# terms

id: MONDO:0008658
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete virus Rd114 RNA Complementarity (obsolete MONDO:0008658)","secondary_identifiers":["OMIM:193070"],"synonyms":[{"name":"virus Rd114 RNA Complementarity","type":"exact"}],"termid":"MONDO:0008658","xrefs":{"Monarch":{"xref_id":"0008658"}}}


id: GO:0001939
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The pronucleus originating from the ovum that is being fertilized.","definition_xrefs":["ISBN:0198506732","GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pronucleus","termid":"GO:0045120"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005575","GO:0005634"],"is_obsolete":false,"name":"female pronucleus","termid":"GO:0001939"}


id: FYPO:0003008
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which negative regulation of transcription from RNA polymerase II promoter occurs to a lower extent than normal during a cellular response to zinc. Specific genes are more highly transcribed in the presence of zinc in the mutant than in wild type.","definition_xrefs":["PMID:22496451","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal negative regulation of transcription during vegetative growth","termid":"FYPO:0000624"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"decreased repression of transcription during cellular response to zinc","synonyms":[{"name":"decreased negative regulation of transcription from RNA polymerase II promoter during cellular response to zinc","type":"exact"},{"name":"decreased repression of transcription during cellular response to zinc during mitotic cell cycle","type":"related"},{"name":"decreased repression of transcription during cellular response to zinc during vegetative growth","type":"exact"},{"name":"decreased transcriptional repression during cellular response to zinc","type":"exact"},{"name":"reduced repression of transcription during cellular response to zinc","type":"exact"}],"termid":"FYPO:0003008"}


id: MONDO:0032628
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial complex I deficiency, nuclear type","termid":"MONDO:0100223"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004069"}],"interesting_parent_ids":["MONDO:0004069","MONDO:0005066"],"is_obsolete":false,"name":"mitochondrial complex 1 deficiency, nuclear type 24","secondary_identifiers":["OMIM:618245","DOID:0112079","MEDGEN:1648364","UMLS:C4748803","GARD:16328"],"synonyms":[{"name":"MC1DN24","type":"related"},{"name":"MITOCHONDRIAL COMPLEX I DEFICIENCY, NUCLEAR TYPE 24","type":"related"}],"termid":"MONDO:0032628","xrefs":{"Monarch":{"xref_id":"0032628"}}}


id: GO:0044228
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The external part of the host cell wall and/or host plasma membrane.","definition_xrefs":["GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell part","termid":"GO:0033643"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell surface","termid":"GO:0044228"}


id: GO:0010371
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of gibberellins.","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of ketone metabolic process","termid":"GO:0010565"},{"relation_name":"is_a","term_name":"regulation of isoprenoid metabolic process","termid":"GO:0019747"},{"relation_name":"is_a","term_name":"regulation of secondary metabolic process","termid":"GO:0043455"},{"relation_name":"is_a","term_name":"regulation of lipid biosynthetic process","termid":"GO:0046890"},{"relation_name":"is_a","term_name":"regulation of small molecule metabolic process","termid":"GO:0062012"},{"relation_name":"regulates","term_name":"gibberellin biosynthetic process","termid":"GO:0009686"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150","GO:0044281","GO:0019748"],"is_obsolete":false,"name":"regulation of gibberellin biosynthetic process","synonyms":[{"name":"regulation of gibberellic acid biosynthetic process","type":"narrow"}],"termid":"GO:0010371"}


id: SO:1000109
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000109 mutation_causing_out_of_frame_polypeptide_C_terminal_elongation (obsolete SO:1000109)","synonyms":[{"name":"mutation causing out of frame polypeptide C terminal elongation","type":"exact"},{"name":"out of frame polypeptide C-terminal elongation","type":"exact"}],"termid":"SO:1000109"}


id: FYPO:0002706
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of cordycepin than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002682"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000139","FYPO:0000003","FYPO:0002682","FYPO:0001985"],"is_obsolete":false,"name":"resistance to cordycepin","synonyms":[{"name":"resistance to cordycepin during mitotic cell cycle","type":"related"},{"name":"resistance to cordycepin during vegetative growth","type":"exact"},{"name":"resistant to cordycepin","type":"exact"}],"termid":"FYPO:0002706"}


id: PBO:0044386
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 2 subfamily A member 13","termid":"PBO:0044386"}


id: PBO:0091619
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1-aminocyclopropane-1-carboxylate deaminase","termid":"PBO:0091619"}


id: GO:0071757
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A circulating form of IgM consisting of a hexamer of IgM core units with a single J chain polypeptide.","definition_xrefs":["ISBN:0781765196","PMID:20176268","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"IgM immunoglobulin complex, circulating","termid":"GO:0071754"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005576"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005576","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"hexameric IgM immunoglobulin complex","synonyms":[{"name":"hexameric IgM antibody","type":"exact"}],"termid":"GO:0071757"}


id: MONDO:0009832
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Partial agenesis of the pancreas is characterized by the congenital absence of a critical mass of pancreatic tissue.","definition_xrefs":["Orphanet:2805"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pancreatic agenesis","secondary_identifiers":["MESH:C564908","icd11.foundation:634711891","SCTID:719044008","UMLS:C5195568","DOID:0050877","OMIMPS:260370","GARD:4203","MEDGEN:1681783"],"synonyms":[{"name":"PAGEN1","type":"related"},{"name":"congenital pancreatic agenesis","type":"exact"},{"name":"pancreatic agenesis 1","type":"related"},{"name":"pancreatic agenesis type 1","type":"exact"},{"name":"partial agenesis of the pancreas","type":"exact"},{"name":"partial pancreatic agenesis","type":"exact"}],"termid":"MONDO:0009832","xrefs":{"Monarch":{"xref_id":"0009832"}}}


id: GO:0047682
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: an aromatic primary alcohol + O2 = an aromatic aldehyde + H2O2.","definition_xrefs":["MetaCyc:ARYL-ALCOHOL-OXIDASE-RXN","EC:1.1.3.7"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor","termid":"GO:0016899"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"aryl-alcohol oxidase activity","secondary_identifiers":["RHEA:17541"],"synonyms":[{"name":"arom. alcohol oxidase activity","type":"related"},{"name":"aryl alcohol oxidase activity","type":"related"},{"name":"aryl-alcohol:oxygen oxidoreductase activity","type":"related"},{"name":"veratryl alcohol oxidase activity","type":"narrow"}],"termid":"GO:0047682"}


id: MONDO:1011737
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"integumentary system disorder, non-human animal","termid":"MONDO:1011328"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dystrophic epidermolysis bullosa, non-human animal","secondary_identifiers":["OMIA:000341"],"termid":"MONDO:1011737","xrefs":{"Monarch":{"xref_id":"1011737"}}}


id: PBO:0070396
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAR related orphan receptor B","termid":"PBO:0070396"}


id: PBO:0044228
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cubilin pseudogene 2","termid":"PBO:0044228"}


id: GO:0006098
data:
  {"annotated_genes":["SJAG_02696","SJAG_01824","SJAG_03174","SJAG_03852","SJAG_05314","SJAG_00070","SJAG_02148","SJAG_04263","SJAG_03934","SJAG_02297","SJAG_00633","SJAG_00685","SJAG_00501"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[68440],"is_not":false,"summary":null,"term":"GO:0006098"},{"annotations":[74896,108808,73475,104718,74107],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0009052"},{"annotations":[97337,73441,80753,97247,98543],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0009051"},{"annotations":[90049],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1905857"},{"annotations":[76392],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0043456"}]},"cv_name":"biological_process","definition":"The metabolic process in which glucose-6-phosphate is oxidized to form carbon dioxide (CO2) and ribulose 5-phosphate, coupled to reduction of NADP+ to NADPH; ribulose 5-P then enters a series of reactions that can yield biosynthetic precursors (ribose-5-phosphate and erythrose-4-phosphate) and glycolytic intermediates (fructose-6-phosphate and glyceraldehyde-3-phosphate).","definition_xrefs":["GOC:pde","ISBN:0198506732","MetaCyc:PENTOSE-P-PWY"],"direct_ancestors":[{"relation_name":"is_a","term_name":"NADPH regeneration","termid":"GO:0006740"},{"relation_name":"is_a","term_name":"glucose 6-phosphate metabolic process","termid":"GO:0051156"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00070":null,"SJAG_00501":null,"SJAG_00633":null,"SJAG_00685":null,"SJAG_01824":null,"SJAG_02148":null,"SJAG_02297":null,"SJAG_02696":null,"SJAG_03174":null,"SJAG_03852":null,"SJAG_03934":null,"SJAG_04263":null,"SJAG_05314":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281","GO:0006091"],"is_obsolete":false,"name":"pentose-phosphate shunt","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null},"secondary_identifiers":["Wikipedia:Pentose_phosphate_pathway","KEGG_PATHWAY:map00030","Reactome:R-HSA-71336"],"synonyms":[{"name":"hexose monophosphate pathway","type":"exact"},{"name":"pentose phosphate pathway","type":"exact"},{"name":"pentose phosphate shunt","type":"exact"},{"name":"pentose-phosphate pathway","type":"exact"}],"termid":"GO:0006098","terms_by_termid":{"GO:0006098":null,"GO:0009051":null,"GO:0009052":null,"GO:0043456":null,"GO:1905857":null}}


id: PATO:0000394
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An intensity which is less than moderate in type or degree or effect or force.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intensity","termid":"PATO:0000049"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mild intensity","termid":"PATO:0000394"}


id: MONDO:0014122
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any myofibromatosis in which the cause of the disease is a mutation in the NOTCH3 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"infantile myofibromatosis","termid":"MONDO:0016824"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myofibromatosis, infantile, 2","secondary_identifiers":["NCIT:C176944","OMIM:615293","UMLS:C3809084","MEDGEN:815414","GARD:15939"],"synonyms":[{"name":"IMF2","type":"related"},{"name":"NOTCH3 myofibromatosis","type":"exact"},{"name":"myofibromatosis caused by mutation in NOTCH3","type":"exact"},{"name":"myofibromatosis, infantile 2","type":"exact"},{"name":"myofibromatosis, infantile, 2","type":"exact"},{"name":"myofibromatosis, infantile, type 2","type":"exact"}],"termid":"MONDO:0014122","xrefs":{"Monarch":{"xref_id":"0014122"}}}


id: MONDO:0032630
data:
  {"annotated_genes":["SJAG_01820"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86612],"is_not":false,"summary":null,"term":"MONDO:0032630"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial complex I deficiency, nuclear type","termid":"MONDO:0100223"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01820":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004069"],"is_obsolete":false,"name":"mitochondrial complex 1 deficiency, nuclear type 26","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:618247","DOID:0112086","MEDGEN:1648283","UMLS:C4748809"],"synonyms":[{"name":"MC1DN26","type":"related"},{"name":"MITOCHONDRIAL COMPLEX I DEFICIENCY, NUCLEAR TYPE 26","type":"related"}],"termid":"MONDO:0032630","terms_by_termid":{"MONDO:0032630":null},"xrefs":{"Monarch":{"xref_id":"0032630"}}}


id: GO:0016971
data:
  {"annotated_genes":["SJAG_03992","SJAG_01647"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[58130,64736],"is_not":false,"summary":null,"term":"GO:0016971"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: [protein]-dithiol + O2 = [protein]-disulfide + H2O2 using FAD as a cofactor, leading to formation of disulfide bridges in proteins.","definition_xrefs":["PMID:10899311","PMID:35495482","PMID:19679655"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-disulfide reductase activity","termid":"GO:0015035"},{"relation_name":"is_a","term_name":"thiol oxidase activity","termid":"GO:0016972"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01647":null,"SJAG_03992":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0015036"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0140096","GO:0016491","GO:0003674","GO:0003824","GO:0015036"],"is_obsolete":false,"name":"flavin-dependent sulfhydryl oxidase activity","references_by_uniquename":{"GO_REF:0000002":null},"secondary_identifiers":["RHEA:59116"],"synonyms":[{"name":"flavin-linked sulfhydryl oxidase activity","type":"exact"}],"termid":"GO:0016971","terms_by_termid":{"GO:0016971":null}}


id: PBO:0080464
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vesicle trafficking 1","termid":"PBO:0080464"}


id: PBO:0079459
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trans-golgi network vesicle protein 23 homolog A","termid":"PBO:0079459"}


id: GO:1904824
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form an anaphase-promoting complex.","definition_xrefs":["GO_REF:0000079","GOC:TermGenie","PMID:16950791"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex assembly","termid":"GO:0065003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0065003","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"anaphase-promoting complex assembly","synonyms":[{"name":"APC assembly","type":"broad"},{"name":"anaphase promoting complex assembly","type":"exact"},{"name":"anaphase promoting complex formation","type":"exact"},{"name":"anaphase-promoting complex formation","type":"exact"},{"name":"cyclosome assembly","type":"exact"},{"name":"cyclosome formation","type":"exact"}],"termid":"GO:1904824"}


id: FYPO:0004498
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype observed in the vegetative growth phase of the life cycle in which positive regulation of DNA-directed DNA polymerase activity is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular process during vegetative growth","termid":"FYPO:0001319"},{"relation_name":"is_a","term_name":"normal regulation of catalytic activity","termid":"FYPO:0004920"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000002","FYPO:0001320","FYPO:0000257"],"is_obsolete":false,"name":"normal positive regulation of DNA-directed DNA polymerase activity","synonyms":[{"name":"normal positive regulation of DNA-directed DNA polymerase activity during mitotic cell cycle","type":"exact"},{"name":"normal positive regulation of DNA-directed DNA polymerase activity during vegetative growth","type":"exact"}],"termid":"FYPO:0004498"}


id: PBO:0069569
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 841, pseudogene","termid":"PBO:0069569"}


id: PBO:0030157
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_vegetative_cell,_abnormal_cell_shape,_normal_cell_size","termid":"PBO:0030157"}


id: PBO:0079503
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin pseudogene 1","termid":"PBO:0079503"}


id: FYPO:0006197
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell is inviable, has one nucleus, and has normal length but a greater diameter than normal.","definition_xrefs":["PMID:20805322","PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"mononucleate vegetative cell","termid":"FYPO:0000060"},{"relation_name":"has_part","term_name":"normal vegetative cell length","termid":"FYPO:0003503"},{"relation_name":"is_a","term_name":"mononucleate vegetative cell","termid":"FYPO:0000060"},{"relation_name":"is_a","term_name":"inviable vegetative cell with normal cell morphology","termid":"FYPO:0002199"},{"relation_name":"is_a","term_name":"inviable vegetative cell with abnormal cell morphology","termid":"FYPO:0002273"},{"relation_name":"is_a","term_name":"normal vegetative cell length","termid":"FYPO:0003503"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000004","FYPO:0001985","FYPO:0000002","FYPO:0001312","FYPO:0000257","FYPO:0000005","FYPO:0001320"],"is_obsolete":false,"name":"inviable mononucleate vegetative cell, with normal cell length and increased cell diameter","synonyms":[{"name":"inviable mononucleate cell, with normal cell length and increased cell diameter, during vegetative growth","type":"exact"},{"name":"inviable mononucleate vegetative cell, with increased cell diameter and normal cell length","type":"exact"},{"name":"inviable mononucleate vegetative cell, with normal cell length and increased cell diameter during mitotic cell cycle","type":"related"},{"name":"inviable mononucleate vegetative cell, with normal length and increased diameter","type":"exact"},{"name":"inviable swollen mononucleate vegetative cell, with normal cell length","type":"related"},{"name":"lethal; mononucleate vegetative cell, with normal cell length and increased cell diameter","type":"exact"}],"termid":"FYPO:0006197"}


id: PBO:0029550
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-viable_cell_at_low_temperature","termid":"PBO:0029550"}


id: PBO:0086418
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative GTPase; member of the Obg family; peripheral protein of the mitochondrial inner membrane that associates with the large ribosomal subunit; required for mitochondrial translation, possibly via a role in ribosome assembly","termid":"PBO:0086418"}


id: PBO:0073060
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SDA1 domain containing 1 pseudogene 2","termid":"PBO:0073060"}


id: GO:1905319
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of a mesenchymal stem cell from one site to another.","definition_xrefs":["PMID:25181476","GOC:TermGenie","PMID:24924806","GO_REF:0000091"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell migration","termid":"GO:0016477"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesenchymal stem cell migration","termid":"GO:1905319"}


id: GO:0030772
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine(1+) + L-tryptophan = S-adenosyl-L-homocysteine + L-2-methyltryptophan + H+.","definition_xrefs":["EC:2.1.1.106","RHEA:17321"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016741","GO:0016740"],"is_obsolete":false,"name":"tryptophan 2-C-methyltransferase activity","secondary_identifiers":["KEGG_REACTION:R08547","MetaCyc:RXN-16751"],"synonyms":[{"name":"S-adenosyl-L-methionine:L-tryptophan 2-C-methyltransferase activity","type":"related"},{"name":"S-adenosylmethionine:tryptophan 2-methyltransferase activity","type":"related"},{"name":"tryptophan 2-methyltransferase activity","type":"related"}],"termid":"GO:0030772"}


id: GO:0031018
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the endocrine pancreas over time, from its formation to the mature structure. The endocrine pancreas is made up of islet cells that produce insulin, glucagon and somatostatin.","definition_xrefs":["GOC:cvs"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"pancreas development","termid":"GO:0031016"},{"relation_name":"part_of","term_name":"endocrine system development","termid":"GO:0035270"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endocrine pancreas development","secondary_identifiers":["Reactome:R-HSA-186712"],"termid":"GO:0031018"}


id: PBO:0084819
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies","termid":"PBO:0084819"}


id: PBO:0069158
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 410, pseudogene","termid":"PBO:0069158"}


id: PBO:0027446
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_antisense_RNA_transcription_at_stress_response_genes","termid":"PBO:0027446"}


id: GO:0035469
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Determination of the asymmetric location of the pancreas with respect to the left and right halves of the organism.","definition_xrefs":["GOC:dgh","PMID:12702646"],"direct_ancestors":[{"relation_name":"is_a","term_name":"determination of left/right symmetry","termid":"GO:0007368"},{"relation_name":"part_of","term_name":"pancreas development","termid":"GO:0031016"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"determination of pancreatic left/right asymmetry","termid":"GO:0035469"}


id: GO:0018168
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The linkage of the chromophore phycoerythrobilin to phycoerythrocyanin via S-phycoerythrobilin-L-cysteine.","definition_xrefs":["RESID:AA0132"],"gene_count":0,"genotype_count":0,"name":"obsolete protein-phycoerythrobilin linkage via S-phycoerythrobilin-L-cysteine (obsolete GO:0018168)","termid":"GO:0018168"}


id: GO:0044780
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The assembly of a bacterial-type flagellum, a motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope which functions in cell motility.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell projection assembly","termid":"GO:0030031"},{"relation_name":"is_a","term_name":"bacterial-type flagellum organization","termid":"GO:0044781"},{"relation_name":"is_a","term_name":"membraneless organelle assembly","termid":"GO:0140694"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"bacterial-type flagellum assembly","synonyms":[{"name":"bacterial flagellum assembly","type":"exact"}],"termid":"GO:0044780"}


id: GO:0043095
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the activity of the enzyme GTP cyclohydrolase I.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of GTP cyclohydrolase I activity (obsolete GO:0043095)","termid":"GO:0043095"}


id: PBO:0109361
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed transcript, Y-linked 1","termid":"PBO:0109361"}


id: GO:0102987
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: palmitoleoyl-CoA + O2 + a reduced electron acceptor = (9Z,12Z)-hexadecadienoyl-CoA + 2 H2O + an oxidized electron acceptor.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete palmitoleic acid delta 12 desaturase activity (obsolete GO:0102987)","termid":"GO:0102987"}


id: PBO:0060966
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear transcription factor, X-box binding 1","termid":"PBO:0060966"}


id: GO:0003905
data:
  {"annotated_genes":["SJAG_01971"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[101943],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052820"},{"annotations":[101944],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008725"},{"annotations":[101945],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043916"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: DNA with alkylated base + H2O = DNA with abasic site + alkylated base. This reaction is the hydrolysis of DNA by cleavage of the N-C1' glycosidic bond between the target damaged DNA base and the deoxyribose sugar to remove an alkylated base, leaving an apyrimidinic or apurinic site.","definition_xrefs":["EC:3.2.2.21","GOC:elh","PMID:10872450","PMID:9224623"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA N-glycosylase activity","termid":"GO:0019104"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01971":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0140097"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0140097","GO:0016798","GO:0003674"],"is_obsolete":false,"name":"alkylbase DNA N-glycosylase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0004036","MetaCyc:3.2.2.21-RXN"],"synonyms":[{"name":"3-methyladenine DNA glycosylase II","type":"related"},{"name":"AlkA","type":"related"},{"name":"DNA glycosidase II activity","type":"related"},{"name":"DNA-3-methyladenine glycosidase II activity","type":"exact"},{"name":"DNA-3-methyladenine glycosylase II","type":"related"},{"name":"alkylated-DNA glycohydrolase (releasing methyladenine and methylguanine)","type":"broad"},{"name":"alkylbase DNA glycosidase activity","type":"exact"},{"name":"deoxyribonucleate 3-methyladenine glycosidase II","type":"related"}],"termid":"GO:0003905","terms_by_termid":{"GO:0008725":null,"GO:0043916":null,"GO:0052820":null}}


id: MONDO:0004597
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Localized necrosis of lung tissue caused by obstruction of the arterial blood supply, most often due to pulmonary embolism.","definition_xrefs":["NCIT:C50714"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete acute pulmonary heart disease (obsolete MONDO:0004595)","termid":"MONDO:0004595"},{"relation_name":"is_a","term_name":"lung disorder","termid":"MONDO:0005275"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pulmonary embolism and infarction","secondary_identifiers":["UMLS:C0034074","SCTID:64662007","ICD9:415.1","DOID:8516","MESH:D054060","MEDGEN:19577","ICD9:415.19"],"synonyms":[{"name":"infarction, pulmonary","type":"exact"},{"name":"lung infarction","type":"related"},{"name":"pulmonary infarction","type":"related"}],"termid":"MONDO:0004597","xrefs":{"Monarch":{"xref_id":"0004597"}}}


id: MONDO:0002733
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete MONDO:0002733 (obsolete MONDO:0002733)","termid":"MONDO:0002733","xrefs":{"Monarch":{"xref_id":"0002733"}}}


id: PBO:0004496
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.7.1.33","termid":"PBO:0004496"}


id: PBO:0048182
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GRB2 associated binding protein 3","termid":"PBO:0048182"}


id: PBO:0065259
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich 23C","termid":"PBO:0065259"}


id: GO:0004189
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the cleavage of the Glu-Tyr bond to release the C-terminal tyrosine residue from the native tyrosinated tubulin. Inactive on Z-Glu-Tyr.","definition_xrefs":["EC:3.4.17.17"],"gene_count":0,"genotype_count":0,"name":"obsolete tubulinyl-Tyr carboxypeptidase activity (obsolete GO:0004189)","synonyms":[{"name":"TTCPase activity","type":"related"},{"name":"brain I carboxypeptidase activity","type":"related"},{"name":"carboxypeptidase-tubulin activity","type":"related"},{"name":"soluble carboxypeptidase activity","type":"related"},{"name":"tubulin carboxypeptidase activity","type":"related"},{"name":"tubulin-tyrosine carboxypeptidase activity","type":"related"},{"name":"tubulinyl-Tyr carboxypeptidase activity","type":"exact"},{"name":"tubulinyl-tyrosine carboxypeptidase activity","type":"exact"},{"name":"tubulinyltyrosine carboxypeptidase activity","type":"related"},{"name":"tyrosinotubulin carboxypeptidase activity","type":"related"},{"name":"tyrosyltubulin carboxypeptidase activity","type":"related"}],"termid":"GO:0004189"}


id: GO:0019157
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: (S)-malate + O2 = H2O2 + oxaloacetate.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete malate oxidase activity (obsolete GO:0019157)","synonyms":[{"name":"(S)-malate:oxygen oxidoreductase activity","type":"exact"},{"name":"FAD-dependent malate oxidase activity","type":"exact"},{"name":"malic dehydrogenase II","type":"related"},{"name":"malic oxidase activity","type":"exact"}],"termid":"GO:0019157"}


id: GO:0019089
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The transfer of virions in order to create new infection.","definition_xrefs":["ISBN:0781702534"],"gene_count":0,"genotype_count":0,"name":"obsolete transmission of virus (obsolete GO:0019089)","synonyms":[{"name":"viral transmission","type":"exact"}],"termid":"GO:0019089"}


id: PBO:0064142
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PKN2 antisense RNA 1","termid":"PBO:0064142"}


id: FYPO:0004409
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to tetraplatin. Cells stop growing (and may die) at a concentration of tetraplatin that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000003","FYPO:0002683","FYPO:0005447","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to tetraplatin","synonyms":[{"name":"hypersensitive to tetraplatin","type":"exact"},{"name":"sensitive to tetraplatin during mitotic cell cycle","type":"related"},{"name":"sensitive to tetraplatin during vegetative growth","type":"exact"}],"termid":"FYPO:0004409"}


id: PBO:0078283
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Cys (anticodon GCA) 16-1","termid":"PBO:0078283"}


id: GO:0070675
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: hypoxanthine + H2O + O2 = xanthine + H2O2.","definition_xrefs":["GOC:pde","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on CH or CH2 groups, oxygen as acceptor","termid":"GO:0016727"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"hypoxanthine oxidase activity","secondary_identifiers":["Reactome:R-HSA-74247"],"synonyms":[{"name":"Schardinger enzyme activity","type":"related"},{"name":"hypoxanthine-xanthine oxidase activity","type":"broad"},{"name":"hypoxanthine:O2 oxidoreductase activity","type":"related"},{"name":"hypoxanthine:oxygen oxidoreductase activity","type":"related"},{"name":"schardinger enzyme","type":"related"},{"name":"xanthine oxidoreductase activity","type":"broad"}],"termid":"GO:0070675"}


id: PBO:0077588
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thymopoietin pseudogene 1","termid":"PBO:0077588"}


id: GO:0019017
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A viral genome that is divided into two or more physically separate molecules of nucleic acid and packaged into a single virion.","definition_xrefs":["ISBN:0121585336"],"gene_count":0,"genotype_count":0,"name":"obsolete segmented viral genome (obsolete GO:0019017)","termid":"GO:0019017"}


id: GO:0006682
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of galactosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of galactose by a ceramide group.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"galactosylceramide metabolic process","termid":"GO:0006681"},{"relation_name":"is_a","term_name":"galactolipid biosynthetic process","termid":"GO:0019375"},{"relation_name":"is_a","term_name":"glycosylceramide biosynthetic process","termid":"GO:0046476"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"galactosylceramide biosynthetic process","synonyms":[{"name":"galactosylceramide anabolism","type":"exact"},{"name":"galactosylceramide biosynthesis","type":"exact"},{"name":"galactosylceramide formation","type":"exact"},{"name":"galactosylceramide synthesis","type":"exact"}],"termid":"GO:0006682"}


id: GO:0042841
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of D-glucuronate, the D-enantiomer of glucuronate.","definition_xrefs":["GOC:jl","GOC:jsg","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"D-glucuronate metabolic process","termid":"GO:0042839"},{"relation_name":"is_a","term_name":"glucuronate biosynthetic process","termid":"GO:0046399"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"D-glucuronate biosynthetic process","synonyms":[{"name":"D-glucuronate anabolism","type":"exact"},{"name":"D-glucuronate biosynthesis","type":"exact"},{"name":"D-glucuronate formation","type":"exact"},{"name":"D-glucuronate synthesis","type":"exact"}],"termid":"GO:0042841"}


id: PBO:0029832
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-viable_curved_stubby_vegetative_cell","termid":"PBO:0029832"}


id: GO:0051066
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving a dihydrobiopterin, a reduced pteridine derivative related to folic acid; it acts as an electron carrier in tyrosine biosynthesis and its quinoid form is produced by oxidation of tetrahydrobiopterin in several biological hydroxylation reactions.","definition_xrefs":["PMID:2557335"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pteridine-containing compound metabolic process","termid":"GO:0042558"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dihydrobiopterin metabolic process","synonyms":[{"name":"6,7-dihydrobiopterin metabolic process","type":"narrow"},{"name":"7,8-dihydrobiopterin metabolic process","type":"narrow"},{"name":"dihydrobiopterin reduction","type":"narrow"},{"name":"dihydropterin metabolic process","type":"exact"},{"name":"dihydropterin metabolism","type":"exact"}],"termid":"GO:0051066"}


id: PBO:0015257
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"contractile ring myosin V regulator Rng9","termid":"PBO:0015257"}


id: PBO:0065725
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Prader-Willi region non-protein coding RNA 2","termid":"PBO:0065725"}


id: PBO:0089922
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-4 methylsterol oxidase Erg25","termid":"PBO:0089922"}


id: PBO:0055458
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2890","termid":"PBO:0055458"}


id: PBO:0060541
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NAV2 antisense RNA 1","termid":"PBO:0060541"}


id: PBO:0112840
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ERAD pathway protein","termid":"PBO:0112840"}


id: MONDO:0016789
data:
  {"annotated_genes":["SJAG_03553","SJAG_04334","SJAG_02009","SJAG_03660","SJAG_00839","SJAG_02006","SJAG_04495","SJAG_02158","SJAG_01924","SJAG_02796","SJAG_02369","SJAG_03247","SJAG_02107","SJAG_03290","SJAG_00866","SJAG_00461","SJAG_03310","SJAG_00605","SJAG_04192","SJAG_03064"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87422,87423],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011534"},{"annotations":[85522,85521,85520],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013046"},{"annotations":[87594],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010392"},{"annotations":[86204],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009865"},{"annotations":[86042],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009295"},{"annotations":[86545],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013275"},{"annotations":[86853,86854],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011236"},{"annotations":[87006],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013762"},{"annotations":[87626],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014674"},{"annotations":[85505,85506],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007453"},{"annotations":[86522],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013877"},{"annotations":[86828,86827],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009340"},{"annotations":[86774,86773],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0100165"},{"annotations":[86801],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010717"},{"annotations":[86287],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013580"},{"annotations":[87135],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009502"},{"annotations":[85576],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009529"},{"annotations":[87136],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009503"},{"annotations":[86799],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012120"},{"annotations":[85963],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009950"},{"annotations":[87538],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007067"},{"annotations":[86154],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014221"}]},"cv_name":"mondo","definition":"An inherited metabolic disease that is has its basis in the disruption of pyruvate metabolic process.","definition_xrefs":["MONDO:patterns/inborn_metabolic"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn disorder of amino acid and other organic acid metabolism","termid":"MONDO:0019189"},{"relation_name":"is_a","term_name":"inborn disorder of energy metabolism","termid":"MONDO:0019243"},{"relation_name":"is_a","term_name":"disorder of organic acid metabolism","termid":"MONDO:0045022"}],"gene_count":20,"genes_by_uniquename":{"SJAG_00461":null,"SJAG_00605":null,"SJAG_00839":null,"SJAG_00866":null,"SJAG_01924":null,"SJAG_02006":null,"SJAG_02009":null,"SJAG_02107":null,"SJAG_02158":null,"SJAG_02369":null,"SJAG_02796":null,"SJAG_03064":null,"SJAG_03247":null,"SJAG_03290":null,"SJAG_03310":null,"SJAG_03553":null,"SJAG_03660":null,"SJAG_04192":null,"SJAG_04334":null,"SJAG_04495":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"pyruvate metabolism disorder","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C0268192","MEDGEN:1842590","Orphanet:254746","GARD:20752"],"synonyms":[{"name":"inborn error of pyruvate metabolic process","type":"exact"},{"name":"inborn pyruvate metabolic process disorder","type":"exact"},{"name":"rare inborn error of pyruvate metabolic process","type":"exact"}],"termid":"MONDO:0016789","terms_by_termid":{"MONDO:0007067":null,"MONDO:0007453":null,"MONDO:0009295":null,"MONDO:0009340":null,"MONDO:0009502":null,"MONDO:0009503":null,"MONDO:0009529":null,"MONDO:0009865":null,"MONDO:0009950":null,"MONDO:0010392":null,"MONDO:0010717":null,"MONDO:0011236":null,"MONDO:0011534":null,"MONDO:0012120":null,"MONDO:0013046":null,"MONDO:0013275":null,"MONDO:0013580":null,"MONDO:0013762":null,"MONDO:0013877":null,"MONDO:0014221":null,"MONDO:0014674":null,"MONDO:0100165":null},"xrefs":{"Monarch":{"xref_id":"0016789"}}}


id: PBO:0048624
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gastric inhibitory polypeptide","termid":"PBO:0048624"}


id: GO:0044868
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a host organism modulates the frequency, rate or extent of any molecular function being mediated by a virus with which it is infected.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation by host of viral process","termid":"GO:0044788"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"modulation by host of viral molecular function","termid":"GO:0044868"}


id: MONDO:0012111
data:
  {"annotated_genes":["SJAG_00228"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86815],"is_not":false,"summary":null,"term":"MONDO:0012111"}]},"cv_name":"mondo","definition":"Any hypertrophic cardiomyopathy in which the cause of the disease is a mutation in the MYL3 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial hypertrophic cardiomyopathy","termid":"MONDO:0024573"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00228":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"hypertrophic cardiomyopathy 8","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0110314","UMLS:C1837471","MEDGEN:324806","MESH:C563866","OMIM:608751"],"synonyms":[{"name":"CMH8","type":"related"},{"name":"MYL3 hypertrophic cardiomyopathy","type":"exact"},{"name":"cardiomyopathy hypertrophic mid-left ventricular chamber type 1","type":"exact"},{"name":"cardiomyopathy, familial hypertrophic, 8","type":"exact"},{"name":"cardiomyopathy, familial hypertrophic, type 8","type":"exact"},{"name":"cardiomyopathy, hypertrophic, 8","type":"exact"},{"name":"cardiomyopathy, hypertrophic, mid-left ventricular chamber type, 1","type":"related"},{"name":"hypertrophic cardiomyopathy 8","type":"exact"},{"name":"hypertrophic cardiomyopathy caused by mutation in MYL3","type":"exact"},{"name":"hypertrophic cardiomyopathy type 8","type":"exact"}],"termid":"MONDO:0012111","terms_by_termid":{"MONDO:0012111":null},"xrefs":{"Monarch":{"xref_id":"0012111"}}}


id: GO:0047159
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1-O-(1Z-alkenyl)-sn-glycero-3-phosphocholine + an acyl-CoA = 1-O-(1Z-alkenyl)-2-acyl-sn-glycero-3-phosphocholine + CoA.","definition_xrefs":["RHEA:10344"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acyltransferase activity","termid":"GO:0008374"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0016746","GO:0003674"],"is_obsolete":false,"name":"plasmalogen synthase activity","secondary_identifiers":["EC:2.3.1.25","MetaCyc:PLASMALOGEN-SYNTHASE-RXN"],"synonyms":[{"name":"1-alkenylglycerophosphocholine O-acyltransferase activity","type":"related"},{"name":"acyl-CoA:1-alkenylglycerophosphocholine O-acyltransferase activity","type":"related"}],"termid":"GO:0047159"}


id: PBO:0054147
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1514","termid":"PBO:0054147"}


id: PBO:0054713
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2122","termid":"PBO:0054713"}


id: SO:0001823
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An inframe increase in cds length that inserts one or more codons into the coding sequence between existing codons.","definition_xrefs":["EBI:gr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inframe_insertion","termid":"SO:0001821"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conservative_inframe_insertion","synonyms":[{"name":"conservative increase in CDS length","type":"exact"},{"name":"conservative inframe insertion","type":"exact"}],"termid":"SO:0001823"}


id: PBO:0030062
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_acidic_medium","termid":"PBO:0030062"}


id: MONDO:1011707
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hematologic disorder, non-human animal","termid":"MONDO:1011319"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital dyserythropoietic anemia, non-human animal","secondary_identifiers":["OMIA:002300"],"termid":"MONDO:1011707","xrefs":{"Monarch":{"xref_id":"1011707"}}}


id: PBO:0068162
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 469","termid":"PBO:0068162"}


id: MONDO:0010080
data:
  {"annotated_genes":["SJAG_02274"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85572],"is_not":false,"summary":null,"term":"MONDO:0010080"}]},"cv_name":"mondo","definition":"The familial form of infantile bilateral striatal necrosis (IBSN), a syndrome of bilateral symmetric spongy degeneration of the caudate nucleus, putamen and globus pallidus characterized by developmental regression, choreoathetosis and dystonia progressing to spastic quadriparesis.","definition_xrefs":["Orphanet:225154"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"striatonigral degeneration","termid":"MONDO:0003122"},{"relation_name":"is_a","term_name":"infantile bilateral striatal necrosis","termid":"MONDO:0015518"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02274":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0021179"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0005066","MONDO:0021179"],"is_obsolete":false,"name":"familial infantile bilateral striatal necrosis","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:271930","GARD:17141","icd11.foundation:1873983370","MEDGEN:1672478","UMLS:C4087174"],"synonyms":[{"name":"FBSN","type":"related"},{"name":"SNDI","type":"related"},{"name":"bilateral striatal Necrosis, infantile","type":"related"},{"name":"familial IBSN","type":"exact"},{"name":"familial bilateral striatal necrosis","type":"related"},{"name":"familial infantile striatonigral degeneration","type":"exact"},{"name":"familial infantile striatonigral necrosis","type":"exact"},{"name":"hereditary infantile bilateral striatal necrosis","type":"exact"},{"name":"infantile bilateral striatal necrosis","type":"related"},{"name":"striatal degeneration, familial","type":"related"},{"name":"striatonigral degeneration, infantile","type":"related"}],"termid":"MONDO:0010080","terms_by_termid":{"MONDO:0010080":null},"xrefs":{"Monarch":{"xref_id":"0010080"}}}


id: MONDO:0019592
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. In gonochoristic organisms, congenital conditions in which development of chromosomal, gonadal, or anatomical sex is atypical. Effects from exposure to abnormal levels of gonadal hormones in the maternal environment, or disruption of the function of those hormones by ENDOCRINE DISRUPTORS are included.","definition_xrefs":["MESH:D012734"],"gene_count":0,"genotype_count":0,"name":"obsolete disorder of sex development (obsolete MONDO:0019592)","termid":"MONDO:0019592","xrefs":{"Monarch":{"xref_id":"0019592"}}}


id: PBO:0030711
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-binding_phenotype","termid":"PBO:0030711"}


id: FYPO:0009033
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of dihydrocoumarin than normal.","definition_xrefs":["PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002682"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000003","FYPO:0001985","FYPO:0002682","FYPO:0000139"],"is_obsolete":false,"name":"resistance to dihydrocoumarin","synonyms":[{"name":"resistance to dihydrocoumarin during mitotic cell cycle","type":"related"},{"name":"resistance to dihydrocoumarin during vegetative growth","type":"exact"},{"name":"resistant to dihydrocoumarin","type":"exact"}],"termid":"FYPO:0009033"}


id: PBO:0086154
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein required for pre-mRNA splicing; associates with the spliceosome and interacts with splicing factors Prp22p and Prp46p; orthologous to human transcriptional coactivator SKIP and can activate transcription of a reporter gene","termid":"PBO:0086154"}


id: PBO:0061682
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NUP107 divergent transcript","termid":"PBO:0061682"}


id: PBO:0063748
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PHB1 pseudogene 13","termid":"PBO:0063748"}


id: _global:capable_of_negatively_regulating
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p.","direct_ancestors":[{"relation_name":"is_a","term_name":"capable_of_regulating","termid":"_global:capable_of_regulating"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"capable_of_negatively_regulating","secondary_identifiers":["RO:0002597"],"termid":"_global:capable_of_negatively_regulating"}


id: PBO:0003716
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase regulator Nrf1","termid":"PBO:0003716"}


id: PBO:0040107
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-acylsphingosine amidohydrolase 2","termid":"PBO:0040107"}


id: MONDO:0017560
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An abnormal alignment of the knee backwards that is due to a deformity in the knee joint.","definition_xrefs":["NCIT:C103184"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital knee dislocation","termid":"MONDO:0017470"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital genu recurvatum","secondary_identifiers":["ICD9:754.40","UMLS:C0152235","GARD:21225","MEDGEN:508941","Orphanet:295229","SCTID:205063003","icd11.foundation:1709221347"],"synonyms":[{"name":"genu recurvatum","type":"exact"},{"name":"hyperextension deformity of knee","type":"exact"},{"name":"hyperextension of knee deformity","type":"exact"}],"termid":"MONDO:0017560","xrefs":{"Monarch":{"xref_id":"0017560"}}}


id: GO:0070537
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A protein deubiquitination process in which a K63-linked ubiquitin chain, i.e. a polymer of ubiquitin formed by linkages between lysine residues at position 63 of the ubiquitin monomers, is removed from a lysine residue in histone H2A or the variant H2AX.","definition_xrefs":["PMID:19202061","PMID:19214193","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H2A K63-linked deubiquitination (obsolete GO:0070537)","termid":"GO:0070537"}


id: MONDO:0025028
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A viral disease caused by at least two distinct species (serotypes) in the vesiculovirus genus: vesicular stomatitis indiana virus and vesicular stomatitis new jersey virus. It is characterized by vesicular eruptions on the oral mucosa in cattle, horses, pigs, and other animals. In humans, vesicular stomatitis causes an acute influenza-like illness.","definition_xrefs":["MESH:D054243"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Rhabdoviridae infectious disease, non-human animal","termid":"MONDO:0700072"},{"relation_name":"is_a","term_name":"inflammatory disease, non-human animal","termid":"MONDO:1011327"},{"relation_name":"is_a","term_name":"mouth mucosa disorder, non-human animal","termid":"MONDO:1011334"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vesicular stomatitis","secondary_identifiers":["SCTID:36921006"],"synonyms":[{"name":"Stomatitides, vesicular","type":"related"},{"name":"stomatitis, vesicular","type":"related"},{"name":"vesicular Stomatitides","type":"related"}],"termid":"MONDO:0025028","xrefs":{"Monarch":{"xref_id":"0025028"}}}


id: MONDO:1012173
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"dysphagia-associated muscular dystrophy, non-human animal","termid":"MONDO:1011790"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dysphagia-associated muscular dystrophy, dog","secondary_identifiers":["OMIA:000681-9615"],"termid":"MONDO:1012173","xrefs":{"Monarch":{"xref_id":"1012173"}}}


id: GO:2000500
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of induction of apoptosis in response to chemical stimulus.","definition_xrefs":["GOC:obol","GOC:mtg_apoptosis"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of induction of apoptosis in response to chemical stimulus (obsolete GO:2000500)","synonyms":[{"name":"positive regulation of induction of apoptosis in response to chemical stimulus","type":"exact"},{"name":"positive regulation of induction of apoptosis in response to chemical substance","type":"exact"}],"termid":"GO:2000500"}


id: PBO:0086835
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function with similarity to Pip2p; an oleate-specific transcriptional activator of peroxisome proliferation; YLL054C is not an essential gene","termid":"PBO:0086835"}


id: MONDO:0018026
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The presence of four sets of chromosomes. It is associated with abnormalities, multiple; and miscarrages.","definition_xrefs":["MESH:D057891"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyploidy","termid":"MONDO:0019934"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetraploidy syndrome","secondary_identifiers":["icd11.foundation:1705084192","GARD:5151","Orphanet:3305","SCTID:726363000","MEDGEN:163193","UMLS:C0795884"],"synonyms":[{"name":"tetraploidy","type":"exact"}],"termid":"MONDO:0018026","xrefs":{"Monarch":{"xref_id":"0018026"}}}


id: GO:0005536
data:
  {"annotated_genes":["SJAG_04334","SJAG_04495"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[57369,64797],"is_not":false,"summary":null,"term":"GO:0005536"}]},"cv_name":"molecular_function","definition":"Binding to D-enantiomers of glucose.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monosaccharide binding","termid":"GO:0048029"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04334":null,"SJAG_04495":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"D-glucose binding","references_by_uniquename":{"GO_REF:0000002":null},"synonyms":[{"name":"glucose binding","type":"broad"}],"termid":"GO:0005536","terms_by_termid":{"GO:0005536":null}}


id: PBO:0069881
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1169, pseudogene","termid":"PBO:0069881"}


id: PBO:0005733
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Helicase Required for RNAi-mediated heterochromatin assembly Hrr1","termid":"PBO:0005733"}


id: PBO:0058467
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 5196","termid":"PBO:0058467"}


id: PBO:0059763
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO3 pseudogene 37","termid":"PBO:0059763"}


id: GO:0052774
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: glucosyl-N-acetylglucosamine + H2O = glucosamine + N-acetylglucosamine.","definition_xrefs":["PMID:16232910","PMID:15136574","PMID:16736587","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosaminidase activity","termid":"GO:0015929"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016798","GO:0016787"],"is_obsolete":false,"name":"glucosyl-N-acetylglucosamine glucosaminidase activity","termid":"GO:0052774"}


id: GO:0003944
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: glycoprotein N-acetyl-D-glucosaminyl-phospho-D-mannose + H2O = N-acetyl-D-glucosamine + glycoprotein phospho-D-mannose.","definition_xrefs":["EC:3.1.4.45"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosaminidase activity","termid":"GO:0015929"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016798","GO:0003674","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase activity","secondary_identifiers":["MetaCyc:3.1.4.45-RXN","RHEA:24372"],"synonyms":[{"name":"2-acetamido-2-deoxy-alpha-D-glucose 1-phosphodiester acetamidodeoxyglucohydrolase activity","type":"related"},{"name":"alpha-N-acetyl-D-glucosamine-1-phosphodiester N-acetylglucosaminidase activity","type":"related"},{"name":"alpha-N-acetylglucosaminyl phosphodiesterase activity","type":"related"},{"name":"glycoprotein-N-acetyl-D-glucosaminyl-phospho-D-mannose N-acetyl-D-glucosaminylphosphohydrolase activity","type":"related"},{"name":"lysosomal alpha-N-acetylglucosaminidase activity","type":"narrow"},{"name":"phosphodiester glycosidase activity","type":"related"}],"termid":"GO:0003944"}


id: PBO:0067710
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal 8","termid":"PBO:0067710"}


id: GO:0002551
data:
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id: GO:1905505
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id: PBO:0028047
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id: MONDO:0013878
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id: GO:1902531
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id: PBO:0001289
data:
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id: PR:Q9UTS5-2
data:
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id: MONDO:0005283
data:
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id: SO:0100018
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  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A polypeptide binding motif is a short (up to 20 amino acids) polypeptide region of biological interest that contains one or more amino acids experimentally shown to bind to a ligand.","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biochemical_region_of_peptide","termid":"SO:0100001"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"polypeptide_binding_motif","synonyms":[{"name":"binding","type":"related"},{"name":"polypeptide binding motif","type":"exact"}],"termid":"SO:0100018"}


id: GO:2000485
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id: GO:0055007
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cardiac muscle precursor cell acquires specialized features of a cardiac muscle cell. Cardiac muscle cells are striated muscle cells that are responsible for heart contraction.","definition_xrefs":["GOC:devbiol","GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiocyte differentiation","termid":"GO:0035051"},{"relation_name":"is_a","term_name":"striated muscle cell differentiation","termid":"GO:0051146"},{"relation_name":"part_of","term_name":"cardiac muscle tissue development","termid":"GO:0048738"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac muscle cell differentiation","synonyms":[{"name":"cardiomyocyte differentiation","type":"exact"},{"name":"heart muscle cell differentiation","type":"related"}],"termid":"GO:0055007"}


id: GO:0019779
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id: PBO:0017940
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id: GO:0019318
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id: PBO:0077442
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id: GO:0019623
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of atrazine, a triazine ring-containing herbicide, into urea.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"atrazine catabolic process","termid":"GO:0019381"},{"relation_name":"is_a","term_name":"urea metabolic process","termid":"GO:0019627"},{"relation_name":"is_a","term_name":"amide catabolic process","termid":"GO:0043605"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0071941"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0071941","GO:0044281"],"is_obsolete":false,"name":"atrazine catabolic process to urea","synonyms":[{"name":"atrazine breakdown to urea","type":"exact"},{"name":"atrazine degradation to urea","type":"exact"}],"termid":"GO:0019623"}


id: PBO:0077862
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id: PBO:0027698
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id: GO:0097033
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id: PBO:0040122
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat and SOCS box containing 9","termid":"PBO:0040122"}


id: FYPO:0008132
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id: PBO:0109382
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed transcript, Y-linked 13","termid":"PBO:0109382"}


id: PBO:0028418
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id: PBO:0060807
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NDUFV1 divergent transcript","termid":"PBO:0060807"}


id: PBO:0027387
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  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_level_in_stationary_phase","termid":"PBO:0027387"}


id: MONDO:0037250
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplasm that arises from the testis during childhood.","definition_xrefs":["NCIT:C5053"],"direct_ancestors":[{"relation_name":"is_a","term_name":"childhood neoplasm","termid":"MONDO:0021079"},{"relation_name":"is_a","term_name":"neoplasm of testis","termid":"MONDO:0021348"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"childhood testicular neoplasm","secondary_identifiers":["UMLS:C1333010","MEDGEN:272472"],"synonyms":[{"name":"childhood neoplasm of testis","type":"exact"},{"name":"childhood neoplasm of the testis","type":"exact"},{"name":"childhood testicular neoplasm","type":"exact"},{"name":"neoplasm of testis of childhood","type":"exact"},{"name":"paediatric neoplasm of testis","type":"exact"},{"name":"paediatric neoplasm of the testis","type":"exact"},{"name":"paediatric testicular neoplasm","type":"exact"},{"name":"pediatric neoplasm of testis","type":"exact"},{"name":"pediatric neoplasm of the testis","type":"exact"},{"name":"pediatric testicular neoplasm","type":"exact"},{"name":"testicular tumor, childhood","type":"exact"}],"termid":"MONDO:0037250","xrefs":{"Monarch":{"xref_id":"0037250"}}}


id: GO:0032966
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of collagen, any of a group of fibrous proteins of very high tensile strength that form the main component of connective tissue in animals.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of biosynthetic process","termid":"GO:0009890"},{"relation_name":"is_a","term_name":"negative regulation of collagen metabolic process","termid":"GO:0010713"},{"relation_name":"is_a","term_name":"regulation of collagen biosynthetic process","termid":"GO:0032965"},{"relation_name":"negatively_regulates","term_name":"collagen biosynthetic process","termid":"GO:0032964"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of collagen biosynthetic process","synonyms":[{"name":"negative regulation of collagen anabolism","type":"exact"},{"name":"negative regulation of collagen biosynthesis","type":"exact"},{"name":"negative regulation of collagen formation","type":"exact"},{"name":"negative regulation of collagen synthesis","type":"exact"}],"termid":"GO:0032966"}


id: GO:0051472
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving glucosylglycerol, alpha-D-glucopyranosyl-alpha-(1,2)-glycerol.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycoside metabolic process","termid":"GO:0016137"},{"relation_name":"is_a","term_name":"alditol metabolic process","termid":"GO:0019400"},{"relation_name":"is_a","term_name":"glucan metabolic process","termid":"GO:0044042"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975","GO:0044281"],"is_obsolete":false,"name":"glucosylglycerol metabolic process","synonyms":[{"name":"glucosylglycerol metabolism","type":"exact"}],"termid":"GO:0051472"}


id: PBO:0073072
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syndecan binding protein pseudogene 1","termid":"PBO:0073072"}


id: GO:0052079
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which an organism activates, maintains or increases the frequency, rate or extent of a host MAP kinase-mediated signal transduction pathway during the host innate immune response. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete induction by symbiont of defense-related host MAP kinase-mediated signal transduction pathway (obsolete GO:0052079)","synonyms":[{"name":"activation by organism of defense-related host MAP kinase-mediated signal transduction pathway","type":"narrow"},{"name":"activation by symbiont of defense-related host MAP kinase-mediated signal transduction pathway","type":"narrow"},{"name":"induction by organism of defense-related host MAP kinase-mediated signal transduction pathway","type":"narrow"},{"name":"positive regulation by organism of defense-related MAP kinase-mediated signal transduction pathway in other organism involved in symbiotic interaction","type":"broad"},{"name":"positive regulation by organism of defense-related host MAPK-mediated signal transduction pathway","type":"exact"},{"name":"positive regulation by organism of defense-related host mitogen-activated protein kinase-mediated signal transduction pathway","type":"exact"},{"name":"positive regulation by symbiont of defense-related host MAP kinase-mediated signal transduction pathway","type":"exact"},{"name":"stimulation by symbiont of defense-related host MAP kinase-mediated signal transduction pathway","type":"narrow"},{"name":"up regulation by symbiont of defense-related host MAP kinase-mediated signal transduction pathway","type":"exact"},{"name":"up-regulation by symbiont of defense-related host MAP kinase-mediated signal transduction pathway","type":"exact"},{"name":"upregulation by organism of defense-related host MAP kinase-mediated signal transduction pathway","type":"narrow"},{"name":"upregulation by symbiont of defense-related host MAP kinase-mediated signal transduction pathway","type":"exact"}],"termid":"GO:0052079"}


id: MONDO:0004601
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Ulcer of lower limbs is a chronic ulcer of skin where the ulcer is not a decubitus ulcer.","definition_xrefs":["DOID:8529"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chronic ulcer of skin","termid":"MONDO:0004605"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"ulcer of lower limbs","secondary_identifiers":["MEDGEN:9701","SCTID:419193008","UMLS:C0023223","ICD9:707.13"],"synonyms":[{"name":"Ulcer of ankle","type":"narrow"},{"name":"Ulcer of calf","type":"narrow"},{"name":"Ulcer of heel and midfoot","type":"narrow"},{"name":"Ulcer of thigh","type":"narrow"}],"termid":"MONDO:0004601","xrefs":{"Monarch":{"xref_id":"0004601"}}}


id: PBO:0087403
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Structural component of 3 complexes; subunit of the Nup84p nuclear pore subcomplex that contributes to nucleocytoplasmic transport and NPC biogenesis; subunit of the COPII vesicle coat required for ER-to-Golgi transport; subunit of SEACAT, a subcomplex of the coatomer-related, vacuolar-associated SEA complex, that inhibits the TORC1 inhibitory role of SEACIT (Iml1p-Npr2p-Npr3p), a GAP for Gtr1p, thereby resulting in activation of TORC1 signaling; human SEC13 homolog","termid":"PBO:0087403"}


id: PBO:0042120
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 192","termid":"PBO:0042120"}


id: PBO:0067562
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 715, pseudogene","termid":"PBO:0067562"}


id: PBO:0017070
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces specific protein, double strand break localizing Dbl1","termid":"PBO:0017070"}


id: PBO:0091582
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase assembly protein Cox1102/ mitochondrial ribosomal protein Rsm2202, fusion protein","termid":"PBO:0091582"}


id: MONDO:0033282
data:
  {"annotated_genes":["SJAG_03701"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85721],"is_not":false,"summary":null,"term":"MONDO:0033282"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"fatal multiple mitochondrial dysfunctions syndrome","termid":"MONDO:0017338"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03701":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0002525"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004069","MONDO:0002525"],"is_obsolete":false,"name":"multiple mitochondrial dysfunctions syndrome 5","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0080274","MEDGEN:1623132","Orphanet:569274","GARD:22305","UMLS:C4539919","OMIM:617613"],"synonyms":[{"name":"MMDS5","type":"related"},{"name":"multiple mitochondrial dysfunctions syndrome 5","type":"exact"}],"termid":"MONDO:0033282","terms_by_termid":{"MONDO:0033282":null},"xrefs":{"Monarch":{"xref_id":"0033282"}}}


id: GO:0047609
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N-acetylputrescine + H2O = acetate + putrescine.","definition_xrefs":["RHEA:23412","EC:3.5.1.62"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"},{"relation_name":"is_a","term_name":"deacetylase activity","termid":"GO:0019213"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0019213"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016810"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0016810","GO:0003674","GO:0019213"],"is_obsolete":false,"name":"acetylputrescine deacetylase activity","secondary_identifiers":["KEGG_REACTION:R01156","MetaCyc:ACETYLPUTRESCINE-DEACETYLASE-RXN"],"synonyms":[{"name":"N-acetylputrescine acetylhydrolase activity","type":"related"}],"termid":"GO:0047609"}


id: SO:0000639
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Non-coding regions of DNA sequence that separate genes coding for the 28S, 5.8S, and 18S ribosomal RNAs.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcribed_spacer_region","termid":"SO:0000638"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"internal_transcribed_spacer_region","synonyms":[{"name":"internal transcribed spacer region","type":"exact"}],"termid":"SO:0000639"}


id: MONDO:0020270
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete pigmentation disorder with eye involvement (obsolete MONDO:0020270)","secondary_identifiers":["Orphanet:98700"],"termid":"MONDO:0020270","xrefs":{"Monarch":{"xref_id":"0020270"}}}


id: GO:0005462
data:
  {"annotated_genes":["SJAG_00434"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[77966],"is_not":false,"summary":null,"term":"GO:0005462"}]},"cv_name":"molecular_function","definition":"Enables the transfer of a UDP-N-acetylglucosamine from one side of a membrane to the other. N-acetylglucosamine is a substance composed of N-acetylglucosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate.","definition_xrefs":["ISBN:0815340729","GOC:ai","GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic anion transmembrane transporter activity","termid":"GO:0008514"},{"relation_name":"is_a","term_name":"pyrimidine nucleotide-sugar transmembrane transporter activity","termid":"GO:0015165"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00434":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"UDP-N-acetylglucosamine transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-5653622","Reactome:R-HSA-741450","Reactome:R-HSA-742354"],"termid":"GO:0005462","terms_by_termid":{"GO:0005462":null}}


id: PBO:0049223
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GRK5 intronic transcript 1","termid":"PBO:0049223"}


id: GO:0044133
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The increase in size or mass of a symbiont within the cells or tissues of its host organism.","definition_xrefs":["GOC:jl","GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete growth of symbiont on or near host (obsolete GO:0044133)","termid":"GO:0044133"}


id: GO:0019156
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of alpha-(1,6)-D-glucosidic branch linkages in glycogen, amylopectin and their beta-limits dextrins.","definition_xrefs":["EC:3.2.1.68"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016787","GO:0016798"],"is_obsolete":false,"name":"isoamylase activity","secondary_identifiers":["MetaCyc:3.2.1.68-RXN"],"synonyms":[{"name":"debranching enzyme activity","type":"broad"},{"name":"glycogen alpha-1,6-glucanohydrolase activity","type":"related"}],"termid":"GO:0019156"}


id: PBO:0014289
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae CDC15","termid":"PBO:0014289"}


id: GO:0052524
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of the salicylic acid-mediated defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation by organism of symbiont salicylic acid-mediated defense response (obsolete GO:0052524)","synonyms":[{"name":"induction by organism of symbiont SA-mediated defense response","type":"narrow"},{"name":"induction by organism of symbiont salicylic acid-mediated defense response","type":"narrow"},{"name":"positive regulation by organism of symbiont SA-mediated defense response","type":"exact"},{"name":"positive regulation by organism of symbiont salicylic acid-mediated defense response","type":"exact"}],"termid":"GO:0052524"}


id: PBO:0110492
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L32 pseudogene 37","termid":"PBO:0110492"}


id: MONDO:0020038
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete gonadal dysgenesis of gynecological interest (obsolete MONDO:0020038)","secondary_identifiers":["Orphanet:98074"],"termid":"MONDO:0020038","xrefs":{"Monarch":{"xref_id":"0020038"}}}


id: PBO:0003625
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein Mrd1 (predicted)","termid":"PBO:0003625"}


id: PBO:0039603
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acidic nuclear phosphoprotein 32 family member C","termid":"PBO:0039603"}


id: PBO:0065706
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pseudouridine synthase 7","termid":"PBO:0065706"}


id: GO:0033855
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-oxoglutarate + nicotianamine = 3''-deamino-3''-oxonicotianamine + L-glutamate.","definition_xrefs":["EC:2.6.1.80","RHEA:22104"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016740","GO:0016769"],"is_obsolete":false,"name":"nicotianamine aminotransferase activity","secondary_identifiers":["KEGG_REACTION:R07277","MetaCyc:2.6.1.80-RXN"],"synonyms":[{"name":"NAAT","type":"related"},{"name":"NAAT-I","type":"related"},{"name":"NAAT-II","type":"related"},{"name":"NAAT-III","type":"related"},{"name":"nicotianamine transaminase activity","type":"related"},{"name":"nicotianamine:2-oxoglutarate aminotransferase activity","type":"related"}],"termid":"GO:0033855"}


id: PBO:0057276
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 499a","termid":"PBO:0057276"}


id: MONDO:0100144
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A tubulinopathy with material basis in TUBB2B that is characterized by variations in R390Q, quadrupedal locomotion, cerebellar hypoplasia and does not have basal ganglia malformations.","definition_xrefs":["PMID:28013290"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"tubulinopathy","termid":"MONDO:0100153"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025"],"is_obsolete":false,"name":"Uner Tan Syndrome","synonyms":[{"name":"recessive quadrupedalism","type":"exact"}],"termid":"MONDO:0100144","xrefs":{"Monarch":{"xref_id":"0100144"}}}


id: PBO:0030603
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-mistimed_mitosis","termid":"PBO:0030603"}


id: MONDO:0018300
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete genetic hyperaldosteronism (obsolete MONDO:0018300)","termid":"MONDO:0018300","xrefs":{"Monarch":{"xref_id":"0018300"}}}


id: PBO:0050740
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family E (Hsp10) member 1 pseudogene 2","termid":"PBO:0050740"}


id: PBO:0084922
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Monocarboxylate/proton symporter of the plasma membrane; transport activity is dependent on the pH gradient across the membrane; mediates high-affinity uptake of carbon sources lactate, pyuvate, and acetate, and also of the micronutrient selenite, whose structure mimics that of monocarboxylates; expression and localization are tightly regulated, with transcription repression, mRNA degradation, and protein endocytosis and degradation all occurring in the presence of glucose","termid":"PBO:0084922"}


id: PBO:0049752
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydroxycarboxylic acid receptor 2","termid":"PBO:0049752"}


id: MONDO:0011916
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autosomal recessive Charcot-Marie-Tooth disease with hoarseness (ARCMT2K or CMT4C4) is a severe early-onset form of axonal CMT peripheral sensorimotor polyneuropathy.","definition_xrefs":["Orphanet:101097"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Charcot-Marie-Tooth disease type 2","termid":"MONDO:0018993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244"],"is_obsolete":false,"name":"Charcot-Marie-Tooth disease axonal type 2K","secondary_identifiers":["UMLS:C1842983","GARD:12448","MEDGEN:375064","DOID:0110167","OMIM:607831","SCTID:725047007"],"synonyms":[{"name":"ARCMT2K","type":"exact"},{"name":"CMT2K","type":"related"},{"name":"Charcot-Marie-Tooth disease, autosomal dominant, type 2K","type":"related"},{"name":"Charcot-Marie-Tooth disease, axonal, autosomal dominant, type 2K","type":"exact"},{"name":"Charcot-Marie-Tooth disease, axonal, autosomal recessive, type 2K","type":"related"},{"name":"Charcot-Marie-Tooth disease, axonal, type 2K","type":"related"},{"name":"Charcot-Marie-Tooth neuropathy axonal type 2K","type":"exact"},{"name":"Charcot-Marie-Tooth neuropathy, axonal, type 2K","type":"related"},{"name":"autosomal recessive Charcot-Marie-Tooth disease with hoarseness","type":"exact"},{"name":"autosomal recessive axonal CMT4C4","type":"exact"},{"name":"autosomal recessive axonal Charcot-Marie-Tooth disease disease type 2K","type":"exact"},{"name":"autosomal recessive axonal Charcot-Marie-Tooth disease type 2K","type":"exact"}],"termid":"MONDO:0011916","xrefs":{"Monarch":{"xref_id":"0011916"}}}


id: PR:O42895
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- afg1 gene.","definition_xrefs":["UniProtKB:O42895","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C115.02c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC115.02c","synonyms":[{"name":"Spom972h-afg1","type":"exact"}],"termid":"PR:O42895"}


id: GO:0099556
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Cell-cell signaling between presynapse and postsynapse, via the release and reception of carbon monoxide molecules, that modulates the synaptic transmission properties of the synapse.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trans-synaptic signaling by carbon monoxide","termid":"GO:0099549"},{"relation_name":"is_a","term_name":"trans-synaptic signaling by soluble gas, modulating synaptic transmission","termid":"GO:0099554"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"trans-synaptic signaling by carbon monoxide, modulating synaptic transmission","termid":"GO:0099556"}


id: PBO:0086349
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"P-type ATPase, ion transporter of the ER membrane; required to maintain normal lipid and sterol composition of intracellular compartments and proper targeting of mitochondrial outer membrane tail-anchored proteins; involved in ER function and Ca2+ homeostasis; required for regulating Hmg2p degradation; confers sensitivity to a killer toxin (SMKT) produced by Pichia farinosa KK1; null mutation is complemented by human Parkinson disease-related ATP13A1","termid":"PBO:0086349"}


id: PBO:0044235
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cullin 4A pseudogene 1","termid":"PBO:0044235"}


id: PBO:0077141
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tight junction protein 1 pseudogene 1","termid":"PBO:0077141"}


id: PATO:0000067
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000067 relative pilosity (obsolete PATO:0000067)","termid":"PATO:0000067"}


id: PBO:0068521
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 116, pseudogene","termid":"PBO:0068521"}


id: MONDO:0001110
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Persistent pyelonephritis.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chronic kidney disease","termid":"MONDO:0005300"},{"relation_name":"is_a","term_name":"pyelonephritis","termid":"MONDO:0006939"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"chronic pyelonephritis","secondary_identifiers":["icd11.foundation:1346439976","MEDGEN:39090","UMLS:C0085697","NANDO:2100012","DOID:1076","NCIT:C123216","ICD9:590.0","SCTID:63302006","NANDO:2200137"],"synonyms":[{"name":"pyelonephritis, chronic","type":"exact"}],"termid":"MONDO:0001110","xrefs":{"Monarch":{"xref_id":"0001110"}}}


id: PBO:0030019
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-viable_thin,_elongated_vegetative_cell","termid":"PBO:0030019"}


id: PBO:0060852
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NEK2 divergent transcript","termid":"PBO:0060852"}


id: PBO:0034086
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-towards","termid":"PBO:0034086"}


id: GO:0015452
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Primary active transport of a solute across a membrane driven by a methyl transfer reaction. Primary active transport is catalysis of the transport of a solute across a membrane, up the solute's concentration gradient, by binding the solute and undergoing a series of conformational changes. Transport works equally well in either direction and is driven by a primary energy source.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729","TC:3.C.-.-.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary active transmembrane transporter activity","termid":"GO:0015399"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"methyl transfer-driven active transmembrane transporter activity","secondary_identifiers":["TC:3.C"],"synonyms":[{"name":"Methyltransfer-driven transporters","type":"exact"}],"termid":"GO:0015452"}


id: PBO:0069444
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 709, pseudogene","termid":"PBO:0069444"}


id: PBO:0051516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 1 alpha","termid":"PBO:0051516"}


id: FYPO:0006244
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitotic chromosome condensation does not occur over short (less than 90 kb) ranges within a chromosome arm.","definition_xrefs":["PomBase:mah","PMID:28825727"],"gene_count":0,"genotype_count":0,"name":"obsolete abolished short range intra-arm mitotic chromosome condensation during interphase (obsolete FYPO:0006244)","termid":"FYPO:0006244"}


id: PATO:0002493
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed anteroventrally.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"orientation","termid":"PATO:0000133"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anteroventral orientation","synonyms":[{"name":"anteroventrally directed","type":"exact"}],"termid":"PATO:0002493"}


id: GO:0002648
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of central tolerance induction.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of tolerance induction","termid":"GO:0002645"},{"relation_name":"is_a","term_name":"regulation of central tolerance induction","termid":"GO:0002646"},{"relation_name":"positively_regulates","term_name":"central tolerance induction","termid":"GO:0002508"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of central tolerance induction","synonyms":[{"name":"activation of central tolerance induction","type":"narrow"},{"name":"stimulation of central tolerance induction","type":"narrow"},{"name":"up regulation of central tolerance induction","type":"exact"},{"name":"up-regulation of central tolerance induction","type":"exact"},{"name":"upregulation of central tolerance induction","type":"exact"}],"termid":"GO:0002648"}


id: PBO:0042769
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centrosomal protein 72","termid":"PBO:0042769"}


id: PBO:0041965
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 8","termid":"PBO:0041965"}


id: PBO:0043411
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CKLF like MARVEL transmembrane domain containing 8","termid":"PBO:0043411"}


id: PBO:0086255
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that promotes the transport and maturation of Pma1 with Exp1; cleaved specifically by Kex2p; localizes to the Golgi apparatus and to the endoplasmic reticulum in HTP studies","termid":"PBO:0086255"}


id: PBO:0071260
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L23 pseudogene 5","termid":"PBO:0071260"}


id: PBO:0080419
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VPS51 pseudogene 3","termid":"PBO:0080419"}


id: GO:0008825
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid = S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid.","definition_xrefs":["EC:2.1.1.79"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016741"],"is_obsolete":false,"name":"cyclopropane-fatty-acyl-phospholipid synthase activity","secondary_identifiers":["MetaCyc:2.1.1.79-RXN","RHEA:11988"],"synonyms":[{"name":"CFA synthase activity","type":"related"},{"name":"S-adenosyl-L-methionine:unsaturated-phospholipid methyltransferase (cyclizing)","type":"related"},{"name":"cyclopropane fatty acid synthase activity","type":"related"},{"name":"cyclopropane fatty acid synthetase activity","type":"related"},{"name":"cyclopropane synthase activity","type":"related"},{"name":"cyclopropane synthetase activity","type":"broad"},{"name":"unsaturated-phospholipid methyltransferase activity","type":"broad"}],"termid":"GO:0008825"}


id: MONDO:0859136
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"Alzahrani-Kuwahara syndrome","secondary_identifiers":["OMIM:619268","UMLS:C5543274","MEDGEN:1782127","GARD:18544"],"termid":"MONDO:0859136","xrefs":{"Monarch":{"xref_id":"0859136"}}}


id: PATO:0002095
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A disposition inhering in a tumour to progress or fail to progress during it's life time.","definition_xrefs":["PATOC:GVG"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0002095 neoplasm disposition (obsolete PATO:0002095)","termid":"PATO:0002095"}


id: GO:0018281
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The formation of a C-terminal peptidyl-serine ethanolamide-linked glycosylsphingolipidinositol (GSI) anchor following hydrolysis of a seryl-peptide bond in the carboxy-terminal region of a membrane-associated protein.","definition_xrefs":["RESID:AA0166"],"gene_count":0,"genotype_count":0,"name":"obsolete GSI anchor biosynthetic process via N-seryl-glycosylsphingolipidinositolethanolamine (obsolete GO:0018281)","synonyms":[{"name":"GSI anchor anabolism via N-seryl-glycosylsphingolipidinositolethanolamine","type":"exact"},{"name":"GSI anchor formation via N-seryl-glycosylsphingolipidinositolethanolamine","type":"exact"},{"name":"GSI anchor synthesis via N-seryl-glycosylsphingolipidinositolethanolamine","type":"exact"}],"termid":"GO:0018281"}


id: PBO:0064082
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylserine decarboxylase","termid":"PBO:0064082"}


id: GO:0047725
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: sucrose + 2,1-beta-D-fructosyl(n) = glucose + 2,1-beta-D-fructosyl(n+1).","definition_xrefs":["EC:2.4.1.9"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016757","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"inulosucrase activity","secondary_identifiers":["MetaCyc:RXN-15518","RHEA:15745"],"synonyms":[{"name":"sucrose 1-fructosyl transferase activity","type":"related"},{"name":"sucrose 1-fructosyltransferase activity","type":"related"},{"name":"sucrose:2,1-beta-D-fructan 1-beta-D-fructosyltransferase activity","type":"related"}],"termid":"GO:0047725"}


id: GO:0033494
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving ferulate, (2E)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enoate.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ether metabolic process","termid":"GO:0018904"},{"relation_name":"is_a","term_name":"phenol-containing compound metabolic process","termid":"GO:0018958"},{"relation_name":"is_a","term_name":"monocarboxylic acid metabolic process","termid":"GO:0032787"},{"relation_name":"is_a","term_name":"olefinic compound metabolic process","termid":"GO:0120254"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"ferulate metabolic process","synonyms":[{"name":"ferulate metabolism","type":"exact"}],"termid":"GO:0033494"}


id: MONDO:1011201
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Schmid metaphyseal chondrodysplasia dwarfism that occurs in pig.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"schmid metaphyseal chondrodysplasia dwarfism, non-human animal","termid":"MONDO:1010310"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"schmid metaphyseal chondrodysplasia dwarfism, pig","secondary_identifiers":["OMIA:001718-9823"],"termid":"MONDO:1011201","xrefs":{"Monarch":{"xref_id":"1011201"}}}


id: GO:0038143
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A heterodimeric complex between the tyrosine kinase receptor ERBB2 and a ligand-activated receptor ERBB3. ERBB2, which does not bind any known ligand, is activated through formation of a heterodimer with another ligand-activated ERBB family member such as ERBB3.","definition_xrefs":["PMID:16460914","PMID:8665853","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane signaling receptor complex","termid":"GO:0098802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005886","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"ERBB3:ERBB2 complex","synonyms":[{"name":"EGFR:ERBB2 heterodimer","type":"narrow"},{"name":"NRG1/2:ERBB3:ERBB2","type":"narrow"}],"termid":"GO:0038143"}


id: GO:0007509
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The migration of mesodermal cells during gastrulation to help establish the multilayered body plan of the organism.","definition_xrefs":["GOC:sat","GOC:isa_complete"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesodermal cell migration","termid":"GO:0008078"},{"relation_name":"is_a","term_name":"cell migration involved in gastrulation","termid":"GO:0042074"},{"relation_name":"is_a","term_name":"tissue migration","termid":"GO:0090130"},{"relation_name":"part_of","term_name":"mesoderm formation","termid":"GO:0001707"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesoderm migration involved in gastrulation","termid":"GO:0007509"}


id: PBO:0052353
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin family member 4C, pseudogene","termid":"PBO:0052353"}


id: MONDO:0011521
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inflammatory bowel disease that has material basis in variation in the chromosome region 1p36.","definition_xrefs":["DOID:0110882","PMID:19122664"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inflammatory bowel disease","termid":"MONDO:0005265"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0005046"],"is_obsolete":false,"name":"inflammatory bowel disease 7","secondary_identifiers":["MEDGEN:381452","OMIM:605225","UMLS:C1854573","MESH:C565353"],"synonyms":[{"name":"IBD7","type":"exact"},{"name":"inflammatory bowel disease 7","type":"exact"},{"name":"inflammatory bowel disease type 7","type":"exact"}],"termid":"MONDO:0011521","xrefs":{"Monarch":{"xref_id":"0011521"}}}


id: GO:1901765
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of phosphinothricin.","definition_xrefs":["GOC:TermGenie","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catabolic process","termid":"GO:0009056"},{"relation_name":"is_a","term_name":"phosphinothricin metabolic process","termid":"GO:1901764"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"phosphinothricin catabolic process","synonyms":[{"name":"phosphinothricin breakdown","type":"exact"},{"name":"phosphinothricin catabolism","type":"exact"},{"name":"phosphinothricin degradation","type":"exact"}],"termid":"GO:1901765"}


id: PBO:0081713
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 638","termid":"PBO:0081713"}


id: GO:0050829
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Reactions triggered in response to the presence of a Gram-negative bacterium that act to protect the cell or organism.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"defense response to bacterium","termid":"GO:0042742"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"defense response to Gram-negative bacterium","synonyms":[{"name":"Gram-negative antibacterial peptide activity","type":"related"},{"name":"defence response to Gram-negative bacteria","type":"exact"},{"name":"defence response to Gram-negative bacterium","type":"exact"},{"name":"defense response to Gram-negative bacteria","type":"exact"}],"termid":"GO:0050829"}


id: MONDO:0012681
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"febrile seizures, familial","termid":"MONDO:0000032"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"febrile seizures, familial, 7","secondary_identifiers":["UMLS:C1969087","DOID:0111311","OMIM:611515","MESH:C566929","MEDGEN:369406"],"synonyms":[{"name":"FEB7","type":"exact"},{"name":"febrile convulsions, familial, 7","type":"related"},{"name":"febrile seizures, familial, 7","type":"exact"}],"termid":"MONDO:0012681","xrefs":{"Monarch":{"xref_id":"0012681"}}}


id: GO:0048587
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of short-day photoperiodism, where the response associated with the photoperiodism is flowering. Flowering is defined by the switch from the vegetative to the reproductive phase.","definition_xrefs":["GOC:pj","ISBN:0582015952","ISBN:0709408862","GOC:jid","ISBN:0697037754"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of photoperiodism, flowering","termid":"GO:2000028"},{"relation_name":"regulates","term_name":"short-day photoperiodism, flowering","termid":"GO:0048575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of short-day photoperiodism, flowering","termid":"GO:0048587"}


id: PBO:0056114
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LYPLAL1 antisense RNA 1","termid":"PBO:0056114"}


id: GO:0019314
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving D-allose, the D-enantiomer of allo-hexose, an aldohexose similar to glucose.","definition_xrefs":["GOC:mah","GOC:jsg","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexose metabolic process","termid":"GO:0019318"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0005975"],"is_obsolete":false,"name":"D-allose metabolic process","synonyms":[{"name":"D-allose metabolism","type":"exact"}],"termid":"GO:0019314"}


id: PBO:0080672
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wolframin ER transmembrane glycoprotein","termid":"PBO:0080672"}


id: PBO:0083037
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Delta adaptin-like subunit of the clathrin associated protein complex; functions in transport of alkaline phosphatase to the vacuole via the alternate pathway; suppressor of loss of casein kinase 1 function; the clathrin associated protein complex is also known as AP-3","termid":"PBO:0083037"}


id: GO:0071389
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mineralocorticoid stimulus. Mineralocorticoids are hormonal C21 corticosteroids synthesized from cholesterol and characterized by their similarity to aldosterone. Mineralocorticoids act primarily on water and electrolyte balance.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to mineralocorticoid","termid":"GO:0051385"},{"relation_name":"is_a","term_name":"cellular response to corticosteroid stimulus","termid":"GO:0071384"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to mineralocorticoid stimulus","termid":"GO:0071389"}


id: GO:0050900
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The movement of a leukocyte within or between different tissues and organs of the body.","definition_xrefs":["ISBN:0781735149","PMID:14708592","PMID:14680625","PMID:8600538","PMID:7507411","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune system process","termid":"GO:0002376"},{"relation_name":"is_a","term_name":"cell migration","termid":"GO:0016477"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"leukocyte migration","secondary_identifiers":["Reactome:R-HSA-202733"],"synonyms":[{"name":"immune cell migration","type":"exact"},{"name":"immune cell trafficking","type":"exact"},{"name":"leucocyte migration","type":"exact"},{"name":"leucocyte trafficking","type":"exact"},{"name":"leukocyte trafficking","type":"exact"}],"termid":"GO:0050900"}


id: GO:0043908
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of misacylated Ser-tRNA(Ala) and Gly-tRNA(Ala).","definition_xrefs":["PMID:14663147","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic ester hydrolase activity","termid":"GO:0052689"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a tRNA","termid":"GO:0140101"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140101"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016788","GO:0140101","GO:0140098","GO:0016787","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"Ser(Gly)-tRNA(Ala) hydrolase activity","synonyms":[{"name":"Ser(Gly)-tRNAAla hydrolase activity","type":"exact"}],"termid":"GO:0043908"}


id: MONDO:0035689
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete syndrome of reduced sensitivity to thyroid hormone (obsolete MONDO:0035689)","secondary_identifiers":["Orphanet:596426"],"termid":"MONDO:0035689","xrefs":{"Monarch":{"xref_id":"0035689"}}}


id: PBO:0108566
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis protein Alb1","termid":"PBO:0108566"}


id: GO:0019433
data:
  {"annotated_genes":["SJAG_02089","SJAG_01036","SJAG_02543","SJAG_03604"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71913,92253,98824,117976],"is_not":false,"summary":null,"term":"GO:0019433"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a triglyceride, any triester of glycerol.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"triglyceride metabolic process","termid":"GO:0006641"},{"relation_name":"is_a","term_name":"acylglycerol catabolic process","termid":"GO:0046464"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01036":null,"SJAG_02089":null,"SJAG_02543":null,"SJAG_03604":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"triglyceride catabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-163560","MetaCyc:LIPAS-PWY"],"synonyms":[{"name":"triacylglycerol catabolic process","type":"exact"},{"name":"triacylglycerol catabolism","type":"exact"},{"name":"triglyceride breakdown","type":"exact"},{"name":"triglyceride catabolism","type":"exact"},{"name":"triglyceride degradation","type":"exact"}],"termid":"GO:0019433","terms_by_termid":{"GO:0019433":null}}


id: GO:1903465
data:
  {"annotated_genes":["SJAG_03160","SJAG_03695","SJAG_03048","SJAG_02074"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[102740],"is_not":false,"summary":null,"term":"GO:1903465"},{"annotations":[117671,112427,103689],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903468"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of mitotic cell cycle DNA replication.","definition_xrefs":["GO_REF:0000058","GOC:mtg_cell_cycle","GOC:TermGenie","PMID:1234"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of nuclear cell cycle DNA replication","termid":"GO:0010571"},{"relation_name":"is_a","term_name":"positive regulation of mitotic cell cycle","termid":"GO:0045931"},{"relation_name":"is_a","term_name":"regulation of mitotic cell cycle DNA replication","termid":"GO:1903463"},{"relation_name":"positively_regulates","term_name":"mitotic DNA replication","termid":"GO:1902969"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02074":null,"SJAG_03048":null,"SJAG_03160":null,"SJAG_03695":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006260"},{"rel_name":"positively_regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"positively_regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0006260"}],"interesting_parent_ids":["GO:0006260","GO:0007049","GO:0008150","GO:0006259"],"is_obsolete":false,"name":"positive regulation of mitotic cell cycle DNA replication","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of DNA replication during S phase involved in mitotic cell cycle","type":"related"},{"name":"activation of DNA replication involved in S phase involved in mitotic cell cycle","type":"narrow"},{"name":"activation of DNA replication involved in S-phase involved in mitotic cell cycle","type":"narrow"},{"name":"activation of mitotic cell cycle DNA replication","type":"narrow"},{"name":"activation of mitotic nuclear cell cycle DNA replication","type":"narrow"},{"name":"activation of nuclear cell cycle DNA replication involved in mitotic cell cycle","type":"related"},{"name":"positive regulation of DNA replication during S phase involved in mitotic cell cycle","type":"related"},{"name":"positive regulation of DNA replication involved in S phase involved in mitotic cell cycle","type":"exact"},{"name":"positive regulation of DNA replication involved in S-phase involved in mitotic cell cycle","type":"exact"},{"name":"positive regulation of mitotic nuclear cell cycle DNA replication","type":"exact"},{"name":"positive regulation of nuclear cell cycle DNA replication involved in mitotic cell cycle","type":"related"},{"name":"up regulation of DNA replication during S phase involved in mitotic cell cycle","type":"related"},{"name":"up regulation of DNA replication involved in S phase involved in mitotic cell cycle","type":"exact"},{"name":"up regulation of DNA replication involved in S-phase involved in mitotic cell cycle","type":"exact"},{"name":"up regulation of mitotic cell cycle DNA replication","type":"exact"},{"name":"up regulation of mitotic nuclear cell cycle DNA replication","type":"exact"},{"name":"up regulation of nuclear cell cycle DNA replication involved in mitotic cell cycle","type":"related"},{"name":"up-regulation of DNA replication during S phase involved in mitotic cell cycle","type":"related"},{"name":"up-regulation of DNA replication involved in S phase involved in mitotic cell cycle","type":"exact"},{"name":"up-regulation of DNA replication involved in S-phase involved in mitotic cell cycle","type":"exact"},{"name":"up-regulation of mitotic cell cycle DNA replication","type":"exact"},{"name":"up-regulation of mitotic nuclear cell cycle DNA replication","type":"exact"},{"name":"up-regulation of nuclear cell cycle DNA replication involved in mitotic cell cycle","type":"related"},{"name":"upregulation of DNA replication during S phase involved in mitotic cell cycle","type":"related"},{"name":"upregulation of DNA replication involved in S phase involved in mitotic cell cycle","type":"exact"},{"name":"upregulation of DNA replication involved in S-phase involved in mitotic cell cycle","type":"exact"},{"name":"upregulation of mitotic cell cycle DNA replication","type":"exact"},{"name":"upregulation of mitotic nuclear cell cycle DNA replication","type":"exact"},{"name":"upregulation of nuclear cell cycle DNA replication involved in mitotic cell cycle","type":"related"}],"termid":"GO:1903465","terms_by_termid":{"GO:1903465":null,"GO:1903468":null}}


id: PBO:0086898
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative transporter in the major facilitator superfamily; member of the 12-spanner drug:H(+) antiporter DHA1 family; mutations in membrane-spanning domains permit cation and histidinol uptake","termid":"PBO:0086898"}


id: PBO:0072511
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein SA pseudogene 40","termid":"PBO:0072511"}


id: GO:0052695
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of an organic chemical by the conjugation of glucuronic acid. The substances resulting from glucuronidation are known as glucuronosides (or glucuronides) and are often much more water-soluble than the non-glucuronic acid-containing precursor.","definition_xrefs":["GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete cellular glucuronidation (obsolete GO:0052695)","secondary_identifiers":["Reactome:R-HSA-156588"],"synonyms":[{"name":"cellular glucuronide biosynthesis","type":"exact"},{"name":"cellular glucuronide biosynthetic process","type":"exact"},{"name":"cellular glucuronoside biosynthesis","type":"exact"},{"name":"cellular glucuronoside biosynthetic process","type":"exact"}],"termid":"GO:0052695"}


id: GO:0071357
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a type I interferon stimulus. Type I interferons include the interferon-alpha, beta, delta, episilon, zeta, kappa, tau, and omega gene families.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to type I interferon","termid":"GO:0034340"},{"relation_name":"is_a","term_name":"cellular response to cytokine stimulus","termid":"GO:0071345"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to type I interferon","synonyms":[{"name":"cellular response to type I IFN","type":"exact"}],"termid":"GO:0071357"}


id: GO:0062047
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-pipecolic acid + NAD(P)H + O2 + H+ = N-hydroxypipecolic acid + NAD(P)+ + H2O.","definition_xrefs":["PMID:27758894","PMID:28330936"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen","termid":"GO:0016712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"pipecolic acid N-hydroxylase","termid":"GO:0062047"}


id: PBO:0011519
data:
  {"annotation_feature_type":"gene","cv_name":"species_dist","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved in prokaryotes","termid":"PBO:0011519"}


id: GO:1902596
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of DNA replication origin binding.","definition_xrefs":["GOC:TermGenie","GO_REF:0000059","PMID:11850415"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of DNA binding","termid":"GO:0043392"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of DNA replication origin binding","synonyms":[{"name":"down regulation of ARS binding","type":"narrow"},{"name":"down regulation of DNA replication origin binding","type":"exact"},{"name":"down-regulation of ARS binding","type":"narrow"},{"name":"down-regulation of DNA replication origin binding","type":"exact"},{"name":"downregulation of ARS binding","type":"narrow"},{"name":"downregulation of DNA replication origin binding","type":"exact"},{"name":"inhibition of ARS binding","type":"narrow"},{"name":"inhibition of DNA replication origin binding","type":"narrow"},{"name":"negative regulation of ARS binding","type":"narrow"}],"termid":"GO:1902596"}


id: PBO:0001035
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"human 4F5S homolog","termid":"PBO:0001035"}


id: GO:0015904
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of tetracycline from one side of a membrane to the other. Tetracycline is a broad spectrum antibiotic that blocks binding of aminoacyl tRNA to the ribosomes of both Gram-positive and Gram-negative organisms (and those of organelles).","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic anion transport","termid":"GO:0015711"},{"relation_name":"is_a","term_name":"organic hydroxy compound transport","termid":"GO:0015850"},{"relation_name":"is_a","term_name":"transmembrane transport","termid":"GO:0055085"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"tetracycline transmembrane transport","synonyms":[{"name":"tetracyclin transport","type":"broad"},{"name":"tetracycline transport","type":"broad"}],"termid":"GO:0015904"}


id: PBO:0083880
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ferric reductase; reduces a specific subset of siderophore-bound iron prior to uptake by transporters; expression induced by low iron levels","termid":"PBO:0083880"}


id: GO:0047095
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-hydroxycyclohexan-1-one + NADPH + O2 = 6-oxohexanoate + H2O + NADP+.","definition_xrefs":["RHEA:33283","EC:1.14.13.66"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"2-hydroxycyclohexanone 2-monooxygenase activity","secondary_identifiers":["MetaCyc:1.14.13.66-RXN","KEGG_REACTION:R03281"],"synonyms":[{"name":"2-hydroxycyclohexan-1-one,NADPH:oxygen 2-oxidoreductase (1,2-lactonizing)","type":"related"}],"termid":"GO:0047095"}


id: GO:0102342
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: (R)-3-hydroxycerotoyl-CoA + NADP = 3-oxohexacosanoyl-CoA + NADPH + H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 3-oxo-cerotoyl-CoA reductase activity (obsolete GO:0102342)","termid":"GO:0102342"}


id: PBO:0000615
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thiosulfate sulfurtransferase, URM1 activating enzyme (predicted)","termid":"PBO:0000615"}


id: SO:0002272
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Long interspersed element-1 (LINE-1) elements are found in the human genome, which contains ORF1 (open reading frame1, including CC, coiled coil; RRM, RNA recognition motif; CTD, carboxyl-terminal domain) and ORF2 (including EN, endonuclease; RT, reverse transcriptase; C, cysteine-rich domain). The L1-encoded proteins (ORF1p and ORF2p) can mobilize nonautonomous retrotransposons, other noncoding RNAs, and messenger RNAs.","definition_xrefs":["PMID:31709017"],"direct_ancestors":[{"relation_name":"is_a","term_name":"LINE_element","termid":"SO:0000194"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L1_LINE_retrotransposon","synonyms":[{"name":"L1 LINE retrotransposon","type":"exact"},{"name":"L1 element","type":"exact"},{"name":"LINE 1 element","type":"exact"},{"name":"LINE-1 element","type":"exact"}],"termid":"SO:0002272"}


id: FYPO:0006460
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which histone H2A phosphorylation occurs to a greater extent than normal in regions containing protein-coding genes during the first meiotic nuclear division. All histone H2A phosphorylation may be affected, or phosphorylation of specific sites on histone H2A may be increased.","definition_xrefs":["PMID:19965387","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein phosphorylation during meiosis I","termid":"FYPO:0003565"},{"relation_name":"is_a","term_name":"abnormal protein modification during meiotic cell cycle","termid":"FYPO:0006459"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0002274","FYPO:0001985","FYPO:0002494"],"is_obsolete":false,"name":"increased histone H2A phosphorylation at protein coding gene during meiosis I","synonyms":[{"name":"increased histone H2A phosphorylation at protein coding gene during first meiotic nuclear division","type":"exact"},{"name":"increased histone H2A phosphorylation at protein-coding gene during meiosis I","type":"exact"}],"termid":"FYPO:0006460"}


id: MONDO:0011547
data:
  {"annotated_genes":["SJAG_01242"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87289],"is_not":false,"summary":null,"term":"MONDO:0011547"}]},"cv_name":"mondo","definition":"Any early-onset non-syndromic cataract in which the cause of the disease is a mutation in the CHMP4B gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"early-onset non-syndromic cataract","termid":"MONDO:0011060"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01242":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"cataract 31 multiple types","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:C535343","UMLS:C1854311","DOID:0110265","OMIM:605387","MEDGEN:343089"],"synonyms":[{"name":"CHMP4B early-onset non-syndromic cataract","type":"exact"},{"name":"CPP3","type":"narrow"},{"name":"CTPP3","type":"narrow"},{"name":"CTRCT31","type":"exact"},{"name":"cataract 31, multiple types","type":"related"},{"name":"cataract, posterior polar, 3","type":"related"},{"name":"early-onset non-syndromic cataract caused by mutation in CHMP4B","type":"exact"},{"name":"posterior polar cataract 3","type":"narrow"}],"termid":"MONDO:0011547","terms_by_termid":{"MONDO:0011547":null},"xrefs":{"Monarch":{"xref_id":"0011547"}}}


id: PBO:0048043
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"follistatin","termid":"PBO:0048043"}


id: FYPO:0000683
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype in which the basal activity of an enzyme is increased relative to normal. Basal enzyme activity is the activity observed in the absence of a regulator. Abnormally elevated basal activity may or may not reach the levels observed in the normal activated state.","definition_xrefs":["PomBase:al","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic activity phenotype","termid":"FYPO:0000654"},{"relation_name":"output_of","term_name":"abnormal regulation of catalytic activity","termid":"FYPO:0004916"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000654","FYPO:0000652","FYPO:0005447"],"is_obsolete":false,"name":"constitutive catalytic activity","synonyms":[{"name":"constitutive catalytic activity during mitotic cell cycle","type":"related"},{"name":"constitutive catalytic activity during vegetative growth","type":"exact"},{"name":"constitutive enzymatic activity","type":"exact"},{"name":"constitutively active enzyme","type":"related"}],"termid":"FYPO:0000683"}


id: PBO:0046132
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 4H pseudogene 2","termid":"PBO:0046132"}


id: GO:1990772
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of substance P, a peptide hormone that is involved in neurotransmission, inflammation, and antimicrobial activity.","definition_xrefs":["PMID:11278900"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide hormone secretion","termid":"GO:0030072"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0023052","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"substance P secretion","termid":"GO:1990772"}


id: FYPO:0002027
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell forms an actomyosin contractile ring that is not perpendicular to the long axis of the cell.","definition_xrefs":["PomBase:mah","PMID:8834798"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mislocalized actomyosin contractile ring","termid":"FYPO:0001369"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0004803"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0001320","FYPO:0004803","FYPO:0000032","FYPO:0000002","FYPO:0005447","FYPO:0000138","FYPO:0001985"],"is_obsolete":false,"name":"angled actomyosin contractile ring","synonyms":[{"name":"actomyosin contractile ring not orthogonal to long axis of cell","type":"exact"},{"name":"actomyosin contractile ring not perpendicular to long axis of cell","type":"related"},{"name":"angled actomyosin contractile ring during mitotic cell cycle","type":"related"},{"name":"angled actomyosin contractile ring during vegetative growth","type":"exact"},{"name":"angled cytokinetic contractile ring","type":"exact"},{"name":"angled mitotic contractile ring","type":"exact"},{"name":"tilted actomyosin contractile ring","type":"exact"}],"termid":"FYPO:0002027"}


id: GO:0009665
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The partitioning of plastids between daughter cells at cell division.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plastid organization","termid":"GO:0009657"},{"relation_name":"is_a","term_name":"organelle inheritance","termid":"GO:0048308"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"plastid inheritance","termid":"GO:0009665"}


id: MONDO:1011865
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system disorder, non-human animal","termid":"MONDO:1011336"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"axonopathy, non-human animal","secondary_identifiers":["OMIA:001106"],"termid":"MONDO:1011865","xrefs":{"Monarch":{"xref_id":"1011865"}}}


id: PBO:0087147
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-dependent ATPase; involved in pre-rRNA processing at sites A0, A1, and A2, and in control of cell cycle progression; contains two upstream open reading frames (uORFs) in 5' untranslated region which regulate translation","termid":"PBO:0087147"}


id: GO:1904725
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Any TFIIB-class transcription factor binding that is involved in negative regulation of DNA-templated transcription.","definition_xrefs":["GOC:rb","PMID:12461786","GOC:TermGenie","GO_REF:0000061"],"gene_count":0,"genotype_count":0,"name":"obsolete TFIIB-class transcription factor binding involved in negative regulation of transcription (obsolete GO:1904725)","synonyms":[{"name":"TFIIB-class transcription factor binding involved in down regulation of gene-specific transcription","type":"related"},{"name":"TFIIB-class transcription factor binding involved in down regulation of transcription, DNA-dependent","type":"exact"},{"name":"TFIIB-class transcription factor binding involved in down-regulation of gene-specific transcription","type":"related"},{"name":"TFIIB-class transcription factor binding involved in down-regulation of transcription, DNA-dependent","type":"exact"},{"name":"TFIIB-class transcription factor binding involved in downregulation of gene-specific transcription","type":"related"},{"name":"TFIIB-class transcription factor binding involved in downregulation of transcription, DNA-dependent","type":"exact"},{"name":"TFIIB-class transcription factor binding involved in inhibition of gene-specific transcription","type":"related"},{"name":"TFIIB-class transcription factor binding involved in inhibition of transcription, DNA-dependent","type":"narrow"},{"name":"TFIIB-class transcription factor binding involved in negative regulation of cellular transcription, DNA-dependent","type":"exact"},{"name":"TFIIB-class transcription factor binding involved in negative regulation of gene-specific transcription","type":"related"},{"name":"TFIIB-class transcription factor binding involved in negative regulation of transcription, DNA-dependent","type":"exact"},{"name":"TFIIB-class transcription factor binding involved in negative regulation of transcription, DNA-templated","type":"exact"},{"name":"TFIIB-class transcription factor binding involved in transcription repressor activity","type":"related"}],"termid":"GO:1904725"}


id: MONDO:0044632
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"carotid artery disorder","termid":"MONDO:0005269"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"extracranial carotid artery aneurysm","secondary_identifiers":["Orphanet:494424","MEDGEN:1393749","UMLS:C4476554","GARD:22003"],"synonyms":[{"name":"ECAA","type":"exact"},{"name":"ECCA","type":"exact"},{"name":"Ecca","type":"exact"}],"termid":"MONDO:0044632","xrefs":{"Monarch":{"xref_id":"0044632"}}}


id: GO:0102734
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: castasterone + O2 + reduced [NADPH--hemoprotein reductase] = brassinolide + H+ + H2O + oxidized [NADPH--hemoprotein reductase]. Broad specificity for several brassinosteroids, including castasterone, teasterone, and typhasterol.","definition_xrefs":["EC:1.14.14.180"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen","termid":"GO:0016712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"brassinolide synthase activity","secondary_identifiers":["MetaCyc:RXN-720"],"termid":"GO:0102734"}


id: PBO:0002098
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor TFIIB","termid":"PBO:0002098"}


id: GO:0033572
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of transferrin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iron ion transport","termid":"GO:0006826"},{"relation_name":"is_a","term_name":"protein transport","termid":"GO:0015031"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"transferrin transport","secondary_identifiers":["Reactome:R-HSA-917977"],"synonyms":[{"name":"melanotransferrin transport","type":"exact"}],"termid":"GO:0033572"}


id: MONDO:0000097
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete thyroid dyshormonogenesis (obsolete MONDO:0000097)","termid":"MONDO:0000097","xrefs":{"Monarch":{"xref_id":"0000097"}}}


id: PBO:0035735
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_histone_H3-K9_trimethylation_at_centromere_during_vegetative_growth","termid":"PBO:0035735"}


id: MONDO:0020830
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"diaphragm disorder","termid":"MONDO:0005728"},{"relation_name":"is_a","term_name":"inflammatory disease","termid":"MONDO:0021166"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diaphragmitis","secondary_identifiers":["SCTID:73160007","UMLS:C0011985","icd11.foundation:1124735890","MEDGEN:507638"],"synonyms":[{"name":"diaphragmatitis","type":"exact"},{"name":"diaphragmitis","type":"exact"}],"termid":"MONDO:0020830","xrefs":{"Monarch":{"xref_id":"0020830"}}}


id: PBO:0080113
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitously transcribed tetratricopeptide repeat containing, Y-linked","termid":"PBO:0080113"}


id: GO:0106193
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the translocation of inorganic cations and their chelates linked to the hydrolysis of a diphosphate.","definition_xrefs":["GOC:hjd"],"gene_count":0,"genotype_count":0,"name":"obsolete translocase activity acting on inorganic cations and their chelates linked to the hydrolysis of a diphosphate (obsolete GO:0106193)","termid":"GO:0106193"}


id: _global:partial_evidence_for_feature
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"B is partial_evidence_for_feature A if the extent of B supports part_of but not all of A.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"evidence_for_feature","termid":"_global:evidence_for_feature"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"partial_evidence_for_feature","termid":"_global:partial_evidence_for_feature"}


id: PBO:0015652
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-occupancy","termid":"PBO:0015652"}


id: PBO:0076019
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine kinase 16","termid":"PBO:0076019"}


id: GO:1900855
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of fumitremorgin B biosynthetic process.","definition_xrefs":["GOC:TermGenie","GOC:di"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of fumitremorgin B biosynthetic process (obsolete GO:1900855)","synonyms":[{"name":"regulation of Lanosulin anabolism","type":"related"},{"name":"regulation of Lanosulin biosynthesis","type":"related"},{"name":"regulation of Lanosulin biosynthetic process","type":"related"},{"name":"regulation of Lanosulin formation","type":"related"},{"name":"regulation of Lanosulin synthesis","type":"related"},{"name":"regulation of fumitremorgin B anabolism","type":"exact"},{"name":"regulation of fumitremorgin B biosynthesis","type":"exact"},{"name":"regulation of fumitremorgin B formation","type":"exact"},{"name":"regulation of fumitremorgin B synthesis","type":"exact"}],"termid":"GO:1900855"}


id: GO:0071513
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that catalyzes decarboxylation of 4'-phosphopantothenoylcysteine to yield 4'-phosphopantetheine; this is the third step in the biosynthesis of Coenzyme A. The complex is homotrimeric in many eukaryotes, but is a heterotrimer in Saccharomyces.","definition_xrefs":["GOC:jh","PMID:19915539"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005737"],"is_obsolete":false,"name":"phosphopantothenoylcysteine decarboxylase complex","termid":"GO:0071513"}


id: GO:0052848
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3,5-bisdiphospho-1D-myo-inositol 2,3,4,6-tetrakisphosphate + H2O = 3-diphospho-1D-myo-inositol 1,2,4,5,6-pentakisphosphate + phosphate + 2 H+.","definition_xrefs":["PMID:10827188","RHEA:56312","PMID:11502751"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inositol bisdiphosphate tetrakisphosphate diphosphatase activity","termid":"GO:0052841"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"inositol-3,5-bisdiphosphate-2,3,4,6-tetrakisphosphate 5-diphosphatase activity","secondary_identifiers":["MetaCyc:RXN-10976"],"termid":"GO:0052848"}


id: GO:0071337
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the rate or extent of hair follicle cell proliferation.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell population proliferation","termid":"GO:0008285"},{"relation_name":"is_a","term_name":"regulation of hair follicle cell proliferation","termid":"GO:0071336"},{"relation_name":"negatively_regulates","term_name":"hair follicle cell proliferation","termid":"GO:0071335"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of hair follicle cell proliferation","synonyms":[{"name":"down regulation of hair follicle cell proliferation","type":"exact"},{"name":"down-regulation of hair follicle cell proliferation","type":"exact"},{"name":"downregulation of hair follicle cell proliferation","type":"exact"},{"name":"inhibition of hair follicle cell proliferation","type":"narrow"}],"termid":"GO:0071337"}


id: PBO:0042291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD3 delta subunit of T-cell receptor complex","termid":"PBO:0042291"}


id: GO:0071978
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Bacterial-type flagellum-dependent cell motility in which the action of numerous flagella results in the smooth movement of a group of cells along a solid surface. Swarming motility is observed in groups of bacteria.","definition_xrefs":["PMID:14527279","PMID:18461074","GOC:cilia"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bacterial-type flagellum-dependent cell motility","termid":"GO:0071973"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"bacterial-type flagellum-dependent swarming motility","synonyms":[{"name":"bacterial-type flagellar swarming motility","type":"related"},{"name":"bacterial-type flagellum-mediated cell swarming","type":"exact"}],"termid":"GO:0071978"}


id: PBO:0079377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin alpha pseudogene 12","termid":"PBO:0079377"}


id: FYPO:0006437
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle checkpoint phenotype in which the mitotic DNA damage checkpoint is normal (i.e. indistinguishable from wild type) when the cell is exposed to methyl methanesulfonate. The S phase DNA damage checkpoint slows progression through S phase in response to DNA damage.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal mitotic DNA damage checkpoint","termid":"FYPO:0001705"},{"relation_name":"is_a","term_name":"normal mitotic cell cycle regulation during cellular response to methyl methanesulfonate","termid":"FYPO:0005373"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000631","FYPO:0000002","FYPO:0000298","FYPO:0001320","FYPO:0001312"],"is_obsolete":false,"name":"normal mitotic DNA damage checkpoint during cellular response to methyl methanesulfonate","synonyms":[{"name":"normal mitotic DNA damage checkpoint activation during cellular response to methyl methanesulfonate","type":"exact"},{"name":"normal mitotic DNA damage checkpoint during cellular response to MMS","type":"exact"},{"name":"normal mitotic DNA damage checkpoint during cellular response to methyl methanesulfonate during mitotic cell cycle","type":"exact"},{"name":"normal mitotic DNA damage checkpoint during cellular response to methyl methanesulfonate during vegetative growth","type":"exact"}],"termid":"FYPO:0006437"}


id: PR:O59802
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A phosphatidylinositol N-acetylglucosaminyltransferase subunit C that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04589","PANTHER:PTHR12982:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol N-acetylglucosaminyltransferase GPI2 subunit (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC550.04c","secondary_identifiers":["UniProtKB:O59802"],"synonyms":[{"name":"Spom972h-PIGC","type":"exact"}],"termid":"PR:O59802"}


id: PATO:0001998
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a bearer by virtue of its visibility.","definition_xrefs":["PATOC:MAH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"qualitative","termid":"PATO:0000068"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conspicuousness","termid":"PATO:0001998"}


id: GO:0043459
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a single or short exposure to a lithium ion stimulus.","definition_xrefs":["PMID:10208444"],"gene_count":0,"genotype_count":0,"name":"obsolete response to short exposure to lithium ion (obsolete GO:0043459)","synonyms":[{"name":"response to short exposure to lithium ion","type":"exact"}],"termid":"GO:0043459"}


id: FYPO:0001658
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of valine into the cell is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal amino acid import during vegetative growth","termid":"FYPO:0001361"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000138","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"abnormal valine import","synonyms":[{"name":"abnormal L-valine import","type":"exact"},{"name":"abnormal L-valine import across plasma membrane","type":"exact"},{"name":"abnormal valine import during mitotic cell cycle","type":"related"},{"name":"abnormal valine import during vegetative growth","type":"exact"},{"name":"abnormal valine import into cell","type":"exact"},{"name":"abnormal valine uptake","type":"exact"}],"termid":"FYPO:0001658"}


id: PBO:0072946
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small Cajal body-specific RNA 26B","termid":"PBO:0072946"}


id: MONDO:0034661
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete syndromic biliary atresia (obsolete MONDO:0034661)","secondary_identifiers":["Orphanet:498350"],"termid":"MONDO:0034661","xrefs":{"Monarch":{"xref_id":"0034661"}}}


id: GO:0000964
data:
  {"annotated_genes":["SJAG_02526"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[79566],"is_not":false,"summary":null,"term":"GO:0000964"}]},"cv_name":"biological_process","definition":"Any process involved in forming the mature 5' end of an RNA molecule transcribed from a mitochondrial genome; occurs in the mitochondrion.","definition_xrefs":["GOC:krc","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial RNA processing","termid":"GO:0000963"},{"relation_name":"is_a","term_name":"RNA 5'-end processing","termid":"GO:0000966"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02526":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0140053"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0140053","GO:0010467"],"is_obsolete":false,"name":"mitochondrial RNA 5'-end processing","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"mitochondrial RNA 5' end processing","type":"related"}],"termid":"GO:0000964","terms_by_termid":{"GO:0000964":null}}


id: GO:0003081
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which renin-angiotensin modulates the force with which blood passes through the circulatory system.","definition_xrefs":["GOC:mtg_cardio"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of systemic arterial blood pressure by hormone","termid":"GO:0001990"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of systemic arterial blood pressure by renin-angiotensin","synonyms":[{"name":"blood pressure regulation by renin-angiotensin","type":"exact"}],"termid":"GO:0003081"}


id: PBO:0066813
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 112","termid":"PBO:0066813"}


id: GO:0010692
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of alkaline phosphatase activity, the catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an alkaline pH optimum.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of phosphatase activity","termid":"GO:0010921"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of alkaline phosphatase activity","termid":"GO:0010692"}


id: PATO:0000362
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000362 direction value (obsolete PATO:0000362)","termid":"PATO:0000362"}


id: GO:0016127
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid catabolic process","termid":"GO:0006706"},{"relation_name":"is_a","term_name":"sterol metabolic process","termid":"GO:0016125"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"sterol catabolic process","synonyms":[{"name":"sterol breakdown","type":"exact"},{"name":"sterol catabolism","type":"exact"},{"name":"sterol degradation","type":"exact"}],"termid":"GO:0016127"}


id: GO:1905506
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Any plastid stroma that is part of a gerontoplast.","definition_xrefs":["GO_REF:0000064","GOC:mag","GOC:TermGenie","PMID:11212360"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plastid stroma","termid":"GO:0009532"},{"relation_name":"part_of","term_name":"gerontoplast","termid":"GO:0034400"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"gerontoplast stroma","termid":"GO:1905506"}


id: MONDO:0019850
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete precocious puberty (obsolete MONDO:0019850)","termid":"MONDO:0019850","xrefs":{"Monarch":{"xref_id":"0019850"}}}


id: FYPO:0004854
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the actomyosin contractile ring is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to actomyosin contractile ring","termid":"FYPO:0002560"},{"relation_name":"is_a","term_name":"increased protein localization to cell division site","termid":"FYPO:0004655"},{"relation_name":"is_a","term_name":"increased protein localization to cell cortex during vegetative growth","termid":"FYPO:0009059"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0000138","FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0000032"],"is_obsolete":false,"name":"increased protein localization to actomyosin contractile ring","synonyms":[{"name":"increased protein localisation to actomyosin contractile ring","type":"exact"},{"name":"increased protein localization to actomyosin contractile ring during mitotic cell cycle","type":"related"},{"name":"increased protein localization to actomyosin contractile ring during vegetative growth","type":"exact"},{"name":"increased protein localization to actomyosin contractile ring involved in mitotic cytokinesis","type":"exact"},{"name":"increased protein localization to cytokinetic contractile ring","type":"exact"},{"name":"increased protein localization to mitotic contractile ring","type":"exact"},{"name":"increased protein recruitment to actomyosin contractile ring","type":"related"}],"termid":"FYPO:0004854"}


id: PBO:0085633
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in GPI anchor synthesis; multimembrane-spanning protein that localizes to the endoplasmic reticulum; highly conserved among eukaryotes; GPI stands for glycosylphosphatidylinositol","termid":"PBO:0085633"}


id: PBO:0067436
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 557, pseudogene","termid":"PBO:0067436"}


id: PBO:0057054
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 139","termid":"PBO:0057054"}


id: PBO:0003574
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Switch One Like","termid":"PBO:0003574"}


id: MONDO:0007066
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenosine triphosphatase deficiency, anemia due to","secondary_identifiers":["Orphanet:1044","OMIM:102800","GARD:548","SCTID:725057008","UMLS:C1863225","MEDGEN:350115","MESH:C566311"],"synonyms":[{"name":"adenosine triphosphatase deficiency anaemia","type":"related"},{"name":"adenosine triphosphatase deficiency anemia","type":"related"},{"name":"adenosine triphosphatase deficiency, anemia due to","type":"exact"},{"name":"anaemia due to adenosine triphosphatase deficiency","type":"related"},{"name":"anemia due to adenosine triphosphatase deficiency","type":"related"}],"termid":"MONDO:0007066","xrefs":{"Monarch":{"xref_id":"0007066"}}}


id: MONDO:0008106
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital nystagmus","termid":"MONDO:0005712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"nystagmus 2, congenital, autosomal dominant","secondary_identifiers":["DOID:0111792","OMIM:164100","MESH:C537854","UMLS:C1834079","MEDGEN:331657"],"synonyms":[{"name":"NYS2","type":"exact"},{"name":"NYSTAGMUS 2, congenital, autosomal dominant","type":"related"},{"name":"Nystagmus congenital, motor 2","type":"related"},{"name":"Nystagmus, congenital motor, 2","type":"related"}],"termid":"MONDO:0008106","xrefs":{"Monarch":{"xref_id":"0008106"}}}


id: GO:0008887
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-glycerate + ATP = 3-phospho-D-glycerate + ADP + 2 H+.","definition_xrefs":["EC:2.7.1.31","RHEA:23516"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016301","GO:0003824"],"is_obsolete":false,"name":"glycerate kinase activity","secondary_identifiers":["Reactome:R-HSA-6799495","KEGG_REACTION:R01514","MetaCyc:GLY3KIN-RXN"],"synonyms":[{"name":"ATP:(R)-glycerate 3-phosphotransferase activity","type":"related"},{"name":"ATP:D-glycerate 2-phosphotransferase activity","type":"related"},{"name":"D-glycerate 3-kinase activity","type":"related"},{"name":"D-glycerate kinase activity","type":"related"},{"name":"D-glyceric acid kinase activity","type":"related"},{"name":"GK","type":"related"},{"name":"glycerate kinase (phosphorylating)","type":"related"},{"name":"glycerate-3-kinase activity","type":"related"}],"termid":"GO:0008887"}


id: GO:1904598
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of wound healing connective tissue replacement, which may be replaced with fibrotic material, that occurs as part of an inflammatory response.","definition_xrefs":["GO_REF:0000058","PMID:18245812","GOC:krc","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of connective tissue replacement involved in inflammatory response wound healing","termid":"GO:1904596"},{"relation_name":"is_a","term_name":"positive regulation of connective tissue replacement","termid":"GO:1905205"},{"relation_name":"positively_regulates","term_name":"connective tissue replacement involved in inflammatory response wound healing","termid":"GO:0002248"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of connective tissue replacement involved in inflammatory response wound healing","synonyms":[{"name":"activation of connective tissue replacement during inflammatory response","type":"related"},{"name":"activation of connective tissue replacement involved in inflammatory response wound healing","type":"narrow"},{"name":"activation of fibrosis during inflammatory response","type":"narrow"},{"name":"positive regulation of connective tissue replacement during inflammatory response","type":"related"},{"name":"positive regulation of fibrosis during inflammatory response","type":"narrow"},{"name":"up regulation of connective tissue replacement during inflammatory response","type":"related"},{"name":"up regulation of connective tissue replacement involved in inflammatory response wound healing","type":"exact"},{"name":"up regulation of fibrosis during inflammatory response","type":"narrow"},{"name":"up-regulation of connective tissue replacement during inflammatory response","type":"related"},{"name":"up-regulation of connective tissue replacement involved in inflammatory response wound healing","type":"exact"},{"name":"up-regulation of fibrosis during inflammatory response","type":"narrow"},{"name":"upregulation of connective tissue replacement during inflammatory response","type":"related"},{"name":"upregulation of connective tissue replacement involved in inflammatory response wound healing","type":"exact"},{"name":"upregulation of fibrosis during inflammatory response","type":"narrow"}],"termid":"GO:1904598"}


id: MONDO:0006441
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete T-cell prolymphocytic leukemia (obsolete MONDO:0006441)","termid":"MONDO:0006441","xrefs":{"Monarch":{"xref_id":"0006441"}}}


id: PBO:0088914
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L37","termid":"PBO:0088914"}


id: GO:0033968
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (7R)-7-(4-carboxybutanamido)cephalosporanate + H2O = (7R)-7-aminocephalosporanate + glutarate.","definition_xrefs":["EC:3.5.1.93"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016810","GO:0003824","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"glutaryl-7-aminocephalosporanic-acid acylase activity","secondary_identifiers":["MetaCyc:3.5.1.93-RXN","RHEA:23508"],"synonyms":[{"name":"(7R)-7-(4-carboxybutanamido)cephalosporanate amidohydrolase activity","type":"related"},{"name":"7beta-(4-carboxybutanamido)cephalosporanic acid acylase activity","type":"related"},{"name":"CA","type":"related"},{"name":"GA","type":"related"},{"name":"GCA","type":"related"},{"name":"GL-7-ACA acylase activity","type":"related"},{"name":"cephalosporin C acylase activity","type":"related"},{"name":"cephalosporin acylase activity","type":"related"},{"name":"glutaryl-7-ACA acylase activity","type":"related"},{"name":"glutaryl-7-aminocephalosporanic acid acylase activity","type":"related"}],"termid":"GO:0033968"}


id: GO:0033806
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-threonine + fluoroacetaldehyde = acetaldehyde + 4-fluoro-L-threonine.","definition_xrefs":["RHEA:11748"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transketolase or transaldolase activity","termid":"GO:0016744"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016744"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0016744"],"is_obsolete":false,"name":"fluorothreonine transaldolase activity","secondary_identifiers":["EC:2.2.1.8"],"synonyms":[{"name":"fluoroacetaldehyde:L-threonine aldehydetransferase activity","type":"related"}],"termid":"GO:0033806"}


id: FYPO:0003564
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which generation of double-strand breaks at defined hotspots throughout the genome during meiosis I is abnormal.","definition_xrefs":["GO:0042138","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal meiotic recombination","termid":"FYPO:0000008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0000293"],"is_obsolete":false,"name":"abnormal meiotic DNA double-strand break formation","termid":"FYPO:0003564"}


id: PBO:0042977
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromodomain helicase DNA binding protein 3","termid":"PBO:0042977"}


id: GO:0045041
data:
  {"annotated_genes":["SJAG_00564","SJAG_01560","SJAG_02016","SJAG_01647","SJAG_00196"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[77548,77927],"is_not":false,"summary":null,"term":"GO:0045041"},{"annotations":[98847,97487,95416],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0160203"}]},"cv_name":"biological_process","definition":"The import of proteins into the space between the inner and outer mitochondrial membranes.","definition_xrefs":["ISBN:0716731363"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial transport","termid":"GO:0006839"},{"relation_name":"is_a","term_name":"protein transmembrane transport","termid":"GO:0071806"},{"relation_name":"is_a","term_name":"establishment of protein localization to mitochondrion","termid":"GO:0072655"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00196":null,"SJAG_00564":null,"SJAG_01560":null,"SJAG_01647":null,"SJAG_02016":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179","GO:0055085"],"is_obsolete":false,"name":"protein import into mitochondrial intermembrane space","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0045044","GO:0045043"],"synonyms":[{"name":"mitochondrial intermembrane space protein import","type":"exact"},{"name":"protein import into mitochondrial IMS","type":"exact"},{"name":"protein import into mitochondrial intermembrane space, direct","type":"narrow"},{"name":"protein import into mitochondrial intermembrane space, nonconservative","type":"narrow"},{"name":"protein transport into mitochondrial IMS","type":"exact"},{"name":"protein transport into mitochondrial intermembrane space","type":"exact"}],"termid":"GO:0045041","terms_by_termid":{"GO:0045041":null,"GO:0160203":null}}


id: FYPO:0006738
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which the proportion of cells in the population remains viable after entering stationary phase does not change in the presence of beta-hibitakanine. Normally, wild-type cell populations survive longer in the presence of beta-hibitakanine than in its absence.","definition_xrefs":["PomBase:mah","PMID:29900664"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell population phenotype","termid":"FYPO:0000003"},{"relation_name":"is_a","term_name":"abnormal phenotype","termid":"FYPO:0001985"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"stationary phase viability unaffected by beta-hibitakanine","synonyms":[{"name":"chronological lifespan unaffected by beta-hibitakanine","type":"related"},{"name":"loss of chronological lifespan extension by beta-hibitakanine","type":"related"},{"name":"loss of stationary phase viability extension in presence of beta-hibitakanine","type":"exact"}],"termid":"FYPO:0006738"}


id: GO:0052458
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of programmed cell death in the symbiont, where programmed cell death proceeds by a non-apoptotic pathway. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by organism of symbiont non-apoptotic programmed cell death (obsolete GO:0052458)","synonyms":[{"name":"modulation by organism of symbiont non-apoptotic programmed cell death","type":"exact"}],"termid":"GO:0052458"}


id: PBO:0077888
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TPRG1 antisense RNA 2","termid":"PBO:0077888"}


id: MONDO:0004646
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Death of tissue due to external pressure.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chronic ulcer of skin","termid":"MONDO:0004605"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"decubitus ulcer","secondary_identifiers":["UMLS:C4554531","MEDGEN:1789997","ICD9:707.0","ICD9:707.00","SCTID:399912005","DOID:8717","MESH:D003668"],"synonyms":[{"name":"bedsore","type":"related"},{"name":"decubitus (pressure) ulcer","type":"exact"},{"name":"decubitus ulcer","type":"exact"},{"name":"decubitus ulcer any site","type":"exact"},{"name":"decubitus ulcer, elbow","type":"exact"},{"name":"decubitus ulcer, lower back","type":"exact"},{"name":"decubitus ulcer, other site","type":"exact"},{"name":"decubitus ulcer, upper back","type":"exact"},{"name":"pressure sores","type":"exact"},{"name":"pressure ulcer","type":"exact"}],"termid":"MONDO:0004646","xrefs":{"Monarch":{"xref_id":"0004646"}}}


id: GO:0034563
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2,3-bis(4-hydroxyphenyl)-1,2-propanediol + O2 = 4-hydroxyphenacyl alcohol + 4-hydroxybenzoate + 2 H+ + 2 e-.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 2,3-bis(4-hydroxyphenyl)-1,2-propanediol dioxygenase activity (obsolete GO:0034563)","termid":"GO:0034563"}


id: GO:0047955
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: A + glycerol = AH(2) + glycerone.","definition_xrefs":["EC:1.1.99.22","RHEA:17493"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on CH-OH group of donors","termid":"GO:0016614"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"glycerol dehydrogenase (acceptor) activity","secondary_identifiers":["KEGG_REACTION:R01045","MetaCyc:GLYCEROL-DEHYDROGENASE-ACCEPTOR-RXN"],"synonyms":[{"name":"glycerol:(acceptor) 1-oxidoreductase activity","type":"related"},{"name":"glycerol:acceptor 1-oxidoreductase activity","type":"related"}],"termid":"GO:0047955"}


id: MONDO:0003836
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare, hormonally functioning or non-functioning pituitary gland adenocarcinoma that produces thyrotropin.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"TSH producing pituitary tumor","termid":"MONDO:0003837"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"malignant thyroid stimulating hormone producing neoplasm of pituitary gland","secondary_identifiers":["MEDGEN:277341","NCIT:C5965","UMLS:C1334627","DOID:6274"],"synonyms":[{"name":"TSH producing pituitary gland carcinoma","type":"exact"},{"name":"TSH-producing pituitary gland carcinoma","type":"exact"},{"name":"malignant TSH producing neoplasm of pituitary","type":"exact"},{"name":"malignant TSH producing neoplasm of pituitary gland","type":"exact"},{"name":"malignant TSH producing neoplasm of the pituitary","type":"exact"},{"name":"malignant TSH producing neoplasm of the pituitary gland","type":"exact"},{"name":"malignant TSH producing pituitary gland neoplasm","type":"exact"},{"name":"malignant TSH producing pituitary gland tumor","type":"exact"},{"name":"malignant TSH producing pituitary gland tumour","type":"exact"},{"name":"malignant TSH producing pituitary neoplasm","type":"exact"},{"name":"malignant TSH producing pituitary tumor","type":"exact"},{"name":"malignant TSH producing pituitary tumour","type":"exact"},{"name":"malignant TSH producing tumor of pituitary","type":"exact"},{"name":"malignant TSH producing tumor of pituitary gland","type":"exact"},{"name":"malignant TSH producing tumor of the pituitary","type":"exact"},{"name":"malignant TSH producing tumor of the pituitary gland","type":"exact"},{"name":"malignant TSH producing tumour of pituitary","type":"exact"},{"name":"malignant TSH producing tumour of pituitary gland","type":"exact"},{"name":"malignant TSH producing tumour of the pituitary","type":"exact"},{"name":"malignant TSH producing tumour of the pituitary gland","type":"exact"},{"name":"malignant TSH secreting neoplasm of pituitary","type":"exact"},{"name":"malignant TSH secreting neoplasm of pituitary gland","type":"exact"},{"name":"malignant TSH secreting neoplasm of the pituitary","type":"exact"},{"name":"malignant TSH secreting neoplasm of the pituitary gland","type":"exact"},{"name":"malignant TSH secreting pituitary gland neoplasm","type":"exact"},{"name":"malignant TSH secreting pituitary gland tumor","type":"exact"},{"name":"malignant TSH secreting pituitary gland tumour","type":"exact"},{"name":"malignant TSH secreting pituitary neoplasm","type":"exact"},{"name":"malignant TSH secreting pituitary tumor","type":"exact"},{"name":"malignant TSH secreting pituitary tumour","type":"exact"},{"name":"malignant TSH secreting tumor of pituitary","type":"exact"},{"name":"malignant TSH secreting tumor of pituitary gland","type":"exact"},{"name":"malignant TSH secreting tumor of the pituitary","type":"exact"},{"name":"malignant TSH secreting tumor of the pituitary gland","type":"exact"},{"name":"malignant TSH secreting tumour of pituitary","type":"exact"},{"name":"malignant TSH secreting tumour of pituitary gland","type":"exact"},{"name":"malignant TSH secreting tumour of the pituitary","type":"exact"},{"name":"malignant TSH secreting tumour of the pituitary gland","type":"exact"},{"name":"malignant pituitary gland thyrotropinoma","type":"exact"},{"name":"malignant pituitary thyrotropinoma","type":"exact"},{"name":"malignant thyroid stimulating hormone producing neoplasm of pituitary","type":"exact"},{"name":"malignant thyroid stimulating hormone producing neoplasm of pituitary gland","type":"exact"},{"name":"malignant thyroid stimulating hormone producing neoplasm of the pituitary","type":"exact"},{"name":"malignant thyroid stimulating hormone producing neoplasm of the pituitary gland","type":"exact"},{"name":"malignant thyroid stimulating hormone producing pituitary gland neoplasm","type":"exact"},{"name":"malignant thyroid stimulating hormone producing pituitary gland tumor","type":"exact"},{"name":"malignant thyroid stimulating hormone producing pituitary gland tumour","type":"exact"},{"name":"malignant thyroid stimulating hormone producing pituitary neoplasm","type":"exact"},{"name":"malignant thyroid stimulating hormone producing pituitary tumor","type":"exact"},{"name":"malignant thyroid stimulating hormone producing pituitary tumour","type":"exact"},{"name":"malignant thyroid stimulating hormone producing tumor","type":"exact"},{"name":"malignant thyroid stimulating hormone producing tumor of pituitary","type":"exact"},{"name":"malignant thyroid stimulating hormone producing tumor of pituitary gland","type":"exact"},{"name":"malignant thyroid stimulating hormone producing tumor of the pituitary","type":"exact"},{"name":"malignant thyroid stimulating hormone producing tumor of the pituitary gland","type":"exact"},{"name":"malignant thyroid stimulating hormone producing tumour","type":"exact"},{"name":"malignant thyroid stimulating hormone producing tumour of pituitary","type":"exact"},{"name":"malignant thyroid stimulating hormone producing tumour of pituitary gland","type":"exact"},{"name":"malignant thyroid stimulating hormone producing tumour of the pituitary","type":"exact"},{"name":"malignant thyroid stimulating hormone producing tumour of the pituitary gland","type":"exact"},{"name":"malignant thyroid stimulating hormone secreting neoplasm of pituitary","type":"exact"},{"name":"malignant thyroid stimulating hormone secreting neoplasm of pituitary gland","type":"exact"},{"name":"malignant thyroid stimulating hormone secreting neoplasm of the pituitary","type":"exact"},{"name":"malignant thyroid stimulating hormone secreting neoplasm of the pituitary gland","type":"exact"},{"name":"malignant thyroid stimulating hormone secreting pituitary gland neoplasm","type":"exact"},{"name":"malignant thyroid stimulating hormone secreting pituitary gland tumor","type":"exact"},{"name":"malignant thyroid stimulating hormone secreting pituitary gland tumour","type":"exact"},{"name":"malignant thyroid stimulating hormone secreting pituitary neoplasm","type":"exact"},{"name":"malignant thyroid stimulating hormone secreting pituitary tumor","type":"exact"},{"name":"malignant thyroid stimulating hormone secreting pituitary tumour","type":"exact"},{"name":"malignant thyroid stimulating hormone secreting tumor of pituitary","type":"exact"},{"name":"malignant thyroid stimulating hormone secreting tumor of pituitary gland","type":"exact"},{"name":"malignant thyroid stimulating hormone secreting tumor of the pituitary","type":"exact"},{"name":"malignant thyroid stimulating hormone secreting tumor of the pituitary gland","type":"exact"},{"name":"malignant thyroid stimulating hormone secreting tumour of pituitary","type":"exact"},{"name":"malignant thyroid stimulating hormone secreting tumour of pituitary gland","type":"exact"},{"name":"malignant thyroid stimulating hormone secreting tumour of the pituitary","type":"exact"},{"name":"malignant thyroid stimulating hormone secreting tumour of the pituitary gland","type":"exact"},{"name":"malignant thyrotropinoma","type":"exact"},{"name":"malignant thyrotropinoma of pituitary","type":"exact"},{"name":"malignant thyrotropinoma of pituitary gland","type":"exact"},{"name":"malignant thyrotropinoma of the pituitary","type":"exact"},{"name":"malignant thyrotropinoma of the pituitary gland","type":"exact"},{"name":"thyrotropin producing pituitary gland carcinoma","type":"exact"}],"termid":"MONDO:0003836","xrefs":{"Monarch":{"xref_id":"0003836"}}}


id: GO:0016062
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which a rhodopsin-mediated signaling pathway is adjusted to modulate the sensitivity and response of a visual system to light stimuli (that might vary over more than 6 magnitudes in intensity) without response saturation.","definition_xrefs":["PMID:1962207"],"gene_count":0,"genotype_count":0,"name":"obsolete adaptation of rhodopsin mediated signaling (obsolete GO:0016062)","synonyms":[{"name":"adaptation of rhodopsin mediated signalling","type":"exact"}],"termid":"GO:0016062"}


id: PBO:0045404
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DPPA3 pseudogene 6","termid":"PBO:0045404"}


id: PR:O13791
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- slt1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O13791"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein slt1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17G6.13","synonyms":[{"name":"Spom972h-slt1","type":"exact"}],"termid":"PR:O13791"}


id: MOD:00113
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to S-geranylgeranyl-L-cysteine.","definition_xrefs":["PubMed:1483450","RESID:AA0104","PubMed:15609361","OMSSA:49","DeltaMass:0","Unimod:48#C"],"direct_ancestors":[{"relation_name":"is_a","term_name":"geranylgeranylated residue","termid":"MOD:00441"},{"relation_name":"is_a","term_name":"isoprenylated cysteine","termid":"MOD:01110"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"},{"rel_name":"is_a","termid":"MOD:01155"}],"interesting_parent_ids":["MOD:00905","MOD:01155"],"is_obsolete":false,"name":"S-geranylgeranyl-L-cysteine","synonyms":[{"name":"(2R)-2-amino-3-([(2E,6E,10Z)-12-hydroxy-3,7,11-trimethyldodeca-2,6,10-trien-1-yl]sulfanyl)propanoic acid","type":"exact"},{"name":"2-amino-3-(3,7,11,15-tetramethyl-2,6,10,14-hexadecatetraenylthio)propanoic acid","type":"exact"},{"name":"Geranyl-geranyl","type":"related"},{"name":"GeranylGeranyl","type":"related"},{"name":"LIPID S-geranylgeranyl cysteine","type":"exact"},{"name":"S-geranylgeranyl","type":"exact"},{"name":"S-geranylgeranyl-L-cysteine","type":"exact"},{"name":"SGergerCys","type":"exact"},{"name":"geranylgeranylc","type":"exact"}],"termid":"MOD:00113"}


id: GO:0045175
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which a protein is transported to, or maintained in, basal regions of the cell.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization","termid":"GO:0008104"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"basal protein localization","synonyms":[{"name":"basal protein localisation","type":"exact"},{"name":"establishment and maintenance of basal protein localization","type":"exact"},{"name":"establishment and maintenance of protein localization in basal part of cell","type":"exact"}],"termid":"GO:0045175"}


id: FYPO:0007074
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing mycophenolic acid.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0000003","FYPO:0002057","FYPO:0000257","FYPO:0002060","FYPO:0002058"],"is_obsolete":false,"name":"normal growth on mycophenolic acid","synonyms":[{"name":"normal cell population growth in presence of mycophenolic acid","type":"exact"},{"name":"normal cell population growth on MPA","type":"exact"},{"name":"normal cell population growth on mycophenolic acid","type":"exact"},{"name":"normal vegetative cell population growth on mycophenolic acid","type":"exact"}],"termid":"FYPO:0007074"}


id: PBO:0079411
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin beta 8 class VIII pseudogene 5","termid":"PBO:0079411"}


id: PBO:0066704
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 1","termid":"PBO:0066704"}


id: PBO:0042242
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-C motif chemokine receptor 5","termid":"PBO:0042242"}


id: PBO:0056321
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAP3K5 antisense RNA 1","termid":"PBO:0056321"}


id: PBO:0041334
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 3 common eliminated region 1","termid":"PBO:0041334"}


id: PBO:0027607
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_duration_of_mitotic_anaphase","termid":"PBO:0027607"}


id: PBO:0000504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy associated protein Aut12 (predicted)","termid":"PBO:0000504"}


id: GO:0061261
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A transition where a mesenchymal cell establishes apical/basolateral polarity, forms intercellular adhesive junctions, synthesizes basement membrane components and becomes an epithelial cell that will contribute to the shaping of the mesonephros.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell differentiation involved in kidney development","termid":"GO:0035850"},{"relation_name":"is_a","term_name":"mesenchymal to epithelial transition","termid":"GO:0060231"},{"relation_name":"is_a","term_name":"cell differentiation involved in mesonephros development","termid":"GO:0061208"},{"relation_name":"part_of","term_name":"mesonephros morphogenesis","termid":"GO:0061206"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesenchymal to epithelial transition involved in mesonephros morphogenesis","synonyms":[{"name":"mesonephric mesenchyme to epithelial transition","type":"related"}],"termid":"GO:0061261"}


id: PBO:0043484
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cannabinoid receptor 2","termid":"PBO:0043484"}


id: MONDO:0012874
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"disseminated superficial actinic porokeratosis","termid":"MONDO:0019212"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"porokeratosis 6, disseminated superficial actinic type","secondary_identifiers":["UMLS:C2676508","GARD:15552","OMIM:612353","MEDGEN:394063","MESH:C567339"],"synonyms":[{"name":"POROK6","type":"exact"},{"name":"porokeratosis 6, disseminated superficial","type":"related"},{"name":"porokeratosis 6, disseminated superficial actinic type","type":"exact"},{"name":"porokeratosis 6, multiple types","type":"related"},{"name":"porokeratosis, disseminated superficial actinic, 4","type":"related"}],"termid":"MONDO:0012874","xrefs":{"Monarch":{"xref_id":"0012874"}}}


id: MONDO:0001987
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"neurodegenerative disease","termid":"MONDO:0005559"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"senile degeneration of brain","secondary_identifiers":["DOID:14524","MEDGEN:509626","SCTID:45864009","ICD9:331.2","UMLS:C0154669"],"synonyms":[{"name":"Senile brain degen.","type":"exact"}],"termid":"MONDO:0001987","xrefs":{"Monarch":{"xref_id":"0001987"}}}


id: GO:0017163
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Any transcription regulator activity that prevents or downregulates basal transcription. Basal transcription results from transcription that is controlled by the minimal complement of proteins necessary to reconstitute transcription from a minimal promoter.","definition_xrefs":["GOC:tb","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete basal transcription repressor activity (obsolete GO:0017163)","synonyms":[{"name":"basal transcription repressor activity","type":"exact"}],"termid":"GO:0017163"}


id: PBO:0065434
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome 26S subunit, ATPase 1 pseudogene 7","termid":"PBO:0065434"}


id: MONDO:0957896
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A steatotic liver disease characterized by at least one of the five cardiometabolic risk factors for MASLD and alcohol consumption of 140-350g/week (females) or 210-420g/week (males). This disease is distinguished from MASLD by increased alcohol consumption and from ALD by the evidence of one or more of the MASLD cardiometabolic risk factors.","definition_xrefs":["DOID:0070508","PMID:34722187"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty liver disease","termid":"MONDO:0004790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0002515","MONDO:0004335"],"is_obsolete":false,"name":"metabolic dysfunction and alcohol associated liver disease","termid":"MONDO:0957896","xrefs":{"Monarch":{"xref_id":"0957896"}}}


id: MONDO:0004615
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A cancer involving a gingiva of upper jaw.","definition_xrefs":["MONDO:patterns/cancer"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gingival cancer","termid":"MONDO:0005507"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992"],"is_obsolete":false,"name":"upper gum cancer","secondary_identifiers":["DOID:8601","ICD9:143.0","MEDGEN:509265","SCTID:363383000","UMLS:C0153365"],"synonyms":[{"name":"cancer of gingiva of upper jaw","type":"exact"},{"name":"gingiva of upper jaw cancer","type":"exact"},{"name":"malignant gingiva of upper jaw neoplasm","type":"exact"},{"name":"malignant neoplasm of gingiva of upper jaw","type":"exact"},{"name":"malignant tumor of upper gingiva","type":"exact"},{"name":"malignant tumor of upper gum","type":"exact"},{"name":"malignant tumour of upper gingiva","type":"exact"},{"name":"malignant tumour of upper gum","type":"exact"}],"termid":"MONDO:0004615","xrefs":{"Monarch":{"xref_id":"0004615"}}}


id: PBO:0026698
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cell_population_growth_on_arabinose_carbon_source","termid":"PBO:0026698"}


id: FYPO:0006508
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the size, shape, or structure of the telomere is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal subcellular component","termid":"FYPO:0000287"},{"relation_name":"output_of","term_name":"abnormal telomere maintenance","termid":"FYPO:0007415"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000641"},{"rel_name":"output_of","termid":"FYPO:0000293"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000293","FYPO:0001985","FYPO:0000002","FYPO:0000641"],"is_obsolete":false,"name":"abnormal telomere morphology","termid":"FYPO:0006508"}


id: PBO:0046570
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group K member 12","termid":"PBO:0046570"}


id: PBO:0081943
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc ribbon domain containing 2","termid":"PBO:0081943"}


id: PBO:0040544
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"beta-1,3-glucuronyltransferase 2","termid":"PBO:0040544"}


id: PBO:0031728
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_mitotic_recombination","termid":"PBO:0031728"}


id: FYPO:0005494
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A transport phenotype observed in the vegetative growth phase of the life cycle in which the transport of proteins along microtubules is decreased. Transport of all proteins or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein transport during vegetative growth","termid":"FYPO:0000541"},{"relation_name":"is_a","term_name":"decreased transport along microtubule during vegetative growth","termid":"FYPO:0005526"},{"relation_name":"is_a","term_name":"abnormal protein transport along microtubule during vegetative growth","termid":"FYPO:0005830"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000138","FYPO:0005447","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"decreased protein transport along microtubule during vegetative growth","synonyms":[{"name":"decreased protein movement along microtubule during vegetative growth","type":"exact"},{"name":"decreased protein transport along microtubule during mitotic cell cycle","type":"related"},{"name":"reduced protein transport along microtubule during vegetative growth","type":"exact"}],"termid":"FYPO:0005494"}


id: PBO:0039064
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AGK pseudogene 1","termid":"PBO:0039064"}


id: GO:0100050
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any transcription from RNA polymerase II promoter process that negatively regulates mating type switching.","definition_xrefs":["GOC:obol","GOC:cjm"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of mating type switching by transcription from RNA polymerase II promoter (obsolete GO:0100050)","termid":"GO:0100050"}


id: PR:Q9US07
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An actin-related protein 8 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11937:SF13","OMA:SCHPO00696","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin-related protein 8 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC664.02c","secondary_identifiers":["UniProtKB:Q9US07"],"synonyms":[{"name":"Spom972h-ACTR8","type":"exact"}],"termid":"PR:Q9US07"}


id: PBO:0038840
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADAMTS9 antisense RNA 1","termid":"PBO:0038840"}


id: PBO:0090991
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Taz1-like protein","termid":"PBO:0090991"}


id: MONDO:0011839
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any cone-rod dystrophy in which the cause of the disease is a mutation in the RLBP1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cone-rod dystrophy","termid":"MONDO:0015993"},{"relation_name":"is_a","term_name":"RLBP1-related retinopathy","termid":"MONDO:0100444"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"Newfoundland cone-rod dystrophy","secondary_identifiers":["MEDGEN:334840","DOID:0111015","UMLS:C1843815","OMIM:607476","MESH:C564391"],"synonyms":[{"name":"NFRCD","type":"exact"},{"name":"Newfoundland ROD-cone dystrophy","type":"related"},{"name":"RLBP1 cone-rod dystrophy","type":"exact"},{"name":"cone-rod dystrophy caused by mutation in RLBP1","type":"exact"}],"termid":"MONDO:0011839","xrefs":{"Monarch":{"xref_id":"0011839"}}}


id: GO:1903805
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of L-valine from outside of a cell, across the plasma membrane and into the cytosol.","definition_xrefs":["GO_REF:0000075","GOC:TermGenie","PMID:23895341"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid import across plasma membrane","termid":"GO:0089718"},{"relation_name":"is_a","term_name":"L-valine transmembrane transport","termid":"GO:1903785"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"L-valine import across plasma membrane","secondary_identifiers":["GO:0090468"],"synonyms":[{"name":"L-valine import into cell","type":"exact"},{"name":"valine import","type":"narrow"}],"termid":"GO:1903805"}


id: MONDO:0004176
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An osteosarcoma arising from the soft tissue, and occurring during childhood.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extraosseous osteosarcoma","termid":"MONDO:0002621"},{"relation_name":"is_a","term_name":"pediatric osteosarcoma","termid":"MONDO:0002623"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"childhood extraosseous osteosarcoma","secondary_identifiers":["UMLS:C1332968","DOID:7297","NCIT:C27376","MEDGEN:232060"],"synonyms":[{"name":"childhood extraosseous osteosarcoma","type":"exact"},{"name":"childhood extraskeletal osteosarcoma","type":"exact"},{"name":"extraosseous osteosarcoma of childhood","type":"exact"},{"name":"paediatric extraosseous osteosarcoma","type":"exact"},{"name":"paediatric extraskeletal osteosarcoma","type":"exact"},{"name":"pediatric extraosseous osteosarcoma","type":"exact"},{"name":"pediatric extraskeletal osteosarcoma","type":"exact"}],"termid":"MONDO:0004176","xrefs":{"Monarch":{"xref_id":"0004176"}}}


id: FYECO:0000323
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Cells were cold shocked followed by recovery at a temperature range higher than normal for standard pombe growth.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping sequential growth conditions","termid":"FYECO:0000094"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cold shock and recovery at high temperature","termid":"FYECO:0000323"}


id: PBO:0074372
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"single-pass membrane protein with aspartate rich tail 1","termid":"PBO:0074372"}


id: PBO:0084856
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial ribosomal protein of the large subunit; overproduction suppresses mutations in the COX2 leader peptide-encoding region","termid":"PBO:0084856"}


id: PR:Q02592
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ATP-binding cassette sub-family B member 6, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO04872"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heavy metal tolerance protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC737.09c","secondary_identifiers":["UniProtKB:Q02592"],"synonyms":[{"name":"Spom972h-ABCB6","type":"exact"}],"termid":"PR:Q02592"}


id: GO:0150003
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of spontaneous synaptic transmission.","definition_xrefs":["PMID:15457210","GOC:aruk","GOC:bc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation of chemical synaptic transmission","termid":"GO:0050804"},{"relation_name":"regulates","term_name":"spontaneous synaptic transmission","termid":"GO:0098814"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of spontaneous synaptic transmission","termid":"GO:0150003"}


id: MONDO:0018139
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete scleredema (obsolete MONDO:0018139)","termid":"MONDO:0018139","xrefs":{"Monarch":{"xref_id":"0018139"}}}


id: PBO:0049899
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HERPUD2 antisense RNA 1","termid":"PBO:0049899"}


id: GO:0009380
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Any of the protein complexes formed by the UvrABC excinuclease system, which carries out nucleotide excision repair. Three different complexes are formed by the 3 proteins as they proceed through the excision repair process. First a complex consisting of two A subunits and two B subunits bind DNA and unwind it around the damaged site. Then, the A subunits disassociate leaving behind a stable complex between B subunits and DNA. Now, subunit C binds to this B+DNA complex and causes subunit B to nick the DNA on one side of the complex while subunit C nicks the DNA on the other side of the complex. DNA polymerase I and DNA ligase can then repair the resulting gap.","definition_xrefs":["GOC:mah","PMID:12145219","GOC:mlg","PMID:15192705"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endodeoxyribonuclease complex","termid":"GO:1905347"},{"relation_name":"is_a","term_name":"DNA repair complex","termid":"GO:1990391"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"excinuclease repair complex","synonyms":[{"name":"UvrABC excinuclease complex","type":"exact"},{"name":"excinuclease ABC complex","type":"exact"}],"termid":"GO:0009380"}


id: GO:0018963
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving phthalate, the anion of phthalic acid. Phthalic acid diesters are used industrially in the production of a variety of household and consumer goods including plastic polymers, lubricating oils, and carriers for perfumes in cosmetics, while phthalic acid itself is used industrially as a plasticizer. Terephthalate is used in the synthesis of polyethylene terephthalate (polyethene terephthlate, abbreviated PET or PETE), a plastic polymer with many commercial uses.","definition_xrefs":["UM-BBD_pathwayID:pth"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic acid metabolic process","termid":"GO:0019752"},{"relation_name":"is_a","term_name":"benzene-containing compound metabolic process","termid":"GO:0042537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"phthalate metabolic process","synonyms":[{"name":"phthalate metabolism","type":"exact"},{"name":"phthalic acid metabolic process","type":"exact"},{"name":"phthalic acid metabolism","type":"exact"}],"termid":"GO:0018963"}


id: MOD:01180
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts a glycine residue to 2-hydroxyglycine.","definition_xrefs":["PubMed:17823333","RESID:AA0434","PubMed:16178056","ChEBI:38048","PubMed:17431180"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monohydroxylated residue","termid":"MOD:00425"},{"relation_name":"is_a","term_name":"modified glycine residue","termid":"MOD:00908"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2-hydroxyglycine observational artifact","synonyms":[{"name":"2-hydroxyglycine","type":"exact"},{"name":"2HyGly","type":"exact"},{"name":"alpha-hydroxyglycine","type":"exact"},{"name":"amino(hydroxy)acetic acid","type":"exact"},{"name":"aminohydroxyacetic acid","type":"exact"}],"termid":"MOD:01180"}


id: MONDO:0013340
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inherited susceptibility or predisposition to developing young-onset Parkinson disease in which the cause of the disease is a mutation in the UCHL1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene","MONDO:patterns/inherited_susceptibility"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"young-onset Parkinson disease","termid":"MONDO:0017279"},{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Parkinson disease 5, autosomal dominant, susceptibility to","secondary_identifiers":["MEDGEN:462249","OMIM:613643","UMLS:C3150899"],"synonyms":[{"name":"PARK5","type":"related"},{"name":"Parkinson disease 5, autosomal dominant, susceptibility to","type":"exact"},{"name":"Parkinson disease 5, susceptibility to","type":"exact"},{"name":"UCHL1 young-onset Parkinson disease","type":"exact"},{"name":"susceptibility to autosomal dominant Parkinson disease 5","type":"related"},{"name":"young-onset Parkinson disease caused by mutation in UCHL1","type":"exact"}],"termid":"MONDO:0013340","xrefs":{"Monarch":{"xref_id":"0013340"}}}


id: GO:0018977
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving 1,1,1-trichloro-2,2-bis-(4-chlorophenyl)ethane (DDT), a chlorinated broad spectrum contact insecticide.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"insecticide metabolic process","termid":"GO:0017143"},{"relation_name":"is_a","term_name":"chlorinated hydrocarbon metabolic process","termid":"GO:0042196"},{"relation_name":"is_a","term_name":"benzene-containing compound metabolic process","termid":"GO:0042537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"1,1,1-trichloro-2,2-bis-(4-chlorophenyl)ethane metabolic process","secondary_identifiers":["UM-BBD_pathwayID:ddt"],"synonyms":[{"name":"1,1,1-trichloro-2,2-bis-(4-chlorophenyl)ethane metabolism","type":"exact"},{"name":"DDT metabolic process","type":"exact"},{"name":"DDT metabolism","type":"exact"}],"termid":"GO:0018977"}


id: MONDO:0014250
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Familial hyperprolactinemia is a rare, genetic endocrine disorder characterized by persistently high prolactin serum levels (not associated with gestation, puerperium, drug intake or pituitary tumor) in multiple affected family members. Clinically it manifests with signs usually observed in hyperprolactinemia, which are: secondary medroxyprogesterone acetate (MPA)-negative amenorrhea and galactorrhea in female patients, and hypogonadism and decreased testosterone level-driven sexual disfunction in male patients. Oligomenorrhea and primary infertility have also been reported in some female patients.","definition_xrefs":["Orphanet:397685"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hyperprolactinemia","termid":"MONDO:0005804"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"familial hyperprolactinemia","secondary_identifiers":["ICD10CM:E22.1","OMIM:615555","UMLS:C4706551","SCTID:763715007","GARD:17634","MEDGEN:1645317"],"synonyms":[{"name":"HPRL","type":"related"},{"name":"familial hyperprolactinemia","type":"exact"},{"name":"familial isolated prolactin receptor deficiency","type":"exact"},{"name":"hereditary hyperprolactinemia (disease)","type":"exact"},{"name":"hyperprolactinemia","type":"related"}],"termid":"MONDO:0014250","xrefs":{"Monarch":{"xref_id":"0014250"}}}


id: PBO:0053616
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 656","termid":"PBO:0053616"}


id: PBO:0039960
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor like GTPase 2 binding protein pseudogene 3","termid":"PBO:0039960"}


id: PBO:0038546
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"abhydrolase domain containing 17A, depalmitoylase","termid":"PBO:0038546"}


id: PR:O60105
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An adenylosuccinate lyase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO04018"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenylosuccinate lyase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC14F5.09c","secondary_identifiers":["UniProtKB:O60105"],"synonyms":[{"name":"ASL (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ASase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Adenylosuccinase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-ADSL","type":"exact"}],"termid":"PR:O60105"}


id: GO:2000362
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of prostaglandin-E synthase activity.","definition_xrefs":["GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of prostaglandin-E synthase activity (obsolete GO:2000362)","synonyms":[{"name":"negative regulation of (5Z,13E)-(15S)-9alpha,11alpha-epidioxy-15-hydroxyprosta-5,13-dienoate E-isomerase activity","type":"exact"},{"name":"negative regulation of PGE isomerase activity","type":"exact"},{"name":"negative regulation of PGE2 isomerase activity","type":"exact"},{"name":"negative regulation of PGH-PGE isomerase activity","type":"exact"},{"name":"negative regulation of Prostaglandin-H(2) E-isomerase activity","type":"exact"},{"name":"negative regulation of endoperoxide isomerase activity","type":"exact"},{"name":"negative regulation of prostaglandin H-E isomerase activity","type":"exact"},{"name":"negative regulation of prostaglandin R-prostaglandin E isomerase activity","type":"exact"},{"name":"negative regulation of prostaglandin endoperoxide E isomerase activity","type":"exact"},{"name":"negative regulation of prostaglandin endoperoxide E2 isomerase activity","type":"exact"},{"name":"negative regulation of prostaglandin-H2 E-isomerase activity","type":"exact"}],"termid":"GO:2000362"}


id: MONDO:0958332
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary neuromuscular disease","termid":"MONDO:0100546"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuromuscular disorder, congenital, with dysmorphic facies","secondary_identifiers":["MEDGEN:1857169","UMLS:C5935643","OMIM:620775"],"termid":"MONDO:0958332","xrefs":{"Monarch":{"xref_id":"0958332"}}}


id: PR:000050464
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A cell division control protein 12 (Schizosaccharomyces pombe) that has not been phosphorylated on residues equivalent to Thr-20, Thr-22, Ser-64, Thr-95, Thr-151 and Ser-463 of the amino acid sequence represented by UniProtKB:Q10059. Example: UniProtKB:Q10059, Thr-20/Thr-22/Ser-64/Thr-95/Thr-151/Ser-463, PR:000026291.","definition_xrefs":["PMID:29343550","PomBase:VW","PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell division control protein 12 (Schizosaccharomyces pombe)","termid":"PR:000044734"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cdc12/UnPhos(T20,T21,S64,T95,T151,S463)","pombase_gene_id":"SPAC1F5.04c","synonyms":[{"name":"PomBase_original_PRO_term_name: cell division control protein 12 unphosphorylated 1 (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-cdc12/UnPhos:1","type":"exact"},{"name":"UniProtKB:Q10059, Thr-20/Thr-22/Ser-64/Thr-95/Thr-151/Ser-463, PR:000026291","type":"narrow"},{"name":"cdc12/UnPhos(T20,T21,S64,T95,T151,S463)","type":"exact"}],"termid":"PR:000050464"}


id: GO:0048911
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of an efferent axon in the anterior lateral line nerve over time from its formation to the mature structure. This process includes axonogenesis and pathfinding of the efferent axons in the anterior lateral line nerve.","definition_xrefs":["PMID:15018940"],"direct_ancestors":[{"relation_name":"is_a","term_name":"efferent axon development in a lateral line nerve","termid":"GO:0048894"},{"relation_name":"part_of","term_name":"anterior lateral line nerve development","termid":"GO:0048909"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"efferent axon development in anterior lateral line nerve","termid":"GO:0048911"}


id: GO:0097244
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a flavonol, a flavonoid that contains a 3-hydroxy-2-phenylchromen-4-one backbone.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anion binding","termid":"GO:0043168"},{"relation_name":"is_a","term_name":"flavonoid binding","termid":"GO:0097243"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"flavonol binding","termid":"GO:0097244"}


id: RO:HOM0000003
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Similarity that is characterized by the organization of anatomical structures through the expression of homologous or identical patterning genes.","direct_ancestors":[{"relation_name":"is_a","term_name":"evolutionarily_related_to","termid":"RO:0002320"},{"relation_name":"is_a","term_name":"in_similarity_relationship_with","termid":"RO:HOM0000000"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"in_homocracy_relationship_with","synonyms":[{"name":"homocracous to","type":"exact"}],"termid":"RO:HOM0000003"}


id: PBO:0061197
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nitric oxide associated 1","termid":"PBO:0061197"}


id: GO:0030955
data:
  {"annotated_genes":["SJAG_02796"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[68969],"is_not":false,"summary":null,"term":"GO:0030955"}]},"cv_name":"molecular_function","definition":"Binding to a potassium ion (K+).","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alkali metal ion binding","termid":"GO:0031420"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02796":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0046872"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0046872"],"is_obsolete":false,"name":"potassium ion binding","references_by_uniquename":{"GO_REF:0000002":null},"synonyms":[{"name":"K ion binding","type":"exact"}],"termid":"GO:0030955","terms_by_termid":{"GO:0030955":null}}


id: GO:0035436
data:
  {"annotated_genes":["SJAG_04406","SJAG_00276"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[93470,112649],"is_not":false,"summary":null,"term":"GO:0035436"}]},"cv_name":"biological_process","definition":"The process in which triose phosphate (glyceraldehyde 3-phosphate) is transported across a membrane. Glyceraldehyde 3-phosphate is any organic three carbon compound phosphate ester.","definition_xrefs":["GOC:bf","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic anion transport","termid":"GO:0015711"},{"relation_name":"is_a","term_name":"triose phosphate transport","termid":"GO:0015717"},{"relation_name":"is_a","term_name":"transmembrane transport","termid":"GO:0055085"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00276":null,"SJAG_04406":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0055085","GO:0051179"],"is_obsolete":false,"name":"triose phosphate transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"triose phosphate membrane transport","type":"exact"}],"termid":"GO:0035436","terms_by_termid":{"GO:0035436":null}}


id: GO:1900634
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of pentadecane.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alkane biosynthetic process","termid":"GO:0043447"},{"relation_name":"is_a","term_name":"pentadecane metabolic process","termid":"GO:1900633"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pentadecane biosynthetic process","synonyms":[{"name":"pentadecane anabolism","type":"exact"},{"name":"pentadecane biosynthesis","type":"exact"},{"name":"pentadecane formation","type":"exact"},{"name":"pentadecane synthesis","type":"exact"}],"termid":"GO:1900634"}


id: MONDO:0003439
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An exophytic glandular neoplasm of the bladder, morphologically similar to its intestinal counterpart. It often coexists with in situ or infiltrating bladder adenocarcinoma.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"villous adenoma","termid":"MONDO:0000502"},{"relation_name":"is_a","term_name":"urinary bladder neoplasm","termid":"MONDO:0004987"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"urinary bladder villous adenoma","secondary_identifiers":["MEDGEN:234977","DOID:5427","NCIT:C7414","UMLS:C1336893"],"synonyms":[{"name":"bladder villous adenoma","type":"exact"},{"name":"urinary bladder villous adenoma","type":"exact"},{"name":"villous adenoma of the urinary bladder","type":"exact"},{"name":"villous adenoma of urinary bladder","type":"exact"}],"termid":"MONDO:0003439","xrefs":{"Monarch":{"xref_id":"0003439"}}}


id: PBO:0090100
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diphosphomevalonate decarboxylase mvd1","termid":"PBO:0090100"}


id: GO:0102701
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: geranyl diphosphate(3-) = tricyclene + diphosphoric acid.","definition_xrefs":["EC:4.2.3.105","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on phosphates","termid":"GO:0016838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"tricyclene synthase activity","secondary_identifiers":["MetaCyc:RXN-5121","RHEA:32687"],"termid":"GO:0102701"}


id: GO:0062210
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regeneration process by which a damaged or lost shoot regrows or re-differentiates. This process may occur via de-differentiation and subsequent reprogramming of somatic cells or activation of existing undifferentiated (meristematic) cells to produce a new shoot meristem and subsequently a new shoot.","definition_xrefs":["PMID:27143753"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regeneration","termid":"GO:0031099"},{"relation_name":"is_a","term_name":"shoot system development","termid":"GO:0048367"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"shoot regeneration","synonyms":[{"name":"shoot system regeneration","type":"exact"}],"termid":"GO:0062210"}


id: PBO:0000246
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TRRAP family protein","termid":"PBO:0000246"}


id: MONDO:0012469
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"myopia","termid":"MONDO:0001384"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"myopia 14","secondary_identifiers":["MESH:C565202","UMLS:C1853196","OMIM:610320","MEDGEN:343990"],"synonyms":[{"name":"MYP14","type":"exact"},{"name":"myopia 14","type":"exact"}],"termid":"MONDO:0012469","xrefs":{"Monarch":{"xref_id":"0012469"}}}


id: PBO:0028915
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_transcription_during_cellular_response_to_heavy_metal_stress","termid":"PBO:0028915"}


id: MONDO:0023310
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete hemiplegic migraine (obsolete MONDO:0023310)","termid":"MONDO:0023310","xrefs":{"Monarch":{"xref_id":"0023310"}}}


id: MONDO:0018548
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Acute poisoning with a membrane-stabilizing effect is potentially life-threatening. The principle drugs involved are tricyclic antidepressants, chloroquine, some types of beta blockers, class IA antiarrhythmics, carbamazepin and cocaine.","definition_xrefs":["Orphanet:43119"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acute disease","termid":"MONDO:0020683"},{"relation_name":"is_a","term_name":"poisoning","termid":"MONDO:0029000"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acute poisoning by drugs with membrane-stabilizing effect","termid":"MONDO:0018548","xrefs":{"Monarch":{"xref_id":"0018548"}}}


id: PBO:0065896
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAB40B, member RAS oncogene family","termid":"PBO:0065896"}


id: PBO:0076067
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STPG3 antisense RNA 1","termid":"PBO:0076067"}


id: MONDO:0009323
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Halothane hepatitis","secondary_identifiers":["MEDGEN:66842","SCTID:235873001","MESH:C562477","OMIM:234350","UMLS:C0241913"],"synonyms":[{"name":"Halothane hepatitis","type":"exact"}],"termid":"MONDO:0009323","xrefs":{"Monarch":{"xref_id":"0009323"}}}


id: PBO:0091106
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anaphase-promoting complex platform subcomplex scaffold subunit Apc1","termid":"PBO:0091106"}


id: GO:0080038
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cytokinin signaling.","definition_xrefs":["GOC:dhl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of signal transduction","termid":"GO:0009967"},{"relation_name":"is_a","term_name":"regulation of cytokinin-activated signaling pathway","termid":"GO:0080036"},{"relation_name":"positively_regulates","term_name":"cytokinin-activated signaling pathway","termid":"GO:0009736"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of cytokinin-activated signaling pathway","synonyms":[{"name":"positive regulation of cytokinin mediated signaling pathway","type":"related"},{"name":"positive regulation of cytokinin mediated signalling","type":"exact"}],"termid":"GO:0080038"}


id: MONDO:0010212
data:
  {"annotated_genes":["SJAG_00995"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87039],"is_not":false,"summary":null,"term":"MONDO:0010212"}]},"cv_name":"mondo","definition":"Any xeroderma pigmentosum in which the cause of the disease is a mutation in the ERCC2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xeroderma pigmentosum-Cockayne syndrome complex","termid":"MONDO:0016354"},{"relation_name":"is_a","term_name":"xeroderma pigmentosum","termid":"MONDO:0019600"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00995":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0021190"},{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0005066","MONDO:0021190"],"is_obsolete":false,"name":"xeroderma pigmentosum group D","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["Orphanet:276258","NCIT:C3967","MEDGEN:75656","DOID:0110845","GARD:16452","UMLS:C0268138","MESH:C562591","OMIM:278730","SCTID:68637004"],"synonyms":[{"name":"ERCC2 xeroderma pigmentosum","type":"exact"},{"name":"XP group D","type":"exact"},{"name":"XP group H","type":"exact"},{"name":"XP, Group D","type":"related"},{"name":"XP, Group H","type":"related"},{"name":"XP, Group H, formerly","type":"related"},{"name":"XP-D","type":"exact"},{"name":"XP4","type":"exact"},{"name":"XP4 xeroderma pigmentosum VIII","type":"related"},{"name":"XP4 xeroderma pigmentosum VIII, formerly","type":"related"},{"name":"XP8","type":"exact"},{"name":"XPD","type":"exact"},{"name":"XPDC","type":"exact"},{"name":"XPH","type":"exact"},{"name":"xeroderma pigmentosum 4","type":"related"},{"name":"xeroderma pigmentosum IV","type":"exact"},{"name":"xeroderma pigmentosum VIII","type":"exact"},{"name":"xeroderma pigmentosum caused by mutation in ERCC2","type":"exact"},{"name":"xeroderma pigmentosum group D","type":"exact"},{"name":"xeroderma pigmentosum group type D","type":"exact"},{"name":"xeroderma pigmentosum, complementation group D","type":"related"},{"name":"xeroderma pigmentosum, complementation group type D","type":"exact"},{"name":"xeroderma pigmentosum, group D","type":"exact"}],"termid":"MONDO:0010212","terms_by_termid":{"MONDO:0010212":null},"xrefs":{"Monarch":{"xref_id":"0010212"}}}


id: PBO:0050299
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 1","termid":"PBO:0050299"}


id: PBO:0033831
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centractin family actin-like protein Arp1","termid":"PBO:0033831"}


id: PBO:0063375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PCYT1B antisense RNA 1","termid":"PBO:0063375"}


id: MONDO:0011834
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Spinocerebellar ataxia type 18 (SCA18) is a very rare subtype of type I autosomal dominant cerebellar ataxia (ADCA type I). It is characterized by sensory neuropathy and cerebellar ataxia.","definition_xrefs":["Orphanet:98771"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant cerebellar ataxia type I","termid":"MONDO:0019792"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002039"},{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0005559","MONDO:0002039"],"is_obsolete":false,"name":"spinocerebellar ataxia type 18","secondary_identifiers":["SCTID:719250005","MESH:C537197","OMIM:607458","MEDGEN:336066","GARD:9976","icd11.foundation:1564628854","DOID:0050969","UMLS:C1843884"],"synonyms":[{"name":"SCA18","type":"exact"},{"name":"SMNA","type":"related"},{"name":"sensorimotor neuropathy with ataxia autosomal dominant","type":"related"},{"name":"sensorimotor neuropathy with ataxia, autosomal dominant","type":"related"},{"name":"spinocerebellar ataxia 18","type":"related"}],"termid":"MONDO:0011834","xrefs":{"Monarch":{"xref_id":"0011834"}}}


id: MONDO:0015062
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A well differentiated, low or intermediate grade tumor with neuroendocrine differentiation that arises from the stomach.","definition_xrefs":["NCIT:C95871"],"direct_ancestors":[{"relation_name":"is_a","term_name":"digestive system neuroendocrine tumor, grade 1/2","termid":"MONDO:0000386"},{"relation_name":"is_a","term_name":"gastric neuroendocrine neoplasm","termid":"MONDO:0003111"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"gastric neuroendocrine tumor, well differentiated, low or intermediate grade","secondary_identifiers":["MEDGEN:474032","ONCOTREE:SWDNET","UMLS:C3272399"],"synonyms":[{"name":"GNET","type":"exact"},{"name":"gastric NET","type":"exact"},{"name":"gastric NET G1/2","type":"exact"},{"name":"gastric neuroendocrine tumor","type":"exact"},{"name":"gastric neuroendocrine tumour","type":"exact"},{"name":"gastric well differentiated endocrine tumor","type":"exact"},{"name":"gastric well differentiated endocrine tumor/carcinoma","type":"exact"},{"name":"gastric well differentiated endocrine tumour","type":"exact"},{"name":"well-differentiated neuroendocrine tumors of the stomach","type":"related"},{"name":"well-differentiated neuroendocrine tumours of the stomach","type":"related"}],"termid":"MONDO:0015062","xrefs":{"Monarch":{"xref_id":"0015062"}}}


id: GO:0090402
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cellular senescence process associated with the dismantling of a cell as a response to oncogenic stress, such as the activation of the Ras oncogenic family.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular senescence","termid":"GO:0090398"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"oncogene-induced cell senescence","synonyms":[{"name":"OIS","type":"exact"}],"termid":"GO:0090402"}


id: GO:0016009
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The smaller of the two mitochondrial derivatives that arise by the unfolding of the Nebenkern during flagellum elongation.","definition_xrefs":["PMID:30802236","PMID:24211517","GOC:mah","PMID:17123504"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial derivative","termid":"GO:0016007"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"minor mitochondrial derivative","termid":"GO:0016009"}


id: FYPO:0008163
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the number of nuclear foci are increased.","direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular physical quality phenotype","termid":"FYPO:0004638"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"increased number of nuclear foci","termid":"FYPO:0008163"}


id: MONDO:0012835
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any systemic lupus erythematosus in which the cause of the disease is a mutation in the STAT4 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"systemic lupus erythematosus, susceptibility to, 11","secondary_identifiers":["OMIM:612253","MEDGEN:393656","UMLS:C2677096"],"synonyms":[{"name":"SLEB11","type":"related"},{"name":"STAT4 systemic lupus erythematosus (disease)","type":"exact"},{"name":"susceptibility to systemic lupus erythematosus 11","type":"related"},{"name":"systemic lupus erythematosus (disease) caused by mutation in STAT4","type":"exact"},{"name":"systemic lupus erythematosus, susceptibility to, 11","type":"exact"},{"name":"systemic lupus erythematosus, susceptibility to, type 11","type":"exact"}],"termid":"MONDO:0012835","xrefs":{"Monarch":{"xref_id":"0012835"}}}


id: GO:0072692
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Repression of transcription of DNA at the central core of a regional centromere by altering the structure of chromatin.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete chromatin silencing at centromere central core (obsolete GO:0072692)","synonyms":[{"name":"centromere central core chromatin silencing","type":"exact"},{"name":"chromatin silencing at centromeric central core","type":"exact"},{"name":"chromatin silencing at chromosome kinetochore domain","type":"exact"},{"name":"heterochromatic silencing at centromere central core","type":"exact"}],"termid":"GO:0072692"}


id: GO:0001108
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a component of the basal transcription machinery which is composed of a bacterial-type RNA polymerase core enzyme and a sigma factor, the minimal set of factors required for formation of the preinitiation complex (PIC) by a bacterial-type RNA polymerase.","definition_xrefs":["GOC:txnOH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"basal transcription machinery binding","termid":"GO:0001098"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"bacterial-type RNA polymerase holo enzyme binding","synonyms":[{"name":"basal bacterial-type RNA polymerase transcription machinery binding","type":"exact"}],"termid":"GO:0001108"}


id: PBO:0085281
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Peroxisomal membrane protein (PMP); required for proper localization and stability of PMPs; anchors peroxisome retention factor Inp1p at the peroxisomal membrane; interacts with Pex19p","termid":"PBO:0085281"}


id: GO:0021774
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of molecular signals initiated by binding of a ligand to a retinoic acid receptor in a precursor cell in the ventral spinal cord that contributes to the commitment of the precursor cell to an interneuron fate.","definition_xrefs":["PMID:11262869","GOC:cls","GOC:dgh","GOC:tb","GO_REF:0000021","GOC:jid","GOC:dph","GOC:sdb_2009"],"gene_count":0,"genotype_count":0,"name":"obsolete retinoic acid receptor signaling pathway involved in ventral spinal cord interneuron specification (obsolete GO:0021774)","synonyms":[{"name":"retinoic acid receptor signalling pathway involved in ventral spinal cord interneuron specification","type":"exact"}],"termid":"GO:0021774"}


id: GO:0009209
data:
  {"annotated_genes":["SJAG_02887","SJAG_05024","SJAG_00533","SJAG_03708"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[63433],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044210"},{"annotations":[64654],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006241"},{"annotations":[68266,93330],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044211"},{"annotations":[64653],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006228"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of pyrimidine ribonucleoside triphosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with triphosphate on the sugar.","definition_xrefs":["ISBN:0198506732","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleoside triphosphate biosynthetic process","termid":"GO:0009148"},{"relation_name":"is_a","term_name":"ribonucleoside triphosphate biosynthetic process","termid":"GO:0009201"},{"relation_name":"is_a","term_name":"pyrimidine ribonucleoside triphosphate metabolic process","termid":"GO:0009208"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00533":null,"SJAG_02887":null,"SJAG_03708":null,"SJAG_05024":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"pyrimidine ribonucleoside triphosphate biosynthetic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000041":null,"GO_REF:0000107":null},"synonyms":[{"name":"pyrimidine ribonucleoside triphosphate anabolism","type":"exact"},{"name":"pyrimidine ribonucleoside triphosphate biosynthesis","type":"exact"},{"name":"pyrimidine ribonucleoside triphosphate formation","type":"exact"},{"name":"pyrimidine ribonucleoside triphosphate synthesis","type":"exact"}],"termid":"GO:0009209","terms_by_termid":{"GO:0006228":null,"GO:0006241":null,"GO:0044210":null,"GO:0044211":null}}


id: GO:1902074
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salt stimulus.","definition_xrefs":["PMID:16666921","GOC:mls","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to chemical","termid":"GO:0042221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to salt","synonyms":[{"name":"response to salinity","type":"narrow"}],"termid":"GO:1902074"}


id: GO:1990277
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A type of reproduction in which new individuals are produced from two individuals, with the fusion of two somatic cells.","definition_xrefs":["PMID:26210747","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reproductive process","termid":"GO:0022414"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"parasexual reproduction with cellular fusion","secondary_identifiers":["Wikipedia:Parasexual_cycle"],"synonyms":[{"name":"mating","type":"broad"},{"name":"parasexual conjugation with cellular fusion","type":"exact"}],"termid":"GO:1990277"}


id: PBO:0028618
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_U1_snRNP_binding","termid":"PBO:0028618"}


id: MOD:00222
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-tryptophan residue to 2'-alpha-mannosyl-L-tryptophan.","definition_xrefs":["RESID:AA0217","PubMed:15279557","Unimod:41#W","PubMed:7947762","PubMed:7547911"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C-glycosylated residue","termid":"MOD:00421"},{"relation_name":"is_a","term_name":"mannosylated residue","termid":"MOD:00595"},{"relation_name":"is_a","term_name":"monohexosylated (Hex1)","termid":"MOD:00761"},{"relation_name":"is_a","term_name":"modified L-tryptophan residue","termid":"MOD:00918"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"2'-alpha-mannosyl-L-tryptophan","synonyms":[{"name":"(2S)-2-amino-3-(2-beta-D-mannopyranosyl-1H-indol-3-yl)propanoic acid","type":"exact"},{"name":"2'-mannosyl-L-tryptophan","type":"exact"},{"name":"2'-tryptophan C-mannoside","type":"exact"},{"name":"C2'ManTrp","type":"exact"},{"name":"CARBOHYD C-linked (Man) tryptophan","type":"exact"},{"name":"Hex","type":"related"},{"name":"Hexose","type":"related"}],"termid":"MOD:00222"}


id: PBO:0049678
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HADHA pseudogene 2","termid":"PBO:0049678"}


id: MONDO:0024363
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"REM sleep behavior disorder","termid":"MONDO:0005937"},{"relation_name":"is_a","term_name":"circadian rhythm sleep disorder","termid":"MONDO:0024361"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rapid eye movement sleep disorder","secondary_identifiers":["SCTID:192004002","ICD9:379.59","UMLS:C0393768","MEDGEN:581569"],"synonyms":[{"name":"repeated rapid eye movement sleep interruptions","type":"exact"}],"termid":"MONDO:0024363","xrefs":{"Monarch":{"xref_id":"0024363"}}}


id: PBO:0060964
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NFU1 iron-sulfur cluster scaffold pseudogene 1","termid":"PBO:0060964"}


id: PBO:0028927
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-premature_protein_localization_to_medial_cortex_during_vegetative_growth","termid":"PBO:0028927"}


id: GO:0100070
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any transcription from RNA polymerase II promoter process that regulates fatty acid biosynthetic process.","definition_xrefs":["GOC:cjm","GOC:obol"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of fatty acid biosynthetic process by transcription from RNA polymerase II promoter (obsolete GO:0100070)","termid":"GO:0100070"}


id: MOD:01607
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-glutamic acid residue to 5-glutamyl allysine.","definition_xrefs":["RESID:AA0504","PubMed:19620981"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amidated residue","termid":"MOD:00674"},{"relation_name":"is_a","term_name":"modified L-glutamic acid residue","termid":"MOD:00906"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5-glutamyl allysine","synonyms":[{"name":"(2S)-2-([(4S)-4-amino-4-carboxybutanoyl]amino)-6-oxohexanoic acid","type":"exact"},{"name":"2-(5-glutamyl)amino-6-oxohexanoic acid","type":"exact"},{"name":"5-glutamyl allysine","type":"exact"},{"name":"N2-(gamma-glutamyl)allysine","type":"exact"},{"name":"N2-(isoglutamyl)allysine","type":"exact"},{"name":"alpha-(gamma-glutamyl)allysine","type":"exact"}],"termid":"MOD:01607"}


id: PBO:0051701
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inositol polyphosphate-5-phosphatase A","termid":"PBO:0051701"}


id: GO:0016507
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A multienzyme complex possessing three activities in two subunits (alpha and beta) that catalyzes three steps of the fatty acid beta-oxidation cycle within the mitochondrial matrix. The alpha subunit comprises the enoyl-CoA hydratase (ECH) and 3-hydroxyacyl-CoA dehydrogenase (HACD) activities, and the beta subunit contains the acetyl-CoA C-acyltransferase (KACT)/thiolase activity.","definition_xrefs":["GOC:sjm","PMID:29915090"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid beta-oxidation multienzyme complex","termid":"GO:0036125"},{"relation_name":"is_a","term_name":"mitochondrial protein-containing complex","termid":"GO:0098798"},{"relation_name":"part_of","term_name":"mitochondrial matrix","termid":"GO:0005759"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005739"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005739","GO:0005575","GO:0032991","GO:0005737"],"is_obsolete":false,"name":"mitochondrial fatty acid beta-oxidation multienzyme complex","synonyms":[{"name":"fatty acid beta-oxidation multienzyme complex","type":"broad"},{"name":"trifunctional enzyme","type":"related"}],"termid":"GO:0016507"}


id: MONDO:0017989
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"His bundle tachycardia is a very rare congenital genetic tachyarrhythmia characterized by incessant tachycardia and high morbidity and mortality.","definition_xrefs":["Orphanet:3283"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac rhythm disease","termid":"MONDO:0007263"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"His bundle tachycardia","secondary_identifiers":["SCTID:233901002","MESH:D013613","GARD:2706","ICD9:427.89","NCIT:C111646","MEDGEN:21066","icd11.foundation:962827983","UMLS:C0039235"],"synonyms":[{"name":"JET","type":"exact"},{"name":"junctional ectopic tachycardia","type":"exact"}],"termid":"MONDO:0017989","xrefs":{"Monarch":{"xref_id":"0017989"}}}


id: PBO:0043463
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCR4-NOT transcription complex subunit 4","termid":"PBO:0043463"}


id: MONDO:0012317
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"chronic intestinal pseudoobstruction","termid":"MONDO:0017574"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"visceral neuropathy, familial, 3, autosomal dominant","secondary_identifiers":["DOID:0080682","OMIM:609629","UMLS:C1864996","MEDGEN:351272"],"synonyms":[{"name":"enteric neuropathy, familial","type":"related"},{"name":"pseudoobstruction, chronic intestinal, neuropathic","type":"related"},{"name":"pseudoobstruction, idiopathic intestinal","type":"related"},{"name":"visceral neuropathy, familial, autosomal dominant","type":"exact"}],"termid":"MONDO:0012317","xrefs":{"Monarch":{"xref_id":"0012317"}}}


id: GO:0035393
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of chemokine (C-X-C motif) ligand 9 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chemokine production","termid":"GO:0032602"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"chemokine (C-X-C motif) ligand 9 production","synonyms":[{"name":"CXCL9 production","type":"exact"},{"name":"MIG production","type":"exact"},{"name":"Monokine induced by gamma interferon production","type":"exact"}],"termid":"GO:0035393"}


id: MONDO:1010060
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pheochromocytoma that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neoplasm, non-human animal","termid":"MONDO:0700098"},{"relation_name":"is_a","term_name":"endocrine system disorder, non-human animal","termid":"MONDO:1011317"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pheochromocytoma, non-human animal","secondary_identifiers":["OMIA:001268"],"termid":"MONDO:1010060","xrefs":{"Monarch":{"xref_id":"1010060"}}}


id: GO:0038084
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by vascular endothelial growth factor (VEGF) binding its receptor on the surface of the target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:signaling","PMID:17470632"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell surface receptor protein tyrosine kinase signaling pathway","termid":"GO:0007169"},{"relation_name":"part_of","term_name":"cellular response to vascular endothelial growth factor stimulus","termid":"GO:0035924"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"vascular endothelial growth factor signaling pathway","synonyms":[{"name":"VEGF signaling","type":"exact"},{"name":"VEGF-activated signaling pathway","type":"exact"},{"name":"vascular endothelial growth factor signalling pathway","type":"exact"}],"termid":"GO:0038084"}


id: PBO:0066911
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 212","termid":"PBO:0066911"}


id: MONDO:0018512
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Any of the forms of epithelial tumor of colon that have a rare incidence.","definition_xrefs":["MONDO:patterns/rare"],"gene_count":0,"genotype_count":0,"name":"obsolete rare epithelial tumor of colon (obsolete MONDO:0018512)","secondary_identifiers":["Orphanet:423991"],"synonyms":[{"name":"rare epithelial tumor of colon","type":"exact"}],"termid":"MONDO:0018512","xrefs":{"Monarch":{"xref_id":"0018512"}}}


id: PBO:0058816
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 7973-2","termid":"PBO:0058816"}


id: PBO:0003110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis protein Brx1 (predicted)","termid":"PBO:0003110"}


id: MONDO:0010234
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete body length, mouse, human homolog (obsolete MONDO:0010234)","synonyms":[{"name":"body length, mouse, HUMAN homolog","type":"related"}],"termid":"MONDO:0010234","xrefs":{"Monarch":{"xref_id":"0010234"}}}


id: PBO:0066534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulator of G protein signaling 1","termid":"PBO:0066534"}


id: GO:0015832
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete holin (obsolete GO:0015832)","synonyms":[{"name":"holin","type":"exact"}],"termid":"GO:0015832"}


id: PBO:0003124
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hexitol dehydrogenase (predicted)","termid":"PBO:0003124"}


id: PBO:0071985
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S6 pseudogene 14","termid":"PBO:0071985"}


id: GO:0072172
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process pertaining to the initial formation of a mesonephric tubule from unspecified parts. A mesonephric tubule is an epithelial tube that is part of the mesonephros.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephron tubule formation","termid":"GO:0072079"},{"relation_name":"part_of","term_name":"mesonephric tubule morphogenesis","termid":"GO:0072171"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesonephric tubule formation","termid":"GO:0072172"}


id: PR:O59764
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An ER membrane protein complex subunit 6 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04440","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER membrane protein complex subunit 6 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1020.11c","secondary_identifiers":["UniProtKB:O59764"],"synonyms":[{"name":"Spom972h-EMC6","type":"exact"}],"termid":"PR:O59764"}


id: GO:1903466
data:
  {"annotated_genes":["SJAG_03160","SJAG_01210","SJAG_03048","SJAG_02074","SJAG_03695","SJAG_02162"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[109275,98131,102730],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903467"},{"annotations":[103689,112427,117671],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903468"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of DNA replication initiation involved in mitotic DNA replication.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","GOC:mtg_cell_cycle","PMID:1234"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of DNA-templated DNA replication initiation","termid":"GO:0030174"},{"relation_name":"is_a","term_name":"regulation of mitotic cell cycle DNA replication","termid":"GO:1903463"},{"relation_name":"regulates","term_name":"mitotic DNA replication initiation","termid":"GO:1902975"}],"gene_count":6,"genes_by_uniquename":{"SJAG_01210":null,"SJAG_02074":null,"SJAG_02162":null,"SJAG_03048":null,"SJAG_03160":null,"SJAG_03695":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0006260"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0007049","GO:0006260","GO:0008150","GO:0006259"],"is_obsolete":false,"name":"regulation of mitotic DNA replication initiation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of DNA replication initiation involved in mitotic cell cycle DNA replication","type":"exact"}],"termid":"GO:1903466","terms_by_termid":{"GO:1903467":null,"GO:1903468":null}}


id: MONDO:0036483
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Jeune syndrome","termid":"MONDO:0018770"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"short-rib thoracic dysplasia 18 with polydactyly","secondary_identifiers":["OMIM:617866","DOID:0080293","MEDGEN:1632904","UMLS:C4693420"],"synonyms":[{"name":"SRTD18","type":"related"},{"name":"short-rib thoracic dysplasia 18 with polydactyly","type":"exact"}],"termid":"MONDO:0036483","xrefs":{"Monarch":{"xref_id":"0036483"}}}


id: GO:0032717
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-8 production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokine production","termid":"GO:0001818"},{"relation_name":"is_a","term_name":"regulation of interleukin-8 production","termid":"GO:0032677"},{"relation_name":"negatively_regulates","term_name":"interleukin-8 production","termid":"GO:0032637"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of interleukin-8 production","secondary_identifiers":["GO:0045415","GO:2000483"],"synonyms":[{"name":"down regulation of interleukin-8 production","type":"exact"},{"name":"down-regulation of interleukin-8 production","type":"exact"},{"name":"downregulation of interleukin-8 production","type":"exact"},{"name":"inhibition of interleukin-8 production","type":"narrow"},{"name":"negative regulation of IL-8 production","type":"exact"},{"name":"negative regulation of interleukin-8 biosynthetic process","type":"narrow"},{"name":"negative regulation of interleukin-8 secretion","type":"narrow"}],"termid":"GO:0032717"}


id: PBO:0075342
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sortilin related receptor 1","termid":"PBO:0075342"}


id: GO:0048027
data:
  {"annotated_genes":["SJAG_01249"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[100826],"is_not":false,"summary":null,"term":"GO:0048027"}]},"cv_name":"molecular_function","definition":"Binding to an mRNA molecule at its 5' untranslated region.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA binding","termid":"GO:0003729"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01249":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003723"}],"interesting_parent_ids":["GO:0003723","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"mRNA 5'-UTR binding","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"mRNA 5' UTR binding","type":"exact"}],"termid":"GO:0048027","terms_by_termid":{"GO:0048027":null}}


id: GO:0047874
data:
  {"annotated_genes":["SJAG_02056"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[74029],"is_not":false,"summary":null,"term":"GO:0047874"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: dolichyl diphosphate + H2O = dolichyl phosphate + phosphate.","definition_xrefs":["EC:3.6.1.43","MetaCyc:DOLICHYLDIPHOSPHATASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrophosphatase activity","termid":"GO:0016462"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02056":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"dolichyldiphosphatase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["RHEA:14385","Reactome:R-HSA-446200"],"synonyms":[{"name":"dolichol diphosphatase activity","type":"related"},{"name":"dolichyl diphosphate phosphohydrolase activity","type":"related"},{"name":"dolichyl pyrophosphatase activity","type":"related"},{"name":"dolichyl-diphosphate phosphohydrolase activity","type":"related"}],"termid":"GO:0047874","terms_by_termid":{"GO:0047874":null}}


id: GO:0039584
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of host protein kinase activity.","definition_xrefs":["GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete suppression by virus of host protein kinase activity (obsolete GO:0039584)","termid":"GO:0039584"}


id: PBO:0069896
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1187, pseudogene","termid":"PBO:0069896"}


id: GO:0009059
data:
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