":"negatively_regulates","term_name":"crystal cell differentiation","termid":"GO:0042688"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of crystal cell differentiation","synonyms":[{"name":"down regulation of crystal cell differentiation","type":"exact"},{"name":"down-regulation of crystal cell differentiation","type":"exact"},{"name":"downregulation of crystal cell differentiation","type":"exact"},{"name":"inhibition of crystal cell differentiation","type":"narrow"}],"termid":"GO:0042690"}


id: FYPO:0007363
data:
  {"alleles_by_uniquename":{"SJAG_02796:allele-1":{"allele_type":"amino_acid_mutation","description":"A343T","gene_uniquename":"SJAG_02796","name":"pyk1-A343T","uniquename":"SJAG_02796:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[119511],"is_not":false,"summary":null,"term":"FYPO:0007363"}]},"cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of pyruvate kinase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"},{"relation_name":"is_a","term_name":"abnormal metabolic process","termid":"FYPO:0000860"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02796":null},"genotype_count":1,"genotypes_by_uniquename":{"pyk1-A343T-A343T-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"pyk1-A343T(aa)","display_uniquename":"pyk1-A343T-A343T-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02796:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0000654","FYPO:0000652","FYPO:0000661"],"is_obsolete":false,"name":"abnormal pyruvate kinase activity","references_by_uniquename":{"PMID:37164017":null},"single_locus_annotated_genes":["SJAG_02796"],"single_locus_genotype_uniquenames":["pyk1-A343T-A343T-amino_acid_mutation-expression-not_assayed_or_wild_type"],"termid":"FYPO:0007363","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000126":null,"FYPO:0007363":null,"FYPO_EXT:0000002":null}}


id: PBO:0090393
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Clr6 histone deacetylase associated PHD finger protein Cph1","termid":"PBO:0090393"}


id: PBO:0081986
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger and SCAN domain containing 12 pseudogene 1","termid":"PBO:0081986"}


id: GO:0004896
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a cytokine and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.","definition_xrefs":["GOC:mah","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane signaling receptor activity","termid":"GO:0004888"},{"relation_name":"is_a","term_name":"immune receptor activity","termid":"GO:0140375"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"cytokine receptor activity","secondary_identifiers":["GO:0004907"],"synonyms":[{"name":"IL receptor","type":"narrow"},{"name":"hematopoietin/interferon-class (D200-domain) cytokine receptor activity","type":"related"},{"name":"interleukin receptor activity","type":"narrow"}],"termid":"GO:0004896"}


id: GO:0071349
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an interleukin-12 stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to interleukin-12","termid":"GO:0070671"},{"relation_name":"is_a","term_name":"cellular response to cytokine stimulus","termid":"GO:0071345"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to interleukin-12","synonyms":[{"name":"cellular response to IL-12","type":"exact"}],"termid":"GO:0071349"}


id: FYPO:0006754
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which promoter-enhancer looping occurs to a lower extent than normal when the cell is subject to glucose starvation. Promoter-enhancer looping is mediated by interactions between proteins bound to DNA at promoters and at enhancers, or by a single protein binding at both sites.","definition_xrefs":["PMID:28934464","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromosome organization","termid":"FYPO:0000641"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000641","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"decreased promoter-enhancer looping during glucose starvation","synonyms":[{"name":"decreased promoter-enhancer looping during glucose depletion","type":"exact"},{"name":"decreased promoter-enhancer looping during glucose deprivation","type":"exact"}],"termid":"FYPO:0006754"}


id: MONDO:0013501
data:
  {"annotated_genes":["SJAG_03345"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87104],"is_not":false,"summary":null,"term":"MONDO:0013501"}]},"cv_name":"mondo","definition":"Any amyotrophic lateral sclerosis in which the cause of the disease is a mutation in the VCP gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial amyotrophic lateral sclerosis","termid":"MONDO:0005144"},{"relation_name":"is_a","term_name":"frontotemporal dementia with motor neuron disease","termid":"MONDO:0017161"},{"relation_name":"is_a","term_name":"frontotemporal dementia and/or amyotrophic lateral sclerosis","termid":"MONDO:0030923"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03345":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0002039"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0002039"],"is_obsolete":false,"name":"frontotemporal dementia and/or amyotrophic lateral sclerosis 6","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1759760","UMLS:C5436279","DOID:0060205","GARD:15733","OMIM:613954"],"synonyms":[{"name":"VCP amyotrophic lateral sclerosis","type":"exact"},{"name":"amyotrophic lateral sclerosis caused by mutation in VCP","type":"exact"},{"name":"amyotrophic lateral sclerosis, with or without frontotemporal dementia","type":"exact"}],"termid":"MONDO:0013501","terms_by_termid":{"MONDO:0013501":null},"xrefs":{"Monarch":{"xref_id":"0013501"}}}


id: PBO:0086324
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein with similarity to Kre9p; Kre9p is involved in cell wall beta 1,6-glucan synthesis; overproduction suppresses growth defects of a kre9 null mutant; required for propionic acid resistance","termid":"PBO:0086324"}


id: GO:0070733
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + protein = diphosphate + adenylyl-protein; mediates the addition of an adenylyl (adenosine 5'-monophosphate; AMP group) to L-serine, L-threonine, and L-tyrosine residues in target proteins.","definition_xrefs":["PMID:19362538","GOC:mah","PMID:19039103","PMID:33947243"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenylyltransferase activity","termid":"GO:0070566"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016779"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016779","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"AMPylase activity","secondary_identifiers":["EC:2.7.7.108"],"synonyms":[{"name":"AMPylator","type":"related"},{"name":"adenosine monophosphate-protein transferase activity","type":"exact"},{"name":"protein adenylyltransferase activity","type":"related"}],"termid":"GO:0070733"}


id: PBO:0038356
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-activity_directly_positively_regulates_activity_of","termid":"PBO:0038356"}


id: PBO:0066184
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBM7 pseudogene 1","termid":"PBO:0066184"}


id: MONDO:0015632
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial oxidative phosphorylation disorder","termid":"MONDO:0016387"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004069"}],"interesting_parent_ids":["MONDO:0004069","MONDO:0005066"],"is_obsolete":false,"name":"FASTKD2-related infantile mitochondrial encephalomyopathy","secondary_identifiers":["MEDGEN:1665220","Orphanet:166105","UMLS:C4755278","icd11.foundation:356231901","GARD:17026"],"termid":"MONDO:0015632","xrefs":{"Monarch":{"xref_id":"0015632"}}}


id: MONDO:0011706
data:
  {"annotated_genes":["SJAG_04757","SJAG_03866"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87295,87296],"is_not":false,"summary":null,"term":"MONDO:0011706"}]},"cv_name":"mondo","definition":"Kufor-Rakeb syndrome (KRS) is a rare genetic neurodegenerative disorder characterized by juvenile Parkinsonism, pyramidal degeneration (dystonia), supranuclear palsy, and cognitive impairment.","definition_xrefs":["Orphanet:306674"],"direct_ancestors":[{"relation_name":"is_a","term_name":"juvenile-onset Parkinson disease","termid":"MONDO:0000828"},{"relation_name":"is_a","term_name":"neurodegeneration with brain iron accumulation","termid":"MONDO:0018307"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03866":null,"SJAG_04757":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002039"}],"interesting_parent_ids":["MONDO:0002039","MONDO:0005559","MONDO:0005066"],"is_obsolete":false,"name":"Kufor-Rakeb syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C1847640","GARD:9174","MESH:C537177","OMIM:606693","DOID:0060556","MEDGEN:338281","NORD:1959"],"synonyms":[{"name":"KRPPD","type":"related"},{"name":"KRS","type":"related"},{"name":"Kufor Rakeb Syndrome","type":"exact"},{"name":"Kufor-Rakeb syndrome","type":"exact"},{"name":"PARK9","type":"exact"},{"name":"Pallidopyramidal Degeneration with supranuclear upgaze paresis and dementia","type":"related"},{"name":"Pallidopyramidal degeneration with supranuclear upgaze paresis, and dementia","type":"related"},{"name":"Parkinson disease 9, autosomal recessive","type":"related"},{"name":"Parkinson disease 9, autosomal recessive, juvenile-onset","type":"related"},{"name":"Parkinson disease type 9","type":"related"},{"name":"autosomal recessive Parkinson disease 9","type":"exact"},{"name":"autosomal recessive juvenile onset Parkinson disease 9","type":"exact"},{"name":"ceroid lipofuscinosis, neuronal, 12","type":"related"},{"name":"park 9","type":"related"}],"termid":"MONDO:0011706","terms_by_termid":{"MONDO:0011706":null},"xrefs":{"Monarch":{"xref_id":"0011706"}}}


id: MONDO:0014782
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autosomal recessive limb-girdle muscular dystrophy type 2X is a rare subtype of autosomal recessive limb-girdle muscular dystrophy characterized by atrioventricular block resulting in repeated syncope episodes, elevated creatine kinase serum levels and adult-onset of slowly progressive proximal limb skeletal muscle weakness and atrophy. Muscular dystrophic changes observed in muscle biopsy include diameter variability, increased central nuclei, and presence of necrotic and regenerating fibers.","definition_xrefs":["Orphanet:476084"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive limb-girdle muscular dystrophy","termid":"MONDO:0015152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0005336"],"is_obsolete":false,"name":"autosomal recessive limb-girdle muscular dystrophy type 2X","secondary_identifiers":["UMLS:C5568138","GARD:17847","DOID:0110290","MEDGEN:1799561","OMIM:616812"],"synonyms":[{"name":"BVES autosomal recessive limb-girdle muscular dystrophy","type":"exact"},{"name":"LGMD2X","type":"exact"},{"name":"autosomal recessive limb-girdle muscular dystrophy caused by mutation in BVES","type":"exact"},{"name":"autosomal recessive limb-girdle muscular dystrophy-cardiac arrhythmia syndrome","type":"exact"},{"name":"muscular dystrophy, limb-girdle, autosomal recessive 25","type":"exact"},{"name":"muscular dystrophy, limb-girdle, type 2X","type":"exact"},{"name":"muscular dystrophy, limb-girdle, type 2x","type":"exact"}],"termid":"MONDO:0014782","xrefs":{"Monarch":{"xref_id":"0014782"}}}


id: SO:0001612
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant with in the CDS that causes in frame elongation of the resulting polypeptide sequence at the C terminus.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"elongated_polypeptide_C_terminal","termid":"SO:0001610"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongated_in_frame_polypeptide_C_terminal","synonyms":[{"name":"elongated in frame polypeptide C terminal","type":"exact"}],"termid":"SO:0001612"}


id: PBO:0089051
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methyltransferase with rhodanese domain, unknown specificity","termid":"PBO:0089051"}


id: MONDO:0100528
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A partial deletion of the short arm of chromosome 16 characterized by developmental delay, intellectual disability, speech delay, autism spectrum disorder, epilepsy, hypogonadism, and hypotonia. The behavioral profile includes impulsivity, compulsivity, stubbornness, manipulative behaviors, temper tantrums, and aggressive behaviors.","definition_xrefs":["Orphanet:500055"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Hao-Fountain syndrome","termid":"MONDO:0014805"},{"relation_name":"is_a","term_name":"partial deletion of the short arm of chromosome 16","termid":"MONDO:0016894"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"Hao-Fountain syndrome due to 16p13.2 microdeletion","secondary_identifiers":["MEDGEN:1804697","UMLS:C5680086","GARD:17920"],"synonyms":[{"name":"16p13.2 microdeletion syndrome","type":"exact"},{"name":"Del(16)(p13.2)","type":"exact"},{"name":"chromosome 16P13.2 deletion syndrome","type":"exact"},{"name":"chromosome 16p13.2 deletion syndrome","type":"exact"},{"name":"monosomy 16p13.2","type":"exact"}],"termid":"MONDO:0100528","xrefs":{"Monarch":{"xref_id":"0100528"}}}


id: MONDO:0009394
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Juvenile Paget disease is a very rare form of Paget disease of the bone characterized by a general increase in bone turnover with increased bone resorption and deposition, resulting in cortical and trabecular thickening, and clinically presenting as progressive skeletal deformities, growth impairment, fractures, vertebral collapse, skull enlargement and sensorineural hearing loss.","definition_xrefs":["Orphanet:2801"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete primary bone dysplasia with increased bone density (obsolete MONDO:0019703)","termid":"MONDO:0019703"},{"relation_name":"is_a","term_name":"bone Paget disease","termid":"MONDO:0005382"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"juvenile Paget disease","secondary_identifiers":["MESH:C537701","SCTID:9723006","MEDGEN:75678","UMLS:C0268414","GARD:2831","icd11.foundation:762002965","DOID:0081368","OMIM:239000","NCIT:C131861"],"synonyms":[{"name":"Hereditary Hyperphosphatasia","type":"exact"},{"name":"JPD","type":"related"},{"name":"JPG","type":"exact"},{"name":"PDB5","type":"related"},{"name":"Paget disease juvenile type","type":"related"},{"name":"Paget disease of bone 5, juvenile-onset","type":"related"},{"name":"familial hyperphosphatasia","type":"exact"},{"name":"familial osteoectasia","type":"exact"},{"name":"hereditary hyperphosphatasia","type":"exact"},{"name":"hyperostosid corticalis deformans juvenilis","type":"related"},{"name":"hyperostosis corticalis deformans juvenilis","type":"exact"},{"name":"hyperphosphatasemia, chronic congenital idiopathic","type":"related"},{"name":"hyperphosphatasia, familial idiopathic","type":"related"},{"name":"juvenile Paget disease","type":"exact"},{"name":"juvenile Paget's disease","type":"exact"},{"name":"juvenile Pagets disease","type":"related"},{"name":"osteoectasia, familial","type":"related"}],"termid":"MONDO:0009394","xrefs":{"Monarch":{"xref_id":"0009394"}}}


id: PR:O13784
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rps2401 gene.","definition_xrefs":["UniProtKB:O13784","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S24-A (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17G6.06","synonyms":[{"name":"Spom972h-rps2401","type":"exact"}],"termid":"PR:O13784"}


id: PBO:0067708
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal 6","termid":"PBO:0067708"}


id: PBO:0056943
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 9-3","termid":"PBO:0056943"}


id: MONDO:0007341
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Cleidorhizomelic syndrome is a rhizo-mesomelic dysplasia characterized by rhizomelic short stature/dwarfism in combination with lateral clavicular defects. Additional manifestations include brachydactyly with bilateral clinodactyly and hypoplastic middle phalanx of the fifth digit. X-ray demonstrated an apparent Y-shaped or bifid distal clavicle. Cleidorhizomelic syndrome has been reported in one family (mother and son) and is suspected to be transmitted in an autosomal dominant manner. There have been no further descriptions in the literature since 1988.","definition_xrefs":["Orphanet:1453"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"skeletal dysplasia","termid":"MONDO:0018230"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cleidorhizomelic syndrome","secondary_identifiers":["OMIM:119650","UMLS:C1861515","MEDGEN:350042","MESH:C536428","GARD:5532","SCTID:719471002"],"synonyms":[{"name":"Wallis Zieff Goldblatt syndrome","type":"related"},{"name":"Wallis-Zieff-Goldblatt syndrome","type":"exact"},{"name":"brachydactyly, enlarged diaphysis, rhizomelic micromelia, short stature and abnormal clavicle","type":"related"},{"name":"cleido rhizomelic syndrome","type":"related"},{"name":"cleidorhizomelic syndrome","type":"exact"},{"name":"rhizomelic shortness with clavicular defect","type":"exact"}],"termid":"MONDO:0007341","xrefs":{"Monarch":{"xref_id":"0007341"}}}


id: MONDO:1010098
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any congenital heart disease caused by pathogenic variation(s) in the TFAP2B gene, which encodes the transcription factor AP-2β. This disorder is characterized by patent ductus arteriosus, facial dysmorphism and hand anomalies. Additional features include sensorineural hearing loss, scoliosis, dental anomalies, and central diabetes insipidus. Given the spectrum of symptoms associated with this condition, patients may exhibit a combination of these features. The underlying mechanism of the spectrum disorder is both dominant negative and loss-of-function. Pathogenic missense variants reported in Char syndrome patients appear to be dominant negative while loss-of-function alleles in PDA patients are likely to act through haploinsufficiency.","definition_xrefs":["Orphanet:46627","Orphanet:466729","PMID:31012281"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital heart disease","termid":"MONDO:0005453"},{"relation_name":"is_a","term_name":"cardiogenetic disease","termid":"MONDO:0100547"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"TFAP2B-related congenital heart disease spectrum disorder","synonyms":[{"name":"TFAP2B-related PDA and Char syndrome spectrum disorder","type":"exact"}],"termid":"MONDO:1010098","xrefs":{"Monarch":{"xref_id":"1010098"}}}


id: MOD:01702
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively removes a proton from a residue 1-carboxyl group (referred to as the alpha-carboxyl), forming a carboxylate anion.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"deprotonated residue","termid":"MOD:01701"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-carboxyl deprotonated residue","synonyms":[{"name":"C1H-NRes","type":"exact"}],"termid":"MOD:01702"}


id: SO:0002344
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Mitochondrial SSU rRNA is an RNA component of the small subunit of mitochondrial ribosomes.","definition_xrefs":["PMID:3044395"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mt_rRNA","termid":"SO:0002128"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mt_SSU_rRNA","synonyms":[{"name":"MT SSU rRNA","type":"exact"},{"name":"mitochondrial SSU rRNA","type":"exact"},{"name":"mitochondrial small subunit rRNA","type":"exact"}],"termid":"SO:0002344"}


id: GO:1903851
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cristae formation.","definition_xrefs":["GOC:pad","GO_REF:0000058","GOC:PARL","GOC:TermGenie","PMID:19279012"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of organelle organization","termid":"GO:0010639"},{"relation_name":"is_a","term_name":"regulation of cristae formation","termid":"GO:1903850"},{"relation_name":"negatively_regulates","term_name":"cristae formation","termid":"GO:0042407"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0061024"},{"rel_name":"regulates","termid":"GO:0061024"},{"rel_name":"regulates","termid":"GO:0007005"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0007005"}],"interesting_parent_ids":["GO:0007005","GO:0008150","GO:0061024"],"is_obsolete":false,"name":"negative regulation of cristae formation","synonyms":[{"name":"down regulation of cristae formation","type":"exact"},{"name":"down-regulation of cristae formation","type":"exact"},{"name":"downregulation of cristae formation","type":"exact"},{"name":"inhibition of cristae formation","type":"narrow"}],"termid":"GO:1903851"}


id: PBO:0001798
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-mannosidase (predicted)","termid":"PBO:0001798"}


id: PBO:0042879
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cilia and flagella associated protein 206","termid":"PBO:0042879"}


id: PBO:0090632
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cardiolipin synthase/ hydrolase fusion protein Crd1","termid":"PBO:0090632"}


id: PBO:0050956
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interferon gamma receptor 2","termid":"PBO:0050956"}


id: GO:0030945
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. The catalysis of phosphate removal from a phosphotyrosine using cysteine as a nucleophile and proceed by means of a thiol-phosphate intermediate.","definition_xrefs":["GOC:hjd"],"gene_count":0,"genotype_count":0,"name":"obsolete protein tyrosine phosphatase activity, via thiol-phosphate intermediate (obsolete GO:0030945)","termid":"GO:0030945"}


id: PBO:0067269
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 343, pseudogene","termid":"PBO:0067269"}


id: GO:0016205
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: selenocysteine + S-adenosyl-L-methionine = Se-methylselenocysteine + S-adenosyl-homocysteine.","definition_xrefs":["EC:2.1.1.280","PMID:10026151"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Se-methyltransferase activity","termid":"GO:0051995"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0016741","GO:0016740","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"selenocysteine methyltransferase activity","secondary_identifiers":["MetaCyc:RXN-11061","RHEA:26341"],"termid":"GO:0016205"}


id: PBO:0060773
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH:ubiquinone oxidoreductase subunit B7","termid":"PBO:0060773"}


id: PBO:0053637
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 683","termid":"PBO:0053637"}


id: PBO:0076171
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfotransferase family, cytosolic, 1C, member 2 pseudogene 2","termid":"PBO:0076171"}


id: GO:0035185
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The first nine mitotic division cycles of the insect embryo, during which the dividing nuclei lie deep in the interior of the egg and divide nearly synchronously. This is the first phase of the syncytial period where nuclei divide in a common cytoplasm without cytokinesis.","definition_xrefs":["ISBN:0879694238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell cycle comprising mitosis without cytokinesis","termid":"GO:0033301"},{"relation_name":"is_a","term_name":"mitotic cell cycle, embryonic","termid":"GO:0045448"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"preblastoderm mitotic cell cycle","termid":"GO:0035185"}


id: GO:0000715
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The identification of lesions in DNA, such as pyrimidine-dimers, intrastrand cross-links, and bulky adducts. The wide range of substrate specificity suggests the repair complex recognizes distortions in the DNA helix.","definition_xrefs":["GOC:elh","PMID:10197977"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome organization","termid":"GO:0051276"},{"relation_name":"part_of","term_name":"nucleotide-excision repair","termid":"GO:0006289"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006281"},{"rel_name":"part_of","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006259","GO:0008150","GO:0006281"],"is_obsolete":false,"name":"nucleotide-excision repair, DNA damage recognition","secondary_identifiers":["Reactome:R-HSA-5696394"],"synonyms":[{"name":"pyrimidine-dimer repair, DNA damage recognition","type":"related"}],"termid":"GO:0000715"}


id: MONDO:0004977
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A mature T-cell non-Hodgkin lymphoma, characterized by systemic disease and a polymorphous infiltrate involving lymph nodes and extranodal sites. The clinical course is typically aggressive.","definition_xrefs":["NCIT:C7528","PMID:22700722"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mature T-cell and NK-cell non-Hodgkin lymphoma","termid":"MONDO:0000430"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"angioimmunoblastic T-cell lymphoma","secondary_identifiers":["Orphanet:86886","MESH:D007119","MEDGEN:7025","EFO:0000255","GARD:11973","ICD10CM:C86.5","ICD9:202.70","MedDRA:10002449","ICDO:9767/1","NANDO:2200029","ONCOTREE:AITL","SCTID:413537009","DOID:0111147","icd11.foundation:1254954229","ICDO:9705/3","UMLS:C0020981"],"synonyms":[{"name":"AILD","type":"exact"},{"name":"AILT","type":"exact"},{"name":"AITL","type":"related"},{"name":"T-cell lymphoma, AILD type","type":"exact"},{"name":"angioimmunoblastic T-cell lymphoma","type":"exact"},{"name":"angioimmunoblastic lymphadenopathy","type":"exact"},{"name":"angioimmunoblastic lymphadenopathy type T-cell lymphoma","type":"exact"},{"name":"angioimmunoblastic lymphadenopathy with Dysproteinemia","type":"exact"},{"name":"immunoblastic lymphadenopathy","type":"exact"},{"name":"lymphogranulomatosis X","type":"exact"}],"termid":"MONDO:0004977","xrefs":{"Monarch":{"xref_id":"0004977"}}}


id: PBO:0046289
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EMAP like 6","termid":"PBO:0046289"}


id: PBO:0082909
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cysteine desulfurase (Nfs1p) activator; essential for the formation of the persulfide intermediate at the desulfurase active site during pyridoxal phosphate-dependent desulfuration of cysteine; required for mitochondrial iron-sulfur cluster biosynthesis; exclusive to eukaryotes, implicated as eukaryotic supplement to the bacterium-derived Fe-S cluster (ISC) assembly apparatus; involved in regulation of iron metabolism; member of the LYR protein family","termid":"PBO:0082909"}


id: GO:0110034
data:
  {"annotated_genes":["SJAG_00266","SJAG_02311","SJAG_02426","SJAG_02481","SJAG_01245"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92447,93111,100804,108346,116772],"is_not":false,"summary":null,"term":"GO:0110034"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the adenylate cyclase-activating glucose-activated G protein-coupled receptor signaling pathway.","definition_xrefs":["GOC:al","PMID:24297439"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway","termid":"GO:0106072"},{"relation_name":"is_a","term_name":"regulation of adenylate cyclase-activating glucose-activated G protein-coupled receptor signaling pathway","termid":"GO:0110033"},{"relation_name":"is_a","term_name":"negative regulation of glucose mediated signaling pathway","termid":"GO:1902660"},{"relation_name":"negatively_regulates","term_name":"adenylate cyclase-activating glucose-activated G protein-coupled receptor signaling pathway","termid":"GO:0010619"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00266":null,"SJAG_01245":null,"SJAG_02311":null,"SJAG_02426":null,"SJAG_02481":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of adenylate cyclase-activating glucose-activated G protein-coupled receptor signaling pathway","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"negative regulation of adenylate cyclase-activating glucose-activated G-protein coupled receptor signaling pathway","type":"exact"}],"termid":"GO:0110034","terms_by_termid":{"GO:0110034":null}}


id: PBO:0069430
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 695, pseudogene","termid":"PBO:0069430"}


id: MONDO:0021494
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign neoplasm that involves the parotid gland.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"parotid gland neoplasm","termid":"MONDO:0021243"},{"relation_name":"is_a","term_name":"benign neoplasm of major salivary gland","termid":"MONDO:0021492"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"benign neoplasm of parotid gland","secondary_identifiers":["ICD10CM:D11.0","NCIT:C4770","SCTID:92279000","UMLS:C0496857","icd11.foundation:1688299444","MEDGEN:99220"],"synonyms":[{"name":"benign neoplasm of parotid","type":"exact"},{"name":"benign neoplasm of the parotid","type":"exact"},{"name":"benign neoplasm of the parotid gland","type":"exact"},{"name":"benign parotid gland neoplasm","type":"exact"},{"name":"benign parotid gland tumor","type":"exact"},{"name":"benign parotid gland tumour","type":"exact"},{"name":"benign parotid neoplasm","type":"exact"},{"name":"benign parotid tumor","type":"exact"},{"name":"benign parotid tumour","type":"exact"},{"name":"benign tumor of parotid","type":"exact"},{"name":"benign tumor of parotid gland","type":"exact"},{"name":"benign tumor of the parotid","type":"exact"},{"name":"benign tumor of the parotid gland","type":"exact"},{"name":"benign tumour of parotid","type":"exact"},{"name":"benign tumour of parotid gland","type":"exact"},{"name":"benign tumour of the parotid","type":"exact"},{"name":"benign tumour of the parotid gland","type":"exact"},{"name":"parotid gland benign neoplasm","type":"exact"}],"termid":"MONDO:0021494","xrefs":{"Monarch":{"xref_id":"0021494"}}}


id: MONDO:0015417
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"facial cleft","termid":"MONDO:0015411"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Tessier number 6 facial cleft","secondary_identifiers":["GARD:19969","MEDGEN:609365","icd11.foundation:1934815559","UMLS:C0432120","Orphanet:141265"],"termid":"MONDO:0015417","xrefs":{"Monarch":{"xref_id":"0015417"}}}


id: GO:0033798
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3,3',5'-triiodo-L-thyronine + iodide + acceptor + H+ = L-thyroxine + acceptor-H2.","definition_xrefs":["RHEA:18897"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond","termid":"GO:0046992"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"thyroxine 5-deiodinase activity","secondary_identifiers":["EC:1.21.99.3","MetaCyc:1.97.1.11-RXN"],"synonyms":[{"name":"acceptor:3,3',5'-triiodo-L-thyronine oxidoreductase (iodinating) activity","type":"related"},{"name":"diiodothyronine 5'-deiodinase activity","type":"broad"},{"name":"inner ring-deiodinating pathway","type":"exact"},{"name":"iodothyronine 5-deiodinase activity","type":"related"},{"name":"iodothyronine inner ring monodeiodinase activity","type":"related"},{"name":"type III iodothyronine deiodinase activity","type":"narrow"}],"termid":"GO:0033798"}


id: MONDO:0018127
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"16q24.1 microdeletion syndrome is a partial autosomal monosomy characterized clinically by lethal pulmonary disease that presents as severe respiratory distress and refractory pulmonary hypertension within a few hours after birth and typically results in death from respiratory failure within the first months of life. Characteristic histological features of lung tissue include paucity of alveolar wall capillaries, alveolar wall thickening, muscular hypertrophy of the pulmonary arteries, and malposition of the small pulmonary veins. Various additional congenital malformations may be associated, mostly gastrointestinal (intestinal malrotation and atresias, anular pancreas), genitourinary (dilatation of urinary tracts, duplicated uterus) and cardiovascular anomalies (hypoplastic left heart and other congenital heart defects).","definition_xrefs":["Orphanet:352629"],"direct_ancestors":[{"relation_name":"is_a","term_name":"respiratory system disorder","termid":"MONDO:0005087"},{"relation_name":"is_a","term_name":"partial deletion of the long arm of chromosome 16","termid":"MONDO:0016914"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"16q24.1 microdeletion syndrome","secondary_identifiers":["MEDGEN:1653385","GARD:21523","UMLS:C4749464"],"synonyms":[{"name":"Del(16)(q24.1)","type":"exact"},{"name":"monosomy 16q24.1","type":"exact"}],"termid":"MONDO:0018127","xrefs":{"Monarch":{"xref_id":"0018127"}}}


id: MONDO:0100085
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A cancer that involves the upper limb long bone.","direct_ancestors":[{"relation_name":"is_a","term_name":"cancer affecting bone of limb skeleton","termid":"MONDO:0024311"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"cancer of long bone of upper limb","secondary_identifiers":["UMLS:C0684596","MEDGEN:671616"],"synonyms":[{"name":"cancer of fore limb long bone","type":"exact"},{"name":"cancer of long bone of fore limb","type":"exact"},{"name":"cancer of long bone of forelimb","type":"exact"},{"name":"cancer of long bone of upper extremity","type":"exact"},{"name":"cancer of upper extremity long bone","type":"exact"},{"name":"long bones of upper limb cancer","type":"exact"},{"name":"malignant neoplasm of upper limb long bone","type":"exact"},{"name":"malignant upper limb long bone neoplasm","type":"exact"}],"termid":"MONDO:0100085","xrefs":{"Monarch":{"xref_id":"0100085"}}}


id: FYPO:0006523
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which a smaller than normal proportion of cells in the population remains viable after entering stationary phase following arrest at the mitotic G2/M phase transition of the mitotic cell cycle.","definition_xrefs":["PMID:11598020","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"loss of viability in stationary phase","termid":"FYPO:0000245"},{"relation_name":"is_a","term_name":"loss of viability following cell cycle arrest at mitotic G2/M phase transition","termid":"FYPO:0006522"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002057"}],"interesting_parent_ids":["FYPO:0002057","FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"loss of viability in stationary phase following entry from mitotic G2 phase","synonyms":[{"name":"decreased viability in stationary phase following entry from mitotic G2 phase","type":"exact"},{"name":"loss of cell population viability in stationary phase following entry from mitotic G2 phase","type":"exact"},{"name":"loss of viability following mitotic G2 arrest and stationary phase entry","type":"exact"},{"name":"loss of viability in stationary phase following entry from mitotic G2/M phase transition","type":"exact"},{"name":"loss of viability of following entry into stationary phase from mitotic G2 phase","type":"exact"},{"name":"reduced viability in stationary phase following entry from mitotic G2 phase","type":"related"}],"termid":"FYPO:0006523"}


id: GO:0033612
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a receptor that possesses protein serine/threonine kinase activity.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor binding","termid":"GO:0005102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"receptor serine/threonine kinase binding","synonyms":[{"name":"transmembrane receptor protein serine/threonine kinase ligand binding","type":"related"}],"termid":"GO:0033612"}


id: MONDO:0008771
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An extremely rare syndrome which is characterized by hypoplastic amelogenesis imperfecta (hypoplastic dental enamel) and nephrocalcinosis (precipitation of calcium salts in renal tissue). Oral manifestations include yellow and misshaped teeth, delayed tooth eruption, and intrapulpal calcifications. Nephrocalcinosis is often asymptomatic but can progress during late childhood or early adulthood to impaired renal function (e.g. recurrent urinary infections and renal tubular acidosis), and rarely to end-stage renal failure.","definition_xrefs":["Orphanet:1031"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete nephropathy secondary to a storage or other metabolic disease (obsolete MONDO:0019743)","termid":"MONDO:0019743"},{"relation_name":"is_a","term_name":"amelogenesis imperfecta","termid":"MONDO:0019507"},{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amelogenesis imperfecta type 1G","secondary_identifiers":["OMIM:614253","OMIM:204690","SCTID:109477002","DOID:0110066","UMLS:C2931783","Orphanet:171836","MESH:C538241","MEDGEN:419162","GARD:646","ICD9:520.5"],"synonyms":[{"name":"AI1G","type":"exact"},{"name":"AIGFS","type":"exact"},{"name":"ERS","type":"exact"},{"name":"FAM20A amelogenesis imperfecta","type":"exact"},{"name":"absent enamel, nephrocalcinosis and apparently normal calcium metabolism","type":"related"},{"name":"amelogenesis imperfecta and gingival fibromatosis syndrome","type":"exact"},{"name":"amelogenesis imperfecta and nephrocalcinosis","type":"related"},{"name":"amelogenesis imperfecta caused by mutation in FAM20A","type":"exact"},{"name":"amelogenesis imperfecta hypoplastic type, IG","type":"related"},{"name":"amelogenesis imperfecta hypoplastic with nephrocalcinosis","type":"exact"},{"name":"amelogenesis imperfecta nephrocalcinosis","type":"related"},{"name":"amelogenesis imperfecta type IG","type":"exact"},{"name":"amelogenesis imperfecta, hypoplastic, with nephrocalcinosis","type":"related"},{"name":"amelogenesis imperfecta, type IG","type":"related"},{"name":"amelogenesis imperfecta, type IG (enamel-renal syndrome)","type":"exact"},{"name":"amelogenesis imperfecta-gingival hyperplasia syndrome","type":"exact"},{"name":"amelogenesis imperfecta-nephrocalcinosis syndrome","type":"related"},{"name":"enamel renal syndrome","type":"related"},{"name":"enamel-renal syndrome","type":"exact"},{"name":"enamel-renal-gingival syndrome","type":"exact"},{"name":"ers","type":"exact"},{"name":"generalised enamel hypoplasia and renal dysfunction","type":"related"},{"name":"generalized enamel hypoplasia and renal dysfunction","type":"related"}],"termid":"MONDO:0008771","xrefs":{"Monarch":{"xref_id":"0008771"}}}


id: GO:0031105
data:
  {"annotated_genes":["SJAG_01277","SJAG_01769","SJAG_04375","SJAG_03374","SJAG_00663","SJAG_04470","SJAG_03688"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[94861,100475,106384,116357],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032152"},{"annotations":[100478,101321,98254,104282],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032151"}]},"cv_name":"cellular_component","definition":"A protein complex containing septins. Typically, these complexes contain multiple septins and are oligomeric.","definition_xrefs":["PMID:15385632","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"cell cortex","termid":"GO:0005938"},{"relation_name":"part_of","term_name":"septin cytoskeleton","termid":"GO:0032156"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00663":null,"SJAG_01277":null,"SJAG_01769":null,"SJAG_03374":null,"SJAG_03688":null,"SJAG_04375":null,"SJAG_04470":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005938"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005938","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"septin complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0031105","terms_by_termid":{"GO:0032151":null,"GO:0032152":null}}


id: PBO:0073394
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SET domain containing 9","termid":"PBO:0073394"}


id: MONDO:0011762
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal recessive nonsyndromic deafness in which the cause of the disease is a mutation in the OTOA gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hearing loss, autosomal recessive","termid":"MONDO:0019588"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0019497"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0019497"],"is_obsolete":false,"name":"autosomal recessive nonsyndromic hearing loss 22","secondary_identifiers":["MESH:C564633","OMIM:607039","UMLS:C1846896","DOID:0110480","GARD:22601","MEDGEN:339636"],"synonyms":[{"name":"DFNB22","type":"narrow"},{"name":"OTOA autosomal recessive nonsyndromic deafness","type":"narrow"},{"name":"autosomal recessive deafness 22","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness 22","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness caused by mutation in OTOA","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness type 22","type":"narrow"},{"name":"autosomal recessive nonsyndromic hearing loss 22","type":"exact"},{"name":"deafness, autosomal recessive 22","type":"narrow"},{"name":"deafness, autosomal recessive type 22","type":"narrow"}],"termid":"MONDO:0011762","xrefs":{"Monarch":{"xref_id":"0011762"}}}


id: PBO:0087137
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein that activates mRNA decapping directly; binds to mRNA substrate and enhances activity of decapping proteins Dcp1p and Dcp2p; has a role in translation during heat stress; protein becomes more abundant and forms cytoplasmic foci in response to DNA replication stress; EDC1 has a paralog, EDC2, that arose from the whole genome duplication","termid":"PBO:0087137"}


id: MONDO:0014404
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Webb-Dattani syndrome","secondary_identifiers":["UMLS:C4014708","MEDGEN:863145","OMIM:615926","Orphanet:370006"],"synonyms":[{"name":"WEBB-Dattani syndrome","type":"related"},{"name":"WEDAS","type":"related"},{"name":"Webb-Dattani syndrome","type":"exact"},{"name":"hypothalamic insufficiency-secondary microcephaly-visual impairment-urinary anomalies syndrome","type":"exact"},{"name":"hypothalamo-pituitary-frontotemporal hypoplasia with visual and renal anomalies","type":"related"}],"termid":"MONDO:0014404","xrefs":{"Monarch":{"xref_id":"0014404"}}}


id: PR:Q9UUI8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A GDP-fucose transporter 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01987"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized transporter C22F8.04 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22F8.04","secondary_identifiers":["UniProtKB:Q9UUI8"],"synonyms":[{"name":"Spom972h-SLC35C1","type":"exact"}],"termid":"PR:Q9UUI8"}


id: PBO:0069934
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1227, pseudogene","termid":"PBO:0069934"}


id: PBO:0055029
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2444","termid":"PBO:0055029"}


id: MONDO:0000538
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete spindle epithelial tumor with thymus-like differentiation tumor (obsolete MONDO:0000538)","termid":"MONDO:0000538","xrefs":{"Monarch":{"xref_id":"0000538"}}}


id: PBO:0004448
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U6 snRNP-associated protein Lsm5 (predicted)","termid":"PBO:0004448"}


id: PR:Q9UT24
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A U5 small nuclear ribonucleoprotein 200 kDa helicase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO00590","PANTHER:PTHR11752:SF7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre-mRNA-splicing factor brr2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC9.03c","secondary_identifiers":["UniProtKB:Q9UT24"],"synonyms":[{"name":"Spom972h-SNRNP200","type":"exact"},{"name":"pre-mRNA-splicing factor spp41 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"pre-mRNA-splicing helicase BRR2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UT24"}


id: GO:0060244
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the rate or extent of cell proliferation in response to cell density.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell population proliferation","termid":"GO:0008285"},{"relation_name":"part_of","term_name":"contact inhibition","termid":"GO:0060242"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cell proliferation involved in contact inhibition","termid":"GO:0060244"}


id: PBO:0087368
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sporulation-specific protein with a leucine zipper motif; subunit of the MIS complex which controls mRNA methylation during during the induction of sporulation","termid":"PBO:0087368"}


id: GO:1900846
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of naphtho-gamma-pyrone biosynthetic process.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of ketone biosynthetic process","termid":"GO:0010566"},{"relation_name":"regulates","term_name":"naphtho-gamma-pyrone biosynthetic process","termid":"GO:1900787"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"regulation of naphtho-gamma-pyrone biosynthetic process","synonyms":[{"name":"regulation of naphtho-gamma-pyrone anabolism","type":"exact"},{"name":"regulation of naphtho-gamma-pyrone biosynthesis","type":"exact"},{"name":"regulation of naphtho-gamma-pyrone formation","type":"exact"},{"name":"regulation of naphtho-gamma-pyrone synthesis","type":"exact"},{"name":"regulation of naphtho-gamma-pyrones anabolism","type":"related"},{"name":"regulation of naphtho-gamma-pyrones biosynthesis","type":"related"},{"name":"regulation of naphtho-gamma-pyrones biosynthetic process","type":"related"},{"name":"regulation of naphtho-gamma-pyrones formation","type":"related"},{"name":"regulation of naphtho-gamma-pyrones synthesis","type":"related"}],"termid":"GO:1900846"}


id: PBO:0085606
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in control of DNA replication; binds Rap1p C-terminus, telomeres, centromeres, replication origins; contributes to resection of DNA double strand breaks (DSBs); acts synergistically with Rif2p to help control telomere length and establish telomeric silencing; in addition to controlling DNA replication initiation, plays ongoing role after initiation and controls events at blocked replication forks","termid":"PBO:0085606"}


id: MONDO:0012786
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Juvenile cataract - microcornea - renal glucosuria is an extremely rare autosomal dominant association reported in a single Swiss family and characterized clinically by juvenile cataract associated with bilateral microcornea, and renal glucosuria without other renal tubular defects.","definition_xrefs":["Orphanet:247794"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete nephropathy secondary to a storage or other metabolic disease (obsolete MONDO:0019743)","termid":"MONDO:0019743"},{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"disorder of carbohydrate transmembrane transport and absorption","termid":"MONDO:0017706"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0005066","MONDO:0037792"],"is_obsolete":false,"name":"juvenile cataract-microcornea-renal glucosuria syndrome","secondary_identifiers":["MEDGEN:934773","OMIM:612018","GARD:17196","MESH:C567434","DOID:0070353","UMLS:C4310806","SCTID:722457005"],"synonyms":[{"name":"CJMG","type":"related"},{"name":"CTRCT47","type":"related"},{"name":"cataract 47","type":"related"},{"name":"cataract 47, juvenile, with microcornea","type":"exact"},{"name":"cataract, juvenile, with microcornea","type":"related"},{"name":"cataract, juvenile, with microcornea and glucosuria","type":"related"},{"name":"cataract, juvenile, with microcornea and glucosuria, formerly","type":"related"},{"name":"juvenile cataract-microcornea-renal glucosuria syndrome","type":"exact"}],"termid":"MONDO:0012786","xrefs":{"Monarch":{"xref_id":"0012786"}}}


id: PBO:0081087
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger DHHC-type palmitoyltransferase 17","termid":"PBO:0081087"}


id: PBO:0046213
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongin C pseudogene 6","termid":"PBO:0046213"}


id: PBO:0056149
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mab-21 like 4","termid":"PBO:0056149"}


id: PBO:0048686
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glioblastoma down-regulated RNA","termid":"PBO:0048686"}


id: PBO:0054137
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1503","termid":"PBO:0054137"}


id: PBO:0047886
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, folic acid type, rare, fra(5)(q35)","termid":"PBO:0047886"}


id: GO:0006879
data:
  {"annotated_genes":["SJAG_03862","SJAG_01694","SJAG_00802","SJAG_04743","SJAG_04675","SJAG_03667","SJAG_00792","SJAG_04607","SJAG_00532","SJAG_02474","SJAG_02968","SJAG_00822","SJAG_02457","SJAG_01004","SJAG_04031","SJAG_02834","SJAG_04677","SJAG_02735","SJAG_04032"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[59023,71563,74663,75282,78366,78425,92664,94418,104620],"is_not":false,"summary":null,"term":"GO:0006879"},{"annotations":[104148,94472,78032,94465,100850],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0010106"},{"annotations":[104150],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033212"},{"annotations":[113601],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0098711"},{"annotations":[78035,92810],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033215"},{"annotations":[69573,62069,62173],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033214"}]},"cv_name":"biological_process","definition":"A homeostatic process involved in the maintenance of a steady state level of iron ions within a cell.","definition_xrefs":["GOC:ai","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular monoatomic cation homeostasis","termid":"GO:0030003"},{"relation_name":"is_a","term_name":"inorganic ion homeostasis","termid":"GO:0098771"}],"gene_count":19,"genes_by_uniquename":{"SJAG_00532":null,"SJAG_00792":null,"SJAG_00802":null,"SJAG_00822":null,"SJAG_01004":null,"SJAG_01694":null,"SJAG_02457":null,"SJAG_02474":null,"SJAG_02735":null,"SJAG_02834":null,"SJAG_02968":null,"SJAG_03667":null,"SJAG_03862":null,"SJAG_04031":null,"SJAG_04032":null,"SJAG_04607":null,"SJAG_04675":null,"SJAG_04677":null,"SJAG_04743":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0098771"}],"interesting_parent_ids":["GO:0008150","GO:0098771"],"is_obsolete":false,"name":"intracellular iron ion homeostasis","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"secondary_identifiers":["Reactome:R-HSA-917937"],"synonyms":[{"name":"cellular iron ion homeostasis","type":"exact"},{"name":"iron homeostasis","type":"broad"}],"termid":"GO:0006879","terms_by_termid":{"GO:0006879":null,"GO:0010106":null,"GO:0033212":null,"GO:0033214":null,"GO:0033215":null,"GO:0098711":null}}


id: GO:0072388
data:
  {"annotated_genes":["SJAG_01937"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[78948],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006747"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of flavin adenine dinucleotide, which acts as a coenzyme or prosthetic group of various flavoprotein oxidoreductase enzymes.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide biosynthetic process","termid":"GO:0009165"},{"relation_name":"is_a","term_name":"flavin-containing compound biosynthetic process","termid":"GO:0042727"},{"relation_name":"is_a","term_name":"flavin adenine dinucleotide metabolic process","termid":"GO:0072387"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01937":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"flavin adenine dinucleotide biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"FAD or FADH2 biosynthetic process","type":"exact"},{"name":"flavin adenine dinucleotide anabolism","type":"exact"},{"name":"flavin adenine dinucleotide biosynthesis","type":"exact"},{"name":"flavin adenine dinucleotide formation","type":"exact"},{"name":"flavin adenine dinucleotide synthesis","type":"exact"}],"termid":"GO:0072388","terms_by_termid":{"GO:0006747":null}}


id: GO:0039706
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a coreceptor. A coreceptor acts in cooperation with a primary receptor to transmit a signal within the cell.","definition_xrefs":["GOC:bf","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"co-receptor binding","termid":"GO:0039706"}


id: GO:0046089
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of cytosine, 4-amino-2-hydroxypyrimidine, a pyrimidine derivative that is one of the five main bases found in nucleic acids; it occurs widely in cytidine derivatives.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete cytosine biosynthetic process (obsolete GO:0046089)","synonyms":[{"name":"cytosine anabolism","type":"exact"},{"name":"cytosine biosynthesis","type":"exact"},{"name":"cytosine formation","type":"exact"},{"name":"cytosine synthesis","type":"exact"}],"termid":"GO:0046089"}


id: PBO:0068969
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 213, pseudogene","termid":"PBO:0068969"}


id: PBO:0014285
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MDP syndrome","termid":"PBO:0014285"}


id: GO:0043988
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H3 by the addition of an phosphate group to a serine residue at position 28 of the histone.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H3-S28 phosphorylation (obsolete GO:0043988)","synonyms":[{"name":"histone H3 phosphorylation at S28","type":"exact"},{"name":"histone H3S28 phosphorylation","type":"exact"}],"termid":"GO:0043988"}


id: PR:Q10245
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A very-long-chain 3-oxoacyl-CoA reductase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO00944"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"very-long-chain 3-oxoacyl-CoA reductase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4G9.15","secondary_identifiers":["UniProtKB:Q10245"],"synonyms":[{"name":"3-ketoacyl-CoA reductase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"3-ketoreductase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"KAR (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-HSD17B12","type":"exact"},{"name":"microsomal beta-keto-reductase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q10245"}


id: GO:0003213
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the right cardiac atrium is generated and organized.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac atrium morphogenesis","termid":"GO:0003209"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac right atrium morphogenesis","termid":"GO:0003213"}


id: PBO:0057328
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 520c","termid":"PBO:0057328"}


id: PBO:0088303
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNARE Tlg1","termid":"PBO:0088303"}


id: MONDO:0005884
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Infection with flukes of the genus Opisthorchis.","definition_xrefs":["MESH:D009889"],"direct_ancestors":[{"relation_name":"is_a","term_name":"helminthiasis","termid":"MONDO:0004664"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"opisthorchiasis","secondary_identifiers":["MEDGEN:10453","EFO:0007404","DOID:13768","ICD10CM:B66.0","ICD9:121.0","icd11.foundation:1401769984","SCTID:1059007","UMLS:C0029106"],"synonyms":[{"name":"infection by Opisthorchis","type":"exact"},{"name":"infection due to Opisthorchis (felineus)(viverrini)","type":"related"},{"name":"infection due to cat liver fluke","type":"related"}],"termid":"MONDO:0005884","xrefs":{"Monarch":{"xref_id":"0005884"}}}


id: MONDO:0022178
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome 13 disorder","termid":"MONDO:0700020"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 13q-mosaicism","secondary_identifiers":["MEDGEN:443931","UMLS:C2930915","MESH:C535486"],"synonyms":[{"name":"Mosiacism of chromosome 13q","type":"related"}],"termid":"MONDO:0022178","xrefs":{"Monarch":{"xref_id":"0022178"}}}


id: MONDO:0010150
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A squamous cell carcinoma that arises from any of the following anatomic sites: lip and oral cavity, nasal cavity, paranasal sinuses, pharynx, larynx, and salivary glands.","definition_xrefs":["NCIT:C34447"],"direct_ancestors":[{"relation_name":"is_a","term_name":"head and neck carcinoma","termid":"MONDO:0002038"},{"relation_name":"is_a","term_name":"squamous cell carcinoma","termid":"MONDO:0005096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"head and neck squamous cell carcinoma","secondary_identifiers":["DOID:5520","GARD:8503","MESH:C535575","ONCOTREE:HNSC","Orphanet:67037","SCTID:716659002","EFO:0000181","UMLS:C1168401","MedDRA:10060121","MEDGEN:257911","OMIM:275355"],"synonyms":[{"name":"HNSCC","type":"exact"},{"name":"SCCHN","type":"exact"},{"name":"carcinoma of the head and neck","type":"narrow"},{"name":"craniocervical region squamous cell carcinoma","type":"exact"},{"name":"head and neck squamous cell carcinoma","type":"exact"},{"name":"squamous cell carcinoma of head and neck","type":"exact"},{"name":"squamous cell carcinoma of the head and neck","type":"exact"},{"name":"squamous cell carcinoma, head and neck","type":"related"},{"name":"squamous cell carcinoma, head and neck, somatic","type":"exact"},{"name":"squamous cell carcinomas of head and neck","type":"exact"}],"termid":"MONDO:0010150","xrefs":{"Monarch":{"xref_id":"0010150"}}}


id: PBO:0059472
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MSL complex subunit 2","termid":"PBO:0059472"}


id: PBO:0051436
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin lambda variable 3-19","termid":"PBO:0051436"}


id: MOD:01664
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-tryptophan residue to a 7'-hydroxy-L-tryptophan.","definition_xrefs":["PubMed:20223990","RESID:AA0520"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monohydroxylated tryptophan","termid":"MOD:01622"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"7'-hydroxy-L-tryptophan","synonyms":[{"name":"(2S)-2-amino-3-(7-hydroxy-1H-indol-3-yl)propanoic acid","type":"exact"},{"name":"7'-hydroxy-L-tryptophan","type":"exact"},{"name":"7-hydroxy-L-tryptophan","type":"exact"}],"termid":"MOD:01664"}


id: PBO:0046109
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 4E family member 2","termid":"PBO:0046109"}


id: PBO:0005744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wtf element Wtf21","termid":"PBO:0005744"}


id: PBO:0067791
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 93","termid":"PBO:0067791"}


id: PBO:0068960
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 204, pseudogene","termid":"PBO:0068960"}


id: GO:0018718
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 1,2-dihydroxyphenanthrene + UDP-glucose = 2-hydroxy-1-phenanthryl-beta-D-glucopyranoside + UDP.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 1,2-dihydroxy-phenanthrene glycosyltransferase activity (obsolete GO:0018718)","termid":"GO:0018718"}


id: PBO:0059114
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"motile sperm domain containing 3","termid":"PBO:0059114"}


id: MOD:00391
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-threonine residue to O-octanoyl-L-threonine.","definition_xrefs":["Unimod:426#T","PubMed:12716131","RESID:AA0386","PubMed:11546772"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-octanoylated residue","termid":"MOD:00669"},{"relation_name":"is_a","term_name":"O3-acylated L-threonine","termid":"MOD:02004"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:01155"}],"interesting_parent_ids":["MOD:01155"],"is_obsolete":false,"name":"O-octanoyl-L-threonine","synonyms":[{"name":"(2S)-2-amino-3-(octanoyloxy)butanoic acid","type":"exact"},{"name":"L-threonine octanoate ester","type":"exact"},{"name":"LIPID O-octanoyl threonine","type":"exact"},{"name":"O-octanoyl-L-threonine","type":"exact"},{"name":"O-octanoylated L-threonine","type":"exact"},{"name":"O3-octanoyl-L-threonine","type":"exact"},{"name":"OOctThr","type":"exact"},{"name":"Octanoyl","type":"related"},{"name":"octanoyl","type":"related"}],"termid":"MOD:00391"}


id: PBO:0014586
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vitamin H transporter Vht1","termid":"PBO:0014586"}


id: MONDO:0003403
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A classification of testicular cancers that arise in specialized sex cells called germ cells. Nonseminomas include embryonal carcinoma, teratoma, choriocarcinoma, and yolk sac tumor.","definition_xrefs":["NCIT:C5027"],"direct_ancestors":[{"relation_name":"is_a","term_name":"malignant testicular germ cell tumor","termid":"MONDO:0003510"},{"relation_name":"is_a","term_name":"testicular non-seminomatous germ cell tumor","termid":"MONDO:0006447"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"testicular non-seminomatous germ cell cancer","secondary_identifiers":["UMLS:C1334625","DOID:5345","MEDGEN:233162"],"synonyms":[{"name":"malignant non-seminomatous germ cell cancer of testis","type":"exact"},{"name":"malignant non-seminomatous germ cell cancer of the testis","type":"exact"},{"name":"malignant non-seminomatous germ cell neoplasm of testis","type":"exact"},{"name":"malignant non-seminomatous germ cell neoplasm of the testis","type":"exact"},{"name":"malignant non-seminomatous germ cell tumor of testis","type":"exact"},{"name":"malignant non-seminomatous germ cell tumor of the testis","type":"exact"},{"name":"malignant non-seminomatous germ cell tumour of testis","type":"exact"},{"name":"malignant non-seminomatous germ cell tumour of the testis","type":"exact"},{"name":"malignant testicular non-seminomatous germ cell neoplasm","type":"exact"},{"name":"malignant testicular non-seminomatous germ cell tumor","type":"exact"},{"name":"malignant testicular non-seminomatous germ cell tumour","type":"exact"},{"name":"testicular germ cell tumor non-seminomatous, malignant","type":"exact"},{"name":"testicular germ cell tumour non-seminomatous, malignant","type":"exact"},{"name":"testicular non-seminomatous germ cell cancer","type":"exact"},{"name":"testicular non-seminomatous germ cell tumor, malignant","type":"exact"},{"name":"testicular non-seminomatous malignant germ cell neoplasm","type":"exact"}],"termid":"MONDO:0003403","xrefs":{"Monarch":{"xref_id":"0003403"}}}


id: PBO:0004334
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L10a","termid":"PBO:0004334"}


id: MONDO:0800343
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rhegmatogenous retinal detachment, autosomal dominant (obsolete MONDO:0800343)","termid":"MONDO:0800343","xrefs":{"Monarch":{"xref_id":"0800343"}}}


id: GO:0045821
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of glycolysis.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of glycolytic process","termid":"GO:0006110"},{"relation_name":"is_a","term_name":"positive regulation of purine nucleotide catabolic process","termid":"GO:0033123"},{"relation_name":"is_a","term_name":"positive regulation of carbohydrate metabolic process","termid":"GO:0045913"},{"relation_name":"is_a","term_name":"positive regulation of ATP metabolic process","termid":"GO:1903580"},{"relation_name":"positively_regulates","term_name":"glycolytic process","termid":"GO:0006096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"positively_regulates","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0005975"},{"rel_name":"positively_regulates","termid":"GO:0006091"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0055086"},{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"regulates","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0008150","GO:0006091","GO:0055086","GO:0044281","GO:0005975"],"is_obsolete":false,"name":"positive regulation of glycolytic process","synonyms":[{"name":"activation of glycolysis","type":"narrow"},{"name":"stimulation of glycolysis","type":"narrow"},{"name":"up regulation of glycolysis","type":"exact"},{"name":"up-regulation of glycolysis","type":"exact"},{"name":"upregulation of glycolysis","type":"exact"}],"termid":"GO:0045821"}


id: GO:0006707
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cholesterol metabolic process","termid":"GO:0008203"},{"relation_name":"is_a","term_name":"sterol catabolic process","termid":"GO:0016127"},{"relation_name":"is_a","term_name":"alcohol catabolic process","termid":"GO:0046164"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0006629","GO:0044281"],"is_obsolete":false,"name":"cholesterol catabolic process","synonyms":[{"name":"cholesterol breakdown","type":"exact"},{"name":"cholesterol catabolism","type":"exact"},{"name":"cholesterol degradation","type":"exact"}],"termid":"GO:0006707"}


id: GO:0070821
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding a tertiary granule.","definition_xrefs":["GOC:BHF","GOC:mah","PMID:12070036","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secretory granule membrane","termid":"GO:0030667"},{"relation_name":"part_of","term_name":"tertiary granule","termid":"GO:0070820"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0031410"],"is_obsolete":false,"name":"tertiary granule membrane","termid":"GO:0070821"}


id: PBO:0063477
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein disulfide isomerase family A member 5","termid":"PBO:0063477"}


id: MONDO:0100429
data:
  {"annotated_genes":["SJAG_03363"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87396],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013995"}]},"cv_name":"mondo","definition":"A cholestatic disorder characterized by (i) pruritus with onset in the second or third trimester of pregnancy, (ii) elevated serum aminotransferases and bile acid levels, and (iii) spontaneous relief of signs and symptoms within two to three weeks after delivery.","definition_xrefs":["Orphanet:69665"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intrahepatic cholestasis","termid":"MONDO:0019072"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03363":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0002515","MONDO:0004335"],"is_obsolete":false,"name":"intrahepatic cholestasis of pregnancy","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:82788","icd11.foundation:1576251337","UMLS:C0268318","GARD:9804","DOID:0070227","MESH:C535932"],"synonyms":[{"name":"ICP","type":"exact"},{"name":"RICP","type":"related"},{"name":"cholestasis, intrahepatic of pregnancy","type":"related"},{"name":"familial intrahepatic cholestasis of pregnancy","type":"related"},{"name":"familial recurrent intrahepatic cholestasis of pregnancy","type":"related"},{"name":"gravidic intrahepatic cholestasis","type":"exact"},{"name":"intrahepatic cholestasis of pregnancy","type":"exact"},{"name":"pregnancy related cholestasis","type":"exact"},{"name":"pregnancy-related cholestasis","type":"exact"},{"name":"recurrent intrahepatic cholestasis of pregnancy","type":"exact"}],"termid":"MONDO:0100429","terms_by_termid":{"MONDO:0013995":null},"xrefs":{"Monarch":{"xref_id":"0100429"}}}


id: GO:1901489
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Negative regulation of transcription factor catabolism in response to decreased oxygen levels, which results in positive regulation of the SREBP signaling pathway.","definition_xrefs":["GOC:TermGenie","GOC:vw","PMID:22833559"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of SREBP signaling pathway by negative regulation of transcription factor catabolic process in response to decreased oxygen levels (obsolete GO:1901489)","synonyms":[{"name":"positive regulation of SREBP signaling by inhibition of SREBP degradation in response to decreased oxygen levels","type":"exact"},{"name":"positive regulation of SREBP signaling by negative regulation of transcription factor catabolism at low oxygen levels","type":"exact"},{"name":"positive regulation of SREBP signaling pathway by negative regulation of SREBP degradation, in response to decreased oxygen","type":"narrow"},{"name":"positive regulation of SREBP-mediated signaling pathway in absence of oxygen by negative regulation of transcription factor catabolic process","type":"related"},{"name":"positive regulation of SREBP-mediated signaling pathway in response to decreased oxygen levels by negative regulation of transcription factor catabolic process","type":"exact"}],"termid":"GO:1901489"}


id: PBO:0084279
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Integral membrane protein of the endoplasmic reticulum; required for normal content of cell wall beta-1,6-glucan","termid":"PBO:0084279"}


id: GO:0034340
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a type I interferon stimulus. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families.","definition_xrefs":["PMID:15546383","PMID:16681834","ISBN:0126896631","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to cytokine","termid":"GO:0034097"},{"relation_name":"part_of","term_name":"innate immune response","termid":"GO:0045087"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to type I interferon","synonyms":[{"name":"response to type I IFN","type":"exact"}],"termid":"GO:0034340"}


id: PBO:0003363
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongator subunit Iki3 (predicted)","termid":"PBO:0003363"}


id: PBO:0076129
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUB1 regulator of transcription","termid":"PBO:0076129"}


id: PBO:0111531
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 228","termid":"PBO:0111531"}


id: MONDO:0001406
data:
  {"annotated_genes":["SJAG_01111","SJAG_03163","SJAG_03920","SJAG_02398","SJAG_01895","SJAG_00260","SJAG_04213","SJAG_01671"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86206],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008192"},{"annotations":[87381],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011121"},{"annotations":[87291],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011544"},{"annotations":[85995],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007273"},{"annotations":[86203],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013602"},{"annotations":[87527],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032771"},{"annotations":[87670,87671],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0024517"}]},"cv_name":"mondo","definition":"A benign or malignant neoplasm arising from a peripheral nerve or the perineural sheaths.","definition_xrefs":["NCIT:C3321"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peripheral nervous system disorder","termid":"MONDO:0003620"},{"relation_name":"is_a","term_name":"nervous system neoplasm","termid":"MONDO:0021248"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00260":null,"SJAG_01111":null,"SJAG_01671":null,"SJAG_01895":null,"SJAG_02398":null,"SJAG_03163":null,"SJAG_03920":null,"SJAG_04213":null},"genotype_count":0,"is_obsolete":false,"name":"peripheral nervous system neoplasm","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:D010524","DOID:1192","EFO:0002431","MEDGEN:45817","SCTID:126980002","ICD9:239.2","ONCOTREE:PNS","UMLS:C0031118"],"synonyms":[{"name":"CNS-excluded nervous sys. cancer","type":"narrow"},{"name":"PNS neoplasm","type":"exact"},{"name":"PNS neoplasms","type":"exact"},{"name":"PNS tumor","type":"exact"},{"name":"PNS tumour","type":"exact"},{"name":"neoplasm of PNS","type":"exact"},{"name":"neoplasm of peripheral nerve","type":"exact"},{"name":"neoplasm of peripheral nervous system","type":"exact"},{"name":"neoplasm of the PNS","type":"exact"},{"name":"neoplasm of the peripheral nerve","type":"exact"},{"name":"neoplasm of the peripheral nervous system","type":"exact"},{"name":"neoplasms, PNS","type":"exact"},{"name":"neoplasms, peripheral nervous system","type":"exact"},{"name":"nerve sheath neoplasm","type":"narrow"},{"name":"nerve sheath tumors","type":"narrow"},{"name":"nerve sheath tumours","type":"narrow"},{"name":"peripheral nerve neoplasm","type":"exact"},{"name":"peripheral nerve tumor","type":"exact"},{"name":"peripheral nerve tumour","type":"exact"},{"name":"peripheral nervous system neoplasm","type":"exact"},{"name":"peripheral nervous system neoplasm (disease)","type":"exact"},{"name":"peripheral nervous system tumor","type":"exact"},{"name":"peripheral nervous system tumour","type":"exact"},{"name":"tumor of PNS","type":"exact"},{"name":"tumor of peripheral nerve","type":"exact"},{"name":"tumor of peripheral nervous system","type":"exact"},{"name":"tumor of the PNS","type":"exact"},{"name":"tumor of the peripheral nerve","type":"exact"},{"name":"tumor of the peripheral nervous system","type":"exact"},{"name":"tumour of PNS","type":"exact"},{"name":"tumour of peripheral nerve","type":"exact"},{"name":"tumour of peripheral nervous system","type":"exact"},{"name":"tumour of the PNS","type":"exact"},{"name":"tumour of the peripheral nerve","type":"exact"},{"name":"tumour of the peripheral nervous system","type":"exact"}],"termid":"MONDO:0001406","terms_by_termid":{"MONDO:0007273":null,"MONDO:0008192":null,"MONDO:0011121":null,"MONDO:0011544":null,"MONDO:0013602":null,"MONDO:0024517":null,"MONDO:0032771":null},"xrefs":{"Monarch":{"xref_id":"0001406"}}}


id: GO:0005576
data:
  {"annotated_genes":["SJAG_02580","SJAG_00781","SJAG_04327","SJAG_05001","SJAG_04301","SJAG_02582","SJAG_04067","SJAG_03295","SJAG_00620","SJAG_00981","SJAG_04073","SJAG_02959","SJAG_02949","SJAG_01970","SJAG_01171","SJAG_02093","SJAG_00975","SJAG_03444","SJAG_02091","SJAG_00667","SJAG_01835","SJAG_02192","SJAG_04864","SJAG_02131","SJAG_02478","SJAG_03824"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[60670,71044,77266,78182,78549,87795,88552,89045,89447,90902,92245,100509,100711,101176,101958,101959,102812,107066,108149,113724,113725,114092,114093,115975,116015,116511],"is_not":false,"summary":null,"term":"GO:0005576"}]},"cv_name":"cellular_component","definition":"The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"}],"gene_count":26,"genes_by_uniquename":{"SJAG_00620":null,"SJAG_00667":null,"SJAG_00781":null,"SJAG_00975":null,"SJAG_00981":null,"SJAG_01171":null,"SJAG_01835":null,"SJAG_01970":null,"SJAG_02091":null,"SJAG_02093":null,"SJAG_02131":null,"SJAG_02192":null,"SJAG_02478":null,"SJAG_02580":null,"SJAG_02582":null,"SJAG_02949":null,"SJAG_02959":null,"SJAG_03295":null,"SJAG_03444":null,"SJAG_03824":null,"SJAG_04067":null,"SJAG_04073":null,"SJAG_04301":null,"SJAG_04327":null,"SJAG_04864":null,"SJAG_05001":null},"genotype_count":0,"in_subsets":["cc_goslim_japonicus"],"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"extracellular region","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Wikipedia:Extracellular"],"synonyms":[{"name":"extracellular","type":"exact"}],"termid":"GO:0005576","terms_by_termid":{"GO:0005576":null}}


id: MONDO:1010440
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Cardiomyopathy that occurs in hedgehogs.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiomyopathy, non-human animal","termid":"MONDO:1010010"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cardiomyopathy, hedgehogs","secondary_identifiers":["OMIA:000160-9363"],"termid":"MONDO:1010440","xrefs":{"Monarch":{"xref_id":"1010440"}}}


id: PBO:0076104
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syntaxin 8 pseudogene 1","termid":"PBO:0076104"}


id: PBO:0028460
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_galactose-specific_flocculation","termid":"PBO:0028460"}


id: GO:0003121
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A vasodilation process resulting from secretion of epinephrine into the bloodstream or released by nerve endings.","definition_xrefs":["GOC:mtg_cardio"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vasodilation","termid":"GO:0042311"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epinephrine-mediated vasodilation","secondary_identifiers":["GO:0003123","GO:0003124"],"synonyms":[{"name":"regulation of vasodilation by adrenaline","type":"related"},{"name":"regulation of vasodilation by circulating adrenaline","type":"related"},{"name":"regulation of vasodilation by circulating epinephrine","type":"related"},{"name":"regulation of vasodilation by epinephrine","type":"related"},{"name":"regulation of vasodilation by neuronal adrenaline","type":"related"},{"name":"regulation of vasodilation by neuronal epinephrine","type":"related"}],"termid":"GO:0003121"}


id: PBO:0061897
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"opsin 3","termid":"PBO:0061897"}


id: PBO:0030181
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_vegetative_cell_population","termid":"PBO:0030181"}


id: GO:0015292
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transport of a single molecular species across a membrane; transport is independent of the movement of any other molecular species.","definition_xrefs":["PMID:10839820","GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secondary active transmembrane transporter activity","termid":"GO:0015291"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"uniporter activity","synonyms":[{"name":"facilitated diffusion carrier","type":"exact"},{"name":"single-species transporter activity","type":"exact"},{"name":"uniport","type":"related"}],"termid":"GO:0015292"}


id: GO:1905567
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport.","definition_xrefs":["GOC:BHF","GOC:nc","PMID:22848640","GOC:TermGenie","GO_REF:0000058"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport (obsolete GO:1905567)","synonyms":[{"name":"activation of receptor-mediated endocytosis of LDL","type":"narrow"},{"name":"activation of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport","type":"related"},{"name":"activation of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport","type":"narrow"},{"name":"positive regulation of receptor-mediated endocytosis of LDL","type":"exact"},{"name":"positive regulation of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport","type":"related"},{"name":"up regulation of receptor-mediated endocytosis of LDL","type":"exact"},{"name":"up regulation of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport","type":"related"},{"name":"up regulation of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport","type":"exact"},{"name":"up-regulation of receptor-mediated endocytosis of LDL","type":"exact"},{"name":"up-regulation of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport","type":"related"},{"name":"up-regulation of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport","type":"exact"},{"name":"upregulation of receptor-mediated endocytosis of LDL","type":"exact"},{"name":"upregulation of receptor-mediated endocytosis of low-density lipoprotein involved in cholesterol transport","type":"related"},{"name":"upregulation of receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport","type":"exact"}],"termid":"GO:1905567"}


id: PBO:0050879
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IDI1 pseudogene 2","termid":"PBO:0050879"}


id: GO:0033261
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A cell cycle process that modulates the rate or extent of the progression through the S phase of the cell cycle.","definition_xrefs":["GOC:tb","GOC:dph","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of S phase (obsolete GO:0033261)","synonyms":[{"name":"regulation of S phase","type":"exact"},{"name":"regulation of S-phase","type":"exact"},{"name":"regulation of progression through S phase","type":"exact"}],"termid":"GO:0033261"}


id: GO:0031664
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of signaling in response to detection of lipopolysaccharide.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to biotic stimulus","termid":"GO:0002831"},{"relation_name":"is_a","term_name":"regulation of signal transduction","termid":"GO:0009966"},{"relation_name":"is_a","term_name":"regulation of response to external stimulus","termid":"GO:0032101"},{"relation_name":"regulates","term_name":"lipopolysaccharide-mediated signaling pathway","termid":"GO:0031663"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of lipopolysaccharide-mediated signaling pathway","synonyms":[{"name":"regulation of LPS-mediated signaling pathway","type":"exact"},{"name":"regulation of lipopolysaccharide-mediated signalling pathway","type":"exact"}],"termid":"GO:0031664"}


id: GO:0035533
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of production of chemokine (C-C motif) ligand 6 (CCL6).","definition_xrefs":["GOC:bf","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of chemokine production","termid":"GO:0032722"},{"relation_name":"is_a","term_name":"regulation of chemokine (C-C motif) ligand 6 production","termid":"GO:0035531"},{"relation_name":"positively_regulates","term_name":"chemokine (C-C motif) ligand 6 production","termid":"GO:0035530"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of chemokine (C-C motif) ligand 6 production","secondary_identifiers":["GO:0035537"],"synonyms":[{"name":"positive regulation of CCL6 production","type":"exact"},{"name":"positive regulation of chemokine (C-C motif) ligand 6 secretion","type":"narrow"}],"termid":"GO:0035533"}


id: GO:1900521
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of response to amylopectin.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to stimulus","termid":"GO:0048583"},{"relation_name":"regulates","term_name":"response to amylopectin","termid":"GO:0044591"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of response to amylopectin","termid":"GO:1900521"}


id: GO:0015015
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification, often by sulfation, of sugars incorporated into heparan sulfate after polymerization.","definition_xrefs":["ISBN:0815316194"],"gene_count":0,"genotype_count":0,"name":"obsolete heparan sulfate proteoglycan biosynthetic process, enzymatic modification (obsolete GO:0015015)","synonyms":[{"name":"heparan sulfate proteoglycan anabolism, enzymatic modification","type":"exact"},{"name":"heparan sulfate proteoglycan formation, enzymatic modification","type":"exact"},{"name":"heparan sulfate proteoglycan synthesis, enzymatic modification","type":"exact"},{"name":"heparan sulphate proteoglycan biosynthesis, enzymatic modification","type":"exact"},{"name":"heparan sulphate proteoglycan biosynthetic process, enzymatic modification","type":"exact"},{"name":"heparin proteoglycan biosynthetic process, enzymatic modification","type":"related"}],"termid":"GO:0015015"}


id: PBO:0043515
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"contactin associated protein family member 4","termid":"PBO:0043515"}


id: MONDO:0014467
data:
  {"annotated_genes":["SJAG_01190"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87237],"is_not":false,"summary":null,"term":"MONDO:0014467"}]},"cv_name":"mondo","definition":"Any Charcot-Marie-Tooth disease in which the cause of the disease is a mutation in the COX6A1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial oxidative phosphorylation disorder","termid":"MONDO:0016387"},{"relation_name":"is_a","term_name":"autosomal recessive intermediate Charcot-Marie-Tooth disease","termid":"MONDO:0017058"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01190":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"},{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004069"}],"interesting_parent_ids":["MONDO:0005244","MONDO:0004069","MONDO:0005066","MONDO:0006025"],"is_obsolete":false,"name":"Charcot-Marie-Tooth disease recessive intermediate D","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5569027","GARD:17723","DOID:0110203","Orphanet:435998","MEDGEN:1800450","OMIM:616039"],"synonyms":[{"name":"CMTRID","type":"exact"},{"name":"COX6A1 Charcot-Marie-Tooth disease","type":"exact"},{"name":"Charcot-Marie-Tooth disease caused by mutation in COX6A1","type":"exact"},{"name":"Charcot-Marie-Tooth disease recessive intermediate type D","type":"exact"},{"name":"Charcot-Marie-Tooth disease, recessive Intermediate type D","type":"exact"},{"name":"Charcot-Marie-Tooth disease, recessive intermediate D","type":"related"},{"name":"RI-CMT type D","type":"exact"},{"name":"autosomal recessive intermediate Charcot-Marie-Tooth disease type D","type":"exact"}],"termid":"MONDO:0014467","terms_by_termid":{"MONDO:0014467":null},"xrefs":{"Monarch":{"xref_id":"0014467"}}}


id: PBO:0038555
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"abhydrolase domain containing 17B, depalmitoylase","termid":"PBO:0038555"}


id: PBO:0091030
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 snoRNP-associated protein Utp10","termid":"PBO:0091030"}


id: PATO:0002406
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"Easily reduced to powder or easily fragmentable or crumbly.","definition_xrefs":["PATOC:MPATH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"friability","termid":"PATO:0002405"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"friable","termid":"PATO:0002406"}


id: PBO:0073453
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SFT2 domain containing 2","termid":"PBO:0073453"}


id: MONDO:0020113
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"acquired aplastic anemia","termid":"MONDO:0015610"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0002280"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0002280"],"is_obsolete":false,"name":"primary acquired red cell aplasia","secondary_identifiers":["GARD:19465","MedDRA:10038184","Orphanet:98421"],"synonyms":[{"name":"primary autoimmune red cell aplasia","type":"exact"},{"name":"red cell aplasia","type":"broad"}],"termid":"MONDO:0020113","xrefs":{"Monarch":{"xref_id":"0020113"}}}


id: PBO:0085982
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; relocalizes from vacuole to cytoplasm upon DNA replication stress","termid":"PBO:0085982"}


id: PBO:0050803
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HtrA serine peptidase 3","termid":"PBO:0050803"}


id: PBO:0052305
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KIAA0087 lncRNA","termid":"PBO:0052305"}


id: PBO:0116741
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLIRP overlapping transcript 1","termid":"PBO:0116741"}


id: PBO:0071162
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L23a pseudogene 1","termid":"PBO:0071162"}


id: PBO:0072285
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S24 pseudogene 3","termid":"PBO:0072285"}


id: PBO:0056752
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"METTL5 pseudogene 3","termid":"PBO:0056752"}


id: GO:0010988
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of low-density lipoprotein particle clearance. Low-density lipoprotein particle clearance is the process in which a low-density lipoprotein particle is removed from the blood via receptor-mediated endocytosis and its constituent parts degraded.","definition_xrefs":["GOC:dph","GOC:tb","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of lipoprotein particle clearance","termid":"GO:0010984"},{"relation_name":"regulates","term_name":"low-density lipoprotein particle clearance","termid":"GO:0034383"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of low-density lipoprotein particle clearance","termid":"GO:0010988"}


id: PBO:0051195
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 3/OR16-13 (non-functional)","termid":"PBO:0051195"}


id: PBO:0081270
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 34","termid":"PBO:0081270"}


id: MOD:00164
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-asparagine residue to O-(N-acetylaminogalactosyl)-L-threonine.","definition_xrefs":["RESID:AA0155","PubMed:8948436","PubMed:3086323","PubMed:1997327","PubMed:9092502","PubMed:16005634"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-acetylaminogalactosylated residue","termid":"MOD:00563"},{"relation_name":"is_a","term_name":"O-(N-acetylamino)hexosyl-L-threonine","termid":"MOD:01676"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"O-(N-acetylamino)galactosyl-L-threonine","synonyms":[{"name":"(2S,3R)-2-amino-3-(2-acetamido-2-deoxy-alpha-D-galactopyranosyloxy)butanoic acid","type":"exact"},{"name":"CARBOHYD O-linked (GalNAc) threonine","type":"exact"},{"name":"CARBOHYD O-linked (HexNAc)","type":"exact"},{"name":"HexNAc","type":"related"},{"name":"O-(N-acetylamino)galactosyl-L-threonine","type":"exact"},{"name":"O3-(N-acetylgalactosaminyl)threonine","type":"exact"},{"name":"OGalNAcThr","type":"exact"},{"name":"mucin type O-glycosylthreonine","type":"exact"}],"termid":"MOD:00164"}


id: PBO:0073612
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SIAH2 antisense RNA 1","termid":"PBO:0073612"}


id: GO:0061459
data:
  {"annotated_genes":["SJAG_03400","SJAG_04637","SJAG_03256"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[79480,97712,100725],"is_not":false,"summary":null,"term":"GO:0061459"}]},"cv_name":"molecular_function","definition":"Enables the transfer of L-arginine from one side of a membrane to the other.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic cation transmembrane transporter activity","termid":"GO:0015101"},{"relation_name":"is_a","term_name":"basic amino acid transmembrane transporter activity","termid":"GO:0015174"},{"relation_name":"is_a","term_name":"L-amino acid transmembrane transporter activity","termid":"GO:0015179"}],"gene_count":3,"genes_by_uniquename":{"SJAG_03256":null,"SJAG_03400":null,"SJAG_04637":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"L-arginine transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0015181","GO:0005288","GO:0015598","MetaCyc:RXN66-448","GO:0102022"],"synonyms":[{"name":"ATP-dependent L-arginine transmembrane transporter activity","type":"narrow"},{"name":"ATPase-coupled L-arginine transmembrane transporter activity","type":"narrow"},{"name":"L-arginine transporter activity","type":"exact"},{"name":"L-arginine-importing ATPase activity","type":"narrow"},{"name":"arginine permease activity","type":"broad"},{"name":"arginine porter activity","type":"narrow"},{"name":"arginine transmembrane transporter activity","type":"exact"},{"name":"arginine-importing ATPase activity","type":"narrow"},{"name":"histidine/arginine/lysine/ornithine porter activity","type":"narrow"}],"termid":"GO:0061459","terms_by_termid":{"GO:0061459":null}}


id: PBO:0066449
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"REXO1 like 1, pseudogene","termid":"PBO:0066449"}


id: MONDO:0012957
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"multiple sclerosis","termid":"MONDO:0005301"},{"relation_name":"is_a","term_name":"multiple sclerosis, susceptibility to","termid":"MONDO:0007462"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"multiple sclerosis, susceptibility to, 3","secondary_identifiers":["UMLS:C2675477","OMIM:612595","MEDGEN:390807"],"synonyms":[{"name":"MS3","type":"exact"},{"name":"multiple sclerosis, susceptibility to, 3","type":"exact"}],"termid":"MONDO:0012957","xrefs":{"Monarch":{"xref_id":"0012957"}}}


id: GO:0019091
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a lrRNA, large subunit ribosomal ribonucleic acid, is transported from the mitochondrial matrix into the cytosol.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial rRNA export from mitochondrion","termid":"GO:0019090"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"mitochondrial lrRNA export from mitochondrion","synonyms":[{"name":"export of mitochondrial lrRNA","type":"broad"},{"name":"mitochondrial lrRNA export","type":"exact"},{"name":"mitochondrial lrRNA export from mitochondria","type":"exact"},{"name":"mitochondrial lrRNA export out of mitochondrion","type":"exact"},{"name":"mitochondrial lrRNA transport from mitochondrion","type":"exact"},{"name":"mitochondrial lrRNA, mitochondrial export","type":"exact"}],"termid":"GO:0019091"}


id: PBO:0067605
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 771, pseudogene","termid":"PBO:0067605"}


id: FYPO:0000960
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing ethanol.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0002057","FYPO:0002058","FYPO:0000139","FYPO:0000257","FYPO:0000003","FYPO:0002060"],"is_obsolete":false,"name":"normal growth on ethanol","synonyms":[{"name":"normal cell population growth in presence of ethanol","type":"exact"},{"name":"normal cell population growth on ethanol","type":"exact"},{"name":"normal cell population growth on to ethyl alcohol","type":"exact"},{"name":"normal cellular response to ethanol","type":"related"},{"name":"normal vegetative cell population growth on ethanol","type":"exact"}],"termid":"FYPO:0000960"}


id: GO:0102882
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (2E,6E)-farnesyl diphosphate = beta-acoradiene + diphosphate.","definition_xrefs":["RHEA:68520"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on phosphates","termid":"GO:0016838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829"],"is_obsolete":false,"name":"beta-acoradiene synthase activity","secondary_identifiers":["MetaCyc:RXN-8423"],"termid":"GO:0102882"}


id: PBO:0044651
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynactin subunit 2","termid":"PBO:0044651"}


id: PBO:0087296
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Single-stranded DNA endonuclease (with Rad10p); cleaves single-stranded DNA during nucleotide excision repair and double-strand break repair; subunit of Nucleotide Excision Repair Factor 1 (NEF1); homolog of human XPF protein","termid":"PBO:0087296"}


id: MONDO:1010072
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Factor X deficiency that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hematologic disorder, non-human animal","termid":"MONDO:1011319"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"factor X deficiency, non-human animal","secondary_identifiers":["OMIA:000362"],"termid":"MONDO:1010072","xrefs":{"Monarch":{"xref_id":"1010072"}}}


id: GO:0106072
data:
  {"annotated_genes":["SJAG_01245","SJAG_02311","SJAG_00266","SJAG_02481","SJAG_02426"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[108346,116772,100804,93111,92447],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0110034"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of an adenylate cyclase-activating G protein-coupled receptor signaling pathway.","definition_xrefs":["GOC:hjd","PMID:19246489"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of G protein-coupled receptor signaling pathway","termid":"GO:0045744"},{"relation_name":"is_a","term_name":"regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway","termid":"GO:0106070"},{"relation_name":"negatively_regulates","term_name":"adenylate cyclase-activating G protein-coupled receptor signaling pathway","termid":"GO:0007189"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00266":null,"SJAG_01245":null,"SJAG_02311":null,"SJAG_02426":null,"SJAG_02481":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"negative regulation of adenylate cyclase-activating G-protein coupled receptor signaling pathway","type":"exact"}],"termid":"GO:0106072","terms_by_termid":{"GO:0110034":null}}


id: GO:0072197
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the ureter are generated and organized. The ureter is a muscular tube that transports urine from the kidney to the urinary bladder.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"animal organ morphogenesis","termid":"GO:0009887"},{"relation_name":"is_a","term_name":"tube morphogenesis","termid":"GO:0035239"},{"relation_name":"part_of","term_name":"ureter development","termid":"GO:0072189"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ureter morphogenesis","termid":"GO:0072197"}


id: PBO:0015702
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA repair ligase Lig4","termid":"PBO:0015702"}


id: MONDO:0026727
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Shukla-Vernon syndrome","secondary_identifiers":["GARD:18511","MEDGEN:1674076","OMIM:301029","DOID:0111841","UMLS:C5193146"],"synonyms":[{"name":"SHUKLA-VERNON SYNDROME","type":"related"},{"name":"SHUVER","type":"related"},{"name":"Shukla-Vernon syndrome, X-linked recessive","type":"exact"}],"termid":"MONDO:0026727","xrefs":{"Monarch":{"xref_id":"0026727"}}}


id: GO:0003294
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The reorganization or renovation of heart tissue that contributes to the maturation of the connection between an atrium and a ventricle.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tissue remodeling","termid":"GO:0048771"},{"relation_name":"part_of","term_name":"heart morphogenesis","termid":"GO:0003007"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"atrial ventricular junction remodeling","synonyms":[{"name":"atrial ventricular junction remodelling","type":"exact"},{"name":"atrio-ventricular junction remodeling","type":"related"},{"name":"atrioventricular junction remodeling","type":"exact"}],"termid":"GO:0003294"}


id: MONDO:0025381
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A group of transmissible viral diseases of chickens and turkeys. Liver tumors are found in most forms, but tumors can be found elsewhere.","definition_xrefs":["MESH:D001353"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bird disease","termid":"MONDO:0024905"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"avian leukosis","synonyms":[{"name":"Avian Leukoses","type":"related"},{"name":"leukoses, Avian","type":"related"},{"name":"leukosis, Avian","type":"related"},{"name":"lymphoid leukosis","type":"exact"}],"termid":"MONDO:0025381","xrefs":{"Monarch":{"xref_id":"0025381"}}}


id: GO:0102758
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a very-long-chain 2,3-saturated fatty acyl-CoA + NADP+ = a very-long-chain (2E)-enoyl-CoA + H+ + NADPH. This reaction is the fourth (reduction) step of the four-step fatty acid elongation cycle in the endoplasmic reticulum that extends fatty acids of C-16 or longer with an additional 2-C unit.","definition_xrefs":["RHEA:14473","PMID:19763486","PMID:16564093"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","termid":"GO:0016628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"very-long-chain enoyl-CoA reductase activity","secondary_identifiers":["MetaCyc:RXN-7711","EC:1.3.1.93"],"termid":"GO:0102758"}


id: PBO:0028971
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-excess_Golgi_cisternae_present","termid":"PBO:0028971"}


id: GO:1902642
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process.","definition_xrefs":["GOC:di","PMID:22562153","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of lipid catabolic process","termid":"GO:0050995"},{"relation_name":"is_a","term_name":"regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process","termid":"GO:1902641"},{"relation_name":"is_a","term_name":"negative regulation of phospholipid metabolic process","termid":"GO:1903726"},{"relation_name":"negatively_regulates","term_name":"1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process","termid":"GO:1902634"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"negatively_regulates","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"negative regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process","synonyms":[{"name":"down regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate breakdown","type":"exact"},{"name":"down regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process","type":"exact"},{"name":"down regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolism","type":"exact"},{"name":"down regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate degradation","type":"exact"},{"name":"down-regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate breakdown","type":"exact"},{"name":"down-regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process","type":"exact"},{"name":"down-regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolism","type":"exact"},{"name":"down-regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate degradation","type":"exact"},{"name":"downregulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate breakdown","type":"exact"},{"name":"downregulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process","type":"exact"},{"name":"downregulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolism","type":"exact"},{"name":"downregulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate degradation","type":"exact"},{"name":"inhibition of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate breakdown","type":"narrow"},{"name":"inhibition of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process","type":"narrow"},{"name":"inhibition of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolism","type":"narrow"},{"name":"inhibition of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate degradation","type":"narrow"},{"name":"negative regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate breakdown","type":"exact"},{"name":"negative regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolism","type":"exact"},{"name":"negative regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate degradation","type":"exact"}],"termid":"GO:1902642"}


id: FYPO:0004890
data:
  {"alleles_by_uniquename":{"SJAG_01834:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01834","name":"pom152delta","uniquename":"SJAG_01834:allele-1"},"SJAG_03449:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03449","name":"man1delta","uniquename":"SJAG_03449:allele-1"},"SJAG_03449:allele-2":{"allele_type":"partial_amino_acid_deletion","description":"man1DHEH","gene_uniquename":"SJAG_03449","name":"Man1DHEH","uniquename":"SJAG_03449:allele-2"},"SJAG_03449:allele-3":{"allele_type":"amino_acid_insertion_and_deletion","description":"man1-1-488","gene_uniquename":"SJAG_03449","name":"man1-1-488","uniquename":"SJAG_03449:allele-3"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[119758,119759,119760,119762],"is_not":false,"summary":null,"term":"FYPO:0004890"}]},"cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the distance between one or more telomeres and the nuclear envelope is greater than normal during mitosis.","definition_xrefs":["PomBase:mah","PMID:19948484"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal telomere-nuclear envelope distance during vegetative growth","termid":"FYPO:0004790"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01834":null,"SJAG_03449":null},"genotype_count":4,"genotypes_by_uniquename":{"Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type":{"display_name":"Man1DHEH(man1DHEH)","display_uniquename":"Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-2","expression":"Not assayed or wild type"}]}]},"man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type":{"display_name":"man1-1-488(aa)","display_uniquename":"man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-3","expression":"Not assayed or wild type"}]}]},"man1delta":{"display_name":"man1delta","display_uniquename":"man1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03449:allele-1","expression":"Null"}]}]},"pom152delta":{"display_name":"pom152delta","display_uniquename":"pom152delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01834:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000138","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"increased telomere-nuclear envelope distance during mitosis","references_by_uniquename":{"PMID:24184107":null},"single_locus_annotated_genes":["SJAG_03449","SJAG_01834"],"single_locus_genotype_uniquenames":["man1delta","man1-1-488-man1-1-488-amino_acid_insertion_and_deletion-expression-not_assayed_or_wild_type","pom152delta","Man1DHEH-man1DHEH-partial_amino_acid_deletion-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"increased distance between telomeres and nuclear envelope during mitosis","type":"exact"},{"name":"increased telomere-nuclear envelope distance during mitosis during vegetative growth","type":"exact"},{"name":"increased telomere-nuclear envelope distance during mitotic nuclear division","type":"exact"}],"termid":"FYPO:0004890","terms_by_termid":{"FYPO:0004890":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: PR:P22774-1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A heat shock 70 kDa protein, mitochondrial (Schizosaccharomyces pombe 972h-) that is a translation product of some mRNA giving rise to a protein with the amino acid sequence represented by UniProtKB:P22774-1.","definition_xrefs":["UniProtKB:P22774","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heat shock 70 kDa protein, mitochondrial (Schizosaccharomyces pombe 972h-)","termid":"PR:P22774"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock 70 kDa protein, mitochondrial isoform Long (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1002.01","secondary_identifiers":["UniProtKB:P22774-1"],"synonyms":[{"name":"Spom972h-HSPA9/iso:Long","type":"exact"},{"name":"heat shock 70 kDa protein, mitochondrial isoform Mitochondrial (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P22774-1"}


id: PBO:0001956
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptionally regulates agn1","termid":"PBO:0001956"}


id: PBO:0051223
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 7-81 (non-functional)","termid":"PBO:0051223"}


id: FYPO:0002108
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a cell is viable, and tapers at one end to a diameter smaller than the other. The cell diameter at the narrow end is smaller than that of a wild-type cell.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"tapered cell","termid":"FYPO:0000014"},{"relation_name":"has_part","term_name":"viable cell","termid":"FYPO:0000124"},{"relation_name":"is_a","term_name":"viable cell","termid":"FYPO:0000124"},{"relation_name":"is_a","term_name":"tapered vegetative cell","termid":"FYPO:0001119"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000005","FYPO:0001320","FYPO:0000004","FYPO:0000002"],"is_obsolete":false,"name":"viable tapered cell","synonyms":[{"name":"viable bottle-shaped cell","type":"exact"},{"name":"viable bottle/skittle cell","type":"exact"},{"name":"viable skittle-shaped cell","type":"exact"}],"termid":"FYPO:0002108"}


id: PBO:0035901
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H3-K56_acetylation_at_centromere_outer_repeat_during_vegetative_growth","termid":"PBO:0035901"}


id: PBO:0080087
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 48","termid":"PBO:0080087"}


id: PBO:0050888
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-L-iduronidase","termid":"PBO:0050888"}


id: GO:0090565
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein S-phosphocysteine + mannitol(out) = protein cysteine + mannitol phosphate(in). This differs from primary and secondary active transport in that the solute is modified during transport.","definition_xrefs":["GOC:am"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-phosphocysteine-sugar phosphotransferase activity","termid":"GO:0090563"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0016740","GO:0022857","GO:0003824"],"is_obsolete":false,"name":"protein-phosphocysteine-mannitol phosphotransferase system transporter activity","termid":"GO:0090565"}


id: PBO:0042984
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CHD9 neighbor","termid":"PBO:0042984"}


id: PBO:0017432
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-temporally_related_to","termid":"PBO:0017432"}


id: PBO:0003971
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rab Escort Protein","termid":"PBO:0003971"}


id: PBO:0029564
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_1,3-beta-D-glucan_synthase_activity","termid":"PBO:0029564"}


id: PR:Q10407
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mkh1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10407"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAP kinase kinase kinase mkh1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1F3.02c","synonyms":[{"name":"Spom972h-mkh1","type":"exact"}],"termid":"PR:Q10407"}


id: PBO:0085881
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; interacts with both the Reg1p/Glc7p phosphatase and the Snf1p kinase; forms cytoplasmic foci upon DNA replication stress","termid":"PBO:0085881"}


id: GO:1905683
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The disaggregation of a peroxisome into its constituent components.","definition_xrefs":["GOC:autophagy","GOC:pr","GOC:TermGenie","GO_REF:0000079"],"gene_count":0,"genotype_count":0,"name":"obsolete peroxisome disassembly (obsolete GO:1905683)","termid":"GO:1905683"}


id: PBO:0055737
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leiomodin 3","termid":"PBO:0055737"}


id: PBO:0065530
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"patched domain containing 3 pseudogene 2","termid":"PBO:0065530"}


id: FYPO:0002340
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of DNA recombination is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal DNA recombination during vegetative growth","termid":"FYPO:0001345"},{"relation_name":"is_a","term_name":"decreased DNA recombination","termid":"FYPO:0002712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000293","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"decreased DNA recombination during vegetative growth","synonyms":[{"name":"decreased DNA recombination during mitotic cell cycle","type":"related"},{"name":"decreased DNA recombination frequency during vegetative growth","type":"exact"},{"name":"decreased DNA recombination rate during vegetative growth","type":"related"},{"name":"decreased recombination during vegetative growth","type":"exact"},{"name":"reduced DNA recombination during vegetative growth","type":"exact"}],"termid":"FYPO:0002340"}


id: GO:0021744
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the dorsal motor nucleus of the vagus nerve over time, from its formation to the mature structure.","definition_xrefs":["GOC:curators","GOC:jid","GO_REF:0000021","GOC:cls","GOC:dgh","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neural nucleus development","termid":"GO:0048857"},{"relation_name":"part_of","term_name":"medulla oblongata development","termid":"GO:0021550"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dorsal motor nucleus of vagus nerve development","termid":"GO:0021744"}


id: PBO:0002508
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytoplasmic cysteine-tRNA ligase Crs1 (predicted)","termid":"PBO:0002508"}


id: GO:0099107
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Modulation of the activity of an ion channel via direct interaction with it as part of G protein-coupled receptor signaling.","definition_xrefs":["GOC:dos"],"gene_count":0,"genotype_count":0,"name":"obsolete ion channel regulator activity involved in G protein-coupled receptor signaling pathway (obsolete GO:0099107)","synonyms":[{"name":"ion channel regulator activity involved in G-protein coupled receptor signaling pathway","type":"exact"}],"termid":"GO:0099107"}


id: GO:0098851
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to double-stranded miRNA. double-stranded miRNA is formed by processing of pre-miRNA stem-loop structures.","definition_xrefs":["PMID:19966796","GOC:rph","GOC:BHF","GOC:BHF_miRNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"double-stranded RNA binding","termid":"GO:0003725"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003723"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0003723"],"is_obsolete":false,"name":"double-stranded miRNA binding","synonyms":[{"name":"miRNA duplex binding","type":"exact"}],"termid":"GO:0098851"}


id: MONDO:0032707
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"turnpenny-fry syndrome","secondary_identifiers":["UMLS:C5193060","MEDGEN:1683283","OMIM:618371"],"synonyms":[{"name":"Neurocardioskeletal Syndrome","type":"related"},{"name":"TPFS","type":"related"},{"name":"TURNPENNY-FRY SYNDROME","type":"related"}],"termid":"MONDO:0032707","xrefs":{"Monarch":{"xref_id":"0032707"}}}


id: PBO:0085100
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nuclear protein; possibly involved in regulation of cation stress responses and/or in the establishment of bipolar budding pattern; relative distribution to the nucleus decreases upon DNA replication stress","termid":"PBO:0085100"}


id: PBO:0055527
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2961","termid":"PBO:0055527"}


id: MOD:01337
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-asparagine residue to L-aspartate 4-methyl ester.","definition_xrefs":["Unimod:528#N"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-aspartic acid 4-methyl ester","termid":"MOD:01181"},{"relation_name":"is_a","term_name":"deamidated and methyl esterified residue","termid":"MOD:01369"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"deamidated 4-methyl esterified asparagine","synonyms":[{"name":"Deamidation followed by a methylation","type":"related"},{"name":"Methyl+Deamidated","type":"related"}],"termid":"MOD:01337"}


id: MONDO:0044972
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disease or disorder that involves the eosinophil.","definition_xrefs":["MONDO:design_pattern"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukocyte disorder","termid":"MONDO:0004805"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"eosinophil disorder","secondary_identifiers":["SCTID:417967008","UMLS:C1691020","MEDGEN:739396"],"synonyms":[{"name":"disease of eosinophil","type":"exact"},{"name":"disease or disorder of eosinophil","type":"exact"},{"name":"disorder of eosinophil","type":"exact"},{"name":"eosinophil disease or disorder","type":"exact"}],"termid":"MONDO:0044972","xrefs":{"Monarch":{"xref_id":"0044972"}}}


id: MONDO:0015117
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Any of the forms of hepatobiliary neoplasm that have a rare incidence.","definition_xrefs":["MONDO:patterns/rare"],"gene_count":0,"genotype_count":0,"name":"obsolete rare hepatic and biliary tract tumor (obsolete MONDO:0015117)","secondary_identifiers":["Orphanet:101943"],"synonyms":[{"name":"rare hepatobiliary neoplasm","type":"exact"}],"termid":"MONDO:0015117","xrefs":{"Monarch":{"xref_id":"0015117"}}}


id: MONDO:0020092
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare idiopathic male infertility (obsolete MONDO:0020092)","secondary_identifiers":["Orphanet:98345"],"termid":"MONDO:0020092","xrefs":{"Monarch":{"xref_id":"0020092"}}}


id: PBO:0028654
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_snRNA_3'-end_processing","termid":"PBO:0028654"}


id: PATO:0001130
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001130 ratio value (obsolete PATO:0001130)","termid":"PATO:0001130"}


id: PBO:0079306
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis-specific transcript, Y-linked 3","termid":"PBO:0079306"}


id: MONDO:0003306
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neurofibroma characterized by the presence of cellular pleomorphism.","definition_xrefs":["NCIT:C41426"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neurofibroma","termid":"MONDO:0016755"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"atypical neurofibroma","secondary_identifiers":["DOID:5153","MEDGEN:267320","UMLS:C1510961"],"synonyms":[{"name":"atypical neurofibroma","type":"exact"}],"termid":"MONDO:0003306","xrefs":{"Monarch":{"xref_id":"0003306"}}}


id: PBO:0062424
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily E member 85B pseudogene","termid":"PBO:0062424"}


id: PBO:0041807
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"caspase recruitment domain family member 18","termid":"PBO:0041807"}


id: PR:P0CT54
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- tef102 gene.","definition_xrefs":["UniProtKB:P0CT54","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongation factor 1-alpha-B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23A1.10","synonyms":[{"name":"EF-1-alpha-B (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-tef102","type":"exact"}],"termid":"PR:P0CT54"}


id: PBO:0057082
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 181b-1","termid":"PBO:0057082"}


id: PBO:0038969
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenosine A1 receptor","termid":"PBO:0038969"}


id: GO:0033353
data:
  {"annotated_genes":["SJAG_03556","SJAG_04425"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[77861],"is_not":false,"summary":null,"term":"GO:0033353"},{"annotations":[98881],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0019284"}]},"cv_name":"biological_process","definition":"A cyclic series of interconversions involving S-adenosylmethionine, S-adenosyl-L-homocysteine, L-cysteine, and L-methionine. Couples utilization of the methyl group of SAM with recycling of the homocysteinyl group and regeneration of methionine.","definition_xrefs":["MetaCyc:PWY-5041","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine metabolic process","termid":"GO:0046500"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03556":null,"SJAG_04425":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0008150","GO:0006790"],"is_obsolete":false,"name":"S-adenosylmethionine cycle","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"SAM cycle","type":"exact"},{"name":"activated methyl cycle","type":"exact"}],"termid":"GO:0033353","terms_by_termid":{"GO:0019284":null,"GO:0033353":null}}


id: PBO:0075556
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spen family transcriptional repressor","termid":"PBO:0075556"}


id: PBO:0076518
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"taste 2 receptor member 20","termid":"PBO:0076518"}


id: PBO:0082527
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cell wall adhesin, expressed specifically during mating; may be involved in maintenance of cell wall integrity during mating; FIG2 has a paralog, AGA1, that arose from the whole genome duplication","termid":"PBO:0082527"}


id: PBO:0066425
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RERE antisense RNA 1","termid":"PBO:0066425"}


id: GO:0010881
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cardiac muscle contraction via the regulation of the release of sequestered calcium ion by sarcoplasmic reticulum into cytosol. The sarcoplasmic reticulum is the endoplasmic reticulum of striated muscle, specialised for the sequestration of calcium ions that are released upon receipt of a signal relayed by the T tubules from the neuromuscular junction.","definition_xrefs":["GOC:BHF","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum","termid":"GO:0010880"},{"relation_name":"is_a","term_name":"regulation of cardiac muscle contraction by calcium ion signaling","termid":"GO:0010882"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0055085","GO:0023052"],"is_obsolete":false,"name":"regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion","termid":"GO:0010881"}


id: GO:0110138
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of imaginal disc-derived leg joint morphogenesis.","definition_xrefs":["GOC:ha","PMID:25329825"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of developmental process","termid":"GO:0051094"},{"relation_name":"is_a","term_name":"regulation of imaginal disc-derived leg joint morphogenesis","termid":"GO:0110137"},{"relation_name":"positively_regulates","term_name":"imaginal disc-derived leg morphogenesis","termid":"GO:0007480"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of imaginal disc-derived leg joint morphogenesis","termid":"GO:0110138"}


id: MONDO:0009357
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"humeroradial synostosis","termid":"MONDO:0007737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"humeroradial synostosis with craniofacial anomalies","secondary_identifiers":["MEDGEN:369834","OMIM:236410","UMLS:C1968717","MESH:C566888"],"synonyms":[{"name":"humeroradial synostosis with craniofacial anomalies","type":"exact"}],"termid":"MONDO:0009357","xrefs":{"Monarch":{"xref_id":"0009357"}}}


id: PBO:0038800
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADAM metallopeptidase domain 6 (pseudogene)","termid":"PBO:0038800"}


id: MONDO:0016563
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"PSP-corticobasal syndrome (PSP-CBS) is an atypical variant of progressive supranuclear palsy (PSP), a rare late-onset neurodegenerative disease.","definition_xrefs":["Orphanet:240103"],"direct_ancestors":[{"relation_name":"is_a","term_name":"atypical progressive supranuclear palsy syndrome","termid":"MONDO:0020488"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"progressive supranuclear palsy-corticobasal syndrome","secondary_identifiers":["GARD:20648","UMLS:C5548189","MEDGEN:1781130"],"synonyms":[{"name":"PSP-CBS","type":"exact"},{"name":"PSP-corticobasal syndrome","type":"exact"}],"termid":"MONDO:0016563","xrefs":{"Monarch":{"xref_id":"0016563"}}}


id: MONDO:0003517
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A teratoma which may be cystic; it is composed entirely of well differentiated, adult-type tissues, without evidence of fetal-type tissues.","definition_xrefs":["NCIT:C9015"],"direct_ancestors":[{"relation_name":"is_a","term_name":"teratoma","termid":"MONDO:0002601"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mature teratoma","secondary_identifiers":["NANDO:2200105","SCTID:254875009","MEDGEN:277967","UMLS:C1368910","ONCOTREE:VMT","DOID:5566","ICDO:9080/0"],"synonyms":[{"name":"mature teratoma","type":"exact"}],"termid":"MONDO:0003517","xrefs":{"Monarch":{"xref_id":"0003517"}}}


id: PBO:0067696
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5.8S ribosomal pseudogene 4","termid":"PBO:0067696"}


id: PBO:0090234
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCR4-Not complex scaffold subunit 1","termid":"PBO:0090234"}


id: PBO:0027931
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_kinase_activity_during_cellular_response_to_heat","termid":"PBO:0027931"}


id: PBO:0034589
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cellular_lysophosphatidylethanolamine_level","termid":"PBO:0034589"}


id: PBO:0078701
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Leu (anticodon CAA) 3-1","termid":"PBO:0078701"}


id: PBO:0043317
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"clathrin interactor 1","termid":"PBO:0043317"}


id: MONDO:0006805
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Angina pectoris (or equivalent type of ischemic discomfort) which has recently changed in frequency, duration, intensity, or occurs at rest.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"coronary artery disorder","termid":"MONDO:0005010"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"intermediate coronary syndrome","secondary_identifiers":["DOID:8805","EFO:1000985","ICD10CM:I20.0","MedDRA:10022554","MESH:D000789","ICD9:411.1","MEDGEN:296","UMLS:C0002965"],"synonyms":[{"name":"Preinfarction angina","type":"exact"},{"name":"angina at rest","type":"exact"},{"name":"anginal chest pain at rest","type":"exact"},{"name":"impending infarction","type":"exact"},{"name":"unstable angina","type":"exact"},{"name":"worsening angina","type":"exact"}],"termid":"MONDO:0006805","xrefs":{"Monarch":{"xref_id":"0006805"}}}


id: PBO:0065012
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PR/SET domain 16","termid":"PBO:0065012"}


id: PBO:0028886
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_RNA_splicing","termid":"PBO:0028886"}


id: PBO:0079943
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"USH2A antisense RNA 2","termid":"PBO:0079943"}


id: GO:0034357
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A membrane enriched in complexes formed of reaction centers, accessory pigments and electron carriers, in which photosynthetic reactions take place.","definition_xrefs":["GOC:ds","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane","termid":"GO:0016020"},{"relation_name":"part_of","term_name":"thylakoid","termid":"GO:0009579"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"photosynthetic membrane","termid":"GO:0034357"}


id: MONDO:0957463
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"tuberculosis","termid":"MONDO:0018076"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"primary bone and joint tuberculosis","secondary_identifiers":["MEDGEN:1843400","Orphanet:645822","UMLS:C5816705"],"termid":"MONDO:0957463","xrefs":{"Monarch":{"xref_id":"0957463"}}}


id: PBO:0034567
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_chromatin_during_meiotic_cell_cycle","termid":"PBO:0034567"}


id: PBO:0090136
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER protein disulfide isomerase Pdi2","termid":"PBO:0090136"}


id: MOD:01805
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-aspartic acid residue and a glycine residue by an isopeptide bond with formation of N-(L-isoaspartyl)-glycine and the release of water.","definition_xrefs":["PubMed:18671394","PubMed:1826288","ChEBI:21479","RESID:AA0126"],"direct_ancestors":[{"relation_name":"is_a","term_name":"crosslinked residues with loss of water","termid":"MOD:00954"},{"relation_name":"is_a","term_name":"N-(L-isoaspartyl)-glycine","termid":"MOD:01928"},{"relation_name":"is_a","term_name":"crosslinked L-aspartic acid residue","termid":"MOD:02043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-(L-isoaspartyl)-glycine (Asp)","synonyms":[{"name":"(2S)-2-amino-4-(carboxymethyl)amino-4-oxobutanoic acid","type":"exact"},{"name":"2-amino-N4-(carboxymethyl)-butanediamic acid","type":"exact"},{"name":"CROSSLNK Isoaspartyl glycine isopeptide (Asp-Gly)","type":"exact"},{"name":"CROSSLNK Isoaspartyl glycine isopeptide (Gly-Asp)","type":"exact"},{"name":"N-(L-isoaspartyl)-glycine","type":"exact"},{"name":"N-beta-aspartylglycine","type":"exact"},{"name":"N4-(carboxymethyl)-asparagine","type":"exact"},{"name":"isoaspartyl glycine","type":"exact"}],"termid":"MOD:01805"}


id: MONDO:0019205
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The association of amelogenesis imperfecta and a microscopically typical hair dysplasia has been found in several members of a family in two generations. Transmission is X-linked.","definition_xrefs":["Orphanet:79129"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ectodermal dysplasia syndrome","termid":"MONDO:0019287"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"trichodysplasia-amelogenesis imperfecta syndrome","secondary_identifiers":["MEDGEN:930013","UMLS:C4304344","GARD:18943"],"termid":"MONDO:0019205","xrefs":{"Monarch":{"xref_id":"0019205"}}}


id: MONDO:0100401
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any acute myeloid leukemia that has the chromosomal anomaly del(5q31-q32). (A cytogenetic abnormality that refers to deletion of chromosome bands 31-32 on the long arm of chromosome 5.)","definition_xrefs":["NCIT:C168769"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acute myeloid leukemia","termid":"MONDO:0018874"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570","MONDO:0004992"],"is_obsolete":false,"name":"acute myeloid leukemia, del(5q31-q32)","synonyms":[{"name":"AML, 5q31-32 Deletion","type":"exact"},{"name":"AML, del(5)(q31-q32)","type":"exact"},{"name":"AML, del(5)(q31q32)","type":"exact"},{"name":"AML, del(5q31-q32)","type":"exact"}],"termid":"MONDO:0100401","xrefs":{"Monarch":{"xref_id":"0100401"}}}


id: MONDO:0043218
data:
  {"annotated_genes":["SJAG_00495","SJAG_03145","SJAG_04745","SJAG_02286","SJAG_02063"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86183],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013644"},{"annotations":[87285],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010557"},{"annotations":[86813],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013805"},{"annotations":[86837],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007918"},{"annotations":[86316],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013542"},{"annotations":[87421],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009796"}]},"cv_name":"mondo","definition":"A disorder of the nervous system related to a vascular etiology.","definition_xrefs":["NCIT:C117007"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system disorder","termid":"MONDO:0005071"},{"relation_name":"is_a","term_name":"vascular disorder","termid":"MONDO:0005385"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00495":null,"SJAG_02063":null,"SJAG_02286":null,"SJAG_03145":null,"SJAG_04745":null},"genotype_count":0,"is_obsolete":false,"name":"neurovascular disorder","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C3898144","MEDGEN:857738"],"synonyms":[{"name":"disease of nervous system vasculature","type":"exact"},{"name":"nervous system disorder of vasculature","type":"exact"},{"name":"neurovascular disorder","type":"exact"},{"name":"vasculature nervous system disorder","type":"exact"}],"termid":"MONDO:0043218","terms_by_termid":{"MONDO:0007918":null,"MONDO:0009796":null,"MONDO:0010557":null,"MONDO:0013542":null,"MONDO:0013644":null,"MONDO:0013805":null},"xrefs":{"Monarch":{"xref_id":"0043218"}}}


id: GO:0044029
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An epigenetic gene regulation mechanism that positively regulates gene expression by demethylation of cytosine residues in chromosomal CpG islands. CpG islands are genomic regions that contain a high frequency of the CG dinucleotide and are often associated with the transcription start site of genes.","definition_xrefs":["PMID:36150101","Wikipedia:Cpg_island"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription initiation-coupled chromatin remodeling","termid":"GO:0045815"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006351"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0006325"}],"interesting_parent_ids":["GO:0008150","GO:0006351","GO:0010467","GO:0006325"],"is_obsolete":false,"name":"positive regulation of gene expression via chromosomal CpG island demethylation","synonyms":[{"name":"DNA demethylation","type":"broad"},{"name":"DNA hypomethylation of CpG island","type":"exact"},{"name":"hypomethylation of CpG island","type":"exact"},{"name":"positive regulation of gene expression via chromosomal CpG dinucleotide demethylation","type":"exact"}],"termid":"GO:0044029"}


id: PBO:0047310
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fatty acid synthase","termid":"PBO:0047310"}


id: PBO:0031289
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_mitotic_sister_chromatid_segregation","termid":"PBO:0031289"}


id: PBO:0073980
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 24 member 1","termid":"PBO:0073980"}


id: PBO:0002752
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"M-factor precursor Mfm1","termid":"PBO:0002752"}


id: PBO:0073932
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 17 member 5","termid":"PBO:0073932"}


id: PBO:0031780
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_endocytosis_during_vegetative_growth","termid":"PBO:0031780"}


id: PBO:0052391
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin family member 28, pseudogene","termid":"PBO:0052391"}


id: PBO:0075332
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorbin and SH3 domain containing 1","termid":"PBO:0075332"}


id: MONDO:0013205
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Fuchs' endothelial dystrophy","termid":"MONDO:0005321"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"corneal dystrophy, fuchs endothelial, 5","secondary_identifiers":["OMIM:613269","GARD:18220","MEDGEN:413308","UMLS:C2750449","MESH:C567676"],"synonyms":[{"name":"FECD5","type":"exact"},{"name":"Fcd3 locus","type":"related"},{"name":"corneal dystrophy, Fuchs endothelial, 5","type":"related"},{"name":"corneal dystrophy, Fuchs endothelial, late-onset","type":"related"}],"termid":"MONDO:0013205","xrefs":{"Monarch":{"xref_id":"0013205"}}}


id: PBO:0031897
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial iron-sulfur cluster assembly protein Nfu1 (predicted)","termid":"PBO:0031897"}


id: GO:0001907
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process mediated by a symbiont that results in the death of a cell in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:add","PMID:22992735","PMID:26633512","PMID:11123917","PMID:23230295"],"direct_ancestors":[{"relation_name":"is_a","term_name":"killing of cells of another organism","termid":"GO:0031640"},{"relation_name":"is_a","term_name":"biological process involved in interaction with host","termid":"GO:0051701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated killing of host cell","secondary_identifiers":["Reactome:R-HSA-9637698"],"synonyms":[{"name":"killing by symbiont of host cells","type":"exact"},{"name":"pathogenesis","type":"related"}],"termid":"GO:0001907"}


id: MONDO:0015315
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Neonatal brainstem dysfunction is a rare neurologic disease characterized by the association of suction-swallowing dysfunction, abnormal laryngeal sensitivity and motility (manifesting with dyspnea or obstructive apnea-hypopnea), gastroesophageal reflux (generally resistant to medication) and cardiac vagal overactivity (e.g. brachycardia, vasovagal episodes) of varying degrees of severity. Impaired social interaction has also been reported.","definition_xrefs":["Orphanet:137929"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system disorder","termid":"MONDO:0005071"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neonatal brainstem dysfunction","secondary_identifiers":["MEDGEN:1665998","UMLS:C4749374","GARD:19892"],"termid":"MONDO:0015315","xrefs":{"Monarch":{"xref_id":"0015315"}}}


id: GO:0100063
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates dipeptide transmembrane transport.","definition_xrefs":["GOC:obol","GOC:cjm"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of dipeptide transmembrane transport by transcription from RNA polymerase II promoter (obsolete GO:0100063)","termid":"GO:0100063"}


id: PBO:0066551
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulator of G protein signaling 14","termid":"PBO:0066551"}


id: GO:0016864
data:
  {"annotated_genes":["SJAG_03414","SJAG_02301","SJAG_04046","SJAG_00131","SJAG_00288","SJAG_04904"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[70655,101135,110363,116248,88968,73203],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003756"}]},"cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction (redox) reaction in which the hydrogen donor and acceptor are the same molecule, one or more sulfur-sulfur bonds in the molecule are rearranged, and no oxidized product appears.","definition_xrefs":["GOC:mah","EC:5.3.4.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular oxidoreductase activity","termid":"GO:0016860"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00131":null,"SJAG_00288":null,"SJAG_02301":null,"SJAG_03414":null,"SJAG_04046":null,"SJAG_04904":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016853","GO:0003674"],"is_obsolete":false,"name":"intramolecular oxidoreductase activity, transposing S-S bonds","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"intramolecular isomerase activity, transposing S-S bonds","type":"exact"}],"termid":"GO:0016864","terms_by_termid":{"GO:0003756":null}}


id: PBO:0065064
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteoglycan 2, pro eosinophil major basic protein","termid":"PBO:0065064"}


id: PBO:0080022
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 17 like family member 8","termid":"PBO:0080022"}


id: MOD:00553
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes a (2-sulfanylethyl)sulfanyl (or thioethylthiol) group for a hydroxy group.","definition_xrefs":["PubMed:11507762","DeltaMass:0","Unimod:200"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1,2-ethanedithiol modified residue","synonyms":[{"name":"1,2-ethanedithiol (EDT)","type":"exact"},{"name":"EDT","type":"related"},{"name":"Ethanedithiol","type":"related"}],"termid":"MOD:00553"}


id: PBO:0075633
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small proline rich protein 2C (pseudogene)","termid":"PBO:0075633"}


id: PBO:0074592
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 6","termid":"PBO:0074592"}


id: PBO:0044928
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diacylglycerol kinase gamma","termid":"PBO:0044928"}


id: MONDO:0011670
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Ehlers-Danlos syndrome","termid":"MONDO:0020066"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ehlers-Danlos syndrome due to tenascin-X deficiency","secondary_identifiers":["DOID:0080731","Orphanet:230839","OMIM:606408","MESH:C536193","MEDGEN:336244","GARD:8507","icd11.foundation:1840696236","UMLS:C1848029"],"synonyms":[{"name":"EDS due to TNX deficiency","type":"related"},{"name":"EDS due to Tnx deficiency","type":"related"},{"name":"EDS, classic-like type","type":"exact"},{"name":"EDSCLL","type":"related"},{"name":"Ehlers-Danlos syndrome due to tenascin-X deficiency","type":"exact"},{"name":"Ehlers-Danlos syndrome, classic-like","type":"related"},{"name":"Ehlers-Danlos syndrome, classic-like type","type":"exact"},{"name":"Ehlers-Danlos syndrome, classic-like, 1","type":"exact"},{"name":"Ehlers-Danlos-like syndrome due to tenascin-X deficiency","type":"related"},{"name":"TNX deficiency","type":"related"},{"name":"Tnx deficiency","type":"related"},{"name":"clEDS","type":"related"},{"name":"classical-like EDS","type":"related"},{"name":"classical-like Ehlers-Danlos syndrome","type":"related"}],"termid":"MONDO:0011670","xrefs":{"Monarch":{"xref_id":"0011670"}}}


id: PBO:0039772
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AQP5 and AQP2 antisense RNA 2","termid":"PBO:0039772"}


id: PBO:0041669
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcyclin binding protein pseudogene 2","termid":"PBO:0041669"}


id: GO:0008303
data:
  {"annotated_genes":["SJAG_02776","SJAG_05278","SJAG_03292","SJAG_00846","SJAG_03672"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[71233,71032,74914,75736,74912],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042765"}]},"cv_name":"cellular_component","definition":"A protein complex that contains one or more cysteine-type endopeptidases (also called caspases), which give the complex a peptidase activity with specificity for the hydrolysis of aspartyl bonds. These complexes may be involved e.g. in apoptotic or inflammation processes.","definition_xrefs":["PMID:15569692","GOC:mtg_apoptosis","GOC:cna"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endopeptidase complex","termid":"GO:1905369"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00846":null,"SJAG_02776":null,"SJAG_03292":null,"SJAG_03672":null,"SJAG_05278":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"caspase complex","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"cysteine-type endopeptidase complex","type":"exact"}],"termid":"GO:0008303","terms_by_termid":{"GO:0042765":null}}


id: GO:0005844
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A multiribosomal structure representing a linear array of ribosomes held together by messenger RNA. They represent the active complexes in cellular protein synthesis and are able to incorporate amino acids into polypeptides both in vivo and in vitro.","definition_xrefs":["ISBN:0198506732","NIF_Subcellular:sao1038025871"],"gene_count":0,"genotype_count":0,"name":"obsolete polysome (obsolete GO:0005844)","secondary_identifiers":["Wikipedia:Polysome"],"synonyms":[{"name":"polyribosome","type":"exact"}],"termid":"GO:0005844"}


id: PBO:0066095
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAS p21 protein activator 4D, pseudogene","termid":"PBO:0066095"}


id: GO:0070990
data:
  {"annotated_genes":["SJAG_02279","SJAG_04914","SJAG_02558","SJAG_03291"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[70870,87783],"is_not":false,"summary":null,"term":"GO:0070990"},{"annotations":[114244,70737],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990446"},{"annotations":[114245],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990447"}]},"cv_name":"molecular_function","definition":"Binding to a small nuclear ribonucleoprotein particle.","definition_xrefs":["GOC:rl","GOC:mah","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribonucleoprotein complex binding","termid":"GO:0043021"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02279":null,"SJAG_02558":null,"SJAG_03291":null,"SJAG_04914":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"snRNP binding","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0070990","terms_by_termid":{"GO:0070990":null,"GO:1990446":null,"GO:1990447":null}}


id: GO:0000943
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A complex of the retrotransposon RNA genome, reverse transcriptase, integrase, and associated molecules required for reproduction and integration of the retrotransposon into the host genome; the main structural molecule of the nucleocapsid is often a gag protein homolog.","definition_xrefs":["PMID:10861903","GOC:clt"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"nucleus","termid":"GO:0005634"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005575","GO:0005634"],"is_obsolete":false,"name":"retrotransposon nucleocapsid","secondary_identifiers":["Wikipedia:Virus-like_particle"],"synonyms":[{"name":"VLP","type":"exact"},{"name":"Virus-like particle","type":"exact"}],"termid":"GO:0000943"}


id: PBO:0075721
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorcin pseudogene 2","termid":"PBO:0075721"}


id: GO:0051041
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of calcium-independent cell-cell adhesion.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell-cell adhesion","termid":"GO:0022409"},{"relation_name":"is_a","term_name":"regulation of calcium-independent cell-cell adhesion","termid":"GO:0051040"},{"relation_name":"positively_regulates","term_name":"calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules","termid":"GO:0016338"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"positive regulation of calcium-independent cell-cell adhesion","synonyms":[{"name":"activation of calcium-independent cell-cell adhesion","type":"narrow"},{"name":"stimulation of calcium-independent cell-cell adhesion","type":"narrow"},{"name":"up regulation of calcium-independent cell-cell adhesion","type":"exact"},{"name":"up-regulation of calcium-independent cell-cell adhesion","type":"exact"},{"name":"upregulation of calcium-independent cell-cell adhesion","type":"exact"}],"termid":"GO:0051041"}


id: GO:0052334
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which an organism effects a change in the structure or function of the cytoskeleton of a second organism, where the two organisms are in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete modification by organism of cytoskeleton of other organism involved in symbiotic interaction (obsolete GO:0052334)","synonyms":[{"name":"modification by organism of cytoskeleton of other organism during symbiotic interaction","type":"related"}],"termid":"GO:0052334"}


id: MONDO:0000763
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"corneal dystrophy","termid":"MONDO:0018102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"epithelial and subepithelial corneal dystrophy","secondary_identifiers":["DOID:0060440"],"synonyms":[{"name":"epithelial and subepithelial dystrophy","type":"related"}],"termid":"MONDO:0000763","xrefs":{"Monarch":{"xref_id":"0000763"}}}


id: MONDO:0014079
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"restless legs syndrome, susceptibility to","termid":"MONDO:0100170"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"restless legs syndrome, susceptibility to, 8","secondary_identifiers":["UMLS:C3554664","OMIM:615197","MEDGEN:767578"],"synonyms":[{"name":"RLS8","type":"exact"},{"name":"restless legs syndrome 8","type":"exact"},{"name":"restless legs syndrome, susceptibility to, 8","type":"exact"}],"termid":"MONDO:0014079","xrefs":{"Monarch":{"xref_id":"0014079"}}}


id: PBO:0079251
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TTC23 antisense RNA 1","termid":"PBO:0079251"}


id: FYPO:0005158
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of (1->6)-beta-D-glucan measured in the cell wall is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cell wall beta-glucan level","termid":"FYPO:0001082"},{"relation_name":"is_a","term_name":"decreased cell wall galactomannan level","termid":"FYPO:0002265"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002946"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0002946","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"decreased cell wall (1->6)-beta-D-glucan level","synonyms":[{"name":"decreased cell wall (1->6)-beta-D-glucan accumulation","type":"related"},{"name":"decreased cell wall (1->6)-beta-D-glucan level during mitotic cell cycle","type":"related"},{"name":"decreased cell wall (1->6)-beta-D-glucan level during vegetative growth","type":"exact"},{"name":"reduced cell wall (1->6)-beta-D-glucan level","type":"exact"}],"termid":"FYPO:0005158"}


id: GO:0005468
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete small-molecule carrier or transporter (obsolete GO:0005468)","synonyms":[{"name":"small-molecule carrier or transporter","type":"exact"}],"termid":"GO:0005468"}


id: PBO:0013751
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sterol 14-demethylase Erg11 (predicted)","termid":"PBO:0013751"}


id: PBO:0065101
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRKAR1B antisense RNA 2","termid":"PBO:0065101"}


id: MONDO:0011632
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any amyotrophic lateral sclerosis in which the cause of the disease is a mutation in the MATR3 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial amyotrophic lateral sclerosis","termid":"MONDO:0005144"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"amyotrophic lateral sclerosis type 21","secondary_identifiers":["GARD:18619","NCIT:C168755","OMIM:606070","DOID:0060212","UMLS:C3807521","MEDGEN:813851"],"synonyms":[{"name":"ALS21","type":"exact"},{"name":"MATR3 amyotrophic lateral sclerosis","type":"exact"},{"name":"amyotrophic lateral sclerosis 21","type":"related"},{"name":"amyotrophic lateral sclerosis caused by mutation in MATR3","type":"exact"},{"name":"amyotrophic lateral sclerosis type 21","type":"exact"},{"name":"myopathy, distal, 2","type":"related"},{"name":"myopathy, distal, 2, formerly","type":"related"},{"name":"vocal cord and pharyngeal dysfunction with distal myopathy","type":"related"},{"name":"vocal cord and pharyngeal dysfunction with distal myopathy, formerly","type":"related"}],"termid":"MONDO:0011632","xrefs":{"Monarch":{"xref_id":"0011632"}}}


id: GO:0002504
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an antigen-presenting cell expresses antigen (peptide or polysaccharide) on its cell surface in association with an MHC class II protein complex.","definition_xrefs":["GOC:add","PMID:15531770","PMID:16153240","PMID:15771591","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antigen processing and presentation","termid":"GO:0019882"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antigen processing and presentation of peptide or polysaccharide antigen via MHC class II","synonyms":[{"name":"peptide or polysaccharide antigen processing and presentation of via MHC class II","type":"exact"}],"termid":"GO:0002504"}


id: PBO:0047043
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 106 member D, pseudogene","termid":"PBO:0047043"}


id: MONDO:0001087
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disorder characterized by an enduring pattern of inability to establish close relationships coupled with cognitive or perceptual distortions, odd beliefs and speech, and eccentric behavior and appearance.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"personality disorder","termid":"MONDO:0002028"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"schizotypal personality disorder","secondary_identifiers":["DOID:10646","SCTID:31027006","MEDGEN:1826899","NCIT:C92632","UMLS:C1443045","ICD9:301.22","MESH:D012569"],"termid":"MONDO:0001087","xrefs":{"Monarch":{"xref_id":"0001087"}}}


id: PBO:0085721
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in telomeric silencing; required for quiescent cell telomere hypercluster localization at nuclear membrane vicinity; interacts with PAD4-domain of Sir4p","termid":"PBO:0085721"}


id: GO:0102927
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: beta-chaconine + UDP-L-rhamnose = H+ + alpha-chaconine + UDP.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete beta-chaconine rhamnosyltransferase activity (obsolete GO:0102927)","termid":"GO:0102927"}


id: PBO:0028879
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_histone_H2B-K119_ubiquitination","termid":"PBO:0028879"}


id: GO:2001131
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a methane from a dimethyl sulfide.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur compound metabolic process","termid":"GO:0006790"},{"relation_name":"is_a","term_name":"methanogenesis","termid":"GO:0015948"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0006790","GO:0006091","GO:0008150"],"is_obsolete":false,"name":"methane biosynthetic process from dimethyl sulfide","termid":"GO:2001131"}


id: GO:0070682
data:
  {"annotated_genes":["SJAG_02570","SJAG_00954","SJAG_04844"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[80384,99843,116127],"is_not":false,"summary":null,"term":"GO:0070682"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a mature, active proteasome regulatory particle complex.","definition_xrefs":["GOC:rb","PMID:19412159","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proteasome assembly","termid":"GO:0043248"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00954":null,"SJAG_02570":null,"SJAG_04844":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0065003"],"is_obsolete":false,"name":"proteasome regulatory particle assembly","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"proteasome regulatory complex assembly","type":"exact"}],"termid":"GO:0070682","terms_by_termid":{"GO:0070682":null}}


id: PBO:0029875
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_H3_acetylation","termid":"PBO:0029875"}


id: PBO:0027651
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cellular_phosphatidylcholine_level","termid":"PBO:0027651"}


id: FYPO:0005449
data:
  {"alleles_by_uniquename":{"SJAG_00028:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00028","name":"rga6delta","uniquename":"SJAG_00028:allele-1"},"SJAG_00514:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00514","name":"scd1delta","uniquename":"SJAG_00514:allele-1"},"SJAG_00610:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00610","name":"pck2delta","uniquename":"SJAG_00610:allele-1"},"SJAG_01050:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01050","name":"nur1delta","uniquename":"SJAG_01050:allele-1"},"SJAG_01143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01143","name":"mid1delta","uniquename":"SJAG_01143:allele-1"},"SJAG_01330:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01330","name":"mad2delta","uniquename":"SJAG_01330:allele-1"},"SJAG_01745:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01745","name":"lem2delta","uniquename":"SJAG_01745:allele-1"},"SJAG_02252:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02252","name":"ace2delta","uniquename":"SJAG_02252:allele-1"},"SJAG_02392:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02392","name":"pom1delta","uniquename":"SJAG_02392:allele-1"},"SJAG_02592:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02592","name":"sty1delta","uniquename":"SJAG_02592:allele-1"},"SJAG_03143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03143","name":"sep1delta","uniquename":"SJAG_03143:allele-1"},"SJAG_03892:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03892","name":"vps4delta","uniquename":"SJAG_03892:allele-1"},"SJAG_04522:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04522","name":"rga4delta","uniquename":"SJAG_04522:allele-1"},"SJAG_04551:allele-4":{"allele_type":"partial_amino_acid_deletion","description":"Pmk1 from S. pombe with deleted residues 82-105","gene_uniquename":"SJAG_04551","name":"Pmk1Sp(delta82-105)","uniquename":"SJAG_04551:allele-4"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[119748],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004105"},{"annotations":[119623],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001132"},{"annotations":[119706],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007177"}],"single_locus_phenotype":[{"annotations":[119575,119949],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0002998"},{"annotations":[119899,119900],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0006557"},{"annotations":[120006,119600],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004318"},{"annotations":[119732],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004105"},{"annotations":[119632],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001375"},{"annotations":[119695,119703,119707,119696],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007177"},{"annotations":[119789,119797],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0002678"},{"annotations":[119796],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0002033"}]},"cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a specific cellular process does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular process","termid":"FYPO:0000628"},{"relation_name":"is_a","term_name":"abolished biological process","termid":"FYPO:0005448"}],"gene_count":14,"genes_by_uniquename":{"SJAG_00028":null,"SJAG_00514":null,"SJAG_00610":null,"SJAG_01050":null,"SJAG_01143":null,"SJAG_01330":null,"SJAG_01665":null,"SJAG_01745":null,"SJAG_02252":null,"SJAG_02392":null,"SJAG_02592":null,"SJAG_03143":null,"SJAG_03596":null,"SJAG_03703":null,"SJAG_03892":null,"SJAG_04498":null,"SJAG_04522":null,"SJAG_04551":null,"SJAG_05207":null},"genotype_count":12,"genotypes_by_uniquename":{"Pmk1Sp(delta82-105)-Pmk1_from_S._pombe_with_deleted_residues_82-105-partial_amino_acid_deletion-expression-not_assayed_or_wild_type":{"display_name":"Pmk1Sp(delta82-105)(Pmk1 from S. pombe with deleted residues 82-105 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pom1delta","display_uniquename":"mid1delta__pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]},"nur1delta__vps4delta":{"display_name":"nur1delta vps4delta","display_uniquename":"nur1delta__vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01050:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]},"pck2delta":{"display_name":"pck2delta","display_uniquename":"pck2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00610:allele-1","expression":"Null"}]}]},"rga4delta__rga6delta":{"display_name":"rga4delta 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abolished","type":"exact"}],"termid":"FYPO:0005449","terms_by_termid":{"FYECO:0000005":null,"FYECO:0000137":null,"FYECO:0000162":null,"FYECO:0000207":null,"FYECO:0000248":null,"FYPO:0001132":null,"FYPO:0001375":null,"FYPO:0002033":null,"FYPO:0002678":null,"FYPO:0002998":null,"FYPO:0004105":null,"FYPO:0004318":null,"FYPO:0006557":null,"FYPO:0007177":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: PBO:0076556
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thymus, brain and testes associated","termid":"PBO:0076556"}


id: PBO:0069891
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1180, pseudogene","termid":"PBO:0069891"}


id: GO:1902637
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any neural crest cell differentiation that is involved in thymus development.","definition_xrefs":["GOC:nhn","PMID:18292542","GOC:TermGenie","PMID:15741317","GO_REF:0000060"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neural crest cell differentiation","termid":"GO:0014033"},{"relation_name":"part_of","term_name":"thymus development","termid":"GO:0048538"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neural crest cell differentiation involved in thymus development","termid":"GO:1902637"}


id: PBO:0084986
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADP(+)-dependent glutamate dehydrogenase; synthesizes glutamate from ammonia and alpha-ketoglutarate; rate of alpha-ketoglutarate utilization differs from Gdh1p; expression regulated by nitrogen and carbon sources; GDH3 has a paralog, GDH1, that arose from the whole genome duplication","termid":"PBO:0084986"}


id: MONDO:1010693
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"AA amyloidosis that occurs in sheep.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"AA amyloidosis, non-human animal","termid":"MONDO:1010092"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AA amyloidosis, sheep","secondary_identifiers":["OMIA:000038-9940"],"termid":"MONDO:1010693","xrefs":{"Monarch":{"xref_id":"1010693"}}}


id: PBO:0050768
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family H (Hsp110) member 1","termid":"PBO:0050768"}


id: MONDO:0018317
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"digestive system disorder","termid":"MONDO:0004335"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"growth retardation-mild developmental delay-chronic hepatitis syndrome","secondary_identifiers":["Orphanet:391366","UMLS:C4751595","GARD:21621","MEDGEN:1654119"],"termid":"MONDO:0018317","xrefs":{"Monarch":{"xref_id":"0018317"}}}


id: SO:1000092
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Any sequence variant effect that is known at nucleotide level but cannot be explained by using other key terms.","definition_xrefs":["EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000092 sequence_variant_causing_complex_change_of_translational_product (obsolete SO:1000092)","synonyms":[{"name":"mutation causing complex change of translational product","type":"related"},{"name":"sequence variant causing complex change of translational product","type":"exact"}],"termid":"SO:1000092"}


id: GO:0097741
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A hair-like structure covering the flagella found in some algae (heterokonts and cryptophytes). It is approximately 15 nm in diameter, and usually consist of a tubular shaft that itself terminates in smaller hairs. It is composed of glycoproteins and, likely, carbohydrates. Mastigonemes may assist in locomotion by increasing the surface area of a flagellum.","definition_xrefs":["PMID:943397","GOC:cilia","Wikipedia:Mastigoneme"],"direct_ancestors":[{"relation_name":"is_a","term_name":"supramolecular complex","termid":"GO:0099080"},{"relation_name":"part_of","term_name":"motile cilium","termid":"GO:0031514"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"mastigoneme","termid":"GO:0097741"}


id: GO:0015282
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. This term was not defined before being made obsolete.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729"],"gene_count":0,"genotype_count":0,"name":"obsolete NADPH oxidase-associated cytochrome b558 hydrogen channel activity (obsolete GO:0015282)","synonyms":[{"name":"NADPH oxidase-associated cytochrome b558 hydrogen channel activity","type":"exact"},{"name":"NADPH oxidase-associated cytochrome b558 proton channel","type":"exact"}],"termid":"GO:0015282"}


id: PR:Q9HFE6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- nop8 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9HFE6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized RNA-binding protein P16F5.06 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP16F5.06","synonyms":[{"name":"Spom972h-nop8","type":"exact"}],"termid":"PR:Q9HFE6"}


id: PBO:0059949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND2 pseudogene 35","termid":"PBO:0059949"}


id: MONDO:0850104
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"encephalitis","termid":"MONDO:0019956"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paraneoplastic isolated brainstem encephalitis","secondary_identifiers":["Orphanet:624190","UMLS:C5680406","MEDGEN:1842767","GARD:22499"],"termid":"MONDO:0850104","xrefs":{"Monarch":{"xref_id":"0850104"}}}


id: PR:O13869
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A GTP-binding protein GUF1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02049","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation factor guf1, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1B3.04c","secondary_identifiers":["UniProtKB:O13869"],"synonyms":[{"name":"EF-4 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"GTPase guf1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-GUF1","type":"exact"},{"name":"elongation factor 4 homolog (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ribosomal back-translocase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13869"}


id: GO:0006431
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of coupling methionine to methionyl-tRNA, catalyzed by methionyl-tRNA synthetase. The methionyl-tRNA synthetase is a class-I synthetase. The activated amino acid is transferred to the 2'-OH group of a methionine-accetping tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification.","definition_xrefs":["ISBN:0716730510","GOC:mcc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA aminoacylation for protein translation","termid":"GO:0006418"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0006399"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0006520","GO:0006399"],"is_obsolete":false,"name":"methionyl-tRNA aminoacylation","termid":"GO:0006431"}


id: PBO:0056424
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MARCO like","termid":"PBO:0056424"}


id: PR:O74758
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC17D11.03c gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74758"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C17D11.03c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC17D11.03c","synonyms":[{"name":"Spom972h-SPBC17D11.03c","type":"exact"}],"termid":"PR:O74758"}


id: PBO:0067332
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 424, pseudogene","termid":"PBO:0067332"}


id: PBO:0039385
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amylase alpha 1B","termid":"PBO:0039385"}


id: PBO:0013118
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U5 snRNP complex subunit Spf38","termid":"PBO:0013118"}


id: GO:1904788
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in positive regulation of induction of conjugation with cellular fusion.","definition_xrefs":["PMID:22144909","GOC:TermGenie","GO_REF:0000063"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of induction of conjugation with cellular fusion by regulation of transcription from RNA polymerase II promoter (obsolete GO:1904788)","synonyms":[{"name":"positive regulation of induction of conjugation with cellular fusion by global transcription regulation from Pol II promoter","type":"related"},{"name":"positive regulation of induction of conjugation with cellular fusion by regulation of gene-specific transcription from RNA polymerase II promoter","type":"related"},{"name":"positive regulation of induction of conjugation with cellular fusion by regulation of global transcription from Pol II promoter","type":"related"},{"name":"positive regulation of induction of conjugation with cellular fusion by regulation of transcription from Pol II promoter","type":"exact"},{"name":"positive regulation of induction of conjugation with cellular fusion by regulation of transcription from RNA polymerase II promoter, global","type":"related"}],"termid":"GO:1904788"}


id: GO:0044492
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which an organism alters or subverts the activity of a voltage-gated sodium channel in another organism via the action of a venom.","definition_xrefs":["PMID:21781281","GOC:fj","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"venom-mediated perturbation of ion channel activity","termid":"GO:0044560"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"venom-mediated perturbation of voltage-gated sodium channel activity","synonyms":[{"name":"envenomation resulting in modulation of voltage-gated sodium channel activity in another organism","type":"exact"},{"name":"envenomation resulting in modulation of voltage-gated sodium channel activity in other organism","type":"exact"}],"termid":"GO:0044492"}


id: MONDO:0009594
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Metaphyseal chondrodysplasia, Kaitila type is a rare multiple metaphyseal dysplasia disease characterized by disproportionate short stature, short limbs and digits, tracheobronchial malacia and progressive thoracolumbar scoliosis. Radiographic imaging shows progression from marked metaphyseal dysplasia of tubular bones in childhood to short and broad bones with mild dysplasia of the joints in adulthood. There have been no further descriptions in the literature since 1982.","definition_xrefs":["Orphanet:166038"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"metaphyseal chondrodysplasia","termid":"MONDO:0000138"},{"relation_name":"is_a","term_name":"osteochondrodysplasia","termid":"MONDO:0005516"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"metaphyseal chondrodysplasia, Kaitila type","secondary_identifiers":["OMIM:250230","MEDGEN:344446","UMLS:C1855217","GARD:17018","MESH:C565400"],"synonyms":[{"name":"metaphyseal chondrodysplasia, Kaitila type","type":"exact"}],"termid":"MONDO:0009594","xrefs":{"Monarch":{"xref_id":"0009594"}}}


id: MONDO:0022872
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"brain disorder","termid":"MONDO:0005560"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"corpus callosum dysgenesis X-linked recessive","termid":"MONDO:0022872","xrefs":{"Monarch":{"xref_id":"0022872"}}}


id: MONDO:1010723
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Glucocorticoid resistance that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucocorticoid resistance, non-human animal","termid":"MONDO:1010113"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucocorticoid resistance, dog","secondary_identifiers":["OMIA:002254-9615"],"termid":"MONDO:1010723","xrefs":{"Monarch":{"xref_id":"1010723"}}}


id: PR:O13729
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pun1 gene.","definition_xrefs":["UniProtKB:O13729","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUR7 family protein pun1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC15A10.09c","synonyms":[{"name":"Spom972h-pun1","type":"exact"}],"termid":"PR:O13729"}


id: GO:0000401
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a DNA segment containing the open form of a four-way junction, also known as a Holliday junction, a structure where two DNA double strands are held together by reciprocal exchange of two of the four strands, one strand each from the two original helices. The open form of a four-way junction can be diagrammed without any of the strands crossing over.","definition_xrefs":["ISBN:0815332181","PMID:15563464","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"four-way junction DNA binding","termid":"GO:0000400"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003677"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0003677"],"is_obsolete":false,"name":"open form four-way junction DNA binding","synonyms":[{"name":"open form Holliday junction binding","type":"exact"}],"termid":"GO:0000401"}


id: PBO:0057632
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1207","termid":"PBO:0057632"}


id: PBO:0082282
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AP-1-like basic leucine zipper (bZIP) transcriptional activator; involved in stress responses, iron metabolism, and pleiotropic drug resistance; controls a set of genes involved in stabilizing proteins; binds consensus sequence TTACTAA; CAD1 has a paralog, YAP1, that arose from the whole genome duplication","termid":"PBO:0082282"}


id: PBO:0034421
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-regulates_morphogenesis_of","termid":"PBO:0034421"}


id: PBO:0055755
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lncRNA osteogenesis associated","termid":"PBO:0055755"}


id: PBO:0068096
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 403","termid":"PBO:0068096"}


id: GO:1903139
data:
  {"annotated_genes":["SJAG_03969","SJAG_00610","SJAG_03705","SJAG_01787","SJAG_00424","SJAG_04666"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88435,89793,91125,92778,103208,118299],"is_not":false,"summary":null,"term":"GO:1903139"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of a cell integrity MAPK cascade.","definition_xrefs":["GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of stress-activated MAPK cascade","termid":"GO:0032874"},{"relation_name":"is_a","term_name":"regulation of cell integrity MAPK cascade","termid":"GO:1903137"},{"relation_name":"positively_regulates","term_name":"cell integrity MAPK cascade","termid":"GO:0000196"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00424":null,"SJAG_00610":null,"SJAG_01787":null,"SJAG_03705":null,"SJAG_03969":null,"SJAG_04666":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of cell integrity MAPK cascade","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of Mpk1 cascade","type":"narrow"},{"name":"activation of PMK1-MAPK signal transduction pathway","type":"narrow"},{"name":"activation of Pmk1 MAPK cell integrity signaling","type":"narrow"},{"name":"activation of Pmk1 mitogen-activated protein kinase (MAPK) cell integrity pathway","type":"narrow"},{"name":"activation of Slt2 cascade","type":"narrow"},{"name":"activation of cell integrity MAPK pathway","type":"narrow"},{"name":"positive regulation of MAPK cascade involved in cell wall organization or biogenesis","type":"exact"},{"name":"positive regulation of MAPKKK cascade involved in cell wall biogenesis","type":"exact"},{"name":"positive regulation of Mpk1 cascade","type":"narrow"},{"name":"positive regulation of PMK1-MAPK signal transduction pathway","type":"narrow"},{"name":"positive regulation of Pmk1 MAPK cell integrity signaling","type":"narrow"},{"name":"positive regulation of Pmk1 mitogen-activated protein kinase (MAPK) cell integrity pathway","type":"narrow"},{"name":"positive regulation of Slt2 cascade","type":"narrow"},{"name":"positive regulation of cell wal integrity MAPK pathway","type":"exact"},{"name":"positive regulation of cell wall biogenesis, MAPKKK cascade","type":"exact"}],"termid":"GO:1903139","terms_by_termid":{"GO:1903139":null}}


id: MONDO:0007662
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any iridogoniodysgenesis in which the cause of the disease is a mutation in the PITX2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Rieger anomaly","termid":"MONDO:0019628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"anterior segment dysgenesis 4","secondary_identifiers":["DOID:0080609","GARD:3026","MEDGEN:330750","OMIM:137600","UMLS:C1842031"],"synonyms":[{"name":"ASGD4","type":"related"},{"name":"IRID2","type":"exact"},{"name":"PITX2 iridogoniodysgenesis","type":"exact"},{"name":"anterior segment dysgenesis 4","type":"exact"},{"name":"iridogoniodysgenesis caused by mutation in PITX2","type":"exact"},{"name":"iridogoniodysgenesis syndrome","type":"broad"},{"name":"iridogoniodysgenesis type 2","type":"related"},{"name":"iridogoniodysgenesis, type 2","type":"exact"},{"name":"iris hypoplasia with early-onset glaucoma, autosomal dominant","type":"related"}],"termid":"MONDO:0007662","xrefs":{"Monarch":{"xref_id":"0007662"}}}


id: PBO:0061200
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NOC2 like nucleolar associated transcriptional repressor","termid":"PBO:0061200"}


id: PBO:0083619
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"E1-like protein that activates Urm1p before urmylation; also acts in thiolation of the wobble base of cytoplasmic tRNAs by adenylating and then thiolating Urm1p; receives sulfur from Tum1p","termid":"PBO:0083619"}


id: MONDO:1011423
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Complement component 6 deficiency that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune system disorder, non-human animal","termid":"MONDO:0700106"},{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement component 6 deficiency, non-human animal","secondary_identifiers":["OMIA:001624"],"synonyms":[{"name":"C6 deficiency","type":"exact"}],"termid":"MONDO:1011423","xrefs":{"Monarch":{"xref_id":"1011423"}}}


id: PBO:0047155
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 184 member A","termid":"PBO:0047155"}


id: MONDO:0017779
data:
  {"annotated_genes":["SJAG_02949"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85537],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012221"},{"annotations":[85540],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012222"}]},"cv_name":"mondo","definition":"Alpha-N-acetylgalactosaminidase (NAGA) deficiency is a very rare lysosomal storage disease that is clinically and pathologically heterogeneous and is characterized by deficient NAGA activity.","definition_xrefs":["Orphanet:3137"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligosaccharidosis","termid":"MONDO:0019251"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02949":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002561"},{"rel_name":"is_a","termid":"MONDO:0037792"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0037792","MONDO:0002561"],"is_obsolete":false,"name":"alpha-N-acetylgalactosaminidase deficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1845666","DOID:0112317","icd11.foundation:1647881428","ICD9:277.89","NORD:1693","UMLS:C5848084","SCTID:238048001","GARD:16621","NANDO:1200134"],"synonyms":[{"name":"NAGA deficiency","type":"exact"},{"name":"Schindler disease","type":"exact"},{"name":"alpha-N-acetylgalactosaminidase activity disease","type":"exact"},{"name":"disorder of alpha-N-acetylgalactosaminidase activity","type":"exact"}],"termid":"MONDO:0017779","terms_by_termid":{"MONDO:0012221":null,"MONDO:0012222":null},"xrefs":{"Monarch":{"xref_id":"0017779"}}}


id: MOD:01962
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-asparagine residue to N4-(2,4-diacetamido-2,4,6-trideoxy-D-glucosyl)-L-asparagine.","definition_xrefs":["PubMed:12186869","RESID:AA0606","PubMed:19236052"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N4-glycosyl-L-asparagine","termid":"MOD:00160"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"N4-(2,4-diacetamido-2,4,6-trideoxy-D-glucosyl)-L-asparagine","synonyms":[{"name":"(2S)-2-amino-4-[(2,4-diacetylamino-2,4,6-trideoxy-beta-D-glucopyranosyl)amino]-4-oxobutanoic acid","type":"exact"},{"name":"CARBOHYD N-linked (DATDGlc) asparagine","type":"exact"},{"name":"DABA","type":"exact"},{"name":"DATDH","type":"exact"},{"name":"DiNAcBac","type":"exact"},{"name":"N4-(2,4-diacetamido-2,4,6-trideoxy-D-glucosyl)-L-asparagine","type":"exact"},{"name":"N4-[2,4-bis(acetylamino)-2,4,6-trideoxy-beta-D-glucopyranosyl]-L-asparagine","type":"exact"},{"name":"N4-[N,N-diacetylbacillosaminyl]asparagine","type":"exact"},{"name":"N4-[N2,N4-diacetylbacillosaminyl]asparagine","type":"exact"}],"termid":"MOD:01962"}


id: PBO:0043904
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cysteine rich secretory protein LCCL domain containing 1","termid":"PBO:0043904"}


id: PATO:0005006
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A morphology quality inhering in a bearer by virtue of the bearer's being morphologically distinguishable from another entity.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"morphology","termid":"PATO:0000051"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"differentiated from","synonyms":[{"name":"distinct from","type":"exact"}],"termid":"PATO:0005006"}


id: PBO:0065585
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prothymosin alpha pseudogene 1","termid":"PBO:0065585"}


id: PBO:0070703
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L9 pseudogene 7","termid":"PBO:0070703"}


id: GO:0097695
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a protein-containing macromolecular complex to a specific location in the telomeric region of a chromosome.","definition_xrefs":["PMID:26586433","GOC:BHF","GOC:BHF_telomere","GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex localization","termid":"GO:0031503"},{"relation_name":"is_a","term_name":"establishment of localization","termid":"GO:0051234"},{"relation_name":"part_of","term_name":"cellular macromolecule localization","termid":"GO:0070727"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"establishment of protein-containing complex localization to telomere","synonyms":[{"name":"establishment of macromolecular complex localisation to telomere","type":"exact"},{"name":"establishment of macromolecular complex localization to telomere","type":"related"}],"termid":"GO:0097695"}


id: PBO:0029254
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_negative_regulation_of_DNA_replication_during_cellular_response_to_hydrogen_peroxide","termid":"PBO:0029254"}


id: GO:0042153
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binding to proteins with similar structure/function to receptor protein tyrosine phosphatases.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete RPTP-like protein binding (obsolete GO:0042153)","synonyms":[{"name":"RPTP-like protein binding","type":"exact"},{"name":"receptor protein tyrosine phosphatase-like protein binding","type":"exact"}],"termid":"GO:0042153"}


id: PBO:0052186
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium two pore domain channel subfamily K member 18","termid":"PBO:0052186"}


id: PBO:0056708
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator of cell motility 1","termid":"PBO:0056708"}


id: PBO:0087483
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of cleavage factor I; cleavage factor I is a five-subunit complex required for the cleavage and polyadenylation of pre-mRNA 3' ends; RRM-containing heteronuclear RNA binding protein and hnRNPA/B family member that binds to poly (A) signal sequences; required for genome stability; plays a role in copper homeostasis","termid":"PBO:0087483"}


id: PBO:0039210
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aldo-keto reductase family 1 member C1","termid":"PBO:0039210"}


id: PBO:0043563
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collagen type VI alpha 2 chain","termid":"PBO:0043563"}


id: PBO:0081413
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 266","termid":"PBO:0081413"}


id: RO:0002131
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"x overlaps y if and only if there exists some z such that x has part z and z part of y","direct_ancestors":[{"relation_name":"is_a","term_name":"mereotopologically_related_to","termid":"RO:0002323"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"overlaps","termid":"RO:0002131"}


id: PBO:0075441
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secreted protein acidic and cysteine rich","termid":"PBO:0075441"}


id: PBO:0045203
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DnaJ heat shock protein family (Hsp40) member B13","termid":"PBO:0045203"}


id: PBO:0071289
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L26 pseudogene 12","termid":"PBO:0071289"}


id: GO:0015355
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the movement of a monocarboxylate, any compound containing a single carboxyl group (COOH or COO-), by uniport, symport or antiport across a membrane by a carrier-mediated mechanism.","definition_xrefs":["GOC:bf","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid transmembrane transporter activity","termid":"GO:0008028"},{"relation_name":"is_a","term_name":"secondary active transmembrane transporter activity","termid":"GO:0015291"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"secondary active monocarboxylate transmembrane transporter activity","synonyms":[{"name":"monocarboxylate porter activity","type":"related"}],"termid":"GO:0015355"}


id: PBO:0046837
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fatty acid binding protein 5 pseudogene 10","termid":"PBO:0046837"}


id: GO:0030626
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a U12 small nuclear RNA (U12 snRNA).","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"snRNA binding","termid":"GO:0017069"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003723"}],"interesting_parent_ids":["GO:0003674","GO:0003723","GO:0005488"],"is_obsolete":false,"name":"U12 snRNA binding","termid":"GO:0030626"}


id: PBO:0036468
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial F1-F0 ATPase synthase peripheral stalk assembly factor Ina17 (predicted)","termid":"PBO:0036468"}


id: GO:0047571
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a 3-oxosteroid + acceptor = a 3-oxo-D1-steroid + reduced acceptor.","definition_xrefs":["EC:1.3.99.4","MetaCyc:3-OXOSTEROID-1-DEHYDROGENASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid dehydrogenase activity, acting on the CH-CH group of donors","termid":"GO:0033765"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"3-oxosteroid 1-dehydrogenase activity","secondary_identifiers":["RHEA:13329"],"synonyms":[{"name":"1-ene-dehydrogenase activity","type":"related"},{"name":"3-ketosteroid-1-en-dehydrogenase activity","type":"related"},{"name":"3-ketosteroid-delta1-dehydrogenase activity","type":"related"},{"name":"3-oxosteroid delta1-dehydrogenase activity","type":"related"},{"name":"3-oxosteroid:(2,6-dichlorphenolindophenol) delta1-oxidoreductase activity","type":"related"},{"name":"3-oxosteroid:(acceptor) delta1-oxidoreductase activity","type":"related"},{"name":"3-oxosteroid:acceptor delta1-oxidoreductase activity","type":"related"},{"name":"4-en-3-oxosteroid:(acceptor)-1-en-oxido-reductase activity","type":"related"},{"name":"delta1-dehydrogenase activity","type":"related"},{"name":"delta1-steroid reductase activity","type":"related"}],"termid":"GO:0047571"}


id: SO:0000984
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"When a nucleotide polymer has only one strand.","direct_ancestors":[{"relation_name":"is_a","term_name":"strand_attribute","termid":"SO:0000983"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"single","termid":"SO:0000984"}


id: GO:0052519
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which an organism activates, maintains or increases the frequency, rate or extent of the release of nutrients from a symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation of nutrient release by symbiont","termid":"GO:0052460"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of nutrient release by symbiont","synonyms":[{"name":"activation by host of nutrient release from symbiont","type":"narrow"},{"name":"positive regulation by host of nutrient release from symbiont","type":"exact"},{"name":"promotion of nutrient release from symbiont","type":"exact"},{"name":"stimulation by host of nutrient release from symbiont","type":"narrow"},{"name":"up regulation by host of nutrient release from symbiont","type":"exact"},{"name":"up-regulation by host of nutrient release from symbiont","type":"exact"},{"name":"upregulation by host of nutrient release from symbiont","type":"exact"}],"termid":"GO:0052519"}


id: PATO:0001817
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A fatigability which is relatively low.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"decreased strength","termid":"PATO:0001779"},{"relation_name":"is_a","term_name":"fatigability","termid":"PATO:0001815"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased fatigability","synonyms":[{"name":"low fatigability","type":"exact"}],"termid":"PATO:0001817"}


id: PBO:0041688
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium binding and coiled-coil domain 1","termid":"PBO:0041688"}


id: GO:0047163
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3,4-dichloroaniline + malonyl-CoA = N-(3,4-dichlorophenyl)malonamate + CoA.","definition_xrefs":["EC:2.3.1.114","RHEA:21060"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-malonyltransferase activity","termid":"GO:0050735"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016746","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"3,4-dichloroaniline N-malonyltransferase activity","secondary_identifiers":["KEGG_REACTION:R04050","MetaCyc:2.3.1.114-RXN"],"synonyms":[{"name":"malonyl-CoA:3,4-dichloroaniline N-malonyltransferase activity","type":"related"}],"termid":"GO:0047163"}


id: PBO:0091352
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-protein ligase E3 involved in cytoplasmic translational termination","termid":"PBO:0091352"}


id: PBO:0001638
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat protein involved in autophagy Atg18b","termid":"PBO:0001638"}


id: GO:0004079
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: ATP + biotin + apo-(methylmalonyl-CoA:pyruvate carboxytransferase) = AMP + diphosphate + (methylmalonyl-CoA:pyruvate carboxytransferase).","definition_xrefs":["GOC:rynl"],"gene_count":0,"genotype_count":0,"name":"obsolete biotin-[methylmalonyl-CoA-carboxytransferase] ligase activity (obsolete GO:0004079)","synonyms":[{"name":"biotin-[methylmalonyl-CoA-carboxyltransferase] ligase activity","type":"exact"}],"termid":"GO:0004079"}


id: GO:0042439
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving ethanolamine (2-aminoethanol) and compounds derived from it.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alcohol metabolic process","termid":"GO:0006066"},{"relation_name":"is_a","term_name":"biogenic amine metabolic process","termid":"GO:0006576"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"ethanolamine-containing compound metabolic process","synonyms":[{"name":"ethanolamine and derivative metabolic process","type":"exact"},{"name":"ethanolamine and derivative metabolism","type":"exact"},{"name":"ethanolamine-containing compound metabolism","type":"exact"}],"termid":"GO:0042439"}


id: PBO:0048650
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gap junction protein gamma 3","termid":"PBO:0048650"}


id: PBO:0030628
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cell_population_growth_on_trehalose_carbon_source","termid":"PBO:0030628"}


id: PR:O42934
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- chp2 gene.","definition_xrefs":["UniProtKB:O42934","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromo domain-containing protein 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16C6.10","synonyms":[{"name":"Spom972h-chp2","type":"exact"}],"termid":"PR:O42934"}


id: PBO:0074420
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small integral membrane protein 19","termid":"PBO:0074420"}


id: GO:0010108
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of events in which a glutamine stimulus is received by a cell and converted into a molecular signal.","definition_xrefs":["GOC:sm"],"gene_count":0,"genotype_count":0,"name":"obsolete detection of glutamine (obsolete GO:0010108)","synonyms":[{"name":"glutamine detection","type":"exact"},{"name":"glutamine perception","type":"related"},{"name":"glutamine sensing","type":"related"}],"termid":"GO:0010108"}


id: GO:0045451
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which oskar mRNA is transported to, or maintained in, the oocyte pole plasm.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pole plasm mRNA localization","termid":"GO:0019094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"pole plasm oskar mRNA localization","synonyms":[{"name":"establishment and maintenance of oskar mRNA localization in pole plasm","type":"exact"},{"name":"establishment and maintenance of pole plasm oskar mRNA localization","type":"exact"},{"name":"oocyte pole plasm oskar mRNA localization","type":"exact"},{"name":"pole plasm oskar mRNA localisation","type":"exact"}],"termid":"GO:0045451"}


id: GO:0061329
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a Malpighian tubule principal cell. A Malpighian tubule principal cell is an epithelial secretory cell that transports cations into the lumen of the tubule.","definition_xrefs":["GOC:dph","PMID:19783135","GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell differentiation","termid":"GO:0030855"},{"relation_name":"part_of","term_name":"Malpighian tubule development","termid":"GO:0072002"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Malpighian tubule principal cell differentiation","termid":"GO:0061329"}


id: PBO:0028795
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_chromatin_binding_at_mating-type_region_replication_fork_barrier","termid":"PBO:0028795"}


id: PBO:0042797
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CEP250 antisense RNA 1","termid":"PBO:0042797"}


id: MONDO:0019983
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"kidney neoplasm","termid":"MONDO:0021163"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"multiloculated renal cyst","secondary_identifiers":["Orphanet:97366","UMLS:C0431719","NANDO:2200171","GARD:19376","MEDGEN:609113","SCTID:86463003"],"synonyms":[{"name":"multilocular cyst of the kidney","type":"exact"},{"name":"multilocular renal cyst","type":"exact"}],"termid":"MONDO:0019983","xrefs":{"Monarch":{"xref_id":"0019983"}}}


id: GO:0009874
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A mechanism that functions to prevent self-fertilization in flowering plants that is determined by the diploid genotype of the parent plant. In sporophytic incompatibility the pollen does not germinate, consequently fertilization does not take place.","definition_xrefs":["ISBN:0387987819"],"gene_count":0,"genotype_count":0,"name":"obsolete sporophytic self-incompatibility (obsolete GO:0009874)","synonyms":[{"name":"sporophytic self-incompatibility","type":"exact"}],"termid":"GO:0009874"}


id: PBO:0051438
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin lambda variable 3-22","termid":"PBO:0051438"}


id: GO:0032356
data:
  {"annotated_genes":["SJAG_02261"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[73968],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032357"}]},"cv_name":"molecular_function","definition":"Binding to a DNA region containing an oxidized residue.","definition_xrefs":["GOC:vk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"damaged DNA binding","termid":"GO:0003684"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02261":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003677"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003677","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"oxidized DNA binding","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"oxidised DNA binding","type":"exact"}],"termid":"GO:0032356","terms_by_termid":{"GO:0032357":null}}


id: PBO:0002255
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pre-Trna Accumulation","termid":"PBO:0002255"}


id: GO:0072532
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the meta-hydroxylation of any of the three phenolic rings on triferuloyl spermidine or any of its mono- or di-(hydroxyferuloyl)-spermidine derivatives.","definition_xrefs":["PMID:19779199","GOC:kad"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"tri-(feruloyl or hydroxyferuloyl) spermidine meta-hydroxylase activity","termid":"GO:0072532"}


id: GO:0160186
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and stops, prevents or reduces the activity of the enzyme phospholipase C.","definition_xrefs":["PMID:28130414"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipase inhibitor activity","termid":"GO:0004859"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0004857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0140678"}],"interesting_parent_ids":["GO:0098772","GO:0003674","GO:0140678","GO:0004857","GO:0030234"],"is_obsolete":false,"name":"phospholipase C inhibitor activity","termid":"GO:0160186"}


id: PBO:0055360
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2789","termid":"PBO:0055360"}


id: MOD:00749
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes a sulfur atom for an oxygen atom.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur containing modified residue","termid":"MOD:00860"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfur substitution for oxygen","synonyms":[{"name":"S(O)Res","type":"exact"}],"termid":"MOD:00749"}


id: PATO:0000951
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A color that falls about midway between red and blue in hue.","definition_xrefs":["Dictionary:http://dictionary.reference.com/"],"direct_ancestors":[{"relation_name":"is_a","term_name":"color","termid":"PATO:0000014"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"purple","termid":"PATO:0000951"}


id: GO:0100032
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any transcription from RNA polymerase II promoter process that positively regulates phospholipid biosynthetic process.","definition_xrefs":["GOC:cjm","GOC:obol"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of phospholipid biosynthetic process by transcription from RNA polymerase II promoter (obsolete GO:0100032)","termid":"GO:0100032"}


id: PR:Q9Y7U3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- gep4 gene.","definition_xrefs":["UniProtKB:Q9Y7U3","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylglycerophosphatase, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC645.02","synonyms":[{"name":"PGP phosphatase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-gep4","type":"exact"}],"termid":"PR:Q9Y7U3"}


id: MONDO:0009319
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pantothenate kinase-associated neurodegeneration (PKAN) is the most common type of neurodegeneration with brain iron accumulation (NBIA), a rare neurodegenerative disorder characterized by progressive extrapyramidal dysfunction (dystonia, rigidity, choreoathetosis), iron accumulation on the brain and axonal spheroids in the central nervous system.","definition_xrefs":["Orphanet:157850"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuroacanthocytosis","termid":"MONDO:0016987"},{"relation_name":"is_a","term_name":"disorder of phospholipids, sphingolipids and fatty acids biosynthesis","termid":"MONDO:0018117"},{"relation_name":"is_a","term_name":"neurodegeneration with brain iron accumulation","termid":"MONDO:0018307"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0002039"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0002525","MONDO:0005066","MONDO:0002039","MONDO:0005559"],"is_obsolete":false,"name":"pantothenate kinase-associated neurodegeneration","secondary_identifiers":["ICD9:333.0","NANDO:1200534","GARD:6564","MEDGEN:6708","MESH:D006211","OMIM:234200","SCTID:2992000","NANDO:2200886","NCIT:C84988","DOID:3981","UMLS:C0018523"],"synonyms":[{"name":"Hallervorden-Spatz disease","type":"exact"},{"name":"Hallervorden-Spatz syndrome","type":"exact"},{"name":"NBIA1","type":"exact"},{"name":"PKAN","type":"exact"},{"name":"Pkan neuroaxonal dystrophy, juvenile-onset","type":"related"},{"name":"brain iron accumulation type I syndrome","type":"broad"},{"name":"neuroaxonal dystrophy, late infantile","type":"related"},{"name":"neurodegeneration with brain iron accumulation 1","type":"exact"},{"name":"neurodegeneration with brain iron accumulation type 1","type":"exact"},{"name":"pantothenate kinase-associated neurodegeneration","type":"exact"},{"name":"pigmentary pallidal degeneration","type":"exact"}],"termid":"MONDO:0009319","xrefs":{"Monarch":{"xref_id":"0009319"}}}


id: GO:0015307
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: H+(out) + drug(in) = H+(in) + drug(out).","definition_xrefs":["TC:2.A.1.3.-","TC:2.A.1.2.-"],"gene_count":0,"genotype_count":0,"name":"obsolete drug:proton antiporter activity (obsolete GO:0015307)","synonyms":[{"name":"carbonyl cyanide m-chlorophenylhydrazone/nalidixic acid/organomercurials:hydrogen antiporter activity","type":"narrow"},{"name":"drug:hydrogen antiporter activity","type":"exact"}],"termid":"GO:0015307"}


id: PBO:0070743
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L10a pseudogene 13","termid":"PBO:0070743"}


id: PBO:0042115
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 187","termid":"PBO:0042115"}


id: PR:O94426
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC660.06 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94426"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WW domain-containing protein C660.06 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC660.06","synonyms":[{"name":"Spom972h-SPBC660.06","type":"exact"}],"termid":"PR:O94426"}


id: PBO:0058533
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6078","termid":"PBO:0058533"}


id: PBO:0072011
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S7 pseudogene 13","termid":"PBO:0072011"}


id: PBO:0003069
data:
  {"annotation_feature_type":"gene","cv_name":"DNA_binding_specificity","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"binds rDIS 5'-AGGTAAGGGTAATGCAC-3'","termid":"PBO:0003069"}


id: PBO:0080139
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VASH1 divergent transcript","termid":"PBO:0080139"}


id: PBO:0040039
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acidic residue methyltransferase 1","termid":"PBO:0040039"}


id: PBO:0039618
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ANXA2R antisense RNA 1","termid":"PBO:0039618"}


id: PBO:0047595
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fumarate hydratase","termid":"PBO:0047595"}


id: PBO:0079913
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 pseudogene 3","termid":"PBO:0079913"}


id: PBO:0038378
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_epiphyte","termid":"PBO:0038378"}


id: PBO:0072457
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S29 pseudogene 21","termid":"PBO:0072457"}


id: MONDO:0003152
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"adult brainstem glioma","termid":"MONDO:0003153"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"adult brainstem gliosarcoma","secondary_identifiers":["MEDGEN:277992","UMLS:C1377914","DOID:4812","NCIT:C9370"],"synonyms":[{"name":"adult brain stem gliosarcoma","type":"exact"},{"name":"adult brainstem gliosarcoma","type":"exact"}],"termid":"MONDO:0003152","xrefs":{"Monarch":{"xref_id":"0003152"}}}


id: PBO:0051720
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"INSM transcriptional repressor 1","termid":"PBO:0051720"}


id: PBO:0085031
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Non-ATPase regulatory subunit of the 26S proteasome; similar to putative proteasomal subunits in other species; null mutant is temperature sensitive and exhibits cell cycle and proteasome assembly defects; protein abundance increases in response to DNA replication stress; relocalizes to the cytosol in response to hypoxia","termid":"PBO:0085031"}


id: PBO:0056559
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"minichromosome maintenance complex component 7","termid":"PBO:0056559"}


id: PBO:0056031
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lymphotoxin alpha","termid":"PBO:0056031"}


id: PBO:0061992
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily C member 3","termid":"PBO:0061992"}


id: MONDO:0011416
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A generalized epilepsy with febrile seizures plus that has material basis in heterozygous mutation in SCN1B on chromosome 19q13.11.","definition_xrefs":["DOID:0111302"],"direct_ancestors":[{"relation_name":"is_a","term_name":"generalized epilepsy with febrile seizures plus","termid":"MONDO:0018214"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"generalized epilepsy with febrile seizures plus, type 1","secondary_identifiers":["OMIM:604233","GARD:18659","MEDGEN:348994","MESH:C565809","UMLS:C1858672"],"synonyms":[{"name":"GEFSP1","type":"related"},{"name":"Gefs+, type 1","type":"related"},{"name":"generalized epilepsy with febrile seizures plus, type 1","type":"exact"}],"termid":"MONDO:0011416","xrefs":{"Monarch":{"xref_id":"0011416"}}}


id: PBO:0063405
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PDCL3 pseudogene 1","termid":"PBO:0063405"}


id: GO:0016552
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The insertion into or deletion from an RNA molecule of nucleotide residues not encoded in DNA; takes place during transcription.","definition_xrefs":["PMID:11092837"],"gene_count":0,"genotype_count":0,"name":"obsolete cotranscriptional insertion or deletion editing (obsolete GO:0016552)","synonyms":[{"name":"cotranscriptional insertion or deletion editing","type":"exact"},{"name":"cotranscriptional insertion/deletion editing","type":"exact"}],"termid":"GO:0016552"}


id: PBO:0110231
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rixosome complex WD repeat subunit Crb3","termid":"PBO:0110231"}


id: MONDO:0032810
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited oocyte maturation defect","termid":"MONDO:0014769"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"oocyte maturation defect 7","secondary_identifiers":["OMIM:618550","UMLS:C5231407","MEDGEN:1684736"],"synonyms":[{"name":"OOCYTE MATURATION DEFECT 7","type":"related"},{"name":"OOMD7","type":"related"}],"termid":"MONDO:0032810","xrefs":{"Monarch":{"xref_id":"0032810"}}}


id: PR:Q10208
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A pyruvate kinase I that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyruvate kinase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC4H3.10c","secondary_identifiers":["UniProtKB:Q10208"],"synonyms":[{"name":"PK (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SPAC4H3.10c","type":"related"},{"name":"Spom972h-pykF","type":"exact"}],"termid":"PR:Q10208"}


id: MONDO:0017975
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital conditions of atypical sexual development associated with abnormal sex chromosome constitutions including monosomy; trisomy; and mosaicism.","definition_xrefs":["MESH:D058533"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disorder of sexual differentiation","termid":"MONDO:0002145"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sex chromosome disorder of sex development","secondary_identifiers":["Orphanet:325546","UMLS:C2936421","MEDGEN:423530"],"synonyms":[{"name":"Sex chromosome DSD","type":"exact"}],"termid":"MONDO:0017975","xrefs":{"Monarch":{"xref_id":"0017975"}}}


id: PBO:0074586
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 3B","termid":"PBO:0074586"}


id: PR:Q10077
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- snt2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10077"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lid2 complex component snt2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3H1.12c","synonyms":[{"name":"Lid2C component snt2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-snt2","type":"exact"}],"termid":"PR:Q10077"}


id: FYPO:0008026
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed during mitotic M-phase in which the localization of a protein to CENP-A containing chromatin is increased.","definition_xrefs":["PMID:35970865","PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein localization to CENP-A containing chromatin","termid":"FYPO:0007295"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000138","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"increased protein localization to CENP-A containing chromatin during mitosis","synonyms":[{"name":"increased protein localisation to CENP-A containing chromatin during mitosis","type":"exact"},{"name":"increased protein localisation to CENP-A containing chromatin during mitotic M-phase","type":"exact"},{"name":"increased protein localization to centromeric core region chromatin during mitosis","type":"exact"}],"termid":"FYPO:0008026"}


id: GO:0000947
data:
  {"annotated_genes":["SJAG_02734","SJAG_03743","SJAG_04842"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71577,71934,74251],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000949"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving the catabolism of amino acids to produce alcohols with one carbon less than the starting amino acid. In S. cerevisiae, this is known to occur for leucine, isoleucine, valine, methionine, phenylalanine, tyrosine, or tryptophan. Often referred to as the Ehrlich pathway, these reactions generally occur during fermentation to produce a variety of alcohols, often collectively referred to as fusel alcohols. Depending on the redox state of the cells, carboxylic acid derivatives may be produced instead of alcohols.","definition_xrefs":["GOC:krc","PMID:18281432"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid catabolic process via Ehrlich pathway","termid":"GO:0000955"},{"relation_name":"is_a","term_name":"alcohol biosynthetic process","termid":"GO:0046165"}],"gene_count":3,"genes_by_uniquename":{"SJAG_02734":null,"SJAG_03743":null,"SJAG_04842":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0006520","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"amino acid catabolic process to alcohol via Ehrlich pathway","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0000947","terms_by_termid":{"GO:0000949":null}}


id: MONDO:0005428
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete pemphigus vulgaris (obsolete MONDO:0005428)","termid":"MONDO:0005428","xrefs":{"Monarch":{"xref_id":"0005428"}}}


id: GO:0003743
data:
  {"annotated_genes":["SJAG_03433","SJAG_01487","SJAG_02390","SJAG_01117","SJAG_02164","SJAG_01954","SJAG_03732","SJAG_04900","SJAG_04981","SJAG_04772","SJAG_00466","SJAG_04744","SJAG_03147","SJAG_02307","SJAG_04635","SJAG_03472","SJAG_00507","SJAG_02628","SJAG_04891","SJAG_00786","SJAG_02856","SJAG_05003","SJAG_02376","SJAG_03678","SJAG_03223","SJAG_03996","SJAG_03629","SJAG_01659","SJAG_02471","SJAG_03788","SJAG_00662","SJAG_02995","SJAG_01576","SJAG_01643"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[58179,59636,60564,61451,62095,63978,68830,71813,72016,72297,72318,72637,72786,72799,74296,74482,74725,74873,75194,75469,76034,76931,77823,77827,78011,78316,78870,79367,80482,87877,93135,105961,105986,116011],"is_not":false,"summary":null,"term":"GO:0003743"}]},"cv_name":"molecular_function","definition":"Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"translation factor activity","termid":"GO:0180051"}],"gene_count":34,"genes_by_uniquename":{"SJAG_00466":null,"SJAG_00507":null,"SJAG_00662":null,"SJAG_00786":null,"SJAG_01117":null,"SJAG_01487":null,"SJAG_01576":null,"SJAG_01643":null,"SJAG_01659":null,"SJAG_01954":null,"SJAG_02164":null,"SJAG_02307":null,"SJAG_02376":null,"SJAG_02390":null,"SJAG_02471":null,"SJAG_02628":null,"SJAG_02856":null,"SJAG_02995":null,"SJAG_03147":null,"SJAG_03223":null,"SJAG_03433":null,"SJAG_03472":null,"SJAG_03629":null,"SJAG_03678":null,"SJAG_03732":null,"SJAG_03788":null,"SJAG_03996":null,"SJAG_04635":null,"SJAG_04744":null,"SJAG_04772":null,"SJAG_04891":null,"SJAG_04900":null,"SJAG_04981":null,"SJAG_05003":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674"],"is_obsolete":false,"name":"translation initiation factor activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-72621","GO:0003745","Reactome:R-HSA-72722","GO:0003744","Reactome:R-HSA-72697"],"termid":"GO:0003743","terms_by_termid":{"GO:0003743":null}}


id: PBO:0078299
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Asp (anticodon GTC) 2-4","termid":"PBO:0078299"}


id: GO:0030478
data:
  {"annotated_genes":["SJAG_04624"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[89719],"is_not":false,"summary":null,"term":"GO:0030478"}]},"cv_name":"cellular_component","definition":"Polarized accumulation of cytoskeletal proteins (including F-actin) and regulatory proteins in a cell. An example of this is the actin cap found in Saccharomyces cerevisiae.","definition_xrefs":["PMID:21494665","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"cortical actin cytoskeleton","termid":"GO:0030864"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04624":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005938"},{"rel_name":"part_of","termid":"GO:0015629"}],"interesting_parent_ids":["GO:0005575","GO:0015629","GO:0005938","GO:0005737"],"is_obsolete":false,"name":"actin cap","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0000143"],"termid":"GO:0030478","terms_by_termid":{"GO:0030478":null}}


id: PBO:0069215
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 470, pseudogene","termid":"PBO:0069215"}


id: PBO:0043671
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"corin, serine peptidase","termid":"PBO:0043671"}


id: MONDO:0015745
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Microcephaly-polymicrogyria-corpus callosum agenesis syndrome is a rare, genetic, central nervous system malformation syndrome characterized by marked prenatal-onset microcephaly, severe motor delay with hypotonia, bilateral polymicrogyria, corpus callosum agenesis, ventricular dilation, small cerebellum and early lethality.","definition_xrefs":["Orphanet:171703"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microcephaly-polymicrogyria-corpus callosum agenesis syndrome","secondary_identifiers":["MEDGEN:1653942","UMLS:C4750772","GARD:20125"],"termid":"MONDO:0015745","xrefs":{"Monarch":{"xref_id":"0015745"}}}


id: PBO:0088620
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleotide pyrophosphatase Npp1","termid":"PBO:0088620"}


id: FYPO:0005997
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of any small nuclear RNA (snRNA) primary transcript, snRNA precursor or processing intermediate, or mature snRNA measured in a cell differs from normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered RNA level during vegetative growth","termid":"FYPO:0001326"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0006551","FYPO:0000002","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"altered snRNA or precursor level","synonyms":[{"name":"abnormal snRNA or precursor level","type":"exact"},{"name":"altered snRNA or precursor accumulation","type":"related"},{"name":"altered snRNA or precursor level during mitotic cell cycle","type":"related"},{"name":"altered snRNA or precursor level during vegetative growth","type":"exact"},{"name":"altered snRNA or precursor transcript level","type":"exact"}],"termid":"FYPO:0005997"}


id: PBO:0005229
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sad1 interacting factor 2 (predicted)","termid":"PBO:0005229"}


id: PBO:0043571
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collagen type VIII alpha 1 chain","termid":"PBO:0043571"}


id: GO:0016068
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An inflammatory response driven by antigen recognition by antibodies bound to Fc receptors on mast cells or basophils, occurring within minutes after exposure of a sensitized individual to the antigen, and leading to the release of a variety of inflammatory mediators such as histamines.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hypersensitivity","termid":"GO:0002524"},{"relation_name":"is_a","term_name":"immunoglobulin mediated immune response","termid":"GO:0016064"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"type I hypersensitivity","secondary_identifiers":["Wikipedia:Type_I_hypersensitivity"],"synonyms":[{"name":"immediate hypersensitivity response","type":"exact"}],"termid":"GO:0016068"}


id: PBO:0050030
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major histocompatibility complex, class II, DQ beta 2","termid":"PBO:0050030"}


id: MONDO:0003328
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign neoplasm that arises from the fallopian tube and originates from mesothelial cells. It is characterized by the presence of gland-like structures that are lined by flat or cuboidal cells. It is usually discovered as an incidental finding.","definition_xrefs":["NCIT:C40129"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fallopian tube benign neoplasm","termid":"MONDO:0000645"},{"relation_name":"is_a","term_name":"benign mesothelioma","termid":"MONDO:0002373"},{"relation_name":"is_a","term_name":"adenomatoid tumor","termid":"MONDO:0004230"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fallopian tube adenomatoid tumor","secondary_identifiers":["MEDGEN:273291","DOID:5196","UMLS:C1517110"],"synonyms":[{"name":"fallopian tube adenomatoid tumor","type":"exact"}],"termid":"MONDO:0003328","xrefs":{"Monarch":{"xref_id":"0003328"}}}


id: MONDO:1040044
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any ciliopathy caused by variants in the BBS4 gene.","definition_xrefs":["PMID:11381270","PMID:15654695"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ciliopathy","termid":"MONDO:0005308"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BBS4-related ciliopathy","synonyms":[{"name":"BBS4-related ciliopathy","type":"exact"}],"termid":"MONDO:1040044","xrefs":{"Monarch":{"xref_id":"1040044"}}}


id: GO:0046719
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any virus-mediated process that modulates the levels of viral proteins in a cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of viral process","termid":"GO:0050792"},{"relation_name":"is_a","term_name":"regulation of biological quality","termid":"GO:0065008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation by virus of viral protein levels in host cell","synonyms":[{"name":"regulation of viral protein levels","type":"exact"}],"termid":"GO:0046719"}


id: PBO:0063674
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piggyBac transposable element derived 3 pseudogene 3","termid":"PBO:0063674"}


id: SO:0001248
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region of the genome of known length that is composed by ordering and aligning two or more different regions.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"experimental_feature","termid":"SO:0001410"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"assembly","secondary_identifiers":["http://en.wikipedia.org/wiki/Genome_assembly#Genome_assembly"],"termid":"SO:0001248"}


id: PBO:0049190
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamate ionotropic receptor AMPA type subunit 1","termid":"PBO:0049190"}


id: GO:0061838
data:
  {"annotated_genes":["SJAG_05321","SJAG_00935","SJAG_02465","SJAG_02513"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[91133,108523,112566,117831],"is_not":false,"summary":null,"term":"GO:0061838"}]},"cv_name":"cellular_component","definition":"A histone-variant containing protein complex which forms a centromere specific nucleosome-like structure, involved in centromeric chromatin organization.","definition_xrefs":["PMID:22304917","PMID:22304909"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"},{"relation_name":"part_of","term_name":"chromosome, centromeric region","termid":"GO:0000775"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00935":null,"SJAG_02465":null,"SJAG_02513":null,"SJAG_05321":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"part_of","termid":"GO:0005694"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005634","GO:0005694"],"is_obsolete":false,"name":"CENP-T-W-S-X complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0061838","terms_by_termid":{"GO:0061838":null}}


id: GO:1904975
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a bleomycin stimulus.","definition_xrefs":["PMID:11553781","GOC:TermGenie","GO_REF:0000071"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to nitrogen compound","termid":"GO:1901698"},{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to bleomycin","termid":"GO:1904975"}


id: GO:0140282
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-glutamine + lipid II + ATP + H2O = L-glutamate + beta-D-GlcNAc(1->4)-Mur2Ac(oyl-L-Ala-D-isoGln-L-Lys-D-Ala-D-Ala)-diphospho-di-trans,octa-cis-undecaprenol + ADP + phosphate.","definition_xrefs":["RHEA:57928","PMID:30154570","PMID:22291598","PMID:30093673"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-nitrogen ligase activity, with glutamine as amido-N-donor","termid":"GO:0016884"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016874","GO:0003674"],"is_obsolete":false,"name":"carbon-nitrogen ligase activity on lipid II","secondary_identifiers":["EC:6.3.5.13"],"synonyms":[{"name":"L-glutamate--lipid II transaminase activity","type":"exact"},{"name":"undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl pentapeptide amidotransferase (glutamine-hydrolyzing) activity","type":"exact"}],"termid":"GO:0140282"}


id: MONDO:0006587
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete nodular nonsuppurative panniculitis (obsolete MONDO:0006587)","termid":"MONDO:0006587","xrefs":{"Monarch":{"xref_id":"0006587"}}}


id: PBO:0047500
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"flap structure-specific endonuclease 1 pseudogene 1","termid":"PBO:0047500"}


id: GO:0072239
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The biological process whose specific outcome is the progression of a metanephric glomerulus vasculature from an initial condition to its mature state. This process begins with the formation of the metanephric glomerulus vasculature and ends with the mature structure. The metanephric glomerulus vasculature is composed of the tubule structures that carry blood or lymph in the metanephric glomerulus.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glomerulus vasculature development","termid":"GO:0072012"},{"relation_name":"part_of","term_name":"metanephric glomerulus development","termid":"GO:0072224"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric glomerulus vasculature development","synonyms":[{"name":"glomerulus capillary development","type":"related"}],"termid":"GO:0072239"}


id: PR:O94685
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A RalBP1-associated Eps domain-containing protein 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02896","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBA domain-containing protein 8 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC83.01","secondary_identifiers":["UniProtKB:O94685"],"synonyms":[{"name":"Spom972h-REPS1","type":"exact"}],"termid":"PR:O94685"}


id: PBO:0045055
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deleted in lymphocytic leukemia 2 like","termid":"PBO:0045055"}


id: GO:0022904
data:
  {"annotated_genes":["SJAG_00260","SJAG_MIT20","SJAG_03920","SJAG_00755","SJAG_MIT03","SJAG_07007","SJAG_01490","SJAG_02744","SJAG_00976","SJAG_04152","SJAG_02398","SJAG_00080","SJAG_01190","SJAG_01763","SJAG_02504","SJAG_02646","SJAG_01355","SJAG_MIT04","SJAG_MIT13","SJAG_00601","SJAG_01077","SJAG_05629","SJAG_01671","SJAG_07006","SJAG_03490"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[74670,115850,76648,108664,79226,114616,115046,72409,119425,119447,119475],"is_not":false,"rel_names":["part_of","is_a"],"summary":null,"term":"GO:0006123"},{"annotations":[113245],"is_not":false,"rel_names":["part_of","is_a"],"summary":null,"term":"GO:0006120"},{"annotations":[89541,89171,117149,113584],"is_not":false,"rel_names":["is_a","part_of"],"summary":null,"term":"GO:0006121"},{"annotations":[74086,113791,104440,76204,61927,72481,76051,76647,118076,119452],"is_not":false,"rel_names":["is_a","part_of"],"summary":null,"term":"GO:0006122"}]},"cv_name":"biological_process","definition":"A process in which a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.","definition_xrefs":["GOC:mtg_electron_transport","ISBN:0716720094"],"direct_ancestors":[{"relation_name":"is_a","term_name":"electron transport chain","termid":"GO:0022900"},{"relation_name":"part_of","term_name":"cellular respiration","termid":"GO:0045333"}],"gene_count":25,"genes_by_uniquename":{"SJAG_00080":null,"SJAG_00260":null,"SJAG_00601":null,"SJAG_00755":null,"SJAG_00976":null,"SJAG_01077":null,"SJAG_01190":null,"SJAG_01355":null,"SJAG_01490":null,"SJAG_01671":null,"SJAG_01763":null,"SJAG_02398":null,"SJAG_02504":null,"SJAG_02646":null,"SJAG_02744":null,"SJAG_03490":null,"SJAG_03920":null,"SJAG_04152":null,"SJAG_05629":null,"SJAG_07006":null,"SJAG_07007":null,"SJAG_MIT03":null,"SJAG_MIT04":null,"SJAG_MIT13":null,"SJAG_MIT20":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0008150","GO:0006091"],"is_obsolete":false,"name":"respiratory electron transport chain","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-611105","Wikipedia:Electron_transfer"],"synonyms":[{"name":"6-phosphofructokinase reduction","type":"related"},{"name":"dihydrobiopterin reduction","type":"related"},{"name":"dihydrolipoamide reduction","type":"related"},{"name":"dihydrolipoylprotein reduction","type":"related"},{"name":"dihydropteridine reduction","type":"related"},{"name":"electron transfer","type":"exact"},{"name":"other pathways of electron transport","type":"related"},{"name":"oxidized glutathione reduction","type":"related"},{"name":"protein-disulfide reduction","type":"related"}],"termid":"GO:0022904","terms_by_termid":{"GO:0006120":null,"GO:0006121":null,"GO:0006122":null,"GO:0006123":null}}


id: PBO:0062343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 6 subfamily K member 2","termid":"PBO:0062343"}


id: GO:0120078
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules that contributes to the formation of a blood vessel network.","definition_xrefs":["GOC:cvs","PMID:28264837"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell adhesion","termid":"GO:0007155"},{"relation_name":"part_of","term_name":"angiogenic sprout fusion","termid":"GO:0120077"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"cell adhesion involved in sprouting angiogenesis","synonyms":[{"name":"cell adhesion involved in blood vessel anastomosis","type":"exact"},{"name":"cell adhesion involved in vascular anastomosis","type":"related"}],"termid":"GO:0120078"}


id: MONDO:0035461
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete systemic disease with glomerulopathy as a major feature (obsolete MONDO:0035461)","secondary_identifiers":["Orphanet:567554"],"termid":"MONDO:0035461","xrefs":{"Monarch":{"xref_id":"0035461"}}}


id: GO:0071538
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process of protein complex assembly in which the arrangement and bonding together of the set of components that form the protein complex is mediated by an SH2 domain interaction.","definition_xrefs":["GOC:amm"],"gene_count":0,"genotype_count":0,"name":"obsolete SH2 domain-mediated complex assembly (obsolete GO:0071538)","termid":"GO:0071538"}


id: PBO:0042795
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CEP192 divergent transcript","termid":"PBO:0042795"}


id: PBO:0004276
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi transport protein Tvp23 (predicted)","termid":"PBO:0004276"}


id: PBO:0030947
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_mitochondrial_fusion","termid":"PBO:0030947"}


id: PBO:0081034
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger CCCH-type containing 12B","termid":"PBO:0081034"}


id: PBO:0117071
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PALB2 antisense RNA 1","termid":"PBO:0117071"}


id: GO:0102335
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N,N'-diacetyl-alpha-D-bacillosaminyl-diphospho-tri-trans,hepta-cis-undecaprenol + UDP-N-acetyl-D-galactosamine = N-acetyl-D-galactosaminyl-alpha-(1->3)-N,N'-diacetyl-alpha-D-bacillosaminyl-diphospho-tri-trans,hepta-cis-undecaprenol + UDP + H+.","definition_xrefs":["EC:2.4.1.290","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016757","GO:0016740"],"is_obsolete":false,"name":"N,N'-diacetylbacillosaminyl-diphospho-undecaprenol alpha-1,3-N-acetylgalactosaminyltransferase activity","secondary_identifiers":["MetaCyc:RXN-13274","RHEA:34511"],"termid":"GO:0102335"}


id: PBO:0039572
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 66","termid":"PBO:0039572"}


id: GO:0036037
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The change in morphology and behavior of a CD8-positive, alpha-beta T cell resulting from exposure to a mitogen, cytokine, chemokine, cellular ligand, or an antigen for which it is specific.","definition_xrefs":["CL:0000625","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-beta T cell activation","termid":"GO:0046631"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"CD8-positive, alpha-beta T cell activation","termid":"GO:0036037"}


id: PBO:0051027
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"insulin like growth factor binding protein 7","termid":"PBO:0051027"}


id: FYPO:0004221
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which dimethylation of lysine at position 20 of histone H4 is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal histone H4-K20 methylation during vegetative growth","termid":"FYPO:0004219"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000257","FYPO:0001312","FYPO:0000002"],"is_obsolete":false,"name":"normal histone H4-K20 dimethylation during vegetative growth","synonyms":[{"name":"normal histone H4 K20 dimethylation during vegetative growth","type":"exact"},{"name":"normal histone H4-K20 dimethylation during mitotic cell cycle","type":"related"},{"name":"normal histone H4K20me2 during vegetative growth","type":"exact"},{"name":"normal histone lysine H4 K20 dimethylation during vegetative growth","type":"exact"}],"termid":"FYPO:0004221"}


id: MONDO:0000133
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The Immunodeficiency, Centromeric region instability, Facial anomalies syndrome (ICF) is a rare autosomal recessive disease characterized by immunodeficiency, although B cells are present, and by characteristic rearrangements in the vicinity of the centromeres (the juxtacentromeric heterochromatin) of chromosomes 1 and 16 and sometimes 9.","definition_xrefs":["Orphanet:2268"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"telomere syndrome","termid":"MONDO:0100137"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019303"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0019303","MONDO:0006025"],"is_obsolete":false,"name":"immunodeficiency-centromeric instability-facial anomalies syndrome","secondary_identifiers":["SCTID:234633000","UMLS:C0398788","NANDO:1200334","NANDO:2200708","MESH:C537362","GARD:2945","DOID:0090007","MEDGEN:140770","OMIMPS:242860"],"synonyms":[{"name":"CIID","type":"related"},{"name":"ICF syndrome","type":"related"},{"name":"immunodeficiency-centromeric instability-facial anomalies","type":"exact"},{"name":"immunodeficiency-centromeric instability-facial anomalies syndrome","type":"exact"}],"termid":"MONDO:0000133","xrefs":{"Monarch":{"xref_id":"0000133"}}}


id: PBO:0049081
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor 137","termid":"PBO:0049081"}


id: FYPO:0002605
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone H2A phosphorylation occurs to a greater extent than normal at ribosomal DNA during G2 phase of the mitotic cell cycle. All histone H2A phosphorylation may be affected, or phosphorylation of specific sites on histone H2A may be increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H2A phosphorylation at rDNA during vegetative growth","termid":"FYPO:0002604"},{"relation_name":"is_a","term_name":"increased protein phosphorylation during mitotic G2 phase","termid":"FYPO:0004112"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0002274","FYPO:0001320","FYPO:0002494"],"is_obsolete":false,"name":"increased histone H2A phosphorylation at rDNA during mitotic G2 phase","synonyms":[{"name":"increased histone H2A phosphorylation at rDNA during mitotic G2 phase during vegetative growth","type":"exact"},{"name":"increased histone H2A phosphorylation at ribosomal DNA during mitotic G2 phase","type":"exact"}],"termid":"FYPO:0002605"}


id: PBO:0049903
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hes family bHLH transcription factor 4","termid":"PBO:0049903"}


id: FYPO:0002079
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing calcium ions during a cellular hypotonic response.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal growth on calcium","termid":"FYPO:0001020"},{"relation_name":"is_a","term_name":"normal growth during cellular response to osmotic stress","termid":"FYPO:0001021"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0002057","FYPO:0000139","FYPO:0002060","FYPO:0000257","FYPO:0002058"],"is_obsolete":false,"name":"normal growth on calcium during cellular hypotonic response","synonyms":[{"name":"normal cell population growth in presence of calcium ions during cellular hypotonic response","type":"exact"},{"name":"normal cell population growth on calcium during cellular hypotonic response","type":"exact"},{"name":"normal cell population growth on calcium ion during cellular hypoosmotic response","type":"exact"},{"name":"normal cell population growth on calcium ion during cellular hypotonic response","type":"exact"},{"name":"normal cell population growth on excess calcium during cellular hypotonic response","type":"exact"},{"name":"normal cellular response to calcium ion during cellular hypotonic response","type":"related"},{"name":"normal growth on calcium ion during cellular hypotonic response","type":"exact"},{"name":"normal vegetative cell population growth on calcium ion during cellular hypotonic response","type":"exact"}],"termid":"FYPO:0002079"}


id: PBO:0049552
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2B clustered histone 14","termid":"PBO:0049552"}


id: GO:0150163
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process mediated by a microRNA (miRNA) that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.","definition_xrefs":["GOC:aruk","PMID:27145859","PMID:20737563"],"gene_count":0,"genotype_count":0,"name":"obsolete miRNA-mediated activation of transcription by RNA polymerase II (obsolete GO:0150163)","termid":"GO:0150163"}


id: PBO:0061084
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NKX2-2 antisense RNA 1","termid":"PBO:0061084"}


id: MONDO:0007296
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Spinocerebellar ataxia type 31 (SCA31) is a very rare subtype of autosomal dominant cerebellar ataxia type III (ADCA type III) characterized by the late-onset of cerebral ataxia, dysarthria and horizontal gaze nystagmus, and that is occasionally accompanied by pyramidal signs, tremor, decreased vibration sense and hearing difficulties.","definition_xrefs":["Orphanet:217012"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant cerebellar ataxia type III","termid":"MONDO:0019793"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002039"},{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0002039","MONDO:0000426"],"is_obsolete":false,"name":"spinocerebellar ataxia type 31","secondary_identifiers":["icd11.foundation:250956064","SCTID:715826005","DOID:0050980","UMLS:C1861736","NANDO:1200044","NCIT:C176901","MEDGEN:348439","GARD:9975","OMIM:117210","MESH:C566146"],"synonyms":[{"name":"SCA31","type":"exact"},{"name":"spinocerebellar ataxia 16q22-linked","type":"related"},{"name":"spinocerebellar ataxia 31","type":"related"},{"name":"spinocerebellar ataxia type 31","type":"exact"},{"name":"spinocerebellar ataxia, 16Q22-linked","type":"related"}],"termid":"MONDO:0007296","xrefs":{"Monarch":{"xref_id":"0007296"}}}


id: GO:0102056
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 3'-phosphonato-5'-adenylyl sulfate + an 11-hydroxyjasmonate = adenosine 3',5'-bismonophosphate + H+ + an 11-hydroxyjasmonate sulfate.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 11-hydroxyjasmonate sulfotransferase activity (obsolete GO:0102056)","termid":"GO:0102056"}


id: GO:0006668
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving sphinganine-1-phosphate, the phosphorylated derivative of D-erythro-2-amino-1,3-octadecanediol.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipid metabolic process","termid":"GO:0006644"},{"relation_name":"is_a","term_name":"sphingolipid metabolic process","termid":"GO:0006665"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"sphinganine-1-phosphate metabolic process","synonyms":[{"name":"dihydrosphingosine-1-phosphate metabolic process","type":"exact"},{"name":"dihydrosphingosine-1-phosphate metabolism","type":"exact"},{"name":"sphinganine-1-phosphate metabolism","type":"exact"}],"termid":"GO:0006668"}


id: MONDO:0018433
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Acute myeloid leukemia with t(6;9)(p23;q34) is a rare subtype of acute myeloid leukemia with recurrent genetic abnormalities characterized by clonal proliferation of poorly differentiated myeloid blasts in the bone marrow, blood, or other tissues in patients who present the t(6;9)(p23;q34) translocation. Frequently associated with multilineage bone marrow dysplasia, it usually presents with anemia, thrombocytopenia (often pancytopenia), and other nonspecific symptoms related to ineffective hematopoesis (fatigue, bleeding and bruising, recurrent infections, bone pain) and/or extramedullary site involvement (gingivitis, splenomegaly). Basophilia, as well as poor response to chemotherapy, has been reported.","definition_xrefs":["Orphanet:402014"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acute myeloid leukemia","termid":"MONDO:0018874"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046","MONDO:0004992"],"is_obsolete":false,"name":"acute myeloid leukemia with t(6;9)(p23;q34)","secondary_identifiers":["MEDGEN:1376401","UMLS:C4518837","GARD:21710"],"synonyms":[{"name":"AML with t(6;9)(p23;q34)","type":"exact"}],"termid":"MONDO:0018433","xrefs":{"Monarch":{"xref_id":"0018433"}}}


id: MONDO:0012555
data:
  {"annotated_genes":["SJAG_05019"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86048],"is_not":false,"summary":null,"term":"MONDO:0012555"}]},"cv_name":"mondo","definition":"Any Cornelia de Lange syndrome in which the cause of the disease is a mutation in the SMC3 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Cornelia de Lange syndrome","termid":"MONDO:0016033"},{"relation_name":"is_a","term_name":"non-syndromic limb reduction defect","termid":"MONDO:0019713"}],"gene_count":1,"genes_by_uniquename":{"SJAG_05019":null},"genotype_count":0,"is_obsolete":false,"name":"Cornelia de Lange syndrome 3","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:610759","DOID:0080507","UMLS:C1853099","GARD:15499","MEDGEN:339902"],"synonyms":[{"name":"CDLS3","type":"related"},{"name":"Cornelia DE Lange syndrome 3","type":"related"},{"name":"Cornelia De Lange syndrome type 3","type":"exact"},{"name":"Cornelia de Lange syndrome 3","type":"exact"},{"name":"Cornelia de Lange syndrome caused by mutation in SMC3","type":"exact"},{"name":"Cornelia de Lange syndrome caused by mutation in Smc3","type":"exact"},{"name":"SMC3 Cornelia de Lange syndrome","type":"exact"},{"name":"Smc3 Cornelia de Lange syndrome","type":"exact"}],"termid":"MONDO:0012555","terms_by_termid":{"MONDO:0012555":null},"xrefs":{"Monarch":{"xref_id":"0012555"}}}


id: FYPO:0006349
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at one or more specific promoter elements is abolished.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to chromatin during vegetative growth","termid":"FYPO:0001508"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abolished protein localization to chromatin at promoter","synonyms":[{"name":"abolished protein localisation to chromatin at promoter during vegetative growth","type":"exact"},{"name":"abolished protein localization to chromatin at promoter during mitotic cell cycle","type":"related"},{"name":"abolished protein localization to chromatin at promoter element","type":"exact"},{"name":"protein localization to chromatin at promoter abolished","type":"exact"}],"termid":"FYPO:0006349"}


id: MONDO:0015441
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Ring chromosome 7 syndrome is a rare chromosomal anomaly syndrome, with highly variable phenotype, principally characterized by growth failure, short stature, intellectual disability, dermatological abnormalities (nevus flammeus, dark pigmented nevi, café-au-lait spots), microcephaly and facial dysmorphism (incl. facial asymmetry, small ears, abnormal palpebral fissures, ptosis, epicanthic folds, hyper/hypotelorism). Additional reported features include convulsions, cleft lip and palate, clinodactyly, kyphoscoliosis and genital anomalies (i.e. cryptorchidism, hypospadias, micropenis).","definition_xrefs":["Orphanet:1449"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome 7 disorder","termid":"MONDO:0700014"},{"relation_name":"is_a","term_name":"ring chromosome disorder","termid":"MONDO:0700091"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring chromosome 7","secondary_identifiers":["GARD:1345","NCIT:C121986","UMLS:C2931622","MEDGEN:419454","SCTID:765489006","MESH:C537813"],"synonyms":[{"name":"R7","type":"related"},{"name":"Ring 7","type":"related"},{"name":"Ring chromosome 7 syndrome","type":"related"},{"name":"Ring chromosome type 7","type":"exact"},{"name":"chromosome 7 ring","type":"related"},{"name":"rose cluster 7","type":"exact"}],"termid":"MONDO:0015441","xrefs":{"Monarch":{"xref_id":"0015441"}}}


id: MONDO:0005513
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete methylmalonic aciduria and homocystinuria type cblE (obsolete MONDO:0005513)","termid":"MONDO:0005513","xrefs":{"Monarch":{"xref_id":"0005513"}}}


id: PBO:0045208
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNAJC3 divergent transcript","termid":"PBO:0045208"}


id: GO:0008113
data:
  {"annotated_genes":["SJAG_00419"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[60726],"is_not":false,"summary":null,"term":"GO:0008113"}]},"cv_name":"molecular_function","definition":"Catalysis of the reactions: peptide-L-methionine + thioredoxin disulfide + H2O = peptide-L-methionine (S)-S-oxide + thioredoxin, and L-methionine + thioredoxin disulfide + H2O = L-methionine (S)-S-oxide + thioredoxin. Can act on oxidized methionine in peptide linkage with specificity for the S enantiomer. Thioredoxin disulfide is the oxidized form of thioredoxin.","definition_xrefs":["EC:1.8.4.11","GOC:vw","PMID:11169920","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor","termid":"GO:0016671"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00419":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"peptide-methionine (S)-S-oxide reductase activity","references_by_uniquename":{"GO_REF:0000003":null},"secondary_identifiers":["GO:0072561","Reactome:R-HSA-1222363","Reactome:R-HSA-5676940","GO:0033742","RHEA:14217","MetaCyc:RXN-8668"],"synonyms":[{"name":"MsrA","type":"related"},{"name":"methionine S-oxide reductase (S-form oxidizing) activity","type":"related"},{"name":"methionine S-oxide reductase activity","type":"broad"},{"name":"methionine sulfoxide (protein) reductase activity","type":"exact"},{"name":"methionine sulfoxide reductase A activity","type":"related"},{"name":"methionine sulfoxide reductase activity","type":"broad"},{"name":"methionine sulphoxide reductase A activity","type":"related"},{"name":"peptide Met(O) reductase activity","type":"related"},{"name":"peptide methionine sulfoxide reductase activity","type":"related"},{"name":"peptide-L-methionine:thioredoxin-disulfide S-oxidoreductase [L-methionine (S)-S-oxide-forming] activity","type":"related"},{"name":"peptide-methionine-(S)-S-oxide reductase activity","type":"exact"},{"name":"protein-methionine-S-oxide reductase activity","type":"exact"}],"termid":"GO:0008113","terms_by_termid":{"GO:0008113":null}}


id: GO:2000844
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of testosterone secretion.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of lipid transport","termid":"GO:0032369"},{"relation_name":"is_a","term_name":"negative regulation of hormone secretion","termid":"GO:0046888"},{"relation_name":"is_a","term_name":"regulation of testosterone secretion","termid":"GO:2000843"},{"relation_name":"negatively_regulates","term_name":"testosterone secretion","termid":"GO:0035936"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of testosterone secretion","termid":"GO:2000844"}


id: PBO:0070313
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY3 pseudogene 2","termid":"PBO:0070313"}


id: GO:0016479
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of transcription mediated by RNA polymerase I.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of transcription by RNA polymerase I","termid":"GO:0006356"},{"relation_name":"is_a","term_name":"negative regulation of DNA-templated transcription","termid":"GO:0045892"},{"relation_name":"negatively_regulates","term_name":"transcription by RNA polymerase I","termid":"GO:0006360"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006351"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0006355"}],"interesting_parent_ids":["GO:0006351","GO:0006355","GO:0010467","GO:0008150"],"is_obsolete":false,"name":"negative regulation of transcription by RNA polymerase I","synonyms":[{"name":"down regulation of transcription from RNA polymerase I promoter","type":"exact"},{"name":"down-regulation of transcription from RNA polymerase I promoter","type":"exact"},{"name":"downregulation of transcription from RNA polymerase I promoter","type":"exact"},{"name":"inhibition of transcription from RNA polymerase I promoter","type":"narrow"},{"name":"negative regulation of transcription from Pol I promoter","type":"exact"},{"name":"negative regulation of transcription from RNA polymerase I promoter","type":"exact"}],"termid":"GO:0016479"}


id: PBO:0091430
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell surface glycoprotein, adhesion molecule","termid":"PBO:0091430"}


id: PBO:0082342
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent DNA helicase, also known as pontin; member of the AAA+ and RuvB-like protein families; similar to Rvb2p; conserved component of multiple complexes including the INO80 complex, the Swr1 complex, and the R2TP complex (Rvb1-Rvb2-Tah1-Pih1); involved in multiple processes such as chromatin remodeling, box C/D snoRNP assembly, and RNA polymerase II assembly","termid":"PBO:0082342"}


id: GO:0060809
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The epithelial to mesenchymal transition process in which a mesodermal cell loses apical/basolateral polarity, severs intercellular adhesive junctions, degrades basement membrane components and becomes a migratory mesenchymal cell as part of the process of gastrulation.","definition_xrefs":["GOC:dph","GOC:sdb_2009","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial to mesenchymal transition","termid":"GO:0001837"},{"relation_name":"is_a","term_name":"embryonic morphogenesis","termid":"GO:0048598"},{"relation_name":"part_of","term_name":"gastrulation","termid":"GO:0007369"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesodermal to mesenchymal transition involved in gastrulation","termid":"GO:0060809"}


id: GO:0071322
data:
  {"annotated_genes":["SJAG_04026","SJAG_04312","SJAG_02444","SJAG_03081","SJAG_01254","SJAG_00472","SJAG_00574","SJAG_01699","SJAG_01754"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[116955,102210,106279,115923,106870,94589,107221,109899,109393],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0010619"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbohydrate stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to carbohydrate","termid":"GO:0009743"},{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00472":null,"SJAG_00574":null,"SJAG_01254":null,"SJAG_01699":null,"SJAG_01754":null,"SJAG_02444":null,"SJAG_03081":null,"SJAG_04026":null,"SJAG_04312":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to carbohydrate stimulus","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0071322","terms_by_termid":{"GO:0010619":null}}


id: GO:0047870
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N(6)-dimethylallyladenine + S-adenosyl-L-methionine(1+) = S-methyl-5'-thioadenosine + discadenine + H+.","definition_xrefs":["EC:2.5.1.24","RHEA:19581"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity, transferring alkyl or aryl (other than methyl) groups","termid":"GO:0016765"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016765"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674","GO:0016765"],"is_obsolete":false,"name":"discadenine synthase activity","secondary_identifiers":["KEGG_REACTION:R03726","MetaCyc:DISCADENINE-SYNTHASE-RXN"],"synonyms":[{"name":"S-adenosyl-L-methionine:6-N-(Delta2-isopentenyl)-adenine 3-(3-amino-3-carboxypropyl)-transferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:N6-(Delta2-isopentenyl)-adenine 3-(3-amino-3-carboxypropyl)-transferas","type":"related"},{"name":"discadenine synthetase activity","type":"related"}],"termid":"GO:0047870"}


id: PBO:0034814
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDP-diacylglycerol-serine O-phosphatidyltransferase Pps1","termid":"PBO:0034814"}


id: PATO:0000560
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000560 height value (obsolete PATO:0000560)","termid":"PATO:0000560"}


id: MONDO:1011602
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Type 2 diabetes mellitus that occurs in Chinese hamster.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"type 2 diabetes mellitus, non-human animal","termid":"MONDO:1011402"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"type 2 diabetes mellitus, Chinese hamster","secondary_identifiers":["OMIA:000284-10029"],"termid":"MONDO:1011602","xrefs":{"Monarch":{"xref_id":"1011602"}}}


id: GO:0140120
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A histone reader that recognizes a histone H2A ubiquitinated at lysine 15.","definition_xrefs":["PMID:23760478"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H2A reader activity","termid":"GO:0140054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0030674"},{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0140566"}],"interesting_parent_ids":["GO:0030674","GO:0003674","GO:0060090","GO:0140566"],"is_obsolete":false,"name":"histone H2AK15ub reader activity","termid":"GO:0140120"}


id: PBO:0031415
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cell_cycle","termid":"PBO:0031415"}


id: PBO:0060941
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear factor, erythroid 2 like 3 pseudogene 1","termid":"PBO:0060941"}


id: FYPO:0001936
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of proton-transporting ATP synthase activity by a rotational mechanism is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased catalytic activity","termid":"FYPO:0000663"},{"relation_name":"is_a","term_name":"abnormal proton-transporting ATP synthase activity, rotational mechanism","termid":"FYPO:0001935"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002114"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0000652","FYPO:0000707","FYPO:0000138","FYPO:0000654","FYPO:0000661","FYPO:0002114"],"is_obsolete":false,"name":"decreased proton-transporting ATP synthase activity, rotational mechanism","synonyms":[{"name":"decreased hydrogen ion transporting ATP synthase activity, rotational mechanism","type":"exact"},{"name":"decreased mitochondrial proton-transporting ATP synthase activity","type":"narrow"},{"name":"decreased proton-transporting ATP synthase activity","type":"related"},{"name":"reduced mitochondrial proton-transporting ATP synthase activity","type":"narrow"},{"name":"reduced proton-transporting ATP synthase activity, rotational mechanism","type":"exact"}],"termid":"FYPO:0001936"}


id: PBO:0091820
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"orthologous to S. cerevisiae YDR293C","termid":"PBO:0091820"}


id: PBO:0075464
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spermatogenesis associated 16","termid":"PBO:0075464"}


id: MONDO:0018504
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A carcinoma that arises from the stomach and is characterized by the absence of microscopic features of glandular or squamous differentiation.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gastric carcinoma","termid":"MONDO:0004950"},{"relation_name":"is_a","term_name":"undifferentiated carcinoma","termid":"MONDO:0005617"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0004335"],"is_obsolete":false,"name":"undifferentiated carcinoma of stomach","secondary_identifiers":["MEDGEN:237029","ONCOTREE:USTAD","GARD:21759","NCIT:C5476","SCTID:766757006","Orphanet:423786","UMLS:C1336858"],"synonyms":[{"name":"Gastric undifferentiated carcinoma","type":"exact"},{"name":"anaplastic carcinoma of stomach","type":"exact"},{"name":"anaplastic carcinoma of the stomach","type":"exact"},{"name":"anaplastic gastric carcinoma","type":"exact"},{"name":"stomach undifferentiated carcinoma","type":"exact"},{"name":"undifferentiated carcinoma of stomach","type":"exact"},{"name":"undifferentiated carcinoma of the stomach","type":"exact"},{"name":"undifferentiated gastric (stomach) cancer","type":"exact"},{"name":"undifferentiated gastric carcinoma","type":"exact"},{"name":"undifferentiated stomach adenocarcinoma","type":"related"}],"termid":"MONDO:0018504","xrefs":{"Monarch":{"xref_id":"0018504"}}}


id: PBO:0110256
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"snRNA and snoRNA trimethylguanosine synthase Tgs1","termid":"PBO:0110256"}


id: PBO:0012539
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-regulates_o_results_in_acquisition_of_features_of","termid":"PBO:0012539"}


id: PBO:0078837
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Pro (anticodon TGG) 3-1","termid":"PBO:0078837"}


id: PBO:0066827
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 126","termid":"PBO:0066827"}


id: PBO:0058922
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA let-7b","termid":"PBO:0058922"}


id: PBO:0053340
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 208","termid":"PBO:0053340"}


id: GO:0030953
data:
  {"annotated_genes":["SJAG_02737","SJAG_00856","SJAG_02761","SJAG_04841"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[100742,106821],"is_not":false,"summary":null,"term":"GO:0030953"},{"annotations":[76703],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0060172"},{"annotations":[117333],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030954"}]},"cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of astral microtubules, any of the spindle microtubules that radiate in all directions from the spindle poles.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spindle organization","termid":"GO:0007051"},{"relation_name":"is_a","term_name":"cytoplasmic microtubule organization","termid":"GO:0031122"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00856":null,"SJAG_02737":null,"SJAG_02761":null,"SJAG_04841":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0000226"}],"interesting_parent_ids":["GO:0000226","GO:0007049","GO:0007010","GO:0008150"],"is_obsolete":false,"name":"astral microtubule organization","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"astral microtubule organisation","type":"exact"},{"name":"astral microtubule organization and biogenesis","type":"related"}],"termid":"GO:0030953","terms_by_termid":{"GO:0030953":null,"GO:0030954":null,"GO:0060172":null}}


id: GO:0018538
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the generic reaction: epoxide + CO2 + NAD+ + electron donor = beta-keto acid + NADH + reduced electron donor; the electron donor may be NADPH or a dithiol. This reaction is the ring opening and carboxylation of an epoxide; for example: epoxypropane + CO2 + NAD+ + NADPH = acetoacetate + NADH + NADP+.","definition_xrefs":["PMID:9555888"],"gene_count":0,"genotype_count":0,"name":"obsolete epoxide carboxylase activity (obsolete GO:0018538)","termid":"GO:0018538"}


id: PBO:0042926
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chorionic gonadotropin subunit beta 5","termid":"PBO:0042926"}


id: MONDO:1010684
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"AA amyloidosis that occurs in bats.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"AA amyloidosis, non-human animal","termid":"MONDO:1010092"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AA amyloidosis, bats","secondary_identifiers":["OMIA:000038-9397"],"termid":"MONDO:1010684","xrefs":{"Monarch":{"xref_id":"1010684"}}}


id: GO:0016865
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A grouping term for intramolecular oxidoreductases that cannot be more accurately categorized.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete intramolecular oxidoreductase activity, other intramolecular oxidoreductases (obsolete GO:0016865)","synonyms":[{"name":"intramolecular isomerase activity, other intramolecular oxidoreductases","type":"exact"},{"name":"intramolecular oxidoreductase activity, other intramolecular oxidoreductases","type":"exact"}],"termid":"GO:0016865"}


id: PBO:0062003
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily H member 2","termid":"PBO:0062003"}


id: GO:0032660
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of production of any member of the interleukin-17 family of cytokines.","definition_xrefs":["PMID:16482511","GOC:add","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytokine production","termid":"GO:0001817"},{"relation_name":"regulates","term_name":"interleukin-17 production","termid":"GO:0032620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of interleukin-17 production","secondary_identifiers":["GO:0045378","GO:1905076"],"synonyms":[{"name":"regulation of CTLA-8 production","type":"exact"},{"name":"regulation of Cytotoxic T-lymphocyte-associated antigen 8 secretion","type":"exact"},{"name":"regulation of IL-17 production","type":"exact"},{"name":"regulation of interleukin-17 biosynthetic process","type":"narrow"},{"name":"regulation of interleukin-17 secretion","type":"narrow"}],"termid":"GO:0032660"}


id: GO:0045778
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of ossification, the formation of bone or of a bony substance or the conversion of fibrous tissue or of cartilage into bone or a bony substance.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of ossification","termid":"GO:0030278"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"positively_regulates","term_name":"ossification","termid":"GO:0001503"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of ossification","synonyms":[{"name":"activation of ossification","type":"narrow"},{"name":"positive regulation of bone biosynthesis","type":"exact"},{"name":"positive regulation of bone formation","type":"exact"},{"name":"stimulation of ossification","type":"narrow"},{"name":"up regulation of ossification","type":"exact"},{"name":"up-regulation of ossification","type":"exact"},{"name":"upregulation of ossification","type":"exact"}],"termid":"GO:0045778"}


id: PBO:0052701
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 17 pseudogene 2","termid":"PBO:0052701"}


id: GO:0031968
data:
  {"annotated_genes":["SJAG_02355","SJAG_04270","SJAG_04203","SJAG_01312","SJAG_05268","SJAG_03175","SJAG_00605","SJAG_00265","SJAG_00031","SJAG_00428","SJAG_03415","SJAG_03416","SJAG_01929","SJAG_01134","SJAG_02848","SJAG_04072","SJAG_01260","SJAG_04996","SJAG_03358","SJAG_03435","SJAG_02084","SJAG_00754","SJAG_05259","SJAG_00812","SJAG_04370","SJAG_00810","SJAG_03328","SJAG_03345","SJAG_03464","SJAG_03710","SJAG_01951","SJAG_02543","SJAG_01357","SJAG_00999","SJAG_01900","SJAG_00569","SJAG_02361","SJAG_04732","SJAG_00699","SJAG_00048","SJAG_01305","SJAG_02265","SJAG_03515","SJAG_01780","SJAG_00368","SJAG_00948","SJAG_01212","SJAG_00655","SJAG_04759","SJAG_03502","SJAG_02641","SJAG_00880","SJAG_00235"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[105181,89606,116158],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0036266"},{"annotations":[106173,105182,101703,104830,99614,106303,116159,102865,118068,106959,100889,89609],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0032473"},{"annotations":[70284,70367,117005,75142,80440],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0032865"},{"annotations":[107582],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0031315"},{"annotations":[110791,112178],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0140595"},{"annotations":[92507,109667,88578,92265,75081,103124,104721,117975,101827,72050,72877,108081,106363,71296,89401,73948,73098,95801,104979,119170,96451,102818,92295],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005741"},{"annotations":[91251,99783,63885,106549,79494,70883],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0005742"},{"annotations":[88877],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005640"},{"annotations":[62093,73764,90726,70366],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0001401"}]},"cv_name":"cellular_component","definition":"The outer, i.e. cytoplasm-facing in a cellular organelle, lipid bilayer of an organelle envelope.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"outer membrane","termid":"GO:0019867"},{"relation_name":"is_a","term_name":"bounding membrane of organelle","termid":"GO:0098588"},{"relation_name":"part_of","term_name":"organelle envelope","termid":"GO:0031967"}],"gene_count":53,"genes_by_uniquename":{"SJAG_00031":null,"SJAG_00048":null,"SJAG_00235":null,"SJAG_00265":null,"SJAG_00368":null,"SJAG_00428":null,"SJAG_00569":null,"SJAG_00605":null,"SJAG_00655":null,"SJAG_00699":null,"SJAG_00754":null,"SJAG_00810":null,"SJAG_00812":null,"SJAG_00880":null,"SJAG_00948":null,"SJAG_00999":null,"SJAG_01134":null,"SJAG_01212":null,"SJAG_01260":null,"SJAG_01305":null,"SJAG_01312":null,"SJAG_01357":null,"SJAG_01780":null,"SJAG_01900":null,"SJAG_01929":null,"SJAG_01951":null,"SJAG_02084":null,"SJAG_02265":null,"SJAG_02355":null,"SJAG_02361":null,"SJAG_02543":null,"SJAG_02641":null,"SJAG_02848":null,"SJAG_03175":null,"SJAG_03328":null,"SJAG_03345":null,"SJAG_03358":null,"SJAG_03415":null,"SJAG_03416":null,"SJAG_03435":null,"SJAG_03464":null,"SJAG_03502":null,"SJAG_03515":null,"SJAG_03710":null,"SJAG_04072":null,"SJAG_04203":null,"SJAG_04270":null,"SJAG_04370":null,"SJAG_04732":null,"SJAG_04759":null,"SJAG_04996":null,"SJAG_05259":null,"SJAG_05268":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"organelle outer membrane","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0031968","terms_by_termid":{"GO:0001401":null,"GO:0005640":null,"GO:0005741":null,"GO:0005742":null,"GO:0031315":null,"GO:0032473":null,"GO:0032865":null,"GO:0036266":null,"GO:0140595":null}}


id: PR:Q9US10
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC607.08c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9US10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized membrane protein C607.08c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC607.08c","synonyms":[{"name":"Spom972h-SPAC607.08c","type":"exact"},{"name":"uncharacterized membrane protein C6F6.13c (Schizosaccharomyces pombe 972h-)","type":"related"}],"termid":"PR:Q9US10"}


id: MONDO:1011256
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any achromatopsia that occurs in dogs due to a mutation in the CNGB3 gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"},{"relation_name":"is_a","term_name":"achromatopsia, non-human animal","termid":"MONDO:1012578"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"achromatopsia, CNGB3-related, dog","secondary_identifiers":["OMIA:001365-9615"],"synonyms":[{"name":"achromatopsia-3 CNGB3-related, dog","type":"related"},{"name":"canine day blindness","type":"broad"}],"termid":"MONDO:1011256","xrefs":{"Monarch":{"xref_id":"1011256"}}}


id: PBO:0030897
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-transcription_regulation_phenotype_during_vegetative_growth","termid":"PBO:0030897"}


id: SO:0000997
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A portion of a gene that is not the complete gene.","direct_ancestors":[{"relation_name":"has_quality","term_name":"fragmentary","termid":"SO:0000731"},{"relation_name":"is_a","term_name":"gene_component_region","termid":"SO:0000842"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gene_fragment","synonyms":[{"name":"gene fragment","type":"exact"}],"termid":"SO:0000997"}


id: GO:0002704
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of leukocyte mediated immunity.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of immune effector process","termid":"GO:0002698"},{"relation_name":"is_a","term_name":"regulation of leukocyte mediated immunity","termid":"GO:0002703"},{"relation_name":"negatively_regulates","term_name":"leukocyte mediated immunity","termid":"GO:0002443"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of leukocyte mediated immunity","synonyms":[{"name":"down regulation of leukocyte mediated immunity","type":"exact"},{"name":"down-regulation of leukocyte mediated immunity","type":"exact"},{"name":"downregulation of leukocyte mediated immunity","type":"exact"},{"name":"inhibition of leukocyte mediated immunity","type":"narrow"},{"name":"negative regulation of immune cell mediated immunity","type":"exact"},{"name":"negative regulation of leucocyte mediated immunity","type":"exact"}],"termid":"GO:0002704"}


id: MONDO:0030312
data:
  {"annotated_genes":["SJAG_00380"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86925],"is_not":false,"summary":null,"term":"MONDO:0030312"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive cerebellar ataxia","termid":"MONDO:0015244"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00380":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0006025"],"is_obsolete":false,"name":"spinocerebellar ataxia, autosomal recessive 29","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0070410","MEDGEN:1788435","OMIM:619389","UMLS:C5543595"],"synonyms":[{"name":"Barakat-Van Ham-Kaya syndrome","type":"exact"},{"name":"SCAR29","type":"exact"},{"name":"neurodevelopmental disorder with hypotonia and cerebellar ataxia","type":"exact"},{"name":"spinocerebellar ataxia, autosomal recessive 29","type":"exact"}],"termid":"MONDO:0030312","terms_by_termid":{"MONDO:0030312":null},"xrefs":{"Monarch":{"xref_id":"0030312"}}}


id: MONDO:0009435
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hypospasdias B intellectual deficit, Goldblatt type is a very rare multiple congenital anomalies syndrome described in three brothers of one South-African family, and characterized by hypospadias and intellectual deficit, in association with mirocephaly, craniofacial dysmorphism, joint laxity and beaked nails.","definition_xrefs":["Orphanet:2261"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypospadias-intellectual disability, Goldblatt type syndrome","secondary_identifiers":["OMIM:241760","SCTID:716096005","UMLS:C0795989","GARD:2928","MEDGEN:162896","MESH:C563067"],"synonyms":[{"name":"Goldblatt Wallis syndrome","type":"related"},{"name":"Goldblatt-Wallis syndrome","type":"exact"},{"name":"hypospadias intellectual deficit Goldblatt type","type":"related"},{"name":"hypospadias intellectual disability Goldblatt type","type":"related"},{"name":"hypospadias intellectual disability syndrome","type":"related"},{"name":"hypospadias mental retardation Goldblatt type","type":"related"},{"name":"hypospadias mental retardation syndrome","type":"related"},{"name":"hypospadias-intellectual disability syndrome","type":"related"},{"name":"hypospadias-mental retardation syndrome","type":"related"}],"termid":"MONDO:0009435","xrefs":{"Monarch":{"xref_id":"0009435"}}}


id: PBO:0070957
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L18a pseudogene 12","termid":"PBO:0070957"}


id: MONDO:0009828
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"palant cleft palate syndrome","secondary_identifiers":["MEDGEN:337971","MESH:C538102","UMLS:C1850102","OMIM:260150"],"synonyms":[{"name":"Palant cleft palate syndrome","type":"exact"},{"name":"unusual facies, cleft palate, intellectual disability, and limb abnormalities","type":"related"},{"name":"unusual facies, cleft palate, mental retardation, and limb abnormalities","type":"related"}],"termid":"MONDO:0009828","xrefs":{"Monarch":{"xref_id":"0009828"}}}


id: PBO:0002443
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sm snRNP core protein Smd2","termid":"PBO:0002443"}


id: MONDO:0013485
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Spinocerebellar ataxia type 35 (SCA35) is a subtype of autosomal dominant cerebellar ataxia type 1 (ADCA type 1) characterized by the adult-onset of progressive gait and limb ataxia, dysarthria, ocular dysmetria, intention tremor, hyperreflexia and spasmodic torticollis.","definition_xrefs":["Orphanet:276193"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant cerebellar ataxia type I","termid":"MONDO:0019792"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002039"},{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0005559","MONDO:0002039"],"is_obsolete":false,"name":"spinocerebellar ataxia type 35","secondary_identifiers":["icd11.foundation:1674449075","MEDGEN:854733","GARD:12366","SCTID:719300001","UMLS:C3888031","OMIM:613908","DOID:0050982"],"synonyms":[{"name":"SCA35","type":"exact"},{"name":"spinocerebellar ataxia 35","type":"related"},{"name":"spinocerebellar ataxia type 35","type":"exact"}],"termid":"MONDO:0013485","xrefs":{"Monarch":{"xref_id":"0013485"}}}


id: PBO:0078793
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Asn (GTT) 15-2","termid":"PBO:0078793"}


id: GO:0051854
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process by which an organism causes the formation in its symbiont organism of an abnormal growth whose cells have been transformed and continue to exist in the absence of the first organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:cc"],"gene_count":0,"genotype_count":0,"name":"obsolete induction in symbiont of tumor, nodule, or growth containing transformed cells (obsolete GO:0051854)","synonyms":[{"name":"induction in symbiont of tumor, nodule, or growth containing transformed cells","type":"exact"}],"termid":"GO:0051854"}


id: GO:0061959
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an (R)-carnitine stimulus.","definition_xrefs":["PMID:28102299"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to nitrogen compound","termid":"GO:1901698"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to (R)-carnitine","synonyms":[{"name":"response to L-carnitine","type":"exact"}],"termid":"GO:0061959"}


id: PBO:0000994
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Fanconi anemia","termid":"PBO:0000994"}


id: GO:0045465
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires the specialized features of the R8 photoreceptor.","definition_xrefs":["PMID:11880339"],"direct_ancestors":[{"relation_name":"is_a","term_name":"compound eye photoreceptor cell differentiation","termid":"GO:0001751"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"R8 cell differentiation","termid":"GO:0045465"}


id: MONDO:0025062
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A picornavirus infection producing symptoms similar to poliomyelitis in pigs.","definition_xrefs":["MESH:D004682"],"direct_ancestors":[{"relation_name":"is_a","term_name":"swine disease","termid":"MONDO:0024990"},{"relation_name":"is_a","term_name":"enterovirus infectious disease, non-human animal","termid":"MONDO:0700210"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"encephalomyelitis, enzootic porcine","synonyms":[{"name":"Talfan disease","type":"related"},{"name":"Teschen disease","type":"related"},{"name":"disease, Talfan","type":"related"},{"name":"disease, Teschen","type":"related"},{"name":"enzootic porcine encephalomyelitis","type":"related"},{"name":"poliomyelitis, porcine","type":"related"},{"name":"porcine encephalomyelitis, enzootic","type":"related"},{"name":"porcine poliomyelitis","type":"related"}],"termid":"MONDO:0025062","xrefs":{"Monarch":{"xref_id":"0025062"}}}


id: FYPO:0006292
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which protein localization to the vacuole does not occur, and the protein is present in the cytoplasm instead.","definition_xrefs":["PMID:26365378","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to vacuole","termid":"FYPO:0005490"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"abolished protein localization to vacuole, with protein mislocalized to cytosol","synonyms":[{"name":"abolished protein localisation to vacuole, with protein mislocalised to cytosol","type":"exact"},{"name":"abolished protein localization to vacuole, with protein mislocalized to cytosol, during mitotic cell cycle","type":"related"},{"name":"abolished protein localization to vacuole, with protein mislocalized to cytosol, during vegetative growth","type":"exact"},{"name":"protein localization to vacuole abolished, with protein mislocalized to cytosol","type":"exact"},{"name":"protein mislocalized from vacuole to cytosol","type":"related"}],"termid":"FYPO:0006292"}


id: GO:0031973
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The region between the inner and outer lipid bilayers of a chromoplast envelope.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plastid intermembrane space","termid":"GO:0009529"},{"relation_name":"part_of","term_name":"chromoplast envelope","termid":"GO:0031898"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"chromoplast intermembrane space","synonyms":[{"name":"chromoplast envelope lumen","type":"exact"}],"termid":"GO:0031973"}


id: MONDO:0009332
data:
  {"annotated_genes":["SJAG_00611","SJAG_03153","SJAG_02796","SJAG_02297","SJAG_00839","SJAG_04509","SJAG_03889","SJAG_01351","SJAG_03684","SJAG_03115","SJAG_00088","SJAG_02208","SJAG_04334","SJAG_01162","SJAG_02708","SJAG_01852","SJAG_04495","SJAG_01732","SJAG_02453","SJAG_02539","SJAG_00319","SJAG_01759","SJAG_01798","SJAG_05180","SJAG_04473","SJAG_00930","SJAG_01410","SJAG_02339","SJAG_03089","SJAG_00988","SJAG_02556","SJAG_01960","SJAG_02330"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85608],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010480"},{"annotations":[85819,85820],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009134"},{"annotations":[85863],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007109"},{"annotations":[85399],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014118"},{"annotations":[86679],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013248"},{"annotations":[87103],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013499"},{"annotations":[85387],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014108"},{"annotations":[87358],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014986"},{"annotations":[87362],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014987"},{"annotations":[87359],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014985"},{"annotations":[86269],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009259"},{"annotations":[86573],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009284"},{"annotations":[86545],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013275"},{"annotations":[87221],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0019531"},{"annotations":[86342],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011997"},{"annotations":[85574],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012465"},{"annotations":[85978],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009953"},{"annotations":[86265],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014757"},{"annotations":[87252,87251],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0024553"},{"annotations":[87603],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013307"},{"annotations":[86597],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0957809"},{"annotations":[86457,86456],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0958017"},{"annotations":[87050],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032899"},{"annotations":[86828,86827],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009340"},{"annotations":[87144],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011405"},{"annotations":[86068],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012559"},{"annotations":[85963],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009950"},{"annotations":[87445],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010121"},{"annotations":[86989],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010294"}]},"cv_name":"mondo","definition":"A disorder of the blood that is present at birth.","definition_xrefs":["NCIT:C104003"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hematologic 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disorder","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C3267032","MEDGEN:760584"],"synonyms":[{"name":"congenital haematological system disease","type":"exact"},{"name":"congenital hematological disorder","type":"exact"},{"name":"congenital hematological system disease","type":"exact"}],"termid":"MONDO:0009332","terms_by_termid":{"MONDO:0007109":null,"MONDO:0009134":null,"MONDO:0009259":null,"MONDO:0009284":null,"MONDO:0009340":null,"MONDO:0009950":null,"MONDO:0009953":null,"MONDO:0010121":null,"MONDO:0010294":null,"MONDO:0010480":null,"MONDO:0011405":null,"MONDO:0011997":null,"MONDO:0012465":null,"MONDO:0012559":null,"MONDO:0013248":null,"MONDO:0013275":null,"MONDO:0013307":null,"MONDO:0013499":null,"MONDO:0014108":null,"MONDO:0014118":null,"MONDO:0014757":null,"MONDO:0014985":null,"MONDO:0014986":null,"MONDO:0014987":null,"MONDO:0019531":null,"MONDO:0024553":null,"MONDO:0032899":null,"MONDO:0957809":null,"MONDO:0958017":null},"xrefs":{"Monarch":{"xref_id":"0009332"}}}


id: PBO:0062928
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prolyl 3-hydroxylase 1","termid":"PBO:0062928"}


id: PBO:0067227
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 297, pseudogene","termid":"PBO:0067227"}


id: GO:0050145
data:
  {"annotated_genes":["SJAG_02038","SJAG_03798","SJAG_00779","SJAG_04849"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[72383,72306],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004017"},{"annotations":[76296],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004385"},{"annotations":[80771],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0033862"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a ribonucleoside 5'-phosphate + ATP = a ribonucleoside 5'-diphosphate + ADP.","definition_xrefs":["RHEA:24036"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, phosphate group as acceptor","termid":"GO:0016776"},{"relation_name":"is_a","term_name":"nucleobase-containing compound kinase activity","termid":"GO:0019205"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00779":null,"SJAG_02038":null,"SJAG_03798":null,"SJAG_04849":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016301","GO:0016740"],"is_obsolete":false,"name":"nucleoside monophosphate kinase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["GO:0019201","EC:2.7.4.4","Reactome:R-HSA-73635","Reactome:R-HSA-6788798","Reactome:R-HSA-2162092","Reactome:R-HSA-73548","Reactome:R-HSA-75125","Reactome:R-HSA-6788810","Reactome:R-HSA-9754978","Reactome:R-HSA-75126","MetaCyc:NUCLEOSIDE-PHOSPHATE-KINASE-RXN"],"synonyms":[{"name":"ATP:nucleoside-phosphate phosphotransferase activity","type":"related"},{"name":"NMP-kinase activity","type":"related"},{"name":"nucleoside-phosphate kinase activity","type":"exact"},{"name":"nucleotide kinase activity","type":"related"}],"termid":"GO:0050145","terms_by_termid":{"GO:0004017":null,"GO:0004385":null,"GO:0033862":null}}


id: GO:0034541
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: dimethylarsenous acid + R2S-CH3 = trimethylarsine oxide + R2SH.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete dimethylarsinite methyltransferase activity (obsolete GO:0034541)","termid":"GO:0034541"}


id: MONDO:0800403
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inherited retinopathy caused by bi-allelic variants in the CNGB1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited retinal dystrophy","termid":"MONDO:0019118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"CNGB1-related retinopathy","termid":"MONDO:0800403","xrefs":{"Monarch":{"xref_id":"0800403"}}}


id: GO:0044161
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A vesicle formed of membrane or protein, found in the cytoplasm of a host cell.","definition_xrefs":["GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host intracellular membrane-bounded organelle","termid":"GO:0033648"},{"relation_name":"is_a","term_name":"host cell cytoplasm part","termid":"GO:0033655"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell cytoplasmic vesicle","termid":"GO:0044161"}


id: PR:Q10089
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC11D3.10 gene.","definition_xrefs":["UniProtKB:Q10089","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C11D3.10 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC11D3.10","synonyms":[{"name":"Spom972h-SPAC11D3.10","type":"exact"}],"termid":"PR:Q10089"}


id: GO:0051939
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of gamma-aminobutyric acid (GABA, 4-aminobutyrate) into a cell or organelle.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acidic amino acid transport","termid":"GO:0015800"},{"relation_name":"is_a","term_name":"gamma-aminobutyric acid transport","termid":"GO:0015812"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"gamma-aminobutyric acid import","synonyms":[{"name":"4-aminobutyrate import","type":"exact"},{"name":"GABA import","type":"exact"},{"name":"gamma-aminobutyrate import","type":"exact"},{"name":"gamma-aminobutyric acid uptake","type":"exact"}],"termid":"GO:0051939"}


id: MOD:01041
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes a benzyloxycarbonyl group for a hydrogen atom.","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"benzyloxycarbonyl modified residue","synonyms":[{"name":"Z","type":"exact"}],"termid":"MOD:01041"}


id: GO:0007496
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the anterior midgut over time, from its formation to the mature structure.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"midgut development","termid":"GO:0007494"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anterior midgut development","termid":"GO:0007496"}


id: PBO:0047300
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FERM, ARH/RhoGEF and pleckstrin domain protein 2","termid":"PBO:0047300"}


id: GO:0006468
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of introducing a phosphate group on to a protein.","definition_xrefs":["GOC:hb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphorylation","termid":"GO:0016310"},{"relation_name":"is_a","term_name":"protein modification process","termid":"GO:0036211"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein phosphorylation","synonyms":[{"name":"protein amino acid phosphorylation","type":"exact"}],"termid":"GO:0006468"}


id: GO:0017017
data:
  {"annotated_genes":["SJAG_03263"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71369],"is_not":false,"summary":null,"term":"GO:0017017"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: MAP kinase serine/threonine/tyrosine phosphate + H2O = MAP kinase serine/threonine/tyrosine + phosphate.","definition_xrefs":["PMID:12184814","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein tyrosine/serine/threonine phosphatase activity","termid":"GO:0008138"},{"relation_name":"is_a","term_name":"MAP kinase phosphatase activity","termid":"GO:0033549"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03263":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0004721"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0003674","GO:0140096","GO:0016788","GO:0004721"],"is_obsolete":false,"name":"MAP kinase tyrosine/serine/threonine phosphatase activity","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"dual-specificity MAP kinase phosphatase activity","type":"exact"}],"termid":"GO:0017017","terms_by_termid":{"GO:0017017":null}}


id: PBO:0075561
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPG21 abhydrolase domain containing, maspardin","termid":"PBO:0075561"}


id: PR:G2TRR1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- gem7 gene.","definition_xrefs":["UniProtKB:G2TRR1","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gem-associated protein 7 homolog (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC32F12.16","synonyms":[{"name":"Spom972h-gem7","type":"exact"}],"termid":"PR:G2TRR1"}


id: PBO:0077553
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 259","termid":"PBO:0077553"}


id: MONDO:0000086
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete polydactyly, preaxial (obsolete MONDO:0000086)","termid":"MONDO:0000086","xrefs":{"Monarch":{"xref_id":"0000086"}}}


id: PBO:0052831
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 224, pseudogene","termid":"PBO:0052831"}


id: PBO:0001733
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal-ubiquitin fusion protein","termid":"PBO:0001733"}


id: PBO:0038552
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ABHD17A pseudogene 7","termid":"PBO:0038552"}


id: PBO:0085104
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nuclear protein that negatively regulates pseudohyphal differentiation; plays a regulatory role in the cyclic AMP (cAMP)-dependent protein kinase (PKA) signal transduction pathway; relocalizes to the cytosol in response to hypoxia; SOK2 has a paralog, PHD1, that arose from the whole genome duplication","termid":"PBO:0085104"}


id: GO:0061724
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The selective degradation of lipid droplets by macroautophagy.","definition_xrefs":["GOC:autophagy","PMID:23708524","PMID:26076903"],"direct_ancestors":[{"relation_name":"is_a","term_name":"macroautophagy","termid":"GO:0016236"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006914"}],"interesting_parent_ids":["GO:0006914","GO:0008150"],"is_obsolete":false,"name":"lipophagy","secondary_identifiers":["Reactome:R-HSA-9613354"],"termid":"GO:0061724"}


id: PR:O14067
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC1687.08 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14067"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C1687.08 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1687.08","synonyms":[{"name":"Spom972h-SPAC1687.08","type":"exact"}],"termid":"PR:O14067"}


id: SO:0000570
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Recombination signal of an immunoglobulin/T-cell receptor gene, including the 3' D-heptamer (SO:0000493), 3' D-spacer, and 3' D-nonamer (SO:0000494) in 3' of the D-region of a D-gene.","direct_ancestors":[{"relation_name":"is_a","term_name":"D_gene_recombination_feature","termid":"SO:0000492"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"three_prime_D_recombination_signal_sequence","synonyms":[{"name":"3'D-RS","type":"exact"},{"name":"three prime D recombination signal sequence","type":"exact"},{"name":"three_prime_D-recombination_signal_sequence","type":"exact"}],"termid":"SO:0000570"}


id: PBO:0052895
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 10-6","termid":"PBO:0052895"}


id: MONDO:0001893
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A melanoma (disease) that involves the spinal cord.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spinal cord cancer","termid":"MONDO:0003544"},{"relation_name":"is_a","term_name":"primary melanoma of the central nervous system","termid":"MONDO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"spinal cord melanoma","secondary_identifiers":["MEDGEN:236837","DOID:14151","NCIT:C5158","UMLS:C1336045"],"synonyms":[{"name":"melanoma (disease) of spinal cord","type":"exact"},{"name":"melanoma of spinal cord","type":"exact"},{"name":"melanoma of the spinal cord","type":"exact"},{"name":"spinal cord melanoma","type":"exact"},{"name":"spinal cord melanoma (disease)","type":"exact"}],"termid":"MONDO:0001893","xrefs":{"Monarch":{"xref_id":"0001893"}}}


id: GO:0005079
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binds to protein kinase A and anchors it to a particular subcellular location.","definition_xrefs":["PMID:10354567"],"gene_count":0,"genotype_count":0,"name":"obsolete protein kinase A anchoring activity (obsolete GO:0005079)","synonyms":[{"name":"A-kinase anchor protein activity","type":"exact"},{"name":"AKAP activity","type":"exact"},{"name":"protein kinase A anchoring activity","type":"exact"}],"termid":"GO:0005079"}


id: PBO:0059338
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein S9","termid":"PBO:0059338"}


id: PBO:0079514
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thymidine phosphorylase","termid":"PBO:0079514"}


id: PBO:0043578
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collagen type XI alpha 2 chain","termid":"PBO:0043578"}


id: PBO:0074095
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC26A9 and RAB7B antisense RNA 1","termid":"PBO:0074095"}


id: MONDO:0010279
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A syndrome characterized by malformation of the hands and feet, pigmentary skin lesions on the face and scalp and digital fibromatosis.","definition_xrefs":["Orphanet:88630"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"hyperpigmentation of the skin","termid":"MONDO:0019289"},{"relation_name":"is_a","term_name":"filamin-related bone disorder","termid":"MONDO:0019690"},{"relation_name":"is_a","term_name":"acromelic dysplasia","termid":"MONDO:0019695"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"terminal osseous dysplasia-pigmentary defects syndrome","secondary_identifiers":["UMLS:C1846129","MEDGEN:335344","MESH:C564554","GARD:16769","OMIM:300244","DOID:0112149"],"synonyms":[{"name":"Odpd","type":"related"},{"name":"Odpf syndrome","type":"related"},{"name":"TOD","type":"related"},{"name":"osseous dysplasia, digital, with Facial pigmentary defects and multiple frenula","type":"related"},{"name":"terminal osseous dysplasia","type":"related"},{"name":"terminal osseous dysplasia and pigmentary defects","type":"related"},{"name":"terminal osseous dysplasia, X-linked dominant","type":"exact"}],"termid":"MONDO:0010279","xrefs":{"Monarch":{"xref_id":"0010279"}}}


id: PBO:0039759
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"APPBP2 divergent transcript","termid":"PBO:0039759"}


id: PBO:0089324
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein phosphatase (Nem1-Spo7 complex) catalytic subunit Nem1","termid":"PBO:0089324"}


id: FYPO:0005863
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a protein that is normally localized to discrete regions in the nucleus, visible as foci or dots by microscopy, is abnormally localized such that dots cannot be observed.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased punctate nuclear protein localization","termid":"FYPO:0002624"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0001320","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"loss of punctate nuclear protein localization","synonyms":[{"name":"abolished punctate nuclear protein localization","type":"exact"},{"name":"loss of punctate nuclear protein localisation","type":"exact"},{"name":"loss of punctate nuclear protein localization during mitotic cell cycle","type":"related"},{"name":"loss of punctate nuclear protein localization during vegetative growth","type":"exact"},{"name":"nuclear dots absent","type":"related"}],"termid":"FYPO:0005863"}


id: PBO:0090405
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deoxycytidyl transferase Rev1","termid":"PBO:0090405"}


id: PBO:0072296
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S24 pseudogene 14","termid":"PBO:0072296"}


id: FYPO:0001743
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which isochromosome formation occurs more frequently than in wild type cells, and in which the break point is located in the imr region in the majority of cases. In isochromosome formation, one chromosome arm is lost and the other arm is duplicated in its place.","definition_xrefs":["PMID:18923422","PomBase:al","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased isochromosome formation","termid":"FYPO:0001742"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0000641"],"is_obsolete":false,"name":"increased isochromosome formation with preferential breakage in the imr region","synonyms":[{"name":"increased occurrence of isochromosome formation with preferential breakage in the imr region","type":"exact"}],"termid":"FYPO:0001743"}


