# terms

id: MONDO:0004715
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A carcinoma in situ involving a liver.","definition_xrefs":["MONDO:patterns/carcinoma_in_situ"],"direct_ancestors":[{"relation_name":"is_a","term_name":"in situ carcinoma","termid":"MONDO:0004647"},{"relation_name":"is_a","term_name":"carcinoma of liver and intrahepatic biliary tract","termid":"MONDO:0018531"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0002515","MONDO:0004992"],"is_obsolete":false,"name":"liver carcinoma in situ","secondary_identifiers":["SCTID:92644006","UMLS:C0345908","ICD10CM:D01.5","MEDGEN:577201","DOID:9132","ICD9:230.8"],"synonyms":[{"name":"carcinoma in situ of liver","type":"exact"},{"name":"carcinoma in situ of liver and biliary system","type":"exact"},{"name":"carcinoma in situ of liver, gallbladder and bile ducts","type":"exact"},{"name":"liver in situ carcinoma","type":"exact"},{"name":"stage 0 liver carcinoma","type":"exact"}],"termid":"MONDO:0004715","xrefs":{"Monarch":{"xref_id":"0004715"}}}


id: GO:0036403
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: arachidonate + O2 = (5Z,8S,9E,11Z,14Z)-8-hydroperoxyicosa-5,9,11,14-tetraenoate.","definition_xrefs":["GOC:lb","PMID:10625675","RHEA:38675"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"arachidonate 8(S)-lipoxygenase activity","secondary_identifiers":["KEGG_REACTION:R07053"],"synonyms":[{"name":"8(S)-lipoxygenase activity","type":"broad"},{"name":"8-lipoxygenase (S-type)","type":"broad"}],"termid":"GO:0036403"}


id: GO:0015218
data:
  {"annotated_genes":["SJAG_00154"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[79544],"is_not":false,"summary":null,"term":"GO:0015218"}]},"cv_name":"molecular_function","definition":"Enables the transfer of a pyrimidine nucleotide, any compound consisting of a pyrimidine nucleoside esterified with (ortho)phosphate, from one side of a membrane to the other.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotide transmembrane transporter activity","termid":"GO:0015215"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00154":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"pyrimidine nucleotide transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0015218","terms_by_termid":{"GO:0015218":null}}


id: GO:0004511
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-tyrosine + tetrahydrobiopterin + O2 = 3,4-dihydroxy-L-phenylalanine + 4-alpha-hydroxytetrahydrobiopterin + H2O.","definition_xrefs":["EC:1.14.16.2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen","termid":"GO:0016714"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"tyrosine 3-monooxygenase activity","secondary_identifiers":["MetaCyc:TYROSINE-3-MONOOXYGENASE-RXN","Reactome:R-HSA-209823","RHEA:18201"],"synonyms":[{"name":"L-tyrosine hydroxylase activity","type":"related"},{"name":"L-tyrosine,tetrahydrobiopterin:oxygen oxidoreductase (3-hydroxylating)","type":"related"},{"name":"tyrosine 3-hydroxylase activity","type":"exact"},{"name":"tyrosine hydroxylase activity","type":"exact"}],"termid":"GO:0004511"}


id: MONDO:0010087
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Sugarman brachydactyly is a rare, genetic, congenital limb malformation characterized by brachydactyly of fingers, with major proximal phalangeal shortening and immobile proximal interphalangeal joints, as well as dorsally and proximally placed, non-articulating great toes (with or without angulation). Radiographic findings of hands include bilateral double first metacarpals and biphalangeal fifth fingers. There have been no further descriptions in the literature since 1982.","definition_xrefs":["Orphanet:498602"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital limb malformation","termid":"MONDO:0019054"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sugarman brachydactyly","secondary_identifiers":["MEDGEN:1777636","GARD:5058","DOID:0110979","UMLS:C5399870","OMIM:272150"],"synonyms":[{"name":"Sugarman-Hager-Kulik syndrome","type":"exact"},{"name":"Sugarman brachydactyly","type":"exact"},{"name":"brachydactyly of the hands and feet with duplication of the first toes","type":"related"},{"name":"brachydactyly with Major proximal phalangeal shortening","type":"related"},{"name":"brachydactyly with major proximal phalangeal shortening","type":"exact"}],"termid":"MONDO:0010087","xrefs":{"Monarch":{"xref_id":"0010087"}}}


id: PR:Q92354
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rpl2401 gene.","definition_xrefs":["UniProtKB:Q92354","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"60S ribosomal protein L24-A (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC6G9.09c","synonyms":[{"name":"Spom972h-rpl2401","type":"exact"}],"termid":"PR:Q92354"}


id: PR:O14073
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPACUNK4.08 gene.","definition_xrefs":["UniProtKB:O14073","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dipeptidyl aminopeptidase C2E11.08 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPACUNK4.08","synonyms":[{"name":"Spom972h-SPACUNK4.08","type":"exact"}],"termid":"PR:O14073"}


id: FYPO:0008118
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mRNA splicing via the spliceosome is decreased for specific introns with longer than average (>21 bp) branch site to acceptor distance.","definition_xrefs":["PMID:36095128"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased mRNA splicing, via spliceosome, intron-specific","termid":"FYPO:0003244"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000294","FYPO:0000002","FYPO:0006551","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"decreased splicing of introns with branch point-distant 3’-splice site","synonyms":[{"name":"Inefficient excision of introns with branch point (BP)-distant 3’-splice site (ss)","type":"exact"}],"termid":"FYPO:0008118"}


id: FYPO:0007694
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the activity of a DNA strand exchange activator is absent.","definition_xrefs":["PMID:33493431","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic activity regulator phenotype","termid":"FYPO:0007690"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000652"],"is_obsolete":false,"name":"abolished DNA strand exchange activator activity","synonyms":[{"name":"DNA strand exchange activator activity abolished","type":"exact"},{"name":"abolished RecA-family recombinase activator activity","type":"exact"},{"name":"abolished positive regulation of RecA-family recombinase activity","type":"related"}],"termid":"FYPO:0007694"}


id: PBO:0089905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytoskeletal signaling protein Slm1","termid":"PBO:0089905"}


id: PBO:0080131
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VANGL planar cell polarity protein 1","termid":"PBO:0080131"}


id: FYPO:0004015
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which a cell contains a normal number of mitochondria.","definition_xrefs":["PMID:2065367","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal mitochondrion","termid":"FYPO:0006034"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"mitochondria present in normal numbers","synonyms":[{"name":"mitochondria present in normal numbers during mitotic cell cycle","type":"exact"},{"name":"mitochondria present in normal numbers during vegetative growth","type":"exact"}],"termid":"FYPO:0004015"}


id: PBO:0073540
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SH3 domain containing ring finger 2","termid":"PBO:0073540"}


id: PBO:0043219
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CLK4 associating serine/arginine rich protein","termid":"PBO:0043219"}


id: GO:0102821
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: bixin + S-adenosyl-L-methionine = bixin dimethyl ester + S-adenosyl-L-homocysteine.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete bixin methyltransferase activity (obsolete GO:0102821)","termid":"GO:0102821"}


id: GO:0009970
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of sulfate.","definition_xrefs":["GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to starvation","termid":"GO:0009267"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to sulfate starvation","synonyms":[{"name":"cellular response to sulphate starvation","type":"exact"}],"termid":"GO:0009970"}


id: MONDO:0700224
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any retinopathy caused by variants in the PDE6A gene.","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited retinal dystrophy","termid":"MONDO:0019118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"PDE6A-related retinopathy","synonyms":[{"name":"PDE6A-related retinopathy","type":"exact"}],"termid":"MONDO:0700224","xrefs":{"Monarch":{"xref_id":"0700224"}}}


id: SO:0001589
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant which causes a disruption of the translational reading frame, because the number of nucleotides inserted or deleted is not a multiple of three.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein_altering_variant","termid":"SO:0001818"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"frameshift_variant","secondary_identifiers":["http://snpeff.sourceforge.net/SnpEff_manual.html","loinc:LA6694-9","http://vat.gersteinlab.org/formats.php","http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences","http://snp.gs.washington.edu/SeattleSeqAnnotation137/HelpHowToUse.jsp"],"synonyms":[{"name":"VEP:frameshift_variant","type":"exact"},{"name":"frameshift variant","type":"exact"},{"name":"frameshift_","type":"exact"},{"name":"frameshift_coding","type":"exact"},{"name":"snpEff:FRAME_SHIFT","type":"exact"},{"name":"ANNOVAR:frameshift block substitution","type":"related"},{"name":"ANNOVAR:frameshift substitution","type":"related"},{"name":"Jannovar:frameshift_variant","type":"exact"},{"name":"Seattleseq:frameshift","type":"exact"},{"name":"Seattleseq:frameshift-near-splice","type":"related"},{"name":"VAAST:frameshift_variant","type":"exact"},{"name":"VAT:deletionFS","type":"narrow"},{"name":"VAT:insertionFS","type":"narrow"}],"termid":"SO:0001589"}


id: PBO:0046360
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endosulfine alpha pseudogene 2","termid":"PBO:0046360"}


id: PBO:0113470
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of TORC2, a regulator of plasma membrane (PM) homeostasis; C-terminal PH domain binds to phosphoinositide-(4,5)-bisphosphate (PI(4,5)P2); binds directly to Ypk2p a Tor2p substrate and downstream TORC2 effector through a conserved central CRIM domain; acts with Tsc11p as a scaffold important for the integrity of the TORC2 complex; dispensable for PM localization of TORC2; role in regulating actin organization and growth control; orthologous to human MAPKAP1/SIN1","termid":"PBO:0113470"}


id: SO:0000151
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A piece of DNA that has been inserted in a vector so that it can be propagated in a host bacterium or some other organism.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent","termid":"SO:0000695"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"clone","secondary_identifiers":["http:http\\://en.wikipedia.org/wiki/Clone_(genetics)"],"termid":"SO:0000151"}


id: GO:0010941
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death.","definition_xrefs":["GOC:dph","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of cell death (obsolete GO:0010941)","termid":"GO:0010941"}


id: GO:0141067
data:
  {"annotated_genes":["SJAG_00359","SJAG_04054","SJAG_03266","SJAG_04268","SJAG_02496","SJAG_04637","SJAG_03319"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72600,94602,118127],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019676"},{"annotations":[115134,101553],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019740"},{"annotations":[114214,70952],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0006808"}]},"cv_name":"biological_process","definition":"A homeostatic process involved in the maintenance of a steady state level of nitrogen within a cell.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular chemical homeostasis","termid":"GO:0055082"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00359":null,"SJAG_02496":null,"SJAG_03266":null,"SJAG_03319":null,"SJAG_04054":null,"SJAG_04268":null,"SJAG_04637":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"intracellular nitrogen homeostasis","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"cellular nitrogen homeostasis","type":"exact"},{"name":"nitrogen homeostasis","type":"exact"}],"termid":"GO:0141067","terms_by_termid":{"GO:0006808":null,"GO:0019676":null,"GO:0019740":null}}


id: MONDO:0033537
data:
  {"annotated_genes":["SJAG_02201"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85702],"is_not":false,"summary":null,"term":"MONDO:0033537"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"combined oxidative phosphorylation deficiency","termid":"MONDO:0000732"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02201":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004069"}],"interesting_parent_ids":["MONDO:0004069","MONDO:0005066"],"is_obsolete":false,"name":"combined oxidative phosphorylation deficiency 47","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5436476","DOID:0112114","MEDGEN:1775535","OMIM:618958"],"synonyms":[{"name":"COMBINED OXIDATIVE PHOSPHORYLATION DEFICIENCY 47","type":"related"},{"name":"COXPD47","type":"related"}],"termid":"MONDO:0033537","terms_by_termid":{"MONDO:0033537":null},"xrefs":{"Monarch":{"xref_id":"0033537"}}}


id: GO:0034299
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of a spore following the marked enlargement of part of a cell before separation by a septum. Blastospores are a type of asexual spore found in some fungi, most notably the class Glomeromycota.","definition_xrefs":["PMID:30910084","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"conidium formation","termid":"GO:0048315"},{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"reproductive blastospore formation","synonyms":[{"name":"blastoconidium formation","type":"exact"}],"termid":"GO:0034299"}


id: PBO:0053697
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 898","termid":"PBO:0053697"}


id: PBO:0078041
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha joining 31","termid":"PBO:0078041"}


id: GO:0030009
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A cofactor for the serine protease complement factor I.","definition_xrefs":["ISBN:0198547684"],"gene_count":0,"genotype_count":0,"name":"obsolete complement factor H activity (obsolete GO:0030009)","synonyms":[{"name":"complement factor H activity","type":"exact"}],"termid":"GO:0030009"}


id: FYPO:0002328
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to terbinafine. Cells stop growing (and may die) at a concentration of terbinafine that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000139","FYPO:0002683","FYPO:0000003","FYPO:0005447"],"is_obsolete":false,"name":"sensitive to terbinafine","synonyms":[{"name":"hypersensitive to terbinafine","type":"exact"},{"name":"sensitive to terbinafine during mitotic cell cycle","type":"related"},{"name":"sensitive to terbinafine during vegetative growth","type":"exact"}],"termid":"FYPO:0002328"}


id: MONDO:0009060
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cystic disease of lung","secondary_identifiers":["OMIM:219600","UMLS:C0555214","MESH:C563237","MEDGEN:640840"],"synonyms":[{"name":"cystic disease of lung","type":"exact"}],"termid":"MONDO:0009060","xrefs":{"Monarch":{"xref_id":"0009060"}}}


id: MOD:00996
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"3'-bromo-L-tyrosine","termid":"MOD:01025"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"(81)Br labeled 3'-bromotyrosine","termid":"MOD:00996"}


id: MONDO:1012780
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any epidermolysis bullosa simplex that occurs in cattle due to a mutation in the KRT5 gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epidermolysis bullosa simplex, cattle","termid":"MONDO:1011499"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"epidermolysis bullosa simplex, KRT5-related, cattle","secondary_identifiers":["OMIA:002081-9913"],"termid":"MONDO:1012780","xrefs":{"Monarch":{"xref_id":"1012780"}}}


id: SO:0001770
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A variant that does not affect the function of the gene or cause disease.","direct_ancestors":[{"relation_name":"is_a","term_name":"variant_phenotype","termid":"SO:0001769"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"benign_variant","synonyms":[{"name":"benign variant","type":"exact"}],"termid":"SO:0001770"}


id: PBO:0038863
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenosine deaminase RNA specific","termid":"PBO:0038863"}


id: GO:1900106
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of hyaluranon cable assembly.","definition_xrefs":["GOC:TermGenie","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular component biogenesis","termid":"GO:0044089"},{"relation_name":"is_a","term_name":"positive regulation of cellular component organization","termid":"GO:0051130"},{"relation_name":"is_a","term_name":"regulation of hyaluranon cable assembly","termid":"GO:1900104"},{"relation_name":"positively_regulates","term_name":"hyaluranon cable assembly","termid":"GO:0036118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"positively_regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"positive regulation of hyaluranon cable assembly","synonyms":[{"name":"activation of HA cable assembly","type":"exact"},{"name":"activation of hyaluranon cable assembly","type":"narrow"},{"name":"positive regulation of HA cable assembly","type":"exact"},{"name":"up regulation of HA cable assembly","type":"exact"},{"name":"up regulation of hyaluranon cable assembly","type":"exact"},{"name":"up-regulation of HA cable assembly","type":"exact"},{"name":"up-regulation of hyaluranon cable assembly","type":"exact"},{"name":"upregulation of HA cable assembly","type":"exact"},{"name":"upregulation of hyaluranon cable assembly","type":"exact"}],"termid":"GO:1900106"}


id: GO:0046446
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving purine alkaloids, compounds derived from purine and composed of an N-containing double ring structure.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alkaloid metabolic process","termid":"GO:0009820"},{"relation_name":"is_a","term_name":"purine-containing compound metabolic process","termid":"GO:0072521"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"purine alkaloid metabolic process","synonyms":[{"name":"purine alkaloid metabolism","type":"exact"}],"termid":"GO:0046446"}


id: GO:0061576
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that catalyzes the reaction acyl-CoA + sphingosine = CoA + N-acylsphingosine. In S. cerevisiae it contains three subunits: lag1, lac1 and lip1.","definition_xrefs":["PMID:15692566","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"acyl-CoA ceramide synthase complex","termid":"GO:0061576"}


id: PBO:0069350
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 610, pseudogene","termid":"PBO:0069350"}


id: MONDO:1010446
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Dilated cardiomyopathy that occurs in sea otter.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dilated cardiomyopathy, non-human animal","termid":"MONDO:1010011"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dilated cardiomyopathy, sea otter","secondary_identifiers":["OMIA:000162-34882"],"termid":"MONDO:1010446","xrefs":{"Monarch":{"xref_id":"1010446"}}}


id: PBO:0050374
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 77","termid":"PBO:0050374"}


id: PBO:0000153
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-C2H2 type","termid":"PBO:0000153"}


id: GO:0007215
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by the binding of glutamate to its receptor on the surface of a target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["PMID:9131252","GOC:signaling","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell surface receptor signaling pathway","termid":"GO:0007166"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"glutamate receptor signaling pathway","synonyms":[{"name":"glutamate signaling pathway","type":"exact"},{"name":"glutamate signalling pathway","type":"exact"}],"termid":"GO:0007215"}


id: PBO:0003085
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae cdc13-1","termid":"PBO:0003085"}


id: GO:1903481
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of actin filament organization involved in mitotic actomyosin contractile ring assembly.","definition_xrefs":["GO_REF:0000058","GOC:mtg_cell_cycle","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of actin filament organization involved in mitotic actomyosin contractile ring assembly (obsolete GO:1903481)","synonyms":[{"name":"down regulation of actin filament organisation involved in contractile ring assembly involved in mitotic cytokinesis","type":"exact"},{"name":"down regulation of actin filament organisation involved in mitotic actomyosin contractile ring assembly","type":"exact"},{"name":"down regulation of actin filament organization involved in mitotic actomyosin contractile ring assembly","type":"exact"},{"name":"down-regulation of actin filament organisation involved in contractile ring assembly involved in mitotic cytokinesis","type":"exact"},{"name":"down-regulation of actin filament organisation involved in mitotic actomyosin contractile ring assembly","type":"exact"},{"name":"down-regulation of actin filament organization involved in mitotic actomyosin contractile ring assembly","type":"exact"},{"name":"downregulation of actin filament organisation involved in contractile ring assembly involved in mitotic cytokinesis","type":"exact"},{"name":"downregulation of actin filament organisation involved in mitotic actomyosin contractile ring assembly","type":"exact"},{"name":"downregulation of actin filament organization involved in mitotic actomyosin contractile ring assembly","type":"exact"},{"name":"inhibition of actin filament organisation involved in contractile ring assembly involved in mitotic cytokinesis","type":"narrow"},{"name":"inhibition of actin filament organisation involved in mitotic actomyosin contractile ring assembly","type":"narrow"},{"name":"inhibition of actin filament organization involved in mitotic actomyosin contractile ring assembly","type":"narrow"},{"name":"negative regulation of actin filament organisation involved in contractile ring assembly involved in mitotic cytokinesis","type":"exact"},{"name":"negative regulation of actin filament organisation involved in mitotic actomyosin contractile ring assembly","type":"exact"}],"termid":"GO:1903481"}


id: PBO:0048751
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycine-N-acyltransferase like 2","termid":"PBO:0048751"}


id: GO:0098868
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The increase in size or mass of a bone that contributes to the shaping of that bone.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organ growth","termid":"GO:0035265"},{"relation_name":"part_of","term_name":"bone development","termid":"GO:0060348"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"bone growth","termid":"GO:0098868"}


id: PBO:0066241
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein 48","termid":"PBO:0066241"}


id: PBO:0026917
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_18S_rRNA_acetylation","termid":"PBO:0026917"}


id: PBO:0087878
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcriptional regulator; partially nonfunctional in S288C strains but has a major role in catabolite repression and ethanol response in some other strains; involved in response to toxic agents; phosphorylation by Snf1p or the Mec1p pathway inactivates Mig3p, allowing induction of damage response genes","termid":"PBO:0087878"}


id: PBO:0072120
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S14 pseudogene 9","termid":"PBO:0072120"}


id: PBO:0050624
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydroxysteroid dehydrogenase like 2","termid":"PBO:0050624"}


id: PR:O59739
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- bag102 gene.","definition_xrefs":["UniProtKB:O59739","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BAG family molecular chaperone regulator 1B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC530.03c","synonyms":[{"name":"BAG-1B (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-bag102","type":"exact"}],"termid":"PR:O59739"}


id: PBO:0002790
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lipin Ned1","termid":"PBO:0002790"}


id: GO:0070661
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The expansion of a leukocyte population by cell division.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell population proliferation","termid":"GO:0008283"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"leukocyte proliferation","termid":"GO:0070661"}


id: PBO:0057684
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1273c","termid":"PBO:0057684"}


id: MONDO:0013588
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Perrault syndrome in which the cause of the disease is a mutation in the CLPP gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Perrault syndrome","termid":"MONDO:0017312"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005047"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0004069","MONDO:0005047","MONDO:0005066","MONDO:0006025"],"is_obsolete":false,"name":"Perrault syndrome 3","secondary_identifiers":["GARD:15760","UMLS:C3808414","MEDGEN:814744","OMIM:614129"],"synonyms":[{"name":"CLPP Perrault syndrome","type":"exact"},{"name":"PRLTS3","type":"related"},{"name":"Perrault syndrome 3","type":"exact"},{"name":"Perrault syndrome caused by mutation in CLPP","type":"exact"},{"name":"Perrault syndrome type 3","type":"exact"},{"name":"deafness, autosomal recessive 81","type":"related"},{"name":"deafness, autosomal recessive 81, formerly","type":"related"}],"termid":"MONDO:0013588","xrefs":{"Monarch":{"xref_id":"0013588"}}}


id: MONDO:0018439
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Inflammation of the colon that is characterized by eosinic infiltration.","definition_xrefs":["NCIT:C27053"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microscopic colitis","termid":"MONDO:0000702"},{"relation_name":"is_a","term_name":"eosinophilic gastroenteritis","termid":"MONDO:0016129"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0004335"],"is_obsolete":false,"name":"eosinophilic colitis","secondary_identifiers":["GARD:21715","UMLS:C0267448","SCTID:29120000","MEDGEN:75633","Orphanet:402035","ICD10CM:K52.82","ICD9:558.42","icd11.foundation:1169803773"],"termid":"MONDO:0018439","xrefs":{"Monarch":{"xref_id":"0018439"}}}


id: FYPO:0005981
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the termination of RNA transcription RNA polymerase I from a DNA template is abnormal.","definition_xrefs":["PomBase:mah","GO:0006363"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal transcription termination","termid":"FYPO:0003556"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000294","FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0006551"],"is_obsolete":false,"name":"abnormal termination of RNA polymerase I transcription","synonyms":[{"name":"abnormal RNA polymerase I transcription termination","type":"exact"},{"name":"abnormal termination of RNA polymerase I transcription during mitotic cell cycle","type":"related"},{"name":"abnormal termination of RNA polymerase I transcription during vegetative growth","type":"exact"},{"name":"abnormal transcription termination from Pol I promoter","type":"exact"},{"name":"abnormal transcription termination from RNA polymerase I promoter","type":"exact"}],"termid":"FYPO:0005981"}


id: GO:0097428
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The transfer of an assembled iron-sulfur cluster from a scaffold protein to an acceptor protein that contributes to the attainment of the full functional capacity of a protein.","definition_xrefs":["PMID:21977977","PMID:18322036","GOC:al","GOC:mah","PMID:11939799"],"gene_count":0,"genotype_count":0,"name":"obsolete protein maturation by iron-sulfur cluster transfer (obsolete GO:0097428)","termid":"GO:0097428"}


id: MONDO:1010137
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Bullous pemphigoid that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inflammatory disease, non-human animal","termid":"MONDO:1011327"},{"relation_name":"is_a","term_name":"integumentary system disorder, non-human animal","termid":"MONDO:1011328"},{"relation_name":"is_a","term_name":"autoimmune disease, non-human animal","termid":"MONDO:1012985"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bullous pemphigoid, non-human animal","secondary_identifiers":["OMIA:001183"],"termid":"MONDO:1010137","xrefs":{"Monarch":{"xref_id":"1010137"}}}


id: PBO:0065451
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome 26S subunit, ATPase, 6 pseudogene 2","termid":"PBO:0065451"}


id: PBO:0051985
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Janus kinase 1","termid":"PBO:0051985"}


id: PBO:0064669
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A pseudogene 4","termid":"PBO:0064669"}


id: FYPO:0007841
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of peptide alpha-N-acetyltransferase activity is decreased.","definition_xrefs":["PomBase:mah","PMID:34019809"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased catalytic activity","termid":"FYPO:0000663"},{"relation_name":"is_a","term_name":"abnormal peptide alpha-N-acetyltransferase activity","termid":"FYPO:0007839"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0001985","FYPO:0000661","FYPO:0000654","FYPO:0000652"],"is_obsolete":false,"name":"decreased peptide alpha-N-acetyltransferase activity","synonyms":[{"name":"decreased NAT activity","type":"related"},{"name":"decreased protein N-terminal acetyltransferase activity","type":"exact"},{"name":"reduced peptide alpha-N-acetyltransferase activity","type":"exact"}],"termid":"FYPO:0007841"}


id: GO:0009781
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Processes by which a molecule of water is oxidized during photosynthesis. P680+, the photochemically oxidized reaction-center chlorophyll of PSII, is a strong biological oxidant. The reduction potential of P680+ is more positive than that of water, and thus it can oxidize water to give O2 and H+ ions. The oxygen escapes as a gas while the H+ ions remain in solution inside the thylakoid vesicle.","definition_xrefs":["GOC:jid","ISBN:0716743663","ISBN:0816017360"],"gene_count":0,"genotype_count":0,"name":"obsolete photosynthetic water oxidation (obsolete GO:0009781)","synonyms":[{"name":"photosynthetic water oxidation","type":"exact"}],"termid":"GO:0009781"}


id: PBO:0012270
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"20S proteiasome complex subunit beta 7 (predicted)","termid":"PBO:0012270"}


id: PBO:0052040
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"JunD proto-oncogene, AP-1 transcription factor subunit","termid":"PBO:0052040"}


id: PBO:0031499
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_acidity","termid":"PBO:0031499"}


id: MONDO:0002561
data:
  {"annotated_genes":["SJAG_05182","SJAG_02056","SJAG_04323","SJAG_04706","SJAG_03824","SJAG_02131","SJAG_05175","SJAG_04295","SJAG_04819","SJAG_01868","SJAG_03052","SJAG_02139","SJAG_02068","SJAG_02518","SJAG_02949","SJAG_02716","SJAG_04790","SJAG_00570","SJAG_00158","SJAG_01407"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85508],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012221"},{"annotations":[85511],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012222"},{"annotations":[86766,86765],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008083"},{"annotations":[85669,85668,85667],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0019149"},{"annotations":[85344],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010155"},{"annotations":[86935],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010526"},{"annotations":[85712,85710,85711,85714,85713],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010027"},{"annotations":[85808,85809],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009737"},{"annotations":[85564,85563],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009290"},{"annotations":[86166],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009744"},{"annotations":[86176],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008767"},{"annotations":[87250],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009756"},{"annotations":[86534],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011871"},{"annotations":[86527],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011873"},{"annotations":[85699,85698,85697,85696,85695],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011449"},{"annotations":[85924,85925,85926],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0019148"}]},"cv_name":"mondo","definition":"A metabolic disorder caused by mutations in proteins critical for lysosomal function, including lysosomal enzymes, lysosomal integral membrane proteins, and proteins involved in the post-translational modification and trafficking of lysosomal proteins.","definition_xrefs":["PMID:21723623"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn errors of metabolism","termid":"MONDO:0019052"}],"gene_count":20,"genes_by_uniquename":{"SJAG_00158":null,"SJAG_00570":null,"SJAG_01407":null,"SJAG_01868":null,"SJAG_02056":null,"SJAG_02068":null,"SJAG_02131":null,"SJAG_02139":null,"SJAG_02518":null,"SJAG_02716":null,"SJAG_02949":null,"SJAG_03052":null,"SJAG_03824":null,"SJAG_04295":null,"SJAG_04323":null,"SJAG_04706":null,"SJAG_04790":null,"SJAG_04819":null,"SJAG_05175":null,"SJAG_05182":null},"genotype_count":0,"in_subsets":["pombe_mondo_slim"],"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"lysosomal storage disease","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["NCIT:C61250","SCTID:28821000119102","SCTID:23585005","UMLS:C0085078","MEDGEN:43098","NANDO:1200055","icd11.foundation:656131403","MESH:D016464","GARD:18884","NANDO:2100165","Orphanet:68366","DOID:3211"],"synonyms":[{"name":"disorder of lysosomal enzyme","type":"exact"},{"name":"disorder of lysosomal enzymes","type":"exact"},{"name":"inborn lysosomal enzyme disorder","type":"exact"},{"name":"lysosomal disease","type":"exact"},{"name":"lysosomal disorder","type":"exact"},{"name":"lysosomal storage disorder","type":"exact"},{"name":"lysosomal storage metabolism disorder","type":"exact"},{"name":"lysosome disease","type":"exact"},{"name":"lysosome disorder","type":"exact"},{"name":"phospholipidosis","type":"related"}],"termid":"MONDO:0002561","terms_by_termid":{"MONDO:0008083":null,"MONDO:0008767":null,"MONDO:0009290":null,"MONDO:0009737":null,"MONDO:0009744":null,"MONDO:0009756":null,"MONDO:0010027":null,"MONDO:0010155":null,"MONDO:0010526":null,"MONDO:0011449":null,"MONDO:0011871":null,"MONDO:0011873":null,"MONDO:0012221":null,"MONDO:0012222":null,"MONDO:0019148":null,"MONDO:0019149":null},"xrefs":{"Monarch":{"xref_id":"0002561"}}}


id: PBO:0036272
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-protein ligase E3 involved in regulation of cytoplasmic translational termination (predicted)","termid":"PBO:0036272"}


id: PBO:0053492
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 470","termid":"PBO:0053492"}


id: PBO:0060969
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear transcription factor Y subunit alpha pseudogene 1","termid":"PBO:0060969"}


id: GO:0070532
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that contains the BRCA1-BARD1 heterodimer, BACH1 and TopBP1, and binds to DNA during S phase at DNA damage sites.","definition_xrefs":["GOC:mah","PMID:16391231"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005575","GO:0005634","GO:0032991"],"is_obsolete":false,"name":"BRCA1-B complex","termid":"GO:0070532"}


id: GO:0051294
data:
  {"annotated_genes":["SJAG_02695","SJAG_02737","SJAG_00594","SJAG_02651","SJAG_00140"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[76694,104891,105223,97307,117335],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000132"}]},"cv_name":"biological_process","definition":"Any process that set the alignment of spindle relative to other cellular structures.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment of spindle localization","termid":"GO:0051293"},{"relation_name":"part_of","term_name":"establishment of cell polarity","termid":"GO:0030010"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00140":null,"SJAG_00594":null,"SJAG_02651":null,"SJAG_02695":null,"SJAG_02737":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0000226"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"part_of","termid":"GO:0007163"}],"interesting_parent_ids":["GO:0007049","GO:0007163","GO:0007010","GO:0051179","GO:0000226","GO:0008150"],"is_obsolete":false,"name":"establishment of spindle orientation","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"orienting of spindle","type":"exact"},{"name":"spindle orientation","type":"exact"}],"termid":"GO:0051294","terms_by_termid":{"GO:0000132":null}}


id: GO:0021712
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which neuroblasts acquire specialized structural and/or functional features that characterize the mature candelabrum cell. Differentiation includes the processes involved in commitment of a neuroblast to a candelabrum cell fate. A candelabrum cell is an inhibitory GABAergic interneuron found in the cerebellar cortex.","definition_xrefs":["PMID:15157725","GO_REF:0000021","GOC:dgh","GOC:dph","GOC:cls","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation in hindbrain","termid":"GO:0021533"},{"relation_name":"is_a","term_name":"central nervous system neuron differentiation","termid":"GO:0021953"},{"relation_name":"part_of","term_name":"cerebellar Purkinje cell layer formation","termid":"GO:0021694"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"candelabrum cell differentiation","termid":"GO:0021712"}


id: MONDO:0018992
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Riedel thyroiditis is a fibroinflammatory disorder of the thyroid gland, occurring more frequently in females, characterized a large, hard thyroid mass, and presenting with pressure symptoms (breathing difficulB,ties and dysphagia) or voice hoarseness and aphonia (impingement of recurrent laryngeal nerve). It can often be associated with extracervical fibroinflammatory disorders such as retroperitoneal fibrosis, primary scleroisng cholangitis and autoimmune diseases such as Hashimoto struma, Addison disease, and Biermer disease.","definition_xrefs":["Orphanet:64744"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autoimmune thyroid disease","termid":"MONDO:0005623"},{"relation_name":"is_a","term_name":"IgG4-related disease","termid":"MONDO:0017287"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"IgG4-related thyroid disease","secondary_identifiers":["GARD:18866","MedDRA:10039142","icd11.foundation:1357889668","MEDGEN:509536","SCTID:89024000","UMLS:C0154162","NCIT:C35827","DOID:14351"],"synonyms":[{"name":"Riedel disease","type":"exact"},{"name":"Riedel fibrosing thyroiditis","type":"exact"},{"name":"Riedel thyroiditis","type":"exact"},{"name":"Riedel's fibrosing thyroiditis","type":"exact"}],"termid":"MONDO:0018992","xrefs":{"Monarch":{"xref_id":"0018992"}}}


id: FYPO:0008189
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which sister kinetochores become separated during the first meiotic nuclear division, and sister chromatids subsequently separate to result in equational segregation, only visible in the absence of chiasmata. Equational sister chromatid separation is caused by bi-orientated attachment of sister chromatids.","direct_ancestors":[{"relation_name":"is_a","term_name":"sister kinetochore dissociation in meiotic metaphase I with  equational sister chromatid  segregation in meiosis I","termid":"FYPO:0005634"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0000641","FYPO:0000631","FYPO:0001985"],"is_obsolete":false,"name":"equational sister chromatid segregation during achiasmatic meiosis I","termid":"FYPO:0008189"}


id: GO:0010923
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate or frequency of phosphatase activity. Phosphatases catalyze the hydrolysis of phosphoric monoesters, releasing inorganic phosphate.","definition_xrefs":["GOC:BHF","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of phosphatase activity","termid":"GO:0010921"},{"relation_name":"is_a","term_name":"negative regulation of dephosphorylation","termid":"GO:0035305"},{"relation_name":"is_a","term_name":"negative regulation of hydrolase activity","termid":"GO:0051346"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of phosphatase activity","termid":"GO:0010923"}


id: PBO:0048224
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"growth arrest and DNA damage inducible alpha pseudogene 1","termid":"PBO:0048224"}


id: PBO:0051303
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 1D-43","termid":"PBO:0051303"}


id: GO:0106162
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a cytidine in mRNA + acetyl-CoA + ATP + H2O = ADP + an N(4)-acetylcytidine in mRNA + CoA + H+ + phosphate.","definition_xrefs":["GOC:sp","RHEA:58480","PMID:30449621"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-acetyltransferase activity","termid":"GO:0008080"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0016746","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"mRNA N-acetyltransferase activity","termid":"GO:0106162"}


id: FYPO:0000461
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cellular process phenotype in which flocculation does not occur.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete flocculation abolished (obsolete FYPO:0000461)","synonyms":[{"name":"absent flocculation","type":"exact"},{"name":"flocculation: absent","type":"related"}],"termid":"FYPO:0000461"}


id: GO:0004203
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete caspase-4 activity (obsolete GO:0004203)","synonyms":[{"name":"caspase-4 activity","type":"exact"}],"termid":"GO:0004203"}


id: GO:0051486
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate by the mevalonate pathway that contributes to terpenoid biosynthesis. This pathway converts acetate, in the form of acetyl-CoA, to isopentenyl diphosphate (IPP) through a series of mevalonate intermediates.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isopentenyl diphosphate biosynthetic process, mevalonate pathway","termid":"GO:0019287"},{"relation_name":"part_of","term_name":"terpenoid biosynthetic process, mevalonate-dependent","termid":"GO:0051485"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0006629","GO:0008150","GO:0006790"],"is_obsolete":false,"name":"isopentenyl diphosphate biosynthetic process, mevalonate pathway involved in terpenoid biosynthetic process","synonyms":[{"name":"isopentenyl diphosphate anabolism, mevalonate pathway, during terpenoid anabolism","type":"related"},{"name":"isopentenyl diphosphate biosynthetic process, mevalonate pathway, during terpenoid biosynthetic process","type":"related"},{"name":"isopentenyl diphosphate formation, mevalonate pathway, during terpenoid biosynthesis","type":"related"},{"name":"isopentenyl diphosphate formation, mevalonate pathway, during terpenoid formation","type":"related"},{"name":"isopentenyl diphosphate synthesis, mevalonate pathway, during terpenoid synthesis","type":"related"}],"termid":"GO:0051486"}


id: PATO:0002522
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer having an elongate structure, similar to a ridge, that extends longitudinally along an anatomical entity.","definition_xrefs":["PATOC:EJS"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keel-shaped","termid":"PATO:0002522"}


id: PBO:0030240
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_H3-K14_acetylation","termid":"PBO:0030240"}


id: PBO:0046013
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 2A","termid":"PBO:0046013"}


id: PBO:0056623
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MED4 antisense RNA 1","termid":"PBO:0056623"}


id: GO:1905364
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of endosomal vesicle fusion.","definition_xrefs":["GOC:PARL","GOC:TermGenie","PMID:26911690","GOC:bc","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of vesicle fusion","termid":"GO:0031338"},{"relation_name":"regulates","term_name":"endosomal vesicle fusion","termid":"GO:0034058"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0061024"},{"rel_name":"regulates","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0006810","GO:0061024","GO:0016192","GO:0008150"],"is_obsolete":false,"name":"regulation of endosomal vesicle fusion","synonyms":[{"name":"regulation of endosome vesicle fusion","type":"exact"}],"termid":"GO:1905364"}


id: PBO:0054670
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2076","termid":"PBO:0054670"}


id: GO:0006200
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete ATP catabolic process (obsolete GO:0006200)","secondary_identifiers":["Wikipedia:ATP_hydrolysis"],"synonyms":[{"name":"ATP breakdown","type":"exact"},{"name":"ATP catabolism","type":"exact"},{"name":"ATP degradation","type":"exact"},{"name":"ATP hydrolysis","type":"narrow"}],"termid":"GO:0006200"}


id: GO:0061367
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in the behaviour of an organism as a result of an acetic acid pain stimulus.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"behavioral response to chemical pain","termid":"GO:0061366"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"behavioral response to acetic acid induced pain","termid":"GO:0061367"}


id: GO:0000779
data:
  {"annotated_genes":["SJAG_02807","SJAG_05321","SJAG_03217","SJAG_03327","SJAG_04699","SJAG_01928","SJAG_01371","SJAG_01211","SJAG_02731","SJAG_01330","SJAG_02346","SJAG_01805","SJAG_03437","SJAG_04745","SJAG_04412","SJAG_01224","SJAG_01831","SJAG_03926","SJAG_03681","SJAG_04884","SJAG_04259","SJAG_03619","SJAG_00918","SJAG_04040","SJAG_04255","SJAG_00646","SJAG_02336","SJAG_03989","SJAG_00307","SJAG_04841","SJAG_01613","SJAG_03418","SJAG_05220","SJAG_04177","SJAG_04076","SJAG_03832","SJAG_04623","SJAG_04126","SJAG_05319","SJAG_01836","SJAG_00794","SJAG_02814","SJAG_04038","SJAG_01082","SJAG_03540","SJAG_01228","SJAG_02624","SJAG_01067","SJAG_00684","SJAG_02651","SJAG_02451","SJAG_00082","SJAG_01601","SJAG_01297","SJAG_02664","SJAG_00207","SJAG_02513","SJAG_03220","SJAG_01837","SJAG_04696","SJAG_05273","SJAG_00666","SJAG_01278","SJAG_02761","SJAG_05019","SJAG_00350","SJAG_00418","SJAG_01546","SJAG_00697","SJAG_00594","SJAG_03683","SJAG_03867","SJAG_03161","SJAG_05266","SJAG_04581","SJAG_03916","SJAG_01775","SJAG_03048"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[88125,90383,91242,91591,99442,102404,108096,108141,108177,117244],"is_not":false,"summary":null,"term":"GO:0000779"},{"annotations":[100855,62677,63771,60788,68658,75300,76810,79941,63838,117302],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0042729"},{"annotations":[117049,116283,112559,114875,113604,110680,99596],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000939"},{"annotations":[91103,119861,105216,73194,75742,89679,104887,112424,79763,115465,70862,95098,119965,113765,97599,100470,73664,79800,105827,102686,97090,119252,104225,80211,90307,112268,76421,99540,108611,109579],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000776"},{"annotations":[101672,114162],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0180019"},{"annotations":[60422,80152,74756,70273],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000444"},{"annotations":[113933,106725,114519,98233,94629,113495,90362,105900,61960,95028,90011],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0031511"},{"annotations":[69433,112057],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0033551"},{"annotations":[77512,76082,75347,76155],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0031262"},{"annotations":[100713,114880,119058],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000940"}]},"cv_name":"cellular_component","definition":"The region of a condensed chromosome that includes the centromere and associated proteins, including the kinetochore. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome.","definition_xrefs":["GOC:elh","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosome, centromeric region","termid":"GO:0000775"},{"relation_name":"part_of","term_name":"condensed chromosome","termid":"GO:0000793"}],"gene_count":78,"genes_by_uniquename":{"SJAG_00082":null,"SJAG_00207":null,"SJAG_00307":null,"SJAG_00350":null,"SJAG_00418":null,"SJAG_00594":null,"SJAG_00646":null,"SJAG_00666":null,"SJAG_00684":null,"SJAG_00697":null,"SJAG_00794":null,"SJAG_00918":null,"SJAG_01067":null,"SJAG_01082":null,"SJAG_01211":null,"SJAG_01224":null,"SJAG_01228":null,"SJAG_01278":null,"SJAG_01297":null,"SJAG_01330":null,"SJAG_01371":null,"SJAG_01546":null,"SJAG_01601":null,"SJAG_01613":null,"SJAG_01775":null,"SJAG_01805":null,"SJAG_01831":null,"SJAG_01836":null,"SJAG_01837":null,"SJAG_01928":null,"SJAG_02336":null,"SJAG_02346":null,"SJAG_02451":null,"SJAG_02513":null,"SJAG_02624":null,"SJAG_02651":null,"SJAG_02664":null,"SJAG_02731":null,"SJAG_02761":null,"SJAG_02807":null,"SJAG_02814":null,"SJAG_03048":null,"SJAG_03161":null,"SJAG_03217":null,"SJAG_03220":null,"SJAG_03327":null,"SJAG_03418":null,"SJAG_03437":null,"SJAG_03540":null,"SJAG_03619":null,"SJAG_03681":null,"SJAG_03683":null,"SJAG_03832":null,"SJAG_03867":null,"SJAG_03916":null,"SJAG_03926":null,"SJAG_03989":null,"SJAG_04038":null,"SJAG_04040":null,"SJAG_04076":null,"SJAG_04126":null,"SJAG_04177":null,"SJAG_04255":null,"SJAG_04259":null,"SJAG_04412":null,"SJAG_04581":null,"SJAG_04623":null,"SJAG_04696":null,"SJAG_04699":null,"SJAG_04745":null,"SJAG_04841":null,"SJAG_04884":null,"SJAG_05019":null,"SJAG_05220":null,"SJAG_05266":null,"SJAG_05273":null,"SJAG_05319":null,"SJAG_05321":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005694","GO:0005575"],"is_obsolete":false,"name":"condensed chromosome, centromeric region","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21802294":null,"PMID:32109380":null},"secondary_identifiers":["GO:0000780"],"synonyms":[{"name":"condensed chromosome, centric region","type":"exact"},{"name":"condensed chromosome, centromere","type":"related"},{"name":"condensed chromosome, pericentric region","type":"related"},{"name":"condensed nuclear chromosome, centromeric region","type":"narrow"}],"termid":"GO:0000779","terms_by_termid":{"GO:0000444":null,"GO:0000776":null,"GO:0000779":null,"GO:0000939":null,"GO:0000940":null,"GO:0031262":null,"GO:0031511":null,"GO:0033551":null,"GO:0042729":null,"GO:0180019":null}}


id: MONDO:0008843
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare, severe, circulatory system disease characterized by premature, diffuse, severe atherosclerosis (including the aorta and renal, coronary, and cerebral arteries), sensorineural deafness, diabetes mellitus, progressive neurological deterioration with cerebellar symptoms and photomyoclonic seizures, and progressive nephropathy. Partial deficiency of mitochondrial complexes III and IV in the kidney and fibroblasts (but not in muscle) may be associated. There have been no further descriptions in the literature since 1994.","definition_xrefs":["Orphanet:1192"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"epilepsy syndrome","termid":"MONDO:0015650"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"atherosclerosis-deafness-diabetes-epilepsy-nephropathy syndrome","secondary_identifiers":["GARD:2279","UMLS:C1859596","MEDGEN:349198","MESH:C565928","OMIM:209010","SCTID:720519003"],"synonyms":[{"name":"Feigenbaum Bergeron Richardson syndrome","type":"related"},{"name":"Feigenbaum-Bergeron-Richardson syndrome","type":"exact"},{"name":"atherosclerosis, premature, with deafness, nephropathy, diabetes mellitus, photomyoclonus, and degenerative neurologic disease","type":"related"},{"name":"premature atherosclerosis with photomyoclonic epilepsy, deafness, diabetes mellitus, nephropathy, and neurodegenerative disorder","type":"related"}],"termid":"MONDO:0008843","xrefs":{"Monarch":{"xref_id":"0008843"}}}


id: PBO:0081266
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 33A","termid":"PBO:0081266"}


id: PBO:0073835
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 7 member 11","termid":"PBO:0073835"}


id: FYPO:0007038
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the mitochondrion is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to mitochondrion","termid":"FYPO:0004336"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"decreased protein localization to mitochondrion","synonyms":[{"name":"decreased protein localisation to mitochondrion","type":"exact"},{"name":"decreased protein localization to mitochondrion during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to mitochondrion during vegetative growth","type":"exact"},{"name":"reduced protein localization to mitochondrion","type":"exact"}],"termid":"FYPO:0007038"}


id: GO:0035020
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of Rac protein signal transduction.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of small GTPase mediated signal transduction","termid":"GO:0051056"},{"relation_name":"regulates","term_name":"Rac protein signal transduction","termid":"GO:0016601"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of Rac protein signal transduction","termid":"GO:0035020"}


id: MONDO:1011926
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system disorder, non-human animal","termid":"MONDO:1011336"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"shivers, non-human animal","secondary_identifiers":["OMIA:000676"],"termid":"MONDO:1011926","xrefs":{"Monarch":{"xref_id":"1011926"}}}


id: PBO:0084365
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Lipid-binding ER protein, enriched at nucleus-vacuolar junctions (NVJ); involved in nonvesicular transfer of ceramides from ER to Golgi; may be involved in sterol metabolism or signaling at the NVJ; contains a synaptotagmin-like-mitochondrial-lipid binding protein (SMP) domain; binds phosphatidylinositols and other lipids in a large-scale study; may interact with ribosomes, based on co-purification experiments","termid":"PBO:0084365"}


id: GO:1990694
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the Golgi medial cisterna membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.","definition_xrefs":["PMID:24119662","GOC:bhm","PMID:16038056"],"gene_count":0,"genotype_count":0,"name":"obsolete intrinsic component of Golgi medial cisterna membrane (obsolete GO:1990694)","synonyms":[{"name":"intrinsic component of medial-Golgi cisterna membrane","type":"exact"}],"termid":"GO:1990694"}


id: MONDO:0032823
data:
  {"annotated_genes":["SJAG_00800"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87337],"is_not":false,"summary":null,"term":"MONDO:0032823"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant non-syndromic intellectual disability","termid":"MONDO:0015802"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00800":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"intellectual developmental disorder 60 with seizures","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5231497","GARD:16367","MEDGEN:1684702","OMIM:618587"],"synonyms":[{"name":"INTELLECTUAL DEVELOPMENTAL DISORDER 60 WITH SEIZURES","type":"related"},{"name":"MRD60","type":"related"},{"name":"Mental Retardation, Autosomal Dominant 60, With Seizures","type":"related"}],"termid":"MONDO:0032823","terms_by_termid":{"MONDO:0032823":null},"xrefs":{"Monarch":{"xref_id":"0032823"}}}


id: GO:0071763
data:
  {"annotated_genes":["SJAG_01467","SJAG_03783","SJAG_02763","SJAG_03449","SJAG_03892","SJAG_04464","SJAG_00840","SJAG_00810","SJAG_04489","SJAG_03891","SJAG_04972","SJAG_01460","SJAG_01050","SJAG_03313","SJAG_01356","SJAG_01906","SJAG_00900","SJAG_03219","SJAG_04319","SJAG_01745","SJAG_01263","SJAG_04883","SJAG_03073","SJAG_00416","SJAG_04509","SJAG_05207","SJAG_03491","SJAG_04271","SJAG_01242","SJAG_00680","SJAG_04578"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92273,103801,106318,108083,110101,119726],"is_not":false,"summary":null,"term":"GO:0071763"},{"annotations":[101780,94166],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140515"},{"annotations":[98684,88212,93386,110694,98017,110282],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0101026"},{"annotations":[110833],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007077"},{"annotations":[119954,119564,119873],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0101024"},{"annotations":[96295,101227,106926,119696,119697,98288,119698,103488,119699,91671],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0007084"},{"annotations":[104004],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140516"},{"annotations":[91672,70977],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071765"},{"annotations":[78977],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0048288"},{"annotations":[72539],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031468"},{"annotations":[94167,104007],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1905557"}]},"cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the nuclear inner or outer membrane.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane organization","termid":"GO:0061024"},{"relation_name":"part_of","term_name":"nuclear envelope organization","termid":"GO:0006998"}],"gene_count":31,"genes_by_uniquename":{"SJAG_00416":null,"SJAG_00680":null,"SJAG_00810":null,"SJAG_00840":null,"SJAG_00900":null,"SJAG_01050":null,"SJAG_01242":null,"SJAG_01263":null,"SJAG_01356":null,"SJAG_01460":null,"SJAG_01467":null,"SJAG_01745":null,"SJAG_01906":null,"SJAG_02763":null,"SJAG_03073":null,"SJAG_03219":null,"SJAG_03313":null,"SJAG_03449":null,"SJAG_03491":null,"SJAG_03783":null,"SJAG_03891":null,"SJAG_03892":null,"SJAG_04271":null,"SJAG_04319":null,"SJAG_04464":null,"SJAG_04489":null,"SJAG_04509":null,"SJAG_04578":null,"SJAG_04883":null,"SJAG_04972":null,"SJAG_05207":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0008150","GO:0061024"],"is_obsolete":false,"name":"nuclear membrane organization","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"PMID:21802294":null,"PMID:24184107":null,"PMID:26774782":null,"PMID:28954740":null,"PMID:32243490":null},"synonyms":[{"name":"nuclear membrane organisation","type":"exact"},{"name":"nuclear membrane organization and biogenesis","type":"related"}],"termid":"GO:0071763","terms_by_termid":{"GO:0007077":null,"GO:0007084":null,"GO:0031468":null,"GO:0048288":null,"GO:0071763":null,"GO:0071765":null,"GO:0101024":null,"GO:0101026":null,"GO:0140515":null,"GO:0140516":null,"GO:1905557":null}}


id: PBO:0031076
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_microcolony_(obsolete_FYPO:0000299)","termid":"PBO:0031076"}


id: GO:1902849
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of neuronal signal transduction.","definition_xrefs":["GOC:sjp","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of signal transduction","termid":"GO:0009967"},{"relation_name":"is_a","term_name":"regulation of neuronal signal transduction","termid":"GO:1902847"},{"relation_name":"positively_regulates","term_name":"neuronal signal transduction","termid":"GO:0023041"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of neuronal signal transduction","synonyms":[{"name":"activation of neuronal signal transduction","type":"narrow"},{"name":"up regulation of neuronal signal transduction","type":"exact"},{"name":"up-regulation of neuronal signal transduction","type":"exact"},{"name":"upregulation of neuronal signal transduction","type":"exact"}],"termid":"GO:1902849"}


id: PBO:0112981
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-phosphoglycerate dehydrogenase and alpha-ketoglutarate reductase; 3PG dehydrogenase that catalyzes the first step in serine and glycine biosynthesis; alpha-ketoglutarate reductase, converting alpha-ketoglutarate to D-2-hydroxyglutarate (D-2HG); directly phosphorylated by TORC1 in a Pib2-dependent manner; localizes to the cytoplasm; ER3 has a paralog, SER33, that arose from the whole genome duplication","termid":"PBO:0112981"}


id: PBO:0052817
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 83","termid":"PBO:0052817"}


id: GO:0061436
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Establishment of the epithelial barrier, the functional barrier in the skin that limits its permeability.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"skin epidermis development","termid":"GO:0098773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"establishment of skin barrier","synonyms":[{"name":"epithelial barrier development","type":"related"},{"name":"establishment of epithelial barrier","type":"broad"},{"name":"skin barrier development","type":"related"}],"termid":"GO:0061436"}


id: MONDO:0019321
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A heterogeneous group of cases that are clinically diagnosed as Werner syndrome (WS) but do not carry WRN gene mutations. Similar to classical WS caused by WRN mutations, patients generally exhibit an aged appearance and common age-related disorders at earlier ages compared to the general population.","definition_xrefs":["Orphanet:79474"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"progeroid syndrome","termid":"MONDO:0015333"},{"relation_name":"is_a","term_name":"laminopathy","termid":"MONDO:0021106"},{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"atypical Werner syndrome","secondary_identifiers":["MEDGEN:894770","SCTID:715633008","icd11.foundation:1661142154","UMLS:C4275075","GARD:11910"],"synonyms":[{"name":"atypical progeroid syndrome","type":"exact"}],"termid":"MONDO:0019321","xrefs":{"Monarch":{"xref_id":"0019321"}}}


id: PBO:0113265
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Phosphoinositide binding protein; required for vesicle formation in cytoplasm-to-vacuole targeting (CVT) pathway, autophagy, micronucleophagy and mitophagy; binds to several phosphoinositides including PtdIns(3,5)P2, PI3P and PI4P; involved in PI3P-dependent recruitment and organization of both Atg12-Atg5-Atg16 complex and Atg8p at pre-autophagosomal structure; necessary for oxidant-induced cell death; targeted to vacuole via AP-3 pathway; WD-40 repeat containing PROPPIN family member","termid":"PBO:0113265"}


id: PBO:0046188
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"engulfment and cell motility 2 pseudogene 1","termid":"PBO:0046188"}


id: GO:0061290
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes that contribute to the progression of the metanephric kidney over time. In this pathway, the activated receptor signals via downstream effectors that result in the inhibition of beta-catenin phosphorylation, thereby preventing degradation of beta-catenin. Stabilized beta-catenin can then accumulate and travel to the nucleus to trigger changes in transcription of target genes.","definition_xrefs":["GOC:mtg_kidney_jan10"],"gene_count":0,"genotype_count":0,"name":"obsolete canonical Wnt signaling pathway involved in metanephric kidney development (obsolete GO:0061290)","synonyms":[{"name":"canonical Wnt receptor signaling pathway involved in metanephric kidney development","type":"exact"},{"name":"canonical Wnt receptor signalling pathway involved in metanephric kidney development","type":"exact"},{"name":"canonical Wnt-activated signaling pathway involved in metanephric kidney development","type":"exact"}],"termid":"GO:0061290"}


id: PBO:0043119
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytosolic iron-sulfur assembly component 3","termid":"PBO:0043119"}


id: GO:0070769
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alphaIIb-beta3 integrin complex bound to CIB, a protein that binds calcium as well as the alphaIIb-beta3 integrin.","definition_xrefs":["PMID:9030514"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005886","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"alphaIIb-beta3 integrin-CIB complex","synonyms":[{"name":"ITGA2B-ITGB3-CIB1 complex","type":"narrow"}],"termid":"GO:0070769"}


id: PBO:0039891
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho GTPase activating protein 45","termid":"PBO:0039891"}


id: SO:0001858
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A promoter element with consensus sequence TTCTTTGTTY, bound an HMG-box transcription factor such as S. pombe Ste11, and found in promoters of genes up-regulated early in meiosis.","definition_xrefs":["PMID:1657709"],"direct_ancestors":[{"relation_name":"is_a","term_name":"promoter_element","termid":"SO:0001659"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TR_box","synonyms":[{"name":"TR box","type":"exact"}],"termid":"SO:0001858"}


id: GO:0034831
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: (R)-1,2,3,4-tetrahydronaphthol = 1,2,3,4-tetrahydronaphthalone + 2 H+ + 2 e-.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete (R)-(-)-1,2,3,4-tetrahydronaphthol dehydrogenase activity (obsolete GO:0034831)","termid":"GO:0034831"}


id: PBO:0055630
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3069","termid":"PBO:0055630"}


id: GO:0002552
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of serotonin by a mast cell or group of mast cells.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"serotonin secretion involved in inflammatory response","termid":"GO:0002442"},{"relation_name":"is_a","term_name":"establishment of localization in cell","termid":"GO:0051649"},{"relation_name":"is_a","term_name":"exocytic process","termid":"GO:0140029"},{"relation_name":"part_of","term_name":"mast cell degranulation","termid":"GO:0043303"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0016192","GO:0006810","GO:0008150","GO:0051179","GO:0023052"],"is_obsolete":false,"name":"serotonin secretion by mast cell","synonyms":[{"name":"serotonin release by mast cell","type":"related"}],"termid":"GO:0002552"}


id: MONDO:0033571
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete skeletal muscle glycogen content and metabolism quantitative trait locus (obsolete MONDO:0033571)","secondary_identifiers":["OMIM:619030"],"synonyms":[{"name":"SKELETAL MUSCLE GLYCOGEN CONTENT AND METABOLISM QUANTITATIVE TRAIT LOCUS","type":"related"},{"name":"SMGMQTL","type":"related"},{"name":"Skeletal muscle glycogen content and metabolism QTL","type":"exact"}],"termid":"MONDO:0033571","xrefs":{"Monarch":{"xref_id":"0033571"}}}


id: GO:0034403
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Recognition of both the 5' and 3'-splice sites and positioning them in the correct alignment with respect to each other so that the second catalytic step of nuclear mRNA splicing can occur.","definition_xrefs":["PMID:9430647","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA 3'-splice site recognition","termid":"GO:0000389"},{"relation_name":"is_a","term_name":"mRNA 5'-splice site recognition","termid":"GO:0000395"},{"relation_name":"part_of","term_name":"generation of catalytic spliceosome for second transesterification step","termid":"GO:0000350"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0016071"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0016071","GO:0065003","GO:0008150","GO:0044085","GO:0010467"],"is_obsolete":false,"name":"alignment of 3' and 5' splice sites of mRNA","synonyms":[{"name":"alignment of 3' and 5' splice sites of nuclear mRNA","type":"exact"}],"termid":"GO:0034403"}


id: PBO:0034533
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cellular_phosphatidylserine_level","termid":"PBO:0034533"}


id: GO:0018971
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving toluene, a volatile monoaromatic hydrocarbon found in crude petroleum and petroleum products, that occur in the absence of oxygen.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"toluene metabolic process","termid":"GO:0018970"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anaerobic toluene metabolic process","secondary_identifiers":["UM-BBD_pathwayID:tol2"],"synonyms":[{"name":"anaerobic toluene metabolism","type":"exact"}],"termid":"GO:0018971"}


id: GO:0170038
data:
  {"annotated_genes":["SJAG_01137","SJAG_01466","SJAG_00234","SJAG_01455","SJAG_03985","SJAG_00396","SJAG_02290","SJAG_01461","SJAG_03457","SJAG_00432","SJAG_02689","SJAG_03152","SJAG_01592","SJAG_03671","SJAG_04652","SJAG_03914","SJAG_00392","SJAG_00502","SJAG_00107","SJAG_02841","SJAG_03562","SJAG_02313","SJAG_04149","SJAG_01346","SJAG_00412","SJAG_04747","SJAG_00695","SJAG_02293","SJAG_00830","SJAG_01574","SJAG_04054","SJAG_04449","SJAG_06635","SJAG_02972","SJAG_03614","SJAG_00120","SJAG_03712","SJAG_03055","SJAG_00660","SJAG_00635","SJAG_00248","SJAG_00592","SJAG_03124","SJAG_03881","SJAG_02388","SJAG_01061","SJAG_00309","SJAG_00881","SJAG_03312","SJAG_00495","SJAG_05007","SJAG_00869","SJAG_04577","SJAG_04042","SJAG_04098","SJAG_02400","SJAG_01404","SJAG_00636","SJAG_03243","SJAG_01019","SJAG_03266","SJAG_01630","SJAG_03775","SJAG_03141","SJAG_04145","SJAG_02832","SJAG_00395","SJAG_04688","SJAG_03306","SJAG_04549","SJAG_03167","SJAG_04425","SJAG_00359","SJAG_01766","SJAG_02791","SJAG_01955","SJAG_04459","SJAG_02505","SJAG_02450"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[106354,68792,65632,111468],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071266"},{"annotations":[78098],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006532"},{"annotations":[71724],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006542"},{"annotations":[72359],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006545"},{"annotations":[72511,73741],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019264"},{"annotations":[111609],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042852"},{"annotations":[78812,110838,118788,70610,98489,102964,112286,106883,111456],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042450"},{"annotations":[111167,102500],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070981"},{"annotations":[118128,59860,111611],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097054"},{"annotations":[80633,76943,71523,76187,60037,57898,78774,64511],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000105"},{"annotations":[113637,108685,104119,110806,91010,103636,111473],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1901705"},{"annotations":[80276,103637,113638,77290,91011,59378,75182],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009098"},{"annotations":[101009],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019280"},{"annotations":[78207,78657,80442,79562,58782,77258],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019509"},{"annotations":[98854],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019284"},{"annotations":[98674,78258],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009094"},{"annotations":[64707,91210,78248,67573],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0055129"},{"annotations":[61107,80029,117298],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006564"},{"annotations":[74593,79565,73651,77545],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000162"},{"annotations":[80277,76450,64080,58709,77340],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009099"},{"annotations":[65113,113833,76439,64467,70544,77012,77814,96694,75414],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019878"},{"annotations":[79378,71441,112349,72250,74901],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009086"},{"annotations":[112350,77353,106356,64674,70110],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009088"},{"annotations":[79111,77014],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006571"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of any amino acid that is incorporated into protein naturally by ribosomal translation of mRNA, and that has a specific codon for translation from mRNA to protein.","definition_xrefs":["GOC:ew"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic acid biosynthetic process","termid":"GO:0046394"},{"relation_name":"is_a","term_name":"proteinogenic amino acid metabolic 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amino acid biosynthetic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null,"GO_REF:0000108":null,"GO_REF:0000117":null},"synonyms":[{"name":"proteinogenic amino acid anabolism","type":"exact"},{"name":"proteinogenic amino acid biosynthesis","type":"exact"},{"name":"proteinogenic amino acid formation","type":"exact"},{"name":"proteinogenic amino acid synthesis","type":"exact"}],"termid":"GO:0170038","terms_by_termid":{"GO:0000105":null,"GO:0000162":null,"GO:0006532":null,"GO:0006542":null,"GO:0006545":null,"GO:0006564":null,"GO:0006571":null,"GO:0009086":null,"GO:0009088":null,"GO:0009094":null,"GO:0009098":null,"GO:0009099":null,"GO:0019264":null,"GO:0019280":null,"GO:0019284":null,"GO:0019509":null,"GO:0019878":null,"GO:0042450":null,"GO:0042852":null,"GO:0055129":null,"GO:0070981":null,"GO:0071266":null,"GO:0097054":null,"GO:1901705":null}}


id: PBO:0070297
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY1 pseudogene 3","termid":"PBO:0070297"}


id: MONDO:0022746
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"partial duplication of chromosome 13","termid":"MONDO:0700029"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 13p duplication","secondary_identifiers":["MEDGEN:419282","UMLS:C2930906","MESH:C535450"],"synonyms":[{"name":"Duplication 13p","type":"related"},{"name":"chromosome 13p, trisomy","type":"related"},{"name":"trisomy 13p","type":"related"}],"termid":"MONDO:0022746","xrefs":{"Monarch":{"xref_id":"0022746"}}}


id: PBO:0003075
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptionally regulated by Gpa2","termid":"PBO:0003075"}


id: GO:0030174
data:
  {"annotated_genes":["SJAG_03438","SJAG_02162","SJAG_03720","SJAG_03048","SJAG_03695","SJAG_02074","SJAG_03160","SJAG_01210","SJAG_00364"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[102709,98104,109262],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903467"},{"annotations":[117670,103665,112417],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903468"},{"annotations":[89384,106985,116621,102715],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904514"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of initiation of DNA-dependent DNA replication; the process in which DNA becomes competent to replicate. In eukaryotes, replication competence is established in early G1 and lost during the ensuing S phase.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of DNA-templated DNA replication","termid":"GO:0090329"},{"relation_name":"regulates","term_name":"DNA replication initiation","termid":"GO:0006270"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00364":null,"SJAG_01210":null,"SJAG_02074":null,"SJAG_02162":null,"SJAG_03048":null,"SJAG_03160":null,"SJAG_03438":null,"SJAG_03695":null,"SJAG_03720":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006260"},{"rel_name":"regulates","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006260","GO:0006259","GO:0008150"],"is_obsolete":false,"name":"regulation of DNA-templated DNA replication initiation","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"DNA replication licencing","type":"exact"},{"name":"DNA replication licensing","type":"exact"},{"name":"regulation of DNA replication initiation","type":"broad"},{"name":"regulation of DNA-dependent DNA replication initiation","type":"exact"}],"termid":"GO:0030174","terms_by_termid":{"GO:1903467":null,"GO:1903468":null,"GO:1904514":null}}


id: GO:2000450
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of CD8-positive, alpha-beta T cell extravasation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of T cell extravasation","termid":"GO:2000408"},{"relation_name":"is_a","term_name":"regulation of CD8-positive, alpha-beta T cell extravasation","termid":"GO:2000449"},{"relation_name":"negatively_regulates","term_name":"CD8-positive, alpha-beta T cell extravasation","termid":"GO:0035697"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of CD8-positive, alpha-beta T cell extravasation","termid":"GO:2000450"}


id: PBO:0002500
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"post transcriptional regulation of Tsn1 expression","termid":"PBO:0002500"}


id: PBO:0045526
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DTWD1 pseudogene 2","termid":"PBO:0045526"}


id: PBO:0083277
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; not conserved in closely related Saccharomyces species; deletion mutation enhances replication of Brome mosaic virus in S. cerevisiae, but this is likely due to effects on the overlapping gene ELP4","termid":"PBO:0083277"}


id: PBO:0085014
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Neutral trehalase, degrades trehalose; required for thermotolerance and may mediate resistance to other cellular stresses; phosphorylated and activated by Cdc28p at the G1/S phase transition to coordinately regulate carbohydrate metabolism and the cell cycle; inhibited by Dcs1p; NTH1 has a paralog, NTH2, that arose from the whole genome duplication","termid":"PBO:0085014"}


id: MONDO:0018790
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete COL4A1 or COL4A2-related cerebral small vessel disease with hemorrhagic tendency (obsolete MONDO:0018790)","secondary_identifiers":["Orphanet:477765"],"synonyms":[{"name":"COL4A1 or COL4A2-related cerebral angiopathy with hemorrhagic tendency","type":"exact"}],"termid":"MONDO:0018790","xrefs":{"Monarch":{"xref_id":"0018790"}}}


id: GO:0031812
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a P2Y1 nucleotide receptor.","definition_xrefs":["GOC:nln","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled nucleotide receptor binding","termid":"GO:0031811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"P2Y1 nucleotide receptor binding","synonyms":[{"name":"P2Y1 nucleotide receptor ligand","type":"narrow"}],"termid":"GO:0031812"}


id: GO:0019678
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving propionate that occur in the methylmalonyl pathway.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"propionate metabolic process","termid":"GO:0019541"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"propionate metabolic process, methylmalonyl pathway","secondary_identifiers":["MetaCyc:PROPIONMET-PWY"],"synonyms":[{"name":"propionate metabolism, methylmalonyl pathway","type":"exact"}],"termid":"GO:0019678"}


id: GO:0007236
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete activation of Ssk1 protein (obsolete GO:0007236)","synonyms":[{"name":"activation of Ssk1 protein","type":"exact"}],"termid":"GO:0007236"}


id: GO:0036014
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The region between the inner and outer lipid bilayers of the cyanelle envelope; includes the peptidoglycan layer.","definition_xrefs":["GOC:aa"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plastid intermembrane space","termid":"GO:0009529"},{"relation_name":"part_of","term_name":"cyanelle envelope","termid":"GO:0033112"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"cyanelle intermembrane space","synonyms":[{"name":"cyanelle envelope lumen","type":"exact"},{"name":"cyanelle periplasm","type":"exact"}],"termid":"GO:0036014"}


id: GO:0050464
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: nitrite + NADP+ + H2O = nitrate + NADPH + H+.","definition_xrefs":["RHEA:19061"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nitrate reductase [NAD(P)H] activity","termid":"GO:0050463"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"nitrate reductase (NADPH) activity","secondary_identifiers":["MetaCyc:NITRATE-REDUCTASE-NADPH-RXN","EC:1.7.1.3"],"synonyms":[{"name":"NADPH-nitrate reductase activity","type":"related"},{"name":"NADPH:nitrate oxidoreductase activity","type":"related"},{"name":"NADPH:nitrate reductase activity","type":"related"},{"name":"assimilatory NADPH-nitrate reductase activity","type":"related"},{"name":"assimilatory nitrate reductase activity","type":"broad"},{"name":"assimilatory reduced nicotinamide adenine dinucleotide phosphate-nitrate reductase activity","type":"related"},{"name":"nitrate reductase (NADPH(2)) activity","type":"related"},{"name":"nitrate reductase (NADPH2)","type":"related"},{"name":"nitrite:NADP+ oxidoreductase activity","type":"related"},{"name":"triphosphopyridine nucleotide-nitrate reductase activity","type":"related"}],"termid":"GO:0050464"}


id: PBO:0041478
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 11 open reading frame 71","termid":"PBO:0041478"}


id: PBO:0052945
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratinocyte associated protein 2","termid":"PBO:0052945"}


id: MONDO:0012440
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"migraine with or without aura, susceptibility to","termid":"MONDO:0100246"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"migraine with or without aura, susceptibility to, 10","secondary_identifiers":["MEDGEN:341839","UMLS:C1857752","OMIM:610208"],"synonyms":[{"name":"Mgr10","type":"related"},{"name":"migraine with or without aura, susceptibility to, 10","type":"exact"},{"name":"migraine with or without aura, susceptibility to, type 10","type":"exact"},{"name":"migraine with pulsation","type":"related"}],"termid":"MONDO:0012440","xrefs":{"Monarch":{"xref_id":"0012440"}}}


id: PBO:0089201
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"human REX1BD ortholog, implicated in DNA repair","termid":"PBO:0089201"}


id: FYPO:0005339
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the nucleus is increased during a cellular response to hydroxyurea.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein localization to nucleus during vegetative growth","termid":"FYPO:0001130"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000138","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"increased protein localization to nucleus during cellular response to hydroxyurea","synonyms":[{"name":"increased protein localisation to nucleus during cellular response to hydroxyurea","type":"exact"},{"name":"increased protein localization to nucleus during cellular response to HU","type":"exact"},{"name":"increased protein localization to nucleus during cellular response to hydroxyurea during mitotic cell cycle","type":"related"},{"name":"increased protein localization to nucleus during cellular response to hydroxyurea during vegetative growth","type":"exact"}],"termid":"FYPO:0005339"}


id: PBO:0080487
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"von Willebrand factor A domain containing 5B2","termid":"PBO:0080487"}


id: PBO:0080393
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VPS26A pseudogene 1","termid":"PBO:0080393"}


id: PBO:0058965
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"makorin ring finger protein 8, pseudogene","termid":"PBO:0058965"}


id: SO:0002021
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A DNA motif that is found in eukaryotic rDNA repeats, and is a site of replication fork pausing.","definition_xrefs":["PMID:17614787"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA_motif","termid":"SO:0000713"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mating_type_region_replication_fork_barrier","synonyms":[{"name":"mating type region replication fork barrier","type":"exact"}],"termid":"SO:0002021"}


id: GO:0031784
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a melatonin receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor binding","termid":"GO:0001664"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"melatonin receptor binding","synonyms":[{"name":"melatonin receptor ligand","type":"narrow"}],"termid":"GO:0031784"}


id: PBO:0032756
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved fungal protein Aim19","termid":"PBO:0032756"}


id: PBO:0083446
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified gene ATP14","termid":"PBO:0083446"}


id: GO:1901855
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of 5,6,7,8-tetrahydrosarcinapterin.","definition_xrefs":["GOC:TermGenie","GOC:yaf","UniPathway:UPA00069"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tricarboxylic acid biosynthetic process","termid":"GO:0072351"},{"relation_name":"is_a","term_name":"5,6,7,8-tetrahydrosarcinapterin metabolic process","termid":"GO:1901853"},{"relation_name":"is_a","term_name":"tetrahydromethanopterin biosynthetic process","termid":"GO:2001118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0042559"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0042559"],"is_obsolete":false,"name":"5,6,7,8-tetrahydrosarcinapterin biosynthetic process","synonyms":[{"name":"5,6,7,8-tetrahydrosarcinapterin anabolism","type":"exact"},{"name":"5,6,7,8-tetrahydrosarcinapterin biosynthesis","type":"exact"},{"name":"5,6,7,8-tetrahydrosarcinapterin formation","type":"exact"},{"name":"5,6,7,8-tetrahydrosarcinapterin synthesis","type":"exact"}],"termid":"GO:1901855"}


id: MONDO:0018562
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete hereditary otorhinolaryngological malformation (obsolete MONDO:0018562)","secondary_identifiers":["Orphanet:435603"],"synonyms":[{"name":"genetic otorhinolaryngological malformation","type":"exact"}],"termid":"MONDO:0018562","xrefs":{"Monarch":{"xref_id":"0018562"}}}


id: PR:O74990
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A conserved oligomeric Golgi complex subunit 4 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO04646"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved oligomeric Golgi complex subunit 4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC338.13","secondary_identifiers":["UniProtKB:O74990"],"synonyms":[{"name":"COG complex subunit 4 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-COG4","type":"exact"},{"name":"component of oligomeric Golgi complex 4 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74990"}


id: GO:0043955
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-hydroxypropionate + ATP + CoA = 3-hydroxypropionyl-CoA + AMP + diphosphate.","definition_xrefs":["GOC:jl","PMID:11821399"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CoA-ligase activity","termid":"GO:0016405"},{"relation_name":"is_a","term_name":"acid-thiol ligase activity","termid":"GO:0016878"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016874","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"3-hydroxypropionyl-CoA synthetase activity","secondary_identifiers":["RHEA:26534","EC:6.2.1.36"],"synonyms":[{"name":"3-hydroxy propionyl-CoA synthetase activity","type":"exact"},{"name":"AMP-dependent synthetase and ligase","type":"broad"},{"name":"AMP-dependent synthetase and ligase:Enoyl-CoA hydratase/isomerase","type":"broad"},{"name":"acetyl-coenzyme A synthetase","type":"broad"},{"name":"acetyl-coenzyme A synthetase/GroES-like domain","type":"narrow"},{"name":"enoyl-CoA hydratase/isomerase","type":"broad"}],"termid":"GO:0043955"}


id: GO:0110131
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A complex that localizes to actin cortical patches at sites of endocytosis and negatively regulates barbed end F-actin assembly, resulting in the generation of free actin pools. The Aim21-Tda2 complex is necessary for efficient endocytosis and balancing the distribution of actin between patches and cables.","definition_xrefs":["PMID:28706108","PMID:29467252","GOC:rn"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"actin cortical patch","termid":"GO:0030479"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0030479"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0015629"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005938"}],"interesting_parent_ids":["GO:0005575","GO:0030479","GO:0005938","GO:0032991","GO:0015629","GO:0005737"],"is_obsolete":false,"name":"Aim21-Tda2 complex","synonyms":[{"name":"Aim21/Tda2 complex","type":"exact"}],"termid":"GO:0110131"}


id: MOD:00457
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with a succinyl group.","definition_xrefs":["PubMed:12175151","PubMed:11857757","Unimod:64#N-term"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"},{"relation_name":"is_a","term_name":"succinylated residue","termid":"MOD:01029"},{"relation_name":"is_a","term_name":"alpha-amino acylated residue","termid":"MOD:01696"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-amino succinylated residue","synonyms":[{"name":"Succinic anhydride labeling reagent light form (N-term)","type":"related"},{"name":"Succinyl","type":"related"}],"termid":"MOD:00457"}


id: PBO:0085919
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; member of the seripauperin multigene family encoded mainly in subtelomeric regions; expression is induced after ethanol shock; SWAT-GFP and mCherry fusion proteins localize to the endoplasmic reticulum and vacuole respectively","termid":"PBO:0085919"}


id: GO:0099518
data:
  {"annotated_genes":["SJAG_03011","SJAG_00594","SJAG_02651"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[116571],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030050"},{"annotations":[104894,105228],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0047496"}]},"cv_name":"biological_process","definition":"The directed movement of a vesicle along a cytoskeletal fiber such as a microtubule or and actin filament, mediated by motor proteins.","definition_xrefs":["GOC:ecd","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoskeleton-dependent intracellular transport","termid":"GO:0030705"},{"relation_name":"is_a","term_name":"establishment of vesicle localization","termid":"GO:0051650"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00594":null,"SJAG_02651":null,"SJAG_03011":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"vesicle cytoskeletal trafficking","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"cytoskeletal fiber-based vesicle localization","type":"exact"},{"name":"vesicle cytoskeletal transport","type":"exact"}],"termid":"GO:0099518","terms_by_termid":{"GO:0030050":null,"GO:0047496":null}}


id: MONDO:0859345
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete branchial arch abnormalities, choanal atresia, athelia, hearing loss, and hypothyroidism syndrome (obsolete MONDO:0859345)","termid":"MONDO:0859345","xrefs":{"Monarch":{"xref_id":"0859345"}}}


id: MONDO:1012113
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"primary hypoadrenocorticism, non-human animal","termid":"MONDO:1011676"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"primary hypoadrenocorticism, dog","secondary_identifiers":["OMIA:000520-9615"],"termid":"MONDO:1012113","xrefs":{"Monarch":{"xref_id":"1012113"}}}


id: SO:0002085
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant whereby two genes, on the same strand have become joined.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gene_fusion","termid":"SO:0001565"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unidirectional_gene_fusion","synonyms":[{"name":"unidirectional gene fusion","type":"exact"}],"termid":"SO:0002085"}


id: PBO:0050548
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HPS6 biogenesis of lysosomal organelles complex 2 subunit 3","termid":"PBO:0050548"}


id: GO:0047234
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 raffinose = sucrose + 1F-alpha-D-galactosylraffinose.","definition_xrefs":["EC:2.4.1.166"],"direct_ancestors":[{"relation_name":"is_a","term_name":"galactosyltransferase activity","termid":"GO:0008378"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0016757"],"is_obsolete":false,"name":"raffinose-raffinose alpha-galactotransferase activity","secondary_identifiers":["MetaCyc:RXN-11490","RHEA:14125"],"synonyms":[{"name":"raffinose (raffinose donor) galactosyltransferase activity","type":"related"},{"name":"raffinose-raffinose a-galactosyltransferase activity","type":"exact"},{"name":"raffinose-raffinose alpha-galactosyltransferase activity","type":"exact"},{"name":"raffinose:raffinose alpha-D-galactosyltransferase activity","type":"related"},{"name":"raffinose:raffinose alpha-galactosyltransferase activity","type":"related"}],"termid":"GO:0047234"}


id: MONDO:0019423
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"X-linked intellectual disability, Stoll type is characterized by intellectual deficit, short stature and characteristic facies (hypertelorism, prominent forehead, frontal bossing, a broad nasal tip and anteverted nares). It has been described in four males from three generations of the same family. Two females from this family also displayed intellectual deficit and the characteristic facies. Transmission is X-linked.","definition_xrefs":["Orphanet:85326"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital nervous system disorder","termid":"MONDO:0002320"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"},{"relation_name":"is_a","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"X-linked intellectual disability, Stoll type","secondary_identifiers":["MEDGEN:930744","SCTID:718911005","GARD:19059","UMLS:C4305075"],"termid":"MONDO:0019423","xrefs":{"Monarch":{"xref_id":"0019423"}}}


id: GO:0034657
data:
  {"annotated_genes":["SJAG_03385","SJAG_02197","SJAG_01637","SJAG_01886","SJAG_01678","SJAG_01472","SJAG_04309"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[71253,77715,79343,80327,80691,88612,114636],"is_not":false,"summary":null,"term":"GO:0034657"}]},"cv_name":"cellular_component","definition":"A protein complex with ubiquitin ligase activity that, in Saccharomyces cerevisiae, is involved in proteasomal degradation of fructose-1,6-bisphosphatase (FBPase) and phosphoenolpyruvate carboxykinase during the transition from gluconeogenic to glycolytic growth conditions. It appears to play a broader role in cellular homeostasis and development in other species.","definition_xrefs":["PMID:35682545","PMID:12686616","PMID:18508925"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ubiquitin ligase complex","termid":"GO:0000151"}],"gene_count":7,"genes_by_uniquename":{"SJAG_01472":null,"SJAG_01637":null,"SJAG_01678":null,"SJAG_01886":null,"SJAG_02197":null,"SJAG_03385":null,"SJAG_04309":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"GID complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"C-terminal to LisH complex","type":"exact"},{"name":"CTLH complex","type":"exact"}],"termid":"GO:0034657","terms_by_termid":{"GO:0034657":null}}


id: PBO:0110459
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER membrane O-mannosyltransferase Ogm4","termid":"PBO:0110459"}


id: GO:0050784
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of cocaine, an alkaloid obtained from the dried leaves of the shrub Erythroxylon coca. It is a cerebral stimulant and narcotic.","definition_xrefs":["PMID:17132243"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alkaloid catabolic process","termid":"GO:0009822"},{"relation_name":"is_a","term_name":"cocaine metabolic process","termid":"GO:0050783"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cocaine catabolic process","synonyms":[{"name":"cocaine breakdown","type":"exact"},{"name":"cocaine catabolism","type":"exact"},{"name":"cocaine degradation","type":"exact"}],"termid":"GO:0050784"}


id: PBO:0066200
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein 17 pseudogene 1","termid":"PBO:0066200"}


id: MONDO:0016636
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete thrombotic disorder due to a constitutional platelet anomaly (obsolete MONDO:0016636)","secondary_identifiers":["Orphanet:248401"],"termid":"MONDO:0016636","xrefs":{"Monarch":{"xref_id":"0016636"}}}


id: PBO:0063298
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protocadherin gamma subfamily C, 5","termid":"PBO:0063298"}


id: FYPO:0005816
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which microtubule-based movement is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular process during vegetative growth","termid":"FYPO:0001319"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000257","FYPO:0001312"],"is_obsolete":false,"name":"normal microtubule-based movement","synonyms":[{"name":"normal microtubule-based movement during mitotic cell cycle","type":"related"},{"name":"normal microtubule-based movement during vegetative growth","type":"exact"}],"termid":"FYPO:0005816"}


id: GO:0060960
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the developmental fate of a cell becomes restricted such that it will develop into a neuron of the heart.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuron fate commitment","termid":"GO:0048663"},{"relation_name":"is_a","term_name":"cardiac cell fate commitment","termid":"GO:0060911"},{"relation_name":"part_of","term_name":"cardiac neuron differentiation","termid":"GO:0060945"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac neuron fate commitment","synonyms":[{"name":"heart neuron fate commitment","type":"exact"}],"termid":"GO:0060960"}


id: PBO:0041822
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carnosine synthase 1","termid":"PBO:0041822"}


id: PBO:0003931
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cdc48-Npl4-Ufd1 complex component Npl4 (predicted)","termid":"PBO:0003931"}


id: PATO:0001128
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001128 absolute work value (obsolete PATO:0001128)","termid":"PATO:0001128"}


id: PBO:0064934
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PPT2-EGFL8 readthrough (NMD candidate)","termid":"PBO:0064934"}


id: PBO:0033831
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centractin family actin-like protein Arp1","termid":"PBO:0033831"}


id: PBO:0085182
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"One of three alternate beta-subunits of the Snf1 kinase complex; allows nuclear localization of the Snf1 kinase complex in the presence of a nonfermentable carbon source; necessary and sufficient for phosphorylation of the Mig2p transcription factor in response to alkaline stress; functionally redundant with SIP1 and SIP2 for the phosphorylation of Mig1p in response to glucose deprivation; contains a glycogen-binding domain","termid":"PBO:0085182"}


id: PBO:0077820
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TP53RK divergent transcript","termid":"PBO:0077820"}


id: MONDO:0014641
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An amyotrophic lateral sclerosis that has material basis in mutation in the TBK1 gene on chromosome 12q14.","definition_xrefs":["DOID:0110069","PMID:25700176"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial amyotrophic lateral sclerosis","termid":"MONDO:0005144"},{"relation_name":"is_a","term_name":"frontotemporal dementia with motor neuron disease","termid":"MONDO:0017161"},{"relation_name":"is_a","term_name":"frontotemporal dementia and/or amyotrophic lateral sclerosis","termid":"MONDO:0030923"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0002039"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0002039"],"is_obsolete":false,"name":"frontotemporal dementia and/or amyotrophic lateral sclerosis 4","secondary_identifiers":["UMLS:C4225325","GARD:18398","MEDGEN:902979","OMIM:616439"],"synonyms":[{"name":"FTDALS4","type":"exact"},{"name":"frontotemporal dementia and/or amyotrophic lateral sclerosis 4","type":"exact"},{"name":"frontotemporal dementia and/or amyotrophic lateral sclerosis type 4","type":"exact"}],"termid":"MONDO:0014641","xrefs":{"Monarch":{"xref_id":"0014641"}}}


id: MONDO:0006966
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A condition with a clinical picture similar to that of Parkinson disease, but which is caused by external factors, including medication.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neurodegenerative disease","termid":"MONDO:0005559"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"secondary Parkinson disease","secondary_identifiers":["MESH:D010302","MEDGEN:10592","EFO:1001175","NCIT:C34899","DOID:13548","SCTID:265377002","UMLS:C0030569","ICD9:332.1"],"synonyms":[{"name":"disorder presenting primarily with parkinsonism","type":"exact"},{"name":"secondary Parkinsonism","type":"exact"},{"name":"secondary parkinsonism (disorder) [ambiguous]","type":"exact"},{"name":"secondary parkinsonism, unspecified","type":"exact"},{"name":"symptomatic parkinsonism","type":"exact"}],"termid":"MONDO:0006966","xrefs":{"Monarch":{"xref_id":"0006966"}}}


id: GO:0009189
data:
  {"annotated_genes":["SJAG_00885","SJAG_04665","SJAG_04657","SJAG_02874"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[107618,92767,95822],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006240"},{"annotations":[71399],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006233"},{"annotations":[71398],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006227"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a deoxyribonucleoside diphosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with diphosphate on the sugar.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside diphosphate biosynthetic process","termid":"GO:0009133"},{"relation_name":"is_a","term_name":"deoxyribonucleoside diphosphate metabolic process","termid":"GO:0009186"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00885":null,"SJAG_02874":null,"SJAG_04657":null,"SJAG_04665":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"deoxyribonucleoside diphosphate biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"deoxyribonucleoside diphosphate anabolism","type":"exact"},{"name":"deoxyribonucleoside diphosphate biosynthesis","type":"exact"},{"name":"deoxyribonucleoside diphosphate formation","type":"exact"},{"name":"deoxyribonucleoside diphosphate synthesis","type":"exact"}],"termid":"GO:0009189","terms_by_termid":{"GO:0006227":null,"GO:0006233":null,"GO:0006240":null}}


id: PBO:0067626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 798, pseudogene","termid":"PBO:0067626"}


id: GO:0052460
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which an organism modulates the frequency, rate or extent of the release of nutrients from a symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host-mediated perturbation of symbiont process","termid":"GO:0051851"},{"relation_name":"part_of","term_name":"acquisition of nutrients from symbiont","termid":"GO:0051850"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"modulation of nutrient release by symbiont","synonyms":[{"name":"modulation by host of nutrient release from symbiont","type":"exact"}],"termid":"GO:0052460"}


id: GO:1990012
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A cytoplasmic inclusion body found in some lateral geniculate neurons and composed of sheets of tubules (25 nm in diameter) separated by dense material (about 75 nm wide), which together with the tubules whorl give a structure resembling a fingerprint.","definition_xrefs":["NIF_Subcellular:nlx_151681"],"direct_ancestors":[{"relation_name":"is_a","term_name":"laminated body","termid":"GO:1990011"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"complex laminated body","synonyms":[{"name":"CLB","type":"related"}],"termid":"GO:1990012"}


id: PBO:0001319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RecA family","termid":"PBO:0001319"}


id: PBO:0087964
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transporter of the ATP-binding cassette (ABC) family; involved in bile acid transport; negative regulator of vacuole fusion; regulates release of lumenal Ca2+ stores; similar to mammalian bile transporters; YBT1 has a paralog, VMR1, that arose from the whole genome duplication","termid":"PBO:0087964"}


id: GO:0010563
data:
  {"annotated_genes":["SJAG_04422","SJAG_03170","SJAG_00053","SJAG_03940","SJAG_05314","SJAG_01187","SJAG_01906","SJAG_00685","SJAG_02380"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104722,90736],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902647"},{"annotations":[76373,73415],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045820"},{"annotations":[111749,115870],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001211"},{"annotations":[118401],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905707"},{"annotations":[113131,110100],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071072"}]},"cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of metabolic process","termid":"GO:0009892"},{"relation_name":"is_a","term_name":"regulation of phosphorus metabolic process","termid":"GO:0051174"},{"relation_name":"negatively_regulates","term_name":"phosphorus metabolic process","termid":"GO:0006793"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00053":null,"SJAG_00685":null,"SJAG_01187":null,"SJAG_01906":null,"SJAG_02380":null,"SJAG_03170":null,"SJAG_03940":null,"SJAG_04422":null,"SJAG_05314":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of phosphorus metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0010563","terms_by_termid":{"GO:0045820":null,"GO:0071072":null,"GO:1902647":null,"GO:1905707":null,"GO:2001211":null}}


id: GO:0007402
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell fate determination process in which a cell becomes capable of differentiating autonomously into a ganglion mother cell regardless of its environment; upon determination, the cell fate cannot be reversed.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell fate determination","termid":"GO:0001709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ganglion mother cell fate determination","termid":"GO:0007402"}


id: PBO:0062586
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 10 subfamily H member 1","termid":"PBO:0062586"}


id: MONDO:0021104
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Lipid infiltration of the hepatic parenchymal cells that is due to alcohol abuse. The fatty changes in the alcoholic fatty liver may be reversible, depending on the amounts of triglycerides accumulated.","definition_xrefs":["MESH:D005235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty liver disease","termid":"MONDO:0004790"},{"relation_name":"is_a","term_name":"alcoholic liver diseases","termid":"MONDO:0043693"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0002515","MONDO:0004335"],"is_obsolete":false,"name":"alcoholic fatty liver disease","secondary_identifiers":["MEDGEN:4666","ICD9:571.0","UMLS:C0015696","SCTID:50325005"],"synonyms":[{"name":"alcoholic Steatohepatitis","type":"exact"},{"name":"alcoholic fatty liver","type":"exact"}],"termid":"MONDO:0021104","xrefs":{"Monarch":{"xref_id":"0021104"}}}


id: GO:0050045
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-beta-D-glucosyl-D-glucose + phosphate = D-glucose + alpha-D-glucose 1-phosphate.","definition_xrefs":["EC:2.4.1.31"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016757","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"laminaribiose phosphorylase activity","secondary_identifiers":["RHEA:16617","MetaCyc:LAMINARIBIOSE-PHOSPHORYLASE-RXN"],"synonyms":[{"name":"3-beta-D-glucosyl-D-glucose:phosphate alpha-D-glucosyltransferase activity","type":"related"}],"termid":"GO:0050045"}


id: GO:0071421
data:
  {"annotated_genes":["SJAG_04867","SJAG_04096","SJAG_01007","SJAG_03850"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[61575,64368,71195,109034],"is_not":false,"summary":null,"term":"GO:0071421"}]},"cv_name":"biological_process","definition":"A process in which a manganese ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"manganese ion transport","termid":"GO:0006828"},{"relation_name":"is_a","term_name":"monoatomic cation transmembrane transport","termid":"GO:0098655"},{"relation_name":"is_a","term_name":"inorganic cation transmembrane transport","termid":"GO:0098662"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01007":null,"SJAG_03850":null,"SJAG_04096":null,"SJAG_04867":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"manganese ion transmembrane transport","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"manganese ion membrane transport","type":"exact"},{"name":"transmembrane manganese transport","type":"exact"}],"termid":"GO:0071421","terms_by_termid":{"GO:0071421":null}}


id: PBO:0065557
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PTGES2 antisense RNA 1 (head to head)","termid":"PBO:0065557"}


id: PBO:0091199
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Lys","termid":"PBO:0091199"}


id: GO:0140500
data:
  {"annotated_genes":["SJAG_04435"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89847],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140501"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of reticulophagy.","definition_xrefs":["PMID:32735772"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of macroautophagy","termid":"GO:0016241"},{"relation_name":"regulates","term_name":"reticulophagy","termid":"GO:0061709"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04435":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006914"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006914","GO:0008150"],"is_obsolete":false,"name":"regulation of reticulophagy","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"regulation of ER autophagy","type":"exact"},{"name":"regulation of ER degradation","type":"related"},{"name":"regulation of ER-phagy","type":"exact"},{"name":"regulation of autophagy of the ER","type":"exact"},{"name":"regulation of autophagy of the endoplasmic reticulum","type":"exact"},{"name":"regulation of endoplasmic reticulum autophagy","type":"exact"},{"name":"regulation of endoplasmic reticulum degradation","type":"related"}],"termid":"GO:0140500","terms_by_termid":{"GO:0140501":null}}


id: PBO:0027751
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_localization_to_nucleus","termid":"PBO:0027751"}


id: PR:Q09724
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mrp11 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09724"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"54S ribosomal protein L11, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC31A2.03","synonyms":[{"name":"Spom972h-mrp11","type":"exact"}],"termid":"PR:Q09724"}


id: PBO:0040783
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Beta cell long intergenic noncoding RNA 1","termid":"PBO:0040783"}


id: PBO:0002730
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutaredoxin Grx1","termid":"PBO:0002730"}


id: MONDO:0021644
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"esophageal varices","termid":"MONDO:0001221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"esophageal varices without bleeding","secondary_identifiers":["UMLS:C0267092","ICD10CM:I85.00","ICD9:456.1","MEDGEN:540382","SCTID:14223005"],"synonyms":[{"name":"esophageal varices without bleeding","type":"exact"}],"termid":"MONDO:0021644","xrefs":{"Monarch":{"xref_id":"0021644"}}}


id: FYPO:0006258
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate, or speed, of mitotic spindle elongation is normal (i.e. indistinguishable from wild type) during prophase.","definition_xrefs":["PMID:28455357","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal rate of mitotic spindle elongation","termid":"FYPO:0004429"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001312","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal rate of mitotic spindle elongation during prophase","synonyms":[{"name":"normal mitotic spindle elongation rate during prophase","type":"exact"},{"name":"normal rate of mitotic spindle elongation during prophase during vegetative growth","type":"exact"},{"name":"normal rate of spindle elongation during mitotic prophase","type":"exact"},{"name":"normal rate of spindle elongation during prophase of mitosis","type":"exact"}],"termid":"FYPO:0006258"}


id: MONDO:0004718
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"noninfectious dermatoses of eyelid","termid":"MONDO:0002137"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"xeroderma of eyelid","secondary_identifiers":["UMLS:C0155179","icd11.foundation:144401595","MEDGEN:509834","ICD9:373.33","DOID:9140","SCTID:55846006"],"termid":"MONDO:0004718","xrefs":{"Monarch":{"xref_id":"0004718"}}}


id: PBO:0036189
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-mitotic_spindle_elongation_without_chromosome_separation_with_centromeric_DNA_dissociated_from_spindle","termid":"PBO:0036189"}


id: PBO:0051568
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 13 receptor subunit alpha 2","termid":"PBO:0051568"}


id: MONDO:0011656
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"bone Paget disease","termid":"MONDO:0005382"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paget disease of bone 4","secondary_identifiers":["MEDGEN:339991","OMIM:606263","MESH:C565240","UMLS:C1853473","DOID:0081367"],"synonyms":[{"name":"PDB4","type":"exact"},{"name":"Paget disease of bone 4","type":"related"}],"termid":"MONDO:0011656","xrefs":{"Monarch":{"xref_id":"0011656"}}}


id: MONDO:0031439
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"short stature, facial dysmorphism, and skeletal anomalies with or without cardiac anomalies","secondary_identifiers":["OMIMPS:617877"],"termid":"MONDO:0031439","xrefs":{"Monarch":{"xref_id":"0031439"}}}


id: MONDO:0007321
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autosomal dominant form of chondrodysplasia punctata.","definition_xrefs":["MONDO:patterns/autosomal_dominant"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"non-rhizomelic chondrodysplasia punctata","termid":"MONDO:0015775"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"autosomal dominant chondrodysplasia punctata","secondary_identifiers":["MEDGEN:303176","Orphanet:79344","MESH:C563248","MONDO:0022728","GARD:1298","OMIM:118650","UMLS:C1442935","DOID:0060293"],"synonyms":[{"name":"chondrodysplasia punctata Sheffield type","type":"exact"},{"name":"chondrodysplasia punctata due to vitamin K deficiency","type":"related"},{"name":"chondrodysplasia punctata due to warfarin teratogenicity","type":"related"},{"name":"chondrodysplasia punctata, Sheffield type","type":"exact"},{"name":"chondrodysplasia punctata, autosomal dominant","type":"exact"}],"termid":"MONDO:0007321","xrefs":{"Monarch":{"xref_id":"0007321"}}}


id: MONDO:0017570
data:
  {"annotated_genes":["SJAG_01960"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85949],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009953"}]},"cv_name":"mondo","definition":"Leukocyte adhesion deficiency (LAD) is a primary immunodeficiency characterized by defects in the leukocyte adhesion process, marked leukocytosis and recurrent infections.","definition_xrefs":["Orphanet:2968"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"functional neutrophil defect","termid":"MONDO:0015978"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01960":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570","MONDO:0006025"],"is_obsolete":false,"name":"leukocyte adhesion deficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:16616","NANDO:2200755","DOID:6612","icd11.foundation:317341989","UMLS:C0272187","MEDGEN:124419","NCIT:C27874","SCTID:77358003","NANDO:1200355"],"synonyms":[{"name":"LAD","type":"broad"},{"name":"congenital leukocyte adherence deficiency","type":"exact"}],"termid":"MONDO:0017570","terms_by_termid":{"MONDO:0009953":null},"xrefs":{"Monarch":{"xref_id":"0017570"}}}


id: MONDO:0002170
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Chronic form of otosalpingitis.","definition_xrefs":["MONDO:patterns/chronic"],"direct_ancestors":[{"relation_name":"is_a","term_name":"otosalpingitis","termid":"MONDO:0002172"},{"relation_name":"is_a","term_name":"chronic otitis media","termid":"MONDO:0021204"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chronic eustachian salpingitis","secondary_identifiers":["UMLS:C0155430","ICD9:381.52","MEDGEN:509962","DOID:1999","SCTID:194269002"],"synonyms":[{"name":"chronic eustachian tube salpingitis","type":"exact"},{"name":"chronic otosalpingitis","type":"exact"},{"name":"otosalpingitis, chronic","type":"exact"}],"termid":"MONDO:0002170","xrefs":{"Monarch":{"xref_id":"0002170"}}}


id: GO:1990923
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that is composed of at least EXD1, TDRD12 and some PIWI protein. The complex is required for MILI slicing-triggered biogenesis and loading of MIWI2 piRNAs.","definition_xrefs":["PMID:26669262"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"PET complex","termid":"GO:1990923"}


id: PBO:0057597
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 934","termid":"PBO:0057597"}


id: PBO:0072215
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S18 pseudogene 14","termid":"PBO:0072215"}


id: GO:0009655
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The pigment-protein complex primarily associated to PSII in higher plants, green algae and cyanobacteria that directly transfers electrons to the reaction center.","definition_xrefs":["GOC:lr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chloroplast thylakoid membrane protein complex","termid":"GO:0098807"},{"relation_name":"part_of","term_name":"PSII associated light-harvesting complex II","termid":"GO:0009517"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"PSII associated light-harvesting complex II, core complex","synonyms":[{"name":"PSII associated light-harvesting complex II, core complex, LHCIIa subcomplex","type":"narrow"},{"name":"PSII associated light-harvesting complex II, core complex, LHCIIc subcomplex","type":"narrow"},{"name":"PSII associated light-harvesting complex II, core complex, LHCIId subcomplex","type":"narrow"}],"termid":"GO:0009655"}


id: PBO:0087611
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the COMPASS (Set1C) histone H3K4 methyltransferase complex; required for Set1C stability and optimal activity; COMPASS methylates histone H3 on lys 4 and is involved in telomeric silencing; subunit of CPF (cleavage and polyadenylation factor), a complex involved in RNAP II transcription termination","termid":"PBO:0087611"}


id: PBO:0002878
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"yippee-like protein","termid":"PBO:0002878"}


id: MONDO:1010237
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Polymicrogyria that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital nervous system disorder, non-human animal","termid":"MONDO:1011308"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polymicrogyria, non-human animal","secondary_identifiers":["OMIA:001100"],"termid":"MONDO:1010237","xrefs":{"Monarch":{"xref_id":"1010237"}}}


id: GO:0045321
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A change in morphology and behavior of a leukocyte resulting from exposure to a specific antigen, mitogen, cytokine, cellular ligand, or soluble factor.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell activation","termid":"GO:0001775"},{"relation_name":"is_a","term_name":"immune system process","termid":"GO:0002376"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"leukocyte activation","secondary_identifiers":["Wikipedia:Immunologic_activation"],"synonyms":[{"name":"immune cell activation","type":"exact"},{"name":"leucocyte activation","type":"exact"}],"termid":"GO:0045321"}


id: MONDO:0011781
data:
  {"annotated_genes":["SJAG_00421"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86094],"is_not":false,"summary":null,"term":"MONDO:0011781"}]},"cv_name":"mondo","definition":"A rare subtype of type I autosomal dominant cerebellar ataxia (ADCA type I). It is characterized by a variable clinical picture which can include dementia, psychiatric disorders, parkinsonism, dystonia, chorea, spasticity, and epilepsy.","definition_xrefs":["Orphanet:98759"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cerebelloparenchymal disorder","termid":"MONDO:0000114"},{"relation_name":"is_a","term_name":"Huntington disease-like syndrome","termid":"MONDO:0015548"},{"relation_name":"is_a","term_name":"autosomal dominant cerebellar ataxia type I","termid":"MONDO:0019792"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00421":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002039"},{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0002039","MONDO:0000426"],"is_obsolete":false,"name":"spinocerebellar ataxia type 17","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["icd11.foundation:1173627424","MESH:C563505","NCIT:C179861","DOID:0050967","UMLS:C1846707","MEDGEN:337637","OMIM:607136","GARD:10469","MESH:C565866","OMIM:213100","SCTID:719249005","OMIM:164700","MESH:C564616"],"synonyms":[{"name":"CPD, late-onset recessive type","type":"related"},{"name":"CPD2","type":"exact"},{"name":"HDL4","type":"exact"},{"name":"Huntington disease-like 4","type":"exact"},{"name":"OPCA V","type":"exact"},{"name":"OPCA with dementia and extrapyramidal signs","type":"exact"},{"name":"SCA 17","type":"exact"},{"name":"SCA17","type":"exact"},{"name":"cerebelloparenchymal disorder II","type":"exact"},{"name":"olivopontocerebellar atrophy 5","type":"exact"},{"name":"olivopontocerebellar atrophy V","type":"related"},{"name":"olivopontocerebellar atrophy type 5","type":"exact"},{"name":"spinocerebellar ataxia 17","type":"exact"},{"name":"spinocerebellar ataxia type 17","type":"exact"}],"termid":"MONDO:0011781","terms_by_termid":{"MONDO:0011781":null},"xrefs":{"Monarch":{"xref_id":"0011781"}}}


id: PBO:0046020
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 2A pseudogene 1","termid":"PBO:0046020"}


id: FYPO:0003491
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to ultraviolet light during G1 phase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensitive to UV during vegetative growth","termid":"FYPO:0000268"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000139","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to UV during mitotic G1 phase","synonyms":[{"name":"decreased growth during cellular response to UV during mitotic G1 phase","type":"exact"},{"name":"decreased vegetative cell population growth during cellular response to UV during mitotic G1 phase","type":"exact"},{"name":"hypersensitive to UV during mitotic G1 phase","type":"exact"},{"name":"increased sensitivity to UV irradiation during mitotic G1 phase","type":"exact"},{"name":"sensitive to UV during G1 phase during vegetative growth","type":"exact"},{"name":"sensitive to UV during G1 phase of mitotic cell cycle","type":"exact"},{"name":"sensitive to ultraviolet light during mitotic G1 phase","type":"exact"}],"termid":"FYPO:0003491"}


id: GO:0004504
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: peptidyl-glycine + ascorbate + O2 = peptidyl(2-hydroxyglycine) + dehydroascorbate + H2O.","definition_xrefs":["EC:1.14.17.3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen","termid":"GO:0016715"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"peptidylglycine monooxygenase activity","secondary_identifiers":["MetaCyc:PEPTIDYLGLYCINE-MONOOXYGENASE-RXN","RHEA:21452"],"synonyms":[{"name":"PAM activity","type":"related"},{"name":"PAM-A","type":"related"},{"name":"PAM-B","type":"related"},{"name":"peptide alpha-amidating enzyme","type":"related"},{"name":"peptide alpha-amide synthase activity","type":"related"},{"name":"peptide-alpha-amide synthetase activity","type":"related"},{"name":"peptidyl alpha-amidating enzyme activity","type":"related"},{"name":"peptidylglycine 2-hydroxylase activity","type":"exact"},{"name":"peptidylglycine alpha-amidating monooxygenase activity","type":"related"},{"name":"peptidylglycine alpha-hydroxylase activity","type":"related"},{"name":"peptidylglycine,ascorbate:oxygen oxidoreductase (2-hydroxylating)","type":"related"},{"name":"synthase, peptide alpha-amide","type":"related"}],"termid":"GO:0004504"}


id: MONDO:0011348
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A congenital anomaly of the hand or foot, marked by the presence of supernumerary digits.","definition_xrefs":["MESH:D017689"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polydactyly","termid":"MONDO:0021003"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-syndromic polydactyly","secondary_identifiers":["Orphanet:2913","icd11.foundation:1534380955","MedDRA:10036063"],"synonyms":[{"name":"Extra digits","type":"related"},{"name":"isolated polydactyly","type":"related"},{"name":"isolated polydactyly (disease)","type":"exact"},{"name":"nonsyndromic polydactyly","type":"exact"},{"name":"nonsyndromic polydactyly (disease)","type":"exact"},{"name":"polydactylia","type":"related"},{"name":"supernumerary digits","type":"related"}],"termid":"MONDO:0011348","xrefs":{"Monarch":{"xref_id":"0011348"}}}


id: PBO:0000272
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6.3.2.19","termid":"PBO:0000272"}


id: PBO:0055535
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2971","termid":"PBO:0055535"}


id: PBO:0004031
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription elongation factor complex subunit Iws1 (predicted)","termid":"PBO:0004031"}


id: PBO:0039008
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ALF transcription elongation factor 3","termid":"PBO:0039008"}


id: GO:0047336
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2'-deoxy-5-methyl-5'-cytidylate + ATP = 5-methyldeoxycytidine diphosphate + ADP + H+.","definition_xrefs":["EC:2.7.4.19","RHEA:11396"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, phosphate group as acceptor","termid":"GO:0016776"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016301","GO:0016740"],"is_obsolete":false,"name":"5-methyldeoxycytidine-5'-phosphate kinase activity","secondary_identifiers":["KEGG_REACTION:R04235","MetaCyc:2.7.4.19-RXN"],"synonyms":[{"name":"ATP:5-methyldeoxycytidine-5'-phosphate phosphotransferase activity","type":"related"}],"termid":"GO:0047336"}


id: PBO:0076633
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transducin beta like 1 Y-linked","termid":"PBO:0076633"}


id: GO:0008706
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 6-phospho-beta-D-glucoside-(1,4)-D-glucose + H2O = D-glucose 6-phosphate + glucose.","definition_xrefs":["EC:3.2.1.86"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta-glucosidase activity","termid":"GO:0008422"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016798","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"6-phospho-beta-glucosidase activity","secondary_identifiers":["MetaCyc:6-PHOSPHO-BETA-GLUCOSIDASE-RXN","RHEA:10772"],"synonyms":[{"name":"6-phospho-beta-D-glucosyl-(1,4)-D-glucose glucohydrolase activity","type":"related"},{"name":"phospho-beta-glucosidase A","type":"related"},{"name":"phospho-beta-glucosidase activity","type":"related"},{"name":"phosphocellobiase activity","type":"related"}],"termid":"GO:0008706"}


id: PBO:0058060
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIR4280 host gene","termid":"PBO:0058060"}


id: MONDO:0003663
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare endometrioid adenocarcinoma that arises from the uterine ligament. Some of the reported cases were associated with endometriosis.","definition_xrefs":["NCIT:C40138"],"direct_ancestors":[{"relation_name":"is_a","term_name":"uterine ligament adenocarcinoma","termid":"MONDO:0002741"},{"relation_name":"is_a","term_name":"cervical endometrioid adenocarcinoma","termid":"MONDO:0003665"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"uterine ligament endometrioid adenocarcinoma","secondary_identifiers":["DOID:5829"],"synonyms":[{"name":"endometrioid adenocarcinoma of uterine ligament","type":"exact"},{"name":"uterine ligament endometrioid adenocarcinoma","type":"exact"}],"termid":"MONDO:0003663","xrefs":{"Monarch":{"xref_id":"0003663"}}}


id: PBO:0109460
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER membrane protein required for translocation of Man5GlcNac2-PP-Dol from the cytoplasmic side to the lumenal side of the ER Rft1","termid":"PBO:0109460"}


id: PBO:0060897
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NEURL1 antisense RNA 1","termid":"PBO:0060897"}


id: MONDO:0035784
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete non-syndromic anorectal malformation with rectovesical fistula (obsolete MONDO:0035784)","secondary_identifiers":["Orphanet:600984"],"termid":"MONDO:0035784","xrefs":{"Monarch":{"xref_id":"0035784"}}}


id: PBO:0065138
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRKX pseudogene 1","termid":"PBO:0065138"}


id: MONDO:0011310
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long chain fatty acids, defect in transport of","secondary_identifiers":["OMIM:603376","MEDGEN:350307","UMLS:C1863958"],"synonyms":[{"name":"long chain fatty acids, defect in TRANSPORT OF","type":"related"}],"termid":"MONDO:0011310","xrefs":{"Monarch":{"xref_id":"0011310"}}}


id: PBO:0031060
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-mixed_population_(obsolete_FYPO:0000317)","termid":"PBO:0031060"}


id: PBO:0062251
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily BR member 1 pseudogene","termid":"PBO:0062251"}


id: FYPO:0006598
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which phosphorylation of threonine at position 3 of histone H3 is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone phosphorylation during vegetative growth","termid":"FYPO:0002591"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0002494","FYPO:0005447","FYPO:0001320","FYPO:0002274"],"is_obsolete":false,"name":"decreased histone H3-T3 phosphorylation during vegetative growth","synonyms":[{"name":"decreased histone H3 phosphorylation at T3 during vegetative growth","type":"exact"},{"name":"decreased histone H3-T3 phosphorylation during mitotic cell cycle","type":"related"},{"name":"decreased histone H3-pT3 during vegetative growth","type":"related"},{"name":"decreased histone H3T3 phosphorylation during vegetative growth","type":"exact"},{"name":"reduced histone H3-T3 phosphorylation during vegetative growth","type":"exact"}],"termid":"FYPO:0006598"}


id: PBO:0076898
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed 52","termid":"PBO:0076898"}


id: PBO:0031306
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-viable_cell","termid":"PBO:0031306"}


id: PBO:0038393
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-multiplicity","termid":"PBO:0038393"}


id: PBO:0063645
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoglycerate mutase 1 pseudogene 2","termid":"PBO:0063645"}


id: MONDO:0044767
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare pheochromocytoma of the adrenal gland that occurs during childhood.","definition_xrefs":["NCIT:C118822"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adrenal gland pheochromocytoma","termid":"MONDO:0004974"},{"relation_name":"is_a","term_name":"childhood neoplasm","termid":"MONDO:0021079"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"childhood adrenal gland pheochromocytoma","secondary_identifiers":["MEDGEN:859271","UMLS:C3899677","GTR:AN0102113","DOID:0070325"],"synonyms":[{"name":"childhood adrenal gland pheochromocytoma","type":"exact"},{"name":"malignant childhood adrenal gland pheochromocytoma","type":"exact"},{"name":"pheochromocytoma, childhood","type":"related"}],"termid":"MONDO:0044767","xrefs":{"Monarch":{"xref_id":"0044767"}}}


id: GO:0032305
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the controlled release of an icosanoid from a cell.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of icosanoid secretion","termid":"GO:0032303"},{"relation_name":"is_a","term_name":"positive regulation of secretion","termid":"GO:0051047"},{"relation_name":"is_a","term_name":"positive regulation of fatty acid transport","termid":"GO:2000193"},{"relation_name":"positively_regulates","term_name":"icosanoid secretion","termid":"GO:0032309"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of icosanoid secretion","synonyms":[{"name":"activation of icosanoid secretion","type":"narrow"},{"name":"positive regulation of eicosanoid secretion","type":"exact"},{"name":"stimulation of icosanoid secretion","type":"narrow"},{"name":"up regulation of icosanoid secretion","type":"exact"},{"name":"up-regulation of icosanoid secretion","type":"exact"},{"name":"upregulation of icosanoid secretion","type":"exact"}],"termid":"GO:0032305"}


id: PBO:0047331
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"filamin binding LIM protein 1","termid":"PBO:0047331"}


id: PBO:0058020
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIR3945 host gene","termid":"PBO:0058020"}


id: MONDO:0018029
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital factor XIII deficiency is an inherited bleeding disorder due to reduced levels and activity of factor XIII (FXIII) and characterized by hemorrhagic diathesis frequently associated with spontaneous abortions and defective wound healing. Factor XIII deficiency is one of the most rare coagulation factor deficiencies.","definition_xrefs":["Orphanet:331"],"direct_ancestors":[{"relation_name":"is_a","term_name":"factor XIII deficiency","termid":"MONDO:0002241"},{"relation_name":"is_a","term_name":"hemorrhagic disease","termid":"MONDO:0002243"},{"relation_name":"is_a","term_name":"congenital hematological disorder","termid":"MONDO:0009332"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"congenital factor XIII deficiency","secondary_identifiers":["NCIT:C131633","GARD:10766","SCTID:50189006","MEDGEN:4639","NANDO:2200681","ICD9:286.3","DOID:2211","UMLS:C0015530"],"synonyms":[{"name":"deficiency, Laki-Lorand factor","type":"exact"},{"name":"factor XIII deficiency","type":"related"},{"name":"factor XIII deficiency disease","type":"exact"},{"name":"fibrin stabilising factor deficiency","type":"related"},{"name":"fibrin stabilizing factor deficiency","type":"related"},{"name":"fibrin-stabilizing factor deficiency","type":"broad"},{"name":"hereditary factor XIII deficiency disease","type":"exact"}],"termid":"MONDO:0018029","xrefs":{"Monarch":{"xref_id":"0018029"}}}


id: PBO:0051441
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin lambda variable 3-26 (pseudogene)","termid":"PBO:0051441"}


id: FYPO:0004193
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell during S phase of the mitotic cell cycle is lower than normal. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein level during vegetative growth","termid":"FYPO:0001324"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0006551","FYPO:0005447","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"decreased protein level during mitotic S phase","synonyms":[{"name":"decreased protein accumulation during mitotic S phase","type":"related"},{"name":"decreased protein level during S phase of mitotic cell cycle","type":"exact"},{"name":"decreased protein level during mitotic S phase during vegetative growth","type":"exact"},{"name":"reduced protein level during mitotic S phase","type":"exact"}],"termid":"FYPO:0004193"}


id: MONDO:0017290
data:
  {"annotated_genes":["SJAG_00938","SJAG_05194","SJAG_03363","SJAG_03011"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87120],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011559"},{"annotations":[87367],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013995"},{"annotations":[87304,87305],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030810"},{"annotations":[86209],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0031040"},{"annotations":[87243],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011156"},{"annotations":[85876],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011214"}]},"cv_name":"mondo","definition":"An instance of intrahepatic cholestasis that is caused by an inherited modification of the individual's genome.","definition_xrefs":["MONDO:patterns/hereditary"],"direct_ancestors":[{"relation_name":"is_a","term_name":"liver disorder","termid":"MONDO:0005154"},{"relation_name":"is_a","term_name":"inborn errors of metabolism","termid":"MONDO:0019052"},{"relation_name":"is_a","term_name":"intrahepatic cholestasis","termid":"MONDO:0019072"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00938":null,"SJAG_03011":null,"SJAG_03363":null,"SJAG_05194":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0002515","MONDO:0005066"],"is_obsolete":false,"name":"familial intrahepatic cholestasis","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["Orphanet:284385","ICD9:576.8","GARD:21119","SCTID:74162007"],"synonyms":[{"name":"hereditary intrahepatic cholestasis","type":"exact"}],"termid":"MONDO:0017290","terms_by_termid":{"MONDO:0011156":null,"MONDO:0011214":null,"MONDO:0011559":null,"MONDO:0013995":null,"MONDO:0030810":null,"MONDO:0031040":null},"xrefs":{"Monarch":{"xref_id":"0017290"}}}


id: MONDO:0006543
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A genetic skin disorder caused by mutations in the type VII collagen gene (COL7A1). It is characterized by the formation of blisters and scarring in the skin and mucous membranes.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"epidermolysis bullosa","termid":"MONDO:0006541"},{"relation_name":"is_a","term_name":"inherited epidermolysis bullosa","termid":"MONDO:0019276"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"epidermolysis bullosa dystrophica","secondary_identifiers":["MEDGEN:37179","UMLS:C0079294","MESH:D016108","EFO:1000692","ICD9:757.39","GARD:2150","NCIT:C84691","Orphanet:303","SCTID:254185007","DOID:4959","Wikipedia:Epidermolysis_bullosa_dystrophica","icd11.foundation:1060981106"],"synonyms":[{"name":"DEB","type":"exact"},{"name":"dermolytic epidermolysis bullosa","type":"exact"},{"name":"epidermolysis bullosa dystrophica","type":"exact"},{"name":"epidermolysis bullosa, dermolytic","type":"related"}],"termid":"MONDO:0006543","xrefs":{"Monarch":{"xref_id":"0006543"}}}


id: PBO:0073137
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SEC22 homolog A, vesicle trafficking protein","termid":"PBO:0073137"}


id: PBO:0077022
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioesterase superfamily member 4 pseudogene 1","termid":"PBO:0077022"}


id: PBO:0055797
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lipoprotein(a) like 1","termid":"PBO:0055797"}


id: PBO:0108689
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TRAPP I, II and III complex RabGEF subunit Bet5","termid":"PBO:0108689"}


id: GO:0018002
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The acetylation of the N-terminal glutamic acid of proteins to form the derivate acetyl-glutamic acid.","definition_xrefs":["RESID:AA0044"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-terminal protein amino acid acetylation","termid":"GO:0006474"},{"relation_name":"is_a","term_name":"peptidyl-glutamic acid modification","termid":"GO:0018200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051604"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0051604","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"N-terminal peptidyl-glutamic acid acetylation","termid":"GO:0018002"}


id: PBO:0081496
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 394","termid":"PBO:0081496"}


id: PBO:0068769
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 6, pseudogene","termid":"PBO:0068769"}


id: MONDO:1011968
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"musculoskeletal system disorder, non-human animal","termid":"MONDO:1011335"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lethal arthrogryposis syndrome, non-human animal","secondary_identifiers":["OMIA:001953"],"termid":"MONDO:1011968","xrefs":{"Monarch":{"xref_id":"1011968"}}}


id: MONDO:0015872
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete giant adenofibroma of the breast (obsolete MONDO:0015872)","termid":"MONDO:0015872","xrefs":{"Monarch":{"xref_id":"0015872"}}}


id: PBO:0040222
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arginyltransferase 1","termid":"PBO:0040222"}


id: PBO:0066920
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 222","termid":"PBO:0066920"}


id: PBO:0091466
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial translational activator, Mpa1","termid":"PBO:0091466"}


id: PBO:0044831
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defensin beta 118","termid":"PBO:0044831"}


id: MONDO:0004503
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A meningioma that affects the upper clivus.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"clivus meningioma","termid":"MONDO:0003908"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"upper clivus meningioma","secondary_identifiers":["DOID:8221","UMLS:C1336871","MEDGEN:234454","NCIT:C5290"],"synonyms":[{"name":"meningioma of the upper clivus","type":"exact"},{"name":"meningioma of upper clivus","type":"exact"}],"termid":"MONDO:0004503","xrefs":{"Monarch":{"xref_id":"0004503"}}}


id: PBO:0058727
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6855","termid":"PBO:0058727"}


id: MONDO:0017348
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Lymphoepithelial-like carcinoma is a rare, malignant epithelial tumor, composed of undifferentiated epithelial cells with dense lymphoid stroma, mimicking lymphoepithelioma. It often shows association with Epstein-Barr virus infection and can develop in various organs, such as the nasopharynx, stomach, skin, breast and lungs, among others. The presenting symptoms, as well as the radiologic features, are usually nonspecific and depend on the affected site and organ.","definition_xrefs":["Orphanet:289682"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Epstein-Barr virus-associated carcinoma","termid":"MONDO:0017344"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lymphoepithelial-like carcinoma","secondary_identifiers":["GARD:21151"],"termid":"MONDO:0017348","xrefs":{"Monarch":{"xref_id":"0017348"}}}


id: GO:0004120
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: nucleoside cyclic phosphate + H2O = nucleoside phosphate. This reaction is the hydrolysis of bonds in a cyclic nucleotide.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete photoreceptor cyclic-nucleotide phosphodiesterase activity (obsolete GO:0004120)","termid":"GO:0004120"}


id: PBO:0087599
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the BLOC-1 complex involved in endosomal maturation; interacts with Msb3p; null mutant is sensitive to drug inducing secretion of vacuolar cargo; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm","termid":"PBO:0087599"}


id: SO:0001535
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A P-element is a DNA transposon responsible for hybrid dysgenesis. P elements in this terminal inverted repeat (TIR) transposon superfamily have 31 bp perfect TIR and upon insertion duplicate an 8 bp sequence. It contains transposase that may lack the DDE domain.","definition_xrefs":["PMID:6309410","SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terminal_inverted_repeat_element","termid":"SO:0000208"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"P_TIR_transposon","synonyms":[{"name":"DTP transposon","type":"exact"},{"name":"P TIR transposon","type":"exact"},{"name":"P element","type":"exact"},{"name":"P transposable element","type":"exact"},{"name":"P-element","type":"exact"}],"termid":"SO:0001535"}


id: PBO:0050654
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein 90 alpha family class B member 4, pseudogene","termid":"PBO:0050654"}


id: PBO:0055309
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2736","termid":"PBO:0055309"}


id: PBO:0017936
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA methyltransferase Pmt1","termid":"PBO:0017936"}


id: GO:0035449
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The component of a plastid thylakoid membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.","definition_xrefs":["GOC:bf","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extrinsic component of thylakoid membrane","termid":"GO:0035448"},{"relation_name":"is_a","term_name":"extrinsic component of plastid membrane","termid":"GO:0035452"},{"relation_name":"part_of","term_name":"plastid thylakoid membrane","termid":"GO:0055035"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"extrinsic component of plastid thylakoid membrane","synonyms":[{"name":"extrinsic to plastid thylakoid membrane","type":"narrow"},{"name":"peripheral to plastid thylakoid membrane","type":"exact"}],"termid":"GO:0035449"}


id: GO:0047945
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-glutamine + pyruvate = 2-oxoglutaramate + L-alanine.","definition_xrefs":["EC:2.6.1.15","RHEA:10400"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-glutamine aminotransferase activity","termid":"GO:0070548"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0016769","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"L-glutamine:pyruvate aminotransferase activity","secondary_identifiers":["KEGG_REACTION:R00576","MetaCyc:GLUTAMINE--PYRUVATE-AMINOTRANSFERASE-RXN","Reactome:R-HSA-893616"],"synonyms":[{"name":"L-glutamine transaminase L","type":"related"},{"name":"gamma-glutaminyltransferase activity","type":"related"},{"name":"glutaminase II activity","type":"related"},{"name":"glutamine transaminase L activity","type":"broad"},{"name":"glutamine transaminase activity","type":"broad"},{"name":"glutamine--oxo-acid transaminase activity","type":"broad"},{"name":"glutamine--pyruvate aminotransferase activity","type":"broad"},{"name":"glutamine-alpha-keto acid transamidase activity","type":"broad"},{"name":"glutamine-alpha-keto acid transaminase activity","type":"broad"},{"name":"glutamine-keto acid aminotransferase activity","type":"broad"},{"name":"glutamine-oxo acid aminotransferase activity","type":"broad"},{"name":"glutamine-pyruvate transaminase activity","type":"broad"}],"termid":"GO:0047945"}


id: GO:0160223
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A specialized membranous structure that extends from the photosynthetic thylakoid membrane into and transverses the matrix of a pyrenoid.","definition_xrefs":["PMID:32428480"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"pyrenoid","termid":"GO:1990732"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"pyrenoid tubule","synonyms":[{"name":"thylakoid membrane tubule","type":"exact"}],"termid":"GO:0160223"}


id: MONDO:0011281
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital myasthenic syndrome caused by mutation(s) in the COLQ gene, encoding acetylcholinesterase collagenic tail peptide. It is inherited in an autosomal recessive manner.","definition_xrefs":["NCIT:C129304"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital myasthenic syndrome","termid":"MONDO:0018940"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital myasthenic syndrome 5","secondary_identifiers":["DOID:0110667","GARD:18210","MEDGEN:400481","OMIM:603034","MESH:C566415","NANDO:1201056","UMLS:C1864233"],"synonyms":[{"name":"CMS Ic","type":"exact"},{"name":"CMS5","type":"exact"},{"name":"COLQ congenital myasthenic syndrome","type":"exact"},{"name":"Cms Ic","type":"related"},{"name":"Cms Ic, formerly","type":"related"},{"name":"EAD","type":"exact"},{"name":"Engel congenital myasthenic syndrome","type":"exact"},{"name":"congenital myasthenic syndrome 5","type":"exact"},{"name":"congenital myasthenic syndrome Engel type","type":"exact"},{"name":"congenital myasthenic syndrome caused by mutation in COLQ","type":"exact"},{"name":"congenital myasthenic syndrome type 5","type":"exact"},{"name":"congenital myasthenic syndrome type Ic","type":"exact"},{"name":"congenital myasthenic syndrome type Ic, formerly","type":"related"},{"name":"end plate acetylcholinesterase deficiency","type":"exact"},{"name":"endplate acetylcholinesterase deficiency","type":"related"},{"name":"myasthenic syndrome, congenital, 5","type":"related"},{"name":"myasthenic syndrome, congenital, Engel type","type":"related"},{"name":"myasthenic syndrome, congenital, type 5","type":"exact"}],"termid":"MONDO:0011281","xrefs":{"Monarch":{"xref_id":"0011281"}}}


id: PBO:0046753
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exocyst complex component 6B","termid":"PBO:0046753"}


id: GO:0180048
data:
  {"annotated_genes":["SJAG_04537"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[111508],"is_not":false,"summary":null,"term":"GO:0180048"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of phosphatidylinositol 4-phosphate.","definition_xrefs":["PMID:39239853"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biosynthetic process","termid":"GO:0009058"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04537":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"phosphatidylinositol 4-phosphate biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"1-phosphatidyl-1D-myo-inositol 4-phosphate biosynthesis","type":"exact"},{"name":"1-phosphatidyl-1D-myo-inositol biosynthetic process","type":"exact"},{"name":"PI4P biosynthesis","type":"exact"},{"name":"phosphatidylinositol (PI)-4- phosphate biosynthetic process","type":"exact"},{"name":"phosphatidylinositol-4-phosphate synthesis","type":"exact"}],"termid":"GO:0180048","terms_by_termid":{"GO:0180048":null}}


id: PBO:0044726
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD/H-box helicase 11 like 15 (pseudogene)","termid":"PBO:0044726"}


id: GO:0090605
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which planktonically growing microorganisms aggregate and grow on solid substrates under the flow of a liquid and produce extracellular polymers that facilitate attachment and matrix formation, resulting in a change in the organisms' growth rate and gene transcription.","definition_xrefs":["GOC:di","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biofilm formation","termid":"GO:0042710"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"submerged biofilm formation","synonyms":[{"name":"solid substrate biofilm formation","type":"related"}],"termid":"GO:0090605"}


id: GO:0019969
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to interleukin-10.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"growth factor binding","termid":"GO:0019838"},{"relation_name":"is_a","term_name":"cytokine binding","termid":"GO:0019955"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"interleukin-10 binding","synonyms":[{"name":"IL-10 binding","type":"exact"}],"termid":"GO:0019969"}


id: PBO:0085547
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein component of the small (40S) ribosomal subunit; required for assembly and maturation of pre-40 S particles; homologous to mammalian ribosomal protein S19, no bacterial homolog; mutations in human RPS19 are associated with Diamond Blackfan anemia; RPS19B has a paralog, RPS19A, that arose from the whole genome duplication","termid":"PBO:0085547"}


id: PATO:0001157
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001157 absolute concentration value (obsolete PATO:0001157)","termid":"PATO:0001157"}


id: PBO:0069073
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 320, pseudogene","termid":"PBO:0069073"}


id: MONDO:0859210
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"chromosomal disorder","termid":"MONDO:0019040"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 16q12 duplication syndrome","secondary_identifiers":["UMLS:C5562082","MEDGEN:1794292","OMIM:619649"],"termid":"MONDO:0859210","xrefs":{"Monarch":{"xref_id":"0859210"}}}


id: PBO:0053857
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1127","termid":"PBO:0053857"}


id: PBO:0061885
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"outer mitochondrial membrane lipid metabolism regulator OPA3","termid":"PBO:0061885"}


id: RO:0002513
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"inverse of ribosomal translation of","direct_ancestors":[{"relation_name":"is_a","term_name":"genomically_related_to","termid":"RO:0002330"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomally_translates_to","termid":"RO:0002513"}


id: PBO:0054610
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2015","termid":"PBO:0054610"}


id: PBO:0083885
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ferrochelatase; a mitochondrial inner membrane protein, catalyzes insertion of ferrous iron into protoporphyrin IX, the eighth and final step in the heme biosynthetic pathway; human homolog FECH can complement yeast mutant and allow growth of haploid null after sporulation of a heterozygous diploid","termid":"PBO:0083885"}


id: FYPO:0004126
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which trimethylation of lysine at position 4 of histone H3 does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished histone H3-K4 methylation during vegetative growth","termid":"FYPO:0002917"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0002494","FYPO:0002274","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"abolished histone H3-K4 trimethylation during vegetative growth","synonyms":[{"name":"abolished histone H3 K4 trimethylation during vegetative growth","type":"exact"},{"name":"abolished histone H3-K4 trimethylation during mitotic cell cycle","type":"related"},{"name":"abolished histone H3K4me3 during vegetative growth","type":"exact"},{"name":"abolished histone lysine H3 K4 trimethylation during vegetative growth","type":"exact"},{"name":"histone H3-K4 trimethylation abolished during vegetative growth","type":"exact"},{"name":"histone H3-K4 trimethylation absent during vegetative growth","type":"exact"}],"termid":"FYPO:0004126"}


id: MOD:00749
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes a sulfur atom for an oxygen atom.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur containing modified residue","termid":"MOD:00860"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfur substitution for oxygen","synonyms":[{"name":"S(O)Res","type":"exact"}],"termid":"MOD:00749"}


id: PBO:0087390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Steryl ester hydrolase; one of three gene products (Yeh1p, Yeh2p, Tgl1p) responsible for steryl ester hydrolase activity and involved in sterol homeostasis; localized to lipid particle membranes","termid":"PBO:0087390"}


id: MONDO:0035541
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete split cord malformation type II (obsolete MONDO:0035541)","secondary_identifiers":["Orphanet:573253"],"termid":"MONDO:0035541","xrefs":{"Monarch":{"xref_id":"0035541"}}}


id: PR:G2TRM1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC977.18 gene.","definition_xrefs":["PRO:DNx","UniProtKB:G2TRM1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPF0768 protein C977.18 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC977.18","synonyms":[{"name":"Spom972h-SPAC977.18","type":"exact"}],"termid":"PR:G2TRM1"}


id: GO:0102516
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: delphinidin 3-O-beta-D-glucoside + 1-O-feruloyl-beta-D-glucose = delphinidin 3,7-di O-beta-D-glucoside + ferulate + H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete delphinidin 3-O-glucoside 7-O-glucosyltransferase (feruloyl-glucose dependent) activity (obsolete GO:0102516)","termid":"GO:0102516"}


id: PBO:0067279
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 359, pseudogene","termid":"PBO:0067279"}


id: GO:0060672
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The change in form (cell shape and size) that occurs when a trophoblast cell elongates to contribute to the branching of the placenta.","definition_xrefs":["GOC:ascb_2009","PMID:16916377","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell morphogenesis","termid":"GO:0003382"},{"relation_name":"is_a","term_name":"embryonic morphogenesis","termid":"GO:0048598"},{"relation_name":"part_of","term_name":"branching involved in labyrinthine layer morphogenesis","termid":"GO:0060670"},{"relation_name":"part_of","term_name":"epithelial cell differentiation involved in embryonic placenta development","termid":"GO:0060671"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epithelial cell morphogenesis involved in placental branching","termid":"GO:0060672"}


id: MONDO:0016330
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An instance of hypertrophic cardiomyopathy that is acquired during the lifetime of the individual.","definition_xrefs":["MONDO:patterns/acquired"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hypertrophic cardiomyopathy","termid":"MONDO:0005045"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"non-familial hypertrophic cardiomyopathy","secondary_identifiers":["Orphanet:217598","MEDGEN:1843178","UMLS:C5680883"],"synonyms":[{"name":"acquired hypertrophic cardiomyopathy","type":"exact"}],"termid":"MONDO:0016330","xrefs":{"Monarch":{"xref_id":"0016330"}}}


id: MONDO:0005783
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An accumulation of blood within the pericardial sac.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pericardial effusion","termid":"MONDO:0001370"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"hemopericardium","secondary_identifiers":["HP:0011851","SCTID:23412002","DOID:11482","ICD9:423.0","EFO:0007298","UMLS:C0019064","MEDGEN:6795"],"synonyms":[{"name":"haemopericardium","type":"exact"},{"name":"hemopericardium","type":"exact"},{"name":"hemopericardium (disease)","type":"exact"}],"termid":"MONDO:0005783","xrefs":{"Monarch":{"xref_id":"0005783"}}}


id: GO:1904775
data:
  {"annotated_genes":["SJAG_01672"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89514],"is_not":false,"summary":null,"term":"GO:1904775"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of ubiquinone biosynthetic process.","definition_xrefs":["PMID:8125303","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of biosynthetic process","termid":"GO:0009891"},{"relation_name":"is_a","term_name":"regulation of ubiquinone biosynthetic process","termid":"GO:0010795"},{"relation_name":"is_a","term_name":"positive regulation of small molecule metabolic process","termid":"GO:0062013"},{"relation_name":"positively_regulates","term_name":"ubiquinone biosynthetic process","termid":"GO:0006744"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01672":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006744"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"positively_regulates","termid":"GO:0006744"}],"interesting_parent_ids":["GO:0044281","GO:0006744","GO:0008150"],"is_obsolete":false,"name":"positive regulation of ubiquinone biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of coenzyme Q biosynthesis","type":"narrow"},{"name":"activation of coenzyme Q biosynthetic process","type":"narrow"},{"name":"activation of coenzyme Q10 biosynthesis","type":"narrow"},{"name":"activation of coenzyme Q10 biosynthetic process","type":"narrow"},{"name":"activation of coenzyme Q6 biosynthesis","type":"narrow"},{"name":"activation of coenzyme Q6 biosynthetic process","type":"narrow"},{"name":"activation of coenzyme Q8 biosynthesis","type":"narrow"},{"name":"activation of coenzyme Q8 biosynthetic process","type":"narrow"},{"name":"activation of coenzyme Q9 biosynthesis","type":"narrow"},{"name":"activation of coenzyme Q9 biosynthetic process","type":"narrow"},{"name":"activation of ubiquinone anabolism","type":"narrow"},{"name":"activation of ubiquinone biosynthesis","type":"narrow"},{"name":"activation of ubiquinone biosynthetic process","type":"narrow"},{"name":"activation of ubiquinone formation","type":"narrow"},{"name":"activation of ubiquinone synthesis","type":"narrow"},{"name":"positive regulation of coenzyme Q biosynthesis","type":"exact"},{"name":"positive regulation of coenzyme Q biosynthetic process","type":"exact"},{"name":"positive regulation of coenzyme Q10 biosynthesis","type":"narrow"},{"name":"positive regulation of coenzyme Q10 biosynthetic process","type":"narrow"},{"name":"positive regulation of coenzyme Q6 biosynthesis","type":"narrow"},{"name":"positive regulation of coenzyme Q6 biosynthetic process","type":"narrow"},{"name":"positive regulation of coenzyme Q8 biosynthesis","type":"narrow"},{"name":"positive regulation of coenzyme Q8 biosynthetic process","type":"narrow"},{"name":"positive regulation of coenzyme Q9 biosynthesis","type":"narrow"},{"name":"positive regulation of coenzyme Q9 biosynthetic process","type":"narrow"},{"name":"positive regulation of ubiquinone anabolism","type":"exact"},{"name":"positive regulation of ubiquinone biosynthesis","type":"exact"},{"name":"positive regulation of ubiquinone formation","type":"exact"},{"name":"positive regulation of ubiquinone synthesis","type":"exact"},{"name":"up regulation of coenzyme Q biosynthesis","type":"exact"},{"name":"up regulation of coenzyme Q biosynthetic process","type":"exact"},{"name":"up regulation of coenzyme Q10 biosynthesis","type":"narrow"},{"name":"up regulation of coenzyme Q10 biosynthetic process","type":"narrow"},{"name":"up regulation of coenzyme Q6 biosynthesis","type":"narrow"},{"name":"up regulation of coenzyme Q6 biosynthetic process","type":"narrow"},{"name":"up regulation of coenzyme Q8 biosynthesis","type":"narrow"},{"name":"up regulation of coenzyme Q8 biosynthetic process","type":"narrow"},{"name":"up regulation of coenzyme Q9 biosynthesis","type":"narrow"},{"name":"up regulation of coenzyme Q9 biosynthetic process","type":"narrow"},{"name":"up regulation of ubiquinone anabolism","type":"exact"},{"name":"up regulation of ubiquinone biosynthesis","type":"exact"},{"name":"up regulation of ubiquinone biosynthetic process","type":"exact"},{"name":"up regulation of ubiquinone formation","type":"exact"},{"name":"up regulation of ubiquinone synthesis","type":"exact"},{"name":"up-regulation of coenzyme Q biosynthesis","type":"exact"},{"name":"up-regulation of coenzyme Q biosynthetic process","type":"exact"},{"name":"up-regulation of coenzyme Q10 biosynthesis","type":"narrow"},{"name":"up-regulation of coenzyme Q10 biosynthetic process","type":"narrow"},{"name":"up-regulation of coenzyme Q6 biosynthesis","type":"narrow"},{"name":"up-regulation of coenzyme Q6 biosynthetic process","type":"narrow"},{"name":"up-regulation of coenzyme Q8 biosynthesis","type":"narrow"},{"name":"up-regulation of coenzyme Q8 biosynthetic process","type":"narrow"},{"name":"up-regulation of coenzyme Q9 biosynthesis","type":"narrow"},{"name":"up-regulation of coenzyme Q9 biosynthetic process","type":"narrow"},{"name":"up-regulation of ubiquinone anabolism","type":"exact"},{"name":"up-regulation of ubiquinone biosynthesis","type":"exact"},{"name":"up-regulation of ubiquinone biosynthetic process","type":"exact"},{"name":"up-regulation of ubiquinone formation","type":"exact"},{"name":"up-regulation of ubiquinone synthesis","type":"exact"},{"name":"upregulation of coenzyme Q biosynthesis","type":"exact"},{"name":"upregulation of coenzyme Q biosynthetic process","type":"exact"},{"name":"upregulation of coenzyme Q10 biosynthesis","type":"narrow"},{"name":"upregulation of coenzyme Q10 biosynthetic process","type":"narrow"},{"name":"upregulation of coenzyme Q6 biosynthesis","type":"narrow"},{"name":"upregulation of coenzyme Q6 biosynthetic process","type":"narrow"},{"name":"upregulation of coenzyme Q8 biosynthesis","type":"narrow"},{"name":"upregulation of coenzyme Q8 biosynthetic process","type":"narrow"},{"name":"upregulation of coenzyme Q9 biosynthesis","type":"narrow"},{"name":"upregulation of coenzyme Q9 biosynthetic process","type":"narrow"},{"name":"upregulation of ubiquinone anabolism","type":"exact"},{"name":"upregulation of ubiquinone biosynthesis","type":"exact"},{"name":"upregulation of ubiquinone biosynthetic process","type":"exact"},{"name":"upregulation of ubiquinone formation","type":"exact"},{"name":"upregulation of ubiquinone synthesis","type":"exact"}],"termid":"GO:1904775","terms_by_termid":{"GO:1904775":null}}


id: PBO:0005466
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi transport complex subunit Cog4 (predicted)","termid":"PBO:0005466"}


id: PBO:0053524
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 519","termid":"PBO:0053524"}


id: PBO:0047189
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 207 member B, pseudogene","termid":"PBO:0047189"}


id: PBO:0050716
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family D (Hsp60) member 1 pseudogene 2","termid":"PBO:0050716"}


id: MONDO:0010094
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Spondylocarpotarsal synostosis (SCT) syndrome is a skeletal dysplasia clinically characterized by postnatal progressive vertebral fusions frequently manifesting as block vertebrae, contributing to an undersized trunk and a disproportionate short stature, scoliosis, lordosis, carpal and tarsal synostosis, with club feet and a mild facial dysmorphism.","definition_xrefs":["Orphanet:3275"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bone development disease","termid":"MONDO:0005497"},{"relation_name":"is_a","term_name":"filamin-related bone disorder","termid":"MONDO:0019690"},{"relation_name":"is_a","term_name":"spondylodysplastic dysplasia","termid":"MONDO:0019694"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"spondylocarpotarsal synostosis syndrome","secondary_identifiers":["SCTID:702351004","DOID:0090116","MEDGEN:341339","MESH:C535780","OMIM:272460","ICD9:758.89","UMLS:C1848934","GARD:4974"],"synonyms":[{"name":"SCT","type":"exact"},{"name":"Synspondylism","type":"exact"},{"name":"Synspondylism congenital","type":"related"},{"name":"Synspondylism, congenital","type":"related"},{"name":"congenital scoliosis with unilateral unsegmented bar","type":"exact"},{"name":"congenital synspondylism","type":"exact"},{"name":"scoliosis, congenital with unilateral unsegmented bar","type":"related"},{"name":"scoliosis, congenital, with unilateral unsegmented Bar","type":"related"},{"name":"spondylocarpotarsal syndrome","type":"exact"},{"name":"spondylocarpotarsal synostosis","type":"exact"},{"name":"spondylocarpotarsal synostosis syndrome","type":"exact"},{"name":"vertebral fusion with carpal coalition","type":"exact"}],"termid":"MONDO:0010094","xrefs":{"Monarch":{"xref_id":"0010094"}}}


id: PBO:0000200
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diadenosine 5',5'''-p1,p6-hexaphosphate hydrolase Aps1","termid":"PBO:0000200"}


id: MONDO:0021060
data:
  {"annotated_genes":["SJAG_02536","SJAG_03453","SJAG_02342","SJAG_01181","SJAG_02923","SJAG_03126","SJAG_00993"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85360],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014112"},{"annotations":[85362,85361,85363],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014113"},{"annotations":[85368,85367,85366],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014114"},{"annotations":[85524],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009026"},{"annotations":[87589,87590,87591],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008104"},{"annotations":[86109],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0033669"},{"annotations":[86979],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012371"},{"annotations":[86776],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013186"},{"annotations":[85848,85847],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0054588"}]},"cv_name":"mondo","definition":"Developmental syndromes caused by germline mutations (or in rare cases by somatic mosaicism) in genes that alter the Ras subfamily and mitogen-activated protein kinases that control signal transduction.","definition_xrefs":["Wikipedia:RASopathy"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00993":null,"SJAG_01181":null,"SJAG_02342":null,"SJAG_02536":null,"SJAG_02923":null,"SJAG_03126":null,"SJAG_03453":null},"genotype_count":0,"is_obsolete":false,"name":"RASopathy","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:22213","NCIT:C179667","DOID:0080690","EFO:1001502","MEDGEN:1792298","Orphanet:536391","UMLS:C5555857"],"synonyms":[{"name":"RASopathy","type":"exact"},{"name":"Ras protein signal transduction disease","type":"exact"},{"name":"disorder of Ras protein signal transduction","type":"exact"}],"termid":"MONDO:0021060","terms_by_termid":{"MONDO:0008104":null,"MONDO:0009026":null,"MONDO:0012371":null,"MONDO:0013186":null,"MONDO:0014112":null,"MONDO:0014113":null,"MONDO:0014114":null,"MONDO:0033669":null,"MONDO:0054588":null},"xrefs":{"Monarch":{"xref_id":"0021060"}}}


id: GO:0019634
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving phosphonates, any organic compounds containing one or more C-PO(OH)2 or C-PO(OR)2 (with R=alkyl, aryl) groups. Metabolism of phosphonic acid itself, an inorganic compound without the biochemically relevant C-P bond, is not included.","definition_xrefs":["GOC:js","ISBN:0721662544"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphorus metabolic process","termid":"GO:0006793"},{"relation_name":"is_a","term_name":"oxoacid metabolic process","termid":"GO:0043436"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"organic phosphonate metabolic process","synonyms":[{"name":"organophosphonate metabolic process","type":"related"},{"name":"phosphonate metabolism","type":"exact"}],"termid":"GO:0019634"}


id: PBO:0066703
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA component of 7SK nuclear ribonucleoprotein","termid":"PBO:0066703"}


id: MONDO:0016906
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Chromosome 7q deletion is a chromosome abnormality that occurs when there is a missing copy of the genetic material located on the long arm (q) of chromosome 7. The severity of the condition and the signs and symptoms depend on the size and location of the deletion and which genes are involved. Features that often occur in people with chromosome 7q deletion include developmental delay, intellectual disability, behavioral problems, and distinctive facial features. Most cases are not inherited, but people can pass the deletion on to their children. Treatment is based on the signs and symptoms present in each person.","definition_xrefs":["GARD:0003765"],"direct_ancestors":[{"relation_name":"is_a","term_name":"partial deletion of chromosome 7","termid":"MONDO:0016872"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"partial deletion of the long arm of chromosome 7","secondary_identifiers":["Orphanet:262056","MEDGEN:1825969","GARD:3765","icd11.foundation:1458081087","UMLS:C5679676","NCIT:C36408"],"synonyms":[{"name":"7q deletion","type":"related"},{"name":"7q monosomy","type":"related"},{"name":"del(7q)","type":"related"},{"name":"deletion 7q","type":"related"},{"name":"loss of chromosome 7q","type":"related"},{"name":"monosomy 7q","type":"related"},{"name":"partial deletion of chromosome 7q","type":"exact"},{"name":"partial deletion of the long arm of chromosome type 7","type":"exact"},{"name":"partial monosomy 7q","type":"related"},{"name":"partial monosomy of chromosome 7q","type":"exact"},{"name":"partial monosomy of the long arm of chromosome 7","type":"exact"}],"termid":"MONDO:0016906","xrefs":{"Monarch":{"xref_id":"0016906"}}}


id: GO:0031712
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a B1 bradykinin receptor.","definition_xrefs":["GOC:nln","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bradykinin receptor binding","termid":"GO:0031711"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"B1 bradykinin receptor binding","synonyms":[{"name":"B1 bradykinin receptor ligand","type":"narrow"}],"termid":"GO:0031712"}


id: GO:0150018
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a basal dendrite over time, from its formation to the mature structure.","definition_xrefs":["PMID:22683681","GOC:bc","GOC:aruk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dendrite development","termid":"GO:0016358"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"basal dendrite development","termid":"GO:0150018"}


id: MONDO:0020415
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Kommerell diverticulum (KD) is a developmental anomaly of the aortic arch characterized by a diverticulum at the proximal descending aorta of left or right arch configuration that gives rise to an aberrant subclavian artery. KD is primarily asymptomatic but may become symptomatic secondary to dilatation of KD, atheroma and fibrotic changes in paratracheal or paraesophageal tissue, presenting with signs of tracheal compression (more common in children), esophageal compression (dysphagia lusoria; more common in patients with a right sided aortic arch), chest pain, or blood pressure difference in the upper limbs. KD may also predispose toward aortic dissection or rupture.","definition_xrefs":["Orphanet:99077"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aortic arch defects","termid":"MONDO:0015236"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Kommerell diverticulum","secondary_identifiers":["GARD:19637","MEDGEN:488820","SCTID:74561007","UMLS:C0265885"],"termid":"MONDO:0020415","xrefs":{"Monarch":{"xref_id":"0020415"}}}


id: PBO:0085770
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein kinase with similarity to mammalian PDK1 and yeast Pkh1p/Phk2p; yeast Pkh1p and Pkh2p are two redundant upstream activators of Pkc1p; identified as a multicopy suppressor of a pkh1 pkh2 double mutant","termid":"PBO:0085770"}


id: GO:0061221
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of a mesonephric mesenchymal tissue are generated and organized. Mesonephric mesenchyme is the tissue made up of loosely connected mesenchymal cells in the mesonephros.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kidney mesenchyme morphogenesis","termid":"GO:0072131"},{"relation_name":"part_of","term_name":"mesonephric mesenchyme development","termid":"GO:0061219"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesonephric mesenchyme morphogenesis","termid":"GO:0061221"}


id: GO:0072040
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that reduces the occurrence or rate of mesenchymal stem cell death by apoptotic process that contributes to the shaping of the nephron.","definition_xrefs":["GOC:mtg_kidney_jan10","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mesenchymal cell apoptotic process involved in nephron morphogenesis","termid":"GO:0072039"},{"relation_name":"is_a","term_name":"negative regulation of apoptotic process involved in morphogenesis","termid":"GO:1902338"},{"relation_name":"is_a","term_name":"negative regulation of somatic stem cell population maintenance","termid":"GO:1904673"},{"relation_name":"is_a","term_name":"negative regulation of mesenchymal cell apoptotic process","termid":"GO:2001054"},{"relation_name":"negatively_regulates","term_name":"mesenchymal stem cell maintenance involved in nephron morphogenesis","termid":"GO:0072038"},{"relation_name":"negatively_regulates","term_name":"mesenchymal cell apoptotic process involved in nephron morphogenesis","termid":"GO:1901145"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of mesenchymal cell apoptotic process involved in nephron morphogenesis","synonyms":[{"name":"negative regulation of mesenchymal stem cell apoptosis involved in nephron morphogenesis","type":"narrow"},{"name":"negative regulation of mesenchymal stem cell apoptotic process involved in nephron morphogenesis","type":"exact"}],"termid":"GO:0072040"}


id: PBO:0001709
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NuA4 histone acetyltransferase complex subunit Eaf6 (predicted)","termid":"PBO:0001709"}


id: PATO:0001959
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A structural quality inhering in a bearer by virtue of the bearer's in which bundles of aligned anatomical fibers have become separated.","definition_xrefs":["PATOC:mw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fasciculation","termid":"PATO:0002013"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defasciculated","termid":"PATO:0001959"}


id: MONDO:0000879
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Candidiasis of the skin manifested as eczema-like lesions of the interdigital spaces, perleche, or chronic paronychia. (Dorland, 27th ed)","definition_xrefs":["MESH:D002179"],"direct_ancestors":[{"relation_name":"is_a","term_name":"candidiasis","termid":"MONDO:0002026"},{"relation_name":"is_a","term_name":"tinea infection","termid":"MONDO:0005982"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"cutaneous candidiasis","secondary_identifiers":["DOID:0080161","UMLS:C0006846","MEDGEN:2427"],"synonyms":[{"name":"zone of skin candidiasis","type":"exact"}],"termid":"MONDO:0000879","xrefs":{"Monarch":{"xref_id":"0000879"}}}


id: GO:0097683
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The anterior most point of a dinoflagellate epicone.","definition_xrefs":["GOC:at","Wikipedia:Dinoflagellate#Morphology","PMID:7002229"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"dinoflagellate epicone","termid":"GO:0097613"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"dinoflagellate apex","synonyms":[{"name":"apex","type":"broad"}],"termid":"GO:0097683"}


id: PBO:0056114
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LYPLAL1 antisense RNA 1","termid":"PBO:0056114"}


id: PBO:0110470
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cilia and flagella associated protein 263","termid":"PBO:0110470"}


id: GO:0015876
data:
  {"annotated_genes":["SJAG_04325"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[59700],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035348"}]},"cv_name":"biological_process","definition":"The directed movement of acetyl-CoA into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Acetyl-CoA is a derivative of coenzyme A in which the sulfhydryl group is acetylated; it is a metabolite derived from several pathways (e.g. glycolysis, fatty acid oxidation, amino-acid catabolism) and is further metabolized by the tricarboxylic acid cycle. It is a key intermediate in lipid and terpenoid biosynthesis.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty-acyl-CoA transport","termid":"GO:0015916"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04325":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"acetyl-CoA transport","references_by_uniquename":{"GO_REF:0000002":null},"termid":"GO:0015876","terms_by_termid":{"GO:0035348":null}}


id: PBO:0070041
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1338, pseudogene","termid":"PBO:0070041"}


id: PBO:0002004
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RecQ mediated genome instability protein Rmi1 (predicted)","termid":"PBO:0002004"}


id: GO:0102208
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a 3-(all-trans-polyprenyl)benzene-1,2-diol + S-adenosyl-L-methionine = a 2-methoxy-6-(all-trans-polyprenyl)phenol + H+ + S-adenosyl-L-homocysteine.","definition_xrefs":["RHEA:31411","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0003824","GO:0016741"],"is_obsolete":false,"name":"2-polyprenyl-6-hydroxyphenol methylase activity","secondary_identifiers":["EC:2.1.1.222","MetaCyc:RXN-12160"],"termid":"GO:0102208"}


id: PBO:0091421
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial NTPase Obg family, human OLA1 ortholog, implicated in mitochondrial translation, ribosome assembly, or tRNA metabolism","termid":"PBO:0091421"}


id: PBO:0040322
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase F1 subunit epsilon pseudogene 1","termid":"PBO:0040322"}


id: GO:0033510
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving luteolin, 2-(3,4-dihydroxyphenyl)-5,7-dihydroxy-4H-chromen-4-one.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"flavone metabolic process","termid":"GO:0051552"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"luteolin metabolic process","synonyms":[{"name":"luteolin metabolism","type":"exact"}],"termid":"GO:0033510"}


id: PBO:0004784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycerol-3-phosphate dehydrogenase Gpd1","termid":"PBO:0004784"}


id: PBO:0049422
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GULP PTB domain containing engulfment adaptor 1","termid":"PBO:0049422"}


id: GO:0007555
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the regulated release of ecdysteroid from a cell.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of steroid hormone secretion","termid":"GO:2000831"},{"relation_name":"regulates","term_name":"ecdysteroid secretion","termid":"GO:0045457"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0023052","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of ecdysteroid secretion","termid":"GO:0007555"}


id: PBO:0047561
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibroblast growth factor 14","termid":"PBO:0047561"}


id: PBO:0075547
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPECC1 pseudogene 1","termid":"PBO:0075547"}


id: GO:0005755
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete hydrogen-transporting ATP synthase, coupling factor CF(0) (obsolete GO:0005755)","synonyms":[{"name":"hydrogen-transporting ATP synthase, coupling factor CF(0)","type":"exact"}],"termid":"GO:0005755"}


id: GO:0050150
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2,3-dihydroxybenzoate + H+ = catechol + CO2.","definition_xrefs":["EC:4.1.1.46","RHEA:21492"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"o-pyrocatechuate decarboxylase activity","secondary_identifiers":["GO:0018790","KEGG_REACTION:R00821","UM-BBD_reactionID:r0579","MetaCyc:O-PYROCATECHUATE-DECARBOXYLASE-RXN"],"synonyms":[{"name":"2,3-DHBA decarboxylase activity","type":"related"},{"name":"2,3-dihydroxybenzoate carboxy-lyase (catechol-forming)","type":"related"},{"name":"2,3-dihydroxybenzoate carboxy-lyase activity","type":"related"},{"name":"2,3-dihydroxybenzoate decarboxylase activity","type":"exact"},{"name":"2,3-dihydroxybenzoic acid decarboxylase activity","type":"related"}],"termid":"GO:0050150"}


id: PATO:0000844
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000844 auditory acuity (obsolete PATO:0000844)","termid":"PATO:0000844"}


id: PBO:0038859
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADAMTSL4 antisense RNA 2","termid":"PBO:0038859"}


id: PBO:0065522
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pentatricopeptide repeat domain 2 pseudogene 2","termid":"PBO:0065522"}


id: PBO:0042471
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell division cycle associated 8","termid":"PBO:0042471"}


id: PBO:0011062
data:
  {"annotation_feature_type":"gene","cv_name":"feature_relationshipprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"approver_email","termid":"PBO:0011062"}


id: GO:0002497
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The hydrolysis of a peptide bond or bonds within a protein by the proteasome complex contributing to antigen processing and presentation.","definition_xrefs":["PMID:15224092","ISBN:0781735149","GOC:add","PMID:15771591"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proteolysis associated with antigen processing and presentation","termid":"GO:0002496"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0030163"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0030163","GO:0008150"],"is_obsolete":false,"name":"proteasomal proteolysis associated with antigen processing and presentation","termid":"GO:0002497"}


id: PBO:0005587
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NatA N-acetyltransferase subunit Naa50 (predicted)","termid":"PBO:0005587"}


id: GO:1990448
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an exon-exon junction complex, a protein complex deposited by the spliceosome upstream of messenger RNA exon-exon junctions. The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay.","definition_xrefs":["GOC:sart","PMID:24967911"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex binding","termid":"GO:0044877"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"exon-exon junction complex binding","synonyms":[{"name":"EJC binding","type":"exact"}],"termid":"GO:1990448"}


id: PBO:0044539
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DAN domain BMP antagonist family member 5","termid":"PBO:0044539"}


id: PBO:0051955
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ITPR2 and SSPN antisense RNA 1","termid":"PBO:0051955"}


id: PBO:0088785
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acetyl-CoA biosynthesis protein","termid":"PBO:0088785"}


id: PBO:0005910
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TfdA family","termid":"PBO:0005910"}


id: GO:0010013
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to N-1-naphthylphthalamic acid, an auxin transport inhibitor.","definition_xrefs":["GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amide binding","termid":"GO:0033218"},{"relation_name":"is_a","term_name":"monocarboxylic acid binding","termid":"GO:0033293"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"N-1-naphthylphthalamic acid binding","termid":"GO:0010013"}


id: GO:1900864
data:
  {"annotated_genes":["SJAG_00186","SJAG_04113","SJAG_02302","SJAG_00865","SJAG_04700","SJAG_00358","SJAG_04367","SJAG_00255"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[78447],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070901"},{"annotations":[119019,75876],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0072670"},{"annotations":[94595,107246,117351],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990799"},{"annotations":[93126,76563],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070899"}]},"cv_name":"biological_process","definition":"Any RNA modification that takes place in mitochondrion.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial RNA metabolic process","termid":"GO:0000959"},{"relation_name":"is_a","term_name":"RNA modification","termid":"GO:0009451"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00186":null,"SJAG_00255":null,"SJAG_00358":null,"SJAG_00865":null,"SJAG_02302":null,"SJAG_04113":null,"SJAG_04367":null,"SJAG_04700":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mitochondrial RNA modification","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"mitochondrial RNA editing","type":"narrow"}],"termid":"GO:1900864","terms_by_termid":{"GO:0070899":null,"GO:0070901":null,"GO:0072670":null,"GO:1990799":null}}


id: MONDO:1011113
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Cryptorchidism that occurs in Arabian camel.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cryptorchidism, non-human animal","termid":"MONDO:1010275"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cryptorchidism, Arabian camel","secondary_identifiers":["OMIA:000243-9838"],"termid":"MONDO:1011113","xrefs":{"Monarch":{"xref_id":"1011113"}}}


id: FYPO:0005069
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which mitotic sister chromatid segregation fails to separate chromosomes into two equal masses after the cell has undergone a normal mitotic nuclear division and passed through the subsequent mitotic interphase. Unequal mitotic sister chromatid separation may be complete, with two distinct unequal DNA masses located at or near the ends of an elongated mitotic spindle, or incomplete.","definition_xrefs":["PMID:18180284","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"unequal mitotic sister chromatid segregation","termid":"FYPO:0003241"},{"relation_name":"is_a","term_name":"abnormal mitosis following normal mitosis","termid":"FYPO:0004588"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0000337"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0001320","FYPO:0000337","FYPO:0000641","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"unequal mitotic sister chromatid segregation following normal mitosis","synonyms":[{"name":"mitotic chromosome nondisjunction following normal mitosis","type":"exact"},{"name":"unequal mitotic chromosome segregation following normal mitosis","type":"exact"},{"name":"unequal mitotic sister chromatid segregation during vegetative growth following normal mitosis","type":"exact"},{"name":"unequal mitotic sister chromatid separation following normal mitosis","type":"related"},{"name":"unequal sister chromatid segregation following normal mitosis during mitotic cell cycle","type":"related"}],"termid":"FYPO:0005069"}


id: PBO:0087142
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding protein that modulates mRNA stability; regulates genes involved in cell cycle, sister chromatid cohesion, and stress response; modulates stability and translational efficiency of CLN3 mRNA; colocalizes with P-bodies/stress granules where it may sequester specific mRNAs; regulates cell fate and critical cell size required for passage through Start; regulates ploidy; forms aggregates in older cells, leading to sterility","termid":"PBO:0087142"}


id: PBO:0061981
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily AT member 2 pseudogene","termid":"PBO:0061981"}


id: MONDO:0009585
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited neurodegenerative disorder","termid":"MONDO:0024237"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"encephalopathy due to beta-mercaptolactate-cysteine disulfiduria","secondary_identifiers":["UMLS:C0796055","OMIM:249650","Orphanet:1035","MEDGEN:208661","GARD:654","MESH:C563085"],"synonyms":[{"name":"3-mercaptopyruvate sulfurtransferase deficiency","type":"exact"},{"name":"Ampola syndrome","type":"exact"},{"name":"Beta-mercaptolactate cysteine disulfiduria","type":"related"},{"name":"MCDU","type":"related"},{"name":"disulfiduria, mixed","type":"related"},{"name":"mercaptolactate-cysteine disulfiduria","type":"related"}],"termid":"MONDO:0009585","xrefs":{"Monarch":{"xref_id":"0009585"}}}


id: GO:0044191
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Either of the lipid bilayers that surround the host cell mitochondrion and form the host cell mitochondrial envelope.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell membrane","termid":"GO:0033644"},{"relation_name":"part_of","term_name":"host cell mitochondrial envelope","termid":"GO:0044190"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell mitochondrial membrane","termid":"GO:0044191"}


id: MONDO:0021582
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A flat, benign, pigmented spot on the skin caused by excessive deposition of melanin from an increased number of melanocytes in the cell layer directly above the basement membrane of the epidermis. Formation is usually related to sun exposure during youth, and the lesions do not typically progress to malignancy.","definition_xrefs":["NCIT:C3159"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"benign neoplasm","termid":"MONDO:0005165"},{"relation_name":"is_a","term_name":"hereditary skin disorder","termid":"MONDO:0100118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"lentigo","secondary_identifiers":["UMLS:C0023321","MEDGEN:7301","SCTID:402624000","MESH:D007911","OMIM:150900"],"synonyms":[{"name":"lentigines","type":"exact"},{"name":"lentiginosis","type":"exact"},{"name":"lentigo","type":"exact"}],"termid":"MONDO:0021582","xrefs":{"Monarch":{"xref_id":"0021582"}}}


id: GO:0046620
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of growth of an organ of an organism.","definition_xrefs":["GOC:tb","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of developmental growth","termid":"GO:0048638"},{"relation_name":"is_a","term_name":"regulation of multicellular organismal process","termid":"GO:0051239"},{"relation_name":"regulates","term_name":"organ growth","termid":"GO:0035265"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of organ growth","termid":"GO:0046620"}


id: GO:0051777
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction:ent-kaur-16-en-19-oate + 3 O2 + 3 reduced [NADPH--hemoprotein reductase] = gibberellin A12 + 4 H+ + 4 H2O + 3 oxidized [NADPH--hemoprotein reductase]. Catalyzes three successive oxidations of ent-kaurenoic acid.","definition_xrefs":["RHEA:33219"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen","termid":"GO:0016712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"ent-kaurenoic acid monooxygenase activity","secondary_identifiers":["EC:1.14.14.107"],"synonyms":[{"name":"ent-kaurenoate oxidase activity","type":"related"},{"name":"ent-kaurenoic acid oxidase activity","type":"related"}],"termid":"GO:0051777"}


id: MONDO:0000113
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete cerebellar ataxia, mental retardation, and dysequilibrium syndrome (obsolete MONDO:0000113)","termid":"MONDO:0000113","xrefs":{"Monarch":{"xref_id":"0000113"}}}


id: MONDO:0010855
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Short tarsus - absence of lower eyelashes is a very rare syndrome characterized by the association of thin and short upper and lower tarsus and absence of the lower eyelashes.","definition_xrefs":["Orphanet:2832"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome without intellectual disability","termid":"MONDO:0015161"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"short tarsus-absence of lower eyelashes syndrome","secondary_identifiers":["GARD:296","MEDGEN:325001","OMIM:600269","MESH:C537036","UMLS:C1838328","SCTID:721075001"],"synonyms":[{"name":"Lopes Gorlin syndrome","type":"related"},{"name":"Lopes-Gorlin syndrome","type":"exact"},{"name":"short tarsus absence of lower eyelashes","type":"related"},{"name":"short tarsus with absence of LOWER eyelashes","type":"related"},{"name":"stale","type":"related"}],"termid":"MONDO:0010855","xrefs":{"Monarch":{"xref_id":"0010855"}}}


id: MONDO:0017945
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hereditary cerebral hemorrhage with amyloidosis (HCHWA), Piedmont type is a form of HCHWA characterized by an age of onset between 50-70 years of age, recurrent lobar intracerebral hemorrhages and cognitive decline.","definition_xrefs":["Orphanet:324703"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cerebral amyloid angiopathy, APP-related","termid":"MONDO:0011583"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0021179"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0021179"],"is_obsolete":false,"name":"ABetaL34V amyloidosis","secondary_identifiers":["UMLS:C5679882","ICD10EXP:E85.4+","MEDGEN:1842835","GARD:17489","ICD10EXP:I68.0*"],"synonyms":[{"name":"ABeta amyloidosis, Piedmont type","type":"exact"},{"name":"ABetaL34V-related amyloidosis","type":"exact"},{"name":"HCHWA, Piedmont type","type":"exact"},{"name":"hereditary cerebral haemorrhage with amyloidosis, Piedmont type","type":"exact"},{"name":"hereditary cerebral hemorrhage with amyloidosis, Piedmont type","type":"exact"}],"termid":"MONDO:0017945","xrefs":{"Monarch":{"xref_id":"0017945"}}}


id: PBO:0078968
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ser (anticodon AGA) 7-1","termid":"PBO:0078968"}


id: MONDO:0015608
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Acute myeloid leukemia and myelodysplastic syndromes related to radiation represent a subgroup of therapy-related myeloid neoplasms (t-MN), associated with treatment of an unrelated neoplastic disease with radiation. The neoplastic cells typically harbor unbalanced aberrations of chromosomes 5 and 7 (monosomy 5/del(5q) and monosomy 7/del(7q)) or a complex karyotype. Patients frequently present with multilineage dysplasia and cytopenias 5-10 years after exposure.","definition_xrefs":["Orphanet:164726"],"direct_ancestors":[{"relation_name":"is_a","term_name":"therapy related acute myeloid leukemia and myelodysplastic syndrome","termid":"MONDO:0019457"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0004992","MONDO:0005046"],"is_obsolete":false,"name":"acute myeloid leukemia and myelodysplastic syndromes related to radiation","secondary_identifiers":["MEDGEN:1637827","UMLS:C4707660","GARD:20057"],"synonyms":[{"name":"AML and myelodysplastic syndromes related to radiation","type":"exact"}],"termid":"MONDO:0015608","xrefs":{"Monarch":{"xref_id":"0015608"}}}


id: GO:0102561
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: alpha-D-ribose 1,2-cyclic phosphate 5-phosphate + H2O = D-ribose 2,5-bisphosphate + H+.","definition_xrefs":["EC:3.1.4.57"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphoric diester hydrolase activity","termid":"GO:0008081"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016788","GO:0003824","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"phosphoribosyl 1,2-cyclic phosphate 1,2-diphosphodiesterase activity","secondary_identifiers":["MetaCyc:RXN-14996"],"synonyms":[{"name":"D-ribose 2,5-bisphosphate 2-phosphohydrolase activity","type":"related"},{"name":"cyclic phosphate dihydrolase activity","type":"related"}],"termid":"GO:0102561"}


id: MONDO:0044986
data:
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id: MONDO:0010641
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare renal disease characterized by the association of X-linked Alport syndrome (glomerular nephropathy, sensorineural deafness and ocular anomalies) and benign proliferation of visceral smooth muscle cells along the gastrointestinal, respiratory, and female genital tracts and clinically manifests with dysphagia, dyspnea, cough, stridor, postprandial vomiting, retrosternal or epigastric pain, recurrent pneumonia, and clitoral hypertrophy in females.","definition_xrefs":["Orphanet:1018"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kidney disorder","termid":"MONDO:0005240"},{"relation_name":"is_a","term_name":"partial deletion of the long arm of chromosome X","termid":"MONDO:0017007"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"X-linked diffuse leiomyomatosis-Alport syndrome","secondary_identifiers":["OMIM:308940","UMLS:C1839884","MESH:C537113","GARD:2432","MEDGEN:333429"],"synonyms":[{"name":"ATS-DL","type":"related"},{"name":"Alport syndrome and diffuse leiomyomatosis","type":"related"},{"name":"Alport syndrome with diffuse leiomyomatosis","type":"related"},{"name":"DL-ATS","type":"related"},{"name":"Xq22.3 microdeletion syndrome","type":"exact"},{"name":"chromosome Xq22.3 centromeric deletion syndrome","type":"related"},{"name":"diffuse leiomyomatosis in Alport syndrome","type":"related"},{"name":"leiomyomatosis, diffuse, with Alport syndrome","type":"related"},{"name":"leiomyomatosis, esophageal and vulval, with nephropathy","type":"related"}],"termid":"MONDO:0010641","xrefs":{"Monarch":{"xref_id":"0010641"}}}


id: MONDO:0009672
data:
  {"annotated_genes":["SJAG_03894"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86381],"is_not":false,"summary":null,"term":"MONDO:0009672"}]},"cv_name":"mondo","definition":"Proximal spinal muscular atrophy type 3 (SMA3) is a relatively mild form of proximal spinal muscular atrophy characterized by muscle weakness and hypotonia resulting from the degeneration and loss of the lower motor neurons in the spinal cord and the brain stem nuclei.","definition_xrefs":["Orphanet:83419"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proximal spinal muscular atrophy","termid":"MONDO:0019079"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03894":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0005244"],"is_obsolete":false,"name":"spinal muscular atrophy, type III","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C0152109","NANDO:1200006","SCTID:54280009","NCIT:C118847","OMIM:253400","MEDGEN:101816","ICD9:335.11","GARD:198","DOID:12376","icd11.foundation:677572815"],"synonyms":[{"name":"KWS","type":"related"},{"name":"Kugelberg Welander Syndrome","type":"exact"},{"name":"Kugelberg-Welander disease","type":"exact"},{"name":"Kugelberg-Welander syndrome","type":"related"},{"name":"SMA 3","type":"related"},{"name":"SMA type 3","type":"exact"},{"name":"SMA type III","type":"exact"},{"name":"SMA-III","type":"exact"},{"name":"SMA3","type":"exact"},{"name":"Sma 3","type":"related"},{"name":"childhood spinal muscular atrophy","type":"broad"},{"name":"juvenile spinal muscular atrophy","type":"broad"},{"name":"muscular atrophy, juvenile","type":"related"},{"name":"paediatric spinal muscular atrophy","type":"related"},{"name":"pediatric spinal muscular atrophy","type":"related"},{"name":"proximal spinal muscular atrophy type 3","type":"related"},{"name":"spinal muscular atrophy III","type":"exact"},{"name":"spinal muscular atrophy of childhood","type":"related"},{"name":"spinal muscular atrophy type 3","type":"exact"},{"name":"spinal muscular atrophy, familial","type":"exact"},{"name":"spinal muscular atrophy, mild childhood and adolescent form","type":"related"},{"name":"spinal muscular atrophy, type 3","type":"related"},{"name":"spinal muscular atrophy, type III","type":"exact"},{"name":"spinal muscular atrophy, type III, modifier of","type":"exact"},{"name":"spinal muscular atrophy-3","type":"exact"},{"name":"type III spinal muscular atrophy","type":"exact"}],"termid":"MONDO:0009672","terms_by_termid":{"MONDO:0009672":null},"xrefs":{"Monarch":{"xref_id":"0009672"}}}


id: MOD:00552
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts a residue containing common isotopes to a 4x(2)H labeled dimethylated residue.","definition_xrefs":["PubMed:14670044","Unimod:199"],"direct_ancestors":[{"relation_name":"is_a","term_name":"(2)H deuterium labeled residue","termid":"MOD:00839"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"4x(2)H labeled dimethylated residue","synonyms":[{"name":"DiMethyl-CHD2","type":"related"},{"name":"Dimethyl:2H(4)","type":"related"}],"termid":"MOD:00552"}


id: GO:1902326
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of chlorophyll biosynthetic process.","definition_xrefs":["GOC:TermGenie","PMID:23555952"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of chlorophyll biosynthetic process","termid":"GO:0010380"},{"relation_name":"is_a","term_name":"positive regulation of tetrapyrrole biosynthetic process","termid":"GO:1901465"},{"relation_name":"positively_regulates","term_name":"chlorophyll biosynthetic process","termid":"GO:0015995"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0033013"},{"rel_name":"positively_regulates","termid":"GO:0033013"}],"interesting_parent_ids":["GO:0033013","GO:0008150"],"is_obsolete":false,"name":"positive regulation of chlorophyll biosynthetic process","synonyms":[{"name":"activation of chlorophyll anabolism","type":"narrow"},{"name":"activation of chlorophyll biosynthesis","type":"narrow"},{"name":"activation of chlorophyll biosynthetic process","type":"narrow"},{"name":"activation of chlorophyll formation","type":"narrow"},{"name":"activation of chlorophyll synthesis","type":"narrow"},{"name":"positive regulation of chlorophyll anabolism","type":"exact"},{"name":"positive regulation of chlorophyll biosynthesis","type":"exact"},{"name":"positive regulation of chlorophyll formation","type":"exact"},{"name":"positive regulation of chlorophyll synthesis","type":"exact"},{"name":"up regulation of chlorophyll anabolism","type":"exact"},{"name":"up regulation of chlorophyll biosynthesis","type":"exact"},{"name":"up regulation of chlorophyll biosynthetic process","type":"exact"},{"name":"up regulation of chlorophyll formation","type":"exact"},{"name":"up regulation of chlorophyll synthesis","type":"exact"},{"name":"up-regulation of chlorophyll anabolism","type":"exact"},{"name":"up-regulation of chlorophyll biosynthesis","type":"exact"},{"name":"up-regulation of chlorophyll biosynthetic process","type":"exact"},{"name":"up-regulation of chlorophyll formation","type":"exact"},{"name":"up-regulation of chlorophyll synthesis","type":"exact"},{"name":"upregulation of chlorophyll anabolism","type":"exact"},{"name":"upregulation of chlorophyll biosynthesis","type":"exact"},{"name":"upregulation of chlorophyll biosynthetic process","type":"exact"},{"name":"upregulation of chlorophyll formation","type":"exact"},{"name":"upregulation of chlorophyll synthesis","type":"exact"}],"termid":"GO:1902326"}


id: FYPO:0003855
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide). Cells stop growing (and may die) at a concentration of MTT that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0001985","FYPO:0000003","FYPO:0005447","FYPO:0002683"],"is_obsolete":false,"name":"sensitive to MTT","synonyms":[{"name":"hypersensitive to MTT","type":"exact"},{"name":"sensitive to 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide","type":"exact"},{"name":"sensitive to MTT during mitotic cell cycle","type":"related"},{"name":"sensitive to MTT during vegetative growth","type":"exact"}],"termid":"FYPO:0003855"}


id: MONDO:0007009
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The presence of a calculus in the ureter of the kidney; this is most often composed of mineral salts and proteins.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ureteral disorder","termid":"MONDO:0001926"},{"relation_name":"is_a","term_name":"urinary bladder disorder","termid":"MONDO:0006026"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ureterolithiasis","secondary_identifiers":["NCIT:C114696","SCTID:31054009","ICD9:592.1","UMLS:C0041952","MEDGEN:21775","EFO:1001228","MESH:D053039","DOID:14146"],"synonyms":[{"name":"calculus of ureter","type":"exact"},{"name":"ureteric calculus","type":"exact"},{"name":"ureteric stone","type":"exact"}],"termid":"MONDO:0007009","xrefs":{"Monarch":{"xref_id":"0007009"}}}


id: GO:0099612
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to or maintained in a location within an axon.","definition_xrefs":["GOC:dos","PMID:26157139"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization","termid":"GO:0008104"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"protein localization to axon","termid":"GO:0099612"}


id: PBO:0049071
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor 88","termid":"PBO:0049071"}


id: PBO:0000991
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retrotransposable element","termid":"PBO:0000991"}


id: MONDO:0005516
data:
  {"annotated_genes":["SJAG_03423","SJAG_00222","SJAG_01941","SJAG_02246","SJAG_01942","SJAG_00602","SJAG_00690","SJAG_00984","SJAG_00516","SJAG_02349","SJAG_04285","SJAG_00084","SJAG_04528","SJAG_01005","SJAG_02418","SJAG_04956","SJAG_03864","SJAG_03475","SJAG_00851","SJAG_04934","SJAG_00288","SJAG_01615","SJAG_04582","SJAG_04369","SJAG_02463","SJAG_02413","SJAG_03467","SJAG_02016","SJAG_04096","SJAG_01608","SJAG_00120","SJAG_00183","SJAG_00339"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86265],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008701"},{"annotations":[85536,85535],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010966"},{"annotations":[87216],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0054561"},{"annotations":[87072,87071],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009727"},{"annotations":[87410],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0018163"},{"annotations":[85499],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013051"},{"annotations":[87193],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014455"},{"annotations":[87334],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010879"},{"annotations":[87035],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007204"},{"annotations":[85777],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014573"},{"annotations":[87126,87125],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009107"},{"annotations":[87395],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012873"},{"annotations":[86129],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014801"},{"annotations":[85787],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009598"},{"annotations":[87581],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008872"},{"annotations":[86086,86085],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009189"},{"annotations":[86834],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012592"},{"annotations":[86599],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009805"},{"annotations":[86040],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030861"},{"annotations":[87237],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010013"},{"annotations":[86469],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013889"},{"annotations":[87070],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010075"},{"annotations":[86467],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032724"},{"annotations":[86012],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011335"},{"annotations":[86902],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010275"},{"annotations":[86415],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0958006"},{"annotations":[87133,87134],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032885"},{"annotations":[85645,85646],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0019666"},{"annotations":[86752],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010737"},{"annotations":[86486],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013870"},{"annotations":[86496],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009910"},{"annotations":[86026,86027],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009192"},{"annotations":[85937],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010208"}]},"cv_name":"mondo","definition":"A term referring to disorders characterized by abnormalities in the development of bones and cartilage.","definition_xrefs":["NCIT:C84978"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bone development disease","termid":"MONDO:0005497"},{"relation_name":"is_a","term_name":"skeletal 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dysplasia","type":"broad"}],"termid":"MONDO:0005516","terms_by_termid":{"MONDO:0007204":null,"MONDO:0008701":null,"MONDO:0008872":null,"MONDO:0009107":null,"MONDO:0009189":null,"MONDO:0009192":null,"MONDO:0009598":null,"MONDO:0009727":null,"MONDO:0009805":null,"MONDO:0009910":null,"MONDO:0010013":null,"MONDO:0010075":null,"MONDO:0010208":null,"MONDO:0010275":null,"MONDO:0010737":null,"MONDO:0010879":null,"MONDO:0010966":null,"MONDO:0011335":null,"MONDO:0012592":null,"MONDO:0012873":null,"MONDO:0013051":null,"MONDO:0013870":null,"MONDO:0013889":null,"MONDO:0014455":null,"MONDO:0014573":null,"MONDO:0014801":null,"MONDO:0018163":null,"MONDO:0019666":null,"MONDO:0030861":null,"MONDO:0032724":null,"MONDO:0032885":null,"MONDO:0054561":null,"MONDO:0958006":null},"xrefs":{"Monarch":{"xref_id":"0005516"}}}


id: MONDO:0010032
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sjogren-Larsson-like ichthyosis without CNS or eye involvement","secondary_identifiers":["MESH:C536668","OMIM:270220","UMLS:C1849195","MEDGEN:336532"],"synonyms":[{"name":"Sjogren-Larsson-like ichthyosis without CNS or eye involvement","type":"exact"},{"name":"Sjogren-Larsson-like syndrome","type":"related"},{"name":"ichthyosis, Sjogren-Larsson-like, without CNS or eye involvement","type":"related"}],"termid":"MONDO:0010032","xrefs":{"Monarch":{"xref_id":"0010032"}}}


id: GO:0050973
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events involved in equilibrioception in which a mechanical stimulus is received and converted into a molecular signal. During equilibrioception, mechanical stimuli may be in the form of input from pressure receptors or from the labyrinth system of the inner ears.","definition_xrefs":["GOC:ai","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detection of mechanical stimulus involved in sensory perception","termid":"GO:0050974"},{"relation_name":"part_of","term_name":"equilibrioception","termid":"GO:0050957"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of mechanical stimulus involved in equilibrioception","synonyms":[{"name":"equilibrioception, detection of mechanical stimulus","type":"exact"},{"name":"equilibrioception, sensory detection of mechanical stimulus","type":"exact"},{"name":"equilibrioception, sensory transduction of mechanical stimulus","type":"exact"},{"name":"sensory detection of mechanical stimulus during equilibrioception","type":"exact"},{"name":"sensory transduction of mechanical stimulus during equilibrioception","type":"exact"}],"termid":"GO:0050973"}


id: PBO:0043855
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CRACD like","termid":"PBO:0043855"}


id: GO:0042128
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The nitrogen metabolic process that encompasses the uptake of nitrate from the environment and reduction to ammonia, and results in the incorporation of nitrogen derived from nitrate into cellular substances.","definition_xrefs":["GOC:mah","PMID:10542156","PMID:8122899","GOC:das"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nitrate metabolic process","termid":"GO:0042126"},{"relation_name":"is_a","term_name":"nitrogen cycle metabolic process","termid":"GO:0071941"},{"relation_name":"is_a","term_name":"ammonium ion metabolic process","termid":"GO:0097164"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0071941"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0071941"],"is_obsolete":false,"name":"nitrate assimilation","secondary_identifiers":["MetaCyc:PWY-381"],"synonyms":[{"name":"assimilatory nitrate reduction","type":"narrow"}],"termid":"GO:0042128"}


id: MONDO:0005824
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A pneumonia caused by Legionella pneumophila and other Legionella species, which is characterized by fever, cough, progressive respiratory distress, and which is often accompanied by extrapulmonary manifestations.","definition_xrefs":["NCIT:C128339"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bacterial pneumonia","termid":"MONDO:0004652"},{"relation_name":"is_a","term_name":"legionellosis","termid":"MONDO:0005823"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Legionnaires' disease","secondary_identifiers":["UMLS:C0023241","EFO:0007343","ICD9:482.84","MEDGEN:9705","MESH:D007877","DOID:10457","SCTID:195889001"],"synonyms":[{"name":"Legionella","type":"exact"},{"name":"Legionella pneumonia","type":"exact"},{"name":"Legionnaires' Disease","type":"exact"},{"name":"infection by Legionella pneumophilia","type":"exact"},{"name":"legionnaire's disease","type":"exact"}],"termid":"MONDO:0005824","xrefs":{"Monarch":{"xref_id":"0005824"}}}


id: MONDO:0012938
data:
  {"annotated_genes":["SJAG_02280","SJAG_00465"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87100,87101],"is_not":false,"summary":null,"term":"MONDO:0012938"}]},"cv_name":"mondo","definition":"Any Diamond-Blackfan anemia in which the cause of the disease is a mutation in the RPL11 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Diamond-Blackfan anemia","termid":"MONDO:0015253"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00465":null,"SJAG_02280":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002280"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0002280"],"is_obsolete":false,"name":"Diamond-Blackfan anemia 7","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C2675512","MESH:C567254","GARD:15569","MEDGEN:436451","NCIT:C176916","DOID:0111878","OMIM:612562"],"synonyms":[{"name":"DBA7","type":"related"},{"name":"Diamond-Blackfan Anaemia type 7","type":"exact"},{"name":"Diamond-Blackfan Anemia type 7","type":"exact"},{"name":"Diamond-Blackfan anaemia caused by mutation in RPL11","type":"exact"},{"name":"Diamond-Blackfan anemia 7","type":"exact"},{"name":"Diamond-Blackfan anemia caused by mutation in RPL11","type":"exact"},{"name":"RPL11 Diamond-Blackfan anaemia","type":"exact"},{"name":"RPL11 Diamond-Blackfan anemia","type":"exact"}],"termid":"MONDO:0012938","terms_by_termid":{"MONDO:0012938":null},"xrefs":{"Monarch":{"xref_id":"0012938"}}}


id: MONDO:0006094
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A primitive neuroectodermal tumor (small round blue cell tumor) of the thorax which can involve the periosteum, thoracic wall and/or pleura though it spares the lung parenchyma.","definition_xrefs":["NCIT:C7542"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thoracic cancer","termid":"MONDO:0003274"},{"relation_name":"is_a","term_name":"peripheral primitive neuroectodermal tumor","termid":"MONDO:0018271"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"Askin tumor","secondary_identifiers":["DOID:0050608","UMLS:C0877849","ICDO:9365/3","MEDGEN:209112","EFO:1000095","MESH:C563168"],"synonyms":[{"name":"Askin tumor","type":"exact"},{"name":"Askin's tumor","type":"exact"},{"name":"Askin's tumour","type":"exact"},{"name":"PNET of thoracopulmonary region","type":"exact"},{"name":"peripheral neuroectodermal tumor of thoracopulmonary region","type":"exact"},{"name":"peripheral neuroectodermal tumour of thoracopulmonary region","type":"exact"},{"name":"small cell tumor of thoracopulmonary region","type":"exact"},{"name":"small cell tumour of thoracopulmonary region","type":"exact"}],"termid":"MONDO:0006094","xrefs":{"Monarch":{"xref_id":"0006094"}}}


id: PBO:0002317
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"previusly annotated as dubious","termid":"PBO:0002317"}


id: PBO:0083139
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data","termid":"PBO:0083139"}


id: PBO:0039734
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"APOC4-APOC2 readthrough (NMD candidate)","termid":"PBO:0039734"}


id: PBO:0003099
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-like protein modifier Hub1","termid":"PBO:0003099"}


id: GO:0140669
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the rate of production of oxytocin.","definition_xrefs":["PMID:25096581"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of gene expression","termid":"GO:0010629"},{"relation_name":"is_a","term_name":"regulation of oxytocin production","termid":"GO:0140667"},{"relation_name":"negatively_regulates","term_name":"oxytocin production","termid":"GO:0036162"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"negative regulation of oxytocin production","termid":"GO:0140669"}


id: FYPO:0008193
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to pericentric heterochromatin is normal during prophase of the first meiotic nuclear division.","direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization during meiosis","termid":"FYPO:0003790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal protein localization to pericentric heterochromatin during meiotic prophase I","termid":"FYPO:0008193"}


id: PBO:0074878
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 58C","termid":"PBO:0074878"}


id: PBO:0031063
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination_with_elongated_germ_tube","termid":"PBO:0031063"}


id: GO:0033828
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: sn-glycerol 3-phosphate + ADP-glucose = 2-O-(beta-D-glucosyl)-sn-glycerol 3-phosphate + ADP + H+.","definition_xrefs":["EC:2.4.1.213","RHEA:12881"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucosyltransferase activity","termid":"GO:0046527"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016757","GO:0016740"],"is_obsolete":false,"name":"glucosylglycerol-phosphate synthase activity","secondary_identifiers":["KEGG_REACTION:R05328","MetaCyc:2.4.1.213-RXN"],"synonyms":[{"name":"ADP-glucose:sn-glycerol-3-phosphate 2-beta-D-glucosyltransferase activity","type":"related"},{"name":"ADPglucose:sn-glycerol-3-phosphate 2-beta-D-glucosyltransferase activity","type":"related"},{"name":"GG-phosphate synthase activity","type":"related"},{"name":"GGPS","type":"related"},{"name":"glucosyl-glycerol-phosphate synthase activity","type":"related"}],"termid":"GO:0033828"}


id: PBO:0017788
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fizzy-related CDK inhibitor Srw1","termid":"PBO:0017788"}


id: GO:1905251
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any epidermal growth factor receptor signaling pathway that is involved in heart process.","definition_xrefs":["PMID:23069713","GO_REF:0000060","GOC:bc","GOC:BHF","GOC:BHF_miRNA","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epidermal growth factor receptor signaling pathway","termid":"GO:0007173"},{"relation_name":"part_of","term_name":"heart process","termid":"GO:0003015"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"epidermal growth factor receptor signaling pathway involved in heart process","synonyms":[{"name":"EGF receptor signaling pathway involved in cardiac process","type":"related"},{"name":"EGF receptor signaling pathway involved in heart process","type":"exact"},{"name":"EGF receptor signalling pathway involved in cardiac process","type":"related"},{"name":"EGF receptor signalling pathway involved in heart process","type":"exact"},{"name":"EGFR signaling pathway involved in cardiac process","type":"related"},{"name":"EGFR signaling pathway involved in heart process","type":"exact"},{"name":"ERBB1 signaling pathway involved in cardiac process","type":"related"},{"name":"ERBB1 signaling pathway involved in heart process","type":"exact"},{"name":"epidermal growth factor receptor signaling pathway involved in cardiac process","type":"related"},{"name":"epidermal growth factor receptor signalling pathway involved in cardiac process","type":"related"},{"name":"epidermal growth factor receptor signalling pathway involved in heart process","type":"exact"},{"name":"receptor tyrosine-protein kinase erbB-1 signaling pathway involved in cardiac process","type":"related"},{"name":"receptor tyrosine-protein kinase erbB-1 signaling pathway involved in heart process","type":"exact"}],"termid":"GO:1905251"}


id: GO:0005686
data:
  {"annotated_genes":["SJAG_00498","SJAG_03245","SJAG_01327","SJAG_04318","SJAG_00504","SJAG_01870","SJAG_02279","SJAG_01819","SJAG_03460","SJAG_05208","SJAG_03210","SJAG_03070","SJAG_00322","SJAG_00577","SJAG_01452","SJAG_05240","SJAG_00539","SJAG_02843","SJAG_01008","SJAG_00147","SJAG_04079","SJAG_02185","SJAG_03995","SJAG_02469","SJAG_03547","SJAG_03954","SJAG_02304","SJAG_00313","SJAG_01301","SJAG_03469"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[70790,70853,72492,73078,73552,74260,74452,75735,76036,76220,76328,77050,77443,77723,78076,79659,80467,96153,102753,103546,106707,108249,108900,109871,110436,113038,113265,115321,116254,116788],"is_not":false,"summary":null,"term":"GO:0005686"}]},"cv_name":"cellular_component","definition":"A ribonucleoprotein complex that contains small nuclear RNA U2, a heptameric ring of Sm proteins, as well as several proteins that are unique to the U2 snRNP, most of which remain associated with the U2 snRNA both while the U2 snRNP is free or assembled into a series of spliceosomal complexes.","definition_xrefs":["GOC:mah","GOC:krc","ISBN:0879695897"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spliceosomal snRNP complex","termid":"GO:0097525"}],"gene_count":30,"genes_by_uniquename":{"SJAG_00147":null,"SJAG_00313":null,"SJAG_00322":null,"SJAG_00498":null,"SJAG_00504":null,"SJAG_00539":null,"SJAG_00577":null,"SJAG_01008":null,"SJAG_01301":null,"SJAG_01327":null,"SJAG_01452":null,"SJAG_01819":null,"SJAG_01870":null,"SJAG_02185":null,"SJAG_02279":null,"SJAG_02304":null,"SJAG_02469":null,"SJAG_02843":null,"SJAG_03070":null,"SJAG_03210":null,"SJAG_03245":null,"SJAG_03460":null,"SJAG_03469":null,"SJAG_03547":null,"SJAG_03954":null,"SJAG_03995":null,"SJAG_04079":null,"SJAG_04318":null,"SJAG_05208":null,"SJAG_05240":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005634"],"is_obsolete":false,"name":"U2 snRNP","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"17S U2 snRNP","type":"narrow"},{"name":"snRNP U2","type":"exact"}],"termid":"GO:0005686","terms_by_termid":{"GO:0005686":null}}


id: MONDO:0008952
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete cerebrofaciothoracic dysplasia (obsolete MONDO:0008952)","termid":"MONDO:0008952","xrefs":{"Monarch":{"xref_id":"0008952"}}}


id: MOD:00005
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-threonine residue to O3-glycosylthreonine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-glycosylated residue","termid":"MOD:00396"},{"relation_name":"is_a","term_name":"modified L-threonine residue","termid":"MOD:00917"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"O-glycosyl-L-threonine","synonyms":[{"name":"OGlycoThr","type":"exact"}],"termid":"MOD:00005"}


id: PBO:0057112
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 200a","termid":"PBO:0057112"}


id: MONDO:0008080
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"schwannomatosis","termid":"MONDO:0008075"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0000426"],"is_obsolete":false,"name":"neurofibromatosis, type III, mixed central and peripheral","secondary_identifiers":["OMIM:162260","MESH:C537389","GARD:15094","SCTID:254240003","UMLS:C2931480","MEDGEN:419422"],"synonyms":[{"name":"NF3A","type":"related"},{"name":"Nf 3","type":"related"},{"name":"neurofibromas, palmar cutaneous","type":"related"},{"name":"neurofibromatosis, type III, Riccardi type","type":"related"},{"name":"neurofibromatosis, type III, mixed central and peripheral","type":"exact"},{"name":"neurofibromatosis, type III, of Riccardi","type":"related"}],"termid":"MONDO:0008080","xrefs":{"Monarch":{"xref_id":"0008080"}}}


id: PR:O94634
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A threonine dehydratase biosynthetic that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03919","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"threonine dehydratase, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1677.03c","secondary_identifiers":["UniProtKB:O94634"],"synonyms":[{"name":"Spom972h-ilvA","type":"exact"},{"name":"threonine deaminase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94634"}


id: PBO:0001723
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin Nup132","termid":"PBO:0001723"}


id: MONDO:0010305
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"X-linked creatine transporter deficiency (CRTR-D) is a creatine deficiency syndrome characterized clinically by global developmental delay/ intellectual disability (DD/ID) with prominent speech/language delay, autistic behavior and seizures.","definition_xrefs":["Orphanet:52503"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cerebral creatine deficiency syndrome","termid":"MONDO:0000456"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"},{"relation_name":"is_a","term_name":"developmental anomaly of metabolic origin","termid":"MONDO:0015327"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004736"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004736"],"is_obsolete":false,"name":"creatine transporter deficiency","secondary_identifiers":["NCIT:C125665","NANDO:1201035","GARD:1608","DOID:0050800","MEDGEN:337451","MESH:C535598","NANDO:2201301","OMIM:300352","SCTID:698290008","ICD9:758.81","UMLS:C1845862"],"synonyms":[{"name":"CCDS1","type":"related"},{"name":"SLC6A8 deficiency","type":"exact"},{"name":"X-linked creatine deficiency","type":"related"},{"name":"X-linked creatine deficiency syndrome","type":"related"},{"name":"X-linked creatine transporter deficiency","type":"related"},{"name":"cerebral creatine deficiency syndrome 1","type":"exact"},{"name":"cerebral creatine deficiency syndrome 1, X-linked recessive","type":"exact"},{"name":"cerebral creatine deficiency syndrome type 1","type":"exact"},{"name":"creatine deficiency syndrome, X-linked","type":"related"},{"name":"creatine deficiency, X-linked","type":"related"},{"name":"creatine transporter defect","type":"related"},{"name":"creatine transporter deficiency","type":"exact"},{"name":"intellectual disability, X-linked with seizures, short stature and midface hypoplasia","type":"related"},{"name":"intellectual disability, X-linked, with creatine Transport deficiency","type":"related"},{"name":"intellectual disability, X-linked, with creatine transport deficiency","type":"related"},{"name":"intellectual disability, X-linked, with seizures, short stature, and midface hypoplasia","type":"related"},{"name":"mental retardation, X-linked with seizures, short stature and midface hypoplasia","type":"related"},{"name":"mental retardation, X-linked, with creatine Transport deficiency","type":"related"},{"name":"mental retardation, X-linked, with creatine transport deficiency","type":"related"},{"name":"mental retardation, X-linked, with seizures, short stature, and midface hypoplasia","type":"related"}],"termid":"MONDO:0010305","xrefs":{"Monarch":{"xref_id":"0010305"}}}


id: MONDO:0022405
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete retinal ciliopathy due to mutation in nephronophthisis gene (obsolete MONDO:0022405)","secondary_identifiers":["Orphanet:156180"],"termid":"MONDO:0022405","xrefs":{"Monarch":{"xref_id":"0022405"}}}


id: GO:0000781
data:
  {"annotated_genes":["SJAG_04586","SJAG_03460","SJAG_01837","SJAG_05372","SJAG_02771","SJAG_03356","SJAG_03664","SJAG_03449","SJAG_01745","SJAG_03128","SJAG_01332","SJAG_05173","SJAG_06597","SJAG_00378","SJAG_04700","SJAG_03048","SJAG_04372","SJAG_02768","SJAG_00676","SJAG_02362","SJAG_02621","SJAG_03287","SJAG_01675","SJAG_03092","SJAG_03942","SJAG_02863","SJAG_01378","SJAG_01864","SJAG_04245","SJAG_03916","SJAG_03945","SJAG_03418","SJAG_02872","SJAG_00335","SJAG_00640","SJAG_04863","SJAG_05105","SJAG_04097","SJAG_02212","SJAG_03543","SJAG_05260","SJAG_04190","SJAG_00884","SJAG_06642","SJAG_03855","SJAG_03042","SJAG_00678","SJAG_03298","SJAG_04508","SJAG_03789","SJAG_04150","SJAG_00939","SJAG_03997","SJAG_02119","SJAG_00302","SJAG_05979","SJAG_04400","SJAG_01777","SJAG_03982","SJAG_01698","SJAG_04205","SJAG_03780","SJAG_03026","SJAG_03685","SJAG_01046","SJAG_00934","SJAG_01605","SJAG_01601","SJAG_04623","SJAG_04039","SJAG_04183","SJAG_02401","SJAG_04574","SJAG_02778","SJAG_01873","SJAG_02194","SJAG_02116","SJAG_00429","SJAG_01067","SJAG_05353","SJAG_01579","SJAG_03722","SJAG_01377","SJAG_05239","SJAG_00756","SJAG_04186","SJAG_01075","SJAG_05373","SJAG_06560","SJAG_02576","SJAG_01540","SJAG_02908","SJAG_03720","SJAG_00364","SJAG_04201","SJAG_02348","SJAG_04140","SJAG_03844","SJAG_00293","SJAG_03680","SJAG_02818","SJAG_02563","SJAG_04142"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[119549,119983],"is_not":false,"summary":null,"term":"GO:0000781"},{"annotations":[106661,89677,89393,114661,114800,117243,118093,88181,108518,111588,90367,118952,91658,92112],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0099115"},{"annotations":[59875,113310,117048,59271,113309,100255,113206,116633,113311,64028,116702,113257,108519,118486,108481,99789,69554,104487,58299,110582,58703,106974,91751,101195,109470,99516,92394,112097,111918,66641,69706,71339,101471,90952,59452,60343,119015,61638,98607,113667,111559,58860,97747,112889,104522,60083,66340,77487,67495,92851,111905,112474,88858,113308,66445,89439,107704,113307,106505,87718,99888,102683,57656],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140445"},{"annotations":[110740,63452],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1990879"},{"annotations":[90087,80125,95425,100055,92165,116328],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0070187"},{"annotations":[92399,112588,112992,91597,97057,96491,94158,94406,91248,103564,114369,117514,118087,104430,118492,112994,119216,110855,99448,99895,104529,116329,112993,112484,118145,113674],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0140720"},{"annotations":[108296],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000782"}]},"cv_name":"cellular_component","definition":"The end of a linear chromosome, required for the integrity and maintenance of the end. A chromosome telomere usually includes a region of telomerase-encoded repeats the length of which rarely exceeds 20 bp each and that permits the formation of a telomeric loop (T-loop). The telomeric repeat region is usually preceded by a sub-telomeric region that is gene-poor but rich in repetitive elements. Some telomeres only consist of the latter part (for eg. D. melanogaster telomeres).","definition_xrefs":["GOC:elh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosomal region","termid":"GO:0098687"}],"gene_count":103,"genes_by_uniquename":{"SJAG_00293":null,"SJAG_00302":null,"SJAG_00335":null,"SJAG_00364":null,"SJAG_00378":null,"SJAG_00429":null,"SJAG_00640":null,"SJAG_00676":null,"SJAG_00678":null,"SJAG_00756":null,"SJAG_00884":null,"SJAG_00934":null,"SJAG_00939":null,"SJAG_01046":null,"SJAG_01067":null,"SJAG_01075":null,"SJAG_01332":null,"SJAG_01377":null,"SJAG_01378":null,"SJAG_01540":null,"SJAG_01579":null,"SJAG_01601":null,"SJAG_01605":null,"SJAG_01675":null,"SJAG_01698":null,"SJAG_01745":null,"SJAG_01777":null,"SJAG_01837":null,"SJAG_01864":null,"SJAG_01873":null,"SJAG_02116":null,"SJAG_02119":null,"SJAG_02194":null,"SJAG_02212":null,"SJAG_02348":null,"SJAG_02362":null,"SJAG_02401":null,"SJAG_02563":null,"SJAG_02576":null,"SJAG_02621":null,"SJAG_02768":null,"SJAG_02771":null,"SJAG_02778":null,"SJAG_02818":null,"SJAG_02863":null,"SJAG_02872":null,"SJAG_02908":null,"SJAG_03026":null,"SJAG_03042":null,"SJAG_03048":null,"SJAG_03092":null,"SJAG_03128":null,"SJAG_03287":null,"SJAG_03298":null,"SJAG_03356":null,"SJAG_03418":null,"SJAG_03449":null,"SJAG_03460":null,"SJAG_03543":null,"SJAG_03664":null,"SJAG_03680":null,"SJAG_03685":null,"SJAG_03720":null,"SJAG_03722":null,"SJAG_03780":null,"SJAG_03789":null,"SJAG_03844":null,"SJAG_03855":null,"SJAG_03916":null,"SJAG_03942":null,"SJAG_03945":null,"SJAG_03982":null,"SJAG_03997":null,"SJAG_04039":null,"SJAG_04097":null,"SJAG_04140":null,"SJAG_04142":null,"SJAG_04150":null,"SJAG_04183":null,"SJAG_04186":null,"SJAG_04190":null,"SJAG_04201":null,"SJAG_04205":null,"SJAG_04245":null,"SJAG_04372":null,"SJAG_04400":null,"SJAG_04508":null,"SJAG_04574":null,"SJAG_04586":null,"SJAG_04623":null,"SJAG_04700":null,"SJAG_04863":null,"SJAG_05105":null,"SJAG_05173":null,"SJAG_05239":null,"SJAG_05260":null,"SJAG_05353":null,"SJAG_05372":null,"SJAG_05373":null,"SJAG_05979":null,"SJAG_06560":null,"SJAG_06597":null,"SJAG_06642":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005694"}],"interesting_parent_ids":["GO:0005694","GO:0005575"],"is_obsolete":false,"name":"chromosome, telomeric region","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000044":null,"GO_REF:0000107":null,"GO_REF:0000108":null,"PMID:24184107":null,"PMID:32109380":null},"secondary_identifiers":["GO:0000784","SO:0000624"],"synonyms":[{"name":"nuclear chromosome, telomere","type":"narrow"},{"name":"nuclear chromosome, telomeric region","type":"narrow"},{"name":"telomere","type":"related"}],"termid":"GO:0000781","terms_by_termid":{"GO:0000781":null,"GO:0000782":null,"GO:0070187":null,"GO:0099115":null,"GO:0140445":null,"GO:0140720":null,"GO:1990879":null}}


id: GO:0001667
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Cell migration that is accomplished by extension and retraction of a pseudopodium.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell migration","termid":"GO:0016477"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ameboidal-type cell migration","synonyms":[{"name":"ameboid cell migration","type":"exact"},{"name":"amoeboid cell migration","type":"exact"},{"name":"amoeboidal cell migration","type":"exact"}],"termid":"GO:0001667"}


id: GO:0015187
data:
  {"annotated_genes":["SJAG_00626","SJAG_04984"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[70327,78188],"is_not":false,"summary":null,"term":"GO:0015187"}]},"cv_name":"molecular_function","definition":"Enables the transfer of glycine from one side of a membrane to the other. Glycine is aminoethanoic acid.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic cation transmembrane transporter activity","termid":"GO:0015101"},{"relation_name":"is_a","term_name":"neutral L-amino acid transmembrane transporter activity","termid":"GO:0015175"},{"relation_name":"is_a","term_name":"carboxylic acid transmembrane transporter activity","termid":"GO:0046943"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00626":null,"SJAG_04984":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"glycine transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"glycine betaine/proline porter activity","type":"narrow"},{"name":"glycine transporter activity","type":"broad"},{"name":"proline/glycine/betaine:hydrogen/sodium symporter activity","type":"narrow"}],"termid":"GO:0015187","terms_by_termid":{"GO:0015187":null}}


id: MONDO:0800445
data:
  {"annotated_genes":["SJAG_02231"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87417],"is_not":false,"summary":null,"term":"MONDO:0800445"}]},"cv_name":"mondo","definition":"Any Birt-Hogg-Dube (BHD) syndrome in which the cause of the disease is a variation in the FLCN gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Birt-Hogg-Dube syndrome","termid":"MONDO:0800444"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02231":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"Birt-Hogg-Dube syndrome 1","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0050676","GARD:2322","ICD9:704.8","MedDRA:10067736","MESH:D058249","NCIT:C28244","Orphanet:122","SCTID:110985001","OMIM:135150"],"synonyms":[{"name":"Hornstein-Knickenberg syndrome","type":"exact"},{"name":"fibrofolliculomas with trichodiscomas and acrochordons","type":"exact"}],"termid":"MONDO:0800445","terms_by_termid":{"MONDO:0800445":null},"xrefs":{"Monarch":{"xref_id":"0800445"}}}


id: MONDO:0700022
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Chromosomal disorder in which chromosome 15 is affected.","definition_xrefs":["MONDO:patterns/chromosome_type"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal anomaly","termid":"MONDO:0020049"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 15 disorder","termid":"MONDO:0700022","xrefs":{"Monarch":{"xref_id":"0700022"}}}


id: PBO:0045044
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dickkopf WNT signaling pathway inhibitor 4","termid":"PBO:0045044"}


id: GO:0043970
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H3 by the addition of an acetyl group to a lysine residue at position 9 of the histone.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H3-K9 acetylation (obsolete GO:0043970)","synonyms":[{"name":"histone H3 acetylation at K9","type":"exact"},{"name":"histone H3K9 acetylation","type":"exact"}],"termid":"GO:0043970"}


id: MOD:00618
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  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative","definition_xrefs":["Unimod:299#W"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-tryptophan residue","termid":"MOD:00918"},{"relation_name":"is_a","term_name":"carboxylated residue","termid":"MOD:01152"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tryptophan carboxylation","synonyms":[{"name":"Carboxy","type":"related"},{"name":"Carboxylation","type":"related"}],"termid":"MOD:00618"}


id: MONDO:0007540
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Multiple endocrine neoplasia Type 1 (MEN1) is a frequent form of MEN, a rare inherited cancer syndrome, characterized by the development of neuroendocrine tumors of the parathyroid, pancreas, and anterior pituitary gland, and less commonly the adrenal cortical gland, with other non-endocrine tumors in some patients.","definition_xrefs":["Orphanet:652"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"familial primary hyperparathyroidism","termid":"MONDO:0016365"},{"relation_name":"is_a","term_name":"multiple endocrine neoplasia","termid":"MONDO:0017169"},{"relation_name":"is_a","term_name":"adrenal gland neoplasm","termid":"MONDO:0021227"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"multiple endocrine neoplasia type 1","secondary_identifiers":["GARD:3829","MESH:D018761","ICD9:237.4","ICD9:258.01","NANDO:2200405","SCTID:30664006","DOID:10017","MedDRA:10028190","NCIT:C3225","icd11.foundation:1638765741","OMIM:131100","UMLS:C0025267","MEDGEN:9957"],"synonyms":[{"name":"MEA 1","type":"related"},{"name":"MEA type 1","type":"exact"},{"name":"MEA type I","type":"exact"},{"name":"MEN1","type":"exact"},{"name":"MEN1 multiple endocrine neoplasia","type":"exact"},{"name":"MEN1 somatic mutations","type":"related"},{"name":"MEN1 syndrome","type":"exact"},{"name":"Wermer syndrome","type":"exact"},{"name":"Wermer's syndrome","type":"exact"},{"name":"endocrine adenomatosis multiple","type":"related"},{"name":"endocrine adenomatosis, multiple","type":"related"},{"name":"men 1","type":"exact"},{"name":"men type 1","type":"exact"},{"name":"men type I","type":"exact"},{"name":"multiple endocrine adenomatosis","type":"broad"},{"name":"multiple endocrine adenomatosis type 1","type":"exact"},{"name":"multiple endocrine adenomatosis type I","type":"exact"},{"name":"multiple endocrine adenomatosis, type I","type":"exact"},{"name":"multiple endocrine neoplasia 1","type":"exact"},{"name":"multiple endocrine neoplasia caused by mutation in MEN1","type":"exact"},{"name":"multiple endocrine neoplasia type 1","type":"exact"},{"name":"multiple endocrine neoplasia type 1 syndrome","type":"exact"},{"name":"multiple endocrine neoplasia type I","type":"exact"},{"name":"multiple endocrine neoplasia, type 1","type":"related"},{"name":"multiple endocrine neoplasia, type I","type":"exact"}],"termid":"MONDO:0007540","xrefs":{"Monarch":{"xref_id":"0007540"}}}


id: PBO:0040532
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"beta-1,3-N-acetylgalactosaminyltransferase 2","termid":"PBO:0040532"}


id: MONDO:0017426
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"non-syndromic polydactyly","termid":"MONDO:0011348"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"postaxial polydactyly of fingers","secondary_identifiers":["GARD:12460","UMLS:C0431904","Orphanet:294942","icd11.foundation:1146378807","SCTID:205131007","MEDGEN:609221"],"synonyms":[{"name":"postaxial polydactyly of hand","type":"exact"}],"termid":"MONDO:0017426","xrefs":{"Monarch":{"xref_id":"0017426"}}}


id: GO:0003289
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which anatomical structure of an atrial septum primum is generated and organized.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"atrial septum morphogenesis","termid":"GO:0060413"},{"relation_name":"part_of","term_name":"septum primum development","termid":"GO:0003284"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"atrial septum primum morphogenesis","termid":"GO:0003289"}


id: PR:Q9Y7N4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A D-amino-acid oxidase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04803","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"D-amino-acid oxidase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1450.07c","secondary_identifiers":["UniProtKB:Q9Y7N4"],"synonyms":[{"name":"DAAO (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"DAMOX (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"DAO (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-DAO","type":"exact"}],"termid":"PR:Q9Y7N4"}


id: PBO:0003605
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"box H/ACA snoRNP assembly protein Shq1 (predicted)","termid":"PBO:0003605"}


id: FYPO:0005016
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the posttranscriptional addition of acetyl groups to residues in an 18S rRNA molecule is abolished.","definition_xrefs":["PomBase:mah","PMID:25402480"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal rRNA modification","termid":"FYPO:0005015"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0006551","FYPO:0000294","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abolished 18S rRNA acetylation","synonyms":[{"name":"18S rRNA acetylation abolished","type":"exact"},{"name":"abolished 18S rRNA acetylation at C1297 and C1815","type":"narrow"},{"name":"abolished 18S rRNA acetylation during mitotic cell cycle","type":"related"},{"name":"abolished 18S rRNA acetylation during vegetative growth","type":"exact"},{"name":"abolished 18S rRNA acetylation on C1297 and C1815","type":"exact"},{"name":"abolished 18s rRNA cytidine (1297 and 1815) acetylation","type":"narrow"}],"termid":"FYPO:0005016"}


id: GO:0008017
data:
  {"annotated_genes":["SJAG_01546","SJAG_01760","SJAG_02624","SJAG_00851","SJAG_02814","SJAG_00723","SJAG_03073","SJAG_00332","SJAG_00930","SJAG_01613","SJAG_02609","SJAG_03835","SJAG_04841","SJAG_01297","SJAG_02336","SJAG_00042","SJAG_02040","SJAG_03540","SJAG_02045","SJAG_02795","SJAG_04745","SJAG_00773"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[59179,59596,61486,62601,64225,64300,66871,68859,69434,74186,74382,76280,76677,77510,77529,79230],"is_not":false,"summary":null,"term":"GO:0008017"},{"annotations":[72110,71534],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051011"},{"annotations":[69005,80233,71007,65866],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051010"}]},"cv_name":"molecular_function","definition":"Binding to a microtubule, a filament composed of tubulin monomers.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tubulin binding","termid":"GO:0015631"}],"gene_count":22,"genes_by_uniquename":{"SJAG_00042":null,"SJAG_00332":null,"SJAG_00723":null,"SJAG_00773":null,"SJAG_00851":null,"SJAG_00930":null,"SJAG_01297":null,"SJAG_01546":null,"SJAG_01613":null,"SJAG_01760":null,"SJAG_02040":null,"SJAG_02045":null,"SJAG_02336":null,"SJAG_02609":null,"SJAG_02624":null,"SJAG_02795":null,"SJAG_02814":null,"SJAG_03073":null,"SJAG_03540":null,"SJAG_03835":null,"SJAG_04745":null,"SJAG_04841":null},"genotype_count":0,"in_subsets":["mf_goslim_japonicus"],"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008092"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0008092","GO:0003674"],"is_obsolete":false,"name":"microtubule binding","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-9614343"],"synonyms":[{"name":"microtubule severing activity","type":"related"},{"name":"microtubule/chromatin interaction","type":"related"}],"termid":"GO:0008017","terms_by_termid":{"GO:0008017":null,"GO:0051010":null,"GO:0051011":null}}


id: PBO:0079654
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBE2V1 pseudogene 2","termid":"PBO:0079654"}


id: MONDO:0014896
data:
  {"annotated_genes":["SJAG_02096"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86463],"is_not":false,"summary":null,"term":"MONDO:0014896"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital muscular dystrophy","termid":"MONDO:0019950"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02096":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005336","MONDO:0002320"],"is_obsolete":false,"name":"congenital muscular dystrophy-respiratory failure-skin abnormalities-joint hyperlaxity syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:934703","GARD:17883","OMIM:617066","Orphanet:486815","UMLS:C4310736"],"synonyms":[{"name":"MDCDC","type":"exact"},{"name":"congenital muscular dystrophy, Davignon-Chauveau type","type":"exact"},{"name":"muscular dystrophy, congenital, Davignon-Chauveau type","type":"exact"}],"termid":"MONDO:0014896","terms_by_termid":{"MONDO:0014896":null},"xrefs":{"Monarch":{"xref_id":"0014896"}}}


id: PR:O14041
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC2C4.08 gene.","definition_xrefs":["UniProtKB:O14041","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized nucleolar protein C2C4.08 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2C4.08","synonyms":[{"name":"Spom972h-SPAC2C4.08","type":"exact"}],"termid":"PR:O14041"}


id: PBO:0026938
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_onset_of_meiosis_I","termid":"PBO:0026938"}


id: GO:0102435
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: myricetin + S-adenosyl-L-methionine = 7-O-methylmyricetin + H+ + S-adenosyl-L-homocysteine.","definition_xrefs":["RHEA:74719"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016741","GO:0003674","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"myricetin 7-O-methyltransferase activity","secondary_identifiers":["MetaCyc:RXN-13910"],"termid":"GO:0102435"}


id: MONDO:1010903
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any neuronal ceroid lipofuscinosis that occurs in pigs due to a mutation in the CLN3 gene created using gene editing.","definition_xrefs":["OMIA:002432-9823"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuronal ceroid lipofuscinosis, pig","termid":"MONDO:1011577"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuronal ceroid lipofuscinosis, CLN3-related, pig","synonyms":[{"name":"CLN3","type":"exact"},{"name":"neuronal ceroid lipofuscinosis, 3, pig","type":"related"}],"termid":"MONDO:1010903","xrefs":{"Monarch":{"xref_id":"1010903"}}}


id: MONDO:0003155
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A hemangioma characterized by the presence of cavernous vascular spaces.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hematopoietic and lymphoid system neoplasm","termid":"MONDO:0002334"},{"relation_name":"is_a","term_name":"vascular hemostatic disease","termid":"MONDO:0003159"},{"relation_name":"is_a","term_name":"hemangioma","termid":"MONDO:0006500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"cavernous hemangioma","secondary_identifiers":["HP:0001048","NCIT:C3086","EFO:1000151","ICDO:9121/0","MEDGEN:9184","MESH:D006392","UMLS:C0018920","SCTID:56975005","DOID:483","MONDO:0006124","SCTID:416824008"],"synonyms":[{"name":"cavernoma","type":"exact"},{"name":"cavernous angioma","type":"exact"},{"name":"cavernous haemangioma","type":"exact"},{"name":"cavernous hemangioma","type":"exact"},{"name":"cavernous hemangioma (morphologic abnormality)","type":"exact"}],"termid":"MONDO:0003155","xrefs":{"Monarch":{"xref_id":"0003155"}}}


id: PBO:0073259
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin 7 pseudogene 3","termid":"PBO:0073259"}


id: PBO:0034564
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_molecular_function","termid":"PBO:0034564"}


id: FYPO:0000007
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A mitotic cell cycle checkpoint phenotype in which the S phase DNA damage checkpoint (also known as the intra-S phase DNA damage checkpoint) is abnormal. The S phase DNA damage checkpoint slows progression through S phase in response to DNA damage. In a mutant, the checkpoint may fail to arrest or delay cell cycle progression under appropriate conditions, or the incidence or duration of arrest or delay may differ from wild type under any specified set of conditions.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic DNA damage checkpoint","termid":"FYPO:0000006"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000298","FYPO:0001320","FYPO:0000631","FYPO:0000002"],"is_obsolete":false,"name":"abnormal S-phase DNA damage checkpoint","secondary_identifiers":["FYPO:0000195"],"synonyms":[{"name":"DNA damage checkpoint defects, S-phase","type":"exact"},{"name":"abnormal S-phase DNA damage checkpoint activation","type":"related"},{"name":"abnormal S-phase DNA damage checkpoint during mitotic cell cycle","type":"exact"},{"name":"abnormal S-phase DNA damage checkpoint during vegetative growth","type":"exact"},{"name":"abnormal intra-S DNA damage checkpoint","type":"exact"},{"name":"abnormal mitotic S-phase DNA damage checkpoint","type":"exact"}],"termid":"FYPO:0000007"}


id: GO:0033605
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the regulated release of a catecholamine.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of catecholamine secretion","termid":"GO:0050433"},{"relation_name":"is_a","term_name":"positive regulation of amine transport","termid":"GO:0051954"},{"relation_name":"is_a","term_name":"positive regulation of secretion by cell","termid":"GO:1903532"},{"relation_name":"positively_regulates","term_name":"catecholamine secretion","termid":"GO:0050432"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of catecholamine secretion","synonyms":[{"name":"activation of catecholamine secretion","type":"narrow"},{"name":"stimulation of catecholamine secretion","type":"narrow"},{"name":"up regulation of catecholamine secretion","type":"exact"},{"name":"up-regulation of catecholamine secretion","type":"exact"},{"name":"upregulation of catecholamine secretion","type":"exact"}],"termid":"GO:0033605"}


id: MONDO:0012344
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An Alzheimer's disease that is characterized by an associated with variation in the region 9p22.1.","definition_xrefs":["PMID:18761660","DOID:0110044"],"direct_ancestors":[{"relation_name":"is_a","term_name":"early-onset autosomal dominant Alzheimer disease","termid":"MONDO:0015140"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002039"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0002039","MONDO:0005559"],"is_obsolete":false,"name":"Alzheimer disease 11","secondary_identifiers":["OMIM:609790","MESH:C565228","MEDGEN:377886","UMLS:C1853360","GARD:16515"],"synonyms":[{"name":"AD11","type":"exact"},{"name":"Ad11","type":"related"},{"name":"Alzheimer disease 11","type":"exact"},{"name":"Alzheimer disease type 11","type":"exact"},{"name":"Alzheimer disease, familial, 11","type":"related"},{"name":"Alzheimer disease-11","type":"exact"},{"name":"Alzheimer's disease 11","type":"exact"},{"name":"Alzheimer's disease type 11","type":"exact"}],"termid":"MONDO:0012344","xrefs":{"Monarch":{"xref_id":"0012344"}}}


id: PR:O94607
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- str2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94607"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"siderophore iron transporter 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC61.01c","synonyms":[{"name":"Spom972h-str2","type":"exact"}],"termid":"PR:O94607"}


id: FYPO:0001793
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell shows increased resistance to conditions that degrade the cell wall.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vegetative cell phenotype","termid":"FYPO:0001320"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"resistant to cell wall digestion","synonyms":[{"name":"resistant to cell wall digestion during mitotic cell cycle","type":"related"},{"name":"resistant to cell wall digestion during vegetative growth","type":"exact"}],"termid":"FYPO:0001793"}


id: MONDO:0100184
data:
  {"annotated_genes":["SJAG_03275"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85395],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007495"},{"annotations":[85756],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0100186"}]},"cv_name":"mondo","definition":"A disease characterized by a deficiency in GTP cyclohydrolase I, which leads to a consequent reduction in BH4 and reduces the activity of three BH4-cofactor dependent enzymes - phenylalanine hydroxylase, tyrosine hydroxylase, and tryptophan hydroxylase. GTP cyclohydrolase I deficiency encompasses a spectrum of disease that includes autosomal dominant and autosomal recessive forms, with severity correlating with the residual enzyme activity. Individuals who are heterozygous for pathogenic variants in GCH1 have symptoms ranging from none (due to reduced penetrance) to dopa-responsive dystonia, which is the most common presentation in symptomatic cases, to rarer neurological presentations such as adult-onset \\\"benign\\\" parkinsonism, various types of focal dystonia, and symptoms simulating cerebral palsy or spastic paraplegia. Hyperphenylalaninemia is absent, and patients respond well to treatment with levodopa. Individuals who are homozygous or compound heterozygous for pathogenic variants in GCH1 typically present with hyperphenylalaninemia, often identified by newborn screening, and severe neurological features and due to very low or undetectable enzyme activity. Treatment with levodopa, BH4, and 5-hydroxytryptophan can improve the symptoms but does not prevent development of severe encephalopathy. Rare cases of GTP cyclohydrolase I deficiency with a phenotype that is intermediate in severity between dopa-responsive dystonia and the severe autosomal recessive form have also been described, supporting the existence a phenotypic spectrum of disease.","definition_xrefs":["PMID:19332422","PMID:20818608","PMID:9566389","PMID:19234759","PMID:22729819","PMID:18276179","PMID:29471552","PMID:9667588","PMID:18044725","PMID:20842687"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tetrahydrobiopterin metabolic process disease","termid":"MONDO:0045014"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03275":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0004736","MONDO:0005066"],"is_obsolete":false,"name":"GTP cyclohydrolase I deficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C0268467","MEDGEN:75683"],"synonyms":[{"name":"GTP cyclohydrolase I deficiency","type":"exact"},{"name":"GTP-cyclohydrolase I deficiency","type":"exact"}],"termid":"MONDO:0100184","terms_by_termid":{"MONDO:0007495":null,"MONDO:0100186":null},"xrefs":{"Monarch":{"xref_id":"0100184"}}}


id: GO:0015121
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: phosphoenolpyruvate(out) + phosphate(in) = phosphoenolpyruvate(in) + phosphate(out).","definition_xrefs":["GOC:jl","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organophosphate:phosphate antiporter activity","termid":"GO:0015315"},{"relation_name":"is_a","term_name":"secondary active monocarboxylate transmembrane transporter activity","termid":"GO:0015355"},{"relation_name":"is_a","term_name":"phosphoenolpyruvate transmembrane transporter activity","termid":"GO:0089721"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"phosphoenolpyruvate:phosphate antiporter activity","synonyms":[{"name":"PPT","type":"broad"},{"name":"phosphoenolpyruvate/phosphate translocator","type":"exact"}],"termid":"GO:0015121"}


id: SO:0002368
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene that codes for plastid SSU rRNA.","direct_ancestors":[{"relation_name":"is_a","term_name":"plastid_rRNA_gene","termid":"SO:0002366"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plastid_SSU_rRNA_gene","synonyms":[{"name":"plastid small subunit rRNA gene","type":"exact"}],"termid":"SO:0002368"}


id: MONDO:0859313
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with speech impairment and with or without seizures","secondary_identifiers":["OMIM:620114","UMLS:C5774252","MEDGEN:1824025"],"termid":"MONDO:0859313","xrefs":{"Monarch":{"xref_id":"0859313"}}}


id: PBO:0049007
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycoprotein hormone subunit beta 5","termid":"PBO:0049007"}


id: GO:0072589
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A box H/ACA RNP complex that is located in the Cajal body of the nucleoplasm. In higher eukaryotes, box H/ACA RNP located in Cajal bodies mediate pseudouridylation of spliceosomal snRNAs.","definition_xrefs":["GOC:mah","PMID:17284456","PMID:20227365"],"direct_ancestors":[{"relation_name":"is_a","term_name":"box H/ACA RNP complex","termid":"GO:0072588"},{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"},{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"},{"relation_name":"part_of","term_name":"Cajal body","termid":"GO:0015030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005654"}],"interesting_parent_ids":["GO:0005654","GO:0005575","GO:0005634","GO:0032991"],"is_obsolete":false,"name":"box H/ACA scaRNP complex","synonyms":[{"name":"nucleoplasmic box H/ACA RNP pseudouridylase complex","type":"exact"}],"termid":"GO:0072589"}


id: PBO:0071362
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L29 pseudogene 21","termid":"PBO:0071362"}


id: GO:0030500
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of bone mineralization.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of ossification","termid":"GO:0030278"},{"relation_name":"is_a","term_name":"regulation of biomineral tissue development","termid":"GO:0070167"},{"relation_name":"regulates","term_name":"bone mineralization","termid":"GO:0030282"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of bone mineralization","termid":"GO:0030500"}


id: MONDO:0012648
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inborn error of valine metabolism. The prevalence is unknown. Only one symptomatic patient (with anemia, failure to thrive, dilated cardiomyopathy and plasma carnitine deficiency) has been described so far, but several series of patients have been identified through newborn screening programs relying on detection of increased C(4)-carnitine levels by tandem mass spectrometry. The disorder is caused by mutations in the ACAD8 gene (11q25).","definition_xrefs":["Orphanet:79159"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete syndrome associated with dilated cardiomyopathy (obsolete MONDO:0016337)","termid":"MONDO:0016337"},{"relation_name":"is_a","term_name":"classic organic aciduria","termid":"MONDO:0019215"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0004736","MONDO:0005066"],"is_obsolete":false,"name":"isobutyryl-CoA dehydrogenase deficiency","secondary_identifiers":["UMLS:C1969809","MEDGEN:370754","GARD:10223","MESH:C535541","NCIT:C129975","OMIM:611283"],"synonyms":[{"name":"Acad8 deficiency","type":"related"},{"name":"IBD deficiency","type":"related"},{"name":"acyl-Coa dehydrogenase family, member 8, deficiency of","type":"related"},{"name":"acyl-CoaA dehydrogenase family, member 8, deficiency of","type":"related"},{"name":"isobutyric aciduria","type":"exact"},{"name":"isobutyryl-CoA dehydrogenase deficiency","type":"exact"}],"termid":"MONDO:0012648","xrefs":{"Monarch":{"xref_id":"0012648"}}}


id: MONDO:0023197
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"frontonasal dysplasia Klippel feil syndrome","termid":"MONDO:0023197","xrefs":{"Monarch":{"xref_id":"0023197"}}}


id: PBO:0000416
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-CCCH type","termid":"PBO:0000416"}


id: PATO:0000048
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A physical quality inhering in a bearer by virtue of the bearer's disposition to being turned, bowed, or twisted without breaking.","definition_xrefs":["merriam-webster:merriam-webster"],"direct_ancestors":[{"relation_name":"is_a","term_name":"quality of a solid","termid":"PATO:0001546"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hardness","synonyms":[{"name":"impenetrability","type":"related"},{"name":"toughness","type":"related"}],"termid":"PATO:0000048"}


id: MONDO:0020064
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pulmonary valve agenesis is a rare congenital heart malformation characterized by a total or partial absence of the pulmonary valve leaflets associated with stenosis of the pulmonary artery orifice and aneurysmal dilatation of the pulmonary arteries. It usually occurs in association with additional cardiovascular malformations such as teralogy of fallot or ventricular septal defect, or can occur as part of a syndrome (e.g. 22q11.2 deletion syndrome). Clinical features depend on the presence of associated cardiac malformations and include pulmonary insufficiency, bronchial obstruction (secondary to compression by aneurysmally dilated pulmonary arteries), pulmonary stenosis, cyanosis, and cardiac failure.3424","definition_xrefs":["Orphanet:982"],"direct_ancestors":[{"relation_name":"is_a","term_name":"conotruncal heart malformations","termid":"MONDO:0016581"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pulmonary valve agenesis","secondary_identifiers":["SCTID:6996004","NANDO:2100095","GARD:4597","UMLS:C0344983","NANDO:2200280","MEDGEN:576671"],"synonyms":[{"name":"PVA","type":"exact"},{"name":"absent pulmonary valve syndrome","type":"exact"},{"name":"congenital absence of the pulmonary valve","type":"exact"},{"name":"pulmonary valves agenesis","type":"related"}],"termid":"MONDO:0020064","xrefs":{"Monarch":{"xref_id":"0020064"}}}


id: PBO:0109976
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy associated heterodimeric guanine nucleotide exchange factor (GEF) subunit Aut12","termid":"PBO:0109976"}


id: GO:1990179
data:
  {"annotated_genes":["SJAG_00279","SJAG_04703"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[119043,92656],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904498"}]},"cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained at, the actomyosin contractile ring.","definition_xrefs":["GOC:mah","PMID:23349808"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to cell cortex","termid":"GO:0072697"},{"relation_name":"is_a","term_name":"protein localization to cell division site","termid":"GO:0072741"},{"relation_name":"is_a","term_name":"protein localization to actin cytoskeleton","termid":"GO:1903119"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00279":null,"SJAG_04703":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"protein localization to actomyosin contractile ring","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"protein localisation to actomyosin contractile ring","type":"exact"}],"termid":"GO:1990179","terms_by_termid":{"GO:1904498":null}}


id: GO:0018304
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The incorporation of iron into a 4Fe-4S iron-sulfur cluster via tris-L-cysteinyl-L-aspartato tetrairon tetrasulfide.","definition_xrefs":["RESID:AA0286"],"gene_count":0,"genotype_count":0,"name":"obsolete iron incorporation into iron-sulfur cluster via tris-L-cysteinyl-L-aspartato tetrairon tetrasulfide (obsolete GO:0018304)","synonyms":[{"name":"iron incorporation into iron-sulphur cluster via tris-L-cysteinyl-L-aspartato tetrairon tetrasulphide","type":"exact"}],"termid":"GO:0018304"}


id: GO:1990672
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The joining of the lipid bilayer membrane around a medial-Golgi-derived vesicle to the lipid bilayer membrane around the Golgi trans cisterna. Vesicles are involved in anterograde transport.","definition_xrefs":["PMID:24119662","PMID:16038056","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Golgi vesicle fusion to target membrane","termid":"GO:0048210"},{"relation_name":"is_a","term_name":"vesicle fusion with Golgi apparatus","termid":"GO:0048280"},{"relation_name":"part_of","term_name":"inter-Golgi cisterna vesicle-mediated transport","termid":"GO:0048219"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0061024","GO:0016192"],"is_obsolete":false,"name":"medial-Golgi-derived vesicle fusion with Golgi trans cisterna membrane","termid":"GO:1990672"}


id: MOD:01811
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-methionine residue to 5x(13)C,1x(15)N labeled L-methionine.","definition_xrefs":["PubMed:12771378","Unimod:268#M"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-methionine residue","termid":"MOD:00913"},{"relation_name":"is_a","term_name":"5x(13)C,1x(15)N labeled residue","termid":"MOD:01809"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5x(13)C,1x(15)N labeled L-methionine","synonyms":[{"name":"13C(5) 15N(1) Silac label","type":"related"},{"name":"Label:13C(5)15N(1)","type":"related"}],"termid":"MOD:01811"}


id: PBO:0077033
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"THOC1 divergent transcript","termid":"PBO:0077033"}


id: GO:0014809
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of skeletal muscle contraction via the regulation of the release of sequestered calcium ion by sarcoplasmic reticulum into cytosol. The sarcoplasmic reticulum is the endoplasmic reticulum of striated muscle, specialised for the sequestration of calcium ions that are released upon receipt of a signal relayed by the T tubules from the neuromuscular junction.","definition_xrefs":["GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum","termid":"GO:0010880"},{"relation_name":"is_a","term_name":"regulation of skeletal muscle contraction by calcium ion signaling","termid":"GO:0014722"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0023052","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion","termid":"GO:0014809"}


id: PBO:0058606
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6738","termid":"PBO:0058606"}


id: GO:1902006
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of proline biosynthetic process.","definition_xrefs":["GOC:TermGenie","PMID:23415322"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of proline biosynthetic process","termid":"GO:1902005"},{"relation_name":"is_a","term_name":"negative regulation of proline metabolic process","termid":"GO:2000215"},{"relation_name":"is_a","term_name":"negative regulation of amino acid biosynthetic process","termid":"GO:2000283"},{"relation_name":"negatively_regulates","term_name":"proline biosynthetic process","termid":"GO:0006561"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006520"},{"rel_name":"negatively_regulates","termid":"GO:0006520"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006520","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"negative regulation of proline biosynthetic process","synonyms":[{"name":"down regulation of proline anabolism","type":"exact"},{"name":"down regulation of proline biosynthesis","type":"exact"},{"name":"down regulation of proline biosynthetic process","type":"exact"},{"name":"down regulation of proline formation","type":"exact"},{"name":"down regulation of proline synthesis","type":"exact"},{"name":"down-regulation of proline anabolism","type":"exact"},{"name":"down-regulation of proline biosynthesis","type":"exact"},{"name":"down-regulation of proline biosynthetic process","type":"exact"},{"name":"down-regulation of proline formation","type":"exact"},{"name":"down-regulation of proline synthesis","type":"exact"},{"name":"downregulation of proline anabolism","type":"exact"},{"name":"downregulation of proline biosynthesis","type":"exact"},{"name":"downregulation of proline biosynthetic process","type":"exact"},{"name":"downregulation of proline formation","type":"exact"},{"name":"downregulation of proline synthesis","type":"exact"},{"name":"inhibition of proline anabolism","type":"exact"},{"name":"inhibition of proline biosynthesis","type":"exact"},{"name":"inhibition of proline biosynthetic process","type":"narrow"},{"name":"inhibition of proline formation","type":"exact"},{"name":"inhibition of proline synthesis","type":"exact"},{"name":"negative regulation of proline anabolism","type":"exact"},{"name":"negative regulation of proline biosynthesis","type":"exact"},{"name":"negative regulation of proline formation","type":"exact"},{"name":"negative regulation of proline synthesis","type":"exact"}],"termid":"GO:1902006"}


id: FYPO:0007326
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which mitochondrial tRNA 3'-end processing is decreased. In mitochondrial tRNA 3'-end processing, the 3' end of a mitochondrial pre-tRNA molecule is converted to that of a mature mitochondrial tRNA.","definition_xrefs":["GO:0006396","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitochondrial RNA 3'-end processing","termid":"FYPO:0004956"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0000002","FYPO:0001985","FYPO:0000294","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"decreased mitochondrial tRNA 3'-end processing","synonyms":[{"name":"decreased mitochondrial tRNA 3'-end processing during mitotic cell cycle","type":"related"},{"name":"decreased mitochondrial tRNA 3'-end processing during vegetative growth","type":"exact"},{"name":"decreased mitochondrial transfer RNA 3'-end processing","type":"exact"},{"name":"reduced mitochondrial tRNA 3'-end processing","type":"exact"}],"termid":"FYPO:0007326"}


id: GO:0019557
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of L-histidine into other compounds, including glutamate and formate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glutamate metabolic process","termid":"GO:0006536"},{"relation_name":"is_a","term_name":"L-histidine catabolic process","termid":"GO:0006548"},{"relation_name":"is_a","term_name":"formate metabolic process","termid":"GO:0015942"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"L-histidine catabolic process to glutamate and formate","synonyms":[{"name":"histidine breakdown to glutamate and formate","type":"exact"},{"name":"histidine catabolic process to glutamate and formate","type":"broad"},{"name":"histidine degradation to glutamate and formate","type":"exact"}],"termid":"GO:0019557"}


id: MONDO:0020224
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Rare cataract.","gene_count":0,"genotype_count":0,"name":"obsolete rare cataract (obsolete MONDO:0020224)","secondary_identifiers":["Orphanet:98640"],"synonyms":[{"name":"rare cataract","type":"exact"},{"name":"rare cataract (disease)","type":"exact"}],"termid":"MONDO:0020224","xrefs":{"Monarch":{"xref_id":"0020224"}}}


id: MOD:00842
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes atoms of particular common isotopes with atoms of or groups containing (13)C.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isotope labeled residue","termid":"MOD:00702"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"(13)C labeled residue","termid":"MOD:00842"}


id: PBO:0080272
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 35 pseudogene","termid":"PBO:0080272"}


id: PBO:0066215
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein 22 pseudogene 11","termid":"PBO:0066215"}


id: PBO:0051953
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ITPR1 divergent transcript","termid":"PBO:0051953"}


id: GO:0019180
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-oxoglutarate + dTDP-4-amino-4,6-dideoxy-D-galactose = L-glutamate + dTDP-4-dehydro-6-deoxy-D-galactose.","definition_xrefs":["RHEA:10368","EC:2.6.1.59"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016769","GO:0016740"],"is_obsolete":false,"name":"dTDP-4-amino-4,6-dideoxygalactose transaminase activity","secondary_identifiers":["MetaCyc:RFFTRANS-RXN","KEGG_REACTION:R04438"],"synonyms":[{"name":"dTDP-4,6-dideoxy-D-galactose:2-oxoglutarate aminotransferase activity","type":"related"},{"name":"dTDP-4-amino-4,6-dideoxygalactose aminotransferase activity","type":"related"},{"name":"dTDP-fucosamine aminotransferase activity","type":"exact"},{"name":"thymidine diphosphate 4-keto-6-deoxy-D-glucose transaminase activity","type":"related"},{"name":"thymidine diphosphoaminodideoxygalactose aminotransferase activity","type":"related"}],"termid":"GO:0019180"}


id: GO:0000714
data:
  {"annotated_genes":["SJAG_02294"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[100985],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902346"}]},"cv_name":"biological_process","definition":"The cell cycle process in which the broken 3' single-strand DNA molecule that formed heteroduplex DNA with its complement in an intact duplex DNA is rejected. The Watson-Crick base pairing in the original duplex is restored. The rejected 3' single-strand DNA molecule reanneals with its original complement to reform two intact duplex molecules. This occurs during meiosis.","definition_xrefs":["PMID:10357855","GOC:elh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA strand displacement","termid":"GO:0000732"},{"relation_name":"is_a","term_name":"meiosis I cell cycle process","termid":"GO:0061982"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02294":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006310"}],"interesting_parent_ids":["GO:0008150","GO:0006259","GO:0007049","GO:0006310"],"is_obsolete":false,"name":"meiotic strand displacement","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"meiotic D-loop dissociation","type":"related"},{"name":"meiotic D-loop processing","type":"related"},{"name":"meiotic displacement loop dissociation","type":"related"},{"name":"meiotic displacement loop processing","type":"related"}],"termid":"GO:0000714","terms_by_termid":{"GO:1902346":null}}


id: FYPO:0002325
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a sterol measured in a cell differs from normal. A sterol is any natural product derived from the steroid skeleton and containing a hydroxy group in the 3 position, closely related to cholestan-3-ol.","definition_xrefs":["CHEBI:15889","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered level of substance in cell during vegetative growth","termid":"FYPO:0001323"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"altered cellular sterol level","synonyms":[{"name":"abnormal sterol level","type":"exact"},{"name":"altered cellular sterol level during mitotic cell cycle","type":"related"},{"name":"altered cellular sterol level during vegetative growth","type":"exact"},{"name":"altered sterol level","type":"exact"}],"termid":"FYPO:0002325"}


id: MONDO:0019406
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Craniofacial conodysplasia is characterized by craniofacial dysplasia, cone-shaped physes of the hands and feet, and neurological manifestations resembling cerebral palsy. It has been described in one family. The syndrome appeared to be transmitted as a dominant trait.","definition_xrefs":["Orphanet:85168"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acromelic dysplasia","termid":"MONDO:0019695"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"craniofacial conodysplasia","secondary_identifiers":["UMLS:C4303862","GARD:19049","MEDGEN:929531"],"termid":"MONDO:0019406","xrefs":{"Monarch":{"xref_id":"0019406"}}}


id: PBO:0052994
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"laminin subunit alpha 5","termid":"PBO:0052994"}


id: GO:0160097
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of a DNA topological transformation by transiently cleaving one DNA strand at a time to allow passage of another strand; changes the linking number by +1 per catalytic cycle, is driven by ATP hydrolysis.","definition_xrefs":["PMID:25013168"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA topoisomerase activity","termid":"GO:0003916"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0003824","GO:0140097","GO:0003674","GO:0016853"],"is_obsolete":false,"name":"reverse gyrase activity","secondary_identifiers":["WIKIPEDIA:Reverse_gyrase"],"termid":"GO:0160097"}


id: GO:0060101
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the internalization of bacteria, immune complexes and other particulate matter or of an apoptotic cell by phagocytosis.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of phagocytosis","termid":"GO:0050765"},{"relation_name":"is_a","term_name":"regulation of phagocytosis, engulfment","termid":"GO:0060099"},{"relation_name":"is_a","term_name":"negative regulation of membrane invagination","termid":"GO:1905154"},{"relation_name":"negatively_regulates","term_name":"phagocytosis, engulfment","termid":"GO:0006911"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0061024"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0061024"},{"rel_name":"negatively_regulates","termid":"GO:0016192"},{"rel_name":"regulates","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0008150","GO:0061024","GO:0016192","GO:0006810"],"is_obsolete":false,"name":"negative regulation of phagocytosis, engulfment","termid":"GO:0060101"}


id: PBO:0050009
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HK2 divergent transcript","termid":"PBO:0050009"}


id: PBO:0084734
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial integral inner membrane protein; involved in membrane insertion of C-terminus of Cox2p, interacts genetically and physically with Cox18p; deletion mutant sensitive to the anti-Pneumocystis carinii drug pentamidine","termid":"PBO:0084734"}


id: MONDO:0005584
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Serious heritable structural anomalies of the left side of the heart, including hypoplastic left heart syndrome, aortic valve stenosis, coarctation of the aorta, mitral valve anomalies and bicuspid aortic valve, that are present from birth.","definition_xrefs":["EFO:0005938"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital heart malformation","termid":"MONDO:0019512"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital left-sided heart lesions","secondary_identifiers":["MEDGEN:868006","UMLS:C4022397"],"termid":"MONDO:0005584","xrefs":{"Monarch":{"xref_id":"0005584"}}}


id: GO:0043055
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Maintenance of a nematode during the facultative diapause of the dauer (enduring) larval stage of nematode development.","definition_xrefs":["GOC:cab1","WB_REF:wm2003ab740"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maintenance of diapause","termid":"GO:0071982"},{"relation_name":"part_of","term_name":"dauer larval development","termid":"GO:0040024"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"maintenance of dauer","synonyms":[{"name":"maintenance of dormancy in the nematode","type":"exact"}],"termid":"GO:0043055"}


id: GO:0098749
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a cerebellar neuron over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"central nervous system neuron development","termid":"GO:0021954"},{"relation_name":"part_of","term_name":"cerebellum development","termid":"GO:0021549"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cerebellar neuron development","termid":"GO:0098749"}


id: PBO:0084587
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Merged open reading frame; does not encode a discrete protein; YCR080W was originally annotated as an independent ORF, but as a result of a sequence change, it was merged with an adjacent ORF into a single reading frame, designated YCR081W","termid":"PBO:0084587"}


id: GO:1990783
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Cytoplasm situated near, or occurring around, a phagosome.","definition_xrefs":["PMID:18250451"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"periphagosomal region of cytoplasm","termid":"GO:1990783"}


id: PBO:0078845
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transient receptor potential cation channel subfamily C member 1","termid":"PBO:0078845"}


id: FYPO:0005174
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of uracil into the cell does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal uracil import","termid":"FYPO:0005170"},{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000138","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"abolished uracil import","synonyms":[{"name":"abolished uracil import across plasma membrane","type":"exact"},{"name":"abolished uracil import during mitotic cell cycle","type":"related"},{"name":"abolished uracil import during vegetative growth","type":"exact"},{"name":"abolished uracil import into cell","type":"exact"},{"name":"abolished uracil uptake","type":"exact"},{"name":"uracil import abolished","type":"exact"}],"termid":"FYPO:0005174"}


id: PBO:0039962
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor like GTPase 2 binding protein pseudogene 5","termid":"PBO:0039962"}


id: PBO:0076321
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synaptoporin","termid":"PBO:0076321"}


id: GO:1901034
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of L-glutamine import into cell.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of amino acid import across plasma membrane","termid":"GO:0010958"},{"relation_name":"is_a","term_name":"regulation of glutamine transport","termid":"GO:2000485"},{"relation_name":"regulates","term_name":"L-glutamine import across plasma membrane","termid":"GO:1903803"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0055085","GO:0008150"],"is_obsolete":false,"name":"regulation of L-glutamine import across plasma membrane","synonyms":[{"name":"regulation of L-glutamine import","type":"broad"},{"name":"regulation of L-glutamine uptake","type":"exact"}],"termid":"GO:1901034"}


id: PBO:0087135
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein required for the assembly of box H/ACA snoRNPs; thus required for pre-rRNA processing; forms a complex with Shq1p and interacts with H/ACA snoRNP components Nhp2p and Cbf5p; similar to Gar1p","termid":"PBO:0087135"}


id: GO:1900147
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of Schwann cell migration.","definition_xrefs":["GOC:TermGenie","GOC:sjw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of glial cell migration","termid":"GO:1903975"},{"relation_name":"regulates","term_name":"Schwann cell migration","termid":"GO:0036135"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of Schwann cell migration","termid":"GO:1900147"}


id: PBO:0116993
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GREB1L antisense RNA 1","termid":"PBO:0116993"}


id: GO:0001695
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of histamine, a physiologically active amine, found in plant and animal tissue and released from mast cells as part of an allergic reaction in humans.","definition_xrefs":["GOC:jl","ISBN:0395825172"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histamine metabolic process","termid":"GO:0001692"},{"relation_name":"is_a","term_name":"biogenic amine catabolic process","termid":"GO:0042402"},{"relation_name":"is_a","term_name":"imidazole-containing compound catabolic process","termid":"GO:0052805"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"histamine catabolic process","synonyms":[{"name":"histamine breakdown","type":"exact"},{"name":"histamine catabolism","type":"exact"},{"name":"histamine degradation","type":"exact"}],"termid":"GO:0001695"}


id: PBO:0076421
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TATA-box binding protein associated factor 9 pseudogene 2","termid":"PBO:0076421"}


id: PBO:0051826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interferon regulatory factor 2 binding protein 2","termid":"PBO:0051826"}


id: FYPO:0003314
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype observed in the vegetative growth phase of the life cycle in which the activation of monopolar cell growth occurs at the new end of the cell, instead of at the old end, following cell division.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal activation of monopolar cell growth","termid":"FYPO:0001393"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"activation of monopolar cell growth at new end","synonyms":[{"name":"abnormal initiation of growth from new end following cell division","type":"exact"},{"name":"activation of monopolar vegetative cell growth at new end","type":"exact"}],"termid":"FYPO:0003314"}


id: MONDO:0970998
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"auroneurodental syndrome","secondary_identifiers":["OMIM:620830","UMLS:C5889721","MEDGEN:1861965"],"termid":"MONDO:0970998","xrefs":{"Monarch":{"xref_id":"0970998"}}}


id: PR:P0CT66
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rps1801 gene.","definition_xrefs":["UniProtKB:P0CT66","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S18-A (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16D10.11c","synonyms":[{"name":"Spom972h-rps1801","type":"exact"}],"termid":"PR:P0CT66"}


id: GO:0070288
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that binds iron and acts as a major iron storage system. There are three major subclasses of ferritins: the classical ferritins (Ftn), the heme-containing bacterioferritins (Bfr) and the DNA-binding proteins from starved cells (Dps). Ftn and Bfr are made of 24 subunits, whereas Dps are smaller with 12 subunits. Ftn is found in most kindoms, while Bfr and Dps are restricted to prokaryotes.","definition_xrefs":["PMID:19154717","PMID:33881539"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"ferritin complex","termid":"GO:0070288"}


id: PBO:0070878
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L15 pseudogene 9","termid":"PBO:0070878"}


id: RO:0002593
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"x existence starts at point y if and only if the time point at which x starts is equivalent to the time point at which y ends.","direct_ancestors":[{"relation_name":"is_a","term_name":"relation_between_structure_and_stage","termid":"RO:0002487"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"existence_ends_at_point","termid":"RO:0002593"}


id: PBO:0029734
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_aculeacin_A","termid":"PBO:0029734"}


id: PBO:0067300
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 385, pseudogene","termid":"PBO:0067300"}


id: GO:0050774
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of dendrite morphogenesis.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell projection organization","termid":"GO:0031345"},{"relation_name":"is_a","term_name":"regulation of dendrite morphogenesis","termid":"GO:0048814"},{"relation_name":"is_a","term_name":"negative regulation of neurogenesis","termid":"GO:0050768"},{"relation_name":"negatively_regulates","term_name":"dendrite morphogenesis","termid":"GO:0048813"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of dendrite morphogenesis","synonyms":[{"name":"down regulation of dendrite morphogenesis","type":"exact"},{"name":"down-regulation of dendrite morphogenesis","type":"exact"},{"name":"downregulation of dendrite morphogenesis","type":"exact"},{"name":"inhibition of dendrite morphogenesis","type":"narrow"}],"termid":"GO:0050774"}


id: GO:1903894
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the IRE1-mediated unfolded protein response.","definition_xrefs":["GOC:bf","PMID:22013210","GO_REF:0000058","GOC:TermGenie","GOC:PARL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of endoplasmic reticulum unfolded protein response","termid":"GO:1900101"},{"relation_name":"regulates","term_name":"IRE1-mediated unfolded protein response","termid":"GO:0036498"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of IRE1-mediated unfolded protein response","synonyms":[{"name":"regulation of ERN1-mediated unfolded protein response","type":"related"},{"name":"regulation of IRE1 branch of UPR","type":"exact"},{"name":"regulation of IRE1 signal transduction pathway","type":"broad"},{"name":"regulation of IRE1 signaling in response to endoplasmic reticulum stress","type":"related"},{"name":"regulation of IRE1alpha unfolded protein response","type":"narrow"},{"name":"regulation of IRE1p unfolded protein response","type":"narrow"},{"name":"regulation of UPR signaling by IRE1 stress sensor","type":"exact"},{"name":"regulation of endoplasmic reticulum unfolded protein response; IRE1 signaling","type":"exact"},{"name":"regulation of inositol-requiring transmembrane kinase/endonuclease signal transduction","type":"related"}],"termid":"GO:1903894"}


id: PBO:0085846
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; phosphorylated in response to alpha factor; protein abundance increases in response to DNA replication stress","termid":"PBO:0085846"}


id: PBO:0079385
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin beta 2A class IIa","termid":"PBO:0079385"}


id: FYPO:0006676
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription occurs to a lower extent than normal during a cellular response to hydroxyurea. All genes, or a specific subset of genes, may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased transcription during vegetative growth","termid":"FYPO:0000781"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0006551","FYPO:0001985","FYPO:0000294","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"decreased transcription during cellular response to hydroxyurea","synonyms":[{"name":"decreased transcription during cellular response to HU","type":"exact"},{"name":"decreased transcription during cellular response to hydroxyurea during mitotic cell cycle","type":"related"},{"name":"decreased transcription during cellular response to hydroxyurea during vegetative growth","type":"exact"},{"name":"decreased transcription in response to HU","type":"exact"},{"name":"decreased transcription in response to hydroxyurea","type":"exact"},{"name":"reduced transcription during cellular response to hydroxyurea","type":"exact"}],"termid":"FYPO:0006676"}


id: GO:0008714
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: AMP + H2O = D-ribose 5-phosphate + adenine.","definition_xrefs":["RHEA:20129","EC:3.2.2.4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing N-glycosyl compounds","termid":"GO:0016799"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016798"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016787","GO:0016798"],"is_obsolete":false,"name":"AMP nucleosidase activity","secondary_identifiers":["KEGG_REACTION:R00182","MetaCyc:AMP-NUCLEOSID-RXN"],"synonyms":[{"name":"AMP phosphoribohydrolase activity","type":"related"},{"name":"adenosine monophosphate nucleosidase activity","type":"related"},{"name":"adenylate nucleosidase activity","type":"related"}],"termid":"GO:0008714"}


id: PBO:0001686
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptionally regulated by Deb1","termid":"PBO:0001686"}


id: MONDO:0957405
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autoinflammatory syndrome","termid":"MONDO:0019751"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"granulomatous autoinflammatory syndrome of childhood","secondary_identifiers":["GARD:21460","Orphanet:324950","MEDGEN:1842911","UMLS:C5680954"],"termid":"MONDO:0957405","xrefs":{"Monarch":{"xref_id":"0957405"}}}


id: GO:1900706
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of siderophore biosynthetic process.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of secondary metabolite biosynthetic process","termid":"GO:1900378"},{"relation_name":"is_a","term_name":"regulation of siderophore biosynthetic process","termid":"GO:1900704"},{"relation_name":"positively_regulates","term_name":"siderophore biosynthetic process","termid":"GO:0019290"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"positive regulation of siderophore biosynthetic process","synonyms":[{"name":"activation of siderochrome biosynthesis","type":"narrow"},{"name":"activation of siderochrome biosynthetic process","type":"narrow"},{"name":"activation of siderophore anabolism","type":"exact"},{"name":"activation of siderophore biosynthesis","type":"exact"},{"name":"activation of siderophore biosynthetic process","type":"narrow"},{"name":"activation of siderophore biosynthetic process, peptide formation","type":"narrow"},{"name":"activation of siderophore biosynthetic process, peptide modification","type":"narrow"},{"name":"activation of siderophore formation","type":"exact"},{"name":"activation of siderophore synthesis","type":"exact"},{"name":"positive regulation of siderochrome biosynthesis","type":"narrow"},{"name":"positive regulation of siderochrome biosynthetic process","type":"narrow"},{"name":"positive regulation of siderophore anabolism","type":"exact"},{"name":"positive regulation of siderophore biosynthesis","type":"exact"},{"name":"positive regulation of siderophore biosynthetic process, peptide formation","type":"narrow"},{"name":"positive regulation of siderophore biosynthetic process, peptide modification","type":"narrow"},{"name":"positive regulation of siderophore formation","type":"exact"},{"name":"positive regulation of siderophore synthesis","type":"exact"},{"name":"up regulation of siderochrome biosynthesis","type":"narrow"},{"name":"up regulation of siderochrome biosynthetic process","type":"narrow"},{"name":"up regulation of siderophore anabolism","type":"exact"},{"name":"up regulation of siderophore biosynthesis","type":"exact"},{"name":"up regulation of siderophore biosynthetic process","type":"exact"},{"name":"up regulation of siderophore biosynthetic process, peptide formation","type":"narrow"},{"name":"up regulation of siderophore biosynthetic process, peptide modification","type":"narrow"},{"name":"up regulation of siderophore formation","type":"exact"},{"name":"up regulation of siderophore synthesis","type":"exact"},{"name":"up-regulation of siderochrome biosynthesis","type":"narrow"},{"name":"up-regulation of siderochrome biosynthetic process","type":"narrow"},{"name":"up-regulation of siderophore anabolism","type":"exact"},{"name":"up-regulation of siderophore biosynthesis","type":"exact"},{"name":"up-regulation of siderophore biosynthetic process","type":"exact"},{"name":"up-regulation of siderophore biosynthetic process, peptide formation","type":"narrow"},{"name":"up-regulation of siderophore biosynthetic process, peptide modification","type":"narrow"},{"name":"up-regulation of siderophore formation","type":"exact"},{"name":"up-regulation of siderophore synthesis","type":"exact"},{"name":"upregulation of siderochrome biosynthesis","type":"narrow"},{"name":"upregulation of siderochrome biosynthetic process","type":"narrow"},{"name":"upregulation of siderophore anabolism","type":"exact"},{"name":"upregulation of siderophore biosynthesis","type":"exact"},{"name":"upregulation of siderophore biosynthetic process","type":"exact"},{"name":"upregulation of siderophore biosynthetic process, peptide formation","type":"narrow"},{"name":"upregulation of siderophore biosynthetic process, peptide modification","type":"narrow"},{"name":"upregulation of siderophore formation","type":"exact"},{"name":"upregulation of siderophore synthesis","type":"exact"}],"termid":"GO:1900706"}


id: PBO:0043586
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collagen type XVIII alpha 1 chain","termid":"PBO:0043586"}


id: MONDO:0042972
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"bacterial infectious disease with sepsis","termid":"MONDO:0005229"},{"relation_name":"is_a","term_name":"meningococcal infection","termid":"MONDO:0005373"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meningococcemia","secondary_identifiers":["ICD9:036.2","UMLS:C0025306","MEDGEN:6300","SCTID:4089001"],"synonyms":[{"name":"meningococcal septicemia","type":"related"},{"name":"meningococcemia","type":"exact"}],"termid":"MONDO:0042972","xrefs":{"Monarch":{"xref_id":"0042972"}}}


id: PBO:0004252
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carboxyl methyl esterase (predicted)","termid":"PBO:0004252"}


id: FYPO:0006404
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the spindle pole body is broken into fragments.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal spindle pole body morphology","termid":"FYPO:0004607"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"fragmented spindle pole body","synonyms":[{"name":"fragmented SPB","type":"exact"},{"name":"spindle pole body fragmentation","type":"exact"}],"termid":"FYPO:0006404"}


id: GO:0052132
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a motile cell or organism towards a higher concentration of environmental oxygen on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete positive aerotaxis on or near host (obsolete GO:0052132)","termid":"GO:0052132"}


id: GO:0052851
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 Fe3+-siderophore + NADP+ + H+ -> 2 Fe2+-siderophore + NADPH.","definition_xrefs":["RHEA:28795"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ferric-chelate reductase activity","termid":"GO:0000293"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on metal ions, NAD or NADP as acceptor","termid":"GO:0016723"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"ferric-chelate reductase (NADPH) activity","secondary_identifiers":["MetaCyc:RXN0-6555","EC:1.16.1.9","Reactome:R-HSA-917811","KEGG_REACTION:R09541"],"synonyms":[{"name":"ferric chelate reductase activity","type":"broad"},{"name":"ferric reductase, NADPH-dependent activity","type":"exact"},{"name":"iron chelate reductase activity","type":"broad"}],"termid":"GO:0052851"}


id: PBO:0048678
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycine decarboxylase pseudogene 1","termid":"PBO:0048678"}


id: PBO:0070423
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribulose-5-phosphate-3-epimerase pseudogene 1","termid":"PBO:0070423"}


id: PBO:0114069
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin heavy chain 16","termid":"PBO:0114069"}


