# terms

id: MONDO:0014219
data:
  {"annotated_genes":["SJAG_00890"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86128],"is_not":false,"summary":null,"term":"MONDO:0014219"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00890":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025"],"is_obsolete":false,"name":"alacrima, achalasia, and intellectual disability syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:615510","DOID:0112321","UMLS:C4706563","MEDGEN:1640947","GARD:12404"],"synonyms":[{"name":"AAMR","type":"related"},{"name":"GMPPA-CDG","type":"related"},{"name":"alacrima, achalasia, and intellectual disability syndrome","type":"exact"},{"name":"alacrima, achalasia, and mental retardation syndrome","type":"exact"}],"termid":"MONDO:0014219","terms_by_termid":{"MONDO:0014219":null},"xrefs":{"Monarch":{"xref_id":"0014219"}}}


id: MONDO:0020035
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare otorhinolaryngologic tumor (obsolete MONDO:0020035)","secondary_identifiers":["Orphanet:98061"],"synonyms":[{"name":"rare ORL cancer","type":"exact"},{"name":"rare ORL neoplasm","type":"exact"},{"name":"rare ORL tumor","type":"exact"}],"termid":"MONDO:0020035","xrefs":{"Monarch":{"xref_id":"0020035"}}}


id: PBO:0040718
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCL9 transcription coactivator","termid":"PBO:0040718"}


id: SO:1000082
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Sequence variant affects the stability of the transcript.","definition_xrefs":["EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000082 sequence variant_affecting_transcript_stability (obsolete SO:1000082)","synonyms":[{"name":"mutation affecting transcript stability","type":"related"},{"name":"sequence variant affecting transcript stability","type":"exact"}],"termid":"SO:1000082"}


id: PBO:0053799
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1054","termid":"PBO:0053799"}


id: PBO:0084119
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Heme a synthase; required for the hydroxylation of heme O to form heme A, an essential prosthetic group for cytochrome c oxidase; oligomerization is required for function","termid":"PBO:0084119"}


id: PBO:0003403
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pex16 family peroxisome import protein (predicted)","termid":"PBO:0003403"}


id: MOD:00043
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to S-phospho-L-cysteine.","definition_xrefs":["PubMed:3142516","PubMed:8128219","PubMed:7961745","Unimod:21#C","RESID:AA0034"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphorylated residue","termid":"MOD:00696"},{"relation_name":"is_a","term_name":"residues isobaric at 182.96-182.98 Da","termid":"MOD:00777"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"},{"rel_name":"is_a","termid":"MOD:00696"}],"interesting_parent_ids":["MOD:00696","MOD:00905"],"is_obsolete":false,"name":"S-phospho-L-cysteine","synonyms":[{"name":"(2R)-2-amino-3-(phosphonosulfanyl)propanoic acid","type":"exact"},{"name":"2-azanyl-3-(phosphonosulfanyl)propanoic acid","type":"exact"},{"name":"ACT_SITE Phosphocysteine intermediate","type":"exact"},{"name":"MOD_RES Phosphocysteine","type":"exact"},{"name":"PCys","type":"exact"},{"name":"Phospho","type":"related"},{"name":"Phosphorylation","type":"related"},{"name":"S-phospho-L-cysteine","type":"exact"},{"name":"S-phosphonocysteine","type":"exact"},{"name":"S-phosphorylated L-cysteine","type":"exact"},{"name":"S3-phosphocysteine","type":"exact"},{"name":"cysteine phosphate thioester","type":"exact"}],"termid":"MOD:00043"}


id: PR:Q9UTE7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A tRNA modification GTPase GTPBP3, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO00376","PANTHER:PTHR11649:SF14"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA modification GTPase mss1, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC222.05c","secondary_identifiers":["UniProtKB:Q9UTE7"],"synonyms":[{"name":"Spom972h-GTPBP3","type":"exact"}],"termid":"PR:Q9UTE7"}


id: SO:0002211
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A self replicating circular nucleic acid molecule that is distinct from a chromosome in the organism.","definition_xrefs":["SBOL:jb","PMID:21719542"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasmid","termid":"SO:0000155"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"circular_plasmid","synonyms":[{"name":"circular plasmid","type":"exact"}],"termid":"SO:0002211"}


id: GO:0044169
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding the host cell rough endoplasmic reticulum.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell endoplasmic reticulum membrane","termid":"GO:0044167"},{"relation_name":"part_of","term_name":"host cell rough endoplasmic reticulum","termid":"GO:0044168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell rough endoplasmic reticulum membrane","synonyms":[{"name":"host rough endoplasmic reticulum membrane","type":"exact"}],"termid":"GO:0044169"}


id: PBO:0061811
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OFD1 pseudogene 1 Y-linked","termid":"PBO:0061811"}


id: PBO:0086927
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pyruvate kinase; appears to be modulated by phosphorylation; transcription repressed by glucose, and Pyk2p may be active under low glycolytic flux; PYK2 has a paralog, CDC19, that arose from the whole genome duplication","termid":"PBO:0086927"}


id: PBO:0047393
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box protein 33","termid":"PBO:0047393"}


id: GO:1902998
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of neurofibrillary tangle assembly.","definition_xrefs":["GOC:sjp","GO_REF:0000058","GOC:TermGenie","PMID:15897157"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of inclusion body assembly","termid":"GO:0090261"},{"relation_name":"is_a","term_name":"regulation of neurofibrillary tangle assembly","termid":"GO:1902996"},{"relation_name":"positively_regulates","term_name":"neurofibrillary tangle assembly","termid":"GO:1902988"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"positive regulation of neurofibrillary tangle assembly","synonyms":[{"name":"activation of flame-shaped neurofibrillary tangle assembly","type":"narrow"},{"name":"activation of flame-shaped neurofibrillary tangle formation","type":"narrow"},{"name":"activation of neurofibrillary tangle assembly","type":"narrow"},{"name":"activation of neurofibrillary tangle formation","type":"narrow"},{"name":"activation of star-shaped neurofibrillary tangle assembly","type":"narrow"},{"name":"activation of star-shaped neurofibrillary tangle formation","type":"narrow"},{"name":"positive regulation of flame-shaped neurofibrillary tangle assembly","type":"narrow"},{"name":"positive regulation of flame-shaped neurofibrillary tangle formation","type":"narrow"},{"name":"positive regulation of neurofibrillary tangle formation","type":"exact"},{"name":"positive regulation of star-shaped neurofibrillary tangle assembly","type":"narrow"},{"name":"positive regulation of star-shaped neurofibrillary tangle formation","type":"narrow"},{"name":"up regulation of flame-shaped neurofibrillary tangle assembly","type":"narrow"},{"name":"up regulation of flame-shaped neurofibrillary tangle formation","type":"narrow"},{"name":"up regulation of neurofibrillary tangle assembly","type":"exact"},{"name":"up regulation of neurofibrillary tangle formation","type":"exact"},{"name":"up regulation of star-shaped neurofibrillary tangle assembly","type":"narrow"},{"name":"up regulation of star-shaped neurofibrillary tangle formation","type":"narrow"},{"name":"up-regulation of flame-shaped neurofibrillary tangle assembly","type":"narrow"},{"name":"up-regulation of flame-shaped neurofibrillary tangle formation","type":"narrow"},{"name":"up-regulation of neurofibrillary tangle assembly","type":"exact"},{"name":"up-regulation of neurofibrillary tangle formation","type":"exact"},{"name":"up-regulation of star-shaped neurofibrillary tangle assembly","type":"narrow"},{"name":"up-regulation of star-shaped neurofibrillary tangle formation","type":"narrow"},{"name":"upregulation of flame-shaped neurofibrillary tangle assembly","type":"narrow"},{"name":"upregulation of flame-shaped neurofibrillary tangle formation","type":"narrow"},{"name":"upregulation of neurofibrillary tangle assembly","type":"exact"},{"name":"upregulation of neurofibrillary tangle formation","type":"exact"},{"name":"upregulation of star-shaped neurofibrillary tangle assembly","type":"narrow"},{"name":"upregulation of star-shaped neurofibrillary tangle formation","type":"narrow"}],"termid":"GO:1902998"}


id: PBO:0071885
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS3A pseudogene 23","termid":"PBO:0071885"}


id: PBO:0039684
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amyloid beta precursor protein binding family B member 1 interacting protein","termid":"PBO:0039684"}


id: MONDO:0016341
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete lysosomal disease with restrictive cardiomyopathy (obsolete MONDO:0016341)","secondary_identifiers":["Orphanet:217638"],"termid":"MONDO:0016341","xrefs":{"Monarch":{"xref_id":"0016341"}}}


id: MONDO:0968989
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare form of limited dorsal myeloschisis (LDM), characterized by a non saccular cutaneous stigmata (midline skin abnormality classically dimple, pit or sometimes angioma), the stalk is attached to this cutaneous stigmata. Fibroneural stalk varies in thickness and complexity.","definition_xrefs":["Orphanet:645343"],"direct_ancestors":[{"relation_name":"is_a","term_name":"limited dorsal myeloschisis","termid":"MONDO:0958345"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"non-saccular limited dorsal myeloschisis","secondary_identifiers":["UMLS:C5816717","MEDGEN:1853129"],"termid":"MONDO:0968989","xrefs":{"Monarch":{"xref_id":"0968989"}}}


id: PBO:0061698
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear protein 2, transcriptional regulator","termid":"PBO:0061698"}


id: PBO:0090441
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"xylose and arabinose reductase","termid":"PBO:0090441"}


id: PBO:0078120
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha variable 8-2","termid":"PBO:0078120"}


id: FYPO:0001398
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which actin cortical patches are localized to only one end of a cell following cell division; patches may localize to either the old or the new end. A population of cells with this phenotype has a 1:1 mix of cells with actin patches at the old end and cells with patches at the new end.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monopolar actin cortical patch localization during vegetative growth","termid":"FYPO:0001019"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0004803"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0004803","FYPO:0000138","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"monopolar actin cortical patch localization to either end","synonyms":[{"name":"monopolar F-actin patch localization to either end","type":"exact"},{"name":"monopolar actin cortical patch localisation to either end","type":"exact"},{"name":"monopolar actin cortical patch localization to either end during mitotic cell cycle","type":"related"},{"name":"monopolar actin cortical patch localization to either end during vegetative growth","type":"exact"},{"name":"monopolar actin cortical patch location at either end","type":"related"},{"name":"monopolar actin patch localization to either end","type":"exact"}],"termid":"FYPO:0001398"}


id: PBO:0061375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleophosmin 1 pseudogene 35","termid":"PBO:0061375"}


id: GO:0004769
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a 3-oxo-delta(5)-steroid = a 3-oxo-delta(4)-steroid.","definition_xrefs":["RHEA:14709"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular oxidoreductase activity, transposing C=C bonds","termid":"GO:0016863"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016853","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"steroid Delta-isomerase activity","secondary_identifiers":["Reactome:R-HSA-193052","Reactome:R-HSA-195690","MetaCyc:STEROID-DELTA-ISOMERASE-RXN","Reactome:R-HSA-193073","Reactome:R-HSA-6807052","EC:5.3.3.1","Reactome:R-HSA-193961"],"synonyms":[{"name":"3-oxosteroid delta5-delta4-isomerase activity","type":"related"},{"name":"3-oxosteroid isomerase activity","type":"related"},{"name":"delta(5)-3-keto steroid isomerase activity","type":"related"},{"name":"delta(5)-3-ketosteroid isomerase activity","type":"related"},{"name":"delta(5)-3-oxosteroid isomerase activity","type":"related"},{"name":"delta(5)-steroid isomerase activity","type":"related"},{"name":"delta5(or delta4)-3-keto steroid isomerase activity","type":"related"},{"name":"delta5-3-keto steroid isomerase activity","type":"related"},{"name":"delta5-3-ketosteroid isomerase activity","type":"related"},{"name":"delta5-3-oxosteroid isomerase activity","type":"related"},{"name":"delta5-ketosteroid isomerase activity","type":"related"},{"name":"delta5-steroid isomerase activity","type":"related"},{"name":"hydroxysteroid isomerase activity","type":"related"},{"name":"steroid D-isomerase activity","type":"exact"},{"name":"steroid isomerase activity","type":"related"}],"termid":"GO:0004769"}


id: GO:1901587
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of acid-sensing ion channel activity.","definition_xrefs":["GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of acid-sensing ion channel activity (obsolete GO:1901587)","synonyms":[{"name":"activation of ASIC activity","type":"exact"},{"name":"activation of acid-sensing ion channel activity","type":"narrow"},{"name":"positive regulation of ASIC activity","type":"exact"},{"name":"up regulation of ASIC activity","type":"exact"},{"name":"up regulation of acid-sensing ion channel activity","type":"exact"},{"name":"up-regulation of ASIC activity","type":"exact"},{"name":"up-regulation of acid-sensing ion channel activity","type":"exact"},{"name":"upregulation of ASIC activity","type":"exact"},{"name":"upregulation of acid-sensing ion channel activity","type":"exact"}],"termid":"GO:1901587"}


id: PBO:0061296
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuropeptides B and W receptor 1","termid":"PBO:0061296"}


id: PBO:0109815
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"26S proteasome regulatory particle assembly factor Nas2","termid":"PBO:0109815"}


id: MONDO:1012588
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Oculocutaneous albinism that occurs in Japanese raccoon dog due to a mutation in the TYR gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oculocutaneous albinism, non-human animal","termid":"MONDO:1012579"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oculocutaneous albinism, TYR-related, Japanese raccoon dog","secondary_identifiers":["OMIA:000202-476259"],"synonyms":[{"name":"coat/skin colour, oculocutaneous albinism type I (OCA1), TYR-related in Nyctereutes procyonoides viverrinus (Japanese raccoon dog)","type":"exact"}],"termid":"MONDO:1012588","xrefs":{"Monarch":{"xref_id":"1012588"}}}


id: PBO:0065258
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich 23B","termid":"PBO:0065258"}


id: PBO:0029811
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_mixed_population_including_divided_and_undivided_germinated_spores_(obsolete_FYPO:0002426)","termid":"PBO:0029811"}


id: MONDO:0044783
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A well circumscribed, low grade neoplasm that arises from the breast. It is characterized by the presence of sheets of malignant epithelial cells that are supported by fibrovascular structures. When there is an invasive component present, it is usually a mucinous carcinoma.","definition_xrefs":["NCIT:C6870"],"direct_ancestors":[{"relation_name":"is_a","term_name":"breast papillary carcinoma","termid":"MONDO:0003532"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"solid papillary breast carcinoma","secondary_identifiers":["MEDGEN:236831","UMLS:C1336027","ONCOTREE:SPC"],"synonyms":[{"name":"solid Papillary breast carcinoma","type":"exact"},{"name":"solid Papillary carcinoma of the breast","type":"exact"}],"termid":"MONDO:0044783","xrefs":{"Monarch":{"xref_id":"0044783"}}}


id: PBO:0109642
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 66 member 1 like (pseudogene)","termid":"PBO:0109642"}


id: GO:0008097
data:
  {"annotated_genes":["SJAG_01568","SJAG_04066","SJAG_00067","SJAG_00323"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71490,72560,72697,89245],"is_not":false,"summary":null,"term":"GO:0008097"}]},"cv_name":"molecular_function","definition":"Binding to a 5S ribosomal RNA, the smallest RNA constituent of a ribosome.","definition_xrefs":["GOC:jl","ISBN:0321000382"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA binding","termid":"GO:0019843"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00067":null,"SJAG_00323":null,"SJAG_01568":null,"SJAG_04066":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003723","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"5S rRNA binding","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0008097","terms_by_termid":{"GO:0008097":null}}


id: FYPO:0008276
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which a polyphosphatase activity is absent.","definition_xrefs":["PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished catalytic activity","termid":"FYPO:0000664"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000661","FYPO:0000707","FYPO:0001985","FYPO:0000654"],"is_obsolete":false,"name":"abolished polyphosphatase activity","termid":"FYPO:0008276"}


id: PBO:0003446
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-directed RNA polymerase II complex subunit Rpb4","termid":"PBO:0003446"}


id: FYPO:0007846
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which the spindle is shorter than normal during anaphase of meiosis I.","definition_xrefs":["PMID:34346498","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"short meiotic spindle","termid":"FYPO:0000735"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000120"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002399"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0000120","FYPO:0002399","FYPO:0000054"],"is_obsolete":false,"name":"short meiotic spindle during anaphase I","synonyms":[{"name":"short meiosis I spindle during anaphase","type":"exact"},{"name":"short spindle during anaphase of meiosis I","type":"exact"},{"name":"short spindle during meiotic anaphase I","type":"exact"}],"termid":"FYPO:0007846"}


id: PBO:0084628
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Methylglyoxalase that converts methylglyoxal to D-lactate; involved in oxidative stress resistance, diauxic shift, and stationary phase survival; has similarity to E. coli Hsp31 and C. albicans Glx3p; member of the DJ-1/ThiJ/PfpI superfamily, which includes human DJ-1 involved in Parkinson's disease and cancer; exists as a dimer and contains a putative metal-binding site; protein abundance increases in response to DNA replication stress","termid":"PBO:0084628"}


id: GO:0001046
data:
  {"annotated_genes":["SJAG_02458","SJAG_00958","SJAG_00741","SJAG_00692","SJAG_00421","SJAG_00698","SJAG_02813"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71744],"is_not":false,"summary":null,"term":"GO:0001046"},{"annotations":[79710,76061],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0001164"},{"annotations":[94477,89608,95915,112265],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000979"}]},"cv_name":"molecular_function","definition":"Binding to a sequence of DNA that is part of a core promoter region. The core promoter is composed of the transcription start site and binding sites for the RNA polymerase and the basal transcription machinery. The transcribed region might be described as a gene, cistron, or operon.","definition_xrefs":["GOC:pg","GOC:txnOH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription cis-regulatory region binding","termid":"GO:0000976"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00421":null,"SJAG_00692":null,"SJAG_00698":null,"SJAG_00741":null,"SJAG_00958":null,"SJAG_02458":null,"SJAG_02813":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003677"},{"rel_name":"is_a","termid":"GO:0000976"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003677","GO:0005488","GO:0000976","GO:0003674"],"is_obsolete":false,"name":"core promoter sequence-specific DNA binding","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0001047","GO:0000985"],"synonyms":[{"name":"bacterial-type RNA polymerase core promoter sequence-specific DNA binding","type":"narrow"},{"name":"core promoter binding","type":"related"},{"name":"eubacterial-type RNA polymerase core promoter sequence-specific DNA binding","type":"narrow"}],"termid":"GO:0001046","terms_by_termid":{"GO:0000979":null,"GO:0001046":null,"GO:0001164":null}}


id: PBO:0071097
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 99","termid":"PBO:0071097"}


id: PBO:0111848
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cofilin/tropomyosin family","termid":"PBO:0111848"}


id: PBO:0110405
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PYGO2 and SHC1 antisense RNA 1","termid":"PBO:0110405"}


id: MONDO:0009849
data:
  {"annotated_genes":["SJAG_04865","SJAG_01474"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87081,87082],"is_not":false,"summary":null,"term":"MONDO:0009849"}]},"cv_name":"mondo","definition":"Hyperimmunoglobinemia D with periodic fever (HIDS) is a rare autoinflammatory disease characterized by periodic attacks of fever and a systemic inflammatory reaction (cervical lymphadenopathy, abdominal pain, vomiting, diarrhea, arthralgias and skin signs).","definition_xrefs":["Orphanet:343"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune system disorder","termid":"MONDO:0005046"},{"relation_name":"is_a","term_name":"mevalonate kinase deficiency","termid":"MONDO:0017708"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01474":null,"SJAG_04865":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0002525","MONDO:0005066","MONDO:0005046"],"is_obsolete":false,"name":"hyperimmunoglobulinemia D with periodic fever","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0081450","MEDGEN:140768","NANDO:1200866","GARD:2788","NANDO:2200436","OMIM:260920","UMLS:C0398691"],"synonyms":[{"name":"HIDS","type":"exact"},{"name":"hyper IgD syndrome","type":"related"},{"name":"hyper-IgD syndrome","type":"exact"},{"name":"hyperimmunoglobinemia D with recurrent fever","type":"exact"},{"name":"hyperimmunoglobulinemia D and periodic fever syndrome","type":"related"},{"name":"hyperimmunoglobulinemia D syndrome","type":"exact"},{"name":"partial mevalonate kinase deficiency","type":"exact"},{"name":"periodic fever Dutch type","type":"related"},{"name":"periodic fever, Dutch type","type":"related"}],"termid":"MONDO:0009849","terms_by_termid":{"MONDO:0009849":null},"xrefs":{"Monarch":{"xref_id":"0009849"}}}


id: GO:2000668
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of dendritic cell apoptotic process.","definition_xrefs":["GOC:mtg_apoptosis","GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of leukocyte apoptotic process","termid":"GO:2000106"},{"relation_name":"regulates","term_name":"dendritic cell apoptotic process","termid":"GO:0097048"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of dendritic cell apoptotic process","synonyms":[{"name":"regulation of dendritic cell apoptosis","type":"narrow"}],"termid":"GO:2000668"}


id: MONDO:0005585
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A form of hypertension that occurs as a direct result of chemotherapy treatment","definition_xrefs":["EFO:0005942"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hypertensive disorder","termid":"MONDO:0005044"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chemotherapy-induced hypertension","termid":"MONDO:0005585","xrefs":{"Monarch":{"xref_id":"0005585"}}}


id: MONDO:0007464
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Isolated distichiasis is a rare congenital eyelid anomaly characterized by an accessory row of eyelashes (that may be partial or complete) posterior to the normal row of cilia, at or close to the meibomian gland orifices, that is not associated with any other condition, and that may lead to ocular irritation and corneal damage if left untreated.","definition_xrefs":["Orphanet:99177"],"gene_count":0,"genotype_count":0,"name":"obsolete isolated distichiasis (obsolete MONDO:0007464)","secondary_identifiers":["ICD9:743.63","SCTID:95339000","OMIM:126300"],"synonyms":[{"name":"distichiasis","type":"related"},{"name":"eyelashes, two rows of","type":"related"}],"termid":"MONDO:0007464","xrefs":{"Monarch":{"xref_id":"0007464"}}}


id: GO:0090137
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The attachment of an epithelial cell to another epithelial cell via adhesion molecules that contributes to epithelium migration.","definition_xrefs":["GOC:tb","GOC:ascb_2009","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell-cell adhesion","termid":"GO:0090136"},{"relation_name":"part_of","term_name":"epithelium migration","termid":"GO:0090132"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"epithelial cell-cell adhesion involved in epithelium migration","termid":"GO:0090137"}


id: MONDO:0031004
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete genetic disorder of sex development of gynecological interest (obsolete MONDO:0031004)","secondary_identifiers":["Orphanet:325665"],"termid":"MONDO:0031004","xrefs":{"Monarch":{"xref_id":"0031004"}}}


id: MONDO:0018739
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare acquired neutropenia characterized by isolated neutropenia in a newborn due to maternal alloimmunization against human neutrophil antigens (HNA) inherited from the father and present on fetal neutrophils, and subsequent increased breakdown of the latter. The condition is self-limiting and resolves after several weeks. It usually presents with only mild bacterial infections or may even be asymptomatic, although severe forms with sepsis and fatal outcome have also been reported.","definition_xrefs":["Orphanet:464370"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neutropenia","termid":"MONDO:0001475"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"neonatal alloimmune neutropenia","secondary_identifiers":["MEDGEN:543869","UMLS:C0272176","ICD10CM:P61.5","SCTID:14333004","GARD:21929"],"termid":"MONDO:0018739","xrefs":{"Monarch":{"xref_id":"0018739"}}}


id: GO:0051596
data:
  {"annotated_genes":["SJAG_04726","SJAG_04674","SJAG_04404","SJAG_01596","SJAG_02106","SJAG_02960","SJAG_02988"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[103137,61074,74833,73297],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019243"},{"annotations":[59308,61073,105405],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061727"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of methylglyoxal, CH3-CO-CHO, the aldehyde of pyruvic acid.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methylglyoxal metabolic process","termid":"GO:0009438"},{"relation_name":"is_a","term_name":"ketone catabolic process","termid":"GO:0042182"},{"relation_name":"is_a","term_name":"aldehyde catabolic process","termid":"GO:0046185"}],"gene_count":7,"genes_by_uniquename":{"SJAG_01596":null,"SJAG_02106":null,"SJAG_02960":null,"SJAG_02988":null,"SJAG_04404":null,"SJAG_04674":null,"SJAG_04726":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"methylglyoxal catabolic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"secondary_identifiers":["MetaCyc:Methylglyoxal-Detoxification"],"synonyms":[{"name":"methylglyoxal breakdown","type":"exact"},{"name":"methylglyoxal catabolism","type":"exact"},{"name":"methylglyoxal degradation","type":"exact"}],"termid":"GO:0051596","terms_by_termid":{"GO:0019243":null,"GO:0061727":null}}


id: MONDO:0029811
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete laminopathy with peripheral neuropathy (obsolete MONDO:0029811)","secondary_identifiers":["Orphanet:300758"],"termid":"MONDO:0029811","xrefs":{"Monarch":{"xref_id":"0029811"}}}


id: PBO:0083317
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; overlaps ORF HSE1/YHL002W","termid":"PBO:0083317"}


id: MOD:00557
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Other","definition_xrefs":["PubMed:15541752","Unimod:206","PubMed:10825247"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Unimod","termid":"MOD:00003"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acrolein addition +56","synonyms":[{"name":"Acrolein addition +56","type":"related"},{"name":"Delta:H(4)C(3)O(1)","type":"related"}],"termid":"MOD:00557"}


id: PBO:0078914
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Gln (anticodon TTG) 3-3","termid":"PBO:0078914"}


id: GO:2000810
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of tight junction assembly.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell junction assembly","termid":"GO:1901888"},{"relation_name":"regulates","term_name":"bicellular tight junction assembly","termid":"GO:0070830"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"regulation of bicellular tight junction assembly","secondary_identifiers":["Reactome:R-HSA-8935964"],"synonyms":[{"name":"regulation of tight junction formation","type":"exact"}],"termid":"GO:2000810"}


id: PBO:0074852
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 41","termid":"PBO:0074852"}


id: MOD:00301
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-serine residue to O-(N-acetylglucosamine-1-phosphoryl)-L-serine.","definition_xrefs":["PubMed:8631906","Unimod:428","DeltaMass:0","PubMed:6438439","PubMed:6993483","RESID:AA0296"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-serine residue","termid":"MOD:00916"},{"relation_name":"is_a","term_name":"glycosylphosphorylated residue","termid":"MOD:01804"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"O-(N-acetylglucosamine-1-phosphoryl)-L-serine","synonyms":[{"name":"(2S)-2-amino-3-[([(2-acetamido-2-deoxy-alpha-D-glucopyranosyl)oxy][hydroxy]phosphoryl)oxy]propanoic acid","type":"exact"},{"name":"CARBOHYD O-linked (GalNAcP) serine","type":"exact"},{"name":"N-acetylglucosamine-1-phosphoryl","type":"related"},{"name":"O-(N-acetylglucosamine-1-phosphoryl)-L-serine","type":"exact"},{"name":"O-GlcNAc-1-phosphorylation (of Serine)","type":"exact"},{"name":"O-beta(N-acetyl-glucosamine-alpha1-phosphate)serine","type":"exact"},{"name":"O3-(N-acetylglucosamine-1-phosphoryl)-L-serine","type":"exact"},{"name":"O3-L-serine 2-(acetylamino)-2-deoxy-D-glucopyranose 1-phosphodiester","type":"exact"},{"name":"PhosphoHexNAc","type":"related"}],"termid":"MOD:00301"}


id: PBO:0001683
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"assembly at damage sites is facilitated by Rhp57 independently of Swi5","termid":"PBO:0001683"}


id: PBO:0047854
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, aphidicolin type, common, fra(1)(q25.1)","termid":"PBO:0047854"}


id: GO:0051680
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of 6-alpha-maltosylglucose, also known as isopanose.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligosaccharide biosynthetic process","termid":"GO:0009312"},{"relation_name":"is_a","term_name":"6-alpha-maltosylglucose metabolic process","termid":"GO:0051679"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"6-alpha-maltosylglucose biosynthetic process","synonyms":[{"name":"isopanose biosynthesis","type":"exact"},{"name":"isopanose biosynthetic process","type":"exact"}],"termid":"GO:0051680"}


id: PBO:0080789
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"XRCC1 N-terminal domain containing 1, N-terminal like","termid":"PBO:0080789"}


id: PATO:0002145
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A radiopacity that is relatively low.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"radiopacity","termid":"PATO:0002136"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased radiopacity","termid":"PATO:0002145"}


id: PBO:0043883
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cellular repressor of E1A stimulated genes 2","termid":"PBO:0043883"}


id: PBO:0084715
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial inner membrane m-AAA protease component; mediates degradation of misfolded or unassembled proteins; also required for correct assembly of mitochondrial enzyme complexes; involved in cytoplasmic mRNA translation and aging; expression of human homolog AFG3L2 can complement yeast yta12 afg3 double mutant","termid":"PBO:0084715"}


id: GO:1904730
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of intestinal lipid absorption.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:18768481"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of intestinal absorption","termid":"GO:1904479"},{"relation_name":"is_a","term_name":"regulation of intestinal lipid absorption","termid":"GO:1904729"},{"relation_name":"negatively_regulates","term_name":"intestinal lipid absorption","termid":"GO:0098856"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of intestinal lipid absorption","synonyms":[{"name":"down regulation of intestinal lipid absorption","type":"exact"},{"name":"down-regulation of intestinal lipid absorption","type":"exact"},{"name":"downregulation of intestinal lipid absorption","type":"exact"},{"name":"inhibition of intestinal lipid absorption","type":"narrow"}],"termid":"GO:1904730"}


id: GO:0019649
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The pathways in which formaldehyde is processed and used as a carbon source for the cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"formaldehyde metabolic process","termid":"GO:0046292"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"formaldehyde assimilation","termid":"GO:0019649"}


id: PBO:0028356
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_phosphatase_activity","termid":"PBO:0028356"}


id: GO:0061217
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of mesonephros development. Mesonephros development is the process whose specific outcome is the progression of the mesonephros over time, from its formation to the mature structure. The mesonephros is an endocrine and metabolic organ that filters the blood and excretes the end products of body metabolism in the form of urine.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of kidney development","termid":"GO:0090183"},{"relation_name":"regulates","term_name":"mesonephros development","termid":"GO:0001823"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of mesonephros development","termid":"GO:0061217"}


id: GO:0048506
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of a change in identity of a meristem at a characteristic predetermined time point.","definition_xrefs":["GOC:dph","GOC:jid","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of development, heterochronic","termid":"GO:0040034"},{"relation_name":"is_a","term_name":"regulation of meristem development","termid":"GO:0048509"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of timing of meristematic phase transition","termid":"GO:0048506"}


id: PBO:0002859
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin I light chain Cam2","termid":"PBO:0002859"}


id: PBO:0084849
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial ribosomal protein of the large subunit; involved together with Mrp7p in assembly of cytochrome c oxidase","termid":"PBO:0084849"}


id: PBO:0050325
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 27","termid":"PBO:0050325"}


id: GO:0031770
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a growth hormone-releasing hormone receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuropeptide receptor binding","termid":"GO:0071855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"growth hormone-releasing hormone receptor binding","synonyms":[{"name":"growth hormone-releasing hormone receptor ligand","type":"narrow"}],"termid":"GO:0031770"}


id: PBO:0041398
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 6 open reading frame 47","termid":"PBO:0041398"}


id: MONDO:0005371
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A cognitive disorder a disturbance in which the person's mood is hypothesized to be the main underlying feature.","definition_xrefs":["Wikipedia:Mood_disorder"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mental disorder","termid":"MONDO:0005084"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mood disorder","secondary_identifiers":["ICD10CM:F30-F39","UMLS:C0525045","NCIT:C92200","EFO:0004247","MEDGEN:99866","MESH:D019964","SCTID:46206005","ICD9:296.99","DOID:3324"],"synonyms":[{"name":"episodic mood disorder","type":"narrow"}],"termid":"MONDO:0005371","xrefs":{"Monarch":{"xref_id":"0005371"}}}


id: PBO:0064276
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pleckstrin homology, MyTH4 and FERM domain containing H2","termid":"PBO:0064276"}


id: GO:0015294
data:
  {"annotated_genes":["SJAG_01406","SJAG_02780","SJAG_04714","SJAG_03606","SJAG_04068","SJAG_03608","SJAG_03820","SJAG_04673","SJAG_03595","SJAG_04506","SJAG_02958","SJAG_02779","SJAG_03960","SJAG_04905","SJAG_03401","SJAG_00057"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71298,73578,76706,75172,73421,73558],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005351"},{"annotations":[117604],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005358"},{"annotations":[101017],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034216"},{"annotations":[101998],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015366"},{"annotations":[96101],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005364"},{"annotations":[73395,72458],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005366"},{"annotations":[73822],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015379"},{"annotations":[72166,79577],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015295"},{"annotations":[102001],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097434"},{"annotations":[75917],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008506"},{"annotations":[95872],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015505"}]},"cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + cation(out) = solute(in) + cation(in).","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoatomic cation transmembrane transporter activity","termid":"GO:0008324"},{"relation_name":"is_a","term_name":"symporter activity","termid":"GO:0015293"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00057":null,"SJAG_01406":null,"SJAG_02779":null,"SJAG_02780":null,"SJAG_02958":null,"SJAG_03401":null,"SJAG_03595":null,"SJAG_03606":null,"SJAG_03608":null,"SJAG_03820":null,"SJAG_03960":null,"SJAG_04068":null,"SJAG_04506":null,"SJAG_04673":null,"SJAG_04714":null,"SJAG_04905":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"solute:monoatomic cation symporter activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"solute:cation symporter activity","type":"broad"}],"termid":"GO:0015294","terms_by_termid":{"GO:0005351":null,"GO:0005358":null,"GO:0005364":null,"GO:0005366":null,"GO:0008506":null,"GO:0015295":null,"GO:0015366":null,"GO:0015379":null,"GO:0015505":null,"GO:0034216":null,"GO:0097434":null}}


id: MONDO:0007072
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"ADULT (Acro-dermo-ungual-lacrimal-tooth) syndrome is a rare ectodermal dysplasia syndrome characterized by ectrodactyly, syndactyly, mammary hypoplasia, and excessive freckling as well as other typical ectodermal defects such as hypodontia, lacrimal duct anomalies, hypotrichosis, and onychodysplasia.","definition_xrefs":["Orphanet:978"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"dysostosis","termid":"MONDO:0018234"},{"relation_name":"is_a","term_name":"congenital limb malformation","termid":"MONDO:0019054"},{"relation_name":"is_a","term_name":"ectodermal dysplasia syndrome","termid":"MONDO:0019287"},{"relation_name":"is_a","term_name":"TP63-related ectodermal dysplasia spectrum with limb and orofacial malformations","termid":"MONDO:1040001"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"},{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0005497","MONDO:0000426"],"is_obsolete":false,"name":"ADULT syndrome","secondary_identifiers":["icd11.foundation:1445741645","OMIM:103285","MESH:C538052","SCTID:720464003","UMLS:C1863204","MEDGEN:400232","GARD:384","DOID:0050601"],"synonyms":[{"name":"ADULT syndrome","type":"exact"},{"name":"acro dermato ungual lacrimal tooth syndrome","type":"related"},{"name":"acro-dermato-ungual-lacrimal-Tooth syndrome","type":"related"},{"name":"acro-dermato-ungual-lacrimal-tooth syndrome","type":"exact"},{"name":"acrodermatounguallacrimaltooth syndrome","type":"exact"},{"name":"pigment anomaly-ectrodactyly-hypodontia syndrome","type":"exact"}],"termid":"MONDO:0007072","xrefs":{"Monarch":{"xref_id":"0007072"}}}


id: PBO:0079773
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UDP-glucose ceramide glucosyltransferase","termid":"PBO:0079773"}


id: GO:0047243
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a flavanone + UDP-D-glucose = a flavanone 7-O-beta-D-glucoside + UDP.","definition_xrefs":["EC:2.4.1.185","MetaCyc:2.4.1.185-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glucosyltransferase activity","termid":"GO:0035251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016757","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"flavanone 7-O-beta-glucosyltransferase activity","synonyms":[{"name":"UDP-glucose:flavanone 7-O-beta-D-glucosyltransferase activity","type":"related"},{"name":"UDPglucose:flavanone 7-O-beta-D-glucosyltransferase activity","type":"related"},{"name":"hesperetin 7-O-glucosyl-transferase activity","type":"related"},{"name":"naringenin 7-O-glucosyltransferase activity","type":"related"},{"name":"uridine diphosphoglucose-flavanone 7-O-glucosyltransferase activity","type":"related"}],"termid":"GO:0047243"}


id: PBO:0047524
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"free fatty acid receptor 4","termid":"PBO:0047524"}


id: GO:0047591
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-hydroxypentanoate + acetyl-CoA = 5-hydroxy-pentanoyl-CoA + acetate.","definition_xrefs":["RHEA:23496","EC:2.8.3.14"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CoA-transferase activity","termid":"GO:0008410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016782"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0016782"],"is_obsolete":false,"name":"5-hydroxypentanoate CoA-transferase activity","secondary_identifiers":["KEGG_REACTION:R04057","MetaCyc:5-HYDROXYPENTANOATE-COA-TRANSFERASE-RXN"],"synonyms":[{"name":"5-hydroxyvalerate CoA-transferase activity","type":"related"},{"name":"5-hydroxyvalerate coenzyme A transferase activity","type":"related"},{"name":"acetyl-CoA:5-hydroxypentanoate CoA-transferase activity","type":"related"}],"termid":"GO:0047591"}


id: PBO:0027654
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-cut_during_cellular_response_to_ionizing_radiation_during_mitotic_S_phase","termid":"PBO:0027654"}


id: PBO:0045163
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynein axonemal intermediate chain 3","termid":"PBO:0045163"}


id: MOD:01176
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cross-links an L-lysine residue and an L-lysine residue converted to allysine with a carbon-nitrogen bond to form L-dehydrolysinonorleucine.","definition_xrefs":["PubMed:16929109","RESID:AA0430"],"direct_ancestors":[{"relation_name":"is_a","term_name":"uncategorized crosslinked residues","termid":"MOD:00692"},{"relation_name":"is_a","term_name":"crosslinked L-lysine residue","termid":"MOD:02051"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-dehydrolysinonorleucine","synonyms":[{"name":"(2S)-2-amino-6-([(5S)-5-amino-5-carboxypentylidene]amino)hexanoic acid","type":"exact"},{"name":"6-(N6-L-didehydrolysino)-L-norleucine","type":"exact"},{"name":"CROSSLNK Dehydrolysinonorleucine (Lys-Lys)","type":"exact"},{"name":"L-dehydrolysinonorleucine","type":"exact"},{"name":"N6-[(5S)-5-amino-5-carboxypentylidene]-L-lysine","type":"exact"},{"name":"XLNK6NleN6Lys","type":"exact"},{"name":"dehydrolysinorleucine [misspelling]","type":"exact"},{"name":"dehydrolysylnorleucine","type":"exact"},{"name":"didehydrolysinonorleucine","type":"exact"}],"termid":"MOD:01176"}


id: PBO:0040364
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase peripheral stalk-membrane subunit b pseudogene 1","termid":"PBO:0040364"}


id: MONDO:0018914
data:
  {"annotated_genes":["SJAG_03469","SJAG_00155","SJAG_01202"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85627],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014027"},{"annotations":[86773,86774],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014384"}]},"cv_name":"mondo","definition":"Hypotrichosis simplex (HS) or hereditary hypotrichosis simplex (HHS) is characterized by reduced pilosity over the scalp and body (with sparse, thin, and short hair) in the absence of other anomalies.","definition_xrefs":["Orphanet:55654"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alopecia","termid":"MONDO:0004907"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00155":null,"SJAG_01202":null,"SJAG_03469":null},"genotype_count":0,"is_obsolete":false,"name":"hypotrichosis simplex","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:344257","MESH:C537160","SCTID:723362004","UMLS:C1854310","GARD:9170"],"synonyms":[{"name":"hereditary hypotrichosis simplex","type":"narrow"}],"termid":"MONDO:0018914","terms_by_termid":{"MONDO:0014027":null,"MONDO:0014384":null},"xrefs":{"Monarch":{"xref_id":"0018914"}}}


id: GO:0098965
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The portion of the extracellular matrix that lies within the synaptic cleft.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"specialized extracellular matrix","termid":"GO:0140047"},{"relation_name":"part_of","term_name":"synapse-associated extracellular matrix","termid":"GO:0099535"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"extracellular matrix of synaptic cleft","synonyms":[{"name":"ECM of synaptic cleft","type":"exact"},{"name":"synaptic cleft ECM","type":"exact"}],"termid":"GO:0098965"}


id: PATO:0001597
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An oriented quality inhering in a bearer by virtue of the bearer's being turned outward in placement.","definition_xrefs":["thefreedictionary:thefreedictionary"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oriented","termid":"PATO:0000614"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"everted","termid":"PATO:0001597"}


id: MONDO:0013553
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any immunodeficiency-centromeric instability-facial anomalies syndrome in which the cause of the disease is a mutation in the ZBTB24 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immunodeficiency-centromeric instability-facial anomalies syndrome","termid":"MONDO:0000133"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019303"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0019303","MONDO:0006025"],"is_obsolete":false,"name":"immunodeficiency-centromeric instability-facial anomalies syndrome 2","secondary_identifiers":["UMLS:C3279748","DOID:0090009","GARD:15751","MEDGEN:481378","OMIM:614069"],"synonyms":[{"name":"ICF syndrome 2","type":"exact"},{"name":"ICF2","type":"related"},{"name":"ZBTB24 immunodeficiency-centromeric instability-facial anomalies syndrome","type":"exact"},{"name":"immunodeficiency-centromeric instability-Facial anomalies syndrome type 2","type":"exact"},{"name":"immunodeficiency-centromeric instability-facial anomalies syndrome 2","type":"exact"},{"name":"immunodeficiency-centromeric instability-facial anomalies syndrome caused by mutation in ZBTB24","type":"exact"},{"name":"immunodeficiency-centromeric instability-facial anomalies syndrome type 2","type":"exact"}],"termid":"MONDO:0013553","xrefs":{"Monarch":{"xref_id":"0013553"}}}


id: GO:0003940
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of alpha-L-iduronosidic linkages in dermatan sulfate. Can also hydrolyze alpha-L-iduronosidic linkages in heparan sulfate.","definition_xrefs":["EC:3.2.1.76","PMID:35011691"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016787","GO:0016798"],"is_obsolete":false,"name":"L-iduronidase activity","secondary_identifiers":["Reactome:R-HSA-1793186","Reactome:R-HSA-9036037","Reactome:R-HSA-2206299","Reactome:R-HSA-9036041","Reactome:R-HSA-1678716","Reactome:R-HSA-2090037","MetaCyc:3.2.1.76-RXN"],"synonyms":[{"name":"alpha-L-iduronidase activity","type":"related"},{"name":"glycosaminoglycan alpha-L-iduronohydrolase activity","type":"related"}],"termid":"GO:0003940"}


id: PBO:0045386
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dipeptidyl peptidase 8","termid":"PBO:0045386"}


id: GO:0033501
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A homeostatic process involved in the maintenance of an internal steady state of galactose within an organism or cell.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete galactose homeostasis (obsolete GO:0033501)","termid":"GO:0033501"}


id: PBO:0016084
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gene structurte updated","termid":"PBO:0016084"}


id: PBO:0034120
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-luminal_space_of","termid":"PBO:0034120"}


id: GO:0034155
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of toll-like receptor 7 signaling pathway.","definition_xrefs":["PMID:16551253","PMID:17328678","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytoplasmic pattern recognition receptor signaling pathway","termid":"GO:0039531"},{"relation_name":"regulates","term_name":"toll-like receptor 7 signaling pathway","termid":"GO:0034154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of toll-like receptor 7 signaling pathway","synonyms":[{"name":"regulation of TLR7 signaling pathway","type":"exact"},{"name":"regulation of toll-like receptor 7 signalling pathway","type":"exact"}],"termid":"GO:0034155"}


id: PR:Q9USP8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02477","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"isocitrate dehydrogenase [NAD] subunit 2, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC902.05c","secondary_identifiers":["UniProtKB:Q9USP8"],"synonyms":[{"name":"NAD(+)-specific ICDH (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-IDH3A","type":"exact"},{"name":"isocitric dehydrogenase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9USP8"}


id: PBO:0112878
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gocam","termid":"PBO:0112878"}


id: GO:0032290
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the wraps of cell membrane that constitute myelin are laid down around an axon by Schwann cells in the peripheral nervous system.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myelin assembly","termid":"GO:0032288"},{"relation_name":"part_of","term_name":"myelination in peripheral nervous system","termid":"GO:0022011"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"peripheral nervous system myelin formation","synonyms":[{"name":"myelin formation in peripheral nervous system","type":"exact"},{"name":"peripheral nervous system myelin sheath formation","type":"exact"}],"termid":"GO:0032290"}


id: GO:0052421
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways performed by an organism involving xylan within a second organism, where the two organisms are in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete metabolism by organism of xylan in other organism involved in symbiotic interaction (obsolete GO:0052421)","synonyms":[{"name":"metabolism by organism of xylan in other organism during symbiotic interaction","type":"related"}],"termid":"GO:0052421"}


id: PBO:0055161
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2580","termid":"PBO:0055161"}


id: PBO:0062865
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OTU deubiquitinase 3","termid":"PBO:0062865"}


id: GO:1901676
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of histone H3-K27 acetylation.","definition_xrefs":["GOC:BHF","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of histone H3-K27 acetylation (obsolete GO:1901676)","synonyms":[{"name":"activation of histone H3 acetylation at K27","type":"exact"},{"name":"activation of histone H3-K27 acetylation","type":"narrow"},{"name":"activation of histone H3K27 acetylation","type":"exact"},{"name":"positive regulation of histone H3 acetylation at K27","type":"exact"},{"name":"positive regulation of histone H3K27 acetylation","type":"exact"},{"name":"up regulation of histone H3 acetylation at K27","type":"exact"},{"name":"up regulation of histone H3-K27 acetylation","type":"exact"},{"name":"up regulation of histone H3K27 acetylation","type":"exact"},{"name":"up-regulation of histone H3 acetylation at K27","type":"exact"},{"name":"up-regulation of histone H3-K27 acetylation","type":"exact"},{"name":"up-regulation of histone H3K27 acetylation","type":"exact"},{"name":"upregulation of histone H3 acetylation at K27","type":"exact"},{"name":"upregulation of histone H3-K27 acetylation","type":"exact"},{"name":"upregulation of histone H3K27 acetylation","type":"exact"}],"termid":"GO:1901676"}


id: PBO:0005902
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F0-ATPase subunit 9 (predicted)","termid":"PBO:0005902"}


id: PBO:0114274
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin family protein (FoldSeek), possible PF15874 family (Pfam-N)","termid":"PBO:0114274"}


id: MOD:00988
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes a hydrogen atom of an L-tyrosine residue with a bromine atom.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"brominated residue","termid":"MOD:00754"},{"relation_name":"is_a","term_name":"halogenated tyrosine","termid":"MOD:00985"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"brominated tyrosine","synonyms":[{"name":"BrTyr","type":"exact"}],"termid":"MOD:00988"}


id: MONDO:0011930
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any epilepsy, familial adult myoclonic in which the cause of the disease is a mutation in the ADRA2B gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"benign adult familial myoclonic epilepsy","termid":"MONDO:0019448"},{"relation_name":"is_a","term_name":"epilepsy, familial adult myoclonic","termid":"MONDO:0000160"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"epilepsy, familial adult myoclonic, 2","secondary_identifiers":["GARD:18083","OMIM:607876","MEDGEN:375031","MESH:C564313","UMLS:C1842852","DOID:0111692"],"synonyms":[{"name":"ADRA2B epilepsy, familial adult myoclonic","type":"exact"},{"name":"FAME2","type":"related"},{"name":"benign adult familial myoclonic epilepsy 2","type":"related"},{"name":"cortical myoclonic tremor with epilepsy, familial, 2","type":"related"},{"name":"cortical myoclonus and epilepsy, autosomal dominant","type":"related"},{"name":"epilepsy, familial ADULT myoclonic, 2","type":"related"},{"name":"epilepsy, familial adult myoclonic caused by mutation in ADRA2B","type":"exact"},{"name":"epilepsy, familial adult myoclonic, 2","type":"exact"},{"name":"epilepsy, familial adult myoclonic, type 2","type":"exact"}],"termid":"MONDO:0011930","xrefs":{"Monarch":{"xref_id":"0011930"}}}


id: MONDO:0009600
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metaphyseal dysplasia, anetoderma, and optic atrophy","secondary_identifiers":["UMLS:C1855174","MEDGEN:381576","OMIM:250450","MESH:C565395"],"synonyms":[{"name":"metaphyseal dysplasia, anetoderma, and optic atrophy","type":"exact"}],"termid":"MONDO:0009600","xrefs":{"Monarch":{"xref_id":"0009600"}}}


id: PBO:0077557
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TMEM263 divergent transcript","termid":"PBO:0077557"}


id: GO:1903409
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of reactive oxygen species, any molecules or ions formed by the incomplete one-electron reduction of oxygen.","definition_xrefs":["PMID:24252804","GOC:TermGenie","GOC:bf","GOC:PARL","GO_REF:0000068"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biosynthetic process","termid":"GO:0009058"},{"relation_name":"is_a","term_name":"reactive oxygen species metabolic process","termid":"GO:0072593"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"reactive oxygen species biosynthetic process","synonyms":[{"name":"ROS formation","type":"related"},{"name":"ROS generation","type":"related"},{"name":"reactive oxygen species anabolism","type":"exact"},{"name":"reactive oxygen species biosynthesis","type":"exact"},{"name":"reactive oxygen species formation","type":"exact"},{"name":"reactive oxygen species generation","type":"related"},{"name":"reactive oxygen species synthesis","type":"exact"}],"termid":"GO:1903409"}


id: PBO:0029498
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-viable_curved_elongated_vegetative_cell_population_(obsolete_FYPO:0002217)","termid":"PBO:0029498"}


id: PBO:0048913
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgin A8 family member H","termid":"PBO:0048913"}


id: GO:1900585
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving arugosin.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secondary metabolic process","termid":"GO:0019748"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"arugosin metabolic process","synonyms":[{"name":"arugosin metabolism","type":"exact"}],"termid":"GO:1900585"}


id: GO:0060546
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of a necroptotic process, a necrotic cell death process that results from the activation of endogenous cellular processes, such as signaling involving death domain receptors or Toll-like receptors.","definition_xrefs":["GOC:BHF","GOC:dph","GOC:mtg_apoptosis","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of necroptotic process","termid":"GO:0060544"},{"relation_name":"is_a","term_name":"negative regulation of programmed necrotic cell death","termid":"GO:0062099"},{"relation_name":"negatively_regulates","term_name":"necroptotic process","termid":"GO:0070266"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of necroptotic process","synonyms":[{"name":"negative regulation of necroptosis","type":"narrow"}],"termid":"GO:0060546"}


id: GO:0141032
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an organism effects a change that impairs the structure or function of the host actin cytoskeleton by reorganizing the actin filaments, in a way that keeps the total filementous actin remains approximately constant. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:31130928","PMID:22212282"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host actin cytoskeleton","termid":"GO:0141027"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated perturbation of host actin cytoskeleton via actin filament reorganization","synonyms":[{"name":"perturbation by symbiont of host actin cytoskeleton via actin filament rearrangement","type":"exact"},{"name":"perturbation by symbiont of host actin cytoskeleton via actin filament reorganization","type":"exact"}],"termid":"GO:0141032"}


id: PBO:0066547
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulator of G protein signaling 10","termid":"PBO:0066547"}


id: GO:0030715
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The increase in volume of an oocyte during the growth phase of the egg chamber, once the egg chamber has left the germarium. An example of this process is found in Drosophila melanogaster.","definition_xrefs":["GOC:mtg_sensu","ISBN:0879694238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oocyte growth","termid":"GO:0001555"},{"relation_name":"part_of","term_name":"growth of a germarium-derived egg chamber","termid":"GO:0007295"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"oocyte growth in germarium-derived egg chamber","termid":"GO:0030715"}


id: GO:1904693
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process by which a midbrain is generated and organized.","definition_xrefs":["GO_REF:0000083","GOC:TermGenie","PMID:21347250","GOC:bf","GOC:PARL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"},{"relation_name":"part_of","term_name":"midbrain development","termid":"GO:0030901"},{"relation_name":"part_of","term_name":"brain morphogenesis","termid":"GO:0048854"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"midbrain morphogenesis","synonyms":[{"name":"MB morphogenesis","type":"broad"},{"name":"mesencephalon morphogenesis","type":"related"}],"termid":"GO:1904693"}


id: PBO:0029581
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cellular_pigment_accumulation_during_cellular_response_to_caffeine","termid":"PBO:0029581"}


id: MONDO:0002473
data:
  {"annotated_genes":["SJAG_00394","SJAG_03280"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85797],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010916"},{"annotations":[86093],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0031062"}]},"cv_name":"mondo","definition":"A congenital or acquired kidney disorder characterized by the presence of renal cysts.","definition_xrefs":["NCIT:C34750"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kidney disorder","termid":"MONDO:0005240"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00394":null,"SJAG_03280":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"cystic kidney disease","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["EFO:0008615","NANDO:2200172","DOID:2975","SCTID:722223000","ICD10CM:Q61","UMLS:C3887499","MESH:D052177","MEDGEN:854361"],"synonyms":[{"name":"cystic renal disease","type":"exact"},{"name":"kidney cyst","type":"exact"},{"name":"renal cyst","type":"exact"}],"termid":"MONDO:0002473","terms_by_termid":{"MONDO:0010916":null,"MONDO:0031062":null},"xrefs":{"Monarch":{"xref_id":"0002473"}}}


id: MONDO:1012267
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"androgen insensitivity syndrome, non-human animal","termid":"MONDO:1011919"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"androgen insensitivity syndrome, pig","secondary_identifiers":["OMIA:000991-9823"],"synonyms":[{"name":"AIS, pig","type":"exact"}],"termid":"MONDO:1012267","xrefs":{"Monarch":{"xref_id":"1012267"}}}


id: PBO:0067567
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 720, pseudogene","termid":"PBO:0067567"}


id: GO:0006903
data:
  {"annotated_genes":["SJAG_03864","SJAG_03938","SJAG_04391","SJAG_02320","SJAG_01925","SJAG_04960","SJAG_03005","SJAG_03268","SJAG_04044","SJAG_02166","SJAG_03357"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71673,118135],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0048205"},{"annotations":[118837],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0099022"},{"annotations":[114543,102262,60353,91073,88946,99885,66328,118120],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0090522"}]},"cv_name":"biological_process","definition":"The process in which vesicles are directed to specific destination membranes. Targeting involves coordinated interactions among cytoskeletal elements (microtubules or actin filaments), motor proteins, molecules at the vesicle membrane and target membrane surfaces, and vesicle cargo.","definition_xrefs":["GOC:mah","PMID:17335816"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular process","termid":"GO:0009987"},{"relation_name":"part_of","term_name":"vesicle-mediated transport","termid":"GO:0016192"},{"relation_name":"part_of","term_name":"establishment of vesicle localization","termid":"GO:0051650"}],"gene_count":11,"genes_by_uniquename":{"SJAG_01925":null,"SJAG_02166":null,"SJAG_02320":null,"SJAG_03005":null,"SJAG_03268":null,"SJAG_03357":null,"SJAG_03864":null,"SJAG_03938":null,"SJAG_04044":null,"SJAG_04391":null,"SJAG_04960":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0006810","GO:0016192","GO:0008150"],"is_obsolete":false,"name":"vesicle targeting","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0006903","terms_by_termid":{"GO:0048205":null,"GO:0090522":null,"GO:0099022":null}}


id: PBO:0058820
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 7977","termid":"PBO:0058820"}


id: GO:0102993
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a (9Z,12Z)-octadecadienoyl-containing glycerolipid + 2 H+ + O2 + 2 reduced [2Fe-2S]-[ferredoxin] = (9Z,12Z,15Z)-octadecatrienoyl-containing glycerolipid + 2 H2O + 2 oxidized [2Fe-2S]-[ferredoxin]. Also converts a (7Z,10Z)-hexadecadienoyl-containing glycerolipid into a (7Z,10Z,13Z)-hexadecatrienoyl-containing glycerolipid.","definition_xrefs":["EC:1.14.19.35"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water","termid":"GO:0016717"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"sn-2 acyl-lipid omega-3 desaturase (ferredoxin) activity","secondary_identifiers":["MetaCyc:RXN-9667"],"synonyms":[{"name":"linolenate delta15 desaturase activity","type":"exact"}],"termid":"GO:0102993"}


id: PR:O94514
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A nucleolar protein 56 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR10894:SF0","OMA:SCHPO02646","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleolar protein 56 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC646.10c","secondary_identifiers":["UniProtKB:O94514"],"synonyms":[{"name":"Spom972h-NOP56","type":"exact"},{"name":"ribosome biosynthesis protein sik1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94514"}


id: MONDO:0008724
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A type of arthrogryposis characterized by congenital cleft palate, microcephaly, craniostenosis and arthrogryposis (limitation of extension of elbows, flexed adducted thumbs, camptodactyly and clubfeet). Additional features include facial dysmorphism (\\\"myopathic\\\" stiff face, antimongoloid slanting, external ophthalmoplegia, telecanthus, low-set large malrotated ears, open mouth, mierogenia and high arched palate). Velopharyngeal insufficiency with difficulties in swallowing, increased secretion of the nose and throat, prominent occiput, generalized muscular hypotonia with mild cyanosis and no spontaneous movements, seizures, torticollis, areflexia, intellectual disability, hypertrichosis of the lower extremities, and scleredema (in the first days of life) are also observed. The disease often leads to early death. Transmission is autosomal recessive. No new cases of adducted thumbs-arthrogryposis, Christian type have been described since 1983.","definition_xrefs":["Orphanet:2952"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete syndrome or malformation associated with head and neck malformations (obsolete MONDO:0015501)","termid":"MONDO:0015501"},{"relation_name":"is_a","term_name":"arthrogryposis multiplex congenita","termid":"MONDO:0015168"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adducted thumbs-arthrogryposis syndrome, Christian type","secondary_identifiers":["UMLS:C4304055","MEDGEN:929724","OMIM:201550","GARD:10277"],"synonyms":[{"name":"adducted thumbs syndrome","type":"related"}],"termid":"MONDO:0008724","xrefs":{"Monarch":{"xref_id":"0008724"}}}


id: PBO:0069183
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 437, pseudogene","termid":"PBO:0069183"}


id: MONDO:0009759
data:
  {"annotated_genes":["SJAG_04699","SJAG_01082"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87112,87113],"is_not":false,"summary":null,"term":"MONDO:0009759"}]},"cv_name":"mondo","definition":"Any mosaic variegated aneuploidy syndrome in which the cause of the disease is a mutation in the BUB1B gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mosaic variegated aneuploidy syndrome","termid":"MONDO:0000141"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01082":null,"SJAG_04699":null},"genotype_count":0,"is_obsolete":false,"name":"mosaic variegated aneuploidy syndrome 1","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:257300","MEDGEN:338026","DOID:0080141","NCIT:C128192","UMLS:C1850343"],"synonyms":[{"name":"BUB1B mosaic variegated aneuploidy syndrome","type":"exact"},{"name":"MOSAIC variegated aneuploidy syndrome 1","type":"related"},{"name":"MVA syndrome","type":"related"},{"name":"MVA1","type":"related"},{"name":"Mosaic variegated aneuploidy syndrome type 1","type":"exact"},{"name":"mosaic variegated aneuploidy syndrome 1","type":"exact"},{"name":"mosaic variegated aneuploidy syndrome caused by mutation in BUB1B","type":"exact"},{"name":"mosaic variegated aneuploidy syndrome type 1","type":"exact"}],"termid":"MONDO:0009759","terms_by_termid":{"MONDO:0009759":null},"xrefs":{"Monarch":{"xref_id":"0009759"}}}


id: GO:0047867
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (R)-3,3-dimethylmalate + NAD+ = 3-methyl-2-oxobutanoate + CO2 + NADH.","definition_xrefs":["RHEA:13321","EC:1.1.1.84"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"dimethylmalate dehydrogenase activity","secondary_identifiers":["MetaCyc:DIMETHYLMALATE-DEHYDROGENASE-RXN","KEGG_REACTION:R01211"],"synonyms":[{"name":"(R)-3,3-dimethylmalate:NAD+ oxidoreductase (decarboxylating)","type":"related"},{"name":"beta,beta-dimethylmalate dehydrogenase activity","type":"related"}],"termid":"GO:0047867"}


id: MOD:00424
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to S-pyridylethyl-L-cysteine.","definition_xrefs":["OMSSA:112","DeltaMass:253","PubMed:11760118","PubMed:8297018","Unimod:31#C","PubMed:626389","PubMed:8783016"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"S-pyridylethyl-L-cysteine","synonyms":[{"name":"PECys","type":"exact"},{"name":"Pyridylethyl","type":"related"},{"name":"Pyridylethyl Cystenyl","type":"exact"},{"name":"S-pyridinylethyl-L-cysteine","type":"exact"},{"name":"S-pyridylethylation","type":"related"},{"name":"spyridylethylc","type":"exact"},{"name":"vinylpyridine derivatized cysteine residue","type":"exact"}],"termid":"MOD:00424"}


id: PBO:0071833
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S2 pseudogene 28","termid":"PBO:0071833"}


id: PBO:0062021
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily M member 2","termid":"PBO:0062021"}


id: PR:Q9HGL8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpl4301 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9HGL8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L43-A (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC800.04c","synonyms":[{"name":"L37A (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-rpl4301","type":"exact"}],"termid":"PR:Q9HGL8"}


id: GO:2000890
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a cellodextrin.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligosaccharide catabolic process","termid":"GO:0009313"},{"relation_name":"is_a","term_name":"dextrin catabolic process","termid":"GO:1901027"},{"relation_name":"is_a","term_name":"cellodextrin metabolic process","termid":"GO:2000889"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"cellodextrin catabolic process","synonyms":[{"name":"cellodextrin catabolism","type":"exact"}],"termid":"GO:2000890"}


id: GO:0018555
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: phenanthrene + NADH + H+ + O2 = NAD+ + cis-3,4-dihydroxy-3,4-dihydrophenanthrene.","definition_xrefs":["UM-BBD_reactionID:r0455"],"gene_count":0,"genotype_count":0,"name":"obsolete phenanthrene dioxygenase activity (obsolete GO:0018555)","termid":"GO:0018555"}


id: GO:0060580
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell becomes capable of differentiating autonomously into a ventral spinal cord interneuron regardless of its environment; upon determination, the cell fate cannot be reversed. Ventral spinal cord interneurons are cells located in the ventral portion of the spinal cord that transmit signals between sensory and motor neurons and are required for reflexive responses.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron fate determination","termid":"GO:0048664"},{"relation_name":"is_a","term_name":"cell fate determination involved in pattern specification","termid":"GO:0060582"},{"relation_name":"part_of","term_name":"ventral spinal cord interneuron fate commitment","termid":"GO:0060579"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ventral spinal cord interneuron fate determination","termid":"GO:0060580"}


id: PBO:0062334
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 6 subfamily C member 73 pseudogene","termid":"PBO:0062334"}


id: GO:0015170
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of propanediol from one side of a membrane to the other. Propanediol is a sweet colorless, viscous, hygroscopic liquid used as an antifreeze and in brake fluid; it is also as a humectant in cosmetics and personal care items, although it can be absorbed through the skin with harmful effects.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyol transmembrane transporter activity","termid":"GO:0015166"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"propanediol transmembrane transporter activity","termid":"GO:0015170"}


id: FYPO:0006812
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a protein measured in the RNA polymerase II core complex is lower than normal.","definition_xrefs":["PMID:10503538","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal subcellular component during vegetative growth","termid":"FYPO:0001322"},{"relation_name":"is_a","term_name":"decreased protein level during vegetative growth","termid":"FYPO:0001324"},{"relation_name":"is_a","term_name":"abnormal protein complex composition","termid":"FYPO:0005003"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0006551"],"is_obsolete":false,"name":"decreased protein level in RNA polymerase II core complex","synonyms":[{"name":"decreased RNA polymerase II core complex protein level during vegetative growth","type":"exact"},{"name":"decreased protein level in RNA polymerase II complex","type":"broad"},{"name":"decreased protein level in RNA polymerase II core complex during mitotic cell cycle","type":"related"},{"name":"decreased protein level in RNA polymerase II core complex during vegetative growth","type":"exact"},{"name":"decreased protein level in RNAP II core complex","type":"exact"},{"name":"reduced protein level in RNA polymerase II core complex","type":"exact"}],"termid":"FYPO:0006812"}


id: MONDO:0021921
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"corneal disorder","termid":"MONDO:0000942"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"muscular atrophy","termid":"MONDO:0004323"},{"relation_name":"is_a","term_name":"kidney disorder","termid":"MONDO:0005240"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"},{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0005336","MONDO:0005240"],"is_obsolete":false,"name":"Arnold stickler bourne syndrome","secondary_identifiers":["UMLS:C2931492","GARD:366","MEDGEN:419426","MESH:C537431"],"synonyms":[{"name":"corneal crystals myopathy and nephropathy","type":"related"},{"name":"corneal crystals myopathy and neuropathy","type":"related"}],"termid":"MONDO:0021921","xrefs":{"Monarch":{"xref_id":"0021921"}}}


id: PBO:0087280
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Short open reading frame, shows evidence of translation; may be new protein-coding gene that originated de novo from noncoding sequence; same allele found in at least 33 other S. cerevisiae strains; at least 3 strains have a second allele with three nucleotide substitutions leading to two amino acid differences","termid":"PBO:0087280"}


id: GO:0001578
data:
  {"annotated_genes":["SJAG_04566","SJAG_03264","SJAG_02624","SJAG_04841","SJAG_01613","SJAG_03073","SJAG_01546"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97100,97610,99558,101778,113152,113162,118550],"is_not":false,"summary":null,"term":"GO:0001578"}]},"cv_name":"biological_process","definition":"A process that results in a parallel arrangement of microtubules.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubule cytoskeleton organization","termid":"GO:0000226"}],"gene_count":7,"genes_by_uniquename":{"SJAG_01546":null,"SJAG_01613":null,"SJAG_02624":null,"SJAG_03073":null,"SJAG_03264":null,"SJAG_04566":null,"SJAG_04841":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0000226"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007010"}],"interesting_parent_ids":["GO:0007010","GO:0008150","GO:0000226"],"is_obsolete":false,"name":"microtubule bundle formation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"microtubule bundling","type":"exact"}],"termid":"GO:0001578","terms_by_termid":{"GO:0001578":null}}


id: GO:0001923
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a hemopoietic stem cell acquires the specialized features of a B-1 B cell. B-1 B cells are a distinct subset of B cells characterized as being CD5 positive, found predominantly in the peritoneum, pleural cavities, and spleen, and enriched for self-reactivity.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mature B cell differentiation","termid":"GO:0002335"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"B-1 B cell differentiation","synonyms":[{"name":"B-1 B cell development","type":"related"},{"name":"B-1 B lymphocyte differentiation","type":"exact"},{"name":"B-1 B-cell differentiation","type":"exact"},{"name":"B-1 B-lymphocyte differentiation","type":"exact"}],"termid":"GO:0001923"}


id: MONDO:0012353
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any familial polycythemia in which the cause of the disease is a mutation in the EGLN1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial polycythemia","termid":"MONDO:0001115"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"erythrocytosis, familial, 3","secondary_identifiers":["GARD:18355","MEDGEN:377868","DOID:0080338","OMIM:609820","MESH:C565221","UMLS:C1853286"],"synonyms":[{"name":"ECYT3","type":"related"},{"name":"EGLN1 familial polycythemia","type":"exact"},{"name":"erythrocytosis, familial, 3","type":"exact"},{"name":"erythrocytosis, familial, type 3","type":"exact"},{"name":"familial polycythemia caused by mutation in EGLN1","type":"exact"}],"termid":"MONDO:0012353","xrefs":{"Monarch":{"xref_id":"0012353"}}}


id: PBO:0076579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TBC1 domain family member 3 pseudogene 7","termid":"PBO:0076579"}


id: MONDO:0018092
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A bilateral, chronic, diffuse granulomatous panuveitis typically characterized by serous retinal detachment and frequently associated with neurological (meningitis), auditory, and dermatological alterations.","definition_xrefs":["Orphanet:3437"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"excluded_subClassOf","term_name":"autoimmune disorder of the nervous system","termid":"MONDO:0002977"},{"relation_name":"excluded_subClassOf","term_name":"nervous system disorder","termid":"MONDO:0005071"},{"relation_name":"excluded_subClassOf","term_name":"obsolete eyebrow/eyelashes pigmentation anomaly (obsolete MONDO:0020191)","termid":"MONDO:0020191"},{"relation_name":"is_a","term_name":"panuveitis","termid":"MONDO:0017255"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"Vogt-Koyanagi-Harada disease","secondary_identifiers":["NCIT:C85218","MEDGEN:22599","ICD9:363.22","UMLS:C0042170","MESH:D014607","SCTID:193497004","ICD9:364.24","GARD:7862","DOID:12297","NORD:1829"],"synonyms":[{"name":"Harada's disease","type":"exact"},{"name":"Uveomenigitic syndrome","type":"exact"},{"name":"VKH disease","type":"related"},{"name":"VKH syndrome","type":"related"},{"name":"Vogt-Koyanagi syndrome","type":"exact"},{"name":"Vogt-Koyanagi-Harada syndrome","type":"related"},{"name":"uveomeningoencephalitic syndrome","type":"exact"}],"termid":"MONDO:0018092","xrefs":{"Monarch":{"xref_id":"0018092"}}}


id: PBO:0042142
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-C motif chemokine ligand 3 like 3","termid":"PBO:0042142"}


id: PBO:0075927
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ST13, Hsp70 interacting protein pseudogene 19","termid":"PBO:0075927"}


id: GO:0090725
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The non-central region or periphery of the migrating motile tip of a growing nerve cell axon or dendrite.","definition_xrefs":["GOC:sl","PMID:16260607"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"growth cone","termid":"GO:0030426"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"peripheral region of growth cone","termid":"GO:0090725"}


id: PBO:0081813
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 736 pseudogene 6, Y-linked","termid":"PBO:0081813"}


id: PBO:0082575
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Chitin synthase III; catalyzes the transfer of N-acetylglucosamine (GlcNAc) to chitin; required for synthesis of the majority of cell wall chitin, the chitin ring during bud emergence, and spore wall chitosan; contains overlapping di-leucine and di-acidic signals that mediate, respectively, intracellular trafficking by AP-1 and trafficking to plasma membrane by exomer complex; requires AP-3 complex for its intracellular retention","termid":"PBO:0082575"}


id: GO:0061581
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of a corneal epithelial cell from one site to another, often during the development of a multicellular organism.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell migration","termid":"GO:0010631"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"corneal epithelial cell migration","termid":"GO:0061581"}


id: PBO:0041592
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carbonic anhydrase 5A pseudogene 1","termid":"PBO:0041592"}


id: PBO:0047787
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"forkhead box D4 like 4","termid":"PBO:0047787"}


id: GO:1903608
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within a cytoplasmic stress granule.","definition_xrefs":["GO_REF:0000087","PMID:24755092","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to organelle","termid":"GO:0033365"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"protein localization to cytoplasmic stress granule","synonyms":[{"name":"protein localisation in cytoplasmic stress granule","type":"exact"},{"name":"protein localisation to cytoplasmic stress granule","type":"exact"},{"name":"protein localization in cytoplasmic stress granule","type":"exact"},{"name":"protein localization to stress granule","type":"broad"}],"termid":"GO:1903608"}


id: GO:0051946
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the directed movement of L-glutamate into a neuron or glial cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of L-glutamate import across plasma membrane","termid":"GO:0002036"},{"relation_name":"is_a","term_name":"regulation of amino acid uptake involved in synaptic transmission","termid":"GO:0051941"},{"relation_name":"regulates","term_name":"glutamate reuptake","termid":"GO:0051935"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"regulation of glutamate uptake involved in transmission of nerve impulse","synonyms":[{"name":"regulation of L-glutamate reuptake","type":"exact"},{"name":"regulation of L-glutamate uptake during transmission of nerve impulse","type":"exact"},{"name":"regulation of glutamate reuptake","type":"exact"},{"name":"regulation of glutamate uptake during transmission of nerve impulse","type":"related"},{"name":"regulation of glutamate uptake involved in conduction of nerve impulse","type":"exact"}],"termid":"GO:0051946"}


id: GO:0045823
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of heart contraction.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of heart contraction","termid":"GO:0008016"},{"relation_name":"is_a","term_name":"positive regulation of blood circulation","termid":"GO:1903524"},{"relation_name":"positively_regulates","term_name":"heart contraction","termid":"GO:0060047"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of heart contraction","synonyms":[{"name":"activation of heart contraction","type":"narrow"},{"name":"positive regulation of cardiac contraction","type":"exact"},{"name":"stimulation of heart contraction","type":"narrow"},{"name":"up regulation of heart contraction","type":"exact"},{"name":"up-regulation of heart contraction","type":"exact"},{"name":"upregulation of heart contraction","type":"exact"}],"termid":"GO:0045823"}


id: GO:0047149
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-homocysteine + dimethylsulfonioacetate = (methylthio)acetate + L-methionine + H+.","definition_xrefs":["EC:2.1.1.3","RHEA:22788"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-methyltransferase activity","termid":"GO:0008172"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016741","GO:0003824"],"is_obsolete":false,"name":"thetin-homocysteine S-methyltransferase activity","secondary_identifiers":["MetaCyc:2.1.1.3-RXN","KEGG_REACTION:R04153"],"synonyms":[{"name":"dimethylsulfonioacetate:L-homocysteine S-methyltransferase activity","type":"related"},{"name":"dimethylthetin-homocysteine methyltransferase activity","type":"related"},{"name":"thetin-homocysteine methylpherase activity","type":"related"}],"termid":"GO:0047149"}


id: GO:0003363
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Formation of a lamellipodium, a thin sheetlike extension of the surface of a migrating cell that contributes to the directed self propelled movement of a cell.","definition_xrefs":["GOC:ascb_2009","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lamellipodium assembly","termid":"GO:0030032"},{"relation_name":"part_of","term_name":"ameboidal-type cell migration","termid":"GO:0001667"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"lamellipodium assembly involved in ameboidal cell migration","termid":"GO:0003363"}


id: PBO:0002344
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"enhancer of rudimentary homolog","termid":"PBO:0002344"}


id: GO:0018466
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: (1S,2S,4R)-limonene-1,2-diol + DCPIP+ = DCPIPH + H+ + (1S,4R)-1-hydroxy-2-oxolimonene.","definition_xrefs":["UM-BBD_reactionID:r0735"],"gene_count":0,"genotype_count":0,"name":"obsolete limonene-1,2-diol dehydrogenase activity (obsolete GO:0018466)","termid":"GO:0018466"}


id: GO:0033078
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a precursor cell type acquires the specialized features of a T cell via a differentiation pathway independent of the thymus.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T cell differentiation","termid":"GO:0030217"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"extrathymic T cell differentiation","synonyms":[{"name":"extrathymic T cell development","type":"related"}],"termid":"GO:0033078"}


id: GO:0032983
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An assembly of four or five subunits which form a structure with an extracellular N-terminus and a large loop that together form the ligand binding domain. The C-terminus is intracellular. The ionotropic glutamate receptor complex itself acts as a ligand gated ion channel; on binding glutamate, charged ions pass through a channel in the center of the receptor complex. Kainate receptors are multimeric assemblies of GluK1-3 (also called GluR5-7), GluK4 (KA1) and GluK5 (KA2) subunits.","definition_xrefs":["GOC:bf","PMID:18655795"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ionotropic glutamate receptor complex","termid":"GO:0008328"},{"relation_name":"is_a","term_name":"potassium channel complex","termid":"GO:0034705"},{"relation_name":"is_a","term_name":"sodium channel complex","termid":"GO:0034706"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005886","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"kainate selective glutamate receptor complex","termid":"GO:0032983"}


id: PBO:0056037
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"latent transforming growth factor beta binding protein 2","termid":"PBO:0056037"}


id: PR:O14241
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An actin-related protein 2/3 complex subunit 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01152","PRO:DNx","PANTHER:PTHR12058:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin-related protein 2/3 complex subunit 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6F6.10c","secondary_identifiers":["UniProtKB:O14241"],"synonyms":[{"name":"Spom972h-ARPC2","type":"exact"},{"name":"arp2/3 complex 34 kDa subunit (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"p34-ARC (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14241"}


id: MONDO:0030726
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"severe congenital neutropenia","termid":"MONDO:0018542"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"neutropenia, severe congenital, 9, autosomal dominant","secondary_identifiers":["UMLS:C5676954","OMIM:619813","MEDGEN:1802793"],"synonyms":[{"name":"SCN9","type":"exact"},{"name":"neutropenia, severe congenital, 9, autosomal dominant","type":"exact"}],"termid":"MONDO:0030726","xrefs":{"Monarch":{"xref_id":"0030726"}}}


id: GO:0061227
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any developmental process that results in the creation of defined areas or spaces within the mesonephros to which cells respond and eventually are instructed to differentiate.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pattern specification involved in kidney development","termid":"GO:0061004"},{"relation_name":"part_of","term_name":"mesonephros development","termid":"GO:0001823"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pattern specification involved in mesonephros development","synonyms":[{"name":"mesonephros pattern formation","type":"related"},{"name":"mesonephros pattern specification","type":"exact"}],"termid":"GO:0061227"}


id: GO:0098022
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A type of capsid decoration composed of fiber structures.","definition_xrefs":["GOC:bm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral capsid, decoration","termid":"GO:0098021"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"viral capsid, fiber","synonyms":[{"name":"head/capsid fiber","type":"related"}],"termid":"GO:0098022"}


id: PBO:0046361
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endosulfine alpha pseudogene 3","termid":"PBO:0046361"}


id: GO:0071372
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a follicle-stimulating hormone stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to follicle-stimulating hormone","termid":"GO:0032354"},{"relation_name":"is_a","term_name":"cellular response to gonadotropin stimulus","termid":"GO:0071371"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to follicle-stimulating hormone stimulus","synonyms":[{"name":"cellular response to FSH stimulus","type":"exact"},{"name":"cellular response to follicle stimulating hormone stimulus","type":"exact"}],"termid":"GO:0071372"}


id: PBO:0086842
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative pulcherrimin transporter; involved in uptake of iron-transporting siderophore, pulcherrimin","termid":"PBO:0086842"}


id: PATO:0001872
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A convex 3-D shape quality inhering in a bearer by virtue of the bearer's resemblance to a cube (a 3-D shape with a square cross section).","definition_xrefs":["PATOC:MAH"],"direct_ancestors":[{"relation_name":"has_cross_section","term_name":"square","termid":"PATO:0000413"},{"relation_name":"is_a","term_name":"convex 3-D shape","termid":"PATO:0002007"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cuboid","synonyms":[{"name":"block-like","type":"related"},{"name":"cuboidal","type":"exact"}],"termid":"PATO:0001872"}


id: PBO:0036353
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytoplasmic translation release factor class I eRF1","termid":"PBO:0036353"}


id: PBO:0059838
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial fission regulator 2","termid":"PBO:0059838"}


id: GO:0140931
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: neutral L-amino acid(out) + Na+(out) + Cl-(out) = neutral L-amino acid(in) + Na+(in)+ Cl-(in).","definition_xrefs":["PMID:19478081"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid:sodium symporter activity","termid":"GO:0005283"},{"relation_name":"is_a","term_name":"neutral L-amino acid transmembrane transporter activity","termid":"GO:0015175"},{"relation_name":"is_a","term_name":"sodium:chloride symporter activity","termid":"GO:0015378"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"neutral L-amino acid:sodium:chloride symporter activity","synonyms":[{"name":"neutral amino acid:sodium:chloride symporter activity","type":"exact"}],"termid":"GO:0140931"}


id: GO:0061130
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The morphogenetic process in which the foregut region specified to become the pancreas forms a bud.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"animal organ formation","termid":"GO:0048645"},{"relation_name":"is_a","term_name":"branching involved in pancreas morphogenesis","termid":"GO:0061114"},{"relation_name":"is_a","term_name":"epithelial tube formation","termid":"GO:0072175"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pancreatic bud formation","termid":"GO:0061130"}


id: PBO:0013768
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human CNBP","termid":"PBO:0013768"}


id: MONDO:0014301
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Dowling-Degos disease","termid":"MONDO:0008371"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0024322"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0024322","MONDO:0005093"],"is_obsolete":false,"name":"dowling-degos disease 3","secondary_identifiers":["OMIM:615674","GARD:16001","UMLS:C3810286","MEDGEN:816616"],"synonyms":[{"name":"DDD3","type":"exact"},{"name":"Dowling-Degos disease 3","type":"related"}],"termid":"MONDO:0014301","xrefs":{"Monarch":{"xref_id":"0014301"}}}


id: FYPO:0001951
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the export of calcium ions out of a cell is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal transport during vegetative growth","termid":"FYPO:0005973"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0000138","FYPO:0001985"],"is_obsolete":false,"name":"abnormal calcium export","synonyms":[{"name":"abnormal calcium efflux from cell","type":"exact"},{"name":"abnormal calcium export during mitotic cell cycle","type":"related"},{"name":"abnormal calcium export during vegetative growth","type":"exact"},{"name":"abnormal calcium export from cell","type":"narrow"},{"name":"abnormal calcium ion export","type":"exact"},{"name":"abnormal calcium ion export from cell","type":"exact"},{"name":"abnormal cellular calcium export","type":"exact"}],"termid":"FYPO:0001951"}


id: GO:0047885
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-trans,6-trans-farnesol = 2-cis,6-trans-farnesol.","definition_xrefs":["EC:5.2.1.9","RHEA:13401"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cis-trans isomerase activity","termid":"GO:0016859"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016853"],"is_obsolete":false,"name":"farnesol 2-isomerase activity","secondary_identifiers":["KEGG_REACTION:R03265","MetaCyc:FARNESOL-2-ISOMERASE-RXN"],"synonyms":[{"name":"2-trans,6-trans-farnesol 2-cis-trans-isomerase activity","type":"related"},{"name":"farnesol isomerase activity","type":"related"}],"termid":"GO:0047885"}


id: PBO:0061651
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nudix hydrolase 22","termid":"PBO:0061651"}


id: PBO:0059484
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MSRA divergent transcript","termid":"PBO:0059484"}


id: FYPO:0002692
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to paraquat. Cells stop growing (and may die) at a concentration of paraquat that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0001985","FYPO:0005447","FYPO:0002683","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to paraquat","synonyms":[{"name":"hypersensitive to paraquat","type":"exact"},{"name":"sensitive to paraquat during mitotic cell cycle","type":"related"},{"name":"sensitive to paraquat during vegetative growth","type":"exact"}],"termid":"FYPO:0002692"}


id: PATO:0001129
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001129 relative work value (obsolete PATO:0001129)","termid":"PATO:0001129"}


id: PBO:0048994
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glypican 5","termid":"PBO:0048994"}


id: PBO:0071754
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein lateral stalk subunit P1 pseudogene 1","termid":"PBO:0071754"}


id: PBO:0081306
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 90 pseudogene 1","termid":"PBO:0081306"}


id: PR:O94285
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DNA-directed RNA polymerase III subunit RPC8 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR12709:SF2","OMA:SCHPO03339"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-directed RNA polymerase III subunit rpc8 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC2G5.07c","secondary_identifiers":["UniProtKB:O94285"],"synonyms":[{"name":"RNA polymerase III subunit C25 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"RNA polymerase III subunit C8 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-POLR3H","type":"exact"}],"termid":"PR:O94285"}


id: PBO:0036112
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_H3-K4_acetylation_during_vegetative_growth","termid":"PBO:0036112"}


id: PBO:0073670
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal regulatory protein alpha","termid":"PBO:0073670"}


id: PBO:0066831
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 130","termid":"PBO:0066831"}


id: PBO:0046222
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongin C pseudogene 15","termid":"PBO:0046222"}


id: GO:0007488
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures derived from the histoblast disc are generated and organized. This includes the transformation of histoblast cells into adult structures during pupal metamorphosis. Histoblast cells are cells founded in the embryo that are the progenitors to the adult abdomen.","definition_xrefs":["GOC:bf","ISBN:0879694238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell morphogenesis","termid":"GO:0000902"},{"relation_name":"is_a","term_name":"imaginal disc morphogenesis","termid":"GO:0007560"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"histoblast morphogenesis","synonyms":[{"name":"histoblast metamorphosis","type":"exact"}],"termid":"GO:0007488"}


id: SO:0000065
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A chromosome structure variation whereby an arm exists as an individual chromosome element.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome_structure_variation","termid":"SO:1000183"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"free_chromosome_arm","synonyms":[{"name":"free chromosome arm","type":"exact"}],"termid":"SO:0000065"}


id: PBO:0027415
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_m7G(5')pppN_diphosphatase_activity","termid":"PBO:0027415"}


id: FYPO:0007945
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which homologous chromosome pairing during meiosis I prophase is abnormal at a cis-acting homologous chromosome pairing region such as the sme2 locus.","definition_xrefs":["PomBase:val"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal homologous chromosome pairing at cis-acting homologous chromosome pairing region","termid":"FYPO:0003052"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000641","FYPO:0005447","FYPO:0000631","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal homologous chromosome pairing at cis-acting homologous chromosome pairing region during meiotic prophase I","termid":"FYPO:0007945"}


id: PBO:0034143
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_fused_element","termid":"PBO:0034143"}


id: GO:0048254
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which small nucleolar RNA is transported to, or maintained in, a specific location.","definition_xrefs":["ISBN:0716731363"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA localization","termid":"GO:0006403"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"snoRNA localization","synonyms":[{"name":"establishment and maintenance of snoRNA localization","type":"exact"},{"name":"small nucleolar RNA localization","type":"exact"},{"name":"snoRNA localisation","type":"exact"}],"termid":"GO:0048254"}


id: MONDO:0037735
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A cancer that involves the sebaceous gland.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"skin cancer","termid":"MONDO:0002898"},{"relation_name":"is_a","term_name":"sebaceous gland neoplasm","termid":"MONDO:0006963"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0004992"],"is_obsolete":false,"name":"sebaceous gland cancer","secondary_identifiers":["UMLS:C1382026","MEDGEN:235134","NCIT:C8409"],"synonyms":[{"name":"cancer of sebaceous gland","type":"exact"},{"name":"malignant neoplasm of sebaceous gland","type":"exact"},{"name":"malignant neoplasm of the sebaceous gland","type":"exact"},{"name":"malignant sebaceous gland neoplasm","type":"exact"},{"name":"malignant sebaceous gland tumor","type":"exact"},{"name":"malignant sebaceous gland tumour","type":"exact"},{"name":"malignant sebaceous neoplasm","type":"exact"},{"name":"malignant sebaceous tumor","type":"exact"},{"name":"malignant sebaceous tumour","type":"exact"},{"name":"malignant tumor of sebaceous gland","type":"exact"},{"name":"malignant tumor of the sebaceous gland","type":"exact"},{"name":"malignant tumour of sebaceous gland","type":"exact"},{"name":"malignant tumour of the sebaceous gland","type":"exact"}],"termid":"MONDO:0037735","xrefs":{"Monarch":{"xref_id":"0037735"}}}


id: GO:1903677
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cap-independent translational initiation.","definition_xrefs":["GOC:PARL","GOC:TermGenie","GO_REF:0000058","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytoplasmic translational initiation","termid":"GO:1904688"},{"relation_name":"regulates","term_name":"cap-independent translational initiation","termid":"GO:0002190"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0002181"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0002181","GO:0008150"],"is_obsolete":false,"name":"regulation of cap-independent translational initiation","termid":"GO:1903677"}


id: PBO:0062974
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"poly(A) binding protein cytoplasmic 4 like","termid":"PBO:0062974"}


id: MONDO:0000547
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete ovarian serous carcinoma (obsolete MONDO:0000547)","termid":"MONDO:0000547","xrefs":{"Monarch":{"xref_id":"0000547"}}}


id: PBO:0088152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V-ATPase assembly factor; functions with other V-ATPase assembly factors in the ER to efficiently assemble the V-ATPase membrane sector (V0); protein abundance increases in response to DNA replication stress","termid":"PBO:0088152"}


id: MONDO:0010430
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any non-syndromic X-linked intellectual disability in which the cause of the disease is a mutation in the ZNF711 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-syndromic X-linked intellectual disability","termid":"MONDO:0019181"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intellectual disability, X-linked 97","secondary_identifiers":["MEDGEN:440689","MESH:C567583","GARD:22686","UMLS:C2749020","DOID:0112046","OMIM:300803"],"synonyms":[{"name":"MRX97","type":"related"},{"name":"Mrxz","type":"related"},{"name":"ZNF711 non-syndromic X-linked intellectual disability","type":"exact"},{"name":"intellectual developmental disorder, X-linked 97","type":"exact"},{"name":"intellectual disability, X-linked 65","type":"related"},{"name":"intellectual disability, X-linked 97","type":"exact"},{"name":"intellectual disability, X-linked type 97","type":"exact"},{"name":"mental retardation, X-linked 65","type":"related"},{"name":"mental retardation, X-linked 97","type":"related"},{"name":"mental retardation, X-linked type 97","type":"exact"},{"name":"non-syndromic X-linked intellectual disability caused by mutation in ZNF711","type":"exact"}],"termid":"MONDO:0010430","xrefs":{"Monarch":{"xref_id":"0010430"}}}


id: PBO:0036548
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis protein Bmt5 (predicted)","termid":"PBO:0036548"}


id: MONDO:0012458
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"essential hypertension","termid":"MONDO:0001134"},{"relation_name":"excluded_subClassOf","term_name":"essential hypertension, genetic","termid":"MONDO:0007781"},{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypertension, essential, susceptibility to, 5","secondary_identifiers":["OMIM:610261","UMLS:C1853227","MEDGEN:339933"],"synonyms":[{"name":"Hyt5","type":"related"},{"name":"hypertension, essential, body Mass-related","type":"related"},{"name":"hypertension, essential, susceptibility to, 5","type":"exact"},{"name":"hypertension, essential, susceptibility to, type 5","type":"exact"}],"termid":"MONDO:0012458","xrefs":{"Monarch":{"xref_id":"0012458"}}}


id: PATO:0001856
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An oriented quality inhering in a bearer by virtue of the bearer's being turned inward upon itself.","definition_xrefs":["die.net:die.net"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oriented","termid":"PATO:0000614"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"introverted","termid":"PATO:0001856"}


id: PBO:0088862
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA N-glycosylase activity","termid":"PBO:0088862"}


id: GO:0052143
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a motile cell or organism in response to a specific chemical concentration gradient on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete chemotaxis on or near host involved in symbiotic interaction (obsolete GO:0052143)","synonyms":[{"name":"chemotaxis on or near host during symbiotic interaction","type":"related"}],"termid":"GO:0052143"}


id: PBO:0039135
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aryl hydrocarbon receptor interacting protein like 1","termid":"PBO:0039135"}


id: FYECO:0000191
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which biotin was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ biotin","termid":"FYECO:0000191"}


id: GO:0031891
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type 1 vasoactive intestinal polypeptide receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vasoactive intestinal polypeptide receptor binding","termid":"GO:0031890"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"type 1 vasoactive intestinal polypeptide receptor binding","synonyms":[{"name":"type 1 vasoactive intestinal polypeptide receptor ligand","type":"narrow"},{"name":"type 2 PACAP receptor binding","type":"exact"}],"termid":"GO:0031891"}


id: PBO:0089236
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal peptidase complex subunit Spc1","termid":"PBO:0089236"}


id: PBO:0058584
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6717","termid":"PBO:0058584"}


id: MONDO:0017063
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spina bifida aperta","termid":"MONDO:0017062"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"total spina bifida aperta","secondary_identifiers":["icd11.foundation:910194123","GARD:20952","Orphanet:268377"],"termid":"MONDO:0017063","xrefs":{"Monarch":{"xref_id":"0017063"}}}


id: SO:0001992
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A non-synonymous variant is an inframe, protein altering variant, resulting in a codon change.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inframe_variant","termid":"SO:0001650"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nonsynonymous_variant","synonyms":[{"name":"non_synonymous_coding","type":"exact"},{"name":"nonsynonymous variant","type":"exact"}],"termid":"SO:0001992"}


id: MONDO:0100275
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any disorder of plasmalogen biosynthesis in which the cause of the disease is a mutation in the FAR1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disorder of plasmalogens biosynthesis","termid":"MONDO:0017986"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019053"},{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0002525","MONDO:0019053","MONDO:0005066"],"is_obsolete":false,"name":"fatty acyl-CoA reductase defects","synonyms":[{"name":"FAR1 defect","type":"exact"},{"name":"fatty acyl-CoA reductase defects","type":"exact"}],"termid":"MONDO:0100275","xrefs":{"Monarch":{"xref_id":"0100275"}}}


id: PBO:0041146
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BTF3 pseudogene 1","termid":"PBO:0041146"}


id: PBO:0113001
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alpha subunit of translation initiation factor eIF2B (eIF2Bα); guanine-nucleotide exchange factor for eIF2; mutations in eIF2Bα alter localization of eIF2B; activity regulated by phosphorylated eIF2; positive regulator of GCN4 expression; mutations in human ortholog EIF2B2 cause fatal brain disease childhood ataxia with central nervous system hypomyelination (CACH); human ortholog EIF2B1 can complement yeast null mutant","termid":"PBO:0113001"}


id: MONDO:0700045
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disease caused by infection with achlorophyllic algae of the genus Prototheca, the majority caused by the species P. wickerhamii. Clinical manifestations of reported cases have included cutaneous lesions, olecranon bursitis, or systemic involvement.","definition_xrefs":["MONDO:patterns/infectious_disease_by_agent","PMID:15124862"],"direct_ancestors":[{"relation_name":"is_a","term_name":"infectious disease","termid":"MONDO:0005550"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protothecosis","secondary_identifiers":["UMLS:C0033735","MEDGEN:508074","icd11.foundation:2034403589"],"termid":"MONDO:0700045","xrefs":{"Monarch":{"xref_id":"0700045"}}}


id: GO:0072294
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the connecting tubule of the metanephric nephron acquires its identity.","definition_xrefs":["GOC:mtg_kidney_jan10","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"specification of connecting tubule identity","termid":"GO:0072085"},{"relation_name":"is_a","term_name":"specification of metanephric nephron tubule identity","termid":"GO:0072293"},{"relation_name":"part_of","term_name":"metanephric connecting tubule development","termid":"GO:0072286"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"specification of metanephric connecting tubule identity","termid":"GO:0072294"}


id: SO:0000617
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"This type of promoter recruits RNA pol III. This promoter is intragenic and includes an A box, an intermediate element, and a C box. This is well conserved in the 5s rRNA promoters across species.","definition_xrefs":["PMID:12381659"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNApol_III_promoter","termid":"SO:0000171"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNApol_III_promoter_type_1","synonyms":[{"name":"RNApol III promoter type 1","type":"exact"}],"termid":"SO:0000617"}


id: MONDO:0032917
data:
  {"annotated_genes":["SJAG_03088"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87041],"is_not":false,"summary":null,"term":"MONDO:0032917"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant nonsyndromic hearing loss","termid":"MONDO:0019587"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03088":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0019497"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0019497"],"is_obsolete":false,"name":"hearing loss, autosomal dominant 76","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0112167","GARD:18154","UMLS:C5394080","MEDGEN:1710038","OMIM:618787"],"synonyms":[{"name":"DEAFNESS, AUTOSOMAL DOMINANT 76","type":"narrow"},{"name":"DFNA76","type":"narrow"},{"name":"deafness, autosomal dominant 76","type":"narrow"}],"termid":"MONDO:0032917","terms_by_termid":{"MONDO:0032917":null},"xrefs":{"Monarch":{"xref_id":"0032917"}}}


id: PBO:0083737
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential component of the Arp2/3 complex; Arp2/3 is a highly conserved actin nucleation center required for the motility and integrity of actin patches; involved in endocytosis and membrane growth and polarity","termid":"PBO:0083737"}


id: PBO:0055980
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucine rich repeat neuronal 3","termid":"PBO:0055980"}


id: MONDO:0043373
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Sensorineural hearing loss which develops suddenly over a period of hours or a few days. It varies in severity from mild to total deafness. Sudden deafness can be due to head trauma, vascular diseases, infections, or can appear without obvious cause or warning.","definition_xrefs":["MESH:D003639"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sudden hearing loss disorder","termid":"MONDO:0020677"},{"relation_name":"is_a","term_name":"sensorineural hearing loss disorder","termid":"MONDO:0020678"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sudden sensorineural hearing loss","secondary_identifiers":["UMLS:C4275242","GARD:12927","SCTID:715239002","MEDGEN:907022","Orphanet:90059"],"synonyms":[{"name":"acute sensorineural hearing loss by acute acoustic trauma or sudden deafness or surgery induced acoustic trauma","type":"related"},{"name":"deafness, sudden","type":"related"},{"name":"sudden deafness","type":"related"},{"name":"sudden hearing loss","type":"broad"},{"name":"sudden sensorineural hearing loss","type":"exact"}],"termid":"MONDO:0043373","xrefs":{"Monarch":{"xref_id":"0043373"}}}


id: PBO:0044191
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chymotrypsin like","termid":"PBO:0044191"}


id: PBO:0089846
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial translation initiation factor IF-2Mt/Mti2","termid":"PBO:0089846"}


id: PBO:0054989
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2403","termid":"PBO:0054989"}


id: GO:0036033
data:
  {"annotated_genes":["SJAG_03981"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[103511],"is_not":false,"summary":null,"term":"GO:0036033"}]},"cv_name":"molecular_function","definition":"Binding to a mediator complex. The mediator complex is a protein complex that interacts with the carboxy-terminal domain of the largest subunit of RNA polymerase II and plays an active role in transducing the signal from a transcription factor to the transcriptional machinery. The Saccharomyces complex contains several identifiable subcomplexes: a head domain comprising Srb2, -4, and -5, Med6, -8, and -11, and Rox3 proteins; a middle domain comprising Med1, -4, and -7, Nut1 and -2, Cse2, Rgr1, Soh1, and Srb7 proteins; a tail consisting of Gal11p, Med2p, Pgd1p, and Sin4p; and a regulatory subcomplex comprising Ssn2, -3, and -8, and Srb8 proteins. Metazoan mediator complexes have similar modular structures and include homologs of yeast Srb and Med proteins.","definition_xrefs":["PMID:18391015","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex binding","termid":"GO:0044877"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03981":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"mediator complex binding","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0036033","terms_by_termid":{"GO:0036033":null}}


id: MONDO:0019862
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A condition where the heart is in the correct anatomic position but some or all of the other thoracoabdominal viscera are in the opposite lateral orientation.","definition_xrefs":["NCIT:C111647"],"direct_ancestors":[{"relation_name":"is_a","term_name":"visceral heterotaxy","termid":"MONDO:0018677"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"levocardia","secondary_identifiers":["MedDRA:10071015","GARD:12032","MEDGEN:7331","MESH:D007979","Orphanet:95854","ICD10CM:Q24.1","UMLS:C0023569","SCTID:205769006","icd11.foundation:848076902"],"synonyms":[{"name":"Isolated levocardia with situs inversus","type":"narrow"},{"name":"Situs inversus with levocardia","type":"narrow"},{"name":"levocardia-situs inversus","type":"exact"}],"termid":"MONDO:0019862","xrefs":{"Monarch":{"xref_id":"0019862"}}}


id: FYPO:0006791
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which a cell contains a normal number of lipid droplets.","definition_xrefs":["PMID:30355493","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal subcellular component during vegetative growth","termid":"FYPO:0001313"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0001320"],"is_obsolete":false,"name":"lipid droplets present in normal numbers","synonyms":[{"name":"lipid droplets present in normal numbers during mitotic cell cycle","type":"exact"},{"name":"lipid droplets present in normal numbers during vegetative growth","type":"exact"}],"termid":"FYPO:0006791"}


id: PBO:0027720
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_acetylation","termid":"PBO:0027720"}


id: GO:0001631
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with a cysteinyl leukotriene to initiate a change in cell activity. Cysteinyl leukotrienes are leukotrienes that contain a peptide group based on cysteine.","definition_xrefs":["ISBN:0198506732","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukotriene receptor activity","termid":"GO:0004974"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"cysteinyl leukotriene receptor activity","synonyms":[{"name":"CysLT receptor","type":"exact"}],"termid":"GO:0001631"}


id: PBO:0110367
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EPS8 signaling adaptor L1","termid":"PBO:0110367"}


id: GO:0140824
data:
  {"annotated_genes":["SJAG_03166","SJAG_01199","SJAG_02515","SJAG_01216","SJAG_00141"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[95534,109205,70693,76167,79755],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008379"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: [thioredoxin]-dithiol + a hydroperoxide = [thioredoxin]-disulfide + an alcohol + H2O.","definition_xrefs":["PMID:12707274","PMID:19820102","RHEA:62620"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peroxiredoxin activity","termid":"GO:0051920"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00141":null,"SJAG_01199":null,"SJAG_01216":null,"SJAG_02515":null,"SJAG_03166":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0051920"}],"interesting_parent_ids":["GO:0016491","GO:0051920","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"thioredoxin-dependent peroxiredoxin activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["EC:1.11.1.24"],"termid":"GO:0140824","terms_by_termid":{"GO:0008379":null}}


id: PBO:0079646
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBE2R2 antisense RNA 1","termid":"PBO:0079646"}


id: PBO:0089836
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lectin family glycoprotein receptor Emp46","termid":"PBO:0089836"}


id: MONDO:0010524
data:
  {"annotated_genes":["SJAG_02457"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86082],"is_not":false,"summary":null,"term":"MONDO:0010524"}]},"cv_name":"mondo","definition":"A rare syndromic, inherited form of sideroblastic anemia in which the cause of the disease is a mutation in the ABCB7 gene and is characterized by mild to moderate anemia (with hypochromia and microcytosis) and early-onset, non- or slowly progressive spinocerebellar ataxia.","definition_xrefs":["Orphanet:2802"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"X-linked sideroblastic anemia 1","termid":"MONDO:0020721"},{"relation_name":"is_a","term_name":"X-linked cerebellar ataxia","termid":"MONDO:0016612"},{"relation_name":"is_a","term_name":"inherited sideroblastic anemia","termid":"MONDO:0020099"},{"relation_name":"is_a","term_name":"mitochondrial disease","termid":"MONDO:0044970"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02457":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002280"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0002280","MONDO:0005559"],"is_obsolete":false,"name":"X-linked sideroblastic anemia with ataxia","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:668","MESH:C536358","MEDGEN:335078","OMIM:301310","UMLS:C1845028","SCTID:719816006","DOID:0050554","DOID:0060064"],"synonyms":[{"name":"ASAT","type":"exact"},{"name":"Pagon Bird Detter syndrome","type":"related"},{"name":"Pagon-Bird-Detter syndrome","type":"exact"},{"name":"X-linked sideroblastic Anaemia and ataxia","type":"related"},{"name":"X-linked sideroblastic Anemia and ataxia","type":"related"},{"name":"X-linked sideroblastic anaemia and ataxia","type":"exact"},{"name":"X-linked sideroblastic anaemia and spinocerebellar ataxia","type":"related"},{"name":"X-linked sideroblastic anaemia with spinocerebellar ataxia","type":"exact"},{"name":"X-linked sideroblastic anemia and ataxia","type":"exact"},{"name":"X-linked sideroblastic anemia and spinocerebellar ataxia","type":"related"},{"name":"X-linked sideroblastic anemia with ataxia","type":"exact"},{"name":"X-linked sideroblastic anemia with spinocerebellar ataxia","type":"exact"},{"name":"XLSA-A","type":"exact"},{"name":"Xlsa-A","type":"related"},{"name":"anaemia sideroblastic and spinocerebellar ataxia","type":"exact"},{"name":"anemia sideroblastic and spinocerebellar ataxia","type":"exact"},{"name":"anemia, Sex-linked hypochromic Siderobla","type":"related"},{"name":"anemia, sideroblastic, and spinocerebellar ataxia","type":"related"},{"name":"anemia, sideroblastic, with ataxia, X-linked recessive","type":"exact"},{"name":"sideroblastic anaemia with spinocerebellar ataxia","type":"exact"},{"name":"sideroblastic anemia with spinocerebellar ataxia","type":"exact"}],"termid":"MONDO:0010524","terms_by_termid":{"MONDO:0010524":null},"xrefs":{"Monarch":{"xref_id":"0010524"}}}


id: GO:0018983
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving Z-phenylacetaldoxime, a member of the glucosinolate group of compounds, a class of natural products that are gaining increasing interest as cancer-preventing agents and crop protectants.","definition_xrefs":["UM-BBD_pathwayID:pao"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldoxime metabolic process","termid":"GO:0019330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Z-phenylacetaldoxime metabolic process","synonyms":[{"name":"Z-phenylacetaldoxime metabolism","type":"exact"}],"termid":"GO:0018983"}


id: PBO:0075880
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ST3GAL5 pseudogene 1","termid":"PBO:0075880"}


id: FYPO:0006997
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone exchange occurs to a lower extent than normal at the silent mating-type cassette. Histone exchange is replacement, within chromatin, of resident histones or histone subunits with alternative, sometimes variant, histones or subunits.","definition_xrefs":["GO:0005721","PMID:26518661","GO:0043486","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization during vegetative growth","termid":"FYPO:0000443"},{"relation_name":"is_a","term_name":"abnormal chromatin organization during vegetative growth","termid":"FYPO:0001352"},{"relation_name":"is_a","term_name":"abnormal chromatin remodeling","termid":"FYPO:0006356"},{"relation_name":"is_a","term_name":"abnormal histone turnover","termid":"FYPO:0007472"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000641","FYPO:0001320","FYPO:0000138"],"is_obsolete":false,"name":"decreased histone turnover at silent mating-type cassette during vegetative growth","synonyms":[{"name":"decreased histone exchange at silent mating-type cassette during mitotic cell cycle","type":"related"},{"name":"decreased histone exchange at silent mating-type locus during vegetative growth","type":"exact"},{"name":"reduced histone turnover at silent mating-type cassette during vegetative growth","type":"exact"}],"termid":"FYPO:0006997"}


id: PBO:0060845
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuronal growth regulator 1","termid":"PBO:0060845"}


id: MONDO:0859356
data:
  {"annotated_genes":["SJAG_03865"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85891],"is_not":false,"summary":null,"term":"MONDO:0859356"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital disorder of glycosylation type II","termid":"MONDO:0005501"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03865":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0024322"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0024322","MONDO:0005066"],"is_obsolete":false,"name":"congenital disorder of glycosylation, type IIy","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1824067","OMIM:620200","UMLS:C5774294"],"termid":"MONDO:0859356","terms_by_termid":{"MONDO:0859356":null},"xrefs":{"Monarch":{"xref_id":"0859356"}}}


id: MONDO:0030072
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"developmental and epileptic encephalopathy","termid":"MONDO:0100062"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"},{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0700092","MONDO:0005027"],"is_obsolete":false,"name":"developmental and epileptic encephalopathy, 88","secondary_identifiers":["OMIM:618959","DOID:0112222","GARD:16398","MEDGEN:1712195","UMLS:C5394553"],"synonyms":[{"name":"DEE88","type":"exact"},{"name":"EIEE88","type":"exact"},{"name":"EPILEPTIC ENCEPHALOPATHY, EARLY INFANTILE, 88","type":"exact"},{"name":"developmental and epileptic encephalopathy 88","type":"exact"},{"name":"epileptic encephalopathy, early infantile, 88","type":"exact"}],"termid":"MONDO:0030072","xrefs":{"Monarch":{"xref_id":"0030072"}}}


id: MONDO:1011221
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Retinal detachment that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinal detachment, non-human animal","termid":"MONDO:1010321"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retinal detachment, dog","secondary_identifiers":["OMIA:000275-9615"],"termid":"MONDO:1011221","xrefs":{"Monarch":{"xref_id":"1011221"}}}


id: GO:1901683
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of an arsenate ion from one side of a membrane to the other.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane transporter activity","termid":"GO:0022857"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"arsenate ion transmembrane transporter activity","termid":"GO:1901683"}


id: PR:Q09176
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- uaf2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09176"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing factor U2AF 23 kDa subunit (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAP8A3.06","synonyms":[{"name":"Spom972h-uaf2","type":"exact"},{"name":"U2 auxiliary factor 23 kDa subunit (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"U2 snRNP auxiliary factor small subunit (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"U2AF23 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q09176"}


id: PBO:0041279
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C1q and TNF related 5","termid":"PBO:0041279"}


id: GO:1903325
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of snoRNA metabolic process.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of RNA metabolic process","termid":"GO:0051254"},{"relation_name":"is_a","term_name":"regulation of snoRNA metabolic process","termid":"GO:1903323"},{"relation_name":"positively_regulates","term_name":"sno(s)RNA metabolic process","termid":"GO:0016074"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016074"},{"rel_name":"positively_regulates","termid":"GO:0016074"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0016074","GO:0008150"],"is_obsolete":false,"name":"positive regulation of snoRNA metabolic process","synonyms":[{"name":"activation of snoRNA metabolic process","type":"narrow"},{"name":"activation of snoRNA metabolism","type":"narrow"},{"name":"positive regulation of snoRNA metabolism","type":"exact"},{"name":"up regulation of snoRNA metabolic process","type":"exact"},{"name":"up regulation of snoRNA metabolism","type":"exact"},{"name":"up-regulation of snoRNA metabolic process","type":"exact"},{"name":"up-regulation of snoRNA metabolism","type":"exact"},{"name":"upregulation of snoRNA metabolic process","type":"exact"},{"name":"upregulation of snoRNA metabolism","type":"exact"}],"termid":"GO:1903325"}


id: MONDO:0005657
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Aspergillosis is an infection, growth, or allergic response caused by the Aspergillus fungus. There are several different kinds of aspergillosis. One kind is allergic bronchopulmonary aspergillosis (also called ABPA), a condition where the fungus causes allergic respiratory symptoms similar to asthma, such as wheezing and coughing, but does not actually invade and destroy tissue. Another kind of aspergillosis is invasive aspergillosis. This infection usually affects people with weakened immune systems due to cancer, AIDS, leukemia, organ transplantation, chemotherapy, or other conditions or events that reduce the number of normal white blood cells. In this condition, the fungus invades and damages tissues in the body. Invasive aspergillosis most commonly affects the lungs, but can also cause infection in many other organs and can spread throughout the body (commonly affecting the kidneys and brain). Aspergilloma, a growth (fungus ball) that develops in an area of previous lung disease such as tuberculosis or lung abscess, is a third kind of aspergillosis. This type of aspergillosis is composed of a tangled mass of fungus fibers, blood clots, and white blood cells. The fungus ball gradually enlarges, destroying lung tissue in the process, but usually does not spread to other areas.","direct_ancestors":[{"relation_name":"is_a","term_name":"opportunistic mycosis","termid":"MONDO:0002312"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aspergillosis","secondary_identifiers":["EFO:0007157","MESH:D001228","DOID:13564","GARD:5856","ICD10CM:B44","MedDRA:10003488","NCIT:C2886","CSP:1988-4002","SCTID:65553006","ICD9:117.3","MEDGEN:13939","UMLS:C0004030","Orphanet:1163","icd11.foundation:1913468488"],"synonyms":[{"name":"infection due to Aspergillus","type":"exact"}],"termid":"MONDO:0005657","xrefs":{"Monarch":{"xref_id":"0005657"}}}


id: MONDO:0012094
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"prostate cancer, hereditary","termid":"MONDO:0700275"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"prostate cancer, hereditary, 4","secondary_identifiers":["GARD:15440","MESH:C563882","UMLS:C1837593","MEDGEN:325204","OMIM:608658"],"synonyms":[{"name":"HPC4","type":"related"},{"name":"prostate cancer, hereditary, 4","type":"exact"},{"name":"prostate cancer, hereditary, on chromosome 7","type":"related"},{"name":"prostate cancer, hereditary, type 4","type":"exact"},{"name":"prostate cancer, susceptibility to, 4","type":"exact"}],"termid":"MONDO:0012094","xrefs":{"Monarch":{"xref_id":"0012094"}}}


id: PBO:0088539
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial carrier, inorganic phosphate/copper","termid":"PBO:0088539"}


id: FYPO:0003675
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of the large form of 5.8S rRNA measured in a cell is higher than normal.","definition_xrefs":["PMID:8887563","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered rRNA or precursor level","termid":"FYPO:0005996"},{"relation_name":"is_a","term_name":"increased ncRNA level during vegetative growth","termid":"FYPO:0008146"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0006551"],"is_obsolete":false,"name":"increased mature 5.8SL rRNA level","synonyms":[{"name":"increased 5.8SL rRNA level","type":"broad"},{"name":"increased mature 5.8S (L) rRNA level","type":"exact"},{"name":"increased mature 5.8SL rRNA accumulation","type":"related"},{"name":"increased mature 5.8SL rRNA level during mitotic cell cycle","type":"related"},{"name":"increased mature 5.8SL rRNA level during vegetative growth","type":"exact"},{"name":"increased mature 5.8SL rRNA transcript level","type":"exact"}],"termid":"FYPO:0003675"}


id: GO:1901404
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of tetrapyrrole catabolic process.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of catabolic process","termid":"GO:0009894"},{"relation_name":"is_a","term_name":"regulation of tetrapyrrole metabolic process","termid":"GO:1901401"},{"relation_name":"regulates","term_name":"tetrapyrrole catabolic process","termid":"GO:0033015"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0033013"}],"interesting_parent_ids":["GO:0008150","GO:0033013"],"is_obsolete":false,"name":"regulation of tetrapyrrole catabolic process","synonyms":[{"name":"regulation of tetrapyrrole breakdown","type":"exact"},{"name":"regulation of tetrapyrrole catabolism","type":"exact"},{"name":"regulation of tetrapyrrole degradation","type":"exact"}],"termid":"GO:1901404"}


id: PBO:0085912
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; may interact with ribosomes, based on co-purification experiments; similar to transcriptional regulators from the zinc cluster (binuclear cluster) family; null mutant is sensitive to caffeine","termid":"PBO:0085912"}


id: GO:0003994
data:
  {"annotated_genes":["SJAG_03588","SJAG_01630"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[73514,74125],"is_not":false,"summary":null,"term":"GO:0003994"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: citrate = isocitrate. The reaction occurs in two steps: (1) citrate = cis-aconitate + H2O, (2) cis-aconitate + H2O = isocitrate. This reaction is the interconversion of citrate and isocitrate via the labile, enzyme-bound intermediate cis-aconitate. Water is removed from one part of the citrate molecule and added back to a different atom to form isocitrate.","definition_xrefs":["EC:4.2.1.3","GOC:pde","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01630":null,"SJAG_03588":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"aconitate hydratase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-70971","GO:0052632","MetaCyc:RXN-14047","Reactome:R-HSA-5690911","RHEA:10336"],"synonyms":[{"name":"aconitase activity","type":"exact"},{"name":"cis-aconitase activity","type":"related"},{"name":"citrate hydro-lyase activity","type":"broad"},{"name":"citrate(isocitrate) hydro-lyase (cis-aconitate-forming)","type":"related"},{"name":"citrate(isocitrate) hydro-lyase activity","type":"related"}],"termid":"GO:0003994","terms_by_termid":{"GO:0003994":null}}


id: SO:0000410
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A binding site that, in the molecule, interacts selectively and non-covalently with polypeptide molecules.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"binding_site","termid":"SO:0000409"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein_binding_site","synonyms":[{"name":"INSDC_feature:protein_bind","type":"exact"},{"name":"protein binding site","type":"exact"}],"termid":"SO:0000410"}


id: MONDO:0013416
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any age-related macular degeneration in which the cause of the disease is a mutation in the ARMS2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"age-related macular degeneration","termid":"MONDO:0005150"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"age related macular degeneration 8","secondary_identifiers":["UMLS:C3151070","OMIM:613778","DOID:0110020","MEDGEN:462420"],"synonyms":[{"name":"ARMD8","type":"exact"},{"name":"ARMS2 age-related macular degeneration","type":"exact"},{"name":"age related macular degeneration type 8","type":"exact"},{"name":"age-related macular degeneration caused by mutation in ARMS2","type":"exact"},{"name":"macular Degeneration, age-related, type 8","type":"exact"},{"name":"macular degeneration, age-related, 8","type":"related"}],"termid":"MONDO:0013416","xrefs":{"Monarch":{"xref_id":"0013416"}}}


id: PBO:0062683
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 51 subfamily A member 4","termid":"PBO:0062683"}


id: MONDO:0800375
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"DEND syndrome","termid":"MONDO:0019207"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005015"},{"rel_name":"is_a","termid":"MONDO:0019254"},{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0005015","MONDO:0005066","MONDO:0004335","MONDO:0019254","MONDO:0037792"],"is_obsolete":false,"name":"developmental delay, epilepsy, and neonatal diabetes 1","secondary_identifiers":["MEDGEN:1709191","UMLS:C5394597"],"synonyms":[{"name":"DEND1","type":"exact"}],"termid":"MONDO:0800375","xrefs":{"Monarch":{"xref_id":"0800375"}}}


id: GO:1900918
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of octadecene metabolic process.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of olefin metabolic process","termid":"GO:1900909"},{"relation_name":"is_a","term_name":"regulation of octadecene metabolic process","termid":"GO:1900917"},{"relation_name":"negatively_regulates","term_name":"octadecene metabolic process","termid":"GO:1900681"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of octadecene metabolic process","synonyms":[{"name":"down regulation of octadecene metabolic process","type":"exact"},{"name":"down regulation of octadecene metabolism","type":"related"},{"name":"down-regulation of octadecene metabolic process","type":"exact"},{"name":"down-regulation of octadecene metabolism","type":"related"},{"name":"downregulation of octadecene metabolic process","type":"exact"},{"name":"downregulation of octadecene metabolism","type":"related"},{"name":"inhibition of octadecene metabolic process","type":"narrow"},{"name":"inhibition of octadecene metabolism","type":"narrow"},{"name":"negative regulation of octadecene metabolism","type":"related"}],"termid":"GO:1900918"}


id: MONDO:0015207
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A esophageal malformation that is not part of a larger syndrome.","definition_xrefs":["MONDO:patterns/isolated"],"gene_count":0,"genotype_count":0,"name":"obsolete non-syndromic esophageal malformation (obsolete MONDO:0015207)","secondary_identifiers":["Orphanet:108959"],"synonyms":[{"name":"isolated esophageal malformation","type":"exact"},{"name":"nonsyndromic esophageal malformation","type":"exact"}],"termid":"MONDO:0015207","xrefs":{"Monarch":{"xref_id":"0015207"}}}


id: PBO:0052674
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 8 pseudogene 42","termid":"PBO:0052674"}


id: PR:Q9P6I4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC1198.06c gene.","definition_xrefs":["UniProtKB:Q9P6I4","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mannan endo-1,6-alpha-mannosidase C1198.06c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1198.06c","synonyms":[{"name":"Spom972h-SPBC1198.06c","type":"exact"},{"name":"endo-alpha-1->6-D-mannanase C1198.06c (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P6I4"}


id: GO:0018390
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The methyl esterification of peptidyl-glutamic acid or peptidyl-glutamine to form the derivative glutamic acid 5-methyl ester.","definition_xrefs":["RESID:AA0072"],"gene_count":0,"genotype_count":0,"name":"obsolete peptidyl-L-glutamic acid 5-methyl ester biosynthetic process from peptidyl-glutamic acid or peptidyl-glutamine (obsolete GO:0018390)","synonyms":[{"name":"peptidyl-L-glutamic acid 5-methyl ester anabolism from peptidyl-glutamic acid or peptidyl-glutamine","type":"exact"},{"name":"peptidyl-L-glutamic acid 5-methyl ester formation from peptidyl-glutamic acid or peptidyl-glutamine","type":"exact"},{"name":"peptidyl-L-glutamic acid 5-methyl ester synthesis from peptidyl-glutamic acid or peptidyl-glutamine","type":"exact"}],"termid":"GO:0018390"}


id: PBO:0059304
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L50","termid":"PBO:0059304"}


id: PBO:0028279
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_localization_to_pericentric_heterochromatin","termid":"PBO:0028279"}


id: MONDO:0044264
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete radial loop, plain, on right index finger (obsolete MONDO:0044264)","secondary_identifiers":["OMIM:312200"],"synonyms":[{"name":"radial loop, plain, ON right index finger","type":"related"}],"termid":"MONDO:0044264","xrefs":{"Monarch":{"xref_id":"0044264"}}}


id: PBO:0074152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 35 member E1 pseudogene 1","termid":"PBO:0074152"}


id: PBO:0071306
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L26 pseudogene 29","termid":"PBO:0071306"}


id: GO:0009738
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals generated by the binding of the plant hormone abscisic acid (ABA) to a receptor, and ending with modulation of a cellular process, e.g. transcription.","definition_xrefs":["GOC:sm","PMID:24269821","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hormone-mediated signaling pathway","termid":"GO:0009755"},{"relation_name":"part_of","term_name":"cellular response to abscisic acid stimulus","termid":"GO:0071215"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"abscisic acid-activated signaling pathway","synonyms":[{"name":"ABA signal transduction","type":"exact"},{"name":"ABA signaling","type":"exact"},{"name":"abscisic acid mediated signalling","type":"exact"},{"name":"abscisic acid signal transduction","type":"related"},{"name":"abscisic acid-mediated signaling pathway","type":"related"}],"termid":"GO:0009738"}


id: GO:0007533
data:
  {"annotated_genes":["SJAG_01495","SJAG_03006","SJAG_01601","SJAG_02079","SJAG_03221","SJAG_01419","SJAG_00769","SJAG_01677","SJAG_00247","SJAG_01068","SJAG_02319","SJAG_02401","SJAG_02724","SJAG_00293","SJAG_03097","SJAG_00757","SJAG_00320","SJAG_00399","SJAG_05239","SJAG_02460","SJAG_00073","SJAG_02556","SJAG_02226","SJAG_03997","SJAG_01410","SJAG_01076","SJAG_01465","SJAG_02828"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[93007,96981,99390],"is_not":false,"summary":null,"term":"GO:0007533"},{"annotations":[119245,93718,88249,116925,117236,99451,91564,116597],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0007535"},{"annotations":[115409,117189,99452,96509,89488,119164,89616,106997,110672,88250,106431,108880,97752,100921,111195],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0007534"},{"annotations":[103567,94410,103298,108881],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071515"},{"annotations":[93683],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071171"}]},"cv_name":"biological_process","definition":"The conversion of a single-cell organism from one mating type to another by the precise replacement of a DNA sequence at the expressed mating type locus with a copy of a sequence from a donor locus.","definition_xrefs":["PMID:9928492"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mating type determination","termid":"GO:0007531"},{"relation_name":"is_a","term_name":"reproductive process in single-celled organism","termid":"GO:0022413"}],"gene_count":28,"genes_by_uniquename":{"SJAG_00073":null,"SJAG_00247":null,"SJAG_00293":null,"SJAG_00320":null,"SJAG_00399":null,"SJAG_00757":null,"SJAG_00769":null,"SJAG_01068":null,"SJAG_01076":null,"SJAG_01410":null,"SJAG_01419":null,"SJAG_01465":null,"SJAG_01495":null,"SJAG_01601":null,"SJAG_01677":null,"SJAG_02079":null,"SJAG_02226":null,"SJAG_02319":null,"SJAG_02401":null,"SJAG_02460":null,"SJAG_02556":null,"SJAG_02724":null,"SJAG_02828":null,"SJAG_03006":null,"SJAG_03097":null,"SJAG_03221":null,"SJAG_03997":null,"SJAG_05239":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mating type switching","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"mating type switching and recombination","type":"related"}],"termid":"GO:0007533","terms_by_termid":{"GO:0007533":null,"GO:0007534":null,"GO:0007535":null,"GO:0071171":null,"GO:0071515":null}}


id: GO:1901403
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of tetrapyrrole metabolic process.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of metabolic process","termid":"GO:0009893"},{"relation_name":"is_a","term_name":"regulation of tetrapyrrole metabolic process","termid":"GO:1901401"},{"relation_name":"positively_regulates","term_name":"tetrapyrrole metabolic process","termid":"GO:0033013"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0033013"},{"rel_name":"positively_regulates","termid":"GO:0033013"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0033013"],"is_obsolete":false,"name":"positive regulation of tetrapyrrole metabolic process","synonyms":[{"name":"activation of tetrapyrrole metabolic process","type":"narrow"},{"name":"activation of tetrapyrrole metabolism","type":"exact"},{"name":"positive regulation of tetrapyrrole metabolism","type":"exact"},{"name":"up regulation of tetrapyrrole metabolic process","type":"exact"},{"name":"up regulation of tetrapyrrole metabolism","type":"exact"},{"name":"up-regulation of tetrapyrrole metabolic process","type":"exact"},{"name":"up-regulation of tetrapyrrole metabolism","type":"exact"},{"name":"upregulation of tetrapyrrole metabolic process","type":"exact"},{"name":"upregulation of tetrapyrrole metabolism","type":"exact"}],"termid":"GO:1901403"}


id: GO:0030324
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the lung over time, from its formation to the mature structure. In all air-breathing vertebrates the lungs are developed from the ventral wall of the oesophagus as a pouch which divides into two sacs. In amphibians and many reptiles the lungs retain very nearly this primitive sac-like character, but in the higher forms the connection with the esophagus becomes elongated into the windpipe and the inner walls of the sacs become more and more divided, until, in the mammals, the air spaces become minutely divided into tubes ending in small air cells, in the walls of which the blood circulates in a fine network of capillaries. In mammals the lungs are more or less divided into lobes, and each lung occupies a separate cavity in the thorax.","definition_xrefs":["UBERON:0002048","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"animal organ development","termid":"GO:0048513"},{"relation_name":"part_of","term_name":"respiratory tube development","termid":"GO:0030323"},{"relation_name":"part_of","term_name":"respiratory system development","termid":"GO:0060541"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lung development","termid":"GO:0030324"}


id: FYECO:0000142
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which adenine was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ ade","synonyms":[{"name":"+ adenine","type":"related"}],"termid":"FYECO:0000142"}


id: GO:1904136
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of convergent extension involved in notochord morphogenesis.","definition_xrefs":["GOC:dph","GO_REF:0000058","GOC:TermGenie","PMID:24892953"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of convergent extension involved in gastrulation","termid":"GO:1904103"},{"relation_name":"regulates","term_name":"convergent extension involved in notochord morphogenesis","termid":"GO:1904126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of convergent extension involved in notochord morphogenesis","termid":"GO:1904136"}


id: PBO:0068359
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNF139 divergent transcript","termid":"PBO:0068359"}


id: GO:2000154
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of flagellar cell motility.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of flagellar cell motility (obsolete GO:2000154)","synonyms":[{"name":"negative regulation of flagellar cell motility","type":"exact"}],"termid":"GO:2000154"}


id: PBO:0035881
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_rate_of_protein_transport_during_vegetative_growth","termid":"PBO:0035881"}


id: PBO:0070565
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 31","termid":"PBO:0070565"}


id: PBO:0049802
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypocretin receptor 1","termid":"PBO:0049802"}


id: PBO:0028015
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cytoplasmic_microtubules","termid":"PBO:0028015"}


id: PBO:0040753
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bradykinin receptor B2","termid":"PBO:0040753"}


id: PBO:0050689
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family A (Hsp70) member 8 pseudogene 16","termid":"PBO:0050689"}


id: FYPO:0002256
data:
  {"alleles_by_uniquename":{"SJAG_01745:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01745","name":"lem2delta","uniquename":"SJAG_01745:allele-1"},"SJAG_01906:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01906","name":"nem1delta","uniquename":"SJAG_01906:allele-1"},"SJAG_02763:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02763","name":"ned1delta","uniquename":"SJAG_02763:allele-1"},"SJAG_02763:allele-2":{"allele_type":"amino_acid_mutation","description":"D422E,D424E","gene_uniquename":"SJAG_02763","name":"ned1cat","synonyms":[{"name":"Catalytic mutant","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-2"},"SJAG_02763:allele-4":{"allele_type":"amino_acid_mutation","description":"S235E; S651E","gene_uniquename":"SJAG_02763","name":"ned1S235E/S651E","synonyms":[{"name":"phosphomimetic","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-4"},"SJAG_02763:allele-5":{"allele_type":"amino_acid_mutation","description":"S499E; 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id: PBO:0081488
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 384","termid":"PBO:0081488"}


id: PBO:0065938
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rac GTPase activating protein 1","termid":"PBO:0065938"}


id: GO:0008709
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: cholate + NAD+ = -3alpha,12-alpha-dihydroxy-7-oxo--5beta-cholanate + H+ + NADH.","definition_xrefs":["RHEA:19409"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0033764"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"cholate 7-alpha-dehydrogenase (NAD+) activity","secondary_identifiers":["EC:1.1.1.159","KEGG_REACTION:R02792","MetaCyc:7-ALPHA-HYDROXYSTEROID-DEH-RXN"],"synonyms":[{"name":"7-alpha-hydroxysteroid dehydrogenase activity","type":"broad"},{"name":"7alpha-HSDH","type":"related"},{"name":"7alpha-hydroxy steroid dehydrogenase activity","type":"broad"},{"name":"7alpha-hydroxysteroid dehydrogenase activity","type":"broad"},{"name":"7alpha-hydroxysteroid:NAD+ 7-oxidoreductase activity","type":"broad"}],"termid":"GO:0008709"}


id: PBO:0002576
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human moe1","termid":"PBO:0002576"}


id: GO:0062078
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a TSC1-TSC2 complex.","definition_xrefs":["PMID:28561066"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex binding","termid":"GO:0044877"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"TSC1-TSC2 complex binding","synonyms":[{"name":"tuberin sclerosis complex binding","type":"exact"},{"name":"tuberin-hamartin complex binding","type":"exact"}],"termid":"GO:0062078"}


id: PBO:0040923
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"basonuclin 1","termid":"PBO:0040923"}


id: PBO:0117409
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZDHHC4 pseudogene 1","termid":"PBO:0117409"}


id: GO:0102154
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2,4,4',6-tetrahydroxydibenzoylmethane + UDP-alpha-D-glucose = 8C-glucosyl-2-hydroxynaringenin + UDP + 2 H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 8C-naringenin dibenzoylmethane tautomer glucosyltransferase activity (obsolete GO:0102154)","termid":"GO:0102154"}


id: GO:0035753
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involved in sustaining the fidelity and copy number of DNA trinucleotide repeats. DNA trinucleotide repeats are naturally occurring runs of three base-pairs.","definition_xrefs":["SO:0000291","GOC:rb","PMID:21347277"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maintenance of DNA repeat elements","termid":"GO:0043570"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006259","GO:0008150"],"is_obsolete":false,"name":"maintenance of DNA trinucleotide repeats","termid":"GO:0035753"}


id: MONDO:0859221
data:
  {"annotated_genes":["SJAG_02464"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87587],"is_not":false,"summary":null,"term":"MONDO:0859221"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02464":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"Yoon-Bellen neurodevelopmental syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:619701","DOID:0070468","MEDGEN:1794276","UMLS:C5562066"],"termid":"MONDO:0859221","terms_by_termid":{"MONDO:0859221":null},"xrefs":{"Monarch":{"xref_id":"0859221"}}}


id: GO:1903253
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of hercynylcysteine sulfoxide.","definition_xrefs":["PMID:24828577","GOC:TermGenie","GO_REF:0000068"],"gene_count":0,"genotype_count":0,"name":"obsolete hercynylcysteine sulfoxide biosynthetic process (obsolete GO:1903253)","synonyms":[{"name":"hercynylcysteine sulfoxide anabolism","type":"exact"},{"name":"hercynylcysteine sulfoxide biosynthesis","type":"exact"},{"name":"hercynylcysteine sulfoxide formation","type":"exact"},{"name":"hercynylcysteine sulfoxide synthesis","type":"exact"}],"termid":"GO:1903253"}


id: PBO:0086607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; gene expression induced in response to ketoconazole; YPL272C is not an essential gene","termid":"PBO:0086607"}


id: PBO:0067908
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 210","termid":"PBO:0067908"}


id: GO:0006094
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol.","definition_xrefs":["MetaCyc:GLUCONEO-PWY"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucose metabolic process","termid":"GO:0006006"},{"relation_name":"is_a","term_name":"hexose biosynthetic process","termid":"GO:0019319"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0005975","GO:0008150"],"is_obsolete":false,"name":"gluconeogenesis","secondary_identifiers":["Wikipedia:Gluconeogenesis","Reactome:R-HSA-70263"],"synonyms":[{"name":"glucose biosynthesis","type":"exact"},{"name":"glucose biosynthetic process","type":"exact"}],"termid":"GO:0006094"}


id: GO:0061372
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of molecular signals initiated by the binding of a member of the activin family to its receptor on the surface of a target cell, and contributing to the process of heart jogging.","definition_xrefs":["GOC:dph","GOC:mtg_heart","GOC:signaling"],"gene_count":0,"genotype_count":0,"name":"obsolete activin receptor signaling pathway involved in heart jogging (obsolete GO:0061372)","synonyms":[{"name":"activin receptor signalling pathway involved in heart jogging","type":"exact"}],"termid":"GO:0061372"}


id: PBO:0086976
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Regulatory subunit of the cyclic AMP-dependent protein kinase (PKA); PKA is a component of a signaling pathway that controls a variety of cellular processes, including metabolism, cell cycle, stress response, stationary phase, and sporulation","termid":"PBO:0086976"}


id: FYPO:0000280
data:
  {"alleles_by_uniquename":{"SJAG_00514:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00514","name":"scd1delta","uniquename":"SJAG_00514:allele-1"},"SJAG_00993:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00993","name":"byr1delta","uniquename":"SJAG_00993:allele-1"},"SJAG_01718:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01718","name":"byr2delta","uniquename":"SJAG_01718:allele-1"},"SJAG_01794:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01794","name":"scd2delta","uniquename":"SJAG_01794:allele-1"},"SJAG_02379:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02379","name":"gap1delta","uniquename":"SJAG_02379:allele-1"},"SJAG_02486:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02486","name":"ste6delta","uniquename":"SJAG_02486:allele-1"},"SJAG_02592:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02592","name":"sty1delta","uniquename":"SJAG_02592:allele-1"},"SJAG_02923:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02923","name":"spk1delta","uniquename":"SJAG_02923:allele-1"},"SJAG_03453:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03453","name":"ras1delta","uniquename":"SJAG_03453:allele-1"},"SJAG_04009:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04009","name":"ste11delta","uniquename":"SJAG_04009:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[119567,119604,119610,119611,119615,119618,119620,119621,119634,119636],"is_not":false,"summary":null,"term":"FYPO:0000280"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which conjugation does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mating","termid":"FYPO:0000031"},{"relation_name":"is_a","term_name":"abolished biological 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id: SO:0001326
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"7_methylguanosine is a modified guanosine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_guanosine","termid":"SO:0001276"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"seven_methylguanosine","secondary_identifiers":["RNAMOD:031"],"synonyms":[{"name":"7-methylguanosine","type":"exact"},{"name":"m7G","type":"exact"},{"name":"seven methylguanosine","type":"exact"}],"termid":"SO:0001326"}


id: GO:1904389
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires the specialized features of a rod bipolar cell.","definition_xrefs":["GO_REF:0000086","PMID:16914133","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinal bipolar neuron differentiation","termid":"GO:0060040"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"rod bipolar cell differentiation","termid":"GO:1904389"}


id: MONDO:1011637
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system disorder, non-human animal","termid":"MONDO:1011336"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"juvenile idiopathic epilepsy, non-human animal","secondary_identifiers":["OMIA:001757"],"termid":"MONDO:1011637","xrefs":{"Monarch":{"xref_id":"1011637"}}}


id: PBO:0081156
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein, FOG family member 1","termid":"PBO:0081156"}


id: GO:0034795
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: cyclohexane + O2 + NAD(P)H + H+ = cyclohexanol + NAD(P)+ + H2O.","definition_xrefs":["UM-BBD_reactionID:r1059"],"gene_count":0,"genotype_count":0,"name":"obsolete cyclohexane monooxygenase activity (obsolete GO:0034795)","synonyms":[{"name":"butane monooxygenase activity","type":"related"},{"name":"cyclohexane hydroxylase activity","type":"exact"}],"termid":"GO:0034795"}


id: PATO:0000492
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000492 absolute rhythym value (obsolete PATO:0000492)","termid":"PATO:0000492"}


id: PBO:0054614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2019","termid":"PBO:0054614"}


id: PBO:0079109
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TSC22 domain family member 4","termid":"PBO:0079109"}


id: PBO:0113526
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Vacuolar aspartyl protease (proteinase A); required for post-translational precursor maturation of vacuolar proteinases; important for protein turnover after oxidative damage; plays a protective role in acetic acid induced apoptosis; synthesized as a zymogen, self-activates; targeted to vacuole via Vps10p-dependent endosomal vacuolar protein sorting pathway","termid":"PBO:0113526"}


id: PBO:0005679
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CBF1/Su(H)/LAG-1 family transcription factor Cbf12","termid":"PBO:0005679"}


id: MONDO:0009216
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Fanconi-Bickel glycogenosis (FBG) is a rare glycogen storage disease characterized by hepatorenal glycogen accumulation, severe renal tubular dysfunction and impaired glucose and galactose metabolism.","definition_xrefs":["Orphanet:2088"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"metabolic disease","termid":"MONDO:0005066"},{"relation_name":"excluded_subClassOf","term_name":"disorder of carbohydrate transmembrane transport and absorption","termid":"MONDO:0017706"},{"relation_name":"excluded_subClassOf","term_name":"glucose transport disorder","termid":"MONDO:0019226"},{"relation_name":"excluded_subClassOf","term_name":"obsolete nephropathy secondary to a storage or other metabolic disease (obsolete MONDO:0019743)","termid":"MONDO:0019743"},{"relation_name":"is_a","term_name":"disorder of glycogen metabolism","termid":"MONDO:0002412"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0037792","MONDO:0005066"],"is_obsolete":false,"name":"glycogen storage disease due to GLUT2 deficiency","secondary_identifiers":["GARD:2268","icd11.foundation:426701963","MEDGEN:501176","OMIM:227810","UMLS:C3495427","DOID:0070562","SCTID:61598006"],"synonyms":[{"name":"Bickel-Fanconi glycogenosis","type":"exact"},{"name":"FBS","type":"exact"},{"name":"Fanconi Bickel syndrome","type":"exact"},{"name":"Fanconi syndrome with intestinal malabsorption and galactose intolerance","type":"exact"},{"name":"Fanconi-Bickel disease","type":"exact"},{"name":"Fanconi-Bickel syndrome","type":"exact"},{"name":"GLUT2 deficiency","type":"related"},{"name":"GSD due to GLUT2 deficiency","type":"exact"},{"name":"GSD type 11","type":"related"},{"name":"GSD type XI","type":"related"},{"name":"glycogen storage disease 11","type":"related"},{"name":"glycogen storage disease XI","type":"related"},{"name":"glycogen storage disease due to GLUT2 deficiency","type":"exact"},{"name":"glycogen storage disease type 11","type":"related"},{"name":"glycogen storage disease type XI","type":"related"},{"name":"glycogenosis Fanconi EXACT","type":"related"},{"name":"glycogenosis due to GLUT2 deficiency","type":"exact"},{"name":"glycogenosis, Fanconi type","type":"related"},{"name":"hepatic glycogenosis with Fanconi nephropathy","type":"related"},{"name":"hepatic glycogenosis with amino aciduria and glucosuria","type":"related"},{"name":"hepatorenal glycogenosis with renal Fanconi syndrome","type":"related"},{"name":"hepatorenal glycogenosis with renal fanconi syndrome","type":"related"},{"name":"pseudo-phlorizin diabetes","type":"related"}],"termid":"MONDO:0009216","xrefs":{"Monarch":{"xref_id":"0009216"}}}


id: PBO:0075824
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal sequence receptor subunit 1","termid":"PBO:0075824"}


id: FYPO:0005255
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a carboxypeptidase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal peptidase activity","termid":"FYPO:0000666"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000707","FYPO:0000661","FYPO:0001985","FYPO:0000654"],"is_obsolete":false,"name":"abnormal carboxypeptidase activity","termid":"FYPO:0005255"}


id: MONDO:0006298
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An extragonadal malignant germ cell tumor that arises from the mediastinum. This category includes seminoma, embryonal carcinoma, yolk sac tumor, choriocarcinoma, mixed germ cell tumors, and immature malignant teratoma.","definition_xrefs":["NCIT:C6446"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extragonadal germ cell cancer","termid":"MONDO:0003113"},{"relation_name":"is_a","term_name":"mediastinal cancer","termid":"MONDO:0005843"},{"relation_name":"is_a","term_name":"mediastinal germ cell tumor","termid":"MONDO:0021067"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"mediastinal malignant germ cell tumor","secondary_identifiers":["MEDGEN:277334","UMLS:C1334597","EFO:1000366","SCTID:713293002"],"synonyms":[{"name":"malignant germ cell neoplasm of mediastinum","type":"related"},{"name":"malignant germ cell neoplasm of the mediastinum","type":"related"},{"name":"malignant germ cell tumor of mediastinum","type":"related"},{"name":"malignant germ cell tumor of the mediastinum","type":"related"},{"name":"malignant germ cell tumour of mediastinum","type":"related"},{"name":"malignant germ cell tumour of the mediastinum","type":"related"},{"name":"malignant mediastinal germ cell neoplasm","type":"related"},{"name":"malignant mediastinal germ cell tumor","type":"exact"},{"name":"malignant mediastinal germ cell tumour","type":"exact"},{"name":"mediastinal germ cell tumor, malignant","type":"exact"},{"name":"mediastinal malignant germ cell tumor","type":"exact"},{"name":"thymic malignant germ cell tumor","type":"exact"},{"name":"thymic malignant germ cell tumour","type":"exact"}],"termid":"MONDO:0006298","xrefs":{"Monarch":{"xref_id":"0006298"}}}


id: PR:O94291
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A sorting nexin-3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorting nexin-3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC887.06c","secondary_identifiers":["UniProtKB:O94291"],"synonyms":[{"name":"SPBC887.06c","type":"related"},{"name":"Spom972h-SNX3","type":"exact"},{"name":"grd19","type":"related"}],"termid":"PR:O94291"}


id: PBO:0038921
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adhesion G protein-coupled receptor G3","termid":"PBO:0038921"}


id: PBO:0082828
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Conserved protein involved in autophagy and the Cvt pathway; undergoes conjugation with Atg12p to form a complex involved in Atg8p lipidation; Atg5p-Atg12p conjugate enhances E2 activity of Atg3 by rearranging its catalytic site, also forms a complex with Atg16p; the Atg5-Atg12/Atg16 complex binds to membranes and is essential for autophagosome formation; also involved in methionine restriction extension of chronological lifespan in an autophagy-dependent manner","termid":"PBO:0082828"}


id: PBO:0065674
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PTPRT divergent transcript","termid":"PBO:0065674"}


id: PBO:0003689
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA export protein Mep33","termid":"PBO:0003689"}


id: PBO:0064573
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"porcupine O-acyltransferase","termid":"PBO:0064573"}


id: GO:0009737
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to hormone","termid":"GO:0009725"},{"relation_name":"is_a","term_name":"response to lipid","termid":"GO:0033993"},{"relation_name":"is_a","term_name":"response to alcohol","termid":"GO:0097305"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to abscisic acid","synonyms":[{"name":"response to abscisic acid stimulus","type":"exact"}],"termid":"GO:0009737"}


id: MONDO:0011448
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"familial partial lipodystrophy","termid":"MONDO:0020088"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0005066"],"is_obsolete":false,"name":"PPARG-related familial partial lipodystrophy","secondary_identifiers":["DOID:0070204","OMIM:604367","Orphanet:79083","MEDGEN:328393","UMLS:C1720861","GARD:12600"],"synonyms":[{"name":"FPLD3","type":"exact"},{"name":"PPARG-related FPLD","type":"exact"},{"name":"familial partial lipodystrophy associated with PPARG mutations","type":"related"},{"name":"familial partial lipodystrophy type 3","type":"exact"},{"name":"insulin resistance, severe, digenic","type":"related"},{"name":"lipodystrophy, familial partial, associated with Pparg mutations","type":"related"},{"name":"lipodystrophy, familial partial, type 3","type":"related"}],"termid":"MONDO:0011448","xrefs":{"Monarch":{"xref_id":"0011448"}}}


id: PBO:0039430
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin 1","termid":"PBO:0039430"}


id: MONDO:0014373
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any nephrotic syndrome in which the cause of the disease is a mutation in the EMP2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial idiopathic steroid-resistant nephrotic syndrome","termid":"MONDO:0019006"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"nephrotic syndrome, type 10","secondary_identifiers":["MEDGEN:862944","UMLS:C4014507","OMIM:615861","DOID:0080386"],"synonyms":[{"name":"EMP2 nephrotic syndrome","type":"exact"},{"name":"NPHS10","type":"related"},{"name":"nephrotic syndrome caused by mutation in EMP2","type":"exact"},{"name":"nephrotic syndrome, type 10","type":"exact"}],"termid":"MONDO:0014373","xrefs":{"Monarch":{"xref_id":"0014373"}}}


id: PBO:0085153
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nucleosome assembly factor; involved in chromatin assembly, disassembly; required for recovery after DSB repair; role in H3K56 acetylation required for expression homeostasis, buffering mRNA synthesis rate against gene dosage changes in S phase; anti-silencing protein, derepresses silent loci when overexpressed; role in regulating Ty1 transposition; relocalizes to cytosol under hypoxia; growth defect of asf1 null is functionally complemented by either human ASF1A or ASF1B","termid":"PBO:0085153"}


id: GO:0032944
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of mononuclear cell proliferation.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of leukocyte proliferation","termid":"GO:0070663"},{"relation_name":"regulates","term_name":"mononuclear cell proliferation","termid":"GO:0032943"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of mononuclear cell proliferation","synonyms":[{"name":"regulation of PBMC proliferation","type":"narrow"},{"name":"regulation of peripheral blood mononuclear cell proliferation","type":"narrow"}],"termid":"GO:0032944"}


id: PBO:0113543
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Vacuolar transporter; exports large neutral amino acids from vacuole; targeted to vacuole via AP-3 pathway; member of family of seven S. cerevisiae genes (AVT1-7) related to vesicular GABA-glycine transporters","termid":"PBO:0113543"}


id: MONDO:0019106
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete disseminated peritoneal leiomyomatosis (obsolete MONDO:0019106)","termid":"MONDO:0019106","xrefs":{"Monarch":{"xref_id":"0019106"}}}


id: PBO:0043976
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CSAG family member 2","termid":"PBO:0043976"}


id: GO:0048249
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of phosphate from one side of a membrane to the other. In high-affinity transport the transporter is able to bind the solute even if it is only present at very low concentrations.","definition_xrefs":["PMID:8709965","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphate transmembrane transporter activity","termid":"GO:0005315"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"high-affinity phosphate transmembrane transporter activity","synonyms":[{"name":"high affinity phosphate transmembrane transporter activity","type":"exact"}],"termid":"GO:0048249"}


id: MONDO:0020722
data:
  {"annotated_genes":["SJAG_01941","SJAG_02463"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86827,86828],"is_not":false,"summary":null,"term":"MONDO:0020722"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"},{"relation_name":"is_a","term_name":"nephrolithiasis, calcium oxalate","termid":"MONDO:0957318"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01941":null,"SJAG_02463":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"nephrolithiasis susceptibility caused by SLC26A1","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0080652","UMLS:C5779632","MEDGEN:1830325","OMIM:167030"],"synonyms":[{"name":"CAON","type":"related"},{"name":"nephrolithiasis, calcium oxalate","type":"related"},{"name":"urolithiasis, calcium oxalate","type":"related"}],"termid":"MONDO:0020722","terms_by_termid":{"MONDO:0020722":null},"xrefs":{"Monarch":{"xref_id":"0020722"}}}


id: PBO:0027058
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cell_wall_polysaccharide_level","termid":"PBO:0027058"}


id: GO:0051517
data:
  {"annotated_genes":["SJAG_02169"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91051],"is_not":false,"summary":null,"term":"GO:0051517"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of bipolar cell growth, polarized growth from both ends of a cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of unidimensional cell growth","termid":"GO:0051511"},{"relation_name":"is_a","term_name":"regulation of bipolar cell growth","termid":"GO:0051516"},{"relation_name":"negatively_regulates","term_name":"bipolar cell growth","termid":"GO:0042815"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02169":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of bipolar cell growth","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of bipolar cell growth","type":"exact"},{"name":"down-regulation of bipolar cell growth","type":"exact"},{"name":"downregulation of bipolar cell growth","type":"exact"},{"name":"inhibition of bipolar cell growth","type":"narrow"}],"termid":"GO:0051517","terms_by_termid":{"GO:0051517":null}}


id: PBO:0034547
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_RNA_localization_to_nucleus","termid":"PBO:0034547"}


id: PBO:0084637
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mevalonate kinase; acts in the biosynthesis of isoprenoids and sterols, including ergosterol, from mevalonate; human MVK functionally complements the lethality of the erg12 null mutation","termid":"PBO:0084637"}


id: MONDO:1012409
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"gallbladder mucocele, non-human animal","termid":"MONDO:1011780"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gallbladder mucocele, dog","secondary_identifiers":["OMIA:001524-9615"],"termid":"MONDO:1012409","xrefs":{"Monarch":{"xref_id":"1012409"}}}


id: PR:O14144
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- erv1 gene.","definition_xrefs":["UniProtKB:O14144","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial FAD-linked sulfhydryl oxidase erv1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3G6.08","synonyms":[{"name":"Spom972h-erv1","type":"exact"}],"termid":"PR:O14144"}


id: PBO:0052809
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 75","termid":"PBO:0052809"}


id: FYPO:0003687
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the nucleolus is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to nucleus during vegetative growth","termid":"FYPO:0001129"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"abnormal protein localization to nucleolus","synonyms":[{"name":"abnormal protein localisation to nucleolus","type":"exact"},{"name":"abnormal protein localization to nucleolus during mitotic cell cycle","type":"related"},{"name":"abnormal protein localization to nucleolus during vegetative growth","type":"exact"}],"termid":"FYPO:0003687"}


id: PBO:0044864
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DENN domain containing 1B","termid":"PBO:0044864"}


id: GO:0009158
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a ribonucleoside monophosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with phosphate on the sugar.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside monophosphate catabolic process","termid":"GO:0009125"},{"relation_name":"is_a","term_name":"ribonucleoside monophosphate metabolic process","termid":"GO:0009161"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"ribonucleoside monophosphate catabolic process","synonyms":[{"name":"ribonucleoside monophosphate breakdown","type":"exact"},{"name":"ribonucleoside monophosphate catabolism","type":"exact"},{"name":"ribonucleoside monophosphate degradation","type":"exact"}],"termid":"GO:0009158"}


id: MONDO:0005598
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neuroblastoma associated with increased dopamine excretion.","definition_xrefs":["EFO:0006391"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuroblastoma","termid":"MONDO:0005072"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dopaminergic neuroblastoma","secondary_identifiers":["PMID:3385588"],"termid":"MONDO:0005598","xrefs":{"Monarch":{"xref_id":"0005598"}}}


id: PBO:0042536
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDK5 regulatory subunit associated protein 3","termid":"PBO:0042536"}


id: MONDO:0003819
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A mature or immature teratoma that arises from the ovary and occurs in children.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pediatric ovarian germ cell tumor","termid":"MONDO:0003760"},{"relation_name":"is_a","term_name":"ovarian teratoma","termid":"MONDO:0005602"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"childhood teratoma of the ovary","secondary_identifiers":["NCIT:C6554","DOID:6230","MEDGEN:272466","UMLS:C1332992"],"synonyms":[{"name":"childhood ovarian teratoma","type":"exact"},{"name":"childhood teratoma of ovary","type":"exact"},{"name":"childhood teratoma of the ovary","type":"exact"},{"name":"ovarian teratoma of childhood","type":"exact"},{"name":"paediatric ovarian teratoma","type":"exact"},{"name":"paediatric teratoma of ovary","type":"exact"},{"name":"paediatric teratoma of the ovary","type":"exact"},{"name":"pediatric ovarian teratoma","type":"exact"},{"name":"pediatric teratoma of ovary","type":"exact"},{"name":"pediatric teratoma of the ovary","type":"exact"}],"termid":"MONDO:0003819","xrefs":{"Monarch":{"xref_id":"0003819"}}}


id: PBO:0065671
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PTPRS antisense RNA 1","termid":"PBO:0065671"}


id: PR:Q9USP3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ppr6 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9USP3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pentatricopeptide repeat-containing protein 6, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC11E10.04","synonyms":[{"name":"Spom972h-ppr6","type":"exact"}],"termid":"PR:Q9USP3"}


id: GO:0102287
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 4-coumaryl-CoA + 3-oxooctanoyl-CoA + H2O = 4-coumaroylhexanoylmethane + 2 coenzyme A + carbon dioxide.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 4-coumaroylhexanoylmethane synthase activity (obsolete GO:0102287)","termid":"GO:0102287"}


id: PBO:0064565
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paraoxonase 3","termid":"PBO:0064565"}


id: GO:0005477
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of pyruvate from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Secondary active transporters include symporters and antiporters.","definition_xrefs":["GOC:mtg_transport"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secondary active monocarboxylate transmembrane transporter activity","termid":"GO:0015355"},{"relation_name":"is_a","term_name":"pyruvate transmembrane transporter activity","termid":"GO:0050833"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"pyruvate secondary active transmembrane transporter activity","synonyms":[{"name":"pyruvate carrier activity","type":"related"}],"termid":"GO:0005477"}


id: PBO:0070835
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L13a pseudogene 14","termid":"PBO:0070835"}


id: PBO:0043061
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chordin like 2","termid":"PBO:0043061"}


id: MONDO:0011076
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare genetic skeletal muscle disease characterized by abnormal chimeric aggregates of desmin and other cytoskeletal proteins and granulofilamentous material at the ultrastructural level in muscle biopsies and variable clinical/ myopathological features, age of disease onset and rate of disease progression. Patients present with bilateral skeletal muscle weakness that starts in distal leg muscles and spreads proximally, sometimes involving trunk, neck flexors and facial muscles and often cardiomyopathy manifested by conduction blocks, arrhythmias, chronic heart failure, and sometimes tachyarrhythmia. Weakness eventually leads to wheelchair dependence. Respiratory insufficiency can be a major cause of disability and death, beginning with nocturnal hyperventilation with oxygen desaturation and progressing to daytime respiratory failure.","definition_xrefs":["Orphanet:98909"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"myopathy","termid":"MONDO:0005336"},{"relation_name":"excluded_subClassOf","term_name":"autosomal recessive limb-girdle muscular dystrophy","termid":"MONDO:0015152"},{"relation_name":"excluded_subClassOf","term_name":"autosomal dominant distal myopathy","termid":"MONDO:0016108"},{"relation_name":"excluded_subClassOf","term_name":"hereditary inclusion-body myopathy","termid":"MONDO:0016112"},{"relation_name":"excluded_subClassOf","term_name":"qualitative or quantitative defects of desmin","termid":"MONDO:0016187"},{"relation_name":"excluded_subClassOf","term_name":"familial restrictive cardiomyopathy","termid":"MONDO:0016340"},{"relation_name":"is_a","term_name":"congenital nervous system disorder","termid":"MONDO:0002320"},{"relation_name":"is_a","term_name":"qualitative or quantitative defects of desmin","termid":"MONDO:0016187"},{"relation_name":"is_a","term_name":"familial dilated cardiomyopathy","termid":"MONDO:0016333"},{"relation_name":"is_a","term_name":"myofibrillar myopathy","termid":"MONDO:0018943"},{"relation_name":"is_a","term_name":"hereditary neuromuscular disease","termid":"MONDO:0100546"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005336","MONDO:0002320","MONDO:0005267"],"is_obsolete":false,"name":"myofibrillar myopathy 1","secondary_identifiers":["GARD:16870","Orphanet:363543","MEDGEN:330449","OMIM:601419","OMIM:615325","DOID:0110286","UMLS:C1832370","DOID:0080092"],"synonyms":[{"name":"CMD1F and LGMD1D","type":"related"},{"name":"CMD1F and LGMD1D, formerly","type":"related"},{"name":"DES autosomal recessive limb-girdle muscular dystrophy","type":"exact"},{"name":"DES myofibrillar myopathy (disease)","type":"exact"},{"name":"IBM1","type":"related"},{"name":"MFM1","type":"related"},{"name":"arrhythmogenic right ventricular cardiomyopathy 7","type":"related"},{"name":"arrhythmogenic right ventricular cardiomyopathy 7, formerly","type":"related"},{"name":"arrhythmogenic right ventricular dysplasia, familial, 7","type":"related"},{"name":"arrhythmogenic right ventricular dysplasia, familial, 7, formerly","type":"related"},{"name":"autosomal recessive limb-girdle muscular dystrophy caused by mutation in DES","type":"exact"},{"name":"autosomal recessive limb-girdle muscular dystrophy type 2R","type":"exact"},{"name":"cardiomyopathy, dilated, 1F and limb-girdle muscular dystrophy type 1D","type":"related"},{"name":"cardiomyopathy, dilated, 1F and limb-girdle muscular dystrophy type 1D, formerly","type":"related"},{"name":"cardiomyopathy, dilated, with conduction defect and muscular dystrophy","type":"related"},{"name":"desmin-related myofibrillar myopathy","type":"exact"},{"name":"desmin-related myopathy","type":"related"},{"name":"desmin-related myopathy with arrhythmogenic right ventricular cardiomyopathy","type":"related"},{"name":"desminopathy","type":"exact"},{"name":"desminopathy, primary","type":"related"},{"name":"inclusion body myopathy 1, autosomal dominant","type":"related"},{"name":"inclusion body myopathy 1, autosomal dominant, formerly","type":"related"},{"name":"myofibrillar myopathy (disease) caused by mutation in DES","type":"exact"},{"name":"myofibrillar myopathy 1","type":"exact"},{"name":"myofibrillar myopathy type 1","type":"exact"},{"name":"myofibrillar myopathy with arrhythmogenic right ventricular cardiomyopathy","type":"related"},{"name":"myopathy, myofibrillar, 1","type":"related"},{"name":"myopathy, myofibrillar, desmin-related","type":"related"},{"name":"myopathy, myofibrillar, type 1","type":"exact"}],"termid":"MONDO:0011076","xrefs":{"Monarch":{"xref_id":"0011076"}}}


id: GO:0003174
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the mitral valve over time, from its formation to the mature structure.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"atrioventricular valve development","termid":"GO:0003171"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mitral valve development","termid":"GO:0003174"}


id: MONDO:0004752
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare neurofibroma that affects the heart.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heart cancer","termid":"MONDO:0001340"},{"relation_name":"is_a","term_name":"neurofibroma","termid":"MONDO:0016755"},{"relation_name":"is_a","term_name":"peripheral nervous system cancer","termid":"MONDO:0021089"},{"relation_name":"is_a","term_name":"malignant glioma","termid":"MONDO:0100342"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0005267","MONDO:0004992"],"is_obsolete":false,"name":"neurofibroma of the heart","secondary_identifiers":["MEDGEN:242755","DOID:9300","NCIT:C5359","UMLS:C1096349"],"synonyms":[{"name":"Cardiac neurofibroma","type":"exact"},{"name":"heart neurofibroma","type":"exact"},{"name":"neurofibroma of heart","type":"exact"},{"name":"neurofibroma of the heart","type":"exact"}],"termid":"MONDO:0004752","xrefs":{"Monarch":{"xref_id":"0004752"}}}


id: PBO:0076935
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trefoil factor 3","termid":"PBO:0076935"}


id: PBO:0088299
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DUF4646 family conserved fungal protein","termid":"PBO:0088299"}


id: PBO:0050059
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"major histocompatibility complex, class I, Z (pseudogene)","termid":"PBO:0050059"}


id: MOD:00886
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-tryptophan residue to 6'-chloro-L-tryptophan.","definition_xrefs":["RESID:AA0180","PubMed:9033387","Unimod:936#W"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monochlorinated L-tryptophan","termid":"MOD:01913"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6'-chloro-L-tryptophan","synonyms":[{"name":"(2S)-2-amino-3-(6-chloro-1H-indol-3-yl)propanoic acid","type":"exact"},{"name":"6'-ClTrp","type":"exact"},{"name":"6'-chloro-L-tryptophan","type":"exact"},{"name":"MOD_RES 6'-chlorotryptophan","type":"exact"}],"termid":"MOD:00886"}


id: MONDO:1010426
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Subvalvular aortic stenosis that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"subvalvular aortic stenosis, non-human animal","termid":"MONDO:1010007"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"subvalvular aortic stenosis, dog","secondary_identifiers":["OMIA:000052-9615"],"termid":"MONDO:1010426","xrefs":{"Monarch":{"xref_id":"1010426"}}}


id: PBO:0062905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oxidative stress responsive kinase 1","termid":"PBO:0062905"}


id: MONDO:0018652
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete biological anomaly without phenotypic characterization (obsolete MONDO:0018652)","secondary_identifiers":["Orphanet:447874"],"termid":"MONDO:0018652","xrefs":{"Monarch":{"xref_id":"0018652"}}}


id: MONDO:0033664
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An autosomal recessive multisystem disorder characterized by neurologic, gastrointestinal, and secretory dysfunction. Affected individuals present at birth with hypotonia, feeding difficulties, mild dysmorphic features, and sensorineural hearing loss. They show poor overall growth associated with gastrointestinal anomalies such as gastroesophageal reflux or midgut malrotation, as well as profound global developmental delay with inability to sit or speak. Tear, sweat, and saliva production is also impaired, causing dry mouth and recurrent bronchial mucus plugging. Some of the clinical features are reminiscent of cystic fibrosis.","definition_xrefs":["PMID:30740830","OMIM:619080","PMID:32754646"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Kilquist syndrome","secondary_identifiers":["MEDGEN:1742639","UMLS:C5436756"],"synonyms":[{"name":"KILQS","type":"exact"}],"termid":"MONDO:0033664","xrefs":{"Monarch":{"xref_id":"0033664"}}}


id: GO:0046854
data:
  {"annotated_genes":["SJAG_02613","SJAG_01863","SJAG_04537","SJAG_03170","SJAG_00053","SJAG_00296","SJAG_05330","SJAG_04930","SJAG_00114","SJAG_04545","SJAG_01571","SJAG_03131","SJAG_00063","SJAG_02289"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91545,93554,97028,111509,111634,118865],"is_not":false,"summary":null,"term":"GO:0046854"},{"annotations":[92172],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902635"},{"annotations":[104722,90736],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:1902647"},{"annotations":[63369,61837,71814,61685],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0036092"},{"annotations":[117924],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1902648"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of phosphatidylinositol phosphate.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylinositol biosynthetic process","termid":"GO:0006661"}],"gene_count":14,"genes_by_uniquename":{"SJAG_00053":null,"SJAG_00063":null,"SJAG_00114":null,"SJAG_00296":null,"SJAG_01571":null,"SJAG_01863":null,"SJAG_02289":null,"SJAG_02613":null,"SJAG_03131":null,"SJAG_03170":null,"SJAG_04537":null,"SJAG_04545":null,"SJAG_04930":null,"SJAG_05330":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"phosphatidylinositol phosphate biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"secondary_identifiers":["GO:0046837"],"synonyms":[{"name":"PIP biosynthesis","type":"exact"},{"name":"PtdInsP biosynthesis","type":"exact"},{"name":"phosphatidylinositol phosphate biosynthesis","type":"exact"},{"name":"phosphatidylinositol phosphate phosphorylation","type":"narrow"},{"name":"phosphatidylinositol phosphorylation","type":"related"},{"name":"phosphoinositide phosphorylation","type":"narrow"}],"termid":"GO:0046854","terms_by_termid":{"GO:0036092":null,"GO:0046854":null,"GO:1902635":null,"GO:1902647":null,"GO:1902648":null}}


id: MONDO:0015700
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A genetic deficiency of any membrane attack complex (MAC, also known as terminal component complex (TCC)) component of the complement system (C5, C6, C7, C8, C9). Deficiencies of the terminal complement pathway results in a predisposition to infections, such as invasive meningococcal disease or disseminated gonococcal infection.","definition_xrefs":["PMID:20930072"],"direct_ancestors":[{"relation_name":"is_a","term_name":"complement deficiency","termid":"MONDO:0003832"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"immunodeficiency due to a late component of complement deficiency","secondary_identifiers":["icd11.foundation:531050218","MEDGEN:585067","UMLS:C0398765","Orphanet:169150","GARD:17050"],"synonyms":[{"name":"deficiency of complement of terminal pathway","type":"exact"},{"name":"immunodeficiency due to C5 to C9 component complement deficiency","type":"exact"},{"name":"immunodeficiency due to a C5 to C9 component complement deficiency","type":"exact"},{"name":"terminal complement pathway deficiency","type":"exact"}],"termid":"MONDO:0015700","xrefs":{"Monarch":{"xref_id":"0015700"}}}


id: GO:0032615
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of interleukin-12 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine production","termid":"GO:0001816"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"interleukin-12 production","secondary_identifiers":["GO:0042090","GO:0072610"],"synonyms":[{"name":"CLMF production","type":"narrow"},{"name":"IL-12 production","type":"exact"},{"name":"NKSF production","type":"narrow"},{"name":"interleukin-12 biosynthetic process","type":"narrow"},{"name":"interleukin-12 secretion","type":"narrow"}],"termid":"GO:0032615"}


id: PBO:0079567
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin associated and SH3 domain containing B","termid":"PBO:0079567"}


id: GO:0034153
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of toll-like receptor 6 signaling pathway.","definition_xrefs":["GOC:add","PMID:16551253","PMID:17328678"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of toll-like receptor 6 signaling pathway","termid":"GO:0034151"},{"relation_name":"is_a","term_name":"positive regulation of pattern recognition receptor signaling pathway","termid":"GO:0062208"},{"relation_name":"positively_regulates","term_name":"toll-like receptor 6 signaling pathway","termid":"GO:0034150"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of toll-like receptor 6 signaling pathway","synonyms":[{"name":"positive regulation of TLR6 signaling pathway","type":"exact"},{"name":"positive regulation of toll-like receptor 6 signalling pathway","type":"exact"}],"termid":"GO:0034153"}


id: MONDO:1012671
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any lysosomal storage disorder that occurs in pigs due to a mutation in the NAGLU gene created by genetic engineering or gene editing.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mucopolysaccharidosis or mucopolysaccharidosis-like disorder, non-human animal","termid":"MONDO:1012581"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mucopolysaccharidosis IIIB, pig","secondary_identifiers":["OMIA:001342-9823"],"synonyms":[{"name":"Sanfilippo syndrome type B, pig","type":"related"}],"termid":"MONDO:1012671","xrefs":{"Monarch":{"xref_id":"1012671"}}}


id: GO:0048636
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates, maintains or increases the rate of muscle development.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of muscle organ development","termid":"GO:0048634"},{"relation_name":"is_a","term_name":"positive regulation of developmental process","termid":"GO:0051094"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"positively_regulates","term_name":"muscle organ development","termid":"GO:0007517"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of muscle organ development","synonyms":[{"name":"activation of muscle development","type":"narrow"},{"name":"stimulation of muscle development","type":"narrow"},{"name":"up regulation of muscle development","type":"exact"},{"name":"up-regulation of muscle development","type":"exact"},{"name":"upregulation of muscle development","type":"exact"}],"termid":"GO:0048636"}


id: PR:O13774
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A GTP cyclohydrolase 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO00727","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTP cyclohydrolase 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17A5.13","secondary_identifiers":["UniProtKB:O13774"],"synonyms":[{"name":"GTP cyclohydrolase I (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"GTP-CH-I (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-GCH1","type":"exact"}],"termid":"PR:O13774"}


id: GO:0102919
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: FMNH2 + O2 = 5,6-dimethylbenzimidazole + D-erythrose 4-phosphate + dialuric acid.","definition_xrefs":["GOC:pz","EC:1.13.11.79"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"5,6-dimethylbenzimidazole synthase activity","secondary_identifiers":["MetaCyc:RXN-8771","RHEA:27345"],"termid":"GO:0102919"}


id: PBO:0066895
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 195","termid":"PBO:0066895"}


id: MONDO:1011132
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Atrophic rhinitis that occurs in cattle.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"atrophic rhinitis, non-human animal","termid":"MONDO:1010285"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"atrophic rhinitis, cattle","secondary_identifiers":["OMIA:000091-9913"],"termid":"MONDO:1011132","xrefs":{"Monarch":{"xref_id":"1011132"}}}


id: PBO:0113090
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytosolic and mitochondrial glutathione oxidoreductase; converts oxidized glutathione to reduced glutathione; cytosolic Glr1p is the main determinant of the glutathione redox state of the mitochondrial intermembrane space; mitochondrial Glr1p has a role in resistance to hyperoxia; also detected in peroxisomes; protein abundance increases in response to DNA replication stress","termid":"PBO:0113090"}


id: FYPO:0007791
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of RNA measured in a cell when the cell is subject to magnesium starvation is lower than normal. Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah","PMID:33970532"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA absent from cell during vegetative growth","termid":"FYPO:0003161"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"RNA absent from cell during cellular response to magnesium starvation","synonyms":[{"name":"RNA absent from cell during cellular response to magnesium starvation during mitotic cell cycle","type":"related"},{"name":"RNA absent from cell during cellular response to magnesium starvation during vegetative growth","type":"exact"},{"name":"RNA absent from cell during magnesium depletion","type":"exact"},{"name":"RNA absent from cell during magnesium deprivation","type":"exact"},{"name":"RNA absent from cell during magnesium starvation","type":"exact"},{"name":"transcripts absent from cell during cellular response to magnesium starvation","type":"exact"},{"name":"undetectable RNA level during cellular response to magnesium starvation","type":"exact"}],"termid":"FYPO:0007791"}


id: FYPO:0004468
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cell tip is decreased during a cellular response to salt stress.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to cell tip during vegetative growth","termid":"FYPO:0001586"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"decreased protein localization to cell tip during cellular response to salt stress","synonyms":[{"name":"decreased protein localisation to cell tip during cellular response to salt stress","type":"exact"},{"name":"decreased protein localization to cell end during cellular response to salt stress","type":"exact"},{"name":"decreased protein localization to cell tip during cellular response to salt stress during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to cell tip during cellular response to salt stress during vegetative growth","type":"exact"},{"name":"reduced protein localization to cell tip during cellular response to salt stress","type":"exact"}],"termid":"FYPO:0004468"}


id: GO:0005066
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete transmembrane receptor protein tyrosine kinase signaling protein activity (obsolete GO:0005066)","synonyms":[{"name":"transmembrane receptor protein tyrosine kinase signaling protein activity","type":"exact"},{"name":"transmembrane receptor protein tyrosine kinase signalling protein activity","type":"exact"}],"termid":"GO:0005066"}


id: PBO:0078495
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ile (anticodon GAT) 1-2","termid":"PBO:0078495"}


id: PBO:0000806
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine hydrolase-like","termid":"PBO:0000806"}


id: PBO:0063676
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piggyBac transposable element derived 4","termid":"PBO:0063676"}


id: GO:0019157
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: (S)-malate + O2 = H2O2 + oxaloacetate.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete malate oxidase activity (obsolete GO:0019157)","synonyms":[{"name":"(S)-malate:oxygen oxidoreductase activity","type":"exact"},{"name":"FAD-dependent malate oxidase activity","type":"exact"},{"name":"malic dehydrogenase II","type":"related"},{"name":"malic oxidase activity","type":"exact"}],"termid":"GO:0019157"}


id: GO:0004263
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the preferential cleavage of Tyr-Xaa > Trp-Xaa > Phe-Xaa > Leu-Xaa.","definition_xrefs":["ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete chymotrypsin activity (obsolete GO:0004263)","synonyms":[{"name":"alpha-chymar","type":"related"},{"name":"alpha-chymar ophth","type":"related"},{"name":"alpha-chymotrypsin A","type":"related"},{"name":"alpha-chymotrypsin activity","type":"narrow"},{"name":"avazyme","type":"related"},{"name":"chymar","type":"related"},{"name":"chymotest","type":"related"},{"name":"chymotrypsin A activity","type":"narrow"},{"name":"chymotrypsin B activity","type":"narrow"},{"name":"chymotrypsin activity","type":"exact"},{"name":"chymotrypsins A and B","type":"related"},{"name":"enzeon","type":"related"},{"name":"quimar","type":"related"},{"name":"quimotrase activity","type":"related"}],"termid":"GO:0004263"}


id: GO:0060991
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The aggregation, arrangement and bonding together of a set of macromolecules to form a macromolecular complex that contains a tube of lipid surrounded by a protein coat involved in cytokinesis.","definition_xrefs":["GOC:ascb_2009","GOC:tb","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete lipid tube assembly involved in cytokinesis (obsolete GO:0060991)","synonyms":[{"name":"lipid tube assembly involved in cytokinesis","type":"exact"},{"name":"lipid tubulation involved in cytokinesis","type":"exact"}],"termid":"GO:0060991"}


id: MONDO:0013417
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare genetic disorder with an autosomal recessive pattern of inheritance. It is caused by the ineffective or decreased biosynthesis of the third complement component, C3. C3 deficiency may also be acquired acutely post-infection or chronically from co-morbid autoimmune disorders. If C3 is adequately synthesized, its rapid depletion may result in a functional deficiency. Clinical signs of the inherited deficiency present within the first decade of life and are consistent with the signs of recurrent systemic infection or immune complex disease. Deficiency of serum C3 and its major cleavage product, C3b, will decrease the effective humoral immune response to encapsulated bacteria. Deficiency of C3 also impairs clearance of circulating immune complexes and therefore predisposes to rheumatic and renal disease.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"classic complement early component deficiency","termid":"MONDO:0000015"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"complement component 3 deficiency","secondary_identifiers":["MEDGEN:462421","OMIM:613779","Orphanet:280133","MESH:C565169","GARD:16489","NANDO:2200782","UMLS:C3151071","DOID:8354","NCIT:C9468"],"synonyms":[{"name":"C3 classic complement early component deficiency","type":"exact"},{"name":"C3 deficiency","type":"exact"},{"name":"C3 deficiency, autosomal recessive","type":"related"},{"name":"C3d","type":"related"},{"name":"classic complement early component deficiency caused by mutation in C3","type":"exact"},{"name":"complement component 3 deficiency, autosomal recessive","type":"related"}],"termid":"MONDO:0013417","xrefs":{"Monarch":{"xref_id":"0013417"}}}


id: GO:0048533
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized floral cell acquires the specialized features of a sporocyte. Sporocytes are the haploid spores of angiosperms. Once formed, they undergo meiotic divisions to form microspores and megaspores.","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation","termid":"GO:0030154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sporocyte differentiation","synonyms":[{"name":"sporocyte development","type":"narrow"},{"name":"sporocyte morphogenesis","type":"related"}],"termid":"GO:0048533"}


id: PBO:0071623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L36a pseudogene 41","termid":"PBO:0071623"}


id: PBO:0045851
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 alpha 1 pseudogene 41","termid":"PBO:0045851"}


id: MOD:01927
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-tyrosine residue to O4'-glycosyltyrosine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-glycosylated residue","termid":"MOD:00396"},{"relation_name":"is_a","term_name":"modified L-tyrosine residue","termid":"MOD:00919"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"O-glycosyl-L-tyrosine","synonyms":[{"name":"OGlycoTyr","type":"exact"}],"termid":"MOD:01927"}


id: PBO:0046465
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endoplasmic reticulum aminopeptidase 1","termid":"PBO:0046465"}


id: GO:0042926
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the directed movement of 3-hydroxyphenylpropionic acid from one side of a membrane to the other.","definition_xrefs":["GOC:jl","PMID:9098055"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid transmembrane transporter activity","termid":"GO:0008028"},{"relation_name":"is_a","term_name":"xenobiotic transmembrane transporter activity","termid":"GO:0042910"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"3-hydroxyphenylpropionic acid transmembrane transporter activity","synonyms":[{"name":"3-(3-hydroxyphenyl)propionic acid transporter activity","type":"exact"},{"name":"3-hydroxyphenylpropionic acid transporter activity","type":"related"},{"name":"m-hydroxyphenylpropionic acid transporter activity","type":"exact"}],"termid":"GO:0042926"}


id: GO:0048615
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the anterior midgut (ectodermal) are generated and organized, during the embryonic phase.","definition_xrefs":["GOC:jid","GOC:rc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"morphogenesis of embryonic epithelium","termid":"GO:0016331"},{"relation_name":"part_of","term_name":"anterior midgut (ectodermal) morphogenesis","termid":"GO:0007441"},{"relation_name":"part_of","term_name":"embryonic ectodermal digestive tract morphogenesis","termid":"GO:0048613"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"embryonic anterior midgut (ectodermal) morphogenesis","termid":"GO:0048615"}


id: GO:0018596
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: dimethylsilanediol + O2 + 2 H+ + 2 e- = H2O + hydroxymethylmethylsilanediol.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete dimethylsilanediol hydroxylase activity (obsolete GO:0018596)","synonyms":[{"name":"DMSD hydroxylase activity","type":"exact"}],"termid":"GO:0018596"}


id: MONDO:0005285
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete kidney stone (obsolete MONDO:0005285)","termid":"MONDO:0005285","xrefs":{"Monarch":{"xref_id":"0005285"}}}


id: FYPO:0008411
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in a mating cell in which the phosphorylation of one or more specific proteins, or of specific protein sites, occurs to a lower extent than normal.","definition_xrefs":["PomBase:pc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein phosphorylation","termid":"FYPO:0002677"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0002494","FYPO:0002274","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"decreased protein phosphorylation during mating","termid":"FYPO:0008411"}


id: PBO:0061328
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear pore complex interacting protein family member B6","termid":"PBO:0061328"}


id: GO:0010299
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that reduces or removes the toxicity of cobalt ion (Co2+). These include transport of cobalt away from sensitive areas and to compartments or complexes whose purpose is sequestration of cobalt ion.","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detoxification of inorganic compound","termid":"GO:0061687"},{"relation_name":"part_of","term_name":"response to cobalt ion","termid":"GO:0032025"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098754"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0098754","GO:0008150"],"is_obsolete":false,"name":"detoxification of cobalt ion","termid":"GO:0010299"}


id: GO:0032018
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-methylbutan-1-ol + NADP+ = 2-methylbutanal + NADPH + H+.","definition_xrefs":["PMID:12210903"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alcohol dehydrogenase (NADP+) activity","termid":"GO:0008106"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"2-methylbutanal reductase (NADPH) activity","synonyms":[{"name":"2-methylbutanal reductase (NADP) activity","type":"exact"},{"name":"2-methylbutanol:NADP oxidoreductase activity","type":"exact"},{"name":"2-methylbutyraldehyde reductase (NADP) activity","type":"exact"}],"termid":"GO:0032018"}


id: GO:0019383
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of (+)-camphor, a bicyclic monoterpene ketone.","definition_xrefs":["MetaCyc:P601-PWY"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoterpenoid catabolic process","termid":"GO:0016100"},{"relation_name":"is_a","term_name":"(+)-camphor metabolic process","termid":"GO:0018882"},{"relation_name":"is_a","term_name":"ketone catabolic process","termid":"GO:0042182"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"(+)-camphor catabolic process","secondary_identifiers":["UM-BBD_pathwayID:cam"],"synonyms":[{"name":"(+)-camphor breakdown","type":"exact"},{"name":"(+)-camphor catabolism","type":"exact"},{"name":"(+)-camphor degradation","type":"exact"}],"termid":"GO:0019383"}


id: PBO:0087903
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcription factor; subunit of the heme-activated, glucose-repressed Hap2p/3p/4p/5p CCAAT-binding complex, a transcriptional activator and global regulator of respiratory gene expression; provides the principal activation function of the complex; involved in diauxic shift","termid":"PBO:0087903"}


id: PBO:0000395
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.7.1.7","termid":"PBO:0000395"}


id: PBO:0084337
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Kinetochore checkpoint WD40 repeat protein; localizes to kinetochores during prophase and metaphase, delays anaphase in the presence of unattached kinetochores; forms complexes with Mad1p-Bub1p and with Cdc20p, binds Mad2p and Mad3p; functions at kinetochore to activate APC/C-Cdc20p for normal mitotic progression","termid":"PBO:0084337"}


id: PBO:0078381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"triggering receptor expressed on myeloid cells like 5, pseudogene","termid":"PBO:0078381"}


id: GO:0018504
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: cis-1,2-dihydrobenzene-1,2-diol + NAD+ = catechol + NADH + H+.","definition_xrefs":["EC:1.3.1.19"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","termid":"GO:0016628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"cis-1,2-dihydrobenzene-1,2-diol dehydrogenase activity","secondary_identifiers":["MetaCyc:1.3.1.19-RXN","UM-BBD_enzymeID:r0080","RHEA:15457"],"synonyms":[{"name":"cis-1,2-dihydrobenzene-1,2-diol:NAD+ oxidoreductase activity","type":"related"},{"name":"cis-1,2-dihydrocyclohexa-3,5-diene (nicotinamide adenine dinucleotide) oxidoreductase activity","type":"related"},{"name":"cis-benzene glycol dehydrogenase activity","type":"related"}],"termid":"GO:0018504"}


id: GO:0046719
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any virus-mediated process that modulates the levels of viral proteins in a cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of viral process","termid":"GO:0050792"},{"relation_name":"is_a","term_name":"regulation of biological quality","termid":"GO:0065008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation by virus of viral protein levels in host cell","synonyms":[{"name":"regulation of viral protein levels","type":"exact"}],"termid":"GO:0046719"}


id: PBO:0081504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF407 antisense RNA 1","termid":"PBO:0081504"}


id: PBO:0081191
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Zic family member 4","termid":"PBO:0081191"}


id: PBO:0066407
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RELB proto-oncogene, NF-kB subunit","termid":"PBO:0066407"}


id: FYPO:0006609
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which a protein that is normally localized intermittently to the Cdr2 medial cortical node complex is associated with the complex for periods of shorter duration than normal.","definition_xrefs":["PMID:29514920","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal intermittent protein localization to Cdr2 medial cortical node complex","termid":"FYPO:0006607"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"decreased protein dwell time during intermittent localization to Cdr2 medial cortical node complex","synonyms":[{"name":"decreased duration of bursts of intermittent protein localization to Cdr2 medial cortical node complex","type":"related"},{"name":"decreased duration of protein localization bursts to Cdr2 medial cortical node complex","type":"related"},{"name":"decreased duration of protein visits to Cdr2 medial cortical node complex","type":"related"},{"name":"decreased protein dwell time during intermittent localization to Cdr2 medial cortical node complex during mitotic cell cycle","type":"related"},{"name":"decreased protein dwell time during intermittent localization to Cdr2 medial cortical node complex during vegetative growth","type":"exact"},{"name":"decreased protein dwell time during transient localization to Cdr2 medial cortical node complex","type":"exact"},{"name":"reduced protein dwell time during intermittent localization to Cdr2 medial cortical node complex","type":"exact"}],"termid":"FYPO:0006609"}


id: SO:0000678
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A 3' splice site that does not have the sequence \\\"AG\\\".","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"three_prime_cis_splice_site","termid":"SO:0000164"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non_canonical_three_prime_splice_site","synonyms":[{"name":"non canonical 3' splice site","type":"related"},{"name":"non canonical three prime splice site","type":"exact"},{"name":"non-canonical three prime splice site","type":"exact"}],"termid":"SO:0000678"}


id: PBO:0065026
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peroxiredoxin 4","termid":"PBO:0065026"}


id: GO:1902217
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any apoptotic process in an erythrocyte.","definition_xrefs":["GOC:mtg_apoptosis","PMID:14569084","GOC:TermGenie","GOC:rl","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myeloid cell apoptotic process","termid":"GO:0033028"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"erythrocyte apoptotic process","synonyms":[{"name":"RBC apoptosis","type":"narrow"},{"name":"RBC apoptotic process","type":"exact"},{"name":"erythrocyte apoptosis","type":"narrow"},{"name":"red blood cell apoptosis","type":"narrow"},{"name":"red blood cell apoptotic process","type":"exact"}],"termid":"GO:1902217"}


id: GO:0018377
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The covalent attachment of a myristoyl group to a protein.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein lipidation","termid":"GO:0006497"},{"relation_name":"is_a","term_name":"protein acylation","termid":"GO:0043543"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0042158"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0042158"],"is_obsolete":false,"name":"protein myristoylation","secondary_identifiers":["GO:0018319"],"synonyms":[{"name":"protein amino acid myristoylation","type":"exact"}],"termid":"GO:0018377"}


id: GO:1901258
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of macrophage colony-stimulating factor production.","definition_xrefs":["GOC:BHF","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine production","termid":"GO:0001819"},{"relation_name":"is_a","term_name":"regulation of macrophage colony-stimulating factor production","termid":"GO:1901256"},{"relation_name":"positively_regulates","term_name":"macrophage colony-stimulating factor production","termid":"GO:0036301"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"positively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of macrophage colony-stimulating factor production","synonyms":[{"name":"activation of M-CSF production","type":"exact"},{"name":"activation of macrophage colony-stimulating factor production","type":"narrow"},{"name":"positive regulation of M-CSF production","type":"exact"},{"name":"up regulation of M-CSF production","type":"exact"},{"name":"up regulation of macrophage colony-stimulating factor production","type":"exact"},{"name":"up-regulation of M-CSF production","type":"exact"},{"name":"up-regulation of macrophage colony-stimulating factor production","type":"exact"},{"name":"upregulation of M-CSF production","type":"exact"},{"name":"upregulation of macrophage colony-stimulating factor production","type":"exact"}],"termid":"GO:1901258"}


id: GO:0000761
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"During conjugation without cellular fusion, the process that results in pairing complementary mating types. Localized morphological, cytological, and cytoskeletal changes connect the mating types without cytoplasmic mixing.","definition_xrefs":["GOC:elh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adhesion between unicellular organisms","termid":"GO:0098610"},{"relation_name":"part_of","term_name":"conjugation with mutual genetic exchange","termid":"GO:0000748"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"conjugant formation","termid":"GO:0000761"}


id: PBO:0090396
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ESCRT-III adaptor Alx1","termid":"PBO:0090396"}


id: GO:0075040
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process modulates the frequency, rate or extent of turgor formation in the symbiont appressorium.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of establishment of turgor in appressorium (obsolete GO:0075040)","synonyms":[{"name":"regulation of turgor formation in appressorium","type":"related"}],"termid":"GO:0075040"}


id: PBO:0055424
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2854","termid":"PBO:0055424"}


id: PBO:0057128
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 211","termid":"PBO:0057128"}


id: PATO:0001017
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001017 relative occurence value (obsolete PATO:0001017)","termid":"PATO:0001017"}


id: PATO:0001120
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001120 relative momentum value (obsolete PATO:0001120)","termid":"PATO:0001120"}


id: PBO:0083758
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Essential Fe-S protein; required for ribosome biogenesis, translation initiation/termination; facilitates binding of multifactor complex (MFC) of initiation factors to small ribosomal subunit; Dom34-Hbs1 complex and Rli1p work in dissociating inactive ribosomes, thereby facilitating translation restart; forms complex with Lto1p and Yae1p; dependency on ROS-labile FeS clusters, activity in nuclear ribosomal-subunit export impaired by mild oxidative stress","termid":"PBO:0083758"}


id: PBO:0058348
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4721","termid":"PBO:0058348"}


id: PBO:0033824
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial TOM complex assembly protein Tom13 (predicted)","termid":"PBO:0033824"}


id: SO:0001362
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"5_methoxycarbonylmethyl_2_thiouridine is a modified uridine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_uridine","termid":"SO:0001277"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"five_methoxycarbonylmethyl_two_thiouridine","secondary_identifiers":["RNAMOD:070"],"synonyms":[{"name":"5-methoxycarbonylmethyl-2-thiouridine","type":"exact"},{"name":"five methoxycarbonylmethyl two thiouridine","type":"exact"},{"name":"mcm5s2U","type":"exact"}],"termid":"SO:0001362"}


id: PBO:0028245
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_duration_of_mitotic_DNA_damage_checkpoint_during_cellular_response_to_UV","termid":"PBO:0028245"}


id: MONDO:0043458
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Harmful effects of non-experimental exposure to ionizing or non-ionizing radiation in VERTEBRATES.","definition_xrefs":["MESH:D011832"],"direct_ancestors":[{"relation_name":"is_a","term_name":"injury","termid":"MONDO:0021178"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"radiation injury","synonyms":[{"name":"Injuries, radiation","type":"related"},{"name":"Sicknesses, radiation","type":"related"},{"name":"injury, radiation","type":"related"},{"name":"radiation Sicknesses","type":"related"},{"name":"radiation injury","type":"exact"},{"name":"radiation sickness","type":"related"},{"name":"radiation syndrome","type":"related"},{"name":"radiation syndromes","type":"related"},{"name":"sickness, radiation","type":"related"},{"name":"syndrome, radiation","type":"related"},{"name":"syndromes, radiation","type":"related"}],"termid":"MONDO:0043458","xrefs":{"Monarch":{"xref_id":"0043458"}}}


id: GO:1904714
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of chaperone-mediated autophagy.","definition_xrefs":["GOC:pad","GOC:PARL","GO_REF:0000058","GOC:TermGenie","PMID:20176123"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of autophagy","termid":"GO:0010506"},{"relation_name":"is_a","term_name":"regulation of protein catabolic process","termid":"GO:0042176"},{"relation_name":"regulates","term_name":"chaperone-mediated autophagy","termid":"GO:0061684"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0030163"},{"rel_name":"regulates","termid":"GO:0006914"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006914","GO:0030163"],"is_obsolete":false,"name":"regulation of chaperone-mediated autophagy","synonyms":[{"name":"regulation of CMA","type":"related"}],"termid":"GO:1904714"}


id: FYPO:0006706
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which a calcium-transporting ATPase activity is absent.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished transporter activity","termid":"FYPO:0002117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002114"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0002114","FYPO:0000138","FYPO:0000652","FYPO:0000707","FYPO:0001985"],"is_obsolete":false,"name":"abolished calcium-transporting ATPase activity","synonyms":[{"name":"calcium-transporting ATPase activity abolished","type":"exact"}],"termid":"FYPO:0006706"}


id: PBO:0080410
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VPS37D subunit of ESCRT-I","termid":"PBO:0080410"}


id: PBO:0061099
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuroligin 3","termid":"PBO:0061099"}


id: GO:0019598
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of (R)-mandelate into other compounds, including catechol.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catechol-containing compound biosynthetic process","termid":"GO:0009713"},{"relation_name":"is_a","term_name":"mandelate catabolic process","termid":"GO:0019596"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"(R)-mandelate catabolic process to catechol","synonyms":[{"name":"(R)-mandelate breakdown to catechol","type":"exact"},{"name":"(R)-mandelate degradation to catechol","type":"exact"}],"termid":"GO:0019598"}


id: GO:0140158
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A family of collagens containing multiple von Willebrand factor A (vWA) domains.","definition_xrefs":["PMID:21421911"],"direct_ancestors":[{"relation_name":"is_a","term_name":"collagen trimer","termid":"GO:0005581"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"von-Willerbrand-factor-A-domain-rich collagen trimer","termid":"GO:0140158"}


id: MONDO:0013968
data:
  {"annotated_genes":["SJAG_01209"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87524],"is_not":false,"summary":null,"term":"MONDO:0013968"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital disorder of glycosylation type I","termid":"MONDO:0005500"},{"relation_name":"is_a","term_name":"familial dilated cardiomyopathy","termid":"MONDO:0016333"},{"relation_name":"is_a","term_name":"disorder of protein N-glycosylation","termid":"MONDO:0017740"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01209":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005267"},{"rel_name":"is_a","termid":"MONDO:0024322"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0005267","MONDO:0024322"],"is_obsolete":false,"name":"PGM1-congenital disorder of glycosylation","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:614921","Orphanet:319646","NANDO:1200836","DOID:0080570","MEDGEN:414536","MESH:C567859","UMLS:C2752015","GARD:4329"],"synonyms":[{"name":"CDG it","type":"related"},{"name":"CDG syndrome type It","type":"exact"},{"name":"CDG-It","type":"exact"},{"name":"CDG1T","type":"exact"},{"name":"GSD 14","type":"related"},{"name":"GSD type 14","type":"related"},{"name":"GSDXIV","type":"related"},{"name":"PGM1-CDG","type":"exact"},{"name":"PGM1-congenital disorder of glycosylation","type":"exact"},{"name":"Pgm1 deficiency","type":"related"},{"name":"congenital disorder of glycosylation type 1t","type":"exact"},{"name":"congenital disorder of glycosylation type It","type":"exact"},{"name":"congenital disorder of glycosylation, type It","type":"related"},{"name":"glycogen storage disease 14","type":"related"},{"name":"glycogen storage disease due to phosphoglucomutase deficiency","type":"related"},{"name":"phosphoglucomutase 1 deficiency","type":"related"},{"name":"phosphoglucomutase deficiency type 1","type":"related"},{"name":"phosphoglucomutase-1 deficiency","type":"exact"},{"name":"type 14 glycogenosis","type":"related"}],"termid":"MONDO:0013968","terms_by_termid":{"MONDO:0013968":null},"xrefs":{"Monarch":{"xref_id":"0013968"}}}


id: PBO:0076637
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TATA-box binding protein","termid":"PBO:0076637"}


id: MONDO:1010829
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Tibial hemimelia that occurs in cattle.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tibial hemimelia, non-human animal","termid":"MONDO:1010161"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tibial hemimelia, cattle","secondary_identifiers":["OMIA:001009-9913"],"termid":"MONDO:1010829","xrefs":{"Monarch":{"xref_id":"1010829"}}}


id: PATO:0000631
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A positional quality inhering in a bearer by virtue of the bearer's being stretched out and lying at full length along the ground.","definition_xrefs":["thefreedictionary.com:thefreedictionary.com"],"direct_ancestors":[{"relation_name":"is_a","term_name":"position","termid":"PATO:0000140"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostrate","termid":"PATO:0000631"}


id: PBO:0071033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 35","termid":"PBO:0071033"}


id: PBO:0083907
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Flavin-linked sulfhydryl oxidase of the mitochondrial IMS; N-terminus is an intrinsically disordered domain that in the cytosol helps target Erv1p to mitochondria, and in the intermembrane space oxidizes Mia40p as part of a disulfide relay system that promotes intermembrane space retention of imported proteins; functional ortholog of human GFER (ALR); human GFER carrying N-terminal 21 amino acids of Erv1p functionally complements the lethality of the erv1 null mutation","termid":"PBO:0083907"}


id: FYPO:0005486
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which occurrence of iron-sulfur cluster binding by a gene product (usually a protein) in a mutant is increased. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal iron-sulfur cluster binding","termid":"FYPO:0001709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0001985","FYPO:0000707"],"is_obsolete":false,"name":"increased iron-sulfur cluster binding","synonyms":[{"name":"increased iron-sulphur cluster binding","type":"exact"}],"termid":"FYPO:0005486"}


id: MONDO:0033006
data:
  {"annotated_genes":["SJAG_02863"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86253],"is_not":false,"summary":null,"term":"MONDO:0033006"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Galloway-Mowat syndrome","termid":"MONDO:0009627"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02863":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025"],"is_obsolete":false,"name":"Galloway-Mowat syndrome 2, X-linked","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0080244","GARD:15281","OMIM:301006","UMLS:C4538784","MEDGEN:1625619"],"synonyms":[{"name":"GAMOS2","type":"related"},{"name":"Galloway-Mowat syndrome 2","type":"related"},{"name":"Galloway-Mowat syndrome 2, X-linked","type":"exact"},{"name":"Galloway-Mowat syndrome 2, X-linked, X-linked recessive","type":"exact"}],"termid":"MONDO:0033006","terms_by_termid":{"MONDO:0033006":null},"xrefs":{"Monarch":{"xref_id":"0033006"}}}


id: MONDO:0019867
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Mosaic trisomy 8 is a chromosomal disorder defined by the presence of three copies of chromosome 8 in some cells of the organism. It is characterized by facial dysmorphism, mild intellectual deficit and joint, urinary, cardiac and skeletal anomalies.","definition_xrefs":["Orphanet:96061"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome 8, trisomy","termid":"MONDO:0043452"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mosaic trisomy 8","secondary_identifiers":["MEDGEN:797340","GARD:5359","MESH:C537940","SCTID:717335009","UMLS:C1096527","MedDRA:10053916"],"synonyms":[{"name":"Mosaic trisomy chromosome 8","type":"related"},{"name":"Mosaic trisomy type 8","type":"exact"},{"name":"Warkany syndrome","type":"exact"},{"name":"trisomy 8 mosaicism","type":"related"}],"termid":"MONDO:0019867","xrefs":{"Monarch":{"xref_id":"0019867"}}}


id: PATO:0002417
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"Extending through or affecting the entire thickness of the wall of an organ or cavity or boundary.","definition_xrefs":["PATOC:MPATH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"position","termid":"PATO:0000140"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmural","termid":"PATO:0002417"}


id: PBO:0066980
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 283","termid":"PBO:0066980"}


id: GO:0010947
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of meiotic joint molecule formation. Meiotic joint molecule formation is the conversion of the paired broken DNA and homologous duplex DNA into a four-stranded branched intermediate, known as a joint molecule, formed during meiotic recombination.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of meiotic joint molecule formation","termid":"GO:0010946"},{"relation_name":"is_a","term_name":"negative regulation of cell cycle process","termid":"GO:0010948"},{"relation_name":"is_a","term_name":"negative regulation of reproductive process","termid":"GO:2000242"},{"relation_name":"negatively_regulates","term_name":"meiotic joint molecule formation","termid":"GO:0000709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"negative regulation of meiotic joint molecule formation","termid":"GO:0010947"}


id: FYPO:0002438
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells form actin cables that are shorter than normal and abnormally oriented within the cell.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"short actin cables","termid":"FYPO:0002434"},{"relation_name":"has_part","term_name":"misoriented actin cables","termid":"FYPO:0002436"},{"relation_name":"is_a","term_name":"short actin cables","termid":"FYPO:0002434"},{"relation_name":"is_a","term_name":"misoriented actin cables","termid":"FYPO:0002436"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0004803","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"short, misoriented actin cables","synonyms":[{"name":"short, abnormally oriented actin cables","type":"exact"},{"name":"short, misoriented actin cables during mitotic cell cycle","type":"related"},{"name":"short, misoriented actin cables during vegetative growth","type":"exact"},{"name":"short, misoriented formin-nucleated actin cables","type":"exact"}],"termid":"FYPO:0002438"}


id: GO:0032691
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-1 beta production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of interleukin-1 beta production","termid":"GO:0032651"},{"relation_name":"is_a","term_name":"negative regulation of interleukin-1 production","termid":"GO:0032692"},{"relation_name":"negatively_regulates","term_name":"interleukin-1 beta production","termid":"GO:0032611"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of interleukin-1 beta production","secondary_identifiers":["GO:0050713","GO:0050724"],"synonyms":[{"name":"down regulation of interleukin-1 beta production","type":"exact"},{"name":"down-regulation of interleukin-1 beta production","type":"exact"},{"name":"downregulation of interleukin-1 beta production","type":"exact"},{"name":"inhibition of interleukin-1 beta production","type":"narrow"},{"name":"negative regulation of IL-1 beta production","type":"exact"},{"name":"negative regulation of interleukin-1 beta biosynthetic process","type":"narrow"},{"name":"negative regulation of interleukin-1 beta secretion","type":"narrow"}],"termid":"GO:0032691"}


id: PBO:0014241
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial calcium uniporter regulator (predicted)","termid":"PBO:0014241"}


id: MONDO:1030001
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epilepsy, juvenile absence, susceptibility to","secondary_identifiers":["OMIMPS:607631"],"termid":"MONDO:1030001","xrefs":{"Monarch":{"xref_id":"1030001"}}}


id: MONDO:0030866
data:
  {"annotated_genes":["SJAG_03914","SJAG_01766"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86035,86036],"is_not":false,"summary":null,"term":"MONDO:0030866"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01766":null,"SJAG_03914":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with cardiomyopathy, spasticity, and brain abnormalities","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0070543","OMIM:619121","UMLS:C5436848","MEDGEN:1750805"],"synonyms":[{"name":"NEDCASB","type":"exact"}],"termid":"MONDO:0030866","terms_by_termid":{"MONDO:0030866":null},"xrefs":{"Monarch":{"xref_id":"0030866"}}}


id: GO:1902689
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of NAD metabolic process.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:19846558","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of purine nucleotide metabolic process","termid":"GO:1900543"},{"relation_name":"is_a","term_name":"regulation of NAD metabolic process","termid":"GO:1902688"},{"relation_name":"negatively_regulates","term_name":"NAD+ metabolic process","termid":"GO:0019674"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0055086"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"negative regulation of NAD metabolic process","synonyms":[{"name":"inhibition of NAD metabolism","type":"narrow"},{"name":"inhibition of NAD phosphorylation and dephosphorylation","type":"narrow"},{"name":"inhibition of nicotinamide adenine dinucleotide metabolic process","type":"narrow"},{"name":"inhibition of nicotinamide adenine dinucleotide metabolism","type":"narrow"},{"name":"inhibition of oxidized NAD metabolic process","type":"narrow"},{"name":"down regulation of NAD (oxidized) metabolic process","type":"exact"},{"name":"down regulation of NAD (oxidized) metabolism","type":"exact"},{"name":"down regulation of NAD metabolic process","type":"exact"},{"name":"down regulation of NAD metabolism","type":"exact"},{"name":"down regulation of NAD phosphorylation and dephosphorylation","type":"narrow"},{"name":"down regulation of nicotinamide adenine dinucleotide metabolic process","type":"exact"},{"name":"down regulation of nicotinamide adenine dinucleotide metabolism","type":"exact"},{"name":"down regulation of oxidized NAD metabolic process","type":"exact"},{"name":"down regulation of oxidized NAD metabolism","type":"exact"},{"name":"down regulation of oxidized nicotinamide adenine dinucleotide metabolic process","type":"exact"},{"name":"down regulation of oxidized nicotinamide adenine dinucleotide metabolism","type":"exact"},{"name":"down-regulation of NAD (oxidized) metabolic process","type":"exact"},{"name":"down-regulation of NAD (oxidized) metabolism","type":"exact"},{"name":"down-regulation of NAD metabolic process","type":"exact"},{"name":"down-regulation of NAD metabolism","type":"exact"},{"name":"down-regulation of NAD phosphorylation and dephosphorylation","type":"narrow"},{"name":"down-regulation of nicotinamide adenine dinucleotide metabolic process","type":"exact"},{"name":"down-regulation of nicotinamide adenine dinucleotide metabolism","type":"exact"},{"name":"down-regulation of oxidized NAD metabolic process","type":"exact"},{"name":"down-regulation of oxidized NAD metabolism","type":"exact"},{"name":"down-regulation of oxidized nicotinamide adenine dinucleotide metabolic process","type":"exact"},{"name":"down-regulation of oxidized nicotinamide adenine dinucleotide metabolism","type":"exact"},{"name":"downregulation of NAD (oxidized) metabolic process","type":"exact"},{"name":"downregulation of NAD (oxidized) metabolism","type":"exact"},{"name":"downregulation of NAD metabolic process","type":"exact"},{"name":"downregulation of NAD metabolism","type":"exact"},{"name":"downregulation of NAD phosphorylation and dephosphorylation","type":"narrow"},{"name":"downregulation of nicotinamide adenine dinucleotide metabolic process","type":"exact"},{"name":"downregulation of nicotinamide adenine dinucleotide metabolism","type":"exact"},{"name":"downregulation of oxidized NAD metabolic process","type":"exact"},{"name":"downregulation of oxidized NAD metabolism","type":"exact"},{"name":"downregulation of oxidized nicotinamide adenine dinucleotide metabolic process","type":"exact"},{"name":"downregulation of oxidized nicotinamide adenine dinucleotide metabolism","type":"exact"},{"name":"inhibition of NAD (oxidized) metabolic process","type":"narrow"},{"name":"inhibition of NAD (oxidized) metabolism","type":"narrow"},{"name":"inhibition of NAD metabolic process","type":"narrow"},{"name":"inhibition of oxidized NAD metabolism","type":"narrow"},{"name":"inhibition of oxidized nicotinamide adenine dinucleotide metabolic process","type":"narrow"},{"name":"inhibition of oxidized nicotinamide adenine dinucleotide metabolism","type":"narrow"},{"name":"negative regulation of NAD (oxidized) metabolic process","type":"exact"},{"name":"negative regulation of NAD (oxidized) metabolism","type":"exact"},{"name":"negative regulation of NAD metabolism","type":"exact"},{"name":"negative regulation of NAD phosphorylation and dephosphorylation","type":"narrow"},{"name":"negative regulation of nicotinamide adenine dinucleotide metabolic process","type":"exact"},{"name":"negative regulation of nicotinamide adenine dinucleotide metabolism","type":"exact"},{"name":"negative regulation of oxidized NAD metabolic process","type":"exact"},{"name":"negative regulation of oxidized NAD metabolism","type":"exact"},{"name":"negative regulation of oxidized nicotinamide adenine dinucleotide metabolic process","type":"exact"},{"name":"negative regulation of oxidized nicotinamide adenine dinucleotide metabolism","type":"exact"}],"termid":"GO:1902689"}


id: PR:Q10104
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A serine hydroxymethyltransferase, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO00915"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine hydroxymethyltransferase, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC18G6.04c","secondary_identifiers":["UniProtKB:Q10104"],"synonyms":[{"name":"SHMT (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-SHMT2","type":"exact"},{"name":"glycine hydroxymethyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"serine methylase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q10104"}


id: PBO:0045405
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DPPA3 pseudogene 7","termid":"PBO:0045405"}


id: MONDO:1012144
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"bird disease","termid":"MONDO:0024905"},{"relation_name":"is_a","term_name":"malignant hyperthermia, non-human animal","termid":"MONDO:1011713"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"malignant hyperthermia, turkey","secondary_identifiers":["OMIA:000621-9103"],"termid":"MONDO:1012144","xrefs":{"Monarch":{"xref_id":"1012144"}}}


id: PBO:0053716
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 926","termid":"PBO:0053716"}


id: PBO:0058303
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4677","termid":"PBO:0058303"}


id: MONDO:0003248
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A pineal parenchymal cell neoplasm (pineocytoma or pineoblastoma) occurring in adults.","definition_xrefs":["NCIT:C8273"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"pineal gland cancer","termid":"MONDO:0003249"},{"relation_name":"is_a","term_name":"pineal parenchymal cell neoplasm","termid":"MONDO:0024890"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adult pineal parenchymal tumor","secondary_identifiers":["UMLS:C0280794","MEDGEN:83710","DOID:5031"],"synonyms":[{"name":"adult pineal gland neoplasm","type":"exact"},{"name":"adult pineal gland tumor","type":"exact"},{"name":"adult pineal gland tumour","type":"exact"},{"name":"adult pineal parenchymal cell neoplasm","type":"exact"},{"name":"adult pineal parenchymal cell tumor","type":"exact"},{"name":"adult pineal parenchymal cell tumour","type":"exact"},{"name":"adult pineal parenchymal neoplasm","type":"exact"},{"name":"adult pineal parenchymal tumor","type":"exact"},{"name":"parenchymal neoplasm of adult pineal gland","type":"exact"},{"name":"parenchymal neoplasm of the adult pineal gland","type":"exact"},{"name":"parenchymal tumor of adult pineal gland","type":"exact"},{"name":"parenchymal tumor of the adult pineal gland","type":"exact"},{"name":"parenchymal tumour of adult pineal gland","type":"exact"},{"name":"parenchymal tumour of the adult pineal gland","type":"exact"},{"name":"pineal parenchymal cell neoplasm of adults","type":"exact"},{"name":"pineal parenchymal cell tumor","type":"broad"},{"name":"pineal parenchymal cell tumour","type":"broad"}],"termid":"MONDO:0003248","xrefs":{"Monarch":{"xref_id":"0003248"}}}


id: PR:Q9UR17
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- nrf1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UR17"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar transporter chaperone 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC21B10.04c","synonyms":[{"name":"Spom972h-nrf1","type":"exact"},{"name":"negative regulator of cdc42 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UR17"}


id: PBO:0015672
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"not functionally complemented by S. cerevisiae TIF34","termid":"PBO:0015672"}


id: PBO:0049843
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HEATR5A divergent transcript","termid":"PBO:0049843"}


id: PBO:0068072
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 377","termid":"PBO:0068072"}


id: PBO:0002174
data:
  {"annotation_feature_type":"gene","cv_name":"sequence_feature","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein KEN box","termid":"PBO:0002174"}


id: MONDO:1011819
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"cancer or benign tumor, non-human animal","termid":"MONDO:1011305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chronic myelogenous leukemia, non-human animal","secondary_identifiers":["OMIA:001513"],"termid":"MONDO:1011819","xrefs":{"Monarch":{"xref_id":"1011819"}}}


id: MONDO:1012347
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"facial eczema, non-human animal","termid":"MONDO:1011746"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"facial eczema, sheep","secondary_identifiers":["OMIA:001276-9940"],"termid":"MONDO:1012347","xrefs":{"Monarch":{"xref_id":"1012347"}}}


id: PBO:0044692
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DDRGK domain containing 1","termid":"PBO:0044692"}


id: PBO:0003428
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone demethylase SWIRM1","termid":"PBO:0003428"}


id: PBO:0085641
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in late endosome to vacuole transport; cytoplasmic and vacuolar membrane protein; required for normal filament maturation during pseudohyphal growth; may function in targeting cargo proteins for degradation; interacts with Vta1p","termid":"PBO:0085641"}


id: PBO:0074166
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 35 member G3","termid":"PBO:0074166"}


id: GO:0046485
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving ether lipids, lipids that contain (normally) one lipid alcohol in ether linkage to one of the carbon atoms (normally C-1) of glycerol.","definition_xrefs":["ISBN:0198506732","PMID:15337120"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipid metabolic process","termid":"GO:0006629"},{"relation_name":"is_a","term_name":"glycerol ether metabolic process","termid":"GO:0006662"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"ether lipid metabolic process","secondary_identifiers":["Wikipedia:Ether_lipid"],"synonyms":[{"name":"ether lipid metabolism","type":"exact"},{"name":"plasmalogen metabolic process","type":"narrow"}],"termid":"GO:0046485"}


id: PBO:0081234
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger MYND-type containing 19","termid":"PBO:0081234"}


id: PBO:0030452
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_anaerobic_cell_population_growth","termid":"PBO:0030452"}


id: PBO:0053784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1035","termid":"PBO:0053784"}


id: PBO:0032753
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptide N-glycanase Ngl1","termid":"PBO:0032753"}


id: PBO:0067317
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 403, pseudogene","termid":"PBO:0067317"}


id: MONDO:0036501
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant neoplasm that does not respond to treatment.","definition_xrefs":["NCIT:C120186"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cancer","termid":"MONDO:0004992"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"refractory malignant neoplasm","secondary_identifiers":["MEDGEN:146772","UMLS:C0677936"],"synonyms":[{"name":"clinical resistance","type":"related"},{"name":"refractory cancer","type":"exact"},{"name":"refractory malignant neoplasm","type":"exact"},{"name":"resistant cancer","type":"exact"}],"termid":"MONDO:0036501","xrefs":{"Monarch":{"xref_id":"0036501"}}}


id: MONDO:0015478
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete paramedian facial cleft (obsolete MONDO:0015478)","secondary_identifiers":["Orphanet:155867"],"synonyms":[{"name":"Tessier number 1-1 and 2-12 facial cleft","type":"exact"}],"termid":"MONDO:0015478","xrefs":{"Monarch":{"xref_id":"0015478"}}}


id: GO:0007520
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which non-proliferating myoblasts fuse to existing fibers or to myotubes to form new fibers. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers.","definition_xrefs":["CL:0000056","GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syncytium formation by plasma membrane fusion","termid":"GO:0000768"},{"relation_name":"part_of","term_name":"myotube differentiation","termid":"GO:0014902"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"myoblast fusion","termid":"GO:0007520"}


id: MONDO:1010024
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Atrial fibrillation that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heart disorder, non-human animal","termid":"MONDO:1012982"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"atrial fibrillation, non-human animal","secondary_identifiers":["OMIA:001181"],"termid":"MONDO:1010024","xrefs":{"Monarch":{"xref_id":"1010024"}}}


id: MONDO:0017165
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Bile acid CoA ligase deficiency and defective amidation is an anomaly of bile acid synthesis characterized by fat malabsorption, neonatal cholestasis and growth failure.","definition_xrefs":["Orphanet:276066"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn disorder of bile acid synthesis","termid":"MONDO:0019218"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0002525","MONDO:0005066"],"is_obsolete":false,"name":"bile acid CoA ligase deficiency and defective amidation","secondary_identifiers":["UMLS:C4274079","SCTID:717047007","MEDGEN:905864","GARD:21041"],"termid":"MONDO:0017165","xrefs":{"Monarch":{"xref_id":"0017165"}}}


id: GO:0033141
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the phosphorylation of a serine residue of a STAT (Signal Transducer and Activator of Transcription) protein.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of peptidyl-serine phosphorylation","termid":"GO:0033138"},{"relation_name":"is_a","term_name":"regulation of peptidyl-serine phosphorylation of STAT protein","termid":"GO:0033139"},{"relation_name":"positively_regulates","term_name":"serine phosphorylation of STAT protein","termid":"GO:0042501"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of peptidyl-serine phosphorylation of STAT protein","secondary_identifiers":["GO:1903263"],"synonyms":[{"name":"activation of serine phosphorylation of STAT3 protein","type":"narrow"},{"name":"positive regulation of serine phosphorylation of STAT3 protein","type":"narrow"},{"name":"up regulation of serine phosphorylation of STAT3 protein","type":"narrow"},{"name":"up-regulation of serine phosphorylation of STAT3 protein","type":"narrow"},{"name":"upregulation of serine phosphorylation of STAT3 protein","type":"narrow"}],"termid":"GO:0033141"}


id: GO:0019648
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The pathway in which formaldehyde is used as a carbon source in the xylulose monophosphate cycle. Methylotrophic yeasts, but not bacteria, utilize the xylulose monophosphate cycle to fix formaldehyde and convert it into metabolically useful organic compounds.","definition_xrefs":["MetaCyc:P185-PWY"],"direct_ancestors":[{"relation_name":"is_a","term_name":"formaldehyde assimilation","termid":"GO:0019649"},{"relation_name":"is_a","term_name":"D-xylulose 5-phosphate metabolic process","termid":"GO:0051167"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"formaldehyde assimilation via xylulose monophosphate cycle","synonyms":[{"name":"formaldehyde assimilation via xylulose-5-phosphate cycle","type":"exact"},{"name":"formaldehyde fixation cycle","type":"exact"}],"termid":"GO:0019648"}


id: FYPO:0003770
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A transcription regulation phenotype in which pheromone-responsive positive regulation of transcription from an RNA polymerase II promoter is decreased.","definition_xrefs":["GO:0007329","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal positive regulation of transcription","termid":"FYPO:0000623"},{"relation_name":"is_a","term_name":"abnormal transcriptional response to pheromone","termid":"FYPO:0000984"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000298","FYPO:0006551","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"decreased transcriptional response to pheromone","synonyms":[{"name":"decreased positive regulation of transcription from RNA polymerase II promoter by pheromones","type":"exact"},{"name":"reduced positive regulation of transcription from RNA polymerase II promoter by pheromones","type":"exact"}],"termid":"FYPO:0003770"}


id: GO:0044188
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding the host cell lysosome and separating its contents from the host cell cytoplasm.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell membrane","termid":"GO:0033644"},{"relation_name":"part_of","term_name":"host cell lysosome","termid":"GO:0044187"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell lysosomal membrane","termid":"GO:0044188"}


id: PBO:0071292
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L26 pseudogene 15","termid":"PBO:0071292"}


id: GO:2000616
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of histone H3-K9 acetylation.","definition_xrefs":["GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of histone H3-K9 acetylation (obsolete GO:2000616)","synonyms":[{"name":"negative regulation of histone H3 acetylation at K9","type":"exact"},{"name":"negative regulation of histone H3K9 acetylation","type":"exact"}],"termid":"GO:2000616"}


id: GO:1990833
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + H2O = ADP + phosphate. Catalysis of the removal of clathrin from vesicle membranes, coupled to the hydrolysis of ATP.","definition_xrefs":["PMID:8363588","PMID:6146630"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ATP-dependent activity","termid":"GO:0140657"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674"],"is_obsolete":false,"name":"clathrin-uncoating ATPase activity","termid":"GO:1990833"}


id: FYPO:0004586
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to a combination of caffeine and hydroxyurea. Cells stop growing (and may die) at concentrations of caffeine and hydroxyurea that allow wild type cells to grow.","definition_xrefs":["PomBase:mah","PMID:10757807"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002683"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0001985","FYPO:0000003","FYPO:0005447","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to caffeine and hydroxyurea","synonyms":[{"name":"hypersensitive to caffeine and hydroxyurea","type":"exact"},{"name":"sensitive to caffeine and HU","type":"exact"},{"name":"sensitive to caffeine and hydroxyurea during mitotic cell cycle","type":"related"},{"name":"sensitive to caffeine and hydroxyurea during vegetative growth","type":"exact"},{"name":"sensitive to caffeine and hydroxyurea in combination","type":"exact"}],"termid":"FYPO:0004586"}


id: GO:0018378
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The linkage of cytochromes and other heme proteins to heme via heme-L-cysteine.","definition_xrefs":["RESID:AA0135"],"gene_count":0,"genotype_count":0,"name":"obsolete cytochrome c-heme linkage via heme-L-cysteine (obsolete GO:0018378)","synonyms":[{"name":"cytochrome c-haem linkage via haem-L-cysteine","type":"exact"}],"termid":"GO:0018378"}


id: GO:0004658
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + propanoyl-CoA + HCO3- = ADP + phosphate + (S)-methylmalonyl-CoA.","definition_xrefs":["EC:6.4.1.3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CoA carboxylase activity","termid":"GO:0016421"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016874"],"is_obsolete":false,"name":"propionyl-CoA carboxylase activity","secondary_identifiers":["Reactome:R-HSA-71031","RHEA:23720","MetaCyc:PROPIONYL-COA-CARBOXY-RXN"],"synonyms":[{"name":"PCCase activity","type":"related"},{"name":"propanoyl-CoA:carbon-dioxide ligase (ADP-forming)","type":"related"},{"name":"propionyl coenzyme A carboxylase activity","type":"related"}],"termid":"GO:0004658"}


id: GO:0010765
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of the directed movement of sodium ions (Na+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of sodium ion transport","termid":"GO:0002028"},{"relation_name":"is_a","term_name":"positive regulation of monoatomic ion transport","termid":"GO:0043270"},{"relation_name":"positively_regulates","term_name":"sodium ion transport","termid":"GO:0006814"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of sodium ion transport","termid":"GO:0010765"}


id: PBO:0044340
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CYCS pseudogene 24","termid":"PBO:0044340"}


id: PBO:0084835
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial protein that may have a role in phospholipid metabolism; inner membrane protein with similarity to Mdm32p; required for normal mitochondrial morphology and inheritance; interacts genetically with MMM1, MMM2, MDM10, MDM12, and MDM34","termid":"PBO:0084835"}


id: GO:0150065
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of deacetylase activity.","definition_xrefs":["PMID:19457097","GOC:bc","GOC:aruk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of catalytic activity","termid":"GO:0050790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of deacetylase activity","termid":"GO:0150065"}


id: PR:O94425
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC660.05 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94425"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WW domain-containing protein C660.05 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC660.05","synonyms":[{"name":"Spom972h-SPBC660.05","type":"exact"}],"termid":"PR:O94425"}


id: PBO:0069028
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 273, pseudogene","termid":"PBO:0069028"}


id: PBO:0043421
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CNEP1R1 pseudogene 1","termid":"PBO:0043421"}


id: PBO:0064608
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"POU class 4 homeobox 2","termid":"PBO:0064608"}


id: PBO:0055204
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2629","termid":"PBO:0055204"}


id: GO:0048899
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the anterior lateral line over time, from its formation to the mature structure. The anterior lateral line consists of small sensory patches (neuromasts) located superficially on the skin or just under the skin in fluid-filled canals on the head of all fishes and most amphibians. The anterior lateral line develops from cranial ectodermal placodes situated between the eye and ear.","definition_xrefs":["ISBN:0125296509"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lateral line development","termid":"GO:0048882"},{"relation_name":"part_of","term_name":"anterior lateral line system development","termid":"GO:0048898"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anterior lateral line development","synonyms":[{"name":"anterior LL development","type":"exact"}],"termid":"GO:0048899"}


id: GO:0106148
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of 4-hydroxyindole-3- carbonyl nitrile (4-OH-ICN), a cyanogenic glucoside.","definition_xrefs":["GOC:lr","PMID:26352477"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyanogenic glycoside biosynthetic process","termid":"GO:0019756"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"4-hydroxyindole-3- carbonyl nitrile biosynthesis","termid":"GO:0106148"}


id: PBO:0009796
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UTP-glucose-1-phosphateuridylyltransferase-like","termid":"PBO:0009796"}


id: GO:0097160
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a polychlorinated biphenyl (PCB), a biphenyl compound containing between 2 and 10 chlorine atoms attached to the two benzene rings.","definition_xrefs":["GOC:sjw","PMID:7583672"],"direct_ancestors":[{"relation_name":"is_a","term_name":"binding","termid":"GO:0005488"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"polychlorinated biphenyl binding","synonyms":[{"name":"PCB binding","type":"exact"},{"name":"polychlorobiphenyl binding","type":"exact"}],"termid":"GO:0097160"}


id: GO:0015705
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of iodide into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoatomic anion transport","termid":"GO:0006820"},{"relation_name":"is_a","term_name":"inorganic anion transport","termid":"GO:0015698"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"iodide transport","termid":"GO:0015705"}


id: MONDO:0001079
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"steatorrhea","termid":"MONDO:0001075"},{"relation_name":"is_a","term_name":"pancreas disorder","termid":"MONDO:0002356"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"pancreatic steatorrhea","secondary_identifiers":["SCTID:54576000","UMLS:C0152166","ICD10CM:K90.3","ICD9:579.4","DOID:10610","MEDGEN:508909"],"synonyms":[{"name":"pancreatic steatorrhoea","type":"exact"}],"termid":"MONDO:0001079","xrefs":{"Monarch":{"xref_id":"0001079"}}}


id: MONDO:0017205
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Primary oculocerebral lymphoma is a rare, primary, organ-specific, extranodal non-Hodgkin's lymphoma (typically diffuse large B-cell lymphoma), simultaneously affecting the intraocular compartments (retina, vitreous, optic nerve, uvea and others) and the central nervous system (commonly the cerebellum, spinal cord or pia mater). The presenting symptoms vary depending on the localization of the tumor and may include vitreous floaters or blurred vision, raised intracranial pressure (headache, vomiting, papilledema) and/or focal neurological deficits.","definition_xrefs":["Orphanet:279897"],"direct_ancestors":[{"relation_name":"is_a","term_name":"eye lymphoma","termid":"MONDO:0004034"},{"relation_name":"is_a","term_name":"primary organ-specific lymphoma","termid":"MONDO:0017207"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0005570","MONDO:0004992"],"is_obsolete":false,"name":"primary oculocerebral lymphoma","secondary_identifiers":["icd11.foundation:446504143","MEDGEN:1814439","GARD:21062","UMLS:C5679779"],"synonyms":[{"name":"primary oculocerebral non-Hodgkin lymphoma","type":"exact"}],"termid":"MONDO:0017205","xrefs":{"Monarch":{"xref_id":"0017205"}}}


id: PBO:0055033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2448","termid":"PBO:0055033"}


id: PBO:0087253
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Serine/threonine protein kinase; inhibits pheromone induced signalling downstream of MAPK, possibly at the level of the Ste12p transcription factor; mutant has increased aneuploidy tolerance; PRR2 has a paralog, NPR1, that arose from the whole genome duplication","termid":"PBO:0087253"}


id: GO:0039527
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont interferes with, inhibits or disrupts a TRAF-mediated signal transduction pathway in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:20335533","PMID:28522607","PMID:31311877","PMID:27387501","PMID:33372174","GOC:bf","GOC:sp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated suppression of host signal transduction pathway","termid":"GO:0052029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated suppression of host TRAF-mediated signal transduction","secondary_identifiers":["GO:0039547"],"synonyms":[{"name":"disruption by virus of host TRAF-mediated signal transduction","type":"narrow"},{"name":"inhibition of host TRAF-mediated signal transduction by virus","type":"exact"},{"name":"inhibition of host TRAFs by virus","type":"narrow"},{"name":"negative regulation by virus of host TRAF-mediated signal transduction","type":"broad"},{"name":"suppression by virus of host TRAF activity","type":"exact"},{"name":"suppression by virus of host TRAF-mediated signal transduction","type":"exact"},{"name":"suppression by virus of host tumor necrosis factor receptor-associated factor signaling","type":"exact"}],"termid":"GO:0039527"}


id: PBO:0067304
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 390, pseudogene","termid":"PBO:0067304"}


id: PBO:0109965
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNX7 divergent transcript","termid":"PBO:0109965"}


id: PBO:0068527
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 128, pseudogene","termid":"PBO:0068527"}


id: PBO:0045892
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 gamma pseudogene 4","termid":"PBO:0045892"}


id: MONDO:0060582
data:
  {"annotated_genes":["SJAG_01063"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85557],"is_not":false,"summary":null,"term":"MONDO:0060582"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"mitochondrial disease","termid":"MONDO:0044970"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01063":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025"],"is_obsolete":false,"name":"auditory neuropathy-optic atrophy syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1623572","Orphanet:542585","OMIM:617717","GARD:17983","UMLS:C4521678"],"synonyms":[{"name":"ANOA","type":"related"},{"name":"auditory neuropathy and optic atrophy","type":"related"}],"termid":"MONDO:0060582","terms_by_termid":{"MONDO:0060582":null},"xrefs":{"Monarch":{"xref_id":"0060582"}}}


id: PBO:0002712
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3.4.11.-","termid":"PBO:0002712"}


id: PBO:0073999
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC25A5 antisense RNA 1","termid":"PBO:0073999"}


id: PBO:0088234
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin-like protein","termid":"PBO:0088234"}


id: GO:0008538
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the activation of the proteasome, a large multisubunit complex which performs regulated ubiquitin-dependent cytosolic and nuclear proteolysis.","definition_xrefs":["GOC:rn","PMID:10428771"],"gene_count":0,"genotype_count":0,"name":"obsolete proteasome activator activity (obsolete GO:0008538)","synonyms":[{"name":"PA28","type":"narrow"},{"name":"proteasome activator activity","type":"exact"}],"termid":"GO:0008538"}


id: MONDO:0014428
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal recessive nonsyndromic deafness in which the cause of the disease is a mutation in the EPS8 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hearing loss, autosomal recessive","termid":"MONDO:0019588"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019497"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0019497"],"is_obsolete":false,"name":"autosomal recessive nonsyndromic hearing loss 102","secondary_identifiers":["OMIM:615974","DOID:0110463","GARD:22652","MEDGEN:856149","UMLS:C3892050"],"synonyms":[{"name":"DFNB102","type":"narrow"},{"name":"EPS8 autosomal recessive nonsyndromic deafness","type":"narrow"},{"name":"autosomal recessive deafness 102","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness 102","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness caused by mutation in EPS8","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness type 102","type":"narrow"},{"name":"autosomal recessive nonsyndromic hearing loss 102","type":"exact"},{"name":"deafness, autosomal recessive 102","type":"narrow"},{"name":"deafness, autosomal recessive type 102","type":"narrow"}],"termid":"MONDO:0014428","xrefs":{"Monarch":{"xref_id":"0014428"}}}


id: GO:0001073
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to DNA, typically within region of the promoter and transcribed region, to promote readthrough of a transcription termination site and thus extending the length of the RNA transcript produced. Examples of antitermination factors which bind DNA include the lambda Q protein.","definition_xrefs":["GOC:txnOH","PMID:8332211"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription regulator activity","termid":"GO:0140110"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140110"}],"interesting_parent_ids":["GO:0003674","GO:0140110"],"is_obsolete":false,"name":"transcription antitermination factor activity, DNA binding","synonyms":[{"name":"DNA binding transcription antitermination factor activity","type":"exact"}],"termid":"GO:0001073"}


id: GO:0036515
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemotaxis process that directs the migration of an axon growth cone of a serotonergic neuron to a specific target site in response to a combination of attractive and repulsive cues.","definition_xrefs":["GOC:bf","CL:0000850","GOC:PARL","PMID:21106844"],"direct_ancestors":[{"relation_name":"is_a","term_name":"axon guidance","termid":"GO:0007411"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"serotonergic neuron axon guidance","synonyms":[{"name":"5-HT axon guidance","type":"exact"},{"name":"serotonergic axon guidance","type":"exact"}],"termid":"GO:0036515"}


id: MONDO:0000667
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An agnosia that is a loss of the ability to distinguishing environmental and non-verbal auditory cues including difficulty distinguishing speech from non-speech sounds even though hearing is usually normal.","definition_xrefs":["DOID:0060137"],"direct_ancestors":[{"relation_name":"is_a","term_name":"agnosia","termid":"MONDO:0005638"},{"relation_name":"is_a","term_name":"auditory perceptual disorders","termid":"MONDO:0024422"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"auditory agnosia","secondary_identifiers":["MEDGEN:68602","UMLS:C0234501"],"termid":"MONDO:0000667","xrefs":{"Monarch":{"xref_id":"0000667"}}}


id: GO:0071484
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light intensity stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to light intensity","termid":"GO:0009642"},{"relation_name":"is_a","term_name":"cellular response to light stimulus","termid":"GO:0071482"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to light intensity","termid":"GO:0071484"}


id: PR:Q9P7F1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC2E1P3.05c gene.","definition_xrefs":["UniProtKB:Q9P7F1","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carbohydrate-binding domain-containing protein C2E1P3.05c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2E1P3.05c","synonyms":[{"name":"Spom972h-SPAC2E1P3.05c","type":"exact"}],"termid":"PR:Q9P7F1"}


id: SO:0000984
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"When a nucleotide polymer has only one strand.","direct_ancestors":[{"relation_name":"is_a","term_name":"strand_attribute","termid":"SO:0000983"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"single","termid":"SO:0000984"}


id: GO:0031832
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a type 6 serotonin receptor.","definition_xrefs":["GOC:nln","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled serotonin receptor binding","termid":"GO:0031821"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"type 6 serotonin receptor binding","synonyms":[{"name":"5-hydroxytryptamine 6 receptor binding","type":"exact"},{"name":"type 6 serotonin receptor ligand","type":"narrow"}],"termid":"GO:0031832"}


id: MONDO:0859191
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"biliary, renal, neurologic, and skeletal syndrome","secondary_identifiers":["UMLS:C5561990","MEDGEN:1794200","OMIM:619534"],"termid":"MONDO:0859191","xrefs":{"Monarch":{"xref_id":"0859191"}}}


id: PBO:0074833
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 28B","termid":"PBO:0074833"}


id: GO:0047212
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: trans-2-coumarate + UDP-D-glucose = trans-beta-D-glucosyl-2-hydroxycinnamate + H+ + UDP.","definition_xrefs":["EC:2.4.1.114","RHEA:10236"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glucosyltransferase activity","termid":"GO:0035251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016757"],"is_obsolete":false,"name":"2-coumarate O-beta-glucosyltransferase activity","secondary_identifiers":["KEGG_REACTION:R03710","MetaCyc:2.4.1.114-RXN"],"synonyms":[{"name":"UDP-glucose:trans-2-hydroxycinnamate O-beta-D-glucosyltransferase activity","type":"related"},{"name":"UDPG:o-coumaric acid O-glucosyltransferase activity","type":"related"},{"name":"UDPglucose:trans-2-hydroxycinnamate O-beta-D-glucosyltransferase activity","type":"related"},{"name":"uridine diphosphoglucose-o-coumarate glucosyltransferase activity","type":"related"}],"termid":"GO:0047212"}


id: GO:0019341
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of dibenzo-p-dioxin, a substance composed of two benzene rings linked by two ether bonds.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dibenzo-p-dioxin metabolic process","termid":"GO:0018894"},{"relation_name":"is_a","term_name":"xenobiotic catabolic process","termid":"GO:0042178"},{"relation_name":"is_a","term_name":"small molecule catabolic process","termid":"GO:0044282"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"dibenzo-p-dioxin catabolic process","secondary_identifiers":["MetaCyc:P661-PWY"],"synonyms":[{"name":"dibenzo-p-dioxin breakdown","type":"exact"},{"name":"dibenzo-p-dioxin catabolism","type":"exact"},{"name":"dibenzo-p-dioxin degradation","type":"exact"}],"termid":"GO:0019341"}


id: GO:0141196
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A transposable element silencing mechanism mediated by Piwi-associated RNA (piRNA)-directed DNA methylation. This results in a heterochromatin assembly, a chromatin conformation that is refractory to transcription.","definition_xrefs":["PMID:32674113"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transposable element silencing by heterochromatin formation","termid":"GO:0141005"},{"relation_name":"is_a","term_name":"gene silencing by piRNA-directed DNA methylation","termid":"GO:0141176"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0006325"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0006325"],"is_obsolete":false,"name":"transposable element silencing by piRNA-mediated DNA methylation","synonyms":[{"name":"retrotransposon silencing by piRNA-directed DNA methylation","type":"narrow"},{"name":"transposable element silencing by piRNA-directed DNA methylation","type":"exact"}],"termid":"GO:0141196"}


id: PBO:0088564
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi alpha-1,2-mannosyltransferase Omh2","termid":"PBO:0088564"}


id: PBO:0075189
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nuclear ribonucleoprotein polypeptide G pseudogene 1","termid":"PBO:0075189"}


id: FYPO:0006265
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which vacuoles are larger than normal after a cell has been subjected to hypotonic osmotic stress. Normally, vacuoles enlarge during hypotonic stress, and return to the original smaller size when the stress is relieved, either due to shrinking or fission.","definition_xrefs":["PomBase:mah","PMID:28944093"],"direct_ancestors":[{"relation_name":"is_a","term_name":"large vacuoles during vegetative growth","termid":"FYPO:0000123"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"large vacuoles present following cellular hypotonic response","synonyms":[{"name":"enlarged vacuoles present following cellular hypotonic response","type":"exact"},{"name":"large vacuoles large vacuoles present following cellular hypotonic response during mitotic cell cycle","type":"related"},{"name":"large vacuoles present during recovery from cellular hypotonic response","type":"exact"},{"name":"large vacuoles present following cellular hypotonic response during vegetative growth","type":"exact"},{"name":"large vacuoles present following hypotonic stress","type":"exact"}],"termid":"FYPO:0006265"}


id: PBO:0024478
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Non-Syndromic X-Linked Intellectual Disability","termid":"PBO:0024478"}


id: PATO:0001037
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001037 absolute life span (obsolete PATO:0001037)","termid":"PATO:0001037"}


id: PBO:0058001
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3925","termid":"PBO:0058001"}


id: GO:2001292
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of codeine, an alkaloid found in the opium poppy, Papaver somniferum var. album. Codeine has analgesic, anti-tussive and anti-diarrhoeal properties.","definition_xrefs":["GOC:yaf","PMID:8845855"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isoquinoline alkaloid catabolic process","termid":"GO:0071274"},{"relation_name":"is_a","term_name":"codeine metabolic process","termid":"GO:2001291"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"codeine catabolic process","synonyms":[{"name":"codeine breakdown","type":"exact"},{"name":"codeine catabolism","type":"exact"},{"name":"codeine degradation","type":"exact"}],"termid":"GO:2001292"}


id: MONDO:0012267
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A holoprosencephaly that has material basis in variation in the chromosome region 14q13.","definition_xrefs":["DOID:0110879","PMID:15820313"],"direct_ancestors":[{"relation_name":"is_a","term_name":"holoprosencephaly","termid":"MONDO:0016296"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"holoprosencephaly 8","secondary_identifiers":["OMIM:609408","MESH:C563723","UMLS:C1836254","MEDGEN:322873"],"synonyms":[{"name":"HPE8","type":"exact"},{"name":"holoprosencephaly 8","type":"exact"},{"name":"holoprosencephaly type 8","type":"exact"}],"termid":"MONDO:0012267","xrefs":{"Monarch":{"xref_id":"0012267"}}}


id: PBO:0053560
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 570","termid":"PBO:0053560"}


id: PBO:0034115
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_habitat","termid":"PBO:0034115"}


id: PBO:0113067
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the TOM (translocase of outer membrane) complex; involved in the recognition and initial import steps for all mitochondrially-directed proteins, acting as a receptor for incoming precursor proteins; moonlighting role as a transcriptional regulator of mitochondrial proteins; age-dependent reduction in Tom70p results in mitochondrial dysfunction, a hallmark of aging; localizes to mitochondria–ER contact sites; TOM70 has a paralog, TOM71, that arose from the whole genome duplication","termid":"PBO:0113067"}


id: GO:1902343
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of maltose transport.","definition_xrefs":["GOC:TermGenie","PMID:23770568","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of transport","termid":"GO:0051049"},{"relation_name":"regulates","term_name":"maltose transport","termid":"GO:0015768"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"regulation of maltose transport","termid":"GO:1902343"}


id: GO:0001962
data:
  {"annotated_genes":["SJAG_03149","SJAG_03150"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[111082,111088],"is_not":false,"summary":null,"term":"GO:0001962"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of a galactose residue from a donor molecule, such as GDP-galactose or UDP-galactose, to an oligosaccharide, forming an alpha-(1->3) linkage.","definition_xrefs":["PMID:10854427","GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"galactosyltransferase activity","termid":"GO:0008378"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03149":null,"SJAG_03150":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0016757","GO:0003824"],"is_obsolete":false,"name":"alpha-1,3-galactosyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"isoglobotriaosylceramide synthase","type":"narrow"}],"termid":"GO:0001962","terms_by_termid":{"GO:0001962":null}}


id: MONDO:0956992
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A posterior fossa ependymoma that arises in the posterior fossa with characteristic DNA methylation patterns, including CpG island hypermethylation, global DNA hypomethylation, reduction of nuclear H3 p.K28me3 (K27me3) expression, and EZHIP overexpression.","definition_xrefs":["DOID:0081254"],"direct_ancestors":[{"relation_name":"is_a","term_name":"posterior fossa ependymoma","termid":"MONDO:0850339"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"posterior fossa group A ependymoma","secondary_identifiers":["NCIT:C186450"],"termid":"MONDO:0956992","xrefs":{"Monarch":{"xref_id":"0956992"}}}


id: PBO:0065297
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRSS3 pseudogene 1","termid":"PBO:0065297"}


id: PBO:0083240
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; expression increased by deletion of NAP1","termid":"PBO:0083240"}


id: MONDO:0033570
data:
  {"annotated_genes":["SJAG_05270"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86202],"is_not":false,"summary":null,"term":"MONDO:0033570"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":1,"genes_by_uniquename":{"SJAG_05270":null},"genotype_count":0,"is_obsolete":false,"name":"combined oxidative phosphorylation deficiency 50","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:619025","UMLS:C5436623","MEDGEN:1753519","DOID:0112111"],"synonyms":[{"name":"COMBINED OXIDATIVE PHOSPHORYLATION DEFICIENCY 50","type":"related"},{"name":"COXPD50","type":"related"}],"termid":"MONDO:0033570","terms_by_termid":{"MONDO:0033570":null},"xrefs":{"Monarch":{"xref_id":"0033570"}}}


id: PBO:0113366
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that regulates Arf1p and Arf2p to facilitate Golgi trafficking; binds phosphatidylinositol 4-phosphate, which plays a role in TGN localization; K63-specific Ub chain binding receptor with moderate selectivity; homologous to gamma-adaptin; GGA2 has a paralog, GGA1, that arose from the whole genome duplication","termid":"PBO:0113366"}


id: PR:Q9USK5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A TIP41-like protein that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04568","PANTHER:PTHR21021:SF16","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"type 2A phosphatase activator tip41 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC4B3.16","secondary_identifiers":["UniProtKB:Q9USK5"],"synonyms":[{"name":"PP2A phosphatase activator tip41 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-TIPRL","type":"exact"}],"termid":"PR:Q9USK5"}


id: PBO:0059479
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microseminoprotein, prostate associated","termid":"PBO:0059479"}


id: MONDO:1012947
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inherited bone disorder that occurs in chickens and is characterized by abnormal limb development.","definition_xrefs":["PMID:10912683"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bird disease","termid":"MONDO:0024905"},{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"},{"relation_name":"is_a","term_name":"musculoskeletal system disorder, non-human animal","termid":"MONDO:1011335"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ametapodia, chicken","termid":"MONDO:1012947","xrefs":{"Monarch":{"xref_id":"1012947"}}}


id: PR:O74769
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- bhd1 gene.","definition_xrefs":["UniProtKB:O74769","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"folliculin-like protein bhd1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC24C6.08c","synonyms":[{"name":"Spom972h-bhd1","type":"exact"}],"termid":"PR:O74769"}


id: PBO:0051928
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"integrin subunit beta like 1","termid":"PBO:0051928"}


id: GO:0010071
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The specification of a meristem which will give rise to a primary or lateral root.","definition_xrefs":["GOC:ascb_2009","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"embryonic meristem initiation","termid":"GO:0090421"},{"relation_name":"part_of","term_name":"root morphogenesis","termid":"GO:0010015"},{"relation_name":"part_of","term_name":"embryonic meristem development","termid":"GO:0048508"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"root meristem specification","termid":"GO:0010071"}


id: FYPO:0000854
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nucleosome positioning in regions of euchromatin is abnormal. Nucleosome positioning is the ordering of successions of nucleosomes into regular arrays so that nucleosomes are positioned at defined distances from one another.","definition_xrefs":["PomBase:mah","GO:0016584"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nucleosome positioning","termid":"FYPO:0000853"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000641","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abnormal nucleosome positioning in euchromatin","synonyms":[{"name":"abnormal nucleosome occupancy in euchromatin","type":"related"},{"name":"abnormal nucleosome positioning in euchromatin during mitotic cell cycle","type":"related"},{"name":"abnormal nucleosome positioning in euchromatin during vegetative growth","type":"exact"},{"name":"abnormal nucleosome spacing in euchromatin","type":"exact"}],"termid":"FYPO:0000854"}


id: PBO:0073055
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SCYL2 pseudogene 1","termid":"PBO:0073055"}


id: GO:1904910
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of establishment of RNA localization to telomere.","definition_xrefs":["GOC:BHF_telomere","GOC:BHF","GOC:rph","GOC:TermGenie","PMID:26586433","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of localization","termid":"GO:0032879"},{"relation_name":"regulates","term_name":"establishment of RNA localization to telomere","termid":"GO:0097694"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of establishment of RNA localization to telomere","synonyms":[{"name":"regulation of establishment of RNA localisation to telomere","type":"exact"}],"termid":"GO:1904910"}


id: MONDO:0002789
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A term that refers to vascular neoplasms with a prominent hemangiopericytic growth pattern.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pericytic neoplasm","termid":"MONDO:0002604"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hemangiopericytic tumor","secondary_identifiers":["MEDGEN:99196","DOID:3850","UMLS:C0476144","NCIT:C7076"],"synonyms":[{"name":"hemangiopericytic neoplasm","type":"exact"}],"termid":"MONDO:0002789","xrefs":{"Monarch":{"xref_id":"0002789"}}}


id: PBO:0016089
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"di-trans,poly-cis-decaprenylcistransferase Nus1 (predicted)","termid":"PBO:0016089"}


id: PBO:0059566
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metallothionein 1I, pseudogene","termid":"PBO:0059566"}


id: FYPO:0007827
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actin contractile ring organization is normal (i.e. indistinguishable from wild type). The process results in the assembly, arrangement of constituent parts, or disassembly of the actomyosin contractile ring.","definition_xrefs":["GO:0044837","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular process during vegetative growth","termid":"FYPO:0001319"},{"relation_name":"is_a","term_name":"normal cellular component organization","termid":"FYPO:0006003"},{"relation_name":"is_a","term_name":"normal cell cycle process","termid":"FYPO:0006915"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001312","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"normal actomyosin contractile ring organization","synonyms":[{"name":"normal actomyosin contractile ring organisation","type":"exact"},{"name":"normal actomyosin contractile ring organization during mitotic cell cycle","type":"related"},{"name":"normal actomyosin contractile ring organization during vegetative growth","type":"exact"},{"name":"normal contractile ring organization","type":"exact"}],"termid":"FYPO:0007827"}


id: MONDO:0034641
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare genetic hyperkinetic movement disorder (obsolete MONDO:0034641)","secondary_identifiers":["Orphanet:496916"],"termid":"MONDO:0034641","xrefs":{"Monarch":{"xref_id":"0034641"}}}


id: GO:0070911
data:
  {"annotated_genes":["SJAG_04778"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88494],"is_not":false,"summary":null,"term":"GO:0070911"}]},"cv_name":"biological_process","definition":"The nucleotide-excision repair process in which DNA lesions are removed from nontranscribed strands and from transcriptionally silent regions over the entire genome.","definition_xrefs":["PMID:10197977","PMID:18794354"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide-excision repair","termid":"GO:0006289"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04778":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006281"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006281","GO:0006259","GO:0008150"],"is_obsolete":false,"name":"global genome nucleotide-excision repair","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-5696399"],"synonyms":[{"name":"GG-NER","type":"exact"},{"name":"GGR","type":"exact"},{"name":"global genome NER","type":"exact"},{"name":"global genomic nucleotide-excision repair","type":"exact"},{"name":"global genomic repair","type":"exact"}],"termid":"GO:0070911","terms_by_termid":{"GO:0070911":null}}


id: GO:0061949
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of the discharge, by sperm, of a single, anterior secretory granule before the sperm reaches to the zona pellucida of the oocyte. The process begins with the fusion of the outer acrosomal membrane with the sperm plasma membrane and ends with the exocytosis of the acrosomal contents.","definition_xrefs":["PMID:23430248","PMID:22228629"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of reproductive process","termid":"GO:2000241"},{"relation_name":"regulates","term_name":"premature acrosome loss","termid":"GO:0061948"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of premature acrosome loss","termid":"GO:0061949"}


id: PBO:0061320
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear pore complex interacting protein family member A7","termid":"PBO:0061320"}


id: GO:0015414
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + nitrate(out) = ADP + phosphate + nitrate(in).","definition_xrefs":["RHEA:13181"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nitrate transmembrane transporter activity","termid":"GO:0015112"},{"relation_name":"is_a","term_name":"ATPase-coupled inorganic anion transmembrane transporter activity","termid":"GO:0043225"},{"relation_name":"is_a","term_name":"ABC-type transporter activity","termid":"GO:0140359"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"ABC-type nitrate transporter activity","secondary_identifiers":["EC:7.3.2.4","MetaCyc:3.6.3.26-RXN"],"synonyms":[{"name":"ATPase-coupled nitrate transmembrane transporter activity","type":"related"},{"name":"nitrate ABC transporter","type":"exact"},{"name":"nitrate transmembrane-transporting ATPase activity","type":"related"},{"name":"nitrate transporting ATPase activity","type":"related"},{"name":"nitrate-transporting ATPase activity","type":"related"}],"termid":"GO:0015414"}


id: MONDO:0006798
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A symptom complex resulting from ingesting excessive amounts of vitamin A.","definition_xrefs":["MESH:D006986"],"direct_ancestors":[{"relation_name":"is_a","term_name":"overnutrition","termid":"MONDO:0003916"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypervitaminosis A","secondary_identifiers":["MedDRA:10020916","ICD9:278.2","UMLS:C0020579","SCTID:64559002","icd11.foundation:1465667896","MEDGEN:9378","EFO:1000978","DOID:9972","ICD10CM:E67.0"],"synonyms":[{"name":"hypervitaminosis type A","type":"exact"}],"termid":"MONDO:0006798","xrefs":{"Monarch":{"xref_id":"0006798"}}}


id: PBO:0091276
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-type Cyclin Pombe","termid":"PBO:0091276"}


id: PBO:0065795
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"R3H domain containing 2 pseudogene 1","termid":"PBO:0065795"}


id: GO:0002526
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Inflammation which comprises a rapid, short-lived, relatively uniform response to acute injury or antigenic challenge and is characterized by accumulations of fluid, plasma proteins, and granulocytic leukocytes. An acute inflammatory response occurs within a matter of minutes or hours, and either resolves within a few days or becomes a chronic inflammatory response.","definition_xrefs":["ISBN:0781735149","GOC:add","GO_REF:0000022"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inflammatory response","termid":"GO:0006954"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"acute inflammatory response","termid":"GO:0002526"}


id: GO:0046070
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving dGTP, guanosine triphosphate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine deoxyribonucleotide metabolic process","termid":"GO:0009151"},{"relation_name":"is_a","term_name":"purine deoxyribonucleoside triphosphate metabolic process","termid":"GO:0009215"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"dGTP metabolic process","synonyms":[{"name":"dGTP metabolism","type":"exact"}],"termid":"GO:0046070"}


