# terms

id: MOD:01694
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively results from forming an adduct between an L-cysteine residue and the bioluminescent compound didehydrocoelenterazine to form S-(coelenterazin-3a-yl)-L-cysteine.","definition_xrefs":["PubMed:18997450","RESID:AA0526","ChEBI:2311"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"S-(coelenterazin-3a-yl)-L-cysteine","synonyms":[{"name":"(2R)-2-amino-3-([(4-hydroxyphenyl)(8-benzyl-3-oxo-6-[4-hydroxyphenyl]-3,7-dihydroimidazo[1,2-a]pyrazin-2-yl)methyl]sulfanyl)propanoic acid","type":"exact"},{"name":"MOD_RES S-(coelenterazin-3a-yl)cysteine","type":"exact"},{"name":"S-(coelenterazin-3a-yl)-L-cysteine","type":"exact"},{"name":"dehydrocoelenterazine cysteine adduct","type":"exact"},{"name":"symplectin chromophore","type":"exact"}],"termid":"MOD:01694"}


id: PBO:0091544
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"I:4407494_4407495insG","termid":"PBO:0091544"}


id: PBO:0051276
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 1-6","termid":"PBO:0051276"}


id: GO:0048061
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a motile cell or organism towards the source of gravity.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gravitaxis","termid":"GO:0042332"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive gravitaxis","secondary_identifiers":["GO:0048064"],"synonyms":[{"name":"positive geotactic behavior","type":"exact"},{"name":"positive geotactic behaviour","type":"exact"},{"name":"positive gravitactic behavior","type":"exact"},{"name":"positive gravitactic behaviour","type":"exact"},{"name":"positive taxis in response to gravity","type":"exact"},{"name":"positive taxis in response to gravitytaxis in response to gravitational stimulus","type":"exact"}],"termid":"GO:0048061"}


id: GO:0002085
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that prevents the activation of neuroepithelial cell differentiation. Neuroepithelial cell differentiation is the process in which epiblast cells acquire specialized features of neuroepithelial cells.","definition_xrefs":["GOC:dph","PMID:16678814"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of anatomical structure morphogenesis","termid":"GO:0022603"},{"relation_name":"is_a","term_name":"negative regulation of epithelial cell differentiation","termid":"GO:0030857"},{"relation_name":"is_a","term_name":"regulation of embryonic development","termid":"GO:0045995"},{"relation_name":"is_a","term_name":"regulation of timing of cell differentiation","termid":"GO:0048505"},{"relation_name":"negatively_regulates","term_name":"neuroepithelial cell differentiation","termid":"GO:0060563"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"inhibition of neuroepithelial cell differentiation","synonyms":[{"name":"negative regulation of neural plate formation","type":"narrow"},{"name":"repression of premature neural plate formation","type":"narrow"}],"termid":"GO:0002085"}


id: PBO:0080954
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZBED9 antisense RNA 1","termid":"PBO:0080954"}


id: PBO:0040259
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy related 12 pseudogene 2","termid":"PBO:0040259"}


id: MONDO:0015125
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Rare thyroid disease.","gene_count":0,"genotype_count":0,"name":"obsolete rare thyroid disease (obsolete MONDO:0015125)","secondary_identifiers":["Orphanet:101955"],"synonyms":[{"name":"rare thyroid disease","type":"exact"},{"name":"rare thyroid gland disease","type":"exact"}],"termid":"MONDO:0015125","xrefs":{"Monarch":{"xref_id":"0015125"}}}


id: MONDO:0012052
data:
  {"annotated_genes":["SJAG_02102"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85965],"is_not":false,"summary":null,"term":"MONDO:0012052"}]},"cv_name":"mondo","definition":"A severe form of congenital disorders of N-linked glycosylation characterized by severe developmental and psychomotor delay, muscular hypotonia, intractable early-onset seizures, and microcephaly. Additional features include altered blood coagulation with a high probability of hemorrhages or thromboses, nephrotic syndrome, ascites, hepatomegaly, cardiomyopathy, ocular manifestations (strabismus, nystagmus), and immunodeficiency. The disease is caused by loss-of-function mutations in the gene ALG1 (16p13.3).","definition_xrefs":["Orphanet:79327"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital disorder of glycosylation type I","termid":"MONDO:0005500"},{"relation_name":"is_a","term_name":"disorder of protein N-glycosylation","termid":"MONDO:0017740"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02102":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0024322"}],"interesting_parent_ids":["MONDO:0024322","MONDO:0005066"],"is_obsolete":false,"name":"ALG1-congenital disorder of glycosylation","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["SCTID:720941007","GARD:9838","MESH:C535749","UMLS:C2931005","DOID:0080563","MEDGEN:419308","OMIM:608540"],"synonyms":[{"name":"ALG1-CDG","type":"exact"},{"name":"ALG1-CDG (CDG-Ik)","type":"related"},{"name":"ALG1-congenital disorder of glycosylation","type":"exact"},{"name":"CDG 1K","type":"related"},{"name":"CDG Ik","type":"related"},{"name":"CDG syndrome type Ik","type":"exact"},{"name":"CDG-Ik","type":"exact"},{"name":"CDG1K","type":"exact"},{"name":"carbohydrate deficient glycoprotein syndrome type Ik","type":"exact"},{"name":"congenital disorder of glycosylation type 1k","type":"exact"},{"name":"congenital disorder of glycosylation type Ik","type":"exact"},{"name":"congenital disorder of glycosylation, type Ik","type":"related"},{"name":"mannosyltransferase 1 deficiency","type":"exact"}],"termid":"MONDO:0012052","terms_by_termid":{"MONDO:0012052":null},"xrefs":{"Monarch":{"xref_id":"0012052"}}}


id: PR:000050480
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the fin1 gene in Schizosaccharomyces pombe.","definition_xrefs":["PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G2-specific protein kinase fin1 (Schizosaccharomyces pombe)","pombase_gene_id":"SPAC19E9.02","synonyms":[{"name":"SPAC19E9.02","type":"related"},{"name":"Spom-fin1","type":"exact"},{"name":"fin1","type":"related"}],"termid":"PR:000050480"}


id: PBO:0070338
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY4 pseudogene 10","termid":"PBO:0070338"}


id: GO:1905917
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cell differentiation involved in phenotypic switching.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","GOC:rph","PMID:25089138","GOC:BHF","GOC:BHF_miRNA"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell differentiation","termid":"GO:0045597"},{"relation_name":"is_a","term_name":"regulation of cell differentiation involved in phenotypic switching","termid":"GO:1905915"},{"relation_name":"positively_regulates","term_name":"cell differentiation involved in phenotypic switching","termid":"GO:0090679"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cell differentiation involved in phenotypic switching","synonyms":[{"name":"activation of cell differentiation involved in phenotypic switching","type":"narrow"},{"name":"up regulation of cell differentiation involved in phenotypic switching","type":"exact"},{"name":"up-regulation of cell differentiation involved in phenotypic switching","type":"exact"},{"name":"upregulation of cell differentiation involved in phenotypic switching","type":"exact"}],"termid":"GO:1905917"}


id: PBO:0054442
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1839","termid":"PBO:0054442"}


id: GO:0050680
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the rate or extent of epithelial cell proliferation.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell population proliferation","termid":"GO:0008285"},{"relation_name":"is_a","term_name":"regulation of epithelial cell proliferation","termid":"GO:0050678"},{"relation_name":"negatively_regulates","term_name":"epithelial cell proliferation","termid":"GO:0050673"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of epithelial cell proliferation","synonyms":[{"name":"down regulation of epithelial cell proliferation","type":"exact"},{"name":"down-regulation of epithelial cell proliferation","type":"exact"},{"name":"downregulation of epithelial cell proliferation","type":"exact"},{"name":"inhibition of epithelial cell proliferation","type":"narrow"}],"termid":"GO:0050680"}


id: GO:1903907
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of plasma membrane raft polarization.","definition_xrefs":["GOC:als","GOC:TermGenie","PMID:23575248","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular component organization","termid":"GO:0051129"},{"relation_name":"is_a","term_name":"regulation of plasma membrane raft polarization","termid":"GO:1903906"},{"relation_name":"negatively_regulates","term_name":"plasma membrane raft polarization","termid":"GO:0044858"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0061024"},{"rel_name":"regulates","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0061024"],"is_obsolete":false,"name":"negative regulation of plasma membrane raft polarization","synonyms":[{"name":"down regulation of plasma membrane raft polarization","type":"exact"},{"name":"down-regulation of plasma membrane raft polarization","type":"exact"},{"name":"downregulation of plasma membrane raft polarization","type":"exact"},{"name":"inhibition of plasma membrane raft polarization","type":"narrow"}],"termid":"GO:1903907"}


id: MONDO:0002387
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant vascular neoplasm arising from the liver.","definition_xrefs":["NCIT:C4438"],"direct_ancestors":[{"relation_name":"is_a","term_name":"liver sarcoma","termid":"MONDO:0002397"},{"relation_name":"is_a","term_name":"hepatic vascular disorder","termid":"MONDO:0002405"},{"relation_name":"is_a","term_name":"angiosarcoma","termid":"MONDO:0016982"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0002515"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992","MONDO:0002515"],"is_obsolete":false,"name":"liver angiosarcoma","secondary_identifiers":["DOID:268","SCTID:109844006","GARD:5813","ONCOTREE:LIAS","ICD10CM:C22.3","ICDO:9124/3","MEDGEN:138027","UMLS:C0345907"],"synonyms":[{"name":"Lias","type":"related"},{"name":"angiosarcoma (disease) of liver","type":"exact"},{"name":"angiosarcoma of liver","type":"exact"},{"name":"angiosarcoma of the liver","type":"exact"},{"name":"hemangiosarcoma of liver","type":"exact"},{"name":"hemangiosarcoma of the liver","type":"exact"},{"name":"hepatic angiosarcoma","type":"exact"},{"name":"hepatic hemangiosarcoma","type":"exact"},{"name":"liver angiosarcoma","type":"exact"},{"name":"liver angiosarcoma (disease)","type":"exact"},{"name":"liver hemangiosarcoma","type":"exact"},{"name":"primary angiosarcoma of liver","type":"exact"},{"name":"primary angiosarcoma of the liver","type":"exact"}],"termid":"MONDO:0002387","xrefs":{"Monarch":{"xref_id":"0002387"}}}


id: PBO:0075004
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 115-15","termid":"PBO:0075004"}


id: GO:0001661
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A conditioned aversion to a specific chemical compound as a result of that compound being coupled with a noxious stimulus.","definition_xrefs":["GOC:dph","PMID:9920659"],"direct_ancestors":[{"relation_name":"is_a","term_name":"feeding behavior","termid":"GO:0007631"},{"relation_name":"is_a","term_name":"associative learning","termid":"GO:0008306"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"conditioned taste aversion","secondary_identifiers":["Wikipedia:Conditioned_taste_aversion","Wikipedia:Taste_aversion"],"termid":"GO:0001661"}


id: PBO:0078186
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor beta variable 3-1","termid":"PBO:0078186"}


id: PBO:0049648
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H4 clustered histone 2","termid":"PBO:0049648"}


id: GO:1990198
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A dimeric protein complex containing two ModE subunits. Binds directly to DNA to regulate transcription, and is involved in (positively and negatively) regulating various aspects of molybdenum metabolism.","definition_xrefs":["PMID:12581638","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription regulator complex","termid":"GO:0005667"},{"relation_name":"part_of","term_name":"cytosol","termid":"GO:0005829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005829"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005737","GO:0005829"],"is_obsolete":false,"name":"ModE complex","synonyms":[{"name":"ModE dimer","type":"exact"}],"termid":"GO:1990198"}


id: PBO:0031543
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_localization_to_prospore_membrane","termid":"PBO:0031543"}


id: PBO:0064096
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PITX1 antisense RNA 1","termid":"PBO:0064096"}


id: PBO:0114475
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tandem fusion lysine methyltransferase/ citidine deaminase involved in riboflavin biosynthesis","termid":"PBO:0114475"}


id: FYPO:0003440
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An inviable phenotype observed in the vegetative growth phase of the life cycle in which a cell lyses, i.e. the plasma membrane ruptures and cytoplasm is lost, during cytokinesis. Note that in fission yeast cell lysis, the integrity of the cell wall is also compromised.","definition_xrefs":["PomBase:mah","PMID:24798735"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vegetative cell lysis","termid":"FYPO:0000647"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000004","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"cell lysis during cytokinesis","synonyms":[{"name":"cell lysis during cytokinesis during mitotic cell cycle","type":"related"},{"name":"cell lysis during cytokinesis during vegetative growth","type":"exact"},{"name":"cytolysis during cytokinesis","type":"exact"},{"name":"inviable, lysed cell during cytokinesis","type":"exact"}],"termid":"FYPO:0003440"}


id: GO:0044035
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A catabolic process - chemical reactions and pathways resulting in the breakdown of substances - which involves more than one organism.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete multi-organism catabolic process (obsolete GO:0044035)","synonyms":[{"name":"multi-organism catabolism","type":"exact"},{"name":"multi-organismal catabolic process","type":"exact"},{"name":"multi-organismal catabolism","type":"exact"}],"termid":"GO:0044035"}


id: SO:0001359
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"5_carboxyhydroxymethyl_uridine_methyl_ester is a modified uridine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_uridine","termid":"SO:0001277"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"five_carboxyhydroxymethyl_uridine_methyl_ester","secondary_identifiers":["RNAMOD:067"],"synonyms":[{"name":"5-(carboxyhydroxymethyl)uridine methyl ester","type":"exact"},{"name":"five carboxyhydroxymethyl uridine methyl ester","type":"exact"},{"name":"mchm5U","type":"exact"}],"termid":"SO:0001359"}


id: PBO:0032764
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"expression of exogenous PCNA-binding peptide fused to EGFP causes phenotype of inviable elongated mononucleate cells","termid":"PBO:0032764"}


id: PATO:0000853
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000853 blinking reflex value (obsolete PATO:0000853)","termid":"PATO:0000853"}


id: PBO:0028617
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_U2_snRNP_binding","termid":"PBO:0028617"}


id: PBO:0089440
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces japonicus specific low-complexity Glycine rich protein","termid":"PBO:0089440"}


id: PBO:0066441
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"reticulophagy regulator family member 2","termid":"PBO:0066441"}


id: MONDO:0000574
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete CD45 deficiency (obsolete MONDO:0000574)","termid":"MONDO:0000574","xrefs":{"Monarch":{"xref_id":"0000574"}}}


id: PBO:0080787
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"XK related, Y-linked pseudogene 7","termid":"PBO:0080787"}


id: GO:0036312
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a regulatory subunit of phosphatidylinositol 3-kinase. The regulatory subunit associates with the catalytic subunit to regulate both its activity and subcellular location.","definition_xrefs":["GOC:bf","PMID:20505341"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylinositol 3-kinase binding","termid":"GO:0043548"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"phosphatidylinositol 3-kinase regulatory subunit binding","synonyms":[{"name":"PI3K regulatory subunit binding","type":"exact"},{"name":"p85 binding","type":"related"}],"termid":"GO:0036312"}


id: PBO:0077098
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translocase of inner mitochondrial membrane 8A pseudogene 1","termid":"PBO:0077098"}


id: PATO:0000787
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000787 neurobehavioral function value (obsolete PATO:0000787)","termid":"PATO:0000787"}


id: GO:0016403
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N(G),N(G)-dimethyl-L-arginine + H2O = dimethylamine + L-citrulline.","definition_xrefs":["EC:3.5.3.18"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines","termid":"GO:0016813"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016810","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"dimethylargininase activity","secondary_identifiers":["Reactome:R-HSA-5693373","MetaCyc:DIMETHYLARGININASE-RXN","RHEA:17305"],"synonyms":[{"name":"N(G),N(G)-dimethylarginine dimethylaminohydrolase activity","type":"related"},{"name":"NG,NG-dimethyl-L-arginine dimethylamidohydrolase activity","type":"related"},{"name":"NG,NG-dimethylarginine dimethylaminohydrolase activity","type":"related"},{"name":"dimethylarginine dimethylaminohydrolase activity","type":"related"}],"termid":"GO:0016403"}


id: GO:0045896
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A cell cycle process that modulates the frequency, rate or extent of transcription that occurs during the mitotic cell cycle.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transcription during mitotic cell cycle (obsolete GO:0045896)","synonyms":[{"name":"mitotic regulation of transcription","type":"exact"},{"name":"regulation of transcription, mitotic","type":"exact"}],"termid":"GO:0045896"}


id: GO:0097181
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A heterodimeric protein complex that contains protein C inhibitor (SERPINA5) and coagulation factor V (F5); formation of the complex inhibits the serine protease activity of coagulation factor V.","definition_xrefs":["GOC:ans","PMID:6323392"],"direct_ancestors":[{"relation_name":"is_a","term_name":"serine protease inhibitor complex","termid":"GO:0097180"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"protein C inhibitor-coagulation factor V complex","synonyms":[{"name":"PCI-coagulation factor V complex","type":"exact"},{"name":"SERPINA5-coagulation factor V complex","type":"exact"},{"name":"plasma serine protease inhibitor-coagulation factor V complex","type":"exact"},{"name":"protein C inhibitor-F5 complex","type":"exact"},{"name":"serpin A5-coagulation factor V complex","type":"exact"}],"termid":"GO:0097181"}


id: PBO:0084709
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial inner membrane carnitine transporter; required for carnitine-dependent transport of acetyl-CoA from peroxisomes to mitochondria during fatty acid beta-oxidation; human homolog SLC25A20 complements yeast null mutant","termid":"PBO:0084709"}


id: PBO:0059418
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein S36 pseudogene 4","termid":"PBO:0059418"}


id: PBO:0085121
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Nucleolar protein; essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis; constituent of 66S pre-ribosomal particles; contains four RNA recognition motifs (RRMs); human ortholog RBM28 implicated in ANE syndrome","termid":"PBO:0085121"}


id: PBO:0068247
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 28S ribosomal 4","termid":"PBO:0068247"}


id: GO:0031313
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The component of an endosome membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.","definition_xrefs":["GOC:mah","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extrinsic component of organelle membrane","termid":"GO:0031312"},{"relation_name":"part_of","term_name":"endosome membrane","termid":"GO:0010008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005768"}],"interesting_parent_ids":["GO:0005737","GO:0005768","GO:0031410","GO:0005575"],"is_obsolete":false,"name":"extrinsic component of endosome membrane","synonyms":[{"name":"extrinsic to endosome membrane","type":"narrow"}],"termid":"GO:0031313"}


id: PR:O94428
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mug168 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94428"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 168 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC660.09","synonyms":[{"name":"Spom972h-mug168","type":"exact"}],"termid":"PR:O94428"}


id: GO:0016078
data:
  {"annotated_genes":["SJAG_04153","SJAG_01521","SJAG_02275","SJAG_00854","SJAG_01818","SJAG_01702","SJAG_03276","SJAG_16455","SJAG_04006","SJAG_03984","SJAG_04824","SJAG_03745","SJAG_01176","SJAG_03179","SJAG_04321","SJAG_04818","SJAG_01191","SJAG_04084"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95300,115931,90636],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0180037"},{"annotations":[102427,106837,72096,97580,115838,70713,78038,75434,99951,72883,88700,116277,107828,71273,71643],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071038"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of tRNA, transfer RNA, a class of relatively small RNA molecules responsible for mediating the insertion of amino acids into the sequence of nascent polypeptide chains during protein synthesis.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA metabolic process","termid":"GO:0006399"},{"relation_name":"is_a","term_name":"RNA catabolic process","termid":"GO:0006401"}],"gene_count":18,"genes_by_uniquename":{"SJAG_00854":null,"SJAG_01176":null,"SJAG_01191":null,"SJAG_01521":null,"SJAG_01702":null,"SJAG_01818":null,"SJAG_02275":null,"SJAG_03179":null,"SJAG_03276":null,"SJAG_03745":null,"SJAG_03984":null,"SJAG_04006":null,"SJAG_04084":null,"SJAG_04153":null,"SJAG_04321":null,"SJAG_04818":null,"SJAG_04824":null,"SJAG_16455":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006399"}],"interesting_parent_ids":["GO:0006399","GO:0008150"],"is_obsolete":false,"name":"tRNA decay","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-9708296"],"synonyms":[{"name":"tRNA breakdown","type":"exact"},{"name":"tRNA catabolic process","type":"exact"},{"name":"tRNA catabolism","type":"exact"},{"name":"tRNA degradation","type":"exact"}],"termid":"GO:0016078","terms_by_termid":{"GO:0071038":null,"GO:0180037":null}}


id: PBO:0074482
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SET and MYND domain containing 1","termid":"PBO:0074482"}


id: GO:0030017
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The repeating unit of a myofibril in a muscle cell, composed of an array of overlapping thick and thin filaments between two adjacent Z discs.","definition_xrefs":["ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"myofibril","termid":"GO:0030016"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"sarcomere","secondary_identifiers":["Wikipedia:Sarcomere"],"termid":"GO:0030017"}


id: PBO:0031190
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-delaminated_cell_wall_during_vegetative_growth","termid":"PBO:0031190"}


id: GO:0106001
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Uptake of hexoses, notably D-glucose, fructose, and galactose, into the blood by absorption from the small intestine.","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intestinal absorption","termid":"GO:0050892"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"intestinal hexose absorption","secondary_identifiers":["Reactome:R-HSA-8981373"],"termid":"GO:0106001"}


id: GO:0034670
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a motile cell or organism in response to the presence of arachidonic acid.","definition_xrefs":["GOC:go_curators","PMID:18202452"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chemotaxis","termid":"GO:0006935"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"chemotaxis to arachidonate","synonyms":[{"name":"chemotaxis to arachidonic acid","type":"exact"}],"termid":"GO:0034670"}


id: MOD:00431
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"Covalent modification of, or a change resulting in an alteration of the measured molecular mass of, a peptide or protein amino acid residue with a secondary loss of a neutral molecular fragment.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification categorized by amino acid modified","termid":"MOD:01157"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"modified residue with a secondary neutral loss","synonyms":[{"name":"NLModRes","type":"exact"}],"termid":"MOD:00431"}


id: PBO:0050698
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HSPA12A antisense RNA 1","termid":"PBO:0050698"}


id: GO:0030690
data:
  {"annotated_genes":["SJAG_04346","SJAG_01494","SJAG_01275"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[73249,80479,98209],"is_not":false,"summary":null,"term":"GO:0030690"}]},"cv_name":"cellular_component","definition":"A heterodimer associated with 90S and 66S preribosomes. Predominantly, but not exclusively, nucleolar; involved in ribosomal large subunit biogenesis.","definition_xrefs":["PMID:12446671"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Noc complex","termid":"GO:0030689"},{"relation_name":"part_of","term_name":"90S preribosome","termid":"GO:0030686"},{"relation_name":"part_of","term_name":"preribosome, large subunit precursor","termid":"GO:0030687"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01275":null,"SJAG_01494":null,"SJAG_04346":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"part_of","termid":"GO:0030684"},{"rel_name":"part_of","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005634","GO:0005575","GO:0030684"],"is_obsolete":false,"name":"Noc1p-Noc2p complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0030690","terms_by_termid":{"GO:0030690":null}}


id: PBO:0088722
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA demethylase","termid":"PBO:0088722"}


id: PBO:0046889
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 13 member A","termid":"PBO:0046889"}


id: PBO:0086962
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Regulator of the Fps1p glycerol channel; under nonstress conditions, binds to Fps1p to positively regulate glycerol transport; under osmotic stress, multiple phosphorylation by Hog1p causes Ask10p to dissociate from Fps1p; forms homodimers and heterodimerizes with paralog Rgc1p; phosphorylated in response to oxidative stress; has a role in destruction of Ssn8p; associates with RNA polymerase II holoenzyme","termid":"PBO:0086962"}


id: PBO:0051052
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy diversity 2-15","termid":"PBO:0051052"}


id: FYPO:0000260
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A gene expression phenotype in which regulation of transcription during the G1/S phase of the cell cycle is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcription regulation phenotype during vegetative growth","termid":"FYPO:0001335"},{"relation_name":"is_a","term_name":"abnormal mitotic cell cycle process","termid":"FYPO:0002737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000631","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"abnormal G1/S phase transcription","synonyms":[{"name":"abnormal G1/S phase transcription during mitotic cell cycle","type":"exact"},{"name":"abnormal G1/S phase transcription during vegetative growth","type":"exact"},{"name":"abnormal regulation of transcription involved in G1/S phase of mitotic cell cycle","type":"exact"},{"name":"periodic cell-cycle expression, abolished","type":"related"}],"termid":"FYPO:0000260"}


id: PBO:0061236
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NOP16 nucleolar protein","termid":"PBO:0061236"}


id: PBO:0090025
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial [4Fe-4S] cluster transfer protein Nfu1","termid":"PBO:0090025"}


id: PATO:0000363
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000363 away (obsolete PATO:0000363)","termid":"PATO:0000363"}


id: PBO:0046782
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EYA2 antisense RNA 1","termid":"PBO:0046782"}


id: PBO:0063747
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PHB1 pseudogene 12","termid":"PBO:0063747"}


id: PBO:0000435
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DYRK subfamily","termid":"PBO:0000435"}


id: PBO:0068513
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 104, pseudogene","termid":"PBO:0068513"}


id: PBO:0110343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CANT1 pseudogene 1","termid":"PBO:0110343"}


id: PBO:0091881
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"class I glutamine amidotransferase family protein","termid":"PBO:0091881"}


id: MONDO:0007302
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cervical hypertrichosis with underlying kyphoscoliosis","secondary_identifiers":["MEDGEN:349343","UMLS:C1861695","OMIM:117850","MESH:C566142"],"synonyms":[{"name":"cervical hypertrichosis with underlying kyphoscoliosis","type":"exact"},{"name":"hypertrichosis, posterior cervical, with underlying kyphoscoliosis","type":"related"}],"termid":"MONDO:0007302","xrefs":{"Monarch":{"xref_id":"0007302"}}}


id: PBO:0055764
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lncRNA TGF-beta/SMAD3 pathway interacting","termid":"PBO:0055764"}


id: PBO:0072147
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S15a pseudogene 24","termid":"PBO:0072147"}


id: PBO:0064625
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inorganic pyrophosphatase 1","termid":"PBO:0064625"}


id: PBO:0001254
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DUF1640 family protein","termid":"PBO:0001254"}


id: GO:0047978
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: hexadecanol + NAD+ = hexadecanal + NADH.","definition_xrefs":["EC:1.1.1.164","MetaCyc:HEXADECANOL-DEHYDROGENASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alcohol dehydrogenase (NAD+) activity","termid":"GO:0004022"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"hexadecanol dehydrogenase (NAD+) activity","secondary_identifiers":["RHEA:22056"],"synonyms":[{"name":"hexadecanol dehydrogenase activity","type":"broad"},{"name":"hexadecanol:NAD+ oxidoreductase activity","type":"related"}],"termid":"GO:0047978"}


id: PBO:0077345
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 86B","termid":"PBO:0077345"}


id: MONDO:0957815
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"developmental delay with or without epilepsy","secondary_identifiers":["UMLS:C5882702","MEDGEN:1848555","OMIM:620540"],"termid":"MONDO:0957815","xrefs":{"Monarch":{"xref_id":"0957815"}}}


id: PBO:0038494
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP binding cassette subfamily C member 5","termid":"PBO:0038494"}


id: PBO:0031869
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dopey family protein Dop1","termid":"PBO:0031869"}


id: GO:0018793
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 3,5-dibromo-4-hydroxybenzoate + H+ = CO2 + 2,6-dibromophenol.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 3,5-dibromo-4-hydroxybenzoate decarboxylase activity (obsolete GO:0018793)","termid":"GO:0018793"}


id: GO:0075107
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the symbiont activates, maintains or increases the frequency, rate or extent of the host adenylate cyclase activity, which involves catalysis of the reaction: ATP = 3',5'-cyclic AMP + diphosphate. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation by symbiont of host adenylate cyclase activity (obsolete GO:0075107)","synonyms":[{"name":"positive regulation by symbiont of host 3',5'-cyclic AMP synthetase activity","type":"exact"},{"name":"positive regulation by symbiont of host ATP diphosphate-lyase (cyclizing ; 3',5'-cyclic-AMP-forming) activity","type":"exact"},{"name":"positive regulation by symbiont of host adenyl cyclase activity","type":"exact"},{"name":"positive regulation by symbiont of host adenylyl cyclase activity","type":"exact"},{"name":"positive regulation by symbiont of host adenylylcyclase activity","type":"exact"}],"termid":"GO:0075107"}


id: MONDO:0010849
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"diffuse palmoplantar keratoderma","termid":"MONDO:0017666"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"palmoplantar keratoderma, Bothnian type","secondary_identifiers":["DOID:0111707","MEDGEN:325011","Orphanet:2337","UMLS:C1838359","GARD:1862","OMIM:600231"],"synonyms":[{"name":"PPKB","type":"related"},{"name":"palmoplantar keratoderma, Bothnian type","type":"exact"}],"termid":"MONDO:0010849","xrefs":{"Monarch":{"xref_id":"0010849"}}}


id: GO:0030667
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding a secretory granule.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic vesicle membrane","termid":"GO:0030659"},{"relation_name":"is_a","term_name":"bounding membrane of organelle","termid":"GO:0098588"},{"relation_name":"part_of","term_name":"secretory granule","termid":"GO:0030141"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0031410"],"is_obsolete":false,"name":"secretory granule membrane","synonyms":[{"name":"secretory vesicle membrane","type":"broad"}],"termid":"GO:0030667"}


id: GO:0035939
data:
  {"annotated_genes":["SJAG_05214"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[96398],"is_not":false,"summary":null,"term":"GO:0035939"}]},"cv_name":"molecular_function","definition":"Binding to a microsatellite, a repeat_region in DNA containing repeat units (2 to 4 base pairs) that is repeated multiple times in tandem.","definition_xrefs":["PMID:21290414","SO:0000289","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"satellite DNA binding","termid":"GO:0003696"}],"gene_count":1,"genes_by_uniquename":{"SJAG_05214":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003677"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003677","GO:0003674"],"is_obsolete":false,"name":"microsatellite binding","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"VNTR binding","type":"exact"},{"name":"microsatellite DNA binding","type":"exact"},{"name":"variable number tandem repeat binding","type":"exact"}],"termid":"GO:0035939","terms_by_termid":{"GO:0035939":null}}


id: GO:0046726
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process where the infecting virus increases the levels of viral proteins in a cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation by virus of viral protein levels in host cell","termid":"GO:0046719"},{"relation_name":"is_a","term_name":"positive regulation of viral process","termid":"GO:0048524"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation by virus of viral protein levels in host cell","synonyms":[{"name":"activation of viral protein levels in host cell","type":"narrow"},{"name":"positive regulation of viral protein levels","type":"exact"},{"name":"stimulation of viral protein levels in host cell","type":"narrow"},{"name":"up regulation of viral protein levels in host cell","type":"exact"},{"name":"up-regulation of viral protein levels in host cell","type":"exact"},{"name":"upregulation of viral protein levels in host cell","type":"exact"}],"termid":"GO:0046726"}


id: PBO:0073037
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SCUBE1 antisense RNA 1","termid":"PBO:0073037"}


id: PATO:0001344
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A S. cerevisiae mating type cells that secrete a pheromone that stimulates a haploids.","definition_xrefs":["MGED:MGED"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Saccharomyces cerevisiae mating type","termid":"PATO:0001342"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha mating type (yeast)","synonyms":[{"name":"alpha","type":"broad"}],"termid":"PATO:0001344"}


id: MONDO:0019311
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Woolly hair nevus (WHN) is a rare non-familial hair anomaly characterized by kinky, tightly coiled, and hypopigmented fine hair with an average diameter of 0.5 cm, noted, since birth or during the first two years of life, in a localized circumscribed distribution on the scalp. Occasionally, WHN grows in areas observed to be alopecic in the neonatal period. WHN can be associated with features like ocular defects (persistent pupillary membrane, retinal defects), precocious puberty, and epidermal nevi.","definition_xrefs":["Orphanet:79414"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nevus, epidermal","termid":"MONDO:0008093"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"wooly hair nevus","secondary_identifiers":["UMLS:C0343114","MEDGEN:575391","GARD:13025","SCTID:239124001"],"synonyms":[{"name":"wooly hair nevus","type":"exact"}],"termid":"MONDO:0019311","xrefs":{"Monarch":{"xref_id":"0019311"}}}


id: PATO:0000697
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000697 relative texture value (obsolete PATO:0000697)","termid":"PATO:0000697"}


id: GO:0071545
data:
  {"annotated_genes":["SJAG_04870","SJAG_00244"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89036,115432],"is_not":false,"summary":null,"term":"GO:0071545"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of an inositol phosphate, 1,2,3,4,5,6-cyclohexanehexol, with one or more phosphate groups attached.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inositol phosphate metabolic process","termid":"GO:0043647"},{"relation_name":"is_a","term_name":"polyol catabolic process","termid":"GO:0046174"},{"relation_name":"is_a","term_name":"organophosphate catabolic process","termid":"GO:0046434"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00244":null,"SJAG_04870":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"inositol phosphate catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"inositol phosphate breakdown","type":"exact"},{"name":"inositol phosphate catabolism","type":"exact"},{"name":"inositol phosphate degradation","type":"exact"},{"name":"myo-inositol phosphate catabolic process","type":"narrow"}],"termid":"GO:0071545","terms_by_termid":{"GO:0071545":null}}


id: MONDO:0001946
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Abnormally high level of estrogen.","definition_xrefs":["NCIT:P378"],"gene_count":0,"genotype_count":0,"name":"obsolete hyperestrogenism (obsolete MONDO:0001946)","secondary_identifiers":["SCTID:37295009","ICD10WHO:E28.0","NANDO:2200379","ICD9:256.0","ICD10CM:E28.0","DOID:14336"],"synonyms":[{"name":"estrogen Excess","type":"related"},{"name":"hyperestrogenism","type":"exact"}],"termid":"MONDO:0001946","xrefs":{"Monarch":{"xref_id":"0001946"}}}


id: GO:0106057
data:
  {"annotated_genes":["SJAG_02858","SJAG_03799"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[101333,116516],"is_not":false,"summary":null,"term":"GO:0106057"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of calcineurin-mediated signaling.","definition_xrefs":["PMID:25081204"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of calcium-mediated signaling","termid":"GO:0050849"},{"relation_name":"is_a","term_name":"regulation of calcineurin-mediated signaling","termid":"GO:0106056"},{"relation_name":"negatively_regulates","term_name":"calcineurin-mediated signaling","termid":"GO:0097720"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02858":null,"SJAG_03799":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of calcineurin-mediated signaling","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0106057","terms_by_termid":{"GO:0106057":null}}


id: PBO:0004417
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear distribution protein NUDC homolog","termid":"PBO:0004417"}


id: MONDO:0018945
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A form of neuroacanthocytosis and is characterized clinically by a Huntington's disease-like phenotype with an involuntary hyperkinetic movement disorder, psychiatric manifestations and cognitive alterations, and biochemically by absence of the Kx antigen and by weak expression of the Kell antigens.","definition_xrefs":["Orphanet:59306"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"hemolytic anemia","termid":"MONDO:0003664"},{"relation_name":"excluded_subClassOf","term_name":"familial hemolytic anemia","termid":"MONDO:0003689"},{"relation_name":"excluded_subClassOf","term_name":"obsolete syndrome associated with dilated cardiomyopathy (obsolete MONDO:0016337)","termid":"MONDO:0016337"},{"relation_name":"is_a","term_name":"neuroacanthocytosis","termid":"MONDO:0016987"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0002039"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0002039"],"is_obsolete":false,"name":"McLeod neuroacanthocytosis syndrome","secondary_identifiers":["MEDGEN:140765","GARD:10731","OMIM:300842","SCTID:234411007","UMLS:C0398568","ICD9:289.89","NANDO:1200015","DOID:0112107","MESH:C564038","icd11.foundation:1749275115","HGNC:12811"],"synonyms":[{"name":"MCLDS","type":"related"},{"name":"MLS","type":"exact"},{"name":"McLeod phenotype","type":"related"},{"name":"McLeod syndrome","type":"exact"},{"name":"McLeod syndrome with chronic granulomatous disease","type":"related"},{"name":"X-linked McLeod syndrome","type":"exact"},{"name":"mcleod syndrome with or without chronic granulomatous disease","type":"exact"},{"name":"neuroacanthocytosis, McLeod type","type":"related"}],"termid":"MONDO:0018945","xrefs":{"Monarch":{"xref_id":"0018945"}}}


id: MONDO:0013350
data:
  {"annotated_genes":["SJAG_02658"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87383],"is_not":false,"summary":null,"term":"MONDO:0013350"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial DNA depletion syndrome","termid":"MONDO:0018158"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02658":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004069"],"is_obsolete":false,"name":"mitochondrial DNA depletion syndrome 4b","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C3150914","MEDGEN:462264","DOID:0080123","OMIM:613662"],"synonyms":[{"name":"MTDPS4B","type":"related"},{"name":"Mngie, Polg-related","type":"related"},{"name":"mitochondrial DNA depletion syndrome 4B (MNGIE type)","type":"related"},{"name":"mitochondrial DNA depletion syndrome type 4b","type":"exact"},{"name":"mitochondrial neurogastrointestinal encephalopathy syndrome, Polg-related","type":"related"}],"termid":"MONDO:0013350","terms_by_termid":{"MONDO:0013350":null},"xrefs":{"Monarch":{"xref_id":"0013350"}}}


id: PBO:0087528
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of NuA4, an essential histone acetyltransferase complex; positions Piccolo NuA4 for efficient acetylation of histone H4 or histone H2A; relocalizes to the cytosol in response to hypoxia; similar to human tumor suppressor ING1 and its isoforms ING4 and ING5","termid":"PBO:0087528"}


id: FYPO:0007095
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the actin fusion focus is increased.","definition_xrefs":["PMID:31495586","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to shmoo tip","termid":"FYPO:0004802"},{"relation_name":"is_a","term_name":"abnormal protein localization to actin fusion focus","termid":"FYPO:0006503"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"increased protein localization to actin fusion focus","synonyms":[{"name":"increased protein localisation to actin fusion focus","type":"exact"}],"termid":"FYPO:0007095"}


id: PBO:0040319
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase F1 subunit gamma pseudogene 1","termid":"PBO:0040319"}


id: MONDO:1012758
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Junctional epidermolysis bullosa that occurs in cattle due to a mutation in the ITGB4 gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"junctionalis epidermolysis bullosa, cattle","termid":"MONDO:1011547"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"junctional epidermolysis bullosa, ITGB4-related, cattle","secondary_identifiers":["OMIA:001948-9913"],"synonyms":[{"name":"epidermolysis bullosa, junctionalis, ITGB4-related, cattle","type":"exact"}],"termid":"MONDO:1012758","xrefs":{"Monarch":{"xref_id":"1012758"}}}


id: PBO:0070505
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L6 pseudogene 4","termid":"PBO:0070505"}


id: GO:1903797
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of inorganic anion transmembrane transport.","definition_xrefs":["PMID:11336802","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of transmembrane transport","termid":"GO:0034764"},{"relation_name":"is_a","term_name":"regulation of inorganic anion transmembrane transport","termid":"GO:1903795"},{"relation_name":"positively_regulates","term_name":"inorganic anion transmembrane transport","termid":"GO:0098661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0055085"],"is_obsolete":false,"name":"positive regulation of inorganic anion transmembrane transport","synonyms":[{"name":"activation of inorganic anion membrane transport","type":"narrow"},{"name":"activation of inorganic anion transmembrane transport","type":"narrow"},{"name":"activation of transmembrane inorganic anion transport","type":"narrow"},{"name":"positive regulation of inorganic anion membrane transport","type":"exact"},{"name":"positive regulation of transmembrane inorganic anion transport","type":"exact"},{"name":"up regulation of inorganic anion membrane transport","type":"exact"},{"name":"up regulation of inorganic anion transmembrane transport","type":"exact"},{"name":"up regulation of transmembrane inorganic anion transport","type":"exact"},{"name":"up-regulation of inorganic anion membrane transport","type":"exact"},{"name":"up-regulation of inorganic anion transmembrane transport","type":"exact"},{"name":"up-regulation of transmembrane inorganic anion transport","type":"exact"},{"name":"upregulation of inorganic anion membrane transport","type":"exact"},{"name":"upregulation of inorganic anion transmembrane transport","type":"exact"},{"name":"upregulation of transmembrane inorganic anion transport","type":"exact"}],"termid":"GO:1903797"}


id: MONDO:0012546
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any nephrotic syndrome in which the cause of the disease is a mutation in the PLCE1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial idiopathic steroid-resistant nephrotic syndrome","termid":"MONDO:0019006"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"nephrotic syndrome, type 3","secondary_identifiers":["UMLS:C1853124","GARD:15495","DOID:0080382","MEDGEN:377831","OMIM:610725"],"synonyms":[{"name":"NPHS3","type":"related"},{"name":"PLCE1 nephrotic syndrome","type":"exact"},{"name":"nephrotic syndrome caused by mutation in PLCE1","type":"exact"},{"name":"nephrotic syndrome, early-onset, type 3","type":"related"},{"name":"nephrotic syndrome, type 3","type":"exact"}],"termid":"MONDO:0012546","xrefs":{"Monarch":{"xref_id":"0012546"}}}


id: GO:0042047
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of the W-molybdopterin cofactor, essential for the catalytic activity of some enzymes. The cofactor consists of a mononuclear tungsten ion (W) coordinated by one or two molybdopterin ligands.","definition_xrefs":["ISSN:09498257"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molybdopterin cofactor biosynthetic process","termid":"GO:0032324"},{"relation_name":"is_a","term_name":"W-molybdopterin cofactor metabolic process","termid":"GO:0042046"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"W-molybdopterin cofactor biosynthetic process","synonyms":[{"name":"Moco biosynthesis","type":"broad"},{"name":"Moco biosynthetic process","type":"broad"},{"name":"W-molybdopterin cofactor anabolism","type":"exact"},{"name":"W-molybdopterin cofactor biosynthesis","type":"exact"},{"name":"W-molybdopterin cofactor formation","type":"exact"},{"name":"W-molybdopterin cofactor synthesis","type":"exact"}],"termid":"GO:0042047"}


id: GO:0030350
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an iron-responsive element, a regulatory sequence found in the 5'- and 3'-untranslated regions of mRNAs encoding many iron-binding proteins.","definition_xrefs":["PMID:3198610","PMID:8710843"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA binding","termid":"GO:0003729"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003723"}],"interesting_parent_ids":["GO:0003723","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"iron-responsive element binding","synonyms":[{"name":"IRE binding","type":"exact"}],"termid":"GO:0030350"}


id: GO:1901958
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cutin biosynthetic process.","definition_xrefs":["GOC:tb","GOC:TermGenie","PMID:23243127"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of macromolecule biosynthetic process","termid":"GO:0010558"},{"relation_name":"is_a","term_name":"regulation of cutin biosynthetic process","termid":"GO:1901957"},{"relation_name":"negatively_regulates","term_name":"cutin biosynthetic process","termid":"GO:0010143"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cutin biosynthetic process","synonyms":[{"name":"down regulation of cutin anabolism","type":"exact"},{"name":"down regulation of cutin biosynthesis","type":"exact"},{"name":"down regulation of cutin biosynthetic process","type":"exact"},{"name":"down regulation of cutin formation","type":"exact"},{"name":"down regulation of cutin synthesis","type":"exact"},{"name":"down-regulation of cutin anabolism","type":"exact"},{"name":"down-regulation of cutin biosynthesis","type":"exact"},{"name":"down-regulation of cutin biosynthetic process","type":"exact"},{"name":"down-regulation of cutin formation","type":"exact"},{"name":"down-regulation of cutin synthesis","type":"exact"},{"name":"downregulation of cutin anabolism","type":"exact"},{"name":"downregulation of cutin biosynthesis","type":"exact"},{"name":"downregulation of cutin biosynthetic process","type":"exact"},{"name":"downregulation of cutin formation","type":"exact"},{"name":"downregulation of cutin synthesis","type":"exact"},{"name":"inhibition of cutin anabolism","type":"exact"},{"name":"inhibition of cutin biosynthesis","type":"exact"},{"name":"inhibition of cutin biosynthetic process","type":"narrow"},{"name":"inhibition of cutin formation","type":"exact"},{"name":"inhibition of cutin synthesis","type":"exact"},{"name":"negative regulation of cutin anabolism","type":"exact"},{"name":"negative regulation of cutin biosynthesis","type":"exact"},{"name":"negative regulation of cutin formation","type":"exact"},{"name":"negative regulation of cutin synthesis","type":"exact"}],"termid":"GO:1901958"}


id: PBO:0079728
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBTF like 5 (pseudogene)","termid":"PBO:0079728"}


id: PBO:0065984
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retinoic acid early transcript 1K pseudogene","termid":"PBO:0065984"}


id: GO:0034079
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of butanediol; the biologically relevant isomer is 2,3-butanediol, CH3CH(OH)CH(OH)CH3.","definition_xrefs":["ISBN:0911910123","MetaCyc:P125-PWY","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"butanediol metabolic process","termid":"GO:0034077"},{"relation_name":"is_a","term_name":"glycol biosynthetic process","termid":"GO:0042845"},{"relation_name":"is_a","term_name":"secondary alcohol biosynthetic process","termid":"GO:1902653"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"butanediol biosynthetic process","synonyms":[{"name":"butanediol anabolism","type":"exact"},{"name":"butanediol biosynthesis","type":"exact"},{"name":"butanediol formation","type":"exact"},{"name":"butanediol synthesis","type":"exact"},{"name":"butylene glycol biosynthesis","type":"exact"},{"name":"butylene glycol biosynthetic process","type":"exact"}],"termid":"GO:0034079"}


id: FYPO:0005636
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein from kinetochores to the spindle begins later than normal during the first meiotic nuclear division.","definition_xrefs":["PomBase:mah","PMID:21920317"],"direct_ancestors":[{"relation_name":"is_a","term_name":"delayed onset of protein localization to spindle during meiosis I","termid":"FYPO:0005635"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"delayed onset of protein localization from kinetochore to spindle during meiosis I","synonyms":[{"name":"delayed onset of protein localisation from kinetochore to spindle during meiosis I","type":"exact"},{"name":"delayed onset of protein localization from kinetochore to meiosis I spindle","type":"exact"},{"name":"delayed onset of protein localization from kinetochore to meiotic spindle during meiosis I","type":"exact"},{"name":"delayed onset of protein localization from kinetochore to spindle during first meiotic nuclear division","type":"exact"},{"name":"delayed onset of protein movement from kinetochore to spindle during meiosis I","type":"related"},{"name":"delayed protein localization from kinetochore to spindle during meiosis I","type":"exact"},{"name":"delayed protein localization to meiotic spindle from kinetochore during meiosis I","type":"exact"}],"termid":"FYPO:0005636"}


id: MONDO:0017929
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Congenital achiasma is a rare, genetic, non-syndromic cranial nerve and nuclear aplasia malformation characterized by the congenital absence of the optic chiasm, resulting from the failure of the optic nerve fibers to cross over and decussate to the contralateral hemisphere, leading to decreased vision, strabismus and congenital nystagmus in infancy.","definition_xrefs":["Orphanet:324353"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital nervous system disorder","termid":"MONDO:0002320"},{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"congenital achiasma","secondary_identifiers":["SCTID:734031008","GARD:21438","UMLS:C4518345","MEDGEN:1392790","ICD10CM:H47.4"],"termid":"MONDO:0017929","xrefs":{"Monarch":{"xref_id":"0017929"}}}


id: GO:0047795
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: trans-cyclohexane-1,2-diol + NAD+ = 2-hydroxycyclohexan-1-one + NADH.","definition_xrefs":["EC:1.1.1.174","MetaCyc:CYCLOHEXANE-12-DIOL-DEHYDROGENASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"cyclohexane-1,2-diol dehydrogenase activity","secondary_identifiers":["RHEA:18141"],"synonyms":[{"name":"trans-cyclohexane-1,2-diol:NAD+ 1-oxidoreductase activity","type":"related"}],"termid":"GO:0047795"}


id: GO:0060621
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of cholesterol import. Cholesterol import is the directed movement of cholesterol into a cell or organelle.","definition_xrefs":["GOC:tb","GOC:dph","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cholesterol transport","termid":"GO:0032375"},{"relation_name":"is_a","term_name":"regulation of cholesterol import","termid":"GO:0060620"},{"relation_name":"negatively_regulates","term_name":"cholesterol import","termid":"GO:0070508"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"negative regulation of cholesterol import","termid":"GO:0060621"}


id: PBO:0001311
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human CLN3","termid":"PBO:0001311"}


id: PBO:0114277
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER membrane protein, conserved in fungi plants and protozoa, glycosyl transferase family","termid":"PBO:0114277"}


id: PBO:0053172
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"left-right determination factor 3, pseudogene","termid":"PBO:0053172"}


id: PBO:0004598
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-MYND type","termid":"PBO:0004598"}


id: PBO:0076372
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trace amine associated receptor 9","termid":"PBO:0076372"}


id: GO:0018689
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: (1/2)-unsubstituted naphthalenoid-(2/1)-sulfonate + 2 H+ + 2 e- + O2 = 1,2-dihydroxynaphthalene derivative + HSO3(-). Substrates include naphthalene-1,6-disulfonate (forms 1,2-dihydroxynaphthalene-6-sulfonate), naphthalene-1-sulfonate (forms 1,2-dihydroxynaphthalene), naphthalene-2,6-disulfonate (forms 1,2-dihydroxynaphthalene-6-sulfonate) and naphthalene-2-sulfonate (forms 1,2-dihydroxynaphthalene).","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete naphthalene disulfonate 1,2-dioxygenase activity (obsolete GO:0018689)","synonyms":[{"name":"naphthalene disulphonate 1,2-dioxygenase activity","type":"exact"}],"termid":"GO:0018689"}


id: MONDO:0006459
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A thymic epithelial neoplasm characterized by the presence of expanded areas which resemble the normal thymic cortex. The neoplastic epithelial cells are small and scant and there is a dense T-lymphocytic component present. Areas of medullary differentiation with or without Hassall's corpuscles are also present. It may be associated with myasthenia gravis, pure red cell aplasia, and hypogammaglobulinemia. It has a low grade malignant potential. The majority of cases occur in the anterior mediastinum as Masaoka stage I tumors. A minority of the cases occur as stage II tumors.","definition_xrefs":["NCIT:C6887"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thymoma type B","termid":"MONDO:0016974"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"thymoma type B1","secondary_identifiers":["EFO:1000584","DOID:6917","MEDGEN:224761","UMLS:C1266094","ICDO:8583/1"],"synonyms":[{"name":"lymphocyte-predominant thymoma","type":"exact"},{"name":"lymphocyte-rich thymoma","type":"exact"},{"name":"organoid thymoma","type":"exact"},{"name":"predominantly cortical thymoma","type":"exact"},{"name":"thymoma type B1","type":"exact"},{"name":"thymoma, organoid","type":"exact"}],"termid":"MONDO:0006459","xrefs":{"Monarch":{"xref_id":"0006459"}}}


id: GO:0004730
data:
  {"annotated_genes":["SJAG_03213"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[79994],"is_not":false,"summary":null,"term":"GO:0004730"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: D-ribose 5-phosphate + uracil = H2O + pseudouridine 5'-phosphate.","definition_xrefs":["EC:4.2.1.70","RHEA:18337"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03213":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"pseudouridylate synthase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:RXN0-5398","KEGG_REACTION:R01055"],"synonyms":[{"name":"5-ribosyluracil 5-phosphate synthetase activity","type":"related"},{"name":"pseudouridine monophosphate synthase activity","type":"exact"},{"name":"pseudouridine monophosphate synthetase activity","type":"related"},{"name":"pseudouridine-5'-phosphate glycosidase activity","type":"exact"},{"name":"pseudouridylate synthetase activity","type":"related"},{"name":"pseudouridylic acid synthetase activity","type":"related"},{"name":"psiUMP synthetase activity","type":"related"},{"name":"uracil hydro-lyase (adding D-ribose 5-phosphate)","type":"related"},{"name":"uracil hydro-lyase (adding D-ribose 5-phosphate; pseudouridine-5'-phosphate-forming)","type":"related"},{"name":"uracil hydrolyase activity","type":"related"}],"termid":"GO:0004730","terms_by_termid":{"GO:0004730":null}}


id: PBO:0045888
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation elongation factor 1 gamma","termid":"PBO:0045888"}


id: GO:0008859
data:
  {"annotated_genes":["SJAG_06586"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[114817],"is_not":false,"summary":null,"term":"GO:0008859"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: RNA + H2O = 5'-phosphomononucleotides. Cleaves RNA in the 3' to 5' direction.","definition_xrefs":["EC:3.1.13.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"3'-5'-RNA exonuclease activity","termid":"GO:0000175"}],"gene_count":1,"genes_by_uniquename":{"SJAG_06586":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0004527"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016788","GO:0016787","GO:0003824","GO:0140098","GO:0003674","GO:0004527"],"is_obsolete":false,"name":"exoribonuclease II activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:3.1.13.1-RXN"],"synonyms":[{"name":"5'-exoribonuclease activity","type":"related"},{"name":"BN ribonuclease activity","type":"related"},{"name":"Escherichia coli exo-RNase II","type":"related"},{"name":"RNase II","type":"related"},{"name":"RNase II activity","type":"exact"},{"name":"ribonuclease II activity","type":"related"},{"name":"ribonuclease Q","type":"related"}],"termid":"GO:0008859","terms_by_termid":{"GO:0008859":null}}


id: MONDO:0002259
data:
  {"annotated_genes":["SJAG_04114","SJAG_03418","SJAG_03077","SJAG_04337","SJAG_04398","SJAG_02339","SJAG_04950","SJAG_04738","SJAG_02690","SJAG_02954","SJAG_00377","SJAG_04703","SJAG_03720","SJAG_00103","SJAG_04110","SJAG_02294","SJAG_00301","SJAG_00630","SJAG_03051","SJAG_02829","SJAG_04148","SJAG_03698"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87269],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009916"},{"annotations":[86155],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:8000015"},{"annotations":[86654],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012794"},{"annotations":[85739],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008840"},{"annotations":[87196],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008980"},{"annotations":[86542],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010814"},{"annotations":[86295],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009258"},{"annotations":[85831],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009514"},{"annotations":[85541],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010961"},{"annotations":[87284],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030736"},{"annotations":[85971],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013689"},{"annotations":[86729],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0054850"},{"annotations":[87530],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013972"},{"annotations":[86340],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014126"},{"annotations":[87029],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014497"},{"annotations":[85957],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014843"},{"annotations":[86746,86747],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0054862"},{"annotations":[86042],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030870"},{"annotations":[86443],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0958035"},{"annotations":[87338],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010350"},{"annotations":[86932,86931],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014321"}]},"cv_name":"mondo","definition":"A non-neoplastic or neoplastic disorder that affects the testis or the ovary.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reproductive system disorder","termid":"MONDO:0005039"},{"relation_name":"is_a","term_name":"endocrine system disorder","termid":"MONDO:0005151"}],"gene_count":22,"genes_by_uniquename":{"SJAG_00103":null,"SJAG_00301":null,"SJAG_00377":null,"SJAG_00630":null,"SJAG_02294":null,"SJAG_02339":null,"SJAG_02690":null,"SJAG_02829":null,"SJAG_02954":null,"SJAG_03051":null,"SJAG_03077":null,"SJAG_03418":null,"SJAG_03698":null,"SJAG_03720":null,"SJAG_04110":null,"SJAG_04114":null,"SJAG_04148":null,"SJAG_04337":null,"SJAG_04398":null,"SJAG_04703":null,"SJAG_04738":null,"SJAG_04950":null},"genotype_count":0,"is_obsolete":false,"name":"gonadal disorder","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["NCIT:C26786","UMLS:C0018050","MEDGEN:9074","DOID:2277","MESH:D006058"],"synonyms":[{"name":"disease of gonad","type":"exact"},{"name":"disease or disorder of gonad","type":"exact"},{"name":"disorder of gonad","type":"exact"},{"name":"disorder of gonads","type":"exact"},{"name":"gonad disease","type":"exact"},{"name":"gonad disease or disorder","type":"exact"},{"name":"gonadal disorder","type":"exact"},{"name":"gonadal disorders","type":"exact"}],"termid":"MONDO:0002259","terms_by_termid":{"MONDO:0008840":null,"MONDO:0008980":null,"MONDO:0009258":null,"MONDO:0009514":null,"MONDO:0009916":null,"MONDO:0010350":null,"MONDO:0010814":null,"MONDO:0010961":null,"MONDO:0012794":null,"MONDO:0013689":null,"MONDO:0013972":null,"MONDO:0014126":null,"MONDO:0014321":null,"MONDO:0014497":null,"MONDO:0014843":null,"MONDO:0030736":null,"MONDO:0030870":null,"MONDO:0054850":null,"MONDO:0054862":null,"MONDO:0958035":null,"MONDO:8000015":null},"xrefs":{"Monarch":{"xref_id":"0002259"}}}


id: MONDO:0010904
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"setting-Sun phenomenon, familial benign","secondary_identifiers":["MEDGEN:318913","OMIM:600598","MESH:C563470","UMLS:C1833577"],"synonyms":[{"name":"setting-Sun phenomenon, familial benign","type":"exact"}],"termid":"MONDO:0010904","xrefs":{"Monarch":{"xref_id":"0010904"}}}


id: GO:0046069
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of cyclic GMP, guanosine 3',5'-phosphate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine ribonucleotide catabolic process","termid":"GO:0009154"},{"relation_name":"is_a","term_name":"cyclic nucleotide catabolic process","termid":"GO:0009214"},{"relation_name":"is_a","term_name":"cGMP metabolic process","termid":"GO:0046068"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0055086","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"cGMP catabolic process","synonyms":[{"name":"cGMP breakdown","type":"exact"},{"name":"cGMP catabolism","type":"exact"},{"name":"cGMP degradation","type":"exact"}],"termid":"GO:0046069"}


id: PATO:0000505
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A rhythm quality inhering in a bearer by virtue of the bearer's having rhythm.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rhythm quality","termid":"PATO:0000078"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rhythmic","termid":"PATO:0000505"}


id: GO:0003942
data:
  {"annotated_genes":["SJAG_00636"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71846],"is_not":false,"summary":null,"term":"GO:0003942"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: N-acetyl-L-glutamate 5-semialdehyde + NADP+ + phosphate = N-acetyl-5-glutamyl phosphate + NADPH + H+.","definition_xrefs":["RHEA:21588"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor","termid":"GO:0016620"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00636":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"N-acetyl-gamma-glutamyl-phosphate reductase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["EC:1.2.1.38","MetaCyc:N-ACETYLGLUTPREDUCT-RXN"],"synonyms":[{"name":"N-acetyl-L-glutamate gamma-semialdehyde:NADP oxidoreductase (phosphorylating)","type":"related"},{"name":"N-acetyl-L-glutamate-5-semialdehyde:NADP+ 5-oxidoreductase (phosphorylating)","type":"related"},{"name":"N-acetyl-glutamate semialdehyde dehydrogenase activity","type":"related"},{"name":"N-acetylglutamate 5-semialdehyde dehydrogenase activity","type":"related"},{"name":"N-acetylglutamic gamma-semialdehyde dehydrogenase activity","type":"related"},{"name":"NAGSA dehydrogenase activity","type":"broad"},{"name":"reductase, acetyl-gamma-glutamyl phosphate","type":"related"}],"termid":"GO:0003942","terms_by_termid":{"GO:0003942":null}}


id: PBO:0051382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 7-3 (pseudogene)","termid":"PBO:0051382"}


id: MONDO:1011061
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Polycystic kidney disease that occurs in rabbit.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polycystic kidney disease, non-human animal","termid":"MONDO:1010262"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polycystic kidney disease, rabbit","secondary_identifiers":["OMIA:000807-9986"],"termid":"MONDO:1011061","xrefs":{"Monarch":{"xref_id":"1011061"}}}


id: PBO:0053218
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"galectin 16","termid":"PBO:0053218"}


id: PBO:0017942
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arginine transmembrane transporter Can1","termid":"PBO:0017942"}


id: GO:2000706
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of dense core granule biogenesis.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular process","termid":"GO:0048523"},{"relation_name":"is_a","term_name":"regulation of dense core granule biogenesis","termid":"GO:2000705"},{"relation_name":"negatively_regulates","term_name":"dense core granule biogenesis","termid":"GO:0061110"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"negative regulation of dense core granule biogenesis","termid":"GO:2000706"}


id: MONDO:1010236
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Syringomyelia that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system disorder, non-human animal","termid":"MONDO:1011336"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syringomyelia, non-human animal","secondary_identifiers":["OMIA:000965"],"termid":"MONDO:1010236","xrefs":{"Monarch":{"xref_id":"1010236"}}}


id: SO:0001594
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant which causes a disruption of the translational reading frame, by shifting one base backward.","direct_ancestors":[{"relation_name":"is_a","term_name":"frameshift_variant","termid":"SO:0001589"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plus_1_frameshift_variant","synonyms":[{"name":"+1 frameshift variant","type":"exact"},{"name":"plus 1 frameshift variant","type":"exact"}],"termid":"SO:0001594"}


id: GO:0080042
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ADP-glucose + H2O = AMP + glucose-1-phosphate.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ADP-sugar diphosphatase activity","termid":"GO:0019144"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"ADP-glucose pyrophosphohydrolase activity","termid":"GO:0080042"}


id: PBO:0017000
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces specific protein, localizing to double strand breaks Dbl7","termid":"PBO:0017000"}


id: PBO:0073796
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 6 member 3","termid":"PBO:0073796"}


id: FYPO:0003791
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the occurrence of reciprocal meiotic recombination is increased at the silent mating-type cassettes.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased meiotic recombination","termid":"FYPO:0000487"},{"relation_name":"is_a","term_name":"abnormal meiotic recombination at silent mating-type cassette","termid":"FYPO:0003346"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0000293"],"is_obsolete":false,"name":"increased meiotic recombination at silent mating-type cassette","synonyms":[{"name":"increased meiotic recombination at mating-type region heterochromatin","type":"exact"}],"termid":"FYPO:0003791"}


id: PBO:0030968
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_H3-K9_dimethylation_at_centromere","termid":"PBO:0030968"}


id: PBO:0040467
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase mitochondrial F1 complex assembly factor 1","termid":"PBO:0040467"}


id: MONDO:0015985
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Bone dysplasia Azouz type is a form of generalized enchondromatosis with involvement of the spine (so called spondyloenchondromatosis). Spondyloenchondromatosis is a very rare skeletal dysplasia characterized by severe platyspondyly, and mild involvement of hands and feet.","definition_xrefs":["Orphanet:1844"],"gene_count":0,"genotype_count":0,"name":"obsolete bone dysplasia, Azouz type (obsolete MONDO:0015985)","secondary_identifiers":["SCTID:720566004","GARD:920","icd11.foundation:2054115498"],"synonyms":[{"name":"bone dysplasia Azouz type","type":"related"}],"termid":"MONDO:0015985","xrefs":{"Monarch":{"xref_id":"0015985"}}}


id: PBO:0065379
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pregnancy specific beta-1-glycoprotein 7","termid":"PBO:0065379"}


id: PBO:0083223
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; completely overlaps verified ORF MDM31/YHR194W","termid":"PBO:0083223"}


id: PBO:0076096
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syntaxin 2","termid":"PBO:0076096"}


id: PBO:0002338
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein Rsd1 (predicted)","termid":"PBO:0002338"}


id: GO:0102056
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 3'-phosphonato-5'-adenylyl sulfate + an 11-hydroxyjasmonate = adenosine 3',5'-bismonophosphate + H+ + an 11-hydroxyjasmonate sulfate.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 11-hydroxyjasmonate sulfotransferase activity (obsolete GO:0102056)","termid":"GO:0102056"}


id: PBO:0070502
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L6 pseudogene 1","termid":"PBO:0070502"}


id: PBO:0072370
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S26 pseudogene 56","termid":"PBO:0072370"}


id: MONDO:0018408
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"echinococcus granulosus infectious disease","termid":"MONDO:0044346"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cystic echinococcosis","secondary_identifiers":["GARD:2764","MEDGEN:1639841","MedDRA:10014096","DOID:1495","Orphanet:400","SCTID:721822004","ICD9:122.4","UMLS:C4553297"],"synonyms":[{"name":"Echinococcus granulosus infection","type":"exact"},{"name":"Echinococcus granulosus infection of lung","type":"exact"},{"name":"Echinococcus granulosus infection of thyroid","type":"exact"},{"name":"Echinococcus granulosus infectious disease of liver","type":"exact"},{"name":"Hydatidosis","type":"exact"},{"name":"echinococcus granulosus","type":"exact"},{"name":"echinococcus granulosus infectious disease of liver","type":"exact"},{"name":"echinococcus granulosus infectious disease of thyroid","type":"exact"},{"name":"hydatid disease","type":"exact"},{"name":"liver echinococcus granulosus","type":"exact"},{"name":"lung echinococcus granulosus","type":"exact"},{"name":"thyroid echinococcus granulosus","type":"exact"},{"name":"unilocular echinococcosis","type":"exact"},{"name":"unilocular hydatid disease","type":"exact"}],"termid":"MONDO:0018408","xrefs":{"Monarch":{"xref_id":"0018408"}}}


id: GO:0080120
data:
  {"annotated_genes":["SJAG_00730","SJAG_03396"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[75303,70525],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071586"}]},"cv_name":"biological_process","definition":"A series of specific posttranslational modifications to the CAAX box region of CAAX box proteins. CAAX box proteins are eukaryotic proteins that contain a CAAX motif where the C is a cysteine, the two A residues are aliphatic amino acids and the X can be one of several amino acids. The CAAX-box proteins undergo three sequential, enzymatic, post-translational modifications essential to their targeting: First, the proteins are prenylated by one of two prenyltransferases called farnesyltransferase and geranylgeranyltransferase-I. Prenylation results in the covalent attachment of either farnesyl or geranylgeranyl isoprenoid groups to the cysteine in the CAAX box motif. Prenylation is followed by proteolytic removal of the last three amino acids of the protein (AAX). Finally, the newly exposed carboxylate group of the isoprenylcysteine is methylated by an ER-associated prenyl-dependent carboxylmethyltransferase.","definition_xrefs":["PMID:12039957","PMID:17114793","PMID:18641086"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein maturation","termid":"GO:0051604"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00730":null,"SJAG_03396":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0051604"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0051604"],"is_obsolete":false,"name":"CAAX-box protein maturation","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"CAAX-box protein processing","type":"related"},{"name":"farnesylated protein maturation","type":"related"}],"termid":"GO:0080120","terms_by_termid":{"GO:0071586":null}}


id: MONDO:0016792
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete mitochondrial oxidative phosphorylation disorder due to a large-scale single deletion of mitochondrial DNA (obsolete MONDO:0016792)","secondary_identifiers":["Orphanet:254767"],"synonyms":[{"name":"OXPHOS disease due to a large-scale single deletion of mitochondrial DNA","type":"exact"},{"name":"OXPHOS disease due to a large-scale single deletion of mtDNA","type":"exact"},{"name":"mitochondrial oxidative phosphorylation disorder due to a large-scale single deletion of mtDNA","type":"exact"}],"termid":"MONDO:0016792","xrefs":{"Monarch":{"xref_id":"0016792"}}}


id: PBO:0040057
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin related protein 2/3 complex subunit 3 pseudogene 5","termid":"PBO:0040057"}


id: GO:0000495
data:
  {"annotated_genes":["SJAG_04754"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[80448],"is_not":false,"summary":null,"term":"GO:0000495"}]},"cv_name":"biological_process","definition":"Any process involved in forming the mature 3' end of a box H/ACA RNA molecule.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sno(s)RNA 3'-end processing","termid":"GO:0031126"},{"relation_name":"is_a","term_name":"box H/ACA sno(s)RNA processing","termid":"GO:0034964"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04754":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0016074"}],"interesting_parent_ids":["GO:0008150","GO:0016074","GO:0010467"],"is_obsolete":false,"name":"box H/ACA sno(s)RNA 3'-end processing","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"box H/ACA RNA 3' end processing","type":"exact"},{"name":"box H/ACA sRNA 3'-end processing","type":"narrow"},{"name":"box H/ACA snoRNA 3'-end processing","type":"narrow"}],"termid":"GO:0000495","terms_by_termid":{"GO:0000495":null}}


id: PBO:0068382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 183","termid":"PBO:0068382"}


id: PBO:0112864
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase feature property types","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pombephosphoproteomics_unige_ch_starvation_mating_gene","termid":"PBO:0112864"}


id: PBO:0002869
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucose 1-dehydrogenase (NADP+) (predicted)","termid":"PBO:0002869"}


id: PBO:0003711
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycosyl hydrolase family 16 (predicted)","termid":"PBO:0003711"}


id: MONDO:0005128
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A disease involving the sensory system.","gene_count":0,"genotype_count":0,"name":"obsolete sensory system disease (obsolete MONDO:0005128)","secondary_identifiers":["DOID:0050155"],"synonyms":[{"name":"disease of sensory system","type":"exact"},{"name":"disease or disorder of sensory system","type":"exact"},{"name":"disorder of sensory system","type":"exact"},{"name":"sensory disease","type":"exact"},{"name":"sensory system disease","type":"exact"},{"name":"sensory system disease or disorder","type":"exact"}],"termid":"MONDO:0005128","xrefs":{"Monarch":{"xref_id":"0005128"}}}


id: PBO:0111883
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PMT2 subfamily","termid":"PBO:0111883"}


id: GO:0070887
data:
  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el_names":["part_of"],"summary":null,"term":"GO:0019430"},{"annotations":[105878],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000749"},{"annotations":[100341,106970,95899],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0110052"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to chemical","termid":"GO:0042221"},{"relation_name":"is_a","term_name":"cellular response to 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response to chemical stimulus","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000104":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"termid":"GO:0070887","terms_by_termid":{"GO:0000749":null,"GO:0000750":null,"GO:0010619":null,"GO:0019430":null,"GO:0034599":null,"GO:0035865":null,"GO:0046294":null,"GO:0061692":null,"GO:0070458":null,"GO:0071244":null,"GO:0071248":null,"GO:0071276":null,"GO:0071277":null,"GO:0071456":null,"GO:0071470":null,"GO:0071472":null,"GO:0071473":null,"GO:0071474":null,"GO:0071500":null,"GO:0071507":null,"GO:0098849":null,"GO:0098869":null,"GO:0110052":null,"GO:0110095":null,"GO:0140041":null,"GO:0140114":null,"GO:1900039":null,"GO:1990748":null}}


id: FYPO:0001030
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing dithiothreitol.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0002060","FYPO:0000003","FYPO:0000139","FYPO:0002057","FYPO:0002058","FYPO:0000257"],"is_obsolete":false,"name":"normal growth on dithiothreitol","synonyms":[{"name":"normal cell population growth in presence of dithiothreitol","type":"exact"},{"name":"normal cell population growth on 1,4-dithiothreitol","type":"exact"},{"name":"normal cell population growth on DTT","type":"exact"},{"name":"normal cell population growth on dithiothreitol","type":"exact"},{"name":"normal cellular response to dithiothreitol","type":"related"},{"name":"normal vegetative cell population growth on dithiothreitol","type":"exact"}],"termid":"FYPO:0001030"}


id: MONDO:1011586
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pituitary-dependent hyperadrenocorticism that occurs in domestic cat.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"feline neoplasm","termid":"MONDO:0700175"},{"relation_name":"is_a","term_name":"pituitary-dependent hyperadrenocorticism, non-human animal","termid":"MONDO:1011400"},{"relation_name":"is_a","term_name":"hyperadrenocorticism, domestic cat","termid":"MONDO:1011531"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pituitary-dependent hyperadrenocorticism, domestic cat","secondary_identifiers":["OMIA:000247-9685"],"termid":"MONDO:1011586","xrefs":{"Monarch":{"xref_id":"1011586"}}}


id: PBO:0069171
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 424, pseudogene","termid":"PBO:0069171"}


id: GO:0004833
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-tryptophan + O2 = N-formyl-L-kynurenine.","definition_xrefs":["EC:1.13.11.11"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen","termid":"GO:0016702"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"tryptophan 2,3-dioxygenase activity","secondary_identifiers":["Reactome:R-HSA-198563","Reactome:R-HSA-888614","GO:0004426","MetaCyc:TRYPTOPHAN-23-DIOXYGENASE-RXN","RHEA:24536","Reactome:R-HSA-71188"],"synonyms":[{"name":"L-tryptophan 2,3-dioxygenase activity","type":"related"},{"name":"L-tryptophan pyrrolase activity","type":"related"},{"name":"L-tryptophan:oxygen 2,3-oxidoreductase (decyclizing)","type":"related"},{"name":"TDO","type":"related"},{"name":"indolamine 2,3-dioxygenase activity","type":"broad"},{"name":"indoleamine-pyrrole 2,3-dioxygenase activity","type":"exact"},{"name":"tryptamin 2,3-dioxygenase activity","type":"related"},{"name":"tryptamine 2,3-dioxygenase activity","type":"related"},{"name":"tryptophan oxygenase activity","type":"broad"},{"name":"tryptophan peroxidase activity","type":"broad"},{"name":"tryptophan pyrrolase activity","type":"broad"}],"termid":"GO:0004833"}


id: GO:0046762
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A viral budding that starts with formation of a membrane curvature in the host ER membrane.","definition_xrefs":["GOC:jl","VZ:1947","GOC:bf","ISBN:0072370319"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral budding","termid":"GO:0046755"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"viral budding from endoplasmic reticulum membrane","secondary_identifiers":["GO:0046751","GO:0046764"],"synonyms":[{"name":"ER membrane viral budding","type":"exact"},{"name":"ER membrane viral budding during viral capsid envelopment","type":"related"},{"name":"endoplasmic reticulum membrane viral budding","type":"exact"},{"name":"endoplasmic reticulum membrane viral budding during viral capsid envelopment","type":"related"},{"name":"viral budding from ER membrane","type":"exact"},{"name":"viral budding from ER membrane by viral capsid envelopment","type":"related"},{"name":"viral budding from ER membrane during viral capsid envelopment","type":"related"},{"name":"virus budding from ER membrane","type":"exact"},{"name":"virus budding from ER membrane by viral capsid envelopment","type":"exact"},{"name":"virus budding from ER membrane during viral capsid envelopment","type":"related"}],"termid":"GO:0046762"}


id: FYPO:0000715
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to K-252a. Cells stop growing (and may die) at a concentration of K-252a that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0002683","FYPO:0001985","FYPO:0005447","FYPO:0000003"],"is_obsolete":false,"name":"sensitive to K-252a","synonyms":[{"name":"hypersensitive to K-252a","type":"exact"},{"name":"sensitive to K-252a during mitotic cell cycle","type":"related"},{"name":"sensitive to K-252a during vegetative growth","type":"exact"}],"termid":"FYPO:0000715"}


id: PBO:0052850
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 4-6","termid":"PBO:0052850"}


id: GO:0050451
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 CoA + NADP+ = CoA-disulfide + NADPH + H+.","definition_xrefs":["RHEA:14705"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disulfide oxidoreductase activity","termid":"GO:0015036"},{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor","termid":"GO:0016668"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0015036"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0015036","GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"CoA-disulfide reductase (NADPH) activity","secondary_identifiers":["EC:1.8.1.14","MetaCyc:COA-DISULFIDE-REDUCTASE-NADH-RXN"],"synonyms":[{"name":"CoA-disulfide reductase (NADH) activity","type":"related"},{"name":"CoA-disulfide reductase (NADP) activity","type":"exact"},{"name":"CoA-disulfide reductase activity","type":"broad"},{"name":"CoA-disulphide reductase activity","type":"broad"},{"name":"CoADR activity","type":"related"},{"name":"NADH:CoA-disulfide oxidoreductase activity","type":"related"},{"name":"coenzyme A disulfide reductase activity","type":"related"}],"termid":"GO:0050451"}


id: GO:2000970
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of detection of glucose.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to stimulus","termid":"GO:0048583"},{"relation_name":"regulates","term_name":"detection of glucose","termid":"GO:0051594"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of detection of glucose","synonyms":[{"name":"regulation of glucose detection","type":"exact"},{"name":"regulation of glucose perception","type":"related"},{"name":"regulation of glucose sensing","type":"related"}],"termid":"GO:2000970"}


id: MONDO:0044001
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hearing loss characterized by a combination of conductive and sensorineural hearing loss. It is caused by problems in both the inner ear and middle or outer ear.","definition_xrefs":["NCIT:C26974"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hearing loss disorder","termid":"MONDO:0005365"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hearing loss, mixed conductive-sensorineural","secondary_identifiers":["MEDGEN:102336","UMLS:C0155552","SCTID:77507001","MESH:D046089"],"synonyms":[{"name":"Losses, mixed hearing","type":"related"},{"name":"hearing loss, mixed","type":"related"},{"name":"hearing loss, mixed conductive sensorineural","type":"related"},{"name":"loss, mixed hearing","type":"related"},{"name":"mixed conductive and sensorineural deafness","type":"exact"},{"name":"mixed conductive and sensorineural hearing loss","type":"exact"},{"name":"mixed deafness","type":"related"},{"name":"mixed hearing loss","type":"exact"},{"name":"mixed type deafness","type":"related"}],"termid":"MONDO:0044001","xrefs":{"Monarch":{"xref_id":"0044001"}}}


id: MONDO:0001264
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Kyasanur forest disease (obsolete MONDO:0001264)","termid":"MONDO:0001264","xrefs":{"Monarch":{"xref_id":"0001264"}}}


id: MONDO:0100361
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any herpes simplex type 1 infectious disease that involves the lip. This virus usually responsible for cold sores (herpes labialis).","definition_xrefs":["PMID:31733122","MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"herpes labialis","termid":"MONDO:0043653"},{"relation_name":"is_a","term_name":"herpes simplex type 1 infectious disease","termid":"MONDO:0100359"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lip herpes simplex type 1 infectious disorder","termid":"MONDO:0100361","xrefs":{"Monarch":{"xref_id":"0100361"}}}


id: GO:0019332
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The oxidation of nitrite (NO2) to nitrate (NO3), using oxygen (O2) as the electron acceptor. Nitrite oxidation is the final step in nitrification, the oxidation of ammonia to nitrate, and nitrite oxidoreductase (NOR) is the key enzyme complex that catalyzes the conversion of nitrite to nitrate in nitrite oxidizing species.","definition_xrefs":["MetaCyc:P282-PWY"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aerobic respiration","termid":"GO:0009060"},{"relation_name":"is_a","term_name":"energy derivation by oxidation of reduced inorganic compounds","termid":"GO:0015975"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006091"],"is_obsolete":false,"name":"aerobic respiration, using nitrite as electron donor","synonyms":[{"name":"nitrite oxidation","type":"broad"}],"termid":"GO:0019332"}


id: PBO:0057182
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 337","termid":"PBO:0057182"}


id: MONDO:0014028
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Distal arthrogryposis type 5D is a rare subtype of distal arthrogryposis syndrome characterized by arthrogryposis multiplex congenita affecting the hands, feet, ankle, shoulders and/or neck, with camptodactyly of the fingers and limited knee and hip extension, associated with asymmetric ptosis and, less frequently, other ocular manifestations (e.g. ophthalmoplegia, strabismus). Affected individuals frequently have a bulbous nose, furrowed tongue, micro/retrognathia, a short neck, congenital hip dislocation, club feet, scoliosis and short stature.","definition_xrefs":["Orphanet:329457"],"direct_ancestors":[{"relation_name":"is_a","term_name":"distal arthrogryposis","termid":"MONDO:0019942"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"distal arthrogryposis type 5D","secondary_identifiers":["DOID:0111594","MEDGEN:767329","UMLS:C3554415","GARD:13059","OMIM:615065"],"synonyms":[{"name":"DA5D","type":"exact"},{"name":"ECEL1 distal arthrogryposis","type":"exact"},{"name":"arthrogryposis, distal, type 5D","type":"related"},{"name":"distal arthrogryposis caused by mutation in ECEL1","type":"exact"},{"name":"distal arthrogryposis type 5 without ophthalmoparesis","type":"exact"},{"name":"distal arthrogryposis type 5 without ophthalmoplegia","type":"exact"}],"termid":"MONDO:0014028","xrefs":{"Monarch":{"xref_id":"0014028"}}}


id: PBO:0040495
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aurora kinase A and ninein interacting protein","termid":"PBO:0040495"}


id: MOD:00939
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative","definition_xrefs":["Unimod:500"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"hydrolyzed N-methylmaleimide cysteine adduct","synonyms":[{"name":"Nmethylmaleimide+water","type":"related"},{"name":"Nmethylmaleimidehydrolysis","type":"related"}],"termid":"MOD:00939"}


id: PBO:0002811
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ran GAP Rna1","termid":"PBO:0002811"}


id: PBO:0088106
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Uridylate kinase; catalyzes the seventh enzymatic step in the de novo biosynthesis of pyrimidines, converting uridine monophosphate (UMP) into uridine-5'-diphosphate (UDP)","termid":"PBO:0088106"}


id: PBO:0041903
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CBFA2/RUNX1 partner transcriptional co-repressor 3","termid":"PBO:0041903"}


id: GO:0051377
data:
  {"annotated_genes":["SJAG_02523","SJAG_03506","SJAG_02488","SJAG_04165"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[72199,78576,115174],"is_not":false,"summary":null,"term":"GO:0051377"},{"annotations":[77833],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051267"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of ethanolamine phosphate to a mannose residue in the GPI lipid precursor.","definition_xrefs":["PMID:15632136"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, for other substituted phosphate groups","termid":"GO:0016780"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02488":null,"SJAG_02523":null,"SJAG_03506":null,"SJAG_04165":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016780"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016780","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"mannose-ethanolamine phosphotransferase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-162798"],"synonyms":[{"name":"EtN-P transferase activity","type":"exact"},{"name":"addition of ethanolamine phosphate to mannose of GPI precursor","type":"exact"},{"name":"ethanolamine phosphate transferase activity","type":"broad"},{"name":"phosphoethanolamine transferase activity","type":"broad"}],"termid":"GO:0051377","terms_by_termid":{"GO:0051267":null,"GO:0051377":null}}


id: GO:0005012
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete Neu/ErbB-2 receptor activity (obsolete GO:0005012)","synonyms":[{"name":"Neu/ErbB-2 receptor activity","type":"exact"}],"termid":"GO:0005012"}


id: PBO:0029666
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_phosphorylation_during_vegetative_growth","termid":"PBO:0029666"}


id: FYPO:0001789
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the nucleus is normal (i.e. indistinguishable from wild type) during a cellular response to oxidative stress.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to nucleus during vegetative growth","termid":"FYPO:0000838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001312","FYPO:0000138","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"normal protein localization to nucleus during cellular response to oxidative stress","synonyms":[{"name":"normal protein localisation to nucleus during cellular response to oxidative stress","type":"exact"},{"name":"normal protein localization to nucleus during cellular response to oxidative stress during mitotic cell cycle","type":"related"},{"name":"normal protein localization to nucleus during cellular response to oxidative stress during vegetative growth","type":"exact"},{"name":"normal protein localization to nucleus during oxidative stress","type":"exact"},{"name":"normal protein localization to nucleus during oxidative stress response","type":"exact"}],"termid":"FYPO:0001789"}


id: PBO:0090568
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA endoribonuclease involved in mRNP quality control Swt1","termid":"PBO:0090568"}


id: MONDO:1011783
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic disease, non-human animal","termid":"MONDO:1011331"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha fucosidosis, non-human animal","secondary_identifiers":["OMIA:000396"],"termid":"MONDO:1011783","xrefs":{"Monarch":{"xref_id":"1011783"}}}


id: PBO:0087584
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C); necessary for maintaining sister chromatid cohesion in prophase I of meiosis by inhibiting premature ubiquitination and subsequent degradation of substrates by the APC(Ama1) ubiquitin ligase","termid":"PBO:0087584"}


id: GO:0003178
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the valve of the coronary sinus over time, from its formation to the mature structure.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heart valve development","termid":"GO:0003170"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"coronary sinus valve development","termid":"GO:0003178"}


id: GO:1990079
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A tissue homeostatic process involved in the maintenance of an internal equilibrium within cartilage, including control of cellular proliferation and death and control of metabolic function.","definition_xrefs":["PMID:21652695","GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tissue homeostasis","termid":"GO:0001894"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cartilage homeostasis","secondary_identifiers":["GO:1902096","GO:1902094","GO:1902095"],"synonyms":[{"name":"negative regulation of cartilage homeostasis","type":"related"},{"name":"positive regulation of cartilage homeostasis","type":"related"},{"name":"regulation of cartilage homeostasis","type":"related"}],"termid":"GO:1990079"}


id: MONDO:0003630
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A metastasizing, slow-growing malignant epithelial neoplasm that arises from the exocrine pancreas. It is characterized by the presence of cysts and is composed of glycogen-rich malignant epithelial cells which produce a watery fluid. Signs and symptoms include upper gastrointestinal bleeding, weight loss, jaundice, and abdominal pain.","definition_xrefs":["NCIT:C5724"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pancreatic serous cystic neoplasm","termid":"MONDO:0002810"},{"relation_name":"is_a","term_name":"pancreatic cystadenocarcinoma","termid":"MONDO:0002867"},{"relation_name":"is_a","term_name":"serous cystadenocarcinoma","termid":"MONDO:0024621"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992"],"is_obsolete":false,"name":"pancreatic serous cystadenocarcinoma","secondary_identifiers":["Orphanet:424073","MEDGEN:233832","DOID:5751","UMLS:C1335315","GARD:21781"],"synonyms":[{"name":"pancreas serous adenocarcinoma","type":"exact"},{"name":"pancreatic serous cystadenocarcinoma","type":"exact"},{"name":"serous cystadenocarcinoma of pancreas","type":"exact"},{"name":"serous cystadenocarcinoma of the pancreas","type":"exact"}],"termid":"MONDO:0003630","xrefs":{"Monarch":{"xref_id":"0003630"}}}


id: MONDO:0006054
data:
  {"annotated_genes":["SJAG_03429","SJAG_00997","SJAG_01156","SJAG_02748","SJAG_04885","SJAG_01419"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87062],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009050"},{"annotations":[85379,87593],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011962"},{"annotations":[87454],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032747"},{"annotations":[87645,87644],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013872"}]},"cv_name":"mondo","definition":"A benign or malignant, primary or metastatic neoplasm affecting the male and female reproductive system.","definition_xrefs":["NCIT:C3674"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reproductive system disorder","termid":"MONDO:0005039"},{"relation_name":"is_a","term_name":"neoplasm","termid":"MONDO:0005070"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00997":null,"SJAG_01156":null,"SJAG_01419":null,"SJAG_02748":null,"SJAG_03429":null,"SJAG_04885":null},"genotype_count":0,"is_obsolete":false,"name":"reproductive system neoplasm","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["EFO:1000051","MEDGEN:64246","UMLS:C0178830"],"synonyms":[{"name":"neoplasm of reproductive system","type":"exact"},{"name":"neoplasm of the reproductive system","type":"exact"},{"name":"reproductive neoplasm","type":"exact"},{"name":"reproductive system neoplasm","type":"exact"},{"name":"reproductive system neoplasm (disease)","type":"exact"},{"name":"reproductive system tumor","type":"exact"},{"name":"reproductive system tumour","type":"exact"},{"name":"reproductive tumor","type":"exact"},{"name":"reproductive tumour","type":"exact"},{"name":"tumor of reproductive system","type":"exact"},{"name":"tumor of the reproductive system","type":"exact"},{"name":"tumour of reproductive system","type":"exact"},{"name":"tumour of the reproductive system","type":"exact"}],"termid":"MONDO:0006054","terms_by_termid":{"MONDO:0009050":null,"MONDO:0011962":null,"MONDO:0013872":null,"MONDO:0032747":null},"xrefs":{"Monarch":{"xref_id":"0006054"}}}


id: PBO:0032739
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"human FAM32A homolog, implicated in splicing","termid":"PBO:0032739"}


id: PBO:0005480
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-1,4-glucan synthase Ags1","termid":"PBO:0005480"}


id: PBO:0067469
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 598, pseudogene","termid":"PBO:0067469"}


id: PBO:0083496
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified gene YJL194W/CDC6","termid":"PBO:0083496"}


id: PBO:0068376
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 169","termid":"PBO:0068376"}


id: SO:0000539
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one DJ-gene and one C-gene.","direct_ancestors":[{"relation_name":"has_part","term_name":"C_gene_segment","termid":"SO:0000478"},{"relation_name":"has_part","term_name":"DJ_gene_segment","termid":"SO:0000572"},{"relation_name":"is_a","term_name":"vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster","termid":"SO:0000938"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DJ_C_cluster","synonyms":[{"name":"(DJ)-C-CLUSTER","type":"exact"},{"name":"DJ C cluster","type":"exact"}],"termid":"SO:0000539"}


id: GO:1990641
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of iron ion.","definition_xrefs":["PMID:16208485"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to metal ion starvation","termid":"GO:0180055"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to iron ion starvation","termid":"GO:1990641"}


id: PBO:0049482
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H1.6 linker histone, cluster member","termid":"PBO:0049482"}


id: PBO:0049334
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"general transcription factor IIH subunit 2","termid":"PBO:0049334"}


id: PBO:0045133
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynein axonemal assembly factor 3","termid":"PBO:0045133"}


id: MONDO:0022776
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cleft lip and/or palate with mucous cysts of lower","termid":"MONDO:0022776","xrefs":{"Monarch":{"xref_id":"0022776"}}}


id: FYPO:0002730
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the total amount of DNA in a cell is greater than normal when the cell is in a culture in stationary phase.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA content increased","termid":"FYPO:0002729"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"DNA content increased during stationary phase","synonyms":[{"name":"increased DNA content during stationary phase","type":"exact"},{"name":"increased DNA level during stationary phase","type":"exact"}],"termid":"FYPO:0002730"}


id: MOD:00685
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-glutamine residue to L-glutamic acid.","definition_xrefs":["PubMed:957425","PubMed:4922541","RESID:AA0006#GLN","PubMed:1881881","PubMed:4565668","Unimod:7#Q","PubMed:6692818","PubMed:9192900"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-glutamic acid residue","termid":"MOD:00015"},{"relation_name":"is_a","term_name":"deamidated residue","termid":"MOD:00400"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deamidated L-glutamine","synonyms":[{"name":"(2S)-2-aminopentanedioic acid","type":"exact"},{"name":"1-aminopropane-1,3-dicarboxylic acid","type":"exact"},{"name":"2-aminoglutaric acid","type":"exact"},{"name":"2-azanylpentanedioic acid","type":"exact"},{"name":"L-glutamic acid","type":"exact"},{"name":"MOD_RES Deamidated glutamine","type":"exact"},{"name":"alpha-aminoglutaric acid","type":"exact"},{"name":"dNGln","type":"exact"},{"name":"glutaminic acid","type":"exact"}],"termid":"MOD:00685"}


id: _global:quality_of
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"a relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence","direct_ancestors":[{"relation_name":"is_a","term_name":"characteristic_of","termid":"_global:characteristic_of"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"quality_of","secondary_identifiers":["RO:0000080"],"termid":"_global:quality_of"}


id: GO:0009463
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Diheme cytochrome b; cytochrome b has the hemes b(562) and b(566) and is a component of the mitochondrial respiratory chain complex III. Cytochrome b6 is a component of bc complex acting between photosystems II and I of photosynthesis.","definition_xrefs":["ISBN:0198547684"],"gene_count":0,"genotype_count":0,"name":"obsolete cytochrome b/b6 (obsolete GO:0009463)","synonyms":[{"name":"cytochrome b/b6","type":"exact"}],"termid":"GO:0009463"}


id: GO:0015125
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of bile acid from one side of a membrane to the other. Bile acids are any of a group of steroid carboxylic acids occurring in bile, where they are present as the sodium salts of their amides with glycine or taurine.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid transmembrane transporter activity","termid":"GO:0008028"},{"relation_name":"is_a","term_name":"lipid transmembrane transporter activity","termid":"GO:0170055"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"bile acid transmembrane transporter activity","secondary_identifiers":["Reactome:R-HSA-5661198","Reactome:R-HSA-9733964","Reactome:R-HSA-194079","Reactome:R-HSA-194130","Reactome:R-HSA-5661184","Reactome:R-HSA-194083"],"termid":"GO:0015125"}


id: PBO:0045381
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DPP3 pseudogene 2","termid":"PBO:0045381"}


id: GO:0071086
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alphaIIb-beta3 integrin complex bound to the cell surface proteins CD9 and CD47, and the heterodimeric platelet glycoprotein Ib.","definition_xrefs":["PMID:10429193"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycoprotein complex","termid":"GO:0090665"},{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005886","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"alphaIIb-beta3 integrin-CD9-CD47-platelet glycoprotein Ib complex","synonyms":[{"name":"ITGA2b-ITGB3-CD9-GP1b-CD47 complex","type":"narrow"}],"termid":"GO:0071086"}


id: GO:0032917
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The modification of polyamines by addition of acetyl groups.","definition_xrefs":["GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyamine metabolic process","termid":"GO:0006595"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"polyamine acetylation","termid":"GO:0032917"}


id: MONDO:0001780
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disorder characterized by persistent or recurrent ejaculation before or after penetration and before the person wishes it.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sexual disorder","termid":"MONDO:0000595"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"premature ejaculation","secondary_identifiers":["UMLS:C0033038","MESH:D061686","NCIT:C94349","HP:0012876","ICD9:302.75","MEDGEN:452112","ICD10CM:F52.4","DOID:13709"],"synonyms":[{"name":"premature ejaculation","type":"exact"},{"name":"premature ejaculation (disease)","type":"exact"}],"termid":"MONDO:0001780","xrefs":{"Monarch":{"xref_id":"0001780"}}}


id: PBO:0055407
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2837","termid":"PBO:0055407"}


id: MONDO:0022971
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diabetes persistent mullerian ducts","termid":"MONDO:0022971","xrefs":{"Monarch":{"xref_id":"0022971"}}}


id: PBO:0043000
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chitinase 3 like 1","termid":"PBO:0043000"}


id: MONDO:0015742
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Periventricular leukomalacia (PVL) is a brain injury disorder characterized by the death of the white matter of the brain due to softening of the brain tissue. It can affect fetuses or newborns, and premature babies are at the greatest risk of the disorder. PVL is caused by a lack of oxygen or blood flow to thearea around the ventricles of the brain, which results in the death of brain tissue. Although babies with PVL generally have no apparent signs or symptoms of the disorder at delivery, they are at risk for motor disorders, cerebral palsy, delayed mental development, coordination problems, and vision and hearing impairments. There is no cure for PVL. Treatment is generally supportive. Prognosis is dependent on the extent of damage to the ventricles.","direct_ancestors":[{"relation_name":"is_a","term_name":"encephalomalacia","termid":"MONDO:0006741"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"periventricular leukomalacia","secondary_identifiers":["ICD9:742.8","MEDGEN:6072","SCTID:230769007","MedDRA:10052594","MESH:D007969","Orphanet:171676","EFO:1001101","NCIT:C99013","UMLS:C0023529","ICD9:779.7","DOID:13088"],"synonyms":[{"name":"PVL","type":"related"}],"termid":"MONDO:0015742","xrefs":{"Monarch":{"xref_id":"0015742"}}}


id: PBO:0039389
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amylase alpha pseudogene 1","termid":"PBO:0039389"}


id: PBO:0044155
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CTDP1 divergent transcript","termid":"PBO:0044155"}


id: PBO:0052148
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium voltage-gated channel interacting protein 3","termid":"PBO:0052148"}


id: PBO:0040640
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"basic leucine zipper ATF-like transcription factor","termid":"PBO:0040640"}


id: PBO:0052103
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium voltage-gated channel subfamily A member 6","termid":"PBO:0052103"}


id: GO:1901021
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of calcium ion transmembrane transporter activity.","definition_xrefs":["GOC:BHF","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of calcium ion transmembrane transporter activity (obsolete GO:1901021)","synonyms":[{"name":"activation of calcium ion transmembrane transporter activity","type":"narrow"},{"name":"up regulation of calcium ion transmembrane transporter activity","type":"exact"},{"name":"up-regulation of calcium ion transmembrane transporter activity","type":"exact"},{"name":"upregulation of calcium ion transmembrane transporter activity","type":"exact"}],"termid":"GO:1901021"}


id: PBO:0017757
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WIP family cytoskeletal protein Bbc1 (predicted)","termid":"PBO:0017757"}


id: GO:0071697
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of an ectodermal placode are generated and organized. An ectodermal placode is a thickening of the ectoderm that is the primordium of many structures derived from the ectoderm.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"},{"relation_name":"part_of","term_name":"ectodermal placode development","termid":"GO:0071696"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ectodermal placode morphogenesis","termid":"GO:0071697"}


id: FYPO:0000704
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the binding of one protein to another is abnormal. The relevant proteins may include the one encoded by the mutated gene, or may both be encoded by different genes.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-protein interaction phenotype","termid":"FYPO:0000702"},{"relation_name":"is_a","term_name":"abnormal molecular function","termid":"FYPO:0000707"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000702"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000702","FYPO:0000652","FYPO:0000707","FYPO:0001985"],"is_obsolete":false,"name":"abnormal protein-protein interaction","synonyms":[{"name":"abnormal protein binding","type":"exact"}],"termid":"FYPO:0000704"}


id: PR:000027845
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- dma1 gene or a 1:1 ortholog thereof.","definition_xrefs":["PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"E3 ubiquitin-protein ligase dma1","synonyms":[{"name":"dma1","type":"exact"}],"termid":"PR:000027845"}


id: GO:0047035
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: testosterone + NAD+ = androst-4-ene-3,17-dione + NADH.","definition_xrefs":["RHEA:14929"],"direct_ancestors":[{"relation_name":"is_a","term_name":"testosterone dehydrogenase [NAD(P)+] activity","termid":"GO:0030283"},{"relation_name":"is_a","term_name":"17-beta-hydroxysteroid dehydrogenase (NAD+) activity","termid":"GO:0044594"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"testosterone dehydrogenase (NAD+) activity","secondary_identifiers":["GO:0050327","KEGG_REACTION:R01836","EC:1.1.1.239","Wikipedia:3alpha(17beta)-hydroxysteroid_dehydrogenase_(NAD+)","MetaCyc:TESTOSTERONE-17-BETA-DEHYDROGENASE-RXN"],"synonyms":[{"name":"17-beta-HSD activity","type":"broad"},{"name":"17-ketoreductase activity","type":"broad"},{"name":"17beta-HSD","type":"related"},{"name":"17beta-hydroxysteroid:NAD+ 17-oxidoreductase activity","type":"related"},{"name":"3-alpha(17-beta)-hydroxysteroid dehydrogenase (NAD+) activity","type":"broad"},{"name":"3alpha(17beta)-HSD","type":"related"},{"name":"3alpha(17beta)-hydroxysteroid dehydrogenase (NAD+)","type":"broad"},{"name":"3alpha(or 17beta)-hydroxysteroid:NAD+ oxidoreductase activity","type":"broad"},{"name":"3alpha,17beta-hydroxy steroid dehydrogenase activity","type":"broad"},{"name":"testosterone 17-beta-dehydrogenase (NAD+) activity","type":"exact"},{"name":"testosterone 17b-dehydrogenase activity","type":"exact"},{"name":"testosterone 17beta-dehydrogenase activity","type":"related"}],"termid":"GO:0047035"}


id: PBO:0090814
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial translation initiation factor Mti3","termid":"PBO:0090814"}


id: PBO:0076389
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tachykinin receptor 2","termid":"PBO:0076389"}


id: GO:0035288
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Partitioning the insect head anlage into procephalic (labral, (ocular), antennal and intercalary) segments. The procephalic segments lie anterior to the gnathal (posterior head) segments, and are pattered by different segmentation gene cascades to the abdominal, thoracic and posterior head (gnathal) segments.","definition_xrefs":["PMID:15382136"],"direct_ancestors":[{"relation_name":"is_a","term_name":"head segmentation","termid":"GO:0035287"},{"relation_name":"part_of","term_name":"anterior head development","termid":"GO:0097065"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anterior head segmentation","synonyms":[{"name":"procephalic segmentation","type":"related"}],"termid":"GO:0035288"}


id: GO:0090080
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands resulting in an increase in the rate or frequency of a MAPKKK cascade.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fibroblast growth factor receptor signaling pathway","termid":"GO:0008543"},{"relation_name":"is_a","term_name":"positive regulation of MAPK cascade","termid":"GO:0043410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of MAPKKK cascade by fibroblast growth factor receptor signaling pathway","synonyms":[{"name":"positive regulation of MAPKKK cascade by fibroblast growth factor receptor signalling pathway","type":"exact"}],"termid":"GO:0090080"}


id: GO:0047342
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: alpha-D-galactose 1-phosphate + dTTP = diphosphate + dTDP-D-galactose.","definition_xrefs":["EC:2.7.7.32","RHEA:17165"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleotidyltransferase activity","termid":"GO:0016779"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016779"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0016779","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"galactose-1-phosphate thymidylyltransferase activity","secondary_identifiers":["MetaCyc:2.7.7.32-RXN","KEGG_REACTION:R02329"],"synonyms":[{"name":"dTDP galactose pyrophosphorylase activity","type":"related"},{"name":"dTDP-galactose diphosphorylase activity","type":"related"},{"name":"dTDP-galactose pyrophosphorylase activity","type":"related"},{"name":"dTTP:alpha-D-galactose-1-phosphate thymidylyltransferase activity","type":"related"},{"name":"galactose 1-phosphate thymidylyl transferase activity","type":"related"},{"name":"thymidine diphosphogalactose pyrophosphorylase activity","type":"related"},{"name":"thymidine triphosphate:alpha-D-galactose 1-phosphate thymidylyltransferase activity","type":"related"}],"termid":"GO:0047342"}


id: PBO:0004263
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"6.3.3.2","termid":"PBO:0004263"}


id: GO:1901285
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of 5,6,7,8-tetrahydromethanopterin.","definition_xrefs":["GOC:yaf","GOC:TermGenie","UniPathway:UPA00065"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dicarboxylic acid biosynthetic process","termid":"GO:0043650"},{"relation_name":"is_a","term_name":"5,6,7,8-tetrahydromethanopterin metabolic process","termid":"GO:1901283"},{"relation_name":"is_a","term_name":"tetrahydromethanopterin biosynthetic process","termid":"GO:2001118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0042559"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0042559","GO:0044281"],"is_obsolete":false,"name":"5,6,7,8-tetrahydromethanopterin biosynthetic process","synonyms":[{"name":"5,6,7,8-tetrahydromethanopterin anabolism","type":"exact"},{"name":"5,6,7,8-tetrahydromethanopterin biosynthesis","type":"exact"},{"name":"5,6,7,8-tetrahydromethanopterin formation","type":"exact"},{"name":"5,6,7,8-tetrahydromethanopterin synthesis","type":"exact"}],"termid":"GO:1901285"}


id: GO:0046588
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of calcium-dependent cell-cell adhesion.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell-cell adhesion","termid":"GO:0022408"},{"relation_name":"is_a","term_name":"regulation of calcium-dependent cell-cell adhesion","termid":"GO:0046586"},{"relation_name":"negatively_regulates","term_name":"calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules","termid":"GO:0016339"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"negative regulation of calcium-dependent cell-cell adhesion","synonyms":[{"name":"down regulation of calcium-dependent cell-cell adhesion","type":"exact"},{"name":"down-regulation of calcium-dependent cell-cell adhesion","type":"exact"},{"name":"downregulation of calcium-dependent cell-cell adhesion","type":"exact"},{"name":"inhibition of calcium-dependent cell-cell adhesion","type":"narrow"}],"termid":"GO:0046588"}


id: PBO:0041277
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C1QTNF3-AMACR readthrough (NMD candidate)","termid":"PBO:0041277"}


id: GO:0047697
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (R)-beta-alanopine + H2O + NAD+ = beta-alanine + H+ + NADH + pyruvate.","definition_xrefs":["EC:1.5.1.26","RHEA:21684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor","termid":"GO:0016646"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"beta-alanopine dehydrogenase activity","secondary_identifiers":["KEGG_REACTION:R00906","MetaCyc:BETA-ALANOPINE-DEHYDROGENASE-RXN"],"synonyms":[{"name":"N-(D-1-carboxyethyl)-beta-alanine:NAD+ oxidoreductase (beta-alanine-forming)","type":"related"},{"name":"b-alanopine dehydrogenase activity","type":"exact"}],"termid":"GO:0047697"}


id: PBO:0082882
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cyanamide hydratase that detoxifies cyanamide; member of the HD domain metalloprotein superfamily; expression is induced over 100-fold by cyanamide and by SN2-type DNA alkylating agents such as MMS and DMA; induction decreased in rad6 and rad18 mutants; gene and protein are identical to DDI3 and Ddi3p","termid":"PBO:0082882"}


id: PBO:0043746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 7B2","termid":"PBO:0043746"}


id: PBO:0080386
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VPS13C divergent transcript","termid":"PBO:0080386"}


id: GO:0097598
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A small amount of cytoplasm surrounded by a cell membrane that is generally retained in spermatozoa after spermiogenesis, when the majority of the cytoplasm is phagocytosed by Sertoli cells to produce what are called residual bodies. Initially, the droplet is located at the neck just behind the head of an elongated spermatid. During epididymal transit, the cytoplasmic droplet migrates caudally to the annulus at the end of the midpiece; the exact position and time varies by species. The cytoplasmic droplet consists of lipids, lipoproteins, RNAs, a variety of hydrolytic enzymes, receptors, ion channels, and Golgi-derived vesicles. The droplet may be involved in regulatory volume loss (RVD) at ejaculation, and in most species, though not in humans, the cytoplasmic droplet is lost at ejaculation. Note that the cytoplasmic droplet is distinct from 'excessive residual cytoplasm' that sometimes remains in epididymal spermatozoa, particularly when spermiogenesis has been disrupted.","definition_xrefs":["PMID:23159014","PMID:12672117","GOC:vesicles","GOC:krc","PMID:21076437"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic vesicle","termid":"GO:0031410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0031410"],"is_obsolete":false,"name":"sperm cytoplasmic droplet","synonyms":[{"name":"sperm residual cytoplasm","type":"exact"}],"termid":"GO:0097598"}


id: PBO:0000341
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arrestin/PY protein 1 (predicted)","termid":"PBO:0000341"}


id: PBO:0056982
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 30b","termid":"PBO:0056982"}


id: PBO:0046936
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 53 member B","termid":"PBO:0046936"}


id: PBO:0074570
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA host gene 26","termid":"PBO:0074570"}


id: GO:0102553
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2 S-adenosyl-L-methionine + a [pyruvate dehydrogenase E2 protein] N6-octanoyl-L-lysine + 2 a sulfurated [sulfur carrier] = 2 L-methionine + 2 5'-deoxyadenosine + 2 H+ + a [pyruvate dehydrogenase E2 protein] N6-lipoyl-L-lysine + 2 an unsulfurated [sulfur carrier].","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete lipoyl synthase activity (acting on pyruvate dehydrogenase E2 protein) (obsolete GO:0102553)","termid":"GO:0102553"}


id: MONDO:0004204
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A squamous papilloma that involves the zone of skin.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"squamous papilloma","termid":"MONDO:0001825"},{"relation_name":"is_a","term_name":"skin papilloma","termid":"MONDO:0002536"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"squamous cell skin papilloma","secondary_identifiers":["NCIT:C4462","UMLS:C0345983","MEDGEN:83397","SCTID:254661000","DOID:7380"],"synonyms":[{"name":"Dyskeratotic papilloma of skin","type":"exact"},{"name":"Dyskeratotic papilloma of the skin","type":"exact"},{"name":"Dyskeratotic skin papilloma","type":"exact"},{"name":"hyperkeratotic papilloma of skin","type":"exact"},{"name":"hyperkeratotic papilloma of the skin","type":"exact"},{"name":"hyperkeratotic skin papilloma","type":"exact"},{"name":"parakeratotic papilloma of skin","type":"exact"},{"name":"parakeratotic papilloma of the skin","type":"exact"},{"name":"parakeratotic skin papilloma","type":"exact"},{"name":"squamous cell papilloma of skin","type":"exact"},{"name":"squamous cell papilloma of the skin","type":"exact"},{"name":"squamous cell skin papilloma","type":"exact"},{"name":"zone of skin squamous papilloma","type":"exact"}],"termid":"MONDO:0004204","xrefs":{"Monarch":{"xref_id":"0004204"}}}


id: GO:1901626
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of postsynaptic membrane organization.","definition_xrefs":["PMID:22426000","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular component organization","termid":"GO:0051128"},{"relation_name":"regulates","term_name":"postsynaptic membrane organization","termid":"GO:0001941"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0061024","GO:0008150"],"is_obsolete":false,"name":"regulation of postsynaptic membrane organization","synonyms":[{"name":"regulation of post-synaptic membrane organization","type":"exact"},{"name":"regulation of postsynaptic membrane organisation","type":"exact"}],"termid":"GO:1901626"}


id: MONDO:0003985
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A lymphoma that affects the structures of the chest wall. The majority of cases are diffuse large B-cell lymphomas.","definition_xrefs":["NCIT:C6712"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lymphoma","termid":"MONDO:0005062"},{"relation_name":"is_a","term_name":"malignant neoplasm of chest wall","termid":"MONDO:0021323"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0005570"],"is_obsolete":false,"name":"chest wall lymphoma","secondary_identifiers":["DOID:6758","UMLS:C1332933","MEDGEN:232053"],"synonyms":[{"name":"chest wall cancer","type":"broad"},{"name":"chest wall lymphoma","type":"exact"},{"name":"lymphoma of chest wall","type":"exact"},{"name":"lymphoma of the chest wall","type":"exact"},{"name":"malignant tumour of chest wall","type":"related"},{"name":"primary chest wall lymphoma","type":"exact"}],"termid":"MONDO:0003985","xrefs":{"Monarch":{"xref_id":"0003985"}}}


id: PBO:0083450
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified gene COX20/YDR231C","termid":"PBO:0083450"}


id: MONDO:0030897
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Lessel-Kreienkamp syndrome","secondary_identifiers":["UMLS:C5436892","GARD:18538","MEDGEN:1762595","OMIM:619149"],"synonyms":[{"name":"LESKRES","type":"exact"}],"termid":"MONDO:0030897","xrefs":{"Monarch":{"xref_id":"0030897"}}}


id: MONDO:0030430
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spermatogenic failure","termid":"MONDO:0004983"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"spermatogenic failure 56","secondary_identifiers":["MEDGEN:1794188","OMIM:619515","DOID:0112336","UMLS:C5561978"],"synonyms":[{"name":"SPGF56","type":"exact"}],"termid":"MONDO:0030430","xrefs":{"Monarch":{"xref_id":"0030430"}}}


id: PBO:0086470
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative mitochondrial protein of unknown function","termid":"PBO:0086470"}


id: RO:0002443
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"An interaction relationship between two organisms living together in more or less intimate association in a relationship in which association is disadvantageous or destructive to one of the organisms (GO).","direct_ancestors":[{"relation_name":"is_a","term_name":"symbiotically_interacts_with","termid":"RO:0002440"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interacts_with_via_parasite-host_interaction","termid":"RO:0002443"}


id: PBO:0017660
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GPI-phospholipase A2 activity regulator Pga3 (predicted)","termid":"PBO:0017660"}


id: PBO:0064453
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein O-fucosyltransferase 2","termid":"PBO:0064453"}


id: GO:0033245
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving any antibiotic that contains the condensed beta-lactamthiazolidine ring system.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of amine metabolic process","termid":"GO:0033239"},{"relation_name":"is_a","term_name":"regulation of penicillin metabolic process","termid":"GO:0033244"},{"relation_name":"is_a","term_name":"negative regulation of amide metabolic process","termid":"GO:0034249"},{"relation_name":"is_a","term_name":"negative regulation of sulfur metabolic process","termid":"GO:0051175"},{"relation_name":"is_a","term_name":"negative regulation of small molecule metabolic process","termid":"GO:0062014"},{"relation_name":"negatively_regulates","term_name":"penicillin metabolic process","termid":"GO:0042316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006790"},{"rel_name":"negatively_regulates","termid":"GO:0019748"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006790"},{"rel_name":"negatively_regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0019748","GO:0006790","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"negative regulation of penicillin metabolic process","synonyms":[{"name":"negative regulation of penicillin metabolism","type":"exact"}],"termid":"GO:0033245"}


id: PBO:0088647
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CLRC ubiquitin ligase complex WD repeat subunit Raf1/Dos1","termid":"PBO:0088647"}


id: MONDO:0012624
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare disorder leading to a deficiency of complex I of the respiratory chain and is characterized by neurological dysfunction, hepatic failure and cardiomyopathy.","definition_xrefs":["Orphanet:99901"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disorder of fatty acid oxidation and ketogenesis","termid":"MONDO:0017713"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0002525"],"is_obsolete":false,"name":"acyl-CoA dehydrogenase 9 deficiency","secondary_identifiers":["SCTID:725046003","DOID:0112072","MEDGEN:1648400","GARD:12986","OMIM:611126","MESH:C567006","UMLS:C4747517"],"synonyms":[{"name":"ACAD9 deficiency","type":"exact"},{"name":"acyl-CoA dehydrogenase 9 deficiency","type":"exact"},{"name":"mitochondrial complex I deficiency due to ACAD9 deficiency","type":"exact"},{"name":"mitochondrial complex I deficiency, nuclear type 20","type":"exact"}],"termid":"MONDO:0012624","xrefs":{"Monarch":{"xref_id":"0012624"}}}


id: PBO:0109952
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 51 member A","termid":"PBO:0109952"}


id: PBO:0072207
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S18 pseudogene 6","termid":"PBO:0072207"}


id: GO:0044028
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. An decrease in the epigenetic methylation of cytosine and adenosine residues in DNA.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete DNA hypomethylation (obsolete GO:0044028)","termid":"GO:0044028"}


id: PBO:0064178
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase A2 group XE, pseudogene","termid":"PBO:0064178"}


id: PBO:0043823
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcineurin like phosphoesterase domain containing 1","termid":"PBO:0043823"}


id: GO:0000402
data:
  {"annotated_genes":["SJAG_04752"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[75636],"is_not":false,"summary":null,"term":"GO:0000402"}]},"cv_name":"molecular_function","definition":"Binding to a DNA segment containing the crossed form of a four-way junction, also known as a Holliday junction, a structure where two DNA double strands are held together by reciprocal exchange of two of the four strands, one strand each from the two original helices. The crossed form of a four-way junction cannot be diagrammed without any of the strands crossing over, and instead contains a single crossover between two of the strands.","definition_xrefs":["PMID:15563464","GOC:krc","ISBN:0815332181"],"direct_ancestors":[{"relation_name":"is_a","term_name":"four-way junction DNA binding","termid":"GO:0000400"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04752":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003677"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003677","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"crossed form four-way junction DNA binding","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"crossed form Holliday junction binding","type":"exact"}],"termid":"GO:0000402","terms_by_termid":{"GO:0000402":null}}


id: MONDO:0001326
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Death of pulp tissue with or without bacterial invasion. When the necrosis is due to ischemia with superimposed bacterial infection, it is referred to as pulp gangrene. When the necrosis is non-bacterial in origin, it is called pulp mummification.","definition_xrefs":["MESH:D003790"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dental pulp disorder","termid":"MONDO:0003394"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dental pulp necrosis","secondary_identifiers":["DOID:11623","ICD10CM:K04.1","ICD9:522.1","UMLS:C0011407","MEDGEN:8306","SCTID:42711005"],"synonyms":[{"name":"necrosis of pulp","type":"exact"},{"name":"necrosis of the pulp","type":"exact"},{"name":"necrotic pulp","type":"exact"},{"name":"pulp necrosis","type":"exact"}],"termid":"MONDO:0001326","xrefs":{"Monarch":{"xref_id":"0001326"}}}


id: PBO:0067200
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 265, pseudogene","termid":"PBO:0067200"}


id: PBO:0003010
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-lactate dehydrogenase (predicted)","termid":"PBO:0003010"}


id: PBO:0089698
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BRO1 domain protein Bro1","termid":"PBO:0089698"}


id: MONDO:0000150
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete spondylometaphyseal dysplasia (obsolete MONDO:0000150)","termid":"MONDO:0000150","xrefs":{"Monarch":{"xref_id":"0000150"}}}


id: FYPO:0000426
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which endocytosis is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vesicle-mediated transport during vegetative growth","termid":"FYPO:0006432"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000257","FYPO:0000002","FYPO:0001320","FYPO:0001312"],"is_obsolete":false,"name":"normal endocytosis","synonyms":[{"name":"endocytosis: normal","type":"related"},{"name":"normal endocytosis during mitotic cell cycle","type":"related"},{"name":"normal endocytosis during vegetative growth","type":"exact"}],"termid":"FYPO:0000426"}


id: MONDO:0001350
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant neoplasm involving the parametrium.","direct_ancestors":[{"relation_name":"is_a","term_name":"broad ligament malignant neoplasm","termid":"MONDO:0001108"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"parametrium malignant neoplasm","secondary_identifiers":["ICD9:183.4","SCTID:448674007","MEDGEN:509332","DOID:11746","UMLS:C0153581"],"synonyms":[{"name":"cancer of parametrium","type":"exact"},{"name":"malignant neoplasm of parametrium","type":"exact"},{"name":"malignant parametrium neoplasm","type":"exact"},{"name":"parametrium cancer","type":"exact"}],"termid":"MONDO:0001350","xrefs":{"Monarch":{"xref_id":"0001350"}}}


id: GO:0036433
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: di-trans, octa-cis-undecaprenol + ATP = di-trans,octa-cis-undecaprenyl phosphate + ADP + H+.","definition_xrefs":["RHEA:28122"],"direct_ancestors":[{"relation_name":"is_a","term_name":"undecaprenol kinase activity","termid":"GO:0009038"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0016301","GO:0003824"],"is_obsolete":false,"name":"di-trans, poly-cis-undecaprenol kinase activity","secondary_identifiers":["KEGG_REACTION:R05626","EC:2.7.1.66","MetaCyc:UNDECAPRENOL-KINASE-RXN"],"synonyms":[{"name":"ditrans,polycis-undecaprenol kinase activity","type":"related"}],"termid":"GO:0036433"}


id: PR:O42656
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ric1 gene.","definition_xrefs":["UniProtKB:O42656","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"guanine nucleotide exchange factor subunit ric1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1851.04c","synonyms":[{"name":"Spom972h-ric1","type":"exact"},{"name":"protein ric1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O42656"}


id: GO:0097172
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving N-acetylmuramic acid (MurNAc), a monosaccharide derivative of N-acetylglucosamine.","definition_xrefs":["GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic acid metabolic process","termid":"GO:0019752"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"N-acetylmuramic acid metabolic process","synonyms":[{"name":"N-acetylmuramate metabolic process","type":"exact"},{"name":"N-acetylmuramate metabolism","type":"exact"},{"name":"N-acetylmuramic acid metabolism","type":"exact"}],"termid":"GO:0097172"}


id: MONDO:1012152
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"megakaryoblastic leukemia, non-human animal","termid":"MONDO:1011810"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"megakaryoblastic leukemia, dog","secondary_identifiers":["OMIA:000630-9615"],"termid":"MONDO:1012152","xrefs":{"Monarch":{"xref_id":"1012152"}}}


id: GO:0170005
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and increases the activity of cyclic nucleotide phosphodiesterase.","definition_xrefs":["PMID:6667031","PMID:6259174","PMID:6087882"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme activator activity","termid":"GO:0008047"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0140677"}],"interesting_parent_ids":["GO:0003674","GO:0030234","GO:0098772","GO:0140677"],"is_obsolete":false,"name":"cyclic nucleotide phosphodiesterase activator activity","termid":"GO:0170005"}


id: FYPO:0000788
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 14 of histone H3 is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone H3 acetylation during vegetative growth","termid":"FYPO:0002361"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0002494","FYPO:0001985","FYPO:0000002","FYPO:0002274","FYPO:0001320"],"is_obsolete":false,"name":"abnormal histone H3-K14 acetylation during vegetative growth","synonyms":[{"name":"abnormal histone H3-K14 acetylation during mitotic cell cycle","type":"related"},{"name":"abnormal histone H3K14 acetylation during vegetative growth","type":"exact"}],"termid":"FYPO:0000788"}


id: GO:0002419
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed killing of a tumor cell by a T cell through the release of granules containing cytotoxic mediators or through the engagement of death receptors.","definition_xrefs":["PMID:16730260","GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"T cell mediated cytotoxicity","termid":"GO:0001913"},{"relation_name":"is_a","term_name":"T cell mediated immune response to tumor cell","termid":"GO:0002424"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"T cell mediated cytotoxicity directed against tumor cell target","synonyms":[{"name":"T lymphocyte mediated cytotoxicity directed against tumor cell target","type":"exact"},{"name":"T-cell mediated cytotoxicity directed against tumor cell target","type":"exact"},{"name":"T-lymphocyte mediated cytotoxicity directed against tumor cell target","type":"exact"}],"termid":"GO:0002419"}


id: PBO:0088384
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial N(5)-glutamine methyltransferase","termid":"PBO:0088384"}


id: PBO:0073341
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serpin family B member 3","termid":"PBO:0073341"}


id: PBO:0040961
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCL2 interacting protein 3 pseudogene 32","termid":"PBO:0040961"}


id: PBO:0039000
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin filament associated protein 1 like 1","termid":"PBO:0039000"}


id: MONDO:1011514
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Glaucoma that occurs in owls.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bird disease","termid":"MONDO:0024905"},{"relation_name":"is_a","term_name":"glaucoma, non-human animal","termid":"MONDO:1011457"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glaucoma, owls","secondary_identifiers":["OMIA:000411-30458"],"termid":"MONDO:1011514","xrefs":{"Monarch":{"xref_id":"1011514"}}}


id: MONDO:0001141
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"As accumulation of granulation tissue in the middle ear that results from the degeneration of blood and a chronic inflammatory response.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"otitis media","termid":"MONDO:0005441"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"middle ear cholesterol granuloma","secondary_identifiers":["UMLS:C0155492","DOID:10852","ICD9:385.82","MEDGEN:56364","SCTID:28371001"],"synonyms":[{"name":"cholesterin granuloma","type":"exact"},{"name":"cholesterin granuloma of middle ear","type":"exact"}],"termid":"MONDO:0001141","xrefs":{"Monarch":{"xref_id":"0001141"}}}


id: GO:0019184
data:
  {"annotated_genes":["SJAG_00988","SJAG_03494","SJAG_04031","SJAG_01351","SJAG_00469","SJAG_02599","SJAG_00792","SJAG_04032"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[94434,105751,94441],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031169"},{"annotations":[79115,57802,108799,77670],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006750"},{"annotations":[94387],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:1905569"}]},"cv_name":"biological_process","definition":"The biosynthetic process in which peptide bond formation occurs in the absence of the translational machinery. Examples include the synthesis of antibiotic peptides, and glutathione.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide biosynthetic process","termid":"GO:0043043"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00469":null,"SJAG_00792":null,"SJAG_00988":null,"SJAG_01351":null,"SJAG_02599":null,"SJAG_03494":null,"SJAG_04031":null,"SJAG_04032":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"nonribosomal peptide biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null},"synonyms":[{"name":"non-ribosomal peptide biosynthesis","type":"exact"},{"name":"non-ribosomal peptide biosynthetic process","type":"exact"},{"name":"non-ribosomal peptide formation","type":"exact"},{"name":"non-ribosomal peptide synthesis","type":"exact"},{"name":"nonribosomal peptide anabolism","type":"exact"},{"name":"nonribosomal peptide biosynthesis","type":"exact"},{"name":"nonribosomal peptide formation","type":"exact"},{"name":"nonribosomal peptide synthesis","type":"exact"},{"name":"nonribosomal peptide synthetase","type":"related"}],"termid":"GO:0019184","terms_by_termid":{"GO:0006750":null,"GO:0031169":null,"GO:1905569":null}}


id: MONDO:0030677
data:
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id: GO:0050789
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id: FYPO:0002887
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id: PBO:0063077
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id: MONDO:0017155
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id: PBO:0046985
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id: GO:0035553
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id: PBO:0084564
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id: MONDO:0017111
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id: GO:1900535
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id: MONDO:0958302
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id: PBO:0086617
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id: MONDO:0014318
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id: PBO:0083733
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id: PBO:0061693
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id: PBO:0053932
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id: GO:0051939
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of gamma-aminobutyric acid (GABA, 4-aminobutyrate) into a cell or organelle.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acidic amino acid transport","termid":"GO:0015800"},{"relation_name":"is_a","term_name":"gamma-aminobutyric acid transport","termid":"GO:0015812"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"gamma-aminobutyric acid import","synonyms":[{"name":"4-aminobutyrate import","type":"exact"},{"name":"GABA import","type":"exact"},{"name":"gamma-aminobutyrate import","type":"exact"},{"name":"gamma-aminobutyric acid uptake","type":"exact"}],"termid":"GO:0051939"}


id: GO:0110093
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The area of a motile nucleus furthest from the direction of movement.","definition_xrefs":["PMID:24335254","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"nucleus","termid":"GO:0005634"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005575","GO:0005634"],"is_obsolete":false,"name":"nucleus lagging edge","termid":"GO:0110093"}


id: GO:0008547
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: GTP + H2O = GDP + phosphate. A GTPase involved in protein synthesis. In the initiation factor complex, it is IF-2b (98 kDa) that binds GTP and subsequently hydrolyzes it in prokaryotes. In eukaryotes, it is eIF-2 (150 kDa) that binds GTP. In the elongation phase, the GTP-hydrolyzing proteins are the EF-Tu polypeptide of the prokaryotic transfer factor (43 kDa), the eukaryotic elongation factor EF-1a (53 kDa), the prokaryotic EF-G (77 kDa), the eukaryotic EF-2 (70-110 kDa) and the signal recognition particle that play a role in endoplasmic reticulum protein synthesis (325 kDa). EF-Tu and EF1a catalyze binding of aminoacyl-tRNA to the ribosomal A-site, while EF-G and EF-2 catalyze the translocation of peptidyl-tRNA from the A-site to the P-site. GTPase activity is also involved in polypeptide release from the ribosome with the aid of the pRFs and eRFs.","definition_xrefs":["MetaCyc:3.6.1.48-RXN","EC:3.6.5.3"],"gene_count":0,"genotype_count":0,"name":"obsolete protein-synthesizing GTPase activity (obsolete GO:0008547)","synonyms":[{"name":"protein-synthesizing GTPase activity","type":"exact"}],"termid":"GO:0008547"}


id: MONDO:0006734
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A non-metastasizing neoplasm arising from the wall of the duodenum.","definition_xrefs":["NCIT:C4775"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tumor of duodenum","termid":"MONDO:0021375"},{"relation_name":"is_a","term_name":"benign neoplasm of small intestine","termid":"MONDO:0021501"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"benign duodenal neoplasm","secondary_identifiers":["EFO:1000907","MEDGEN:96924","MedDRA:10004251","MESH:D004379","UMLS:C0496869","MONDO:0021504","SCTID:92080005","DOID:1737"],"synonyms":[{"name":"benign duodenal neoplasm","type":"exact"},{"name":"benign duodenal tumor","type":"exact"},{"name":"benign duodenal tumour","type":"exact"},{"name":"benign neoplasm of duodenum","type":"exact"},{"name":"benign neoplasm of the duodenum","type":"exact"},{"name":"benign tumor of duodenum","type":"exact"},{"name":"benign tumor of the duodenum","type":"exact"},{"name":"benign tumour of duodenum","type":"exact"},{"name":"benign tumour of the duodenum","type":"exact"},{"name":"duodenal benign neoplasm","type":"related"},{"name":"duodenum benign neoplasm","type":"exact"},{"name":"neoplasm of the duodenum","type":"broad"}],"termid":"MONDO:0006734","xrefs":{"Monarch":{"xref_id":"0006734"}}}


id: PBO:0069699
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 978, pseudogene","termid":"PBO:0069699"}


id: GO:0097023
data:
  {"annotated_genes":["SJAG_04242"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[114988],"is_not":false,"summary":null,"term":"GO:0097023"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: D-fructose-6-phosphate = dihydroxyacetone + D-glyceraldehyde-3-phosphate.","definition_xrefs":["PMID:21290439","GOC:imk","PMID:11120740"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde-lyase activity","termid":"GO:0016832"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04242":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"fructose 6-phosphate aldolase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["RHEA:28002"],"termid":"GO:0097023","terms_by_termid":{"GO:0097023":null}}


id: PBO:0080040
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin specific peptidase 17 like family member 26","termid":"PBO:0080040"}


id: PBO:0052753
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 18 pseudogene 45","termid":"PBO:0052753"}


id: GO:0046163
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of heme C, a derivative of heme found in cytochromes c, b4, and f.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heme catabolic process","termid":"GO:0042167"},{"relation_name":"is_a","term_name":"heme C metabolic process","termid":"GO:0046162"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0033013"}],"interesting_parent_ids":["GO:0033013","GO:0008150"],"is_obsolete":false,"name":"heme C catabolic process","synonyms":[{"name":"haem C catabolic process","type":"exact"},{"name":"haem C catabolism","type":"exact"},{"name":"heme C breakdown","type":"exact"},{"name":"heme C catabolism","type":"exact"},{"name":"heme C degradation","type":"exact"}],"termid":"GO:0046163"}


id: GO:0015298
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + cation(in) = solute(in) + cation(out).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete solute:monoatomic cation antiporter activity (obsolete GO:0015298)","synonyms":[{"name":"solute:cation antiporter activity","type":"exact"}],"termid":"GO:0015298"}


id: PBO:0001085
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.7.4.2","termid":"PBO:0001085"}


id: GO:0071620
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process of introducing a phosphate group onto a serine residue at position 5 within the heptapeptide repeat (YSPTSPS) of the C-terminal domain of RNA polymerase II. Typically, phosphorylation of serine 5 (Ser5) occurs near the 5' ends of genes. It is generally still observed in the middle of genes, overlapping with phosphorylation of serine 2, but is generally not present at the 3' ends of genes. In vivo, Ser5 phosphorylation occurs primarily through the action of TFIIH (KIN28 in S. cerevisiae, CKD7 in metazoans).","definition_xrefs":["GOC:krc","PMID:17079683"],"gene_count":0,"genotype_count":0,"name":"obsolete phosphorylation of RNA polymerase II C-terminal domain serine 5 residues (obsolete GO:0071620)","termid":"GO:0071620"}


id: PBO:0086243
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that may act as a chaperone for cytochrome c oxidase subunits; conserved protein; may act as a chaperone in the degradation of misfolded or unassembled cytochrome c oxidase subunits; localized to matrix face of the mitochondrial inner membrane; member of the AAA family but lacks a protease domain","termid":"PBO:0086243"}


id: MONDO:0012547
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Noonan syndrome in which the cause of the disease is a mutation in the SOS1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Noonan syndrome","termid":"MONDO:0018997"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005267","MONDO:0005046"],"is_obsolete":false,"name":"Noonan syndrome 4","secondary_identifiers":["UMLS:C1853120","OMIM:610733","GARD:10699","MEDGEN:339908","MESH:C548082","NCIT:C176932","DOID:0060582"],"synonyms":[{"name":"NS4","type":"exact"},{"name":"Noonan syndrome 4","type":"exact"},{"name":"Noonan syndrome caused by mutation in SOS1","type":"exact"},{"name":"Noonan syndrome type 4","type":"exact"},{"name":"SOS1 Noonan syndrome","type":"exact"},{"name":"SOS1 gene related Noonan syndrome","type":"related"}],"termid":"MONDO:0012547","xrefs":{"Monarch":{"xref_id":"0012547"}}}


id: MOD:01977
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks either an L-glutamine residue or an L-glutamic acid residue with an L-serine residue by an ester bond  to form O-(L-isoglutamyl)-L-serine.","definition_xrefs":["PubMed:17051152","RESID:AA0597"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified residue that can arise from different natural residues","termid":"MOD:00859"},{"relation_name":"is_a","term_name":"ester crosslinked residues","termid":"MOD:00885"},{"relation_name":"is_a","term_name":"crosslinked L-serine residue","termid":"MOD:02055"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"O-(L-isoglutamyl)-L-serine","synonyms":[{"name":"(2S)-2-amino-5-[(2S)-2-amino-2-carboxyethoxy]-5-oxopentanoic acid","type":"exact"},{"name":"O(beta)-(gamma-glutamyl)serine","type":"exact"},{"name":"O-(L-isoglutamyl)-L-serine","type":"exact"},{"name":"O3-(isoglutamyl)-serine","type":"exact"}],"termid":"MOD:01977"}


id: PBO:0033806
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-telomeric_3'_overhang_absent","termid":"PBO:0033806"}


id: GO:1900871
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The covalent alteration within the chloroplast of one or more nucleotides within an mRNA to produce an mRNA molecule with a sequence that differs from that coded genetically.","definition_xrefs":["PMID:1653905","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA modification","termid":"GO:0016556"},{"relation_name":"is_a","term_name":"chloroplast RNA modification","termid":"GO:1900865"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0016071"}],"interesting_parent_ids":["GO:0008150","GO:0016071"],"is_obsolete":false,"name":"chloroplast mRNA modification","synonyms":[{"name":"chloroplast mRNA editing","type":"narrow"},{"name":"mRNA editing in chloroplast","type":"narrow"}],"termid":"GO:1900871"}


id: GO:0099161
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of presynaptic dense core granule exocytosis.","definition_xrefs":["PMID:17881523","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"presynaptic modulation of chemical synaptic transmission","termid":"GO:0099171"},{"relation_name":"is_a","term_name":"regulation of calcium ion-dependent exocytosis of neurotransmitter","termid":"GO:1903233"},{"relation_name":"is_a","term_name":"regulation of dense core granule exocytosis","termid":"GO:1905413"},{"relation_name":"regulates","term_name":"presynaptic dense core vesicle exocytosis","termid":"GO:0099525"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0006810","GO:0023052","GO:0016192","GO:0008150"],"is_obsolete":false,"name":"regulation of presynaptic dense core granule exocytosis","synonyms":[{"name":"regulation of presynaptic dense core vesicle exocytosis","type":"exact"}],"termid":"GO:0099161"}


id: GO:0016036
data:
  {"annotated_genes":["SJAG_03519","SJAG_01970","SJAG_00233","SJAG_04067"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72478,107937,113723,113724],"is_not":false,"summary":null,"term":"GO:0016036"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of phosphate.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to starvation","termid":"GO:0009267"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00233":null,"SJAG_01970":null,"SJAG_03519":null,"SJAG_04067":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to phosphate starvation","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0016036","terms_by_termid":{"GO:0016036":null}}


id: PBO:0073959
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 22 member 8","termid":"PBO:0073959"}


id: MONDO:1010939
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Malignant histiocytosis that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"malignant histiocytosis, non-human animal","termid":"MONDO:1010210"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"malignant histiocytosis, dog","secondary_identifiers":["OMIA:000620-9615"],"termid":"MONDO:1010939","xrefs":{"Monarch":{"xref_id":"1010939"}}}


id: PBO:0041149
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"basic transcription factor 3 pseudogene 4","termid":"PBO:0041149"}


id: PR:O13656
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A mitochondrial import receptor subunit TOM40 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02828","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial import receptor subunit tom40 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC27B12.13","secondary_identifiers":["UniProtKB:O13656"],"synonyms":[{"name":"Spom972h-TOMM40","type":"exact"},{"name":"translocase of outer membrane 40 kDa subunit (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13656"}


id: PBO:0054806
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2219","termid":"PBO:0054806"}


id: PBO:0083684
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Endosomal subunit of membrane-associated retromer complex; required for retrograde transport; receptor that recognizes retrieval signals on cargo proteins, forms subcomplex with Vps26p and Vps29p that selects cargo proteins for retrieval; interacts with Ypt7p; overexpression of wild-type human VPS35 or Parkinson's-associated vps35-D686N or vps35-P299S variants complements Ni2+ resistance and Cd2+ sensitivity of yeast vps35 null mutant","termid":"PBO:0083684"}


id: PBO:0078913
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Gln (anticodon TTG) 3-2","termid":"PBO:0078913"}


id: PBO:0057082
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 181b-1","termid":"PBO:0057082"}


id: PBO:0055170
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2594","termid":"PBO:0055170"}


id: PBO:0116308
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2-aminoadipate transaminase","termid":"PBO:0116308"}


id: PBO:0083497
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified gene YJL210W/PEX2","termid":"PBO:0083497"}


id: GO:0003042
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is triggered by carotid body-vasomotor excitation and results in a decrease in the diameter of an artery during the chemoreceptor response to decreased blood pressure.","definition_xrefs":["ISBN:0323031951"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vasoconstriction of artery involved in chemoreceptor response to lowering of systemic arterial blood pressure","termid":"GO:0002012"},{"relation_name":"part_of","term_name":"regulation of systemic arterial blood pressure by carotid body chemoreceptor signaling","termid":"GO:0003027"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"vasoconstriction of artery involved in carotid body chemoreceptor response to lowering of systemic arterial blood pressure","synonyms":[{"name":"vasoconstriction of artery during carotid body chemoreceptor response to lowering of systemic arterial blood pressure","type":"related"}],"termid":"GO:0003042"}


id: MONDO:0003112
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant germ cell tumor that arises from the stomach. It includes choriocarcinoma and immature teratoma.","definition_xrefs":["NCIT:C5486"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gastric cancer","termid":"MONDO:0001056"},{"relation_name":"is_a","term_name":"extragonadal germ cell cancer","termid":"MONDO:0003113"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0004335"],"is_obsolete":false,"name":"malignant gastric germ cell tumor","secondary_identifiers":["MEDGEN:233663","DOID:4716","UMLS:C1334584"],"synonyms":[{"name":"germ cell tumor of the stomach","type":"exact"},{"name":"germ cell tumour of the stomach","type":"exact"},{"name":"malignant gastric germ cell neoplasm","type":"exact"},{"name":"malignant gastric germ cell tumor","type":"exact"},{"name":"malignant germ cell neoplasm of stomach","type":"exact"},{"name":"malignant germ cell neoplasm of the stomach","type":"exact"},{"name":"malignant germ cell tumor of stomach","type":"exact"},{"name":"malignant germ cell tumor of the stomach","type":"exact"},{"name":"malignant germ cell tumour of stomach","type":"exact"},{"name":"malignant germ cell tumour of the stomach","type":"exact"}],"termid":"MONDO:0003112","xrefs":{"Monarch":{"xref_id":"0003112"}}}


id: PR:Q9P7U1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC977.15 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P7U1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized AIM2 family protein C977.15 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC977.15","synonyms":[{"name":"Spom972h-SPAC977.15","type":"exact"}],"termid":"PR:Q9P7U1"}


id: PBO:0111895
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Atf-CREB subfamily","termid":"PBO:0111895"}


id: PBO:0075986
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STAU2 antisense RNA 1","termid":"PBO:0075986"}


id: FYPO:0006189
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to actin cables is normal (i.e. indistinguishable from wild type). Actin cables are parallel actin filament bundles nucleated by formin, and are the most common form of actin filament bundles found in yeasts.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to actin cytoskeleton during vegetative growth","termid":"FYPO:0003441"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000257","FYPO:0000002","FYPO:0001312","FYPO:0001320"],"is_obsolete":false,"name":"normal protein localization to actin cable","synonyms":[{"name":"normal protein localisation to actin cable","type":"exact"},{"name":"normal protein localization to actin cable during mitotic cell cycle","type":"related"},{"name":"normal protein localization to actin cable during vegetative growth","type":"exact"},{"name":"normal protein localization to formin-nucleated actin cable","type":"exact"}],"termid":"FYPO:0006189"}


id: MONDO:0024488
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A modifier that can be applied to a tumor class describing abnormal tumor histology or morphology. It is an indicator of how quickly a tumor is likely to grow and spread","direct_ancestors":[{"relation_name":"is_a","term_name":"disease characteristic","termid":"MONDO:0021125"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tumor grading characteristic","termid":"MONDO:0024488","xrefs":{"Monarch":{"xref_id":"0024488"}}}


id: GO:1904801
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of neuron remodeling.","definition_xrefs":["GO_REF:0000058","PMID:21609829","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of neuron maturation","termid":"GO:0014042"},{"relation_name":"is_a","term_name":"regulation of neuron remodeling","termid":"GO:1904799"},{"relation_name":"positively_regulates","term_name":"neuron remodeling","termid":"GO:0016322"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of neuron remodeling","synonyms":[{"name":"activation of axon pruning","type":"narrow"},{"name":"activation of neuron remodeling","type":"narrow"},{"name":"activation of neuronal remodeling","type":"narrow"},{"name":"positive regulation of axon pruning","type":"narrow"},{"name":"positive regulation of neuron remodelling","type":"exact"},{"name":"positive regulation of neuronal remodeling","type":"exact"},{"name":"up regulation of axon pruning","type":"narrow"},{"name":"up regulation of neuron remodeling","type":"exact"},{"name":"up regulation of neuronal remodeling","type":"exact"},{"name":"up-regulation of axon pruning","type":"narrow"},{"name":"up-regulation of neuron remodeling","type":"exact"},{"name":"up-regulation of neuronal remodeling","type":"exact"},{"name":"upregulation of axon pruning","type":"narrow"},{"name":"upregulation of neuron remodeling","type":"exact"},{"name":"upregulation of neuronal remodeling","type":"exact"}],"termid":"GO:1904801"}


id: PBO:0045383
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DPP4 divergent transcript","termid":"PBO:0045383"}


id: PBO:0051751
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inversin","termid":"PBO:0051751"}


id: GO:0008498
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. The trans-bilayer migration of phospholipids accelerated by a phospholipid scramblase upon binding calcium ions.","definition_xrefs":["OMIM:604170"],"gene_count":0,"genotype_count":0,"name":"obsolete phospholipid scrambling (obsolete GO:0008498)","synonyms":[{"name":"phospholipid scrambling","type":"exact"}],"termid":"GO:0008498"}


id: MONDO:0021783
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Inflammation of the throat due to Streptococcus pyogenes.","definition_xrefs":["NCIT:C116003"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pharyngitis","termid":"MONDO:0002258"},{"relation_name":"is_a","term_name":"streptococcal infection","termid":"MONDO:0021680"},{"relation_name":"is_a","term_name":"respiratory tract infectious disorder","termid":"MONDO:0024355"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"streptococcal sore throat","secondary_identifiers":["UMLS:C0036689","MEDGEN:508129","ICD9:034.0","SCTID:43878008"],"synonyms":[{"name":"Septic sore throat","type":"related"},{"name":"Strep throat","type":"related"},{"name":"Strept throat","type":"related"},{"name":"Streptococcal Pharyngitis","type":"related"},{"name":"Streptococcal angina","type":"related"},{"name":"Streptococcal pharyngitis","type":"related"},{"name":"Streptococcal sore throat","type":"related"},{"name":"strep throat","type":"exact"},{"name":"streptococcal pharyngitis","type":"exact"}],"termid":"MONDO:0021783","xrefs":{"Monarch":{"xref_id":"0021783"}}}


id: GO:0007512
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the adult heart over time, from its formation to the mature structure.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heart development","termid":"GO:0007507"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"adult heart development","synonyms":[{"name":"adult cardiac development","type":"related"}],"termid":"GO:0007512"}


id: PBO:0031181
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_acid_phosphatase_activity","termid":"PBO:0031181"}


id: PBO:0003645
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mannosyltransferase complex subunit Alg2 (predicted)","termid":"PBO:0003645"}


id: PBO:0052593
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"karyopherin subunit alpha 2 pseudogene 2","termid":"PBO:0052593"}


id: PBO:0076037
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine kinase 33 pseudogene 1","termid":"PBO:0076037"}


id: PBO:0045421
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"divergent-paired related homeobox pseudogene 1","termid":"PBO:0045421"}


id: GO:0071081
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alpha3-beta1 integrin complex bound to the tetraspanin CD63.","definition_xrefs":["PMID:7629079"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005886"],"is_obsolete":false,"name":"alpha3-beta1 integrin-CD63 complex","synonyms":[{"name":"ITGA3-ITGB1-CD63 complex","type":"narrow"}],"termid":"GO:0071081"}


id: MONDO:0003040
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The loss of access to memories that were previously encoded; this disorder is most commonly preceded by trauma, including physical brain injury, stroke, or seizure, but may also be psychogenic in origin. Memory loss may be temporary or permanent, but the ability to encode new memories or skills is not generally affected.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amnestic disorder","termid":"MONDO:0001152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002039"}],"interesting_parent_ids":["MONDO:0002039"],"is_obsolete":false,"name":"retrograde amnesia","secondary_identifiers":["MEDGEN:264","UMLS:C0002624","DOID:4543","ICD10CM:R41.2","icd11.foundation:1405777748","MESH:D000648"],"termid":"MONDO:0003040","xrefs":{"Monarch":{"xref_id":"0003040"}}}


id: GO:0016105
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of triterpenoid compounds, terpenoids with six isoprene units.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"triterpenoid metabolic process","termid":"GO:0006722"},{"relation_name":"is_a","term_name":"terpenoid catabolic process","termid":"GO:0016115"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"triterpenoid catabolic process","synonyms":[{"name":"triterpene catabolic process","type":"narrow"},{"name":"triterpene catabolism","type":"narrow"},{"name":"triterpenoid breakdown","type":"exact"},{"name":"triterpenoid catabolism","type":"exact"},{"name":"triterpenoid degradation","type":"exact"}],"termid":"GO:0016105"}


id: PBO:0050570
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hornerin","termid":"PBO:0050570"}


id: GO:0047276
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: beta-D-galactosyl-(1,4)-beta-N-acetyl-D-glucosaminyl-R + UDP-galactose = alpha-D-galactosyl-(1,3)-beta-D-galactosyl-(1,4)-beta-N-acetyl-D-glucosaminyl-R + UDP.","definition_xrefs":["RHEA:13013","EC:2.4.1.87"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-galactosyltransferase activity","termid":"GO:0035250"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016757","GO:0003824"],"is_obsolete":false,"name":"N-acetyllactosaminide 3-alpha-galactosyltransferase activity","secondary_identifiers":["GO:0003946","MetaCyc:2.4.1.151-RXN"],"synonyms":[{"name":"N-acetyllactosaminide alpha-1,3-galactosyltransferase activity","type":"exact"},{"name":"UDP-Gal:Gal-beta-1->4GlcNAc-R alpha-1->3-galactosyltransferase activity","type":"related"},{"name":"UDP-Gal:Galbeta1->4GlcNAc-R alpha1->3-galactosyltransferase activity","type":"related"},{"name":"UDP-Gal:N-acetyllactosaminide alpha(1,3)-galactosyltransferase activity","type":"related"},{"name":"UDP-Gal:N-acetyllactosaminide alpha-(1,3)-galactosyltransferase activity","type":"related"},{"name":"UDP-Gal:N-acetyllactosaminide alpha-1,3-D-galactosyltransferase activity","type":"related"},{"name":"UDP-Gal:beta-D-Gal(1,4)-D-GlcNAc alpha(1,3)-galactosyltransferase activity","type":"related"},{"name":"UDP-Gal:beta-D-Gal(1,4)-D-GlcNAc alpha-(1,3)-galactosyltransferase activity","type":"related"},{"name":"UDP-galactose-acetyllactosamine alpha-D-galactosyltransferase activity","type":"related"},{"name":"UDP-galactose:N-acetyllactosaminide 3-alpha-D-galactosyltransferase activity","type":"related"},{"name":"UDPgalactose:beta-D-galactosyl-beta-1,4-N-acetyl-D-glucosaminyl-glycopeptide alpha-1,3-D-galactosyltransferase activity","type":"related"},{"name":"alpha-galactosyltransferase activity","type":"related"},{"name":"beta-D-galactosyl-N-acetylglucosaminylglycopeptide alpha-1,3-galactosyltransferase activity","type":"related"},{"name":"beta-galactosyl-N-acetylglucosaminylglycopeptide alpha-1,3-galactosyltransferase activity","type":"exact"},{"name":"glucosaminylglycopeptide alpha-1,3-galactosyltransferase activity","type":"related"},{"name":"uridine diphosphogalactose-acetyllactosamine alpha-1->3-galactosyltransferase activity","type":"related"},{"name":"uridine diphosphogalactose-acetyllactosamine alpha1->3-galactosyltransferase activity","type":"related"},{"name":"uridine diphosphogalactose-acetyllactosamine galactosyltransferase activity","type":"related"},{"name":"uridine diphosphogalactose-galactosylacetylglucosaminylgalactosyl-glucosylceramide galactosyltransferase activity","type":"related"},{"name":"uridine diphosphogalactose-galactosylacetylglucosaminylgalactosylglucosylceramide galactosyltransferase activity","type":"related"}],"termid":"GO:0047276"}


id: FYPO:0007030
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the levels and proportions of monosaccharides in the cell wall are normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah","PMID:30389790"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal subcellular component during vegetative growth","termid":"FYPO:0001313"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000257"],"is_obsolete":false,"name":"normal cell wall monosaccharide composition during vegetative growth","synonyms":[{"name":"normal cell wall monosaccharide composition during mitotic cell cycle","type":"related"}],"termid":"FYPO:0007030"}


id: PATO:0001228
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001228 dull (obsolete PATO:0001228)","termid":"PATO:0001228"}


id: GO:0018207
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The modification of peptidyl-phenylalanine.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-amino acid modification","termid":"GO:0018193"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-phenylalanine modification","termid":"GO:0018207"}


id: PBO:0013756
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TATA-binding protein Knd1 (predicted)","termid":"PBO:0013756"}


id: PBO:0109602
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 90 member A3","termid":"PBO:0109602"}


id: SO:0000718
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A reading_frame that is interrupted by one or more stop codons; usually identified through inter-genomic sequence comparisons.","definition_xrefs":["SGD:rb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reading_frame","termid":"SO:0000717"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"blocked_reading_frame","synonyms":[{"name":"blocked reading frame","type":"exact"}],"termid":"SO:0000718"}


id: GO:1990444
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an F-box domain of a protein.","definition_xrefs":["GOC:bf","GOC:PARL","PMID:12628165","InterPro:IPR001810"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"F-box domain binding","termid":"GO:1990444"}


id: MONDO:0030326
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial DNA depletion syndrome","termid":"MONDO:0018158"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004069"],"is_obsolete":false,"name":"mitochondrial dna depletion syndrome 16B (neuroophthalmic type)","secondary_identifiers":["DOID:0070447","MEDGEN:1780329","OMIM:619425","UMLS:C5543632"],"synonyms":[{"name":"MTDPS16B","type":"exact"},{"name":"mitochondrial dna depletion syndrome 16B (neuroophthalmic type)","type":"exact"}],"termid":"MONDO:0030326","xrefs":{"Monarch":{"xref_id":"0030326"}}}


id: FYPO:0008081
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which the growth of a population of cells is decreased relative to normal in the vegetative growth phase of the life cycle when the population is co-cultured with wild-type cells. Decreased growth may reflect a reduced growth rate (i.e. slower growth), growth that occurs to a lesser extent than normal, or both.","definition_xrefs":["PMID:36302945"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased vegetative cell population growth","termid":"FYPO:0001355"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0002058","FYPO:0002060","FYPO:0002057","FYPO:0001985","FYPO:0000003","FYPO:0000139","FYPO:0005447"],"is_obsolete":false,"name":"decreased vegetative cell population growth when co-cultured with wild-type cells","synonyms":[{"name":"adaptive growth","type":"related"}],"termid":"FYPO:0008081"}


id: GO:0050419
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-hydroxymandelonitrile = 4-hydroxybenzaldehyde + hydrocyanate.","definition_xrefs":["RHEA:15977"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde-lyase activity","termid":"GO:0016832"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"hydroxymandelonitrile lyase activity","secondary_identifiers":["EC:4.1.2.11","MetaCyc:HYDROXYMANDELONITRILE-LYASE-RXN"],"synonyms":[{"name":"(S)-4-hydroxymandelonitrile 4-hydroxybenzaldehyde-lyase (cyanide-forming)","type":"related"},{"name":"(S)-4-hydroxymandelonitrile hydroxybenzaldehyde-lyase activity","type":"related"},{"name":"hydroxynitrile lyase activity","type":"broad"},{"name":"sorghum hydroxynitrile lyase activity","type":"related"}],"termid":"GO:0050419"}


id: FYPO:0006190
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A spindle phenotype in which the mitotic spindle is longer than normal during anaphase A.","definition_xrefs":["PMID:12426374","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"long mitotic spindle during anaphase","termid":"FYPO:0004438"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000120"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002399"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000054","FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0002399","FYPO:0000120"],"is_obsolete":false,"name":"long mitotic spindle during anaphase A","synonyms":[{"name":"elongated mitotic spindle during anaphase A","type":"exact"},{"name":"increased mitotic spindle length during anaphase A","type":"exact"},{"name":"long bipolar mitotic spindle during anaphase A","type":"exact"},{"name":"long mitotic spindle during anaphase A during vegetative growth","type":"exact"},{"name":"long mitotic spindles during anaphase A","type":"exact"},{"name":"long spindle during anaphase A of mitosis","type":"exact"},{"name":"long spindle during mitotic anaphase A","type":"exact"}],"termid":"FYPO:0006190"}


id: GO:1901675
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of histone H3-K27 acetylation.","definition_xrefs":["GOC:BHF","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of histone H3-K27 acetylation (obsolete GO:1901675)","synonyms":[{"name":"down regulation of histone H3 acetylation at K27","type":"exact"},{"name":"down regulation of histone H3-K27 acetylation","type":"exact"},{"name":"down regulation of histone H3K27 acetylation","type":"exact"},{"name":"down-regulation of histone H3 acetylation at K27","type":"exact"},{"name":"down-regulation of histone H3-K27 acetylation","type":"exact"},{"name":"down-regulation of histone H3K27 acetylation","type":"exact"},{"name":"downregulation of histone H3 acetylation at K27","type":"exact"},{"name":"downregulation of histone H3-K27 acetylation","type":"exact"},{"name":"downregulation of histone H3K27 acetylation","type":"exact"},{"name":"inhibition of histone H3 acetylation at K27","type":"exact"},{"name":"inhibition of histone H3-K27 acetylation","type":"narrow"},{"name":"inhibition of histone H3K27 acetylation","type":"exact"},{"name":"negative regulation of histone H3 acetylation at K27","type":"exact"},{"name":"negative regulation of histone H3K27 acetylation","type":"exact"}],"termid":"GO:1901675"}


id: MONDO:0003128
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A pulmonary blastoma composed of a mixture of irregular tubular structures and mesenchymal elements.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pulmonary blastoma","termid":"MONDO:0005933"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"classic pulmonary blastoma","secondary_identifiers":["MEDGEN:231445","UMLS:C1332556","DOID:4767","NCIT:C36054"],"synonyms":[{"name":"biphasic pulmonary blastoma","type":"exact"},{"name":"classic pulmonary blastoma","type":"exact"}],"termid":"MONDO:0003128","xrefs":{"Monarch":{"xref_id":"0003128"}}}


id: PBO:0049421
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gulonolactone (L-) oxidase, pseudogene","termid":"PBO:0049421"}


id: SO:0000783
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute to describe a region that was modified in vitro.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"feature_attribute","termid":"SO:0000733"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"engineered","termid":"SO:0000783"}


id: PBO:0059735
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO3 pseudogene 9","termid":"PBO:0059735"}


id: PBO:0013798
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat protein, nucleoporin Nup37","termid":"PBO:0013798"}


id: GO:0018989
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The first process of molting, characterized by the detachment of the old cuticle from the underlying epidermal cells.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molting cycle process","termid":"GO:0022404"},{"relation_name":"part_of","term_name":"molting cycle, chitin-based cuticle","termid":"GO:0007591"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"apolysis","secondary_identifiers":["Wikipedia:Apolysis"],"termid":"GO:0018989"}


id: PBO:0029275
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_RNA_level_during_cellular_response_to_hydroxyurea","termid":"PBO:0029275"}


id: PBO:0091179
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intermembrane lipid transfer protein, chorein family Vps1302","termid":"PBO:0091179"}


id: MONDO:0003113
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant germ cell tumor that develops as a primary tumor in an anatomic site other than the testis or ovary.","definition_xrefs":["NCIT:C8881"],"direct_ancestors":[{"relation_name":"is_a","term_name":"malignant germ cell tumor","termid":"MONDO:0006290"},{"relation_name":"is_a","term_name":"extragonadal germ cell tumor","termid":"MONDO:0018201"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"extragonadal germ cell cancer","secondary_identifiers":["UMLS:C1334581","MEDGEN:235292","DOID:4717"],"synonyms":[{"name":"extragonadal germ cell malignant tumor","type":"exact"},{"name":"extragonadal germ cell malignant tumour","type":"exact"},{"name":"extragonadal germ cell tumor, malignant","type":"exact"},{"name":"malignant extragonadal germ cell tumor","type":"exact"},{"name":"malignant extragonadal germ cell tumour","type":"exact"},{"name":"malignant neoplasm of extragonadal germ cell","type":"exact"},{"name":"malignant neoplasm of the extragonadal germ cell","type":"exact"},{"name":"malignant tumor of extragonadal germ cell","type":"exact"},{"name":"malignant tumor of the extragonadal germ cell","type":"exact"},{"name":"malignant tumour of extragonadal germ cell","type":"exact"},{"name":"malignant tumour of the extragonadal germ cell","type":"exact"},{"name":"tumor of extragonadal germ cell","type":"related"},{"name":"tumour of extragonadal germ cell","type":"related"}],"termid":"MONDO:0003113","xrefs":{"Monarch":{"xref_id":"0003113"}}}


id: GO:0006708
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of ecdysone, (22R)-2-beta,3-beta,14,22,25-pentahydroxycholest-7-en-6-one, an ecdysteroid found in insects.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ecdysone metabolic process","termid":"GO:0008205"},{"relation_name":"is_a","term_name":"sterol catabolic process","termid":"GO:0016127"},{"relation_name":"is_a","term_name":"alcohol catabolic process","termid":"GO:0046164"},{"relation_name":"is_a","term_name":"ecdysteroid catabolic process","termid":"GO:0046344"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006629"],"is_obsolete":false,"name":"ecdysone catabolic process","synonyms":[{"name":"ecdysone breakdown","type":"exact"},{"name":"ecdysone catabolism","type":"exact"},{"name":"ecdysone degradation","type":"exact"}],"termid":"GO:0006708"}


id: GO:0072165
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the anterior mesonephric tubule over time, from its initial formation to the mature structure. The anterior mesonephric tubule is an epithelial tube that is part of the mesonephros.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesonephric tubule development","termid":"GO:0072164"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anterior mesonephric tubule development","termid":"GO:0072165"}


id: PBO:0069201
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 455, pseudogene","termid":"PBO:0069201"}


id: PBO:0086203
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that associates with mitochondrial ribosome; sumoylated under stress conditions in a genome wide study; YDR336W is not an essential gene","termid":"PBO:0086203"}


id: MONDO:0021310
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A cancer that involves the neck.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"head and neck cancer","termid":"MONDO:0005627"},{"relation_name":"is_a","term_name":"neoplasm of neck","termid":"MONDO:0021351"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"malignant tumor of neck","secondary_identifiers":["MEDGEN:155434","UMLS:C0746787","NCIT:C4940","SCTID:363489000"],"synonyms":[{"name":"cancer of neck","type":"exact"},{"name":"cancer of the neck","type":"exact"},{"name":"malignant neck neoplasm","type":"exact"},{"name":"malignant neck tumor","type":"exact"},{"name":"malignant neck tumour","type":"exact"},{"name":"malignant neoplasm of neck","type":"exact"},{"name":"malignant neoplasm of the neck","type":"exact"},{"name":"malignant tumor of the neck","type":"exact"},{"name":"malignant tumour of the neck","type":"exact"},{"name":"neck cancer","type":"exact"}],"termid":"MONDO:0021310","xrefs":{"Monarch":{"xref_id":"0021310"}}}


id: MONDO:0030977
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"neuronopathy, distal hereditary motor, autosomal recessive","termid":"MONDO:0015363"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0006025","MONDO:0005244"],"is_obsolete":false,"name":"neuronopathy, distal hereditary motor, autosomal recessive 7","secondary_identifiers":["MEDGEN:1786836","OMIM:619216","UMLS:C5543119","DOID:0081426","GARD:18444"],"synonyms":[{"name":"HMNMYO","type":"exact"},{"name":"neuropathy, hereditary motor, with myopathic features","type":"exact"}],"termid":"MONDO:0030977","xrefs":{"Monarch":{"xref_id":"0030977"}}}


id: MONDO:0012400
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An autosomal recessive condition caused by mutation(s) in the CNTNAP2 gene, encoding contactin-associated protein-like 2. It is characterized by normal development until the onset of intractable focal seizures at age 1-9. After the onset of seizures, language regression, intellectual disability, hyperactivity, and impulsive behaviors begin to occur. The majority of children eventually fulfill the criteria for autism spectrum disorder.","definition_xrefs":["NCIT:C133743"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"epilepsy syndrome","termid":"MONDO:0015650"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"Pitt-Hopkins-like syndrome","termid":"MONDO:0016377"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cortical dysplasia-focal epilepsy syndrome","secondary_identifiers":["GARD:16997","MEDGEN:413258","MESH:C567657","DOID:0090130","Orphanet:163681","UMLS:C2750246","OMIM:610042"],"synonyms":[{"name":"CDFE syndrome","type":"exact"},{"name":"CDFES","type":"exact"},{"name":"PTHSL1","type":"related"},{"name":"Pitt-Hopkins like syndrome 1","type":"exact"},{"name":"Pitt-Hopkins-like syndrome 1","type":"related"},{"name":"cortical dysplasia-focal epilepsy syndrome","type":"exact"}],"termid":"MONDO:0012400","xrefs":{"Monarch":{"xref_id":"0012400"}}}


id: PBO:0003284
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spindle pole body protein Kms2","termid":"PBO:0003284"}


id: PR:Q06182
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- swi10 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q06182"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mating-type switching protein swi10 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC4F6.15c","synonyms":[{"name":"Spom972h-swi10","type":"exact"}],"termid":"PR:Q06182"}


id: FYPO:0003817
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of 5'-3' DNA helicase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000707","FYPO:0000661","FYPO:0000652","FYPO:0001985"],"is_obsolete":false,"name":"abnormal 5'-3' DNA helicase activity","termid":"FYPO:0003817"}


id: GO:0102700
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: geranyl diphosphate(3-) = alpha-thujene + diphosphoric acid.","definition_xrefs":["MetaCyc:RXN-5105"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on phosphates","termid":"GO:0016838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016829","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"alpha-thujene synthase activity","termid":"GO:0102700"}


id: GO:0060973
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of a cell from one site to another that will contribute to the progression of the heart over time, from its initial formation, to the mature organ.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell migration","termid":"GO:0016477"},{"relation_name":"part_of","term_name":"heart development","termid":"GO:0007507"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell migration involved in heart development","termid":"GO:0060973"}


id: MONDO:0012596
data:
  {"annotated_genes":["SJAG_02791"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86854],"is_not":false,"summary":null,"term":"MONDO:0012596"}]},"cv_name":"mondo","definition":"Phosphoserine aminotransferase deficiency is an extremely rare form of serine deficiency syndrome characterized clinically in the two reported cases to date by acquired microcephaly, psychomotor retardation, intractable seizures and hypertonia.","definition_xrefs":["Orphanet:284417"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"neurometabolic disorder due to serine deficiency","termid":"MONDO:0018162"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02791":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004736"}],"interesting_parent_ids":["MONDO:0004736","MONDO:0005066"],"is_obsolete":false,"name":"PSAT deficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:410026","OMIM:610992","SCTID:718603002","MESH:C567032","UMLS:C1970253","GARD:13273","DOID:0050723"],"synonyms":[{"name":"PSAT deficiency","type":"exact"},{"name":"PSATD","type":"related"},{"name":"phosphoserine aminotransferase deficiency","type":"exact"}],"termid":"MONDO:0012596","terms_by_termid":{"MONDO:0012596":null},"xrefs":{"Monarch":{"xref_id":"0012596"}}}


id: PBO:0000267
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine O-acetyltransferase activity (predicted)","termid":"PBO:0000267"}


id: PBO:0061046
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NIPA like domain containing 2","termid":"PBO:0061046"}


id: GO:0062192
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: alpha-L-rhamnose = beta-L-rhamnose.","definition_xrefs":["RHEA:25584"],"direct_ancestors":[{"relation_name":"is_a","term_name":"racemase and epimerase activity, acting on carbohydrates and derivatives","termid":"GO:0016857"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016853"],"is_obsolete":false,"name":"L-rhamnose mutarotase activity","secondary_identifiers":["EC:5.1.3.32"],"termid":"GO:0062192"}


id: PBO:0061277
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADP dependent oxidoreductase domain containing 1","termid":"PBO:0061277"}


id: PBO:0066857
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 157","termid":"PBO:0066857"}


id: GO:0046466
data:
  {"annotated_genes":["SJAG_00519","SJAG_01219"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90157,109189],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046521"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of membrane lipids, any lipid found in or associated with a biological membrane.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane lipid metabolic process","termid":"GO:0006643"},{"relation_name":"is_a","term_name":"lipid catabolic process","termid":"GO:0016042"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00519":null,"SJAG_01219":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"membrane lipid catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"membrane lipid breakdown","type":"exact"},{"name":"membrane lipid catabolism","type":"exact"},{"name":"membrane lipid degradation","type":"exact"},{"name":"membrane lipid peroxidation","type":"broad"}],"termid":"GO:0046466","terms_by_termid":{"GO:0046521":null}}


id: PR:G2TRN3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAPB15E9.06 gene.","definition_xrefs":["PRO:DNx","UniProtKB:G2TRN3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized transmembrane protein PB15E9.06 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAPB15E9.06","synonyms":[{"name":"Spom972h-SPAPB15E9.06","type":"exact"}],"termid":"PR:G2TRN3"}


id: MONDO:1011834
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system disorder, non-human animal","termid":"MONDO:1011336"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cerebellar abiotrophy, non-human animal","secondary_identifiers":["OMIA:000175"],"termid":"MONDO:1011834","xrefs":{"Monarch":{"xref_id":"1011834"}}}


id: GO:0016308
data:
  {"annotated_genes":["SJAG_01863"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[79825],"is_not":false,"summary":null,"term":"GO:0016308"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a 1-phosphatidyl-1D-myo-inositol 4-phosphate + ATP = a 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + ADP + H+.","definition_xrefs":["RHEA:14425","EC:2.7.1.68"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylinositol kinase activity","termid":"GO:0052742"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01863":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016740","GO:0016301"],"is_obsolete":false,"name":"1-phosphatidylinositol-4-phosphate 5-kinase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-3772436","GO:0045215","GO:0004431","MetaCyc:2.7.1.68-RXN","Reactome:R-HSA-8868066","KEGG_REACTION:R03469","Reactome:R-HSA-1676082"],"synonyms":[{"name":"1-phosphatidylinositol-4-phosphate kinase activity","type":"broad"},{"name":"1-phosphatidylinositol-4-phosphate kinase, class IA","type":"narrow"},{"name":"1-phosphatidylinositol-4-phosphate kinase, class IB","type":"narrow"},{"name":"ATP:1-phosphatidyl-1D-myo-inositol-4-phosphate 5-phosphotransferase activity","type":"related"},{"name":"PI(4)5K","type":"related"},{"name":"PIP kinase activity","type":"broad"},{"name":"PIP5K","type":"exact"},{"name":"PtdIns(4)P-5-kinase activity","type":"related"},{"name":"diphosphoinositide kinase activity","type":"broad"},{"name":"phosphatidylinositol 4-phosphate kinase activity","type":"broad"},{"name":"phosphatidylinositol-4-phosphate 5-kinase activity","type":"related"},{"name":"type I PIP kinase activity","type":"narrow"}],"termid":"GO:0016308","terms_by_termid":{"GO:0016308":null}}


id: PBO:0046997
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 89 member B","termid":"PBO:0046997"}


id: PBO:0075288
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorting nexin 29 pseudogene 1","termid":"PBO:0075288"}


id: GO:0050648
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to 5(S)-hydroxyperoxy-6E,8Z,11Z,14Z-icosatetraenoic acid, a straight-chain fatty acid with twenty carbon atoms and four double bonds.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"long-chain fatty acid binding","termid":"GO:0036041"},{"relation_name":"is_a","term_name":"icosanoid binding","termid":"GO:0050542"},{"relation_name":"is_a","term_name":"fatty acid derivative binding","termid":"GO:1901567"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0008289"}],"interesting_parent_ids":["GO:0008289","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"5(S)-hydroxyperoxy-6E,8Z,11Z,14Z-icosatetraenoic acid binding","synonyms":[{"name":"5(S)-hydroxyperoxy-6E,8Z,11Z,14Z-eicosatetraenoic acid binding","type":"exact"}],"termid":"GO:0050648"}


id: GO:0030145
data:
  {"annotated_genes":["SJAG_03398","SJAG_04407","SJAG_05010","SJAG_02247","SJAG_01254","SJAG_01896","SJAG_03744","SJAG_00181","SJAG_05373","SJAG_03303"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[57842,60283,66582,68930,70874,77509,100186,106116,106271,116052],"is_not":false,"summary":null,"term":"GO:0030145"}]},"cv_name":"molecular_function","definition":"Binding to a manganese ion (Mn).","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transition metal ion binding","termid":"GO:0046914"}],"gene_count":10,"genes_by_uniquename":{"SJAG_00181":null,"SJAG_01254":null,"SJAG_01896":null,"SJAG_02247":null,"SJAG_03303":null,"SJAG_03398":null,"SJAG_03744":null,"SJAG_04407":null,"SJAG_05010":null,"SJAG_05373":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0046872"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0046872","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"manganese ion binding","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"Mn binding","type":"exact"},{"name":"manganese binding","type":"exact"}],"termid":"GO:0030145","terms_by_termid":{"GO:0030145":null}}


id: GO:0001664
data:
  {"annotated_genes":["SJAG_02233","SJAG_02444"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[74637,80702],"is_not":false,"summary":null,"term":"GO:0001664"}]},"cv_name":"molecular_function","definition":"Binding to a G protein-coupled receptor.","definition_xrefs":["GOC:dph","GOC:ceb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor binding","termid":"GO:0005102"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02233":null,"SJAG_02444":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"G protein-coupled receptor binding","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-500717"],"synonyms":[{"name":"G protein coupled receptor binding","type":"exact"},{"name":"G protein coupled receptor ligand","type":"narrow"},{"name":"G-protein coupled receptor binding","type":"exact"},{"name":"G-protein-coupled receptor ligand","type":"narrow"}],"termid":"GO:0001664","terms_by_termid":{"GO:0001664":null}}


id: PBO:0005173
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA repair endonuclease XPF","termid":"PBO:0005173"}


id: PBO:0067693
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5.8S ribosomal N5","termid":"PBO:0067693"}


id: GO:0034250
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving amides.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of metabolic process","termid":"GO:0009893"},{"relation_name":"is_a","term_name":"regulation of amide metabolic process","termid":"GO:0034248"},{"relation_name":"positively_regulates","term_name":"amide metabolic process","termid":"GO:0043603"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of amide metabolic process","synonyms":[{"name":"positive regulation of amide metabolism","type":"exact"},{"name":"positive regulation of cellular amide metabolic process","type":"exact"}],"termid":"GO:0034250"}


id: MOD:00793
data:
  {"annotated_genes":["SJAG_00827"],"annotation_feature_type":"gene","cv_annotations":{"PSI-MOD":[{"annotations":[80910],"is_not":false,"summary":null,"term":"MOD:00793"}]},"cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to dehydroalanine.","definition_xrefs":["ChEBI:17123","PubMed:2914619","PubMed:8239649","PubMed:10220322","PubMed:1547888","PubMed:11212008","RESID:AA0181#CYS","PubMed:15799070","PubMed:20805503","Unimod:368","PubMed:7947813","DeltaMass:8","PubMed:1815586"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"},{"relation_name":"is_a","term_name":"dehydroalanine","termid":"MOD:01168"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00827":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"dehydroalanine (Cys)","references_by_uniquename":{"PMID:36408920":null},"synonyms":[{"name":"2,3-didehydroalanine","type":"exact"},{"name":"2-aminoacrylic acid","type":"exact"},{"name":"2-aminopropenoic acid","type":"exact"},{"name":"4-methylidene-imidazole-5-one (MIO) active site","type":"exact"},{"name":"Cys->Dha","type":"related"},{"name":"Dehydroalanine (from Cysteine)","type":"exact"},{"name":"Dha","type":"exact"},{"name":"MOD_RES 2,3-didehydroalanine (Cys)","type":"exact"},{"name":"anhydroserine","type":"exact"},{"name":"dHAla(Cys)","type":"exact"},{"name":"dehydroalanine","type":"exact"}],"termid":"MOD:00793","terms_by_termid":{"MOD:00793":null}}


id: PBO:0065680
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidyl-tRNA hydrolase 2","termid":"PBO:0065680"}


id: GO:0140889
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The disruption of nucleosomes during DNA replication to allow the replication machinery to access the DNA.","definition_xrefs":["PMID:34471130","PMID:35308047"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromatin organization","termid":"GO:0006325"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006325"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006325","GO:0008150"],"is_obsolete":false,"name":"DNA replication-dependent chromatin disassembly","termid":"GO:0140889"}


id: PR:Q09751
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A lactoylglutathione lyase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR10374:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lactoylglutathione lyase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC12C2.12c","secondary_identifiers":["UniProtKB:Q09751"],"synonyms":[{"name":"Aldoketomutase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Glx I (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Methylglyoxalase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"S-D-lactoylglutathione methylglyoxal lyase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SPBC12C2.12c","type":"related"},{"name":"Spom972h-GLO1","type":"exact"},{"name":"glyoxalase I (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ketone-aldehyde mutase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q09751"}


id: PBO:0078964
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ser (anticodon AGA) 3-1","termid":"PBO:0078964"}


id: PBO:0012278
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EST1 family nonsense-mediated mRNA decay (NMD) pathway protein Ebs1 (predicted)","termid":"PBO:0012278"}


id: PBO:0088877
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"copper-binding protein of the mitochondrial inner membrane Cmc2","termid":"PBO:0088877"}


id: PBO:0063719
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyroglutamyl-peptidase I","termid":"PBO:0063719"}


id: PBO:0065724
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Prader-Willi region non-protein coding RNA 1","termid":"PBO:0065724"}


id: PBO:0055814
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lipin 2","termid":"PBO:0055814"}


id: MOD:00251
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-serine residue and the 5'-end of DNA through a phosphodiester bond to form O-(phospho-5'-DNA)-L-serine.","definition_xrefs":["PubMed:7142163","RESID:AA0246","PubMed:7265205"],"direct_ancestors":[{"relation_name":"is_a","term_name":"deoxyribonucleic acid linked residue","termid":"MOD:00750"},{"relation_name":"is_a","term_name":"modified L-serine residue","termid":"MOD:00916"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"O-(phospho-5'-DNA)-L-serine","synonyms":[{"name":"(S)-2-amino-3-(5'-deoxyribonucleic acid phosphonoxy)propanoic acid","type":"exact"},{"name":"ACT_SITE O-(5'-phospho-DNA)-serine intermediate","type":"exact"},{"name":"MOD_RES O-(5'-phospho-DNA)-serine","type":"exact"},{"name":"O-(phospho-5'-DNA)-L-serine","type":"exact"},{"name":"O3-(phospho-5'-DNA)-L-serine","type":"exact"},{"name":"O3-L-serine 5'-DNA phosphodiester","type":"exact"}],"termid":"MOD:00251"}


id: MONDO:0010081
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"aortic disorder","termid":"MONDO:0005561"},{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"subaortic stenosis, membranous","secondary_identifiers":["UMLS:C1848979","GARD:18242","MEDGEN:336468","OMIM:271950","MESH:C564793"],"synonyms":[{"name":"subaortic stenosis, membranous","type":"exact"}],"termid":"MONDO:0010081","xrefs":{"Monarch":{"xref_id":"0010081"}}}


id: PBO:0075129
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nuclear ribonucleoprotein U4/U6.U5 subunit 27","termid":"PBO:0075129"}


id: GO:0099400
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A membrane microdomain that forms a necklace around the bulb (crater) of a caveola. Intramembrane particles are concentrated in this region and cytoskeletal components, including actin, are highly enriched in the area underlying it.","definition_xrefs":["GOC:pad","GOC:PARL","PMID:17227843"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane region","termid":"GO:0098590"},{"relation_name":"is_a","term_name":"membrane microdomain","termid":"GO:0098857"},{"relation_name":"part_of","term_name":"caveola","termid":"GO:0005901"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005886"}],"interesting_parent_ids":["GO:0005575","GO:0005886"],"is_obsolete":false,"name":"caveola neck","termid":"GO:0099400"}


id: GO:0042947
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of glucosides from one side of a membrane to the other. Glucosides are glycosides in which the sugar group is a glucose residue.","definition_xrefs":["GOC:jl","GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate derivative transmembrane transporter activity","termid":"GO:1901505"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"glucoside transmembrane transporter activity","termid":"GO:0042947"}


id: PBO:0060510
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NSF attachment protein beta","termid":"PBO:0060510"}


id: GO:0032049
data:
  {"annotated_genes":["SJAG_03563","SJAG_00168","SJAG_04317","SJAG_03700"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71672,80406,93370,118243],"is_not":false,"summary":null,"term":"GO:0032049"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of cardiolipin, 1,3-bis(3-phosphatidyl)glycerol.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatidylglycerol biosynthetic process","termid":"GO:0006655"},{"relation_name":"is_a","term_name":"cardiolipin metabolic process","termid":"GO:0032048"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00168":null,"SJAG_03563":null,"SJAG_03700":null,"SJAG_04317":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"cardiolipin biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:PWY-5269","Reactome:R-HSA-1483076"],"synonyms":[{"name":"diphosphatidylglycerol biosynthesis","type":"related"},{"name":"diphosphatidylglycerol biosynthetic process","type":"related"}],"termid":"GO:0032049","terms_by_termid":{"GO:0032049":null}}


id: PBO:0041091
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BR serine/threonine kinase 2","termid":"PBO:0041091"}


id: MONDO:0009406
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Cantu syndrome is a rare disorder characterized by congenital hypertrichosis, osteochondrodysplasia, cardiomegaly, and dysmorphism.","definition_xrefs":["Orphanet:1517"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"osteochondrodysplasia","termid":"MONDO:0005516"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-variable intellectual disability syndrome","termid":"MONDO:0015160"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"hypertrichotic osteochondrodysplasia Cantu type","secondary_identifiers":["MEDGEN:208647","MESH:C535572","SCTID:239087008","DOID:0060569","UMLS:C0795905","GARD:8585","OMIM:239850"],"synonyms":[{"name":"Cantu syndrome","type":"exact"},{"name":"Craniofaciocardioskeletal syndrome","type":"related"},{"name":"hypertrichotic osteochondrodysplasia","type":"related"},{"name":"hypertrichotic osteochondrodysplasia (Cantu syndrome)","type":"exact"},{"name":"hypertrichotic osteochondrodysplasia, Cantu type","type":"related"}],"termid":"MONDO:0009406","xrefs":{"Monarch":{"xref_id":"0009406"}}}


id: PBO:0066198
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein 15B","termid":"PBO:0066198"}


id: FYPO:0008267
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the total amount of phosphate (Pi) in the cell is normal (i.e. indistinguishable from wild type).","direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular phosphate (Pi) level","termid":"FYPO:0008266"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0001312","FYPO:0001320"],"is_obsolete":false,"name":"normal total cellular phosphate (Pi) level","secondary_identifiers":["PMID:37949217"],"termid":"FYPO:0008267"}


id: PBO:0087369
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPOUT methyltransferase; catalyzes omega-monomethylation of Rps3p on Arg-146; not an essential gene; predicted to be involved in rRNA processing and ribosome biogenesis and in biopolymer catabolism","termid":"PBO:0087369"}


id: PBO:0064797
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase methylesterase 1","termid":"PBO:0064797"}


id: MONDO:0002756
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A solitary plasmacytoma that arises from the chest wall.","definition_xrefs":["NCIT:C6711"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune system cancer","termid":"MONDO:0000621"},{"relation_name":"is_a","term_name":"chest wall lymphoma","termid":"MONDO:0003985"},{"relation_name":"is_a","term_name":"plasmacytoma","termid":"MONDO:0005615"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046","MONDO:0004992"],"is_obsolete":false,"name":"solitary plasmacytoma of chest wall","secondary_identifiers":["MEDGEN:232340","UMLS:C1332936","DOID:3723"],"synonyms":[{"name":"chest wall plasmacytoma","type":"exact"},{"name":"chest wall solitary plasmacytoma","type":"exact"},{"name":"plasmacytoma of chest wall","type":"exact"},{"name":"solitary plasmacytoma of chest wall","type":"exact"},{"name":"solitary plasmacytoma of the chest wall","type":"exact"}],"termid":"MONDO:0002756","xrefs":{"Monarch":{"xref_id":"0002756"}}}


id: MONDO:1010775
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pemphigus that occurs in cattle.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pemphigus, non-human animal","termid":"MONDO:1010138"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pemphigus, cattle","secondary_identifiers":["OMIA:001188-9913"],"termid":"MONDO:1010775","xrefs":{"Monarch":{"xref_id":"1010775"}}}


id: PBO:0052270
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysine demethylase 4D","termid":"PBO:0052270"}


id: PBO:0000482
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"poly(A) binding protein Nab3 (predicted)","termid":"PBO:0000482"}


id: PBO:0066247
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif single stranded interacting protein 3","termid":"PBO:0066247"}


id: PBO:0047844
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FPGT-TNNI3K readthrough","termid":"PBO:0047844"}


id: GO:0000808
data:
  {"annotated_genes":["SJAG_03927","SJAG_03451","SJAG_05301","SJAG_02800","SJAG_02394","SJAG_01267"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[79805,61461,75319,70384,79134,74145],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005664"}]},"cv_name":"cellular_component","definition":"A multisubunit complex that is located at the replication origins of a chromosome.","definition_xrefs":["GOC:elh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"chromosome","termid":"GO:0005694"}],"gene_count":6,"genes_by_uniquename":{"SJAG_01267":null,"SJAG_02394":null,"SJAG_02800":null,"SJAG_03451":null,"SJAG_03927":null,"SJAG_05301":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005694","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"origin recognition complex","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null},"secondary_identifiers":["Wikipedia:Origin_recognition_complex"],"synonyms":[{"name":"ORC","type":"exact"},{"name":"origin of replication recognition complex","type":"exact"}],"termid":"GO:0000808","terms_by_termid":{"GO:0005664":null}}


id: GO:0051568
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H3 by addition of one or more methyl groups to lysine at position 4 of the histone.","definition_xrefs":["GOC:ai","GOC:pr"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H3-K4 methylation (obsolete GO:0051568)","synonyms":[{"name":"histone H3 K4 methylation","type":"exact"},{"name":"histone H3K4me","type":"exact"},{"name":"histone lysine H3 K4 methylation","type":"exact"}],"termid":"GO:0051568"}


id: FYPO:0007816
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of polyphosphate measured in a cell (total or free) is higher than normal.","definition_xrefs":["PMID:34147496","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of substance in cell during vegetative growth","termid":"FYPO:0001330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"increased cellular polyphosphate level","synonyms":[{"name":"increased cellular polyphosphate level during mitotic cell cycle","type":"related"},{"name":"increased cellular polyphosphate level during vegetative growth","type":"exact"},{"name":"increased polyphosphate accumulation","type":"related"}],"termid":"FYPO:0007816"}


id: PBO:0016566
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pombe Unidentified Cyclin","termid":"PBO:0016566"}


id: MONDO:0008536
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"temperature-sensitive lethal mutation","secondary_identifiers":["OMIM:187340","UMLS:C1861242","MEDGEN:396088"],"synonyms":[{"name":"temperature-sensitive lethal mutation","type":"exact"}],"termid":"MONDO:0008536","xrefs":{"Monarch":{"xref_id":"0008536"}}}


id: FYPO:0006321
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at stalled replication forks is decreased.","definition_xrefs":["PMID:29215009","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to chromatin during vegetative growth","termid":"FYPO:0000452"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"decreased protein localization to chromatin at stalled replication fork","synonyms":[{"name":"decreased protein localisation to chromatin at stalled replication fork during vegetative growth","type":"exact"},{"name":"decreased protein localization to chromatin at stalled replication fork during mitotic cell cycle","type":"related"},{"name":"reduced protein localization to chromatin at stalled replication fork during vegetative growth","type":"exact"}],"termid":"FYPO:0006321"}


id: PBO:0048103
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FtsJ RNA 2'-O-methyltransferase 1","termid":"PBO:0048103"}


id: GO:0019573
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of D-arabinose to form D-xylulose 5-phosphate. D-arabinose is converted into D-ribulose, which is phosphorylated to D-ribulose-5-phosphate, which is isomerized to give D-xylulose-5-phosphate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"D-arabinose catabolic process","termid":"GO:0019571"},{"relation_name":"is_a","term_name":"D-xylulose 5-phosphate metabolic process","termid":"GO:0051167"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0005975"],"is_obsolete":false,"name":"D-arabinose catabolic process to D-xylulose 5-phosphate","secondary_identifiers":["MetaCyc:DARABCAT-PWY"],"synonyms":[{"name":"D-arabinose breakdown to xylulose 5-phosphate","type":"exact"},{"name":"D-arabinose degradation to xylulose 5-phosphate","type":"exact"}],"termid":"GO:0019573"}


id: MONDO:0013487
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"complement deficiency","termid":"MONDO:0003832"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"recurrent Neisseria infections due to factor D deficiency","secondary_identifiers":["MESH:C565027","UMLS:C0398764","Orphanet:169467","ICD9:279.8","MEDGEN:97989","NANDO:2200788","OMIM:613912","SCTID:234607008","GARD:17055","icd11.foundation:528757185"],"synonyms":[{"name":"CFDD","type":"related"},{"name":"complement factor D deficiency","type":"related"},{"name":"factor D deficiency","type":"related"},{"name":"recurrent Neisseria infections due to factor D deficiency","type":"exact"}],"termid":"MONDO:0013487","xrefs":{"Monarch":{"xref_id":"0013487"}}}


id: GO:0042650
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The membrane of prothylakoids, underdeveloped thylakoids found in etioplasts, lacking competent photosynthetic membranes.","definition_xrefs":["GOC:jl","PMID:11532175"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plastid thylakoid membrane","termid":"GO:0055035"},{"relation_name":"part_of","term_name":"prothylakoid","termid":"GO:0042649"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"prothylakoid membrane","termid":"GO:0042650"}


id: MONDO:0004221
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplasm with perivascular epithelioid cell differentiation arising from the uterine corpus wall.","definition_xrefs":["NCIT:C40180"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"uterine corpus cancer","termid":"MONDO:0006003"},{"relation_name":"is_a","term_name":"mixed endometrial stromal and smooth muscle tumor","termid":"MONDO:0004526"},{"relation_name":"is_a","term_name":"neoplasm with perivascular epithelioid cell differentiation","termid":"MONDO:0006359"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uterine corpus perivascular epithelioid cell tumor","secondary_identifiers":["ONCOTREE:UPECOMA","DOID:7437","MEDGEN:276940","UMLS:C1519862"],"synonyms":[{"name":"body of uterus neoplasm with perivascular epithelioid cell differentiation","type":"exact"},{"name":"uterine corpus PEComa","type":"exact"},{"name":"uterine corpus perivascular epithelioid cell tumor","type":"exact"},{"name":"uterine perivascular epithelioid cell tumor","type":"related"},{"name":"uterine perivascular epithelioid cell tumour","type":"related"},{"name":"uterus perivascular epithelioid cell tumor","type":"related"},{"name":"uterus perivascular epithelioid cell tumour","type":"related"}],"termid":"MONDO:0004221","xrefs":{"Monarch":{"xref_id":"0004221"}}}


