# terms

id: FYPO:0009024
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population phenotype in which cell growth is increased relative to normal in a medium containing cysteine as the nitrogen source.","definition_xrefs":["PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased vegetative cell population growth","termid":"FYPO:0004557"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002058"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0001985","FYPO:0000139","FYPO:0002058","FYPO:0005447","FYPO:0002057"],"is_obsolete":false,"name":"increased cell population growth on cysteine nitrogen source","synonyms":[{"name":"increased growth on cysteine nitrogen source","type":"broad"},{"name":"increased vegetative cell growth on cysteine nitrogen source","type":"exact"}],"termid":"FYPO:0009024"}


id: MOD:00386
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-lysine residue and a glycine residue to form L-lysine 5-imidazolinone glycine.","definition_xrefs":["PubMed:10504696","RESID:AA0381"],"direct_ancestors":[{"relation_name":"is_a","term_name":"5-imidazolinone ring crosslinked residues (Gly)","termid":"MOD:01882"},{"relation_name":"is_a","term_name":"crosslinked glycine residue","termid":"MOD:02047"},{"relation_name":"is_a","term_name":"crosslinked L-lysine residue","termid":"MOD:02051"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-lysine 5-imidazolinone glycine","synonyms":[{"name":"(2-[(1S)-1,5-diaminopentyl]-5-oxo-4,5-dihydro-1H-imidazol-1-yl)acetic acid","type":"exact"},{"name":"2-[(S)-1,5-diaminopentanyl]-1-carboxymethyl-1-imidazolin-5-one","type":"exact"},{"name":"Anemonia majano fluorescent protein FP486 chromophore","type":"exact"},{"name":"CROSSLNK 5-imidazolinone (Lys-Gly)","type":"exact"},{"name":"L-lysine 5-imidazolinone glycine","type":"exact"},{"name":"[2-(1,5-diaminopentanyl)-5-oxo-4,5-dihydro-imidazol-1-yl]-acetic acid","type":"exact"},{"name":"lysyl-5-imidazolinone glycine","type":"exact"},{"name":"para-hydroxybenzylidene-imidazolidinone chromophore","type":"exact"}],"termid":"MOD:00386"}


id: PBO:0013769
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human EXOC1","termid":"PBO:0013769"}


id: PBO:0028342
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_post-anaphase_array_morphology","termid":"PBO:0028342"}


id: PBO:0040629
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BTG3 associated nuclear protein","termid":"PBO:0040629"}


id: PBO:0036329
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exopolyphosphatase, prune (predicted)","termid":"PBO:0036329"}


id: GO:0061885
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the frequency, rate or extent of mini excitatory postsynaptic potential. Mini excitatory postsynaptic potential is a process that leads to a temporary increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell, induced by the spontaneous release of a single vesicle of an excitatory neurotransmitter into the synapse.","definition_xrefs":["GOC:bc","PMID:20395454","GOC:aruk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mini excitatory postsynaptic potential","termid":"GO:0061884"},{"relation_name":"is_a","term_name":"positive regulation of excitatory postsynaptic potential","termid":"GO:2000463"},{"relation_name":"positively_regulates","term_name":"mini excitatory postsynaptic potential","termid":"GO:0098816"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of mini excitatory postsynaptic potential","termid":"GO:0061885"}


id: GO:0048036
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the central complex over time, from its formation to the mature structure. The central complex region of the insect brain is thought to be crucial for control of locomotive behavior. Located in the middle of the two protocerebral hemispheres, it comprises four neuropilar regions, the fan-shaped body, the ellipsoid body, the protocerebral bridge and the paired noduli.","definition_xrefs":["PMID:12490252"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"brain development","termid":"GO:0007420"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"central complex development","synonyms":[{"name":"central body development","type":"exact"}],"termid":"GO:0048036"}


id: GO:0099186
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"The action of a molecule that contributes to the structural integrity of a postsynapse.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"structural constituent of synapse","termid":"GO:0098918"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005198"}],"interesting_parent_ids":["GO:0005198","GO:0003674"],"is_obsolete":false,"name":"structural constituent of postsynapse","termid":"GO:0099186"}


id: MONDO:0024330
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Inflammation of the anatomical structures of the middle ear secondary to an infectious process. Bacterial etiology is most common, but both viral and fungal pathogens are also possible. Symptoms include erythema and edema of the tympanic membrane, pain, and possibly fever. In severe infections, inflammation and edema of the structures of the middle ear can lead to perforation of the tympanic membrane secondary to the buildup of pressure in the narrow space.","definition_xrefs":["NCIT:C84354"],"direct_ancestors":[{"relation_name":"is_a","term_name":"otitis media","termid":"MONDO:0005441"},{"relation_name":"is_a","term_name":"ear infection","termid":"MONDO:0021666"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"infectious otitis media","secondary_identifiers":["MEDGEN:443472","UMLS:C2827407"],"synonyms":[{"name":"AOM","type":"exact"},{"name":"acute otitis Media","type":"exact"},{"name":"infectious otitis Media","type":"exact"},{"name":"middle Ear infection","type":"exact"},{"name":"otitis media","type":"broad"}],"termid":"MONDO:0024330","xrefs":{"Monarch":{"xref_id":"0024330"}}}


id: GO:0044159
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A membranous cellular structure within the host cell that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the host plasma membrane. In eukaryotic host cells they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation.","definition_xrefs":["GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host intracellular organelle","termid":"GO:0033647"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host thylakoid","termid":"GO:0044159"}


id: FYPO:0007104
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which homologous chromosome segregation is abnormal along the chromosome arms.","definition_xrefs":["PMID:22292001","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal homologous chromosome segregation","termid":"FYPO:0004159"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000631","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abnormal homologous chromosome arm segregation","synonyms":[{"name":"abnormal homologous chromosome arm segregation during first meiotic nuclear division","type":"exact"},{"name":"abnormal homologous chromosome arm segregation during meiosis I","type":"exact"},{"name":"abnormal homologous chromosome arm separation","type":"related"}],"termid":"FYPO:0007104"}


id: FYPO:0003287
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which progression through the meiotic cell cycle is arrested during the first meiotic interphase, before premeiotic DNA replication has taken place.","definition_xrefs":["PomBase:mah","GO:0051328"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormally arrested meiotic cell cycle","termid":"FYPO:0002224"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000631","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abnormal cell cycle arrest in meiotic interphase before premeiotic DNA replication","synonyms":[{"name":"abnormal cell cycle arrest in meiotic interphase preceding premeiotic DNA replication","type":"exact"},{"name":"abnormal meiotic cell cycle arrest in interphase before premeiotic DNA replication","type":"exact"}],"termid":"FYPO:0003287"}


id: MONDO:0008814
data:
  {"annotated_genes":["SJAG_03398"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86041],"is_not":false,"summary":null,"term":"MONDO:0008814"}]},"cv_name":"mondo","definition":"Arginase deficiency is a rare autosomal recessive amino acid metabolism disorder characterized clinically by variable degrees of hyperammonemia, developing from about 3 years of age, and leading to progressive loss of developmental milestones and spasticity in the absence of treatment.","definition_xrefs":["Orphanet:90"],"direct_ancestors":[{"relation_name":"is_a","term_name":"urea cycle disorder or inherited hyperammonemia","termid":"MONDO:0800153"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03398":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004736"}],"interesting_parent_ids":["MONDO:0004736","MONDO:0005066"],"is_obsolete":false,"name":"hyperargininemia","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:207800","MEDGEN:78688","NANDO:2200482","DOID:9278","MedDRA:10062695","icd11.foundation:1619102598","NANDO:1200807","NCIT:C84568","SCTID:23501004","MESH:D020162","UMLS:C0268548","GARD:5840"],"synonyms":[{"name":"Arg1 deficiency","type":"related"},{"name":"arginase deficiency","type":"exact"},{"name":"argininemia","type":"exact"},{"name":"deficiency of canavanase","type":"exact"},{"name":"hyperargininemia","type":"exact"}],"termid":"MONDO:0008814","terms_by_termid":{"MONDO:0008814":null},"xrefs":{"Monarch":{"xref_id":"0008814"}}}


id: PR:Q10290
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mal2 gene.","definition_xrefs":["UniProtKB:Q10290","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome segregation protein mal2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC25B8.14","synonyms":[{"name":"Spom972h-mal2","type":"exact"},{"name":"sim4 complex subunit mal2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q10290"}


id: PATO:0001451
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An extended swelling in plant organs caused primarily by an excessive accumulation of water.","definition_xrefs":["thefreedictionary.com:thefreedictionary.com"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001451 edematous (sensu botany) (obsolete PATO:0001451)","synonyms":[{"name":"edemic","type":"exact"},{"name":"oedematous","type":"exact"},{"name":"oedemic","type":"exact"}],"termid":"PATO:0001451"}


id: _global:immediately_precedes
data:
  {"annotation_feature_type":"gene","cv_name":"external","direct_ancestors":[{"relation_name":"is_a","term_name":"precedes","termid":"_global:precedes"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immediately_precedes","secondary_identifiers":["RO:0002090"],"termid":"_global:immediately_precedes"}


id: PBO:0078988
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA suppressor (TTA) 1-1","termid":"PBO:0078988"}


id: GO:0097131
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex consisting of cyclin D1 and cyclin-dependent kinase 6 (CDK6). Cyclins are characterized by periodicity in protein abundance throughout the cell cycle. Cyclin-dependent kinases represent a family of serine/threonine protein kinases that become active upon binding to a cyclin regulatory partner.","definition_xrefs":["PMID:15935619","GOC:so"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclin-dependent protein kinase holoenzyme complex","termid":"GO:0000307"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"cyclin D1-CDK6 complex","termid":"GO:0097131"}


id: PR:Q9Y7Z6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC1539.02 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9Y7Z6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic chromosome segregation protein C1539.02 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1539.02","synonyms":[{"name":"Spom972h-SPBC1539.02","type":"exact"}],"termid":"PR:Q9Y7Z6"}


id: PBO:0028207
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_punctate_nuclear_protein_localization_during_cellular_response_to_ionizing_radiation","termid":"PBO:0028207"}


id: GO:0019533
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of cellobiose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Cellobiose, or 4-O-beta-D-glucopyranosyl-D-glucose, is a disaccharide that represents the basic repeating unit of cellulose.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disaccharide transport","termid":"GO:0015766"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"cellobiose transport","termid":"GO:0019533"}


id: MONDO:0015960
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare genetic developmental defect during embryogenesis (obsolete MONDO:0015960)","secondary_identifiers":["Orphanet:183530"],"termid":"MONDO:0015960","xrefs":{"Monarch":{"xref_id":"0015960"}}}


id: PBO:0058380
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4752","termid":"PBO:0058380"}


id: RO:0002424
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"differs_in","termid":"RO:0002424"}


id: GO:1904592
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein refolding.","definition_xrefs":["PMID:11360998","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein refolding","termid":"GO:0061083"},{"relation_name":"is_a","term_name":"positive regulation of protein folding","termid":"GO:1903334"},{"relation_name":"positively_regulates","term_name":"protein refolding","termid":"GO:0042026"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006457"},{"rel_name":"positively_regulates","termid":"GO:0006457"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006457","GO:0008150"],"is_obsolete":false,"name":"positive regulation of protein refolding","synonyms":[{"name":"activation of heat shock protein activity","type":"related"},{"name":"activation of protein refolding","type":"narrow"},{"name":"positive regulation of heat shock protein activity","type":"related"},{"name":"up regulation of heat shock protein activity","type":"related"},{"name":"up regulation of protein refolding","type":"exact"},{"name":"up-regulation of heat shock protein activity","type":"related"},{"name":"up-regulation of protein refolding","type":"exact"},{"name":"upregulation of heat shock protein activity","type":"related"},{"name":"upregulation of protein refolding","type":"exact"}],"termid":"GO:1904592"}


id: PATO:0001602
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A size quality inhering in a bearer by virtue of the bearer's being abnormally expanded or increased in size.","definition_xrefs":["WordNet:WordNet"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased size","termid":"PATO:0000586"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"distended","synonyms":[{"name":"expanded ","type":"related"}],"termid":"PATO:0001602"}


id: PBO:0085202
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Outer kinetochore protein required for chromosome stability; involved in new kinetochore assembly and sister chromatid cohesion; forms a stable complex with Iml3p; peripheral component of the Ctf19 kinetochore complex that interacts with Ctf19p, Ctf3p, and Mif2p; required for the spindle assembly checkpoint; orthologous to human centromere constitutive-associated network (CCAN) subunit CENP-N and fission yeast mis15","termid":"PBO:0085202"}


id: MONDO:0000908
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any arrhythmogenic right ventricular cardiomyopathy in which the cause of the disease is a mutation in the CTNNA3 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial isolated arrhythmogenic right ventricular dysplasia","termid":"MONDO:0016342"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"arrhythmogenic right ventricular dysplasia 13","secondary_identifiers":["OMIM:615616","MEDGEN:816468","DOID:0110084","UMLS:C3810138"],"synonyms":[{"name":"ARVC13","type":"exact"},{"name":"ARVD13","type":"exact"},{"name":"CTNNA3 arrhythmogenic right ventricular cardiomyopathy","type":"exact"},{"name":"arrhythmogenic right ventricular cardiomyopathy 13","type":"exact"},{"name":"arrhythmogenic right ventricular cardiomyopathy caused by mutation in CTNNA3","type":"exact"},{"name":"arrhythmogenic right ventricular dysplasia type 13","type":"exact"},{"name":"arrhythmogenic right ventricular dysplasia, familial, 13","type":"exact"},{"name":"arrhythmogenic right ventricular dysplasia, familial, type 13","type":"exact"},{"name":"familial arrhythmogenic right ventricular dysplasia 13","type":"exact"}],"termid":"MONDO:0000908","xrefs":{"Monarch":{"xref_id":"0000908"}}}


id: PBO:0079400
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TUBB4B pseudogene 7","termid":"PBO:0079400"}


id: MOD:00859
data:
  {"annotated_genes":["SJAG_03632","SJAG_02980","SJAG_03524","SJAG_00827","SJAG_02902"],"annotation_feature_type":"gene","cv_annotations":{"PSI-MOD":[{"annotations":[80910],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MOD:00793"},{"annotations":[80822,80934,81095,80791],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MOD:01154"}]},"cv_name":"PSI-MOD","definition":"A protein modification that can be derived from different natural residues by different chemical processes.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification categorized by amino acid modified","termid":"MOD:01157"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00827":null,"SJAG_02902":null,"SJAG_02980":null,"SJAG_03524":null,"SJAG_03632":null},"genotype_count":0,"is_obsolete":false,"name":"modified residue that can arise from different natural residues","references_by_uniquename":{"PMID:36408920":null},"termid":"MOD:00859","terms_by_termid":{"MOD:00793":null,"MOD:01154":null}}


id: GO:0047845
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: deoxylimonoate + H2O = deoxylimononate D-ring-lactone + H+.","definition_xrefs":["EC:3.1.1.46","RHEA:14997"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic ester hydrolase activity","termid":"GO:0052689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0003824","GO:0016788","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"deoxylimonate A-ring-lactonase activity","secondary_identifiers":["MetaCyc:DEOXYLIMONATE-A-RING-LACTONASE-RXN","KEGG_REACTION:R03803"],"synonyms":[{"name":"deoxylimonate A-ring-lactonohydrolase activity","type":"related"}],"termid":"GO:0047845"}


id: PBO:0078018
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha joining 8","termid":"PBO:0078018"}


id: GO:1902966
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein localization to early endosome.","definition_xrefs":["PMID:22621900","GO_REF:0000058","GOC:sjp","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein localization to early endosome","termid":"GO:1902965"},{"relation_name":"is_a","term_name":"positive regulation of protein localization to endosome","termid":"GO:1905668"},{"relation_name":"positively_regulates","term_name":"protein localization to early endosome","termid":"GO:1902946"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of protein localization to early endosome","synonyms":[{"name":"activation of protein localisation in early endosome","type":"narrow"},{"name":"activation of protein localisation to early endosome","type":"narrow"},{"name":"activation of protein localization in early endosome","type":"narrow"},{"name":"activation of protein localization to early endosome","type":"narrow"},{"name":"positive regulation of protein localisation in early endosome","type":"exact"},{"name":"positive regulation of protein localisation to early endosome","type":"exact"},{"name":"positive regulation of protein localization in early endosome","type":"exact"},{"name":"up regulation of protein localisation in early endosome","type":"exact"},{"name":"up regulation of protein localisation to early endosome","type":"exact"},{"name":"up regulation of protein localization in early endosome","type":"exact"},{"name":"up regulation of protein localization to early endosome","type":"exact"},{"name":"up-regulation of protein localisation in early endosome","type":"exact"},{"name":"up-regulation of protein localisation to early endosome","type":"exact"},{"name":"up-regulation of protein localization in early endosome","type":"exact"},{"name":"up-regulation of protein localization to early endosome","type":"exact"},{"name":"upregulation of protein localisation in early endosome","type":"exact"},{"name":"upregulation of protein localisation to early endosome","type":"exact"},{"name":"upregulation of protein localization in early endosome","type":"exact"},{"name":"upregulation of protein localization to early endosome","type":"exact"}],"termid":"GO:1902966"}


id: GO:0002293
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an antigenically naive alpha-beta T cell acquires the specialized features of an effector, regulatory, or memory T cell during an immune response. Effector T cells include cells which provide T cell help or exhibit cytotoxicity towards other cells.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-beta T cell activation involved in immune response","termid":"GO:0002287"},{"relation_name":"is_a","term_name":"T cell differentiation involved in immune response","termid":"GO:0002292"},{"relation_name":"is_a","term_name":"alpha-beta T cell differentiation","termid":"GO:0046632"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"alpha-beta T cell differentiation involved in immune response","synonyms":[{"name":"alpha-beta T cell development involved in immune response","type":"related"},{"name":"alpha-beta T cell differentiation during immune response","type":"related"},{"name":"alpha-beta T lymphocyte differentiation during immune response","type":"related"},{"name":"alpha-beta T-cell differentiation during immune response","type":"related"},{"name":"alpha-beta T-lymphocyte differentiation during immune response","type":"related"}],"termid":"GO:0002293"}


id: PBO:0063316
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphorylated CTD interacting factor 1","termid":"PBO:0063316"}


id: GO:0061831
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Testis-specific junction between mature spermatids and Sertoli cells at the luminal end of the Sertoli cell.","definition_xrefs":["GOC:bc","GOC:dph","PMID:22332112","GOC:aruk","PMID:23546604"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell junction","termid":"GO:0005911"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"apical ectoplasmic specialization","synonyms":[{"name":"apical ES","type":"exact"}],"termid":"GO:0061831"}


id: PBO:0017697
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycosylceramide biosynthesis protein Cwh43 (predicted)","termid":"PBO:0017697"}


id: PBO:0036489
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TRyPtophan requiring","termid":"PBO:0036489"}


id: MONDO:0006618
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"This very rare form of angioedema develops in reply to contact with vibration. In vibratory angioedema, symptoms develop within two to five minutes after contact with vibration and dissolve after about an hour. Patients with this disorder do not suffer from dermographism or pressure urticaria. Vibratory angioedema is diagnosed by holding a vibrating device such as a laboratory vortex machine against the forearm for four minutes. Speedy swelling of the whole forearm extending into the upper arm is also noted later. The principal treatment is avoidance of vibratory stimulants. Antihistamines have also been proven helpful.","definition_xrefs":["EFO:1000775"],"direct_ancestors":[{"relation_name":"is_a","term_name":"physical urticaria","termid":"MONDO:0006599"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"vibratory urticaria","secondary_identifiers":["UMLS:C0157743","Wikipedia:Urticaria#Vibratory_angioedema","MEDGEN:510413","DOID:1554","ICD10CM:L50.4","ICD9:708.4","SCTID:51247001"],"termid":"MONDO:0006618","xrefs":{"Monarch":{"xref_id":"0006618"}}}


id: GO:0034303
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which differentiated, resting cells are formed, usually within a fruiting body by Myxobacteria. The myxospore is more resistant to high temperature, desiccation, and UV than vegetative myxobacteria.","definition_xrefs":["GOC:ds","ISBN:0122268008"],"direct_ancestors":[{"relation_name":"is_a","term_name":"asexual sporulation resulting in formation of a cellular spore","termid":"GO:0043936"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"myxospore formation","termid":"GO:0034303"}


id: GO:0005018
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with platelet-derived growth factor isoform PDGF-AA, PDGF-BB or PDGF-AB to initiate a change in cell activity.","definition_xrefs":["PMID:1657917"],"direct_ancestors":[{"relation_name":"is_a","term_name":"platelet-derived growth factor receptor activity","termid":"GO:0005017"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0016740","GO:0004672","GO:0003674","GO:0003824","GO:0140096","GO:0016301","GO:0038023"],"is_obsolete":false,"name":"platelet-derived growth factor alpha-receptor activity","synonyms":[{"name":"PDGF alpha-receptor activity","type":"exact"},{"name":"alphaPDGF receptor activity","type":"exact"}],"termid":"GO:0005018"}


id: PBO:0047885
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, aphidicolin type, common, fra(5)(q21)","termid":"PBO:0047885"}


id: PBO:0067217
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 284, pseudogene","termid":"PBO:0067217"}


id: PBO:0002039
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"xylose and arabinose reductase (predicted)","termid":"PBO:0002039"}


id: PBO:0067388
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 493, pseudogene","termid":"PBO:0067388"}


id: PBO:0078838
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Pro (anticodon TGG) 3-2","termid":"PBO:0078838"}


id: SOFP:sp_comment
data:
  {"annotation_feature_type":"gene","cv_name":"feature_property","direct_ancestors":[{"relation_name":"is_a","term_name":"feature_property","termid":"SOFP:feature_property"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sp_comment","termid":"SOFP:sp_comment"}


id: SO:0002187
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An insertion of sequence from the HERV family of mobile elements with respect to a reference.","definition_xrefs":["NCBI:th"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"Endogenous_Retrovirus_LTR_retrotransposon","termid":"SO:0002268"},{"relation_name":"is_a","term_name":"mobile_element_insertion","termid":"SO:0001837"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HERV_insertion","synonyms":[{"name":"HERV insertion","type":"exact"}],"termid":"SO:0002187"}


id: PBO:0042569
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDKN2A divergent transcript","termid":"PBO:0042569"}


id: PBO:0059778
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CYB pseudogene 4","termid":"PBO:0059778"}


id: MONDO:0000600
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A specific phobia that involves an irrational fear of contracting a disease.","definition_xrefs":["DOID:0060048"],"direct_ancestors":[{"relation_name":"is_a","term_name":"specific phobia","termid":"MONDO:0012000"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nosophobia","secondary_identifiers":["MEDGEN:637105","UMLS:C0522182"],"termid":"MONDO:0000600","xrefs":{"Monarch":{"xref_id":"0000600"}}}


id: FYPO:0001172
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which hypermethylation of the 7-(mono)methylguanosine (m(7)G) cap structure at the 2' position of the guanosine residue to form a 2,2,7-trimethylguanosine cap structure is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal RNA modification","termid":"FYPO:0000370"},{"relation_name":"is_a","term_name":"abnormal RNA processing","termid":"FYPO:0001553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0006551","FYPO:0000002","FYPO:0001985","FYPO:0000294"],"is_obsolete":false,"name":"abnormal 7-methylguanosine cap hypermethylation","synonyms":[{"name":"abnormal 2,2,7-trimethylguanosine cap formation","type":"exact"},{"name":"abnormal 7-methylguanosine cap hypermethylation during mitotic cell cycle","type":"related"},{"name":"abnormal 7-methylguanosine cap hypermethylation during vegetative growth","type":"exact"},{"name":"abnormal TMG cap formation","type":"exact"},{"name":"abnormal conversion of m(7)G to m(3)G","type":"exact"},{"name":"abnormal snRNA capping","type":"narrow"},{"name":"abnormal snoRNA capping","type":"narrow"}],"termid":"FYPO:0001172"}


id: GO:0071695
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A developmental process, independent of morphogenetic (shape) change, that is required for an anatomical structure to attain its fully functional state.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental maturation","termid":"GO:0021700"},{"relation_name":"part_of","term_name":"anatomical structure development","termid":"GO:0048856"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anatomical structure maturation","termid":"GO:0071695"}


id: PBO:0051944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inositol-tetrakisphosphate 1-kinase","termid":"PBO:0051944"}


id: FYPO:0003659
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which all or part of the mating-type region is duplicated or deleted upon mating type switching.","definition_xrefs":["PMID:8290356","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mating type switching","termid":"FYPO:0000468"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0000293","FYPO:0005447"],"is_obsolete":false,"name":"abnormal mating type switching resulting in duplication or deletion in mating-type region","synonyms":[{"name":"abnormal mating type switching resulting in duplication or deletion in mating-type region during mitotic cell cycle","type":"related"},{"name":"abnormal mating type switching resulting in duplication or deletion in mating-type region during vegetative growth","type":"exact"}],"termid":"FYPO:0003659"}


id: PBO:0004328
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pig-M (predicted)","termid":"PBO:0004328"}


id: PBO:0042896
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complement factor H","termid":"PBO:0042896"}


id: MONDO:0021944
data:
  {"annotated_genes":["SJAG_04703","SJAG_02016"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85658],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012196"},{"annotations":[87507],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010378"}]},"cv_name":"mondo","definition":"A hearing disorder characterized by impaired transmission of signals through the auditory nerve, resulting in mild to severe hearing loss and poor speech perception.","definition_xrefs":["NCIT:C116364"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hearing loss disorder","termid":"MONDO:0005365"},{"relation_name":"is_a","term_name":"inherited auditory system disease","termid":"MONDO:0037940"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02016":null,"SJAG_04703":null},"genotype_count":0,"is_obsolete":false,"name":"auditory neuropathy","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:C538268","UMLS:C1852271","SCTID:443805006","OMIMPS:609129","GARD:9274","MEDGEN:338895"],"synonyms":[{"name":"ANSD","type":"exact"},{"name":"auditory dys-synchrony","type":"exact"},{"name":"auditory neuropathy","type":"exact"},{"name":"auditory neuropathy spectrum disorder","type":"exact"},{"name":"familial auditory neuropathy","type":"narrow"},{"name":"progressive auditory neuropathy","type":"narrow"}],"termid":"MONDO:0021944","terms_by_termid":{"MONDO:0010378":null,"MONDO:0012196":null},"xrefs":{"Monarch":{"xref_id":"0021944"}}}


id: GO:0030919
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The acetylation of peptidyl-serine to form peptidyl-O-acetyl-L-serine.","definition_xrefs":["PMID:7309355","PMID:489587","RESID:AA0364"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-serine modification","termid":"GO:0018209"},{"relation_name":"is_a","term_name":"peptidyl-serine acetylation","termid":"GO:0030920"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-serine O-acetylation","termid":"GO:0030919"}


id: SO:0000095
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A plastid gene from leucoplast sequence.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_origin","term_name":"leucoplast_sequence","termid":"SO:0000747"},{"relation_name":"is_a","term_name":"plastid_gene","termid":"SO:0000090"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leucoplast_gene","synonyms":[{"name":"leucoplast gene","type":"exact"}],"termid":"SO:0000095"}


id: GO:0072549
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: monocoumaroyl dicaffeoyl spermidine + NADPH + O2 = tricaffeoyl spermidine + NADP+ + H2O.","definition_xrefs":["GOC:kad","PMID:19779199"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tri-(coumaroyl or caffeoyl) spermidine meta-hydroxylase activity","termid":"GO:0072533"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"monocoumaroyl dicaffeoyl spermidine meta-hydroxylase activity","termid":"GO:0072549"}


id: MONDO:0015234
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Arachnodactyly - abnormal ossification - intellectual disability is a multiple congenital developmental anomalies syndrome characterized by arachnodactyly of fingers and toes associated with craniofacial dysmorphism (including abnormal cranial ossification, frontal bossing, flat calvaria, shallow deformed orbits resulting in exophtalmos, midface hypoplasia and micrognathia), feeding difficulties in infancy, infantile muscular hypotonia, and developmental delay leading to intellectual disability.","definition_xrefs":["Orphanet:1129"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arachnodactyly-abnormal ossification-intellectual disability syndrome","secondary_identifiers":["GARD:381","MEDGEN:419792","MESH:C537024","SCTID:720501007","UMLS:C2931398"],"synonyms":[{"name":"Kosztolanyi syndrome","type":"exact"},{"name":"arachnodactyly, abnormal ossification and intellectual disability","type":"related"},{"name":"arachnodactyly, abnormal ossification and mental retardation","type":"related"}],"termid":"MONDO:0015234","xrefs":{"Monarch":{"xref_id":"0015234"}}}


id: GO:0051439
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A cell cycle process that modulates the frequency, rate or extent of ubiquitin ligase activity that contributes to the mitotic cell cycle.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle (obsolete GO:0051439)","synonyms":[{"name":"mitotic APC regulator","type":"narrow"},{"name":"mitotic SCF complex regulator","type":"narrow"},{"name":"mitotic anaphase-promoting complex regulator","type":"narrow"},{"name":"mitotic ubiquitin ligase regulator","type":"related"},{"name":"mitotic ubiquitin-protein ligase regulator","type":"related"},{"name":"regulation of ubiquitin ligase activity during mitotic cell cycle","type":"related"},{"name":"regulation of ubiquitin-protein ligase activity during mitotic cell cycle","type":"related"}],"termid":"GO:0051439"}


id: GO:0031246
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the cell outer membrane consisting of the gene products that that penetrate the periplasmic side of the cell outer membrane only, either directly or via some covalently attached hydrophobic anchor.","definition_xrefs":["GOC:dos","GOC:mtg_sensu","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete intrinsic component of periplasmic side of cell outer membrane (obsolete GO:0031246)","synonyms":[{"name":"intrinsic to external side of cell outer membrane","type":"narrow"},{"name":"intrinsic to internal leaflet of cell outer membrane","type":"exact"},{"name":"intrinsic to internal side of cell outer membrane","type":"exact"},{"name":"intrinsic to internal side of outer membrane","type":"exact"}],"termid":"GO:0031246"}


id: GO:0051979
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The addition of O-acetyl ester groups to alginic acid, a linear polymer of D-mannuronate and L-guluronate.","definition_xrefs":["GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alginic acid metabolic process","termid":"GO:0042120"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975","GO:0044281"],"is_obsolete":false,"name":"alginic acid acetylation","synonyms":[{"name":"alginate acetylation","type":"exact"}],"termid":"GO:0051979"}


id: GO:0001029
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binding to an RNA polymerase III (Pol III) complex, typically composed of seventeen subunits, and with another protein, macromolecule, or complex, permitting those molecules to function in a coordinated way. Once recruited to an RNA polymerase III type 3 promoter by SNAP-type and TFIIIC-type factors, binds to DNA, recruits RNA polymerase III and facilitates the transition from the closed to the open complex.","definition_xrefs":["GOC:txnOH-2018","PMID:12381659"],"gene_count":0,"genotype_count":0,"name":"obsolete RNA polymerase III type 3 promoter TFIIIB-type transcription factor activity (obsolete GO:0001029)","synonyms":[{"name":"RNA polymerase III type 3 promoter polymerase recruiting transcription factor activity","type":"related"}],"termid":"GO:0001029"}


id: GO:0019476
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of D-lysine, the D-enantiomer of lysine; i.e. (2R)-2,6-diaminohexanoic acid.","definition_xrefs":["GOC:mah","GOC:jsg","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lysine catabolic process","termid":"GO:0006554"},{"relation_name":"is_a","term_name":"D-amino acid catabolic process","termid":"GO:0019478"},{"relation_name":"is_a","term_name":"D-lysine metabolic process","termid":"GO:0046441"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0008150","GO:0006520","GO:0044281"],"is_obsolete":false,"name":"D-lysine catabolic process","synonyms":[{"name":"D-lysine breakdown","type":"exact"},{"name":"D-lysine catabolism","type":"exact"},{"name":"D-lysine degradation","type":"exact"}],"termid":"GO:0019476"}


id: FYPO:0007698
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the activity of a DNA strand exchange inhibitor is absent.","definition_xrefs":["PMID:33493431","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic activity regulator phenotype","termid":"FYPO:0007690"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000652"],"is_obsolete":false,"name":"abolished DNA strand exchange inhibitor activity","synonyms":[{"name":"DNA strand exchange inhibitor activity abolished","type":"exact"},{"name":"abolished RecA-family recombinase inhibitor activity","type":"exact"},{"name":"abolished negative regulation of RecA-family recombinase activity","type":"related"}],"termid":"FYPO:0007698"}


id: PBO:0080286
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 49 pseudogene","termid":"PBO:0080286"}


id: PBO:0057205
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 375","termid":"PBO:0057205"}


id: PBO:0066453
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"REXO1 like 5, pseudogene","termid":"PBO:0066453"}


id: GO:0036251
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under salt stress. The stress is usually an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.","definition_xrefs":["GOC:al"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transcription from RNA polymerase II promoter in response to salt stress (obsolete GO:0036251)","termid":"GO:0036251"}


id: PBO:0035992
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein-protein_interaction_during_cellular_response_to_hydrogen_peroxide","termid":"PBO:0035992"}


id: FYPO:0003071
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which a single-stranded DNA 5'-3' exodeoxyribonuclease activity is absent.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal single-stranded DNA 5'-3' exodeoxyribonuclease activity","termid":"FYPO:0003070"},{"relation_name":"is_a","term_name":"abolished nuclease activity","termid":"FYPO:0003164"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000654","FYPO:0000652","FYPO:0000661","FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"abolished single-stranded DNA 5'-3' exodeoxyribonuclease activity","synonyms":[{"name":"single-stranded DNA 5'-3' exodeoxyribonuclease activity abolished","type":"exact"}],"termid":"FYPO:0003071"}


id: GO:0061924
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the formation of radial glial scaffolds. The scaffolds are used as a substrate for the radial migration of cells.","definition_xrefs":["PMID:22076441"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell morphogenesis","termid":"GO:0022604"},{"relation_name":"regulates","term_name":"formation of radial glial scaffolds","termid":"GO:0021943"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of formation of radial glial scaffolds","synonyms":[{"name":"regulation of Bergmann fiber biosynthesis","type":"related"},{"name":"regulation of Bergmann fiber formation","type":"related"},{"name":"regulation of radial glial scaffold formation","type":"exact"}],"termid":"GO:0061924"}


id: MONDO:0012383
data:
  {"annotated_genes":["SJAG_04210"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86952],"is_not":false,"summary":null,"term":"MONDO:0012383"}]},"cv_name":"mondo","definition":"The primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency is characterized by a specific natural-killer (NK) cell deficiency and susceptibility to viral diseases. It has been described in four children from a large inbred kindred. Three out of the four children reported developed a viral illness. The mode of transmission is most likely autosomal recessive. The causative gene has been localized to within a 12-Mb region on chromosome 8p11.23-q11.21.","definition_xrefs":["Orphanet:75391"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immunodeficiency disease","termid":"MONDO:0021094"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04210":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"primary immunodeficiency with natural-killer cell deficiency and adrenal insufficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:609981","SCTID:724275005","GARD:16695","UMLS:C1864947","MESH:C566492","DOID:0111967","NANDO:2200771","MEDGEN:351256","NCIT:C123729"],"synonyms":[{"name":"IMD54","type":"related"},{"name":"NKGCD","type":"related"},{"name":"immunodeficiency 54","type":"related"},{"name":"mini-chromosome maintenance 4","type":"exact"},{"name":"natural KILLER cell and glucocorticoid deficiency with DNA repair defect","type":"related"},{"name":"natural Killer cell deficiency, familial isolated","type":"related"},{"name":"primary immunodeficiency due to MCM4 deficiency","type":"exact"}],"termid":"MONDO:0012383","terms_by_termid":{"MONDO:0012383":null},"xrefs":{"Monarch":{"xref_id":"0012383"}}}


id: PBO:0064955
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRAME family member 7","termid":"PBO:0064955"}


id: PBO:0032762
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IMP 5'-nucleotidase Isn1 (predicted)","termid":"PBO:0032762"}


id: GO:1902858
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving propionyl-CoA.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators","GO_REF:0000068","PMID:15514053"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty-acyl-CoA metabolic process","termid":"GO:0035337"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0006629","GO:0008150","GO:0006790"],"is_obsolete":false,"name":"propionyl-CoA metabolic process","synonyms":[{"name":"propionyl-CoA metabolism","type":"exact"}],"termid":"GO:1902858"}


id: FYPO:0007589
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a protein that is not normally found in endosomes is observed there.","definition_xrefs":["PMID:19624755","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein mislocalized to cytoplasm during vegetative growth","termid":"FYPO:0000783"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0000138","FYPO:0001320"],"is_obsolete":false,"name":"protein mislocalized to endosome","synonyms":[{"name":"ectopic protein localization to endosome","type":"exact"},{"name":"protein mislocalised to endosome","type":"exact"},{"name":"protein mislocalized to endosome during mitotic cell cycle","type":"related"},{"name":"protein mislocalized to endosome during vegetative growth","type":"exact"}],"termid":"FYPO:0007589"}


id: MONDO:0019601
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Autosomal recessive form of axonal hereditary motor and sensory neuropathy.","definition_xrefs":["MONDO:patterns/autosomal_recessive"],"gene_count":0,"genotype_count":0,"name":"obsolete autosomal recessive axonal hereditary motor and sensory neuropathy (obsolete MONDO:0019601)","secondary_identifiers":["Orphanet:91024"],"synonyms":[{"name":"AR-CMT2","type":"exact"},{"name":"autosomal recessive axonal Charcot-Marie-Tooth disease type 2","type":"exact"},{"name":"axonal hereditary motor and sensory neuropathy, autosomal recessive","type":"exact"}],"termid":"MONDO:0019601","xrefs":{"Monarch":{"xref_id":"0019601"}}}


id: PBO:0002436
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-azetidine-2-carboxylic acid acetyltransferase","termid":"PBO:0002436"}


id: PBO:0087449
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of a complex that associates with actin filaments; forms a complex with Aim21p that inhibits barbed end F-actin assembly; elevates actin monomer pools to increase endocytotic efficiency and to regulate the distribution of actin between cables and patches; Aim21p/Tda2p forms a larger complex with actin capping proteins Cap1p and Cap2p; TcTex1-type dynein light chain family member; null mutant is sensitive to expression of the top1-T722A allele","termid":"PBO:0087449"}


id: PBO:0082471
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Calmodulin-dependent protein kinase; negative feedback controller of calcium/calcineurin signalling pathway, also has additional Crz1-independent role in promoting calcium tolerance; amino acid sequence similar to mammalian Cam Kinase II; CMK2 has a paralog, CMK1, that arose from the whole genome duplication","termid":"PBO:0082471"}


id: FYPO:0007359
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of heavy water (D2O) than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002682"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0002682","FYPO:0005447","FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"resistance to heavy water","synonyms":[{"name":"resistance to D2O","type":"exact"},{"name":"resistance to dideuterium oxide","type":"exact"},{"name":"resistance to heavy water during mitotic cell cycle","type":"related"},{"name":"resistance to heavy water during vegetative growth","type":"exact"},{"name":"resistant to heavy water","type":"exact"}],"termid":"FYPO:0007359"}


id: GO:0001980
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that modulates blood pressure by the detection of carbon dioxide levels in the brain stem. Increased levels activate the sympathetic vasoconstrictor mechanism increasing the force with which blood flows through the circulatory system.","definition_xrefs":["ISBN:0721643949","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system process involved in regulation of systemic arterial blood pressure","termid":"GO:0001976"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of systemic arterial blood pressure by ischemic conditions","synonyms":[{"name":"CNS ischemic response","type":"related"},{"name":"ischemic control of blood pressure","type":"related"},{"name":"ischemic regulation of systemic arterial blood pressure","type":"exact"}],"termid":"GO:0001980"}


id: GO:0089704
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of L-glutamate out of the vacuole, across the vacuolar membrane.","definition_xrefs":["PMID:21307582"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-glutamate transmembrane transport","termid":"GO:0015813"},{"relation_name":"is_a","term_name":"amino acid transmembrane export from vacuole","termid":"GO:0032974"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0055085","GO:0051179"],"is_obsolete":false,"name":"L-glutamate transmembrane export from vacuole","termid":"GO:0089704"}


id: PBO:0080325
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 89 pseudogene","termid":"PBO:0080325"}


id: GO:0006718
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of juvenile hormones, the three sesquiterpenoid derivatives that function to maintain the larval state of insects at molting and that may be required for other processes, e.g. oogenesis.","definition_xrefs":["ISBN:0198547684","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"juvenile hormone metabolic process","termid":"GO:0006716"},{"relation_name":"is_a","term_name":"sesquiterpenoid biosynthetic process","termid":"GO:0016106"},{"relation_name":"is_a","term_name":"hormone biosynthetic process","termid":"GO:0042446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"juvenile hormone biosynthetic process","synonyms":[{"name":"juvenile hormone anabolism","type":"exact"},{"name":"juvenile hormone biosynthesis","type":"exact"},{"name":"juvenile hormone formation","type":"exact"},{"name":"juvenile hormone synthesis","type":"exact"}],"termid":"GO:0006718"}


id: PBO:0091324
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human SSB","termid":"PBO:0091324"}


id: GO:0102753
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: H+ + chlorophyllide b(1-) + 2-trans,6-trans,10-trans-geranylgeranyl diphosphate = geranylgeranyl-chlorophyll b + diphosphoric acid.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete chlorophyllide b:geranyl-geranyl diphosphate geranyl-geranyltransferase activity (obsolete GO:0102753)","termid":"GO:0102753"}


id: PBO:0048774
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GDP-mannose pyrophosphorylase A","termid":"PBO:0048774"}


id: PR:Q10484
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- scs22 gene.","definition_xrefs":["UniProtKB:Q10484","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C17C9.12 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC17C9.12","synonyms":[{"name":"Spom972h-scs22","type":"exact"}],"termid":"PR:Q10484"}


id: SO:0001738
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region of the H4 histone whereby multiple lysines are acylated.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone_acylation_region","termid":"SO:0001737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"H4K_acylation_region","synonyms":[{"name":"H4K acylation region","type":"exact"},{"name":"H4KAc","type":"related"}],"termid":"SO:0001738"}


id: PBO:0064196
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phospholipase A and acyltransferase 4","termid":"PBO:0064196"}


id: PR:O94246
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A glutamate--cysteine ligase regulatory subunit that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR13295:SF4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamate--cysteine ligase regulatory subunit (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC737.06c","secondary_identifiers":["UniProtKB:O94246"],"synonyms":[{"name":"GCS light chain (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-GCLM","type":"exact"},{"name":"gamma-ECS regulatory subunit (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"gamma-glutamylcysteine synthetase regulatory subunit (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"glutamate--cysteine ligase modifier subunit (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94246"}


id: PATO:0002418
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An affinity inhering in a tissue constituent by virtue of the bearer exhibiting a molecular interaction for acidic dyes under specific ph conditions.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"affinity","termid":"PATO:0002070"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acidophilic","termid":"PATO:0002418"}


id: PBO:0052478
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kelch domain containing 4","termid":"PBO:0052478"}


id: PBO:0084176
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Histidinol-phosphate aminotransferase; catalyzes the seventh step in histidine biosynthesis; responsive to general control of amino acid biosynthesis; mutations cause histidine auxotrophy and sensitivity to Cu, Co, and Ni salts","termid":"PBO:0084176"}


id: GO:0043183
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a vascular endothelial growth factor receptor 1.","definition_xrefs":["GOC:st"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vascular endothelial growth factor receptor binding","termid":"GO:0005172"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"vascular endothelial growth factor receptor 1 binding","synonyms":[{"name":"Flt-1 binding","type":"exact"},{"name":"VEGF receptor 1 binding","type":"exact"},{"name":"VEGFR 1 binding","type":"exact"}],"termid":"GO:0043183"}


id: FYPO:0005635
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the spindle begins later than normal during the first meiotic nuclear division.","definition_xrefs":["PMID:21920317","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to meiotic spindle","termid":"FYPO:0006454"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"delayed onset of protein localization to spindle during meiosis I","synonyms":[{"name":"delayed onset of protein localisation to spindle during meiosis I","type":"exact"},{"name":"delayed onset of protein localization to meiosis I spindle","type":"exact"},{"name":"delayed onset of protein localization to meiotic spindle during meiosis I","type":"exact"},{"name":"delayed onset of protein localization to spindle during first meiotic nuclear division","type":"exact"},{"name":"delayed protein localization to spindle during meiosis I","type":"exact"}],"termid":"FYPO:0005635"}


id: PBO:0041928
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromobox 1 pseudogene 3","termid":"PBO:0041928"}


id: PBO:0059602
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ATP6 pseudogene 14","termid":"PBO:0059602"}


id: PBO:0058103
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4318","termid":"PBO:0058103"}


id: MONDO:0015362
data:
  {"annotated_genes":["SJAG_01352","SJAG_02695","SJAG_02919","SJAG_01537","SJAG_04567","SJAG_05289","SJAG_01522","SJAG_03815"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85512],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010043"},{"annotations":[86351,86353,86352],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008025"},{"annotations":[86962,86961,86963],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012080"},{"annotations":[86645,86646,86647],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013243"},{"annotations":[85655],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0015353"},{"annotations":[86501],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013884"},{"annotations":[86031],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030860"},{"annotations":[86526],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011879"},{"annotations":[85558],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0060585"}]},"cv_name":"mondo","definition":"Autosomal dominant form of distal hereditary motor neuropathy.","definition_xrefs":["MONDO:patterns/autosomal_dominant"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"spinal muscular atrophy","termid":"MONDO:0001516"},{"relation_name":"is_a","term_name":"distal hereditary motor neuropathy","termid":"MONDO:0018894"}],"gene_count":8,"genes_by_uniquename":{"SJAG_01352":null,"SJAG_01522":null,"SJAG_01537":null,"SJAG_02695":null,"SJAG_02919":null,"SJAG_03815":null,"SJAG_04567":null,"SJAG_05289":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244","MONDO:0005559","MONDO:0000426"],"is_obsolete":false,"name":"neuronopathy, distal hereditary motor, autosomal dominant","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["Orphanet:140465","GARD:19926","OMIMPS:182960","UMLS:C5548212","MEDGEN:1787720","DOID:0111198"],"synonyms":[{"name":"autosomal dominant dHMN","type":"exact"},{"name":"autosomal dominant distal hereditary motor neuropathy","type":"exact"},{"name":"autosomal dominant distal spinal muscular atrophy","type":"exact"},{"name":"distal hereditary motor neuropathy, autosomal dominant","type":"exact"}],"termid":"MONDO:0015362","terms_by_termid":{"MONDO:0008025":null,"MONDO:0010043":null,"MONDO:0011879":null,"MONDO:0012080":null,"MONDO:0013243":null,"MONDO:0013884":null,"MONDO:0015353":null,"MONDO:0030860":null,"MONDO:0060585":null},"xrefs":{"Monarch":{"xref_id":"0015362"}}}


id: MONDO:0017451
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A non-syndromic brachydactyly that involves the manus.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-syndromic brachydactyly","termid":"MONDO:0017424"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-syndromic brachydactyly of fingers","secondary_identifiers":["Orphanet:294996"],"synonyms":[{"name":"manus non-syndromic brachydactyly","type":"exact"},{"name":"non-syndromic brachydactyly of manus","type":"exact"},{"name":"short fingers","type":"exact"}],"termid":"MONDO:0017451","xrefs":{"Monarch":{"xref_id":"0017451"}}}


id: MONDO:0007442
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Dentinogenesis imperfecta type 3 (DGI-3) is a rare, severe form of dentinogenesis imperfecta (DGI) characterized by opalescent primary and permanent teeth, marked attrition, large pulp chambers, multiple pulp exposure and shell teeth radiographically (i.e. teeth which appear hollow due to dentin hypotrophy).","definition_xrefs":["Orphanet:166265"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"dentinogenesis imperfecta","termid":"MONDO:0018849"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dentinogenesis imperfecta type 3","secondary_identifiers":["MEDGEN:97995","OMIM:125500","SCTID:234970006","MESH:C538216","icd11.foundation:518257495","UMLS:C0399378","GARD:10144","ICD9:520.5"],"synonyms":[{"name":"DGI-III","type":"exact"},{"name":"Dentinogenesis Imperfecta Type III","type":"exact"},{"name":"brandywine type dentinogenesis imperfecta","type":"exact"},{"name":"dentinogenesis imperfecta Shields type 3","type":"exact"},{"name":"dentinogenesis imperfecta type III","type":"exact"},{"name":"dentinogenesis imperfecta, Shields type 3","type":"exact"},{"name":"dentinogenesis imperfecta, Shields type III","type":"exact"}],"termid":"MONDO:0007442","xrefs":{"Monarch":{"xref_id":"0007442"}}}


id: PBO:0029240
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_protein_localization_to_telomeric_heterochromatin_during_vegetative_growth","termid":"PBO:0029240"}


id: PBO:0091982
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Defective Meiosis and Sporulation","termid":"PBO:0091982"}


id: PBO:0045456
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA damage regulated autophagy modulator 1","termid":"PBO:0045456"}


id: PBO:0051058
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy diversity 3-10","termid":"PBO:0051058"}


id: PATO:0002464
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A positional quality inhering in a bearer by virtue of some aspect of the bearer extending past the position of another entity.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"position","termid":"PATO:0000140"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"extends beyond","termid":"PATO:0002464"}


id: PBO:0071272
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPL24 pseudogene 6","termid":"PBO:0071272"}


id: GO:0043957
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: acryloyl-CoA + NADPH + H+ = propionyl-CoA + NADP+.","definition_xrefs":["GOC:jl","PMID:11821399","RHEA:26454"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor","termid":"GO:0016628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"acryloyl-CoA reductase (NADPH) activity","secondary_identifiers":["MetaCyc:RXN-9087","EC:1.3.1.84","KEGG_REACTION:R00919"],"synonyms":[{"name":"AMP-dependent synthetase and ligase","type":"broad"},{"name":"AMP-dependent synthetase and ligase:enoyl-CoA hydratase/isomerase","type":"broad"},{"name":"acetyl-coenzyme A synthetase","type":"broad"},{"name":"acetyl-coenzyme A synthetase/GroES-like domain","type":"broad"},{"name":"acrylyl-CoA reductase (NADPH) activity","type":"exact"},{"name":"enoyl-CoA hydratase/isomerase","type":"broad"}],"termid":"GO:0043957"}


id: _global:different_in_magnitude_relative_to
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.","definition_xrefs":["PATOC:CJM"],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"different_in_magnitude_relative_to","termid":"_global:different_in_magnitude_relative_to"}


id: GO:0004084
data:
  {"annotated_genes":["SJAG_04149"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[110809],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052656"},{"annotations":[110810],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052654"},{"annotations":[110811],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0052655"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a branched-chain amino acid (L-leucine, L-isoleucine and L-valine) + 2-oxoglutarate = L-glutamate + a 2-oxocarboxylate derived from the branched-chain amino acid.","definition_xrefs":["EC:2.6.1.42"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04149":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016769"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0003824","GO:0016769"],"is_obsolete":false,"name":"branched-chain-amino-acid transaminase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-70724","Reactome:R-HSA-508189","Reactome:R-HSA-70723","Reactome:R-HSA-508179"],"synonyms":[{"name":"L-branched chain amino acid aminotransferase activity","type":"related"},{"name":"branched-chain amino acid aminotransferase activity","type":"exact"},{"name":"branched-chain amino acid-glutamate transaminase activity","type":"related"},{"name":"branched-chain aminotransferase activity","type":"related"},{"name":"branched-chain-amino-acid:2-oxoglutarate aminotransferase activity","type":"related"},{"name":"glutamate-branched-chain amino acid transaminase activity","type":"related"},{"name":"transaminase B activity","type":"related"}],"termid":"GO:0004084","terms_by_termid":{"GO:0052654":null,"GO:0052655":null,"GO:0052656":null}}


id: PBO:0079983
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"USP9Y pseudogene 21","termid":"PBO:0079983"}


id: GO:0140416
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A molecular function regulator that inhibits the activity of a transcription regulator via direct binding and/or post-translational modification.","definition_xrefs":["PMID:10652346"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular function inhibitor activity","termid":"GO:0140678"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0140678"}],"interesting_parent_ids":["GO:0003674","GO:0140678","GO:0098772"],"is_obsolete":false,"name":"transcription regulator inhibitor activity","synonyms":[{"name":"DNA-binding transcription factor inhibitor activity","type":"narrow"}],"termid":"GO:0140416"}


id: MONDO:0958324
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"generalized epilepsy with febrile seizures plus","termid":"MONDO:0018214"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"generalized epilepsy with febrile seizures plus, type 12","secondary_identifiers":["MEDGEN:1854923","UMLS:C5935592","OMIM:620755"],"termid":"MONDO:0958324","xrefs":{"Monarch":{"xref_id":"0958324"}}}


id: MONDO:0012446
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"epidermal disease","termid":"MONDO:0019268"},{"relation_name":"is_a","term_name":"hereditary skin disorder","termid":"MONDO:0100118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"seborrhea-like dermatitis with psoriasiform elements","secondary_identifiers":["UMLS:C1853258","MEDGEN:342832","MESH:C565217","Orphanet:168606","OMIM:610227","GARD:17039"],"synonyms":[{"name":"seborrhea-like dermatitis with psoriasiform elements","type":"exact"}],"termid":"MONDO:0012446","xrefs":{"Monarch":{"xref_id":"0012446"}}}


id: PBO:0087658
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the HOPS and the CORVET complexes; part of the Class C Vps complex essential for membrane docking and fusion at Golgi-to-endosome and endosome-to-vacuole protein transport stages","termid":"PBO:0087658"}


id: PBO:0082672
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the dynactin complex; localized to the pointed end of the Arp1p filament; may regulate membrane association of the complex","termid":"PBO:0082672"}


id: PBO:0027195
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-protein_mislocalized_to_lateral_cell_cortex","termid":"PBO:0027195"}


id: PBO:0077088
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tigger transposable element derived 3","termid":"PBO:0077088"}


id: PBO:0077438
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 171","termid":"PBO:0077438"}


id: PBO:0062153
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily G member 3 pseudogene","termid":"PBO:0062153"}


id: GO:0061629
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a sequence-specific DNA binding RNA polymerase II transcription factor, any of the factors that interact selectively and non-covalently with a specific DNA sequence in order to modulate transcription.","definition_xrefs":["GOC:dph","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA-binding transcription factor binding","termid":"GO:0140297"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"RNA polymerase II-specific DNA-binding transcription factor binding","secondary_identifiers":["GO:0001102","GO:0001103","GO:0001085"],"synonyms":[{"name":"RNA polymerase II activating transcription factor binding","type":"related"},{"name":"RNA polymerase II repressing transcription factor binding","type":"related"},{"name":"RNA polymerase II sequence-specific DNA binding transcription factor binding","type":"exact"},{"name":"RNA polymerase II sequence-specific DNA-binding transcription factor binding","type":"exact"},{"name":"RNA polymerase II transcription factor binding","type":"related"}],"termid":"GO:0061629"}


id: PBO:0077693
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tyrosine kinase non receptor 1","termid":"PBO:0077693"}


id: PBO:0077702
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"troponin C1, slow skeletal and cardiac type","termid":"PBO:0077702"}


id: GO:0016157
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: an NDP-alpha-D-glucose + D-fructose = a ribonucleoside 5'-diphosphate + H+ + sucrose. The phosphate acceptor can be UDP or ADP.","definition_xrefs":["RHEA:16241"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glucosyltransferase activity","termid":"GO:0035251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0016757","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"sucrose synthase activity","secondary_identifiers":["EC:2.4.1.13","MetaCyc:SUCROSE-SYNTHASE-RXN"],"synonyms":[{"name":"NDP-glucose:D-fructose 2-alpha-D-glucosyltransferase activity","type":"related"},{"name":"UDP-glucose-fructose glucosyltransferase activity","type":"related"},{"name":"UDPglucose-fructose glucosyltransferase activity","type":"related"},{"name":"sucrose synthetase activity","type":"related"},{"name":"sucrose-UDP glucosyltransferase activity","type":"related"},{"name":"sucrose-uridine diphosphate glucosyltransferase activity","type":"related"},{"name":"uridine diphosphoglucose-fructose glucosyltransferase activity","type":"related"}],"termid":"GO:0016157"}


id: GO:0001945
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a lymph vessel over time, from its formation to the mature structure.","definition_xrefs":["GOC:dph","UBERON:0001473"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"vasculature development","termid":"GO:0001944"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lymph vessel development","termid":"GO:0001945"}


id: PBO:0001147
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial succinate dehydrogenase assembly factor 1 (predicted)","termid":"PBO:0001147"}


id: PBO:0038573
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin binding Rho activating protein","termid":"PBO:0038573"}


id: GO:1903962
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of arachidonate from one side of a membrane to the other.","definition_xrefs":["GOC:bhm","GOC:TermGenie","PMID:15642721","GO_REF:0000066"],"direct_ancestors":[{"relation_name":"is_a","term_name":"long-chain fatty acid transmembrane transporter activity","termid":"GO:0005324"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"arachidonate transmembrane transporter activity","synonyms":[{"name":"arachidonate transporter activity","type":"related"},{"name":"arachidonic acid transporter activity","type":"related"}],"termid":"GO:1903962"}


id: PBO:0047944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, folic acid type, rare, fra(16)(p13.11)","termid":"PBO:0047944"}


id: GO:0048795
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structure of the swim bladder is generated and organized. The swim bladder is used by some fishes to maintain buoyancy and may function in addition as a sound producing organ, a sound receptor, and a respiratory organ.","definition_xrefs":["GOC:mh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"animal organ morphogenesis","termid":"GO:0009887"},{"relation_name":"part_of","term_name":"swim bladder development","termid":"GO:0048794"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"swim bladder morphogenesis","synonyms":[{"name":"gas bladder morphogenesis","type":"exact"}],"termid":"GO:0048795"}


id: MONDO:0800410
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UV-induced skin damage, susceptibility to","secondary_identifiers":["UMLS:C2678403","MEDGEN:394510"],"termid":"MONDO:0800410","xrefs":{"Monarch":{"xref_id":"0800410"}}}


id: MONDO:0020184
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare eyebrow/eyelashes anomaly (obsolete MONDO:0020184)","secondary_identifiers":["Orphanet:98594"],"termid":"MONDO:0020184","xrefs":{"Monarch":{"xref_id":"0020184"}}}


id: PBO:0050520
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homeobox D8","termid":"PBO:0050520"}


id: GO:0048624
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a new plantlet develops from a meristem on the plant body. As part of this process, when the plantlet is large enough to live independently, the physical connection between the new plantlet and the main plant is severed.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"asexual reproduction","termid":"GO:0019954"},{"relation_name":"is_a","term_name":"multi-multicellular organism process","termid":"GO:0044706"},{"relation_name":"is_a","term_name":"meristem development","termid":"GO:0048507"},{"relation_name":"is_a","term_name":"multicellular organismal reproductive process","termid":"GO:0048609"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"plantlet formation on parent plant","synonyms":[{"name":"vegetative vivipary","type":"broad"},{"name":"vivipary","type":"broad"}],"termid":"GO:0048624"}


id: GO:0060974
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of a cell from one site to another that contribute to the formation of the heart. The initial heart structure is made up of mesoderm-derived heart progenitor cells and neural crest-derived cells.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell migration involved in heart development","termid":"GO:0060973"},{"relation_name":"part_of","term_name":"heart formation","termid":"GO:0060914"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell migration involved in heart formation","termid":"GO:0060974"}


id: MONDO:0025510
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A granulomatous disease caused by the aquatic organism pythium insidiosum and occurring primarily in horses, cattle, dogs, cats, and fishes. It is classified into three forms: ocular, cutaneous, and arterial.","definition_xrefs":["MESH:D058968"],"direct_ancestors":[{"relation_name":"is_a","term_name":"infectious disease, non-human animal","termid":"MONDO:0700049"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pythiosis, non-human animal","termid":"MONDO:0025510","xrefs":{"Monarch":{"xref_id":"0025510"}}}


id: GO:0009852
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of auxins, a group of plant hormones that regulate aspects of plant growth.","definition_xrefs":["GOC:lr","ISBN:0198547684","GOC:lm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"auxin metabolic process","termid":"GO:0009850"},{"relation_name":"is_a","term_name":"hormone catabolic process","termid":"GO:0042447"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"auxin catabolic process","synonyms":[{"name":"auxin breakdown","type":"exact"},{"name":"auxin catabolism","type":"exact"},{"name":"auxin degradation","type":"exact"}],"termid":"GO:0009852"}


id: PBO:0084350
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Large subunit of the nuclear mRNA cap-binding protein complex; interacts with Npl3p to carry nuclear poly(A)+ mRNA to cytoplasm; also involved in nuclear mRNA degradation and telomere maintenance; orthologous to mammalian CBP80","termid":"PBO:0084350"}


id: GO:0140206
data:
  {"annotated_genes":["SJAG_01983"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72196],"is_not":false,"summary":null,"term":"GO:0140206"}]},"cv_name":"biological_process","definition":"The directed movement of a dipeptide from outside of a cell, across the plasma membrane and into the cytosol.","definition_xrefs":["PMID:22226946"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dipeptide transmembrane transport","termid":"GO:0035442"},{"relation_name":"is_a","term_name":"oligopeptide import across plasma membrane","termid":"GO:0140205"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01983":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0055085","GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"dipeptide import across plasma membrane","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0140206","terms_by_termid":{"GO:0140206":null}}


id: PBO:0091547
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae SPT15","termid":"PBO:0091547"}


id: GO:0042705
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a photoreceptor cell found in the ocellus.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"photoreceptor cell differentiation","termid":"GO:0046530"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ocellus photoreceptor cell differentiation","termid":"GO:0042705"}


id: MONDO:0100088
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete late-onset familial alzheimer disease (obsolete MONDO:0100088)","termid":"MONDO:0100088","xrefs":{"Monarch":{"xref_id":"0100088"}}}


id: SO:0001372
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"3_methyluridine is a modified uridine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_uridine","termid":"SO:0001277"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"three_methyluridine","secondary_identifiers":["RNAMOD:085"],"synonyms":[{"name":"3-methyluridine","type":"exact"},{"name":"m3U","type":"exact"},{"name":"three methyluridine","type":"exact"}],"termid":"SO:0001372"}


id: FYECO:0000097
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"Recovery from nitrogen starvation: cells are first grown in minimal medium containing no nitrogen for 24-48h. This medium is then replaced with nitrogen containing rich medium and cells are allowed to grow for 12-24h.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nitrogen starvation and recovery","termid":"FYECO:0000110"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"24-48h nitrogen starvation followed by 12-24h recovery in rich medium","termid":"FYECO:0000097"}


id: PBO:0084788
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial protein; forms heterodimer complex with Mss1p that performs 5-carboxymethylaminomethyl modification of the wobble uridine base in mitochondrial tRNAs; required for respiration in paromomycin-resistant 15S rRNA mutants; human homolog MTO1 can complement yeast null mutant","termid":"PBO:0084788"}


id: GO:1905817
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of dorsal/ventral axon guidance.","definition_xrefs":["GO_REF:0000058","PMID:18434533","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of axon guidance","termid":"GO:1902669"},{"relation_name":"is_a","term_name":"regulation of dorsal/ventral axon guidance","termid":"GO:1905815"},{"relation_name":"positively_regulates","term_name":"dorsal/ventral axon guidance","termid":"GO:0033563"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of dorsal/ventral axon guidance","synonyms":[{"name":"activation of dorsal-ventral axon guidance","type":"narrow"},{"name":"activation of dorsal/ventral axon guidance","type":"narrow"},{"name":"activation of dorsal/ventral axon pathfinding","type":"narrow"},{"name":"activation of dorsoventral axon guidance","type":"narrow"},{"name":"positive regulation of dorsal-ventral axon guidance","type":"exact"},{"name":"positive regulation of dorsal/ventral axon pathfinding","type":"exact"},{"name":"positive regulation of dorsoventral axon guidance","type":"exact"},{"name":"up regulation of dorsal-ventral axon guidance","type":"exact"},{"name":"up regulation of dorsal/ventral axon guidance","type":"exact"},{"name":"up regulation of dorsal/ventral axon pathfinding","type":"exact"},{"name":"up regulation of dorsoventral axon guidance","type":"exact"},{"name":"up-regulation of dorsal-ventral axon guidance","type":"exact"},{"name":"up-regulation of dorsal/ventral axon guidance","type":"exact"},{"name":"up-regulation of dorsal/ventral axon pathfinding","type":"exact"},{"name":"up-regulation of dorsoventral axon guidance","type":"exact"},{"name":"upregulation of dorsal-ventral axon guidance","type":"exact"},{"name":"upregulation of dorsal/ventral axon guidance","type":"exact"},{"name":"upregulation of dorsal/ventral axon pathfinding","type":"exact"},{"name":"upregulation of dorsoventral axon guidance","type":"exact"}],"termid":"GO:1905817"}


id: PBO:0031433
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_actin_cortical_patch_organization","termid":"PBO:0031433"}


id: PBO:0040083
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARSD antisense RNA 1","termid":"PBO:0040083"}


id: PBO:0109607
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 90 member A15","termid":"PBO:0109607"}


id: PBO:0069776
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1060, pseudogene","termid":"PBO:0069776"}


id: PR:Q9HDY0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ypt71 gene.","definition_xrefs":["UniProtKB:Q9HDY0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTP-binding protein ypt71 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAPB1A10.10c","synonyms":[{"name":"Spom972h-ypt71","type":"exact"}],"termid":"PR:Q9HDY0"}


id: GO:0140373
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The modification of histone H3 by the addition of one or more ubiquitin groups to a lysine residue at position 14 of the histone.","definition_xrefs":["PMID:31468675","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H3-K14 ubiquitination (obsolete GO:0140373)","synonyms":[{"name":"histone H3 ubiquitination at K14","type":"exact"},{"name":"histone H3-K14 ubiquitylation","type":"exact"},{"name":"histone H3K14 ubiquitination","type":"exact"}],"termid":"GO:0140373"}


id: PBO:0072556
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RRAGAP1 antisense RNA 1","termid":"PBO:0072556"}


id: FYPO:0003416
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells contain more cytoplasmic membrane-bounded vesicles than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal subcellular component during vegetative growth","termid":"FYPO:0001322"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"cytoplasmic vesicles present in increased numbers","synonyms":[{"name":"additional cytoplasmic vesicles present during vegetative growth","type":"exact"},{"name":"cytoplasmic vesicles present in greater numbers","type":"exact"},{"name":"cytoplasmic vesicles present in increased numbers during mitotic cell cycle","type":"related"},{"name":"cytoplasmic vesicles present in increased numbers during vegetative growth","type":"exact"},{"name":"extra cytoplasmic vesicles during vegetative growth","type":"exact"}],"termid":"FYPO:0003416"}


id: FYPO:0002234
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of one or more sterol esters measured in a cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased level of substance in cell during vegetative growth","termid":"FYPO:0001329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased cellular sterol ester level","synonyms":[{"name":"decreased cellular sterol ester level during mitotic cell cycle","type":"related"},{"name":"decreased cellular sterol ester level during vegetative growth","type":"exact"},{"name":"decreased level of sterol ester in cell","type":"exact"},{"name":"decreased sterol ester accumulation","type":"related"},{"name":"reduced cellular sterol ester level","type":"exact"},{"name":"reduced level of sterol ester in cell","type":"exact"}],"termid":"FYPO:0002234"}


id: PBO:0024872
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Swr1 complex bromodomain subunit Bdf1","termid":"PBO:0024872"}


id: PBO:0077275
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 14C","termid":"PBO:0077275"}


id: MOD:01405
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-cysteine residue and an L-proline residue to form L-proline thiazole-4-carboxylic acid.","definition_xrefs":["PubMed:8557573","RESID:AA0482","PubMed:7592021"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thiazole/thiazoline ring crosslinked residues","termid":"MOD:01420"},{"relation_name":"is_a","term_name":"didehydrogenated residue","termid":"MOD:01888"},{"relation_name":"is_a","term_name":"crosslinked L-proline residue","termid":"MOD:02054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"L-proline thiazole-4-carboxylic acid","synonyms":[{"name":"2-[(2S)-pyrrolidin-2-yl]-1,3-thiazole-4-carboxylic acid","type":"exact"},{"name":"CROSSLNK Thiazole-4-carboxylic acid (Pro-Cys)","type":"exact"},{"name":"L-proline thiazole-4-carboxylic acid","type":"exact"}],"termid":"MOD:01405"}


id: PBO:0079151
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TSPAN11 antisense RNA 1","termid":"PBO:0079151"}


id: MONDO:0043135
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"blindness (disorder)","termid":"MONDO:0001941"},{"relation_name":"is_a","term_name":"microphthalmia","termid":"MONDO:0021129"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"microcephaly microphthalmos blindness","secondary_identifiers":["MESH:C537541","UMLS:C2931526","MEDGEN:419434"],"termid":"MONDO:0043135","xrefs":{"Monarch":{"xref_id":"0043135"}}}


id: GO:0043054
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Exit from the facultative diapause of the dauer (enduring) larval stage of nematode development.","definition_xrefs":["PMID:12620986","GOC:cab1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"exit from diapause","termid":"GO:0071981"},{"relation_name":"part_of","term_name":"dauer larval development","termid":"GO:0040024"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dauer exit","synonyms":[{"name":"exit from nematode dormancy","type":"exact"}],"termid":"GO:0043054"}


id: PBO:0061260
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"notch 2 N-terminal like C","termid":"PBO:0061260"}


id: GO:0044730
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a bone sialoprotein, an extracellular matrix glycoprotein found on the surface of bones and dentin.","definition_xrefs":["PMID:10642520"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"},{"relation_name":"is_a","term_name":"extracellular matrix binding","termid":"GO:0050840"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"bone sialoprotein binding","secondary_identifiers":["InterPro:IPR008412"],"synonyms":[{"name":"bone sialoprotein II binding","type":"exact"}],"termid":"GO:0044730"}


id: PBO:0089399
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H2A-H2B dimer chaperone Chz1","termid":"PBO:0089399"}


id: MONDO:0020638
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A type of melanoma that typically occurs in light-skinned individuals ranging in age from young adults to the elderly. Risk factors include extensive sun exposure during childhood, a family history of melanoma, and the presence of dysplastic nevi.","definition_xrefs":["NCIT:C9152"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cutaneous melanoma","termid":"MONDO:0005012"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0004992"],"is_obsolete":false,"name":"superficial spreading melanoma","secondary_identifiers":["icd11.foundation:208661037","MEDGEN:87242","ICDO:8743/3","SCTID:254730000","UMLS:C0334438"],"synonyms":[{"name":"SSM","type":"exact"},{"name":"cutaneous superficial spreading melanoma","type":"exact"},{"name":"pagetoid melanoma","type":"exact"},{"name":"superficial spreading cutaneous (skin) melanoma","type":"exact"},{"name":"superficial spreading malignant melanoma of skin","type":"exact"},{"name":"superficial spreading malignant melanoma of the skin","type":"exact"},{"name":"superficial spreading malignant skin melanoma","type":"exact"},{"name":"superficial spreading melanoma","type":"exact"},{"name":"superficial spreading melanoma of skin","type":"exact"},{"name":"superficial spreading melanoma of the skin","type":"exact"}],"termid":"MONDO:0020638","xrefs":{"Monarch":{"xref_id":"0020638"}}}


id: MONDO:0017089
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A megalencephaly (disease) that is not part of a larger syndrome.","definition_xrefs":["MONDO:patterns/isolated"],"direct_ancestors":[{"relation_name":"is_a","term_name":"megalencephaly","termid":"MONDO:0016608"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"isolated megalencephaly","secondary_identifiers":["GARD:20977","Orphanet:268920"],"synonyms":[{"name":"isolated macrencephaly","type":"exact"},{"name":"isolated megalencephaly (disease)","type":"exact"},{"name":"nonsyndromic megalencephaly (disease)","type":"exact"}],"termid":"MONDO:0017089","xrefs":{"Monarch":{"xref_id":"0017089"}}}


id: PBO:0080980
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger and BTB domain containing 14","termid":"PBO:0080980"}


id: PR:P05752
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rps601 gene.","definition_xrefs":["UniProtKB:P05752","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S6-A (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC13G6.07c","synonyms":[{"name":"Spom972h-rps601","type":"exact"}],"termid":"PR:P05752"}


id: GO:0032523
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of silicon from the inside of the cell to the outside of the cell across a membrane.","definition_xrefs":["PMID:17625566","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoatomic cation transmembrane transporter activity","termid":"GO:0008324"},{"relation_name":"is_a","term_name":"efflux transmembrane transporter activity","termid":"GO:0015562"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"silicon efflux transmembrane transporter activity","synonyms":[{"name":"silicon efflux transporter activity","type":"exact"}],"termid":"GO:0032523"}


id: MONDO:0020708
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neurodegenerative condition characterized by asymmetric weakness in the upper extremities resulting from segmental lower motor neuron dysfunction.","definition_xrefs":["NCIT:C133085"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neurodegenerative disease","termid":"MONDO:0005559"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"brachial amyotrophic diplegia","secondary_identifiers":["UMLS:C4522181","MEDGEN:1617621"],"synonyms":[{"name":"BAD","type":"broad"},{"name":"FAS","type":"exact"},{"name":"brachial amyotrophic diplegia","type":"exact"},{"name":"flail arm syndrome","type":"exact"},{"name":"man-in-barrel syndrome","type":"exact"}],"termid":"MONDO:0020708","xrefs":{"Monarch":{"xref_id":"0020708"}}}


id: PBO:0062615
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 10 subfamily V member 3 pseudogene","termid":"PBO:0062615"}


id: SO:0002094
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A genomic region at a non-allelic position where exchange of genetic material happens as a result of homologous recombination.","direct_ancestors":[{"relation_name":"is_a","term_name":"recombination_hotspot","termid":"SO:0000339"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non_allelic_homologous_recombination_region","synonyms":[{"name":"INSDC_feature:misc_recomb","type":"broad"},{"name":"INSDC_qualifier:non_allelic_homologous","type":"exact"},{"name":"INSDC_qualifier:non_allelic_homologous_recombination","type":"exact"},{"name":"NAHRR","type":"exact"},{"name":"non allelic homologous recombination region","type":"exact"}],"termid":"SO:0002094"}


id: PBO:0003426
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U2AF large subunit (U2AF-59)","termid":"PBO:0003426"}


id: PBO:0045416
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"developmental pluripotency associated 5 pseudogene 1","termid":"PBO:0045416"}


id: PBO:0063611
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PFDN1 pseudogene 2","termid":"PBO:0063611"}


id: GO:0034965
data:
  {"annotated_genes":["SJAG_01369","SJAG_03234","SJAG_06613","SJAG_02553"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[91413,105125,113872,115694],"is_not":false,"summary":null,"term":"GO:0034965"}]},"cv_name":"biological_process","definition":"Any process involved in the conversion of a primary box C/D type small nucleolar RNA (snoRNA) transcript that resides within, and is processed from, the intron of a pre-mRNA into a mature box C/D snoRNA.","definition_xrefs":["GOC:krc","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intronic snoRNA processing","termid":"GO:0031070"},{"relation_name":"is_a","term_name":"box C/D sno(s)RNA processing","termid":"GO:0034963"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01369":null,"SJAG_02553":null,"SJAG_03234":null,"SJAG_06613":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0016074"}],"interesting_parent_ids":["GO:0008150","GO:0016074","GO:0010467"],"is_obsolete":false,"name":"intronic box C/D snoRNA processing","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0034965","terms_by_termid":{"GO:0034965":null}}


id: GO:0042810
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving pheromones, a substance that is secreted and released by an organism and detected by a second organism of the same or a closely related species, in which it causes a specific reaction, such as a definite behavioral reaction or a developmental process.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secondary metabolic process","termid":"GO:0019748"},{"relation_name":"is_a","term_name":"hormone metabolic process","termid":"GO:0042445"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"pheromone metabolic process","synonyms":[{"name":"pheromone metabolism","type":"exact"}],"termid":"GO:0042810"}


id: PBO:0043903
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cysteine rich secretory protein 3","termid":"PBO:0043903"}


id: PBO:0087370
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Spt4p/5p (DSIF) transcription elongation factor complex subunit; the Spt4/5 complex binds to ssRNA in a sequence-specific manner, and along with RNAP I and II has multiple roles regulating transcriptional elongation, RNA processing, quality control, and transcription-coupled repair; localizes to kinetochores and heterochromatin, influencing chromosomal dynamics and silencing; required for transcription through long trinucleotide repeats in ORFs and non-protein coding regions","termid":"PBO:0087370"}


id: GO:0062210
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regeneration process by which a damaged or lost shoot regrows or re-differentiates. This process may occur via de-differentiation and subsequent reprogramming of somatic cells or activation of existing undifferentiated (meristematic) cells to produce a new shoot meristem and subsequently a new shoot.","definition_xrefs":["PMID:27143753"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regeneration","termid":"GO:0031099"},{"relation_name":"is_a","term_name":"shoot system development","termid":"GO:0048367"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"shoot regeneration","synonyms":[{"name":"shoot system regeneration","type":"exact"}],"termid":"GO:0062210"}


id: FYPO:0002101
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which an 3'-5' DNA helicase activity is absent.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished catalytic activity","termid":"FYPO:0000664"},{"relation_name":"is_a","term_name":"abnormal 3'-5' DNA helicase activity","termid":"FYPO:0002100"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000652","FYPO:0000707","FYPO:0000661","FYPO:0000654"],"is_obsolete":false,"name":"abolished 3'-5' DNA helicase activity","synonyms":[{"name":"3'-5' DNA helicase activity abolished","type":"exact"}],"termid":"FYPO:0002101"}


id: PBO:0028975
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_nitrite","termid":"PBO:0028975"}


id: PBO:0117010
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ITPRIPL2 antisense RNA 1","termid":"PBO:0117010"}


id: MONDO:1011238
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Microphthalmia that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microphthalmia, non-human animal","termid":"MONDO:1010324"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microphthalmia, dog","secondary_identifiers":["OMIA:000649-9615"],"termid":"MONDO:1011238","xrefs":{"Monarch":{"xref_id":"1011238"}}}


id: GO:0061442
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process involved in cardiac muscle cell fate commitment. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment.","definition_xrefs":["GOC:BHF","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"muscle cell fate determination","termid":"GO:0007521"},{"relation_name":"is_a","term_name":"cardiac cell fate determination","termid":"GO:0060913"},{"relation_name":"part_of","term_name":"cardiac muscle cell fate commitment","termid":"GO:0060923"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac muscle cell fate determination","termid":"GO:0061442"}


id: MONDO:0024349
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A prevalent and benign dermatological condition that predominantly affects children and adolescents. The name \\\"pityriasis alba\\\" derives from its appearance, where \\\"pityriasis\\\" denotes the fine scales and \\\"alba\\\" signifies the pale color (hypopigmentation).","definition_xrefs":["PMID:28613715"],"direct_ancestors":[{"relation_name":"is_a","term_name":"exanthem","termid":"MONDO:0006547"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"pityriasis alba","secondary_identifiers":["icd11.foundation:1386947078","ICD9:696.5","SCTID:402296004","UMLS:C0085657","MEDGEN:39322"],"termid":"MONDO:0024349","xrefs":{"Monarch":{"xref_id":"0024349"}}}


id: PBO:0070089
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 3 pseudogene","termid":"PBO:0070089"}


id: FYPO:0007194
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which a cell contains more mitochondria than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal subcellular component during vegetative growth","termid":"FYPO:0001322"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"mitochondria present in increased numbers","synonyms":[{"name":"extra mitochondria during vegetative growth","type":"exact"},{"name":"increased number of mitochondria during vegetative growth","type":"exact"},{"name":"mitochondria present in increased numbers during mitotic cell cycle","type":"related"},{"name":"mitochondria present in increased numbers during vegetative growth","type":"exact"}],"termid":"FYPO:0007194"}


id: SO:0000504
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one D-gene, one DJ-gene and one C-gene.","direct_ancestors":[{"relation_name":"has_part","term_name":"D_gene_segment","termid":"SO:0000458"},{"relation_name":"has_part","term_name":"C_gene_segment","termid":"SO:0000478"},{"relation_name":"has_part","term_name":"DJ_gene_segment","termid":"SO:0000572"},{"relation_name":"is_a","term_name":"vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster","termid":"SO:0000938"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"D_DJ_C_cluster","synonyms":[{"name":"D DJ C cluster","type":"exact"},{"name":"D-(DJ)-C-CLUSTER","type":"exact"}],"termid":"SO:0000504"}


id: MONDO:0016686
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A low-grade (WHO grade II) astrocytic neoplasm. It is characterized by diffuse infiltration of neighboring central nervous system structures. These lesions typically affect young adults and have a tendency for progression to anaplastic astrocytoma and glioblastoma. Based on the IDH genes mutation status, diffuse astrocytomas are classified as IDH-mutant, IDH-wildtype, and not otherwise specified.","definition_xrefs":["NCIT:C7173"],"direct_ancestors":[{"relation_name":"is_a","term_name":"low-grade astrocytoma","termid":"MONDO:0016685"},{"relation_name":"is_a","term_name":"grade II glioma","termid":"MONDO:0021639"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diffuse astrocytoma","secondary_identifiers":["ONCOTREE:DASTR","UMLS:C0280785","MEDGEN:83708","GARD:5907","NANDO:2200085","Orphanet:251595","DOID:4857"],"synonyms":[{"name":"WHO grade II astrocytoma","type":"exact"},{"name":"astrocytoma, diffuse","type":"exact"},{"name":"astrocytoma, diffuse, malignant","type":"exact"},{"name":"diffuse astrocytoma","type":"exact"},{"name":"fibrillary astrocytoma (histologic variant)","type":"related"},{"name":"gemistocytic astrocytoma (histologic variant)","type":"related"},{"name":"grade II astrocytic neoplasm","type":"exact"},{"name":"grade II astrocytic tumor","type":"exact"},{"name":"grade II astrocytic tumour","type":"exact"},{"name":"grade II astrocytoma","type":"exact"},{"name":"low-grade diffuse astrocytoma","type":"related"},{"name":"protoplasmic astrocytoma (histologic variant)","type":"related"}],"termid":"MONDO:0016686","xrefs":{"Monarch":{"xref_id":"0016686"}}}


id: PBO:0035726
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_histone_H3-K9_methylation_at_subtelomere_during_vegetative_growth","termid":"PBO:0035726"}


id: GO:1905062
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cardioblast proliferation.","definition_xrefs":["GOC:bc","GOC:BHF","PMID:24236097","GOC:BHF_miRNA","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cardioblast proliferation","termid":"GO:0003264"},{"relation_name":"is_a","term_name":"positive regulation of cell proliferation involved in heart morphogenesis","termid":"GO:2000138"},{"relation_name":"positively_regulates","term_name":"cardioblast proliferation","termid":"GO:0003263"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cardioblast proliferation","synonyms":[{"name":"activation of cardioblast proliferation","type":"narrow"},{"name":"up regulation of cardioblast proliferation","type":"exact"},{"name":"up-regulation of cardioblast proliferation","type":"exact"},{"name":"upregulation of cardioblast proliferation","type":"exact"}],"termid":"GO:1905062"}


id: GO:0016319
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the mushroom body over time, from its formation to the mature structure. The mushroom body is composed of the prominent neuropil structures of the insect central brain, thought to be crucial for olfactory associated learning. These consist mainly of a bulbous calyx and tightly packaged arrays of thin parallel fibers of the Kenyon cells.","definition_xrefs":["PMID:8790424"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"brain development","termid":"GO:0007420"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mushroom body development","termid":"GO:0016319"}


id: PBO:0003844
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Blt1","termid":"PBO:0003844"}


id: PBO:0090446
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exopolyphosphatase, prune Ppx1","termid":"PBO:0090446"}


id: GO:0046694
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the use of stored sperm from the first-mating male is inhibited by the seminal fluid of subsequently mating males.","definition_xrefs":["PMID:10440373"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sperm competition","termid":"GO:0046692"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sperm incapacitation","termid":"GO:0046694"}


id: PBO:0057661
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1253","termid":"PBO:0057661"}


id: PBO:0001890
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycosylceramide biosynthesis protein (predicted)","termid":"PBO:0001890"}


id: GO:0120254
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving an olefinic compound, any compound which contains a carbon-carbon double bond (aka C=C).","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic process","termid":"GO:0008152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"olefinic compound metabolic process","synonyms":[{"name":"alkene substituted compound metabolic process","type":"exact"},{"name":"alkene substituted compound metabolism","type":"exact"}],"termid":"GO:0120254"}


id: GO:0050852
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by the cross-linking of an antigen receptor on a T cell.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antigen receptor-mediated signaling pathway","termid":"GO:0050851"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"T cell receptor signaling pathway","secondary_identifiers":["Reactome:R-HSA-202403"],"synonyms":[{"name":"T lymphocyte receptor signaling pathway","type":"exact"},{"name":"T lymphocyte receptor signalling pathway","type":"exact"},{"name":"T-cell receptor signaling pathway","type":"exact"},{"name":"T-cell receptor signalling pathway","type":"exact"},{"name":"T-lymphocyte receptor signaling pathway","type":"exact"},{"name":"T-lymphocyte receptor signalling pathway","type":"exact"},{"name":"TCR signaling pathway","type":"exact"}],"termid":"GO:0050852"}


id: PBO:0024829
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements human CLN3","termid":"PBO:0024829"}


id: PBO:0002690
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PvGal biosynthesis protein Pvg5","termid":"PBO:0002690"}


id: MONDO:0020426
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Malposition of the coronary ostium is a rare coronary artery congenital malformation characterized by displacement of one of the coronary arteries, originating closer to the aortic root or to the commissural area. The anomaly is considered to be asymptomatic, however, it may impose surgical difficulties during aortic root surgery.","definition_xrefs":["Orphanet:99090"],"direct_ancestors":[{"relation_name":"is_a","term_name":"coronary artery congenital malformation","termid":"MONDO:0015203"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"malposition of the coronary ostium","secondary_identifiers":["MEDGEN:759190","UMLS:C3532077","GARD:19645"],"termid":"MONDO:0020426","xrefs":{"Monarch":{"xref_id":"0020426"}}}


id: PBO:0065198
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre-mRNA processing factor 19","termid":"PBO:0065198"}


id: PBO:0049231
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamate metabotropic receptor 4","termid":"PBO:0049231"}


id: GO:0032626
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of interleukin-22 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine production","termid":"GO:0001816"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"interleukin-22 production","secondary_identifiers":["GO:0072620","GO:0042239"],"synonyms":[{"name":"IL-22 production","type":"exact"},{"name":"IL22 production","type":"exact"},{"name":"ILTIF production","type":"exact"},{"name":"ZCYTO18 production","type":"narrow"},{"name":"interleukin-22 biosynthetic process","type":"narrow"},{"name":"interleukin-22 secretion","type":"narrow"}],"termid":"GO:0032626"}


id: PBO:0084265
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Integral membrane component of ER-derived COPII-coated vesicles; functions in ER to Golgi transport; EMP46 has a paralog, EMP47, that arose from the whole genome duplication","termid":"PBO:0084265"}


id: PBO:0064391
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PMS1 homolog 2, mismatch repair system component pseudogene 13","termid":"PBO:0064391"}


id: GO:0102591
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: delphinidin 3-O-rutinoside-7-O-glucoside + 1-O-4-hydroxybenzoyl-beta-D-glucose = delphinidin 3-O-rutinoside-7-O-(6-O-(p-hydroxybenzoyl)-glucoside) + beta-D-glucose.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete delphinidin 7-O-glucoside acyltransferase (acyl-glucose dependent) activity (obsolete GO:0102591)","termid":"GO:0102591"}


id: MONDO:0004601
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Ulcer of lower limbs is a chronic ulcer of skin where the ulcer is not a decubitus ulcer.","definition_xrefs":["DOID:8529"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chronic ulcer of skin","termid":"MONDO:0004605"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"ulcer of lower limbs","secondary_identifiers":["UMLS:C0023223","MEDGEN:9701","ICD9:707.13","SCTID:419193008"],"synonyms":[{"name":"Ulcer of ankle","type":"narrow"},{"name":"Ulcer of calf","type":"narrow"},{"name":"Ulcer of heel and midfoot","type":"narrow"},{"name":"Ulcer of thigh","type":"narrow"}],"termid":"MONDO:0004601","xrefs":{"Monarch":{"xref_id":"0004601"}}}


id: FYECO:0000046
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which margaric acid was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"+ fatty acid","termid":"FYECO:0000042"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ margaric acid","termid":"FYECO:0000046"}


id: FYPO:0008154
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to centromeric heterochromatin is normal (i.e. indistinguishable from wild type.","direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to centromeric chromatin","termid":"FYPO:0005072"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000138","FYPO:0000257","FYPO:0001320","FYPO:0001312"],"is_obsolete":false,"name":"normal protein localization to centromeric heterochromatin","termid":"FYPO:0008154"}


id: GO:0036337
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by the binding of a ligand to a Fas receptor on the surface of the cell, and ending with the regulation of a downstream cellular process, e.g. transcription. Fas is a death domain-containing member of the tumor necrosis factor receptor (TNFR) superfamily.","definition_xrefs":["GOC:nhn","PMID:12040174","Wikipedia:Fas_receptor"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell surface receptor signaling pathway","termid":"GO:0007166"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"Fas signaling pathway","synonyms":[{"name":"Apo-1 signaling pathway","type":"exact"},{"name":"CD95 signaling pathway","type":"exact"},{"name":"FAS ligand-Fas signaling pathway","type":"narrow"},{"name":"Fas receptor signaling pathway","type":"exact"},{"name":"Fas-FasL signaling pathway","type":"narrow"},{"name":"FasL signaling pathway","type":"related"},{"name":"FasR signaling pathway","type":"exact"}],"termid":"GO:0036337"}


id: GO:0023055
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which a signal is initiated by a peptide hormone.","definition_xrefs":["GOC:mtg_signal"],"gene_count":0,"genotype_count":0,"name":"obsolete signal initiation by peptide hormone (obsolete GO:0023055)","synonyms":[{"name":"signal initiation by peptide hormone","type":"exact"}],"termid":"GO:0023055"}


id: GO:0001186
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. The function of binding to an RNA polymerase I (RNAP I) transcription regulator and recruiting it to the general transcription machinery complex in order to modulate transcription initiation.","definition_xrefs":["PMID:14969726","PMID:12381659","PMID:8057832","GOC:txnOH-2018"],"gene_count":0,"genotype_count":0,"name":"obsolete RNA polymerase I transcription regulator recruiting activity (obsolete GO:0001186)","synonyms":[{"name":"RNA polymerase I transcription factor recruiting activity","type":"exact"},{"name":"RNA polymerase I transcription factor recruiting transcription factor activity","type":"exact"},{"name":"transcription factor activity, RNA polymerase I transcription factor recruiting","type":"related"}],"termid":"GO:0001186"}


id: PBO:0044600
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DDB1 and CUL4 associated factor 8","termid":"PBO:0044600"}


id: MOD:01477
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-phenylalanine residue to an 3'-fluoro-L-fluorophenylalanine.","definition_xrefs":["PubMed:8172898","PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monofluorinated L-phenylalanine","termid":"MOD:01227"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3'-fluoro-L-phenylalanine","synonyms":[{"name":"3-fluorophenylalanine","type":"exact"},{"name":"m-fluorophenylalanine","type":"exact"},{"name":"meta-fluorophenylalanine","type":"exact"}],"termid":"MOD:01477"}


id: PBO:0040717
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BAF chromatin remodeling complex subunit BCL7C","termid":"PBO:0040717"}


id: FYPO:0004113
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce an inviable cell that does not divide, and that is smaller than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable small vegetative cell","termid":"FYPO:0000951"},{"relation_name":"is_a","term_name":"inviable after spore germination, without cell division","termid":"FYPO:0001991"},{"relation_name":"is_a","term_name":"inviable vegetative cell with abnormal cell morphology","termid":"FYPO:0002273"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000004","FYPO:0001985","FYPO:0001320","FYPO:0000005"],"is_obsolete":false,"name":"inviable after spore germination, without cell division, small cell","synonyms":[{"name":"inviable after spore germination, undivided small cell","type":"exact"},{"name":"inviable following spore germination, without cell division, small cell","type":"exact"},{"name":"inviable germinated spore, without cell division, small cell","type":"exact"},{"name":"lethal after spore germination, without cell division, small cell","type":"exact"}],"termid":"FYPO:0004113"}


id: GO:0017092
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the cleavage, within the membrane-spanning helix, of the amino-terminal half (the intermediate form) of sterol regulatory element binding protein (SREBP). This activity releases the transcription factor domain of SREBP from the membrane, freeing it to enter the nucleus.","definition_xrefs":["PMID:12923525","GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete sterol regulatory element-binding protein site 2 protease activity (obsolete GO:0017092)","synonyms":[{"name":"SREBP site 2 protease activity","type":"exact"},{"name":"sterol regulatory element-binding protein site 2 protease activity","type":"exact"}],"termid":"GO:0017092"}


id: PBO:0064801
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PPP1CB divergent transcript","termid":"PBO:0064801"}


id: MONDO:0001122
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Inflammation of the maxillary sinus that typically lasts beyond eight weeks. It is caused by infections, allergies, and the presence of sinus polyps or a deviated septum. Signs and symptoms include headache, nasal discharge, swelling in the face, dizziness, and breathing difficulties.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maxillary sinusitis","termid":"MONDO:0005842"},{"relation_name":"is_a","term_name":"chronic rhinosinusitis","termid":"MONDO:0006031"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chronic maxillary sinusitis","secondary_identifiers":["icd11.foundation:1372580647","UMLS:C0008698","DOID:10792","SCTID:35923002","ICD10CM:J32.0","ICD9:473.0","MEDGEN:966","NCIT:C34477"],"synonyms":[{"name":"chronic antritis","type":"exact"},{"name":"maxillary sinusitis, chronic","type":"exact"}],"termid":"MONDO:0001122","xrefs":{"Monarch":{"xref_id":"0001122"}}}


id: PR:C6Y4B4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC23H4.21 gene.","definition_xrefs":["UniProtKB:C6Y4B4","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C23H4.21 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC23H4.21","synonyms":[{"name":"Spom972h-SPAC23H4.21","type":"exact"}],"termid":"PR:C6Y4B4"}


id: PBO:0055601
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3037","termid":"PBO:0055601"}


id: PBO:0057277
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 499b","termid":"PBO:0057277"}


id: GO:1990928
data:
  {"annotated_genes":["SJAG_02973","SJAG_01184","SJAG_04873","SJAG_00209","SJAG_02026","SJAG_02424","SJAG_00169"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[74398,72014,72818,95012,95558,73939,76233],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034198"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of amino acids.","definition_xrefs":["PMID:7765311"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to starvation","termid":"GO:0042594"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00169":null,"SJAG_00209":null,"SJAG_01184":null,"SJAG_02026":null,"SJAG_02424":null,"SJAG_02973":null,"SJAG_04873":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to amino acid starvation","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:1990928","terms_by_termid":{"GO:0034198":null}}


id: PBO:0044219
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytosolic thiouridylase subunit 2","termid":"PBO:0044219"}


id: GO:0015189
data:
  {"annotated_genes":["SJAG_03256","SJAG_02029","SJAG_04637","SJAG_03400","SJAG_04725"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[79449,97688,100700,103147,110401],"is_not":false,"summary":null,"term":"GO:0015189"}]},"cv_name":"molecular_function","definition":"Enables the transfer of L-lysine from one side of a membrane to the other. L-lysine is 2,6-diaminohexanoic acid.","definition_xrefs":["GOC:mtg_transport","GOC:ai","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic cation transmembrane transporter activity","termid":"GO:0015101"},{"relation_name":"is_a","term_name":"basic amino acid transmembrane transporter activity","termid":"GO:0015174"},{"relation_name":"is_a","term_name":"L-amino acid transmembrane transporter activity","termid":"GO:0015179"}],"gene_count":5,"genes_by_uniquename":{"SJAG_02029":null,"SJAG_03256":null,"SJAG_03400":null,"SJAG_04637":null,"SJAG_04725":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"L-lysine transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0005293"],"synonyms":[{"name":"L-lysine permease","type":"related"},{"name":"histidine/arginine/lysine/ornithine porter activity","type":"narrow"},{"name":"lysine permease activity","type":"related"}],"termid":"GO:0015189","terms_by_termid":{"GO:0015189":null}}


id: GO:1900020
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein kinase C activity.","definition_xrefs":["GOC:TermGenie","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein serine/threonine kinase activity","termid":"GO:0071902"},{"relation_name":"is_a","term_name":"regulation of protein kinase C activity","termid":"GO:1900019"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of protein kinase C activity","synonyms":[{"name":"positive regulation of PKC","type":"related"},{"name":"positive regulation of PKC activity","type":"exact"},{"name":"up regulation of PKC","type":"related"},{"name":"up regulation of PKC activity","type":"exact"}],"termid":"GO:1900020"}


id: PBO:0074562
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA host gene 16","termid":"PBO:0074562"}


id: FYPO:0007612
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription from a promoter that contains one or more STREP motifs occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased transcription during vegetative growth","termid":"FYPO:0000780"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0006551","FYPO:0000294","FYPO:0001985"],"is_obsolete":false,"name":"increased transcription from STREP promoter","synonyms":[{"name":"decreased transcription from STREP promoter during mitotic cell cycle","type":"related"},{"name":"decreased transcription from STREP promoter during vegetative growth","type":"exact"},{"name":"reduced transcription from STREP promoter","type":"exact"}],"termid":"FYPO:0007612"}


id: PR:O74520
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- trp663 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74520"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized membrane protein C663.14c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC663.14c","synonyms":[{"name":"Spom972h-trp663","type":"exact"}],"termid":"PR:O74520"}


id: FYPO:0002333
data:
  {"alleles_by_uniquename":{"SJAG_01050:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01050","name":"nur1delta","uniquename":"SJAG_01050:allele-1"},"SJAG_01143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01143","name":"mid1delta","uniquename":"SJAG_01143:allele-1"},"SJAG_01143:allele-2":{"allele_type":"partial_amino_acid_deletion","description":"711-723","gene_uniquename":"SJAG_01143","name":"mid1-delta(711-723 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cell phenotype that affects the localization of a protein in a cell.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"localization phenotype","termid":"FYPO:0000138"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00030":null,"SJAG_01050":null,"SJAG_01143":null,"SJAG_01665":null,"SJAG_01745":null,"SJAG_01794":null,"SJAG_02392":null,"SJAG_03250":null,"SJAG_03581":null,"SJAG_03596":null,"SJAG_03703":null,"SJAG_03783":null,"SJAG_03892":null,"SJAG_04280":null,"SJAG_04349":null,"SJAG_04489":null,"SJAG_04498":null,"SJAG_04522":null,"SJAG_04912":null,"SJAG_05207":null},"genotype_count":19,"genotypes_by_uniquename":{"Vps4-EQ-E233Q-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"Vps4-EQ(E233Q aa)","display_uniquename":"Vps4-EQ-E233Q-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-2","expression":"Not assayed or wild 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vps4delta","display_uniquename":"nur1delta__vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01050:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]},"pom1delta":{"display_name":"pom1delta","display_uniquename":"pom1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02392:allele-1","expression":"Null"}]}]},"sst4delta":{"display_name":"sst4delta","display_uniquename":"sst4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03250:allele-1","expression":"Null"}]}]},"vps24delta":{"display_name":"vps24delta","display_uniquename":"vps24delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03783:allele-1","expression":"Null"}]}]},"vps25delta":{"display_name":"vps25delta","display_uniquename":"vps25delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04912:allele-1","expression":"Null"}]}]},"vps28delta":{"display_name":"vps28delta","display_uniquename":"vps28delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04349:allele-1","expression":"Null"}]}]},"vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"vps4-ts(I307T L327S aa)","display_uniquename":"vps4-ts-I307T_L327S-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-3","expression":"Not assayed or wild type"}]}]},"vps4delta":{"display_name":"vps4delta","display_uniquename":"vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]},"wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"wee1-as8(T582G aa)","display_uniquename":"wee1-as8-T582G-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04280:allele-1","expression":"Not assayed or wild 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phenotype","type":"exact"}],"termid":"FYPO:0002333","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000137":null,"FYECO:0000338":null,"FYPO:0000644":null,"FYPO:0000731":null,"FYPO:0001132":null,"FYPO:0001370":null,"FYPO:0001375":null,"FYPO:0001440":null,"FYPO:0002870":null,"FYPO:0003657":null,"FYPO:0003946":null,"FYPO:0004718":null,"FYPO:0005503":null,"FYPO:0007073":null,"FYPO:0007177":null,"FYPO:0007771":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null,"GO:0000815":null}}


id: GO:0097695
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a protein-containing macromolecular complex to a specific location in the telomeric region of a chromosome.","definition_xrefs":["GOC:BHF_telomere","GOC:rph","PMID:26586433","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex localization","termid":"GO:0031503"},{"relation_name":"is_a","term_name":"establishment of localization","termid":"GO:0051234"},{"relation_name":"part_of","term_name":"cellular macromolecule localization","termid":"GO:0070727"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"establishment of protein-containing complex localization to telomere","synonyms":[{"name":"establishment of macromolecular complex localisation to telomere","type":"exact"},{"name":"establishment of macromolecular complex localization to telomere","type":"related"}],"termid":"GO:0097695"}


id: MONDO:0000408
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A group of disorders caused by a prenatal exposure to maternal consumption of alcohol leading to a range of behavioral, cognitive and neurological deficits in the offspring. It is characterized by physical growth problems, distinct facies, and varying psycho-neurological issues.","definition_xrefs":["NCIT:C92780"],"direct_ancestors":[{"relation_name":"is_a","term_name":"specific developmental disorder","termid":"MONDO:0000592"},{"relation_name":"is_a","term_name":"alcohol-induced mental disorder","termid":"MONDO:0002326"},{"relation_name":"is_a","term_name":"alcohol-induced disorders","termid":"MONDO:0021699"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fetal alcohol spectrum disorder","secondary_identifiers":["MEDGEN:457516","DOID:0050696","UMLS:C2985290","SCTID:609437000","MESH:D063647"],"synonyms":[{"name":"FAE (fetal alcohol effects)","type":"related"},{"name":"FAEs (fetal alcohol effects)","type":"related"},{"name":"FASD","type":"related"},{"name":"FASDs","type":"related"},{"name":"alcohol related birth defects","type":"related"},{"name":"alcohol related neurodevelopmental disorder","type":"related"},{"name":"alcohol-related birth defects","type":"related"},{"name":"alcohol-related birth defects (ARBD) - type","type":"related"},{"name":"alcohol-related neurodevelopmental disorder (ARND) - type","type":"related"},{"name":"birth defects, alcohol-related","type":"related"},{"name":"fetal alcohol spectrum disorders","type":"exact"},{"name":"fetal alcohol syndrome","type":"related"},{"name":"fetal alcohol syndrome (FAS) - type","type":"related"},{"name":"foetal alcohol spectrum disorders","type":"exact"},{"name":"foetal alcohol syndrome","type":"related"},{"name":"foetal alcohol syndrome (FAS) - type","type":"related"},{"name":"growth retardation, facial abnormalities, and central nervous system dysfunction","type":"related"},{"name":"partial fetal alcohol syndrome","type":"related"},{"name":"partial foetal alcohol syndrome","type":"related"},{"name":"syndrome, fetal alcohol","type":"related"},{"name":"syndrome, foetal alcohol","type":"related"}],"termid":"MONDO:0000408","xrefs":{"Monarch":{"xref_id":"0000408"}}}


id: GO:0036248
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of phytochelatin 4 (PC4) into the vacuole. Phytochelatin 4 is a glutathione-related peptide composed of (gamma-Glu-Cys)n-Gly where n=4, and where the Glu and Cys residues are linked through a gamma-carboxylamide bond.","definition_xrefs":["PMID:19001374","GOC:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oligopeptide transmembrane transport","termid":"GO:0035672"},{"relation_name":"is_a","term_name":"phytochelatin import into vacuole","termid":"GO:0071995"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179","GO:0055085"],"is_obsolete":false,"name":"phytochelatin 4 import into vacuole","synonyms":[{"name":"PC4 import into vacuole","type":"exact"}],"termid":"GO:0036248"}


id: PBO:0072752
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S100A11 pseudogene 2","termid":"PBO:0072752"}


id: GO:0035956
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of the breakdown of starch, by modulating the frequency, rate or extent of transcription from an RNA polymerase II promoter.","definition_xrefs":["GOC:dgf","PMID:9342405"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of starch catabolic process by regulation of transcription from RNA polymerase II promoter (obsolete GO:0035956)","synonyms":[{"name":"regulation of starch breakdown by regulation of transcription from Pol II promoter","type":"exact"},{"name":"regulation of starch breakdown by regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of starch catabolic process by regulation of transcription from Pol II promoter","type":"exact"},{"name":"regulation of starch catabolism by regulation of transcription from Pol II promoter","type":"exact"},{"name":"regulation of starch catabolism by regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of starch degradation by regulation of transcription from Pol II promoter","type":"exact"},{"name":"regulation of starch degradation by regulation of transcription from RNA polymerase II promoter","type":"related"}],"termid":"GO:0035956"}


id: MONDO:0014124
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Adams-Oliver syndrome in which the cause of the disease is a mutation in the EOGT gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Adams-Oliver syndrome","termid":"MONDO:0007034"},{"relation_name":"is_a","term_name":"non-syndromic limb reduction defect","termid":"MONDO:0019713"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"Adams-Oliver syndrome 4","secondary_identifiers":["OMIM:615297","MEDGEN:815422","GARD:15941","UMLS:C3809092"],"synonyms":[{"name":"AOS4","type":"related"},{"name":"Adams-Oliver syndrome 4","type":"exact"},{"name":"Adams-Oliver syndrome caused by mutation in EOGT","type":"exact"},{"name":"Adams-Oliver syndrome type 4","type":"exact"},{"name":"EOGT Adams-Oliver syndrome","type":"exact"}],"termid":"MONDO:0014124","xrefs":{"Monarch":{"xref_id":"0014124"}}}


id: PBO:0075366
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SOX5 antisense RNA 1","termid":"PBO:0075366"}


id: PBO:0052835
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 1-5","termid":"PBO:0052835"}


id: SO:0001142
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The peptide twists in an anticlockwise, left handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, -90 degrees psi +120 degrees < +40 degrees, residue(i+1): -140 degrees < phi < -20 degrees, -90 < psi < +40 degrees.","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"serine_threonine_turn","termid":"SO:0001141"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"st_turn_left_handed_type_one","secondary_identifiers":["BS:00234"],"synonyms":[{"name":"st turn left handed type one","type":"exact"},{"name":"st_turn_il","type":"exact"}],"termid":"SO:0001142"}


id: PBO:0119978
data:
  {"annotated_genes":["SJAG_MIT09","SJAG_MIT15","SJAG_MIT37"],"annotation_feature_type":"gene","cv_annotations":{"EC numbers":[{"annotations":[56258,56266,56290],"is_not":false,"summary":null,"term":"PBO:0119978"}]},"cv_name":"EC numbers","gene_count":3,"genes_by_uniquename":{"SJAG_MIT09":null,"SJAG_MIT15":null,"SJAG_MIT37":null},"genotype_count":0,"is_obsolete":false,"name":"3.6.1.34","termid":"PBO:0119978","terms_by_termid":{"PBO:0119978":null}}


id: GO:0009093
data:
  {"annotated_genes":["SJAG_03671"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[114319],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019450"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of cysteine, 2-amino-3-mercaptopropanoic acid.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur amino acid catabolic process","termid":"GO:0000098"},{"relation_name":"is_a","term_name":"cysteine metabolic process","termid":"GO:0006534"},{"relation_name":"is_a","term_name":"alpha-amino acid catabolic process","termid":"GO:1901606"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03671":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0006520","GO:0044281","GO:0006790","GO:0008150"],"is_obsolete":false,"name":"cysteine catabolic process","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["Wikipedia:Cysteine"],"synonyms":[{"name":"cysteine breakdown","type":"exact"},{"name":"cysteine catabolism","type":"exact"},{"name":"cysteine degradation","type":"exact"}],"termid":"GO:0009093","terms_by_termid":{"GO:0019450":null}}


id: GO:0006755
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete carbamoyl phosphate-ADP transphosphorylation (obsolete GO:0006755)","synonyms":[{"name":"carbamoyl phosphate-ADP transphosphorylation","type":"exact"}],"termid":"GO:0006755"}


id: MONDO:0007965
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"familial melanoma","termid":"MONDO:0018961"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"melanoma, malignant familial intraocular","secondary_identifiers":["MESH:C563596","MEDGEN:322559","GARD:18576","OMIM:155700","UMLS:C1835043"],"synonyms":[{"name":"melanoma, malignant familial intraocular","type":"exact"}],"termid":"MONDO:0007965","xrefs":{"Monarch":{"xref_id":"0007965"}}}


id: PBO:0012834
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complented by H. sapiens HRAS","termid":"PBO:0012834"}


id: MONDO:0006334
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete ovarian embryonal carcinoma (obsolete MONDO:0006334)","termid":"MONDO:0006334","xrefs":{"Monarch":{"xref_id":"0006334"}}}


id: FYPO:0007155
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cell cycle checkpoint phenotype in which the mitotic spindle assembly checkpoint is activated at an abnormal location. The mitotic spindle assembly checkpoint is normally activated at kinetochores, and delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and chromosomes are attached to the spindle.","definition_xrefs":["PomBase:vw","PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete ectopic activation of mitotic cell cycle spindle assembly checkpoint (obsolete FYPO:0007155)","synonyms":[{"name":"ectopic mitotic cell cycle spindle assembly checkpoint activation","type":"exact"}],"termid":"FYPO:0007155"}


id: MONDO:0002456
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete cervix carcinoma (obsolete MONDO:0002456)","termid":"MONDO:0002456","xrefs":{"Monarch":{"xref_id":"0002456"}}}


id: GO:0052420
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways performed by an organism involving xylan within the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete metabolism by host of symbiont xylan (obsolete GO:0052420)","termid":"GO:0052420"}


id: FYPO:0005183
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the polyubiquitination of one or more specific proteins, or of specific protein sites, does not occur when the cell is exposed to ultraviolet light.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein polyubiquitination during vegetative growth","termid":"FYPO:0005928"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"}],"interesting_parent_ids":["FYPO:0002274","FYPO:0001320","FYPO:0005447","FYPO:0002494","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abolished protein polyubiquitination during cellular response to UV","synonyms":[{"name":"abolished protein polyubiquitination during cellular response to UV during mitotic cell cycle","type":"related"},{"name":"abolished protein polyubiquitination during cellular response to UV during vegetative growth","type":"exact"},{"name":"abolished protein polyubiquitination during cellular response to ultraviolet light","type":"exact"},{"name":"abolished protein polyubiquitinylation during cellular response to UV","type":"related"},{"name":"abolished protein polyubiquitylation during cellular response to UV","type":"exact"},{"name":"protein polyubiquitination abolished during cellular response to UV","type":"exact"}],"termid":"FYPO:0005183"}


id: GO:1990450
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a linear polymer of ubiquitin. Linear ubiquitin polymers are formed by linking the amino-terminal methionine (M1) of one ubiquitin molecule to the carboxy-terminal glycine (G76) of the next.","definition_xrefs":["GOC:bf","PMID:23453807","GOC:PARL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ubiquitin binding","termid":"GO:0043130"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"linear polyubiquitin binding","synonyms":[{"name":"M1-linked ubiquitin chain binding","type":"exact"}],"termid":"GO:1990450"}


id: GO:0015729
data:
  {"annotated_genes":["SJAG_00671"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[88734],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990555"}]},"cv_name":"biological_process","definition":"The directed movement of oxaloacetate, the anion of oxobutanedioic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C4-dicarboxylate transport","termid":"GO:0015740"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00671":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"oxaloacetate transport","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0015729","terms_by_termid":{"GO:1990555":null}}


id: MONDO:1011868
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system disorder, non-human animal","termid":"MONDO:1011336"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"motor neuron disease, non-human animal","secondary_identifiers":["OMIA:001165"],"termid":"MONDO:1011868","xrefs":{"Monarch":{"xref_id":"1011868"}}}


id: PBO:0052575
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KMT5A pseudogene 3","termid":"PBO:0052575"}


id: GO:0019220
data:
  {"annotated_genes":["SJAG_04422","SJAG_00685","SJAG_03170","SJAG_01402","SJAG_00053","SJAG_01906","SJAG_02785","SJAG_05314","SJAG_03940","SJAG_02613","SJAG_01187","SJAG_02380"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90736,104722],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902647"},{"annotations":[73415,76373],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045820"},{"annotations":[115870,111749],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:2001211"},{"annotations":[118401],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905707"},{"annotations":[113131,110100],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071072"},{"annotations":[117924],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902648"},{"annotations":[90017],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905857"},{"annotations":[70459],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006110"},{"annotations":[76372],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043456"},{"annotations":[75467],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010510"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphates.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of phosphorus metabolic process","termid":"GO:0051174"},{"relation_name":"regulates","term_name":"phosphate-containing compound metabolic process","termid":"GO:0006796"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00053":null,"SJAG_00685":null,"SJAG_01187":null,"SJAG_01402":null,"SJAG_01906":null,"SJAG_02380":null,"SJAG_02613":null,"SJAG_02785":null,"SJAG_03170":null,"SJAG_03940":null,"SJAG_04422":null,"SJAG_05314":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of phosphate metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"regulation of phosphate metabolism","type":"exact"}],"termid":"GO:0019220","terms_by_termid":{"GO:0006110":null,"GO:0010510":null,"GO:0043456":null,"GO:0045820":null,"GO:0071072":null,"GO:1902647":null,"GO:1902648":null,"GO:1905707":null,"GO:1905857":null,"GO:2001211":null}}


id: GO:0102156
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2,5-dihydroxybenzoate + UDP-alpha-D-glucose = 2,5-dihydroxybenzoate 5-O-beta-D-glucoside + UDP + H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 2,5-DHBA UDP-glucosyltransferase activity (obsolete GO:0102156)","termid":"GO:0102156"}


id: MONDO:0017419
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A congenital malformation characterized by the complete absence of all limbs.","definition_xrefs":["NCIT:C34370"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dysostosis","termid":"MONDO:0018234"},{"relation_name":"is_a","term_name":"non-syndromic limb reduction defect","termid":"MONDO:0019713"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"non-syndromic amelia","secondary_identifiers":["HP:0009827","MEDGEN:8014","UMLS:C0002447","MedDRA:10001926","GARD:21179","Orphanet:294925","SCTID:62588002"],"synonyms":[{"name":"amelia","type":"broad"},{"name":"isolated amelia","type":"related"},{"name":"nonsyndromic amelia","type":"exact"}],"termid":"MONDO:0017419","xrefs":{"Monarch":{"xref_id":"0017419"}}}


id: PBO:0083391
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps ORF AIM9/YER080W","termid":"PBO:0083391"}


id: PBO:0074343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 2","termid":"PBO:0074343"}


id: GO:0060392
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency or extent of the SMAD protein signaling pathway.","definition_xrefs":["GOC:tb","GOC:dph","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of SMAD protein signal transduction","termid":"GO:0060390"},{"relation_name":"is_a","term_name":"negative regulation of transmembrane receptor protein serine/threonine kinase signaling pathway","termid":"GO:0090101"},{"relation_name":"is_a","term_name":"negative regulation of intracellular signal transduction","termid":"GO:1902532"},{"relation_name":"negatively_regulates","term_name":"SMAD protein signal transduction","termid":"GO:0060395"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of SMAD protein signal transduction","synonyms":[{"name":"negative regulation of SMAD protein import into nucleus","type":"narrow"},{"name":"negative regulation of SMAD protein nuclear translocation","type":"narrow"}],"termid":"GO:0060392"}


id: PBO:0048881
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"golgin A6 family member G, pseudogene","termid":"PBO:0048881"}


id: PBO:0074766
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 2","termid":"PBO:0074766"}


id: PBO:0113104
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA polymerase eta (pol eta); involved in translesion synthesis during post-replication repair; catalyzes synthesis of DNA opposite cyclobutane pyrimidine dimers and other lesions; involved in formation of post-replicative damage-induced genome-wide cohesion; may also have role in protection against mitochondrial mutagenesis; may possibly be involved in meiosis; mutations in human pol eta are responsible for XPV","termid":"PBO:0113104"}


id: PBO:0072053
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S10 pseudogene 23","termid":"PBO:0072053"}


id: GO:0044580
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions a resulting in the resulting in the breakdown of butyryl-CoA.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid catabolic process","termid":"GO:0009062"},{"relation_name":"is_a","term_name":"fatty-acyl-CoA catabolic process","termid":"GO:0036115"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150","GO:0006790","GO:0006629"],"is_obsolete":false,"name":"butyryl-CoA catabolic process","synonyms":[{"name":"butyryl-CoA catabolism","type":"exact"}],"termid":"GO:0044580"}


id: PBO:0068900
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 142, pseudogene","termid":"PBO:0068900"}


id: PBO:0068931
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 174, pseudogene","termid":"PBO:0068931"}


id: PBO:0071454
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L31 pseudogene 60","termid":"PBO:0071454"}


id: MONDO:0002035
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An extranodal lymphoma that arises from the colon. The majority are B-cell non-Hodgkin lymphomas.","definition_xrefs":["NCIT:C4793"],"direct_ancestors":[{"relation_name":"is_a","term_name":"malignant colon neoplasm","termid":"MONDO:0021063"},{"relation_name":"is_a","term_name":"colorectal lymphoma","termid":"MONDO:0024656"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0004335","MONDO:0004992"],"is_obsolete":false,"name":"colon lymphoma","secondary_identifiers":["SCTID:133751000119102","ICD9:202.80","UMLS:C0519037","MEDGEN:101033","DOID:1523"],"synonyms":[{"name":"colon lymphoma","type":"exact"},{"name":"colonic lymphoma","type":"exact"},{"name":"lymphoma of colon","type":"exact"},{"name":"lymphoma of the colon","type":"exact"},{"name":"primary colon lymphoma","type":"exact"}],"termid":"MONDO:0002035","xrefs":{"Monarch":{"xref_id":"0002035"}}}


id: PR:P87323
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mcs4 gene.","definition_xrefs":["UniProtKB:P87323","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"response regulator mcs4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC887.10","synonyms":[{"name":"Spom972h-mcs4","type":"exact"},{"name":"mitotic catastrophe suppressor 4 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P87323"}


id: GO:0009567
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Fertilization where one of the two sperm nuclei from the pollen tube fuses with the egg nucleus to form a 2n zygote, and the other fuses with the two polar nuclei to form the 3n primary endosperm nucleus and then develops into the endosperm. The ploidy level of the 2n zygote and 3n primary endosperm nucleus is determined by the ploidy level of the parents involved. An example of this component is found in Arabidopsis thaliana.","definition_xrefs":["GOC:mtg_sensu","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fertilization","termid":"GO:0009566"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"double fertilization forming a zygote and endosperm","synonyms":[{"name":"double fertilization","type":"exact"}],"termid":"GO:0009567"}


id: GO:1904510
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of protein localization to basolateral plasma membrane.","definition_xrefs":["PMID:26115433","GO_REF:0000058","GOC:TermGenie","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of protein localization to cell periphery","termid":"GO:1904377"},{"relation_name":"is_a","term_name":"regulation of protein localization to basolateral plasma membrane","termid":"GO:1904508"},{"relation_name":"is_a","term_name":"positive regulation of protein localization to membrane","termid":"GO:1905477"},{"relation_name":"positively_regulates","term_name":"protein localization to basolateral plasma membrane","termid":"GO:1903361"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of protein localization to basolateral plasma membrane","synonyms":[{"name":"activation of protein localisation in basolateral plasma membrane","type":"narrow"},{"name":"activation of protein localisation to basolateral plasma membrane","type":"narrow"},{"name":"activation of protein localization in basolateral plasma membrane","type":"narrow"},{"name":"activation of protein localization to basolateral plasma membrane","type":"narrow"},{"name":"positive regulation of protein localisation in basolateral plasma membrane","type":"exact"},{"name":"positive regulation of protein localisation to basolateral plasma membrane","type":"exact"},{"name":"positive regulation of protein localization in basolateral plasma membrane","type":"exact"},{"name":"up regulation of protein localisation in basolateral plasma membrane","type":"exact"},{"name":"up regulation of protein localisation to basolateral plasma membrane","type":"exact"},{"name":"up regulation of protein localization in basolateral plasma membrane","type":"exact"},{"name":"up regulation of protein localization to basolateral plasma membrane","type":"exact"},{"name":"up-regulation of protein localisation in basolateral plasma membrane","type":"exact"},{"name":"up-regulation of protein localisation to basolateral plasma membrane","type":"exact"},{"name":"up-regulation of protein localization in basolateral plasma membrane","type":"exact"},{"name":"up-regulation of protein localization to basolateral plasma membrane","type":"exact"},{"name":"upregulation of protein localisation in basolateral plasma membrane","type":"exact"},{"name":"upregulation of protein localisation to basolateral plasma membrane","type":"exact"},{"name":"upregulation of protein localization in basolateral plasma membrane","type":"exact"},{"name":"upregulation of protein localization to basolateral plasma membrane","type":"exact"}],"termid":"GO:1904510"}


id: FYPO:0000630
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which biofilm formation is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular process","termid":"FYPO:0000628"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"abnormal biofilm formation","termid":"FYPO:0000630"}


id: PATO:0000059
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A parental quality inhering in a bearer by virtue of exhibiting the characteristic of a parent.","definition_xrefs":["WordNet:WordNet"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000059 parental quality (obsolete PATO:0000059)","synonyms":[{"name":"parental type","type":"exact"}],"termid":"PATO:0000059"}


id: MONDO:0003541
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An acute lymphoblastic leukemia occurring during adulthood.","definition_xrefs":["NCIT:C4967"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acute lymphoblastic leukemia","termid":"MONDO:0004967"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"adult acute lymphoblastic leukemia","secondary_identifiers":["MEDGEN:199693","DOID:5604","UMLS:C0751606"],"synonyms":[{"name":"acute lymphoblastic leukaemia (ALL)","type":"broad"},{"name":"acute lymphoblastic leukemia (ALL)","type":"broad"},{"name":"adult ALL","type":"exact"},{"name":"adult acute lymphoblastic leukemia","type":"exact"},{"name":"adult acute lymphocytic leukaemia","type":"exact"},{"name":"adult acute lymphocytic leukemia","type":"exact"},{"name":"adult acute lymphogenous leukaemia","type":"exact"},{"name":"adult acute lymphogenous leukemia","type":"exact"},{"name":"adult acute lymphoid leukaemia","type":"exact"},{"name":"adult acute lymphoid leukemia","type":"exact"},{"name":"adult precursor lymphoblastic leukaemia","type":"exact"},{"name":"adult precursor lymphoblastic leukemia","type":"exact"}],"termid":"MONDO:0003541","xrefs":{"Monarch":{"xref_id":"0003541"}}}


id: PBO:0065209
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre-mRNA processing factor 40 homolog A","termid":"PBO:0065209"}


id: MONDO:0023022
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dwarfism thin bones multiple fractures","termid":"MONDO:0023022","xrefs":{"Monarch":{"xref_id":"0023022"}}}


id: GO:0052645
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving F420-0 (5-O-{[(1S)-1-carboxyethoxy](hydroxy)phosphoryl}-1-deoxy-1-(8-hydroxy-2,4-dioxo-2H-pyrimido[4,5-b]quinolin-10(4H)-yl)-D-ribitol), the fragment of coenzyme F420 remaining after formal hydrolytic removal of all of the glutamate residues.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid metabolic process","termid":"GO:0032787"},{"relation_name":"is_a","term_name":"ribitol phosphate metabolic process","termid":"GO:0052648"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"F420-0 metabolic process","synonyms":[{"name":"F(420)-0 metabolic process","type":"exact"},{"name":"F420-0 metabolism","type":"exact"},{"name":"coenzyme F420-0 metabolic process","type":"exact"},{"name":"coenzyme F420-0 metabolism","type":"exact"}],"termid":"GO:0052645"}


id: MONDO:0858989
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete autosomal recessive spastic paraplegia type 84 (obsolete MONDO:0858989)","termid":"MONDO:0858989","xrefs":{"Monarch":{"xref_id":"0858989"}}}


id: PBO:0053859
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1132","termid":"PBO:0053859"}


id: SO:0001135
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Left handed type II: A motif of four consecutive residues that may contain one H-bond, which, if present, is between the main-chain CO of the first residue and the main-chain NH of the fourth. It is characterized by the dihedral angles: Residue(i+1): -140 degrees > phi > -20 degrees, +80 degrees > psi > +180 degrees. Residue(i+2): +20 degrees > phi > +140 degrees, -40 degrees > psi > +90 degrees.","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta_turn","termid":"SO:0001133"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"beta_turn_left_handed_type_two","secondary_identifiers":["BS:00213"],"synonyms":[{"name":"beta turn left handed type two","type":"exact"},{"name":"beta_turn_iil","type":"exact"},{"name":"type II' beta turn","type":"exact"},{"name":"type II' turn","type":"exact"}],"termid":"SO:0001135"}


id: GO:0033982
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-dehydro-L-gulonate 6-phosphate + H+ = L-xylulose 5-phosphate + CO2.","definition_xrefs":["RHEA:14353","EC:4.1.1.85"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016829"],"is_obsolete":false,"name":"3-dehydro-L-gulonate-6-phosphate decarboxylase activity","secondary_identifiers":["MetaCyc:RXN0-705","KEGG_REACTION:R07125"],"synonyms":[{"name":"3-dehydro-L-gulonate-6-phosphate carboxy-lyase (L-xylulose-5-phosphate-forming) activity","type":"related"},{"name":"3-dehydro-L-gulonate-6-phosphate carboxy-lyase activity","type":"related"},{"name":"3-keto-L-gulonate 6-phosphate decarboxylase activity","type":"related"},{"name":"KGPDC","type":"related"},{"name":"SgaH","type":"related"},{"name":"SgbH","type":"related"},{"name":"UlaD","type":"related"}],"termid":"GO:0033982"}


id: PBO:0034249
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-causes_or_contributes_to_condition","termid":"PBO:0034249"}


id: PBO:0036335
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human DLP1 AND DPS1","termid":"PBO:0036335"}


id: GO:0002952
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (2S)-2-hydroxy-3,4-dioxopentyl phosphate = 3-hydroxy-2,4-dioxopentyl phosphate.","definition_xrefs":["RHEA:44360"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular oxidoreductase activity, interconverting aldoses and ketoses","termid":"GO:0016861"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016853","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity","secondary_identifiers":["EC:5.3.1.32","MetaCyc:RXN-15216"],"synonyms":[{"name":"phospho-AI-2 isomerase activity","type":"related"}],"termid":"GO:0002952"}


id: PBO:0047200
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 217 member A","termid":"PBO:0047200"}


id: PBO:0051099
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 1-2","termid":"PBO:0051099"}


id: PBO:0069949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1242, pseudogene","termid":"PBO:0069949"}


id: PBO:0091154
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carbonic anhydrase","termid":"PBO:0091154"}


id: GO:0097520
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A multiprotein complex involved in damage recognition, DNA helix unwinding, and endonucleolytic cleavage at the site of DNA damage.","definition_xrefs":["GOC:cjm","PMID:10197977","GOC:elh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-DNA complex","termid":"GO:0032993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"nucleotide-excision repair, preincision complex","synonyms":[{"name":"UvrA(2)-UvrB(2) complex","type":"narrow"},{"name":"UvrA(2)B(2) complex","type":"narrow"},{"name":"UvrB dimer","type":"narrow"}],"termid":"GO:0097520"}


id: MONDO:0859531
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with language delay and behavioral abnormalities, with or without seizures","secondary_identifiers":["OMIM:620292","UMLS:C5830365","MEDGEN:1841001"],"termid":"MONDO:0859531","xrefs":{"Monarch":{"xref_id":"0859531"}}}


id: GO:0009793
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.","definition_xrefs":["GOC:go_curators","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"embryo development","termid":"GO:0009790"},{"relation_name":"part_of","term_name":"seed development","termid":"GO:0048316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"embryo development ending in seed dormancy","synonyms":[{"name":"embryogenesis","type":"broad"}],"termid":"GO:0009793"}


id: PBO:0062819
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"osteoclast associated Ig-like receptor","termid":"PBO:0062819"}


id: MONDO:0100343
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A phenotypic variant of Bartter syndrome presenting antenatally with maternal polyhydramnios, pre-term delivery and postnatally with polyuria, and nephrocalcinosis. Hypokalemic alkalosis, increased levels of plasma renin and aldosterone, low blood pressure and vascular resistance to angiotensin II are characteristically associated. Genotypically they comprise Type 1 and Type 2 Bartter syndrome.","definition_xrefs":["Orphanet:93604"],"gene_count":0,"genotype_count":0,"name":"obsolete antenatal Bartter syndrome (obsolete MONDO:0100343)","synonyms":[{"name":"Bartter syndrome, furosemide type","type":"exact"},{"name":"Bartter syndrome, furosemide-amiloride type","type":"exact"},{"name":"hyperprostaglandin E syndrome","type":"exact"}],"termid":"MONDO:0100343","xrefs":{"Monarch":{"xref_id":"0100343"}}}


id: PBO:0082957
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytoplasmic protein involved in mitochondrial function or organization; null mutant displays reduced frequency of mitochondrial genome loss; potential Hsp82p interactor","termid":"PBO:0082957"}


id: GO:0051071
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving the pyruvylated galactose residue 4-6-O-[(R)(1-carboxyethylidine)]-Gal-beta-1,3-. The galactose residue is part of a larger polysaccharide chain.","definition_xrefs":["PMID:15173185","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide metabolic process","termid":"GO:0005976"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"4,6-pyruvylated galactose residue metabolic process","synonyms":[{"name":"4,6-pyruvylated galactose residue metabolism","type":"exact"},{"name":"4-6-O-[(R)(1-carboxyethylidine)]-Gal-beta-1,3 metabolic process","type":"exact"},{"name":"4-6-O-[(R)(1-carboxyethylidine)]-Gal-beta-1,3 metabolism","type":"exact"},{"name":"PvGal metabolic process","type":"exact"},{"name":"PvGal metabolism","type":"exact"}],"termid":"GO:0051071"}


id: SO:1000110
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A mutation that reverts the sequence of a previous frameshift mutation back to the initial frame.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000110 frame_restoring_sequence_variant (obsolete SO:1000110)","synonyms":[{"name":"frame restoring mutation","type":"exact"},{"name":"frame restoring sequence variant","type":"exact"}],"termid":"SO:1000110"}


id: GO:0150101
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of microtubule anchoring at centrosome.","definition_xrefs":["GOC:bc","GOC:aruk","PMID:17139249"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of microtubule cytoskeleton organization","termid":"GO:0070507"},{"relation_name":"regulates","term_name":"microtubule anchoring at centrosome","termid":"GO:0034454"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0000226"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007010"}],"interesting_parent_ids":["GO:0007010","GO:0008150","GO:0000226"],"is_obsolete":false,"name":"regulation of microtubule anchoring at centrosome","termid":"GO:0150101"}


id: PBO:0062751
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 52 subfamily K member 3 pseudogene","termid":"PBO:0062751"}


id: GO:1990456
data:
  {"annotated_genes":["SJAG_01305","SJAG_03416","SJAG_03710","SJAG_01929","SJAG_04370"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[70275,70353,75124,80411,117004],"is_not":false,"summary":null,"term":"GO:1990456"}]},"cv_name":"biological_process","definition":"The attachment of a mitochondrion and an endoplasmic reticulum via molecular tethers that physically bridge their respective membranes and attach them to each other. The tethering may facilitate exchange of metabolites between the organelles.","definition_xrefs":["PMID:19556461","PMID:27875684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component organization","termid":"GO:0016043"},{"relation_name":"is_a","term_name":"organelle localization by membrane tethering","termid":"GO:0140056"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01305":null,"SJAG_01929":null,"SJAG_03416":null,"SJAG_03710":null,"SJAG_04370":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0140056"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0140056","GO:0008150"],"is_obsolete":false,"name":"mitochondrion-endoplasmic reticulum membrane tethering","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"mitochondrion-ER attachment","type":"exact"},{"name":"mitochondrion-ER membrane tethering","type":"exact"},{"name":"mitochondrion-ER tethering","type":"exact"},{"name":"mitochondrion-endoplasmic reticulum attachment","type":"exact"},{"name":"mitochondrion-endoplasmic reticulum tethering","type":"exact"}],"termid":"GO:1990456","terms_by_termid":{"GO:1990456":null}}


id: GO:0009385
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: N-acetyl-D-mannosamine-6-phosphate = N-acetyl-D-glucosamine-6-phosphate.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete N-acylmannosamine-6-phosphate 2-epimerase activity (obsolete GO:0009385)","synonyms":[{"name":"N-acylmannosamine-6-P epimerase activity","type":"exact"}],"termid":"GO:0009385"}


id: PBO:0031694
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_nuclear_import","termid":"PBO:0031694"}


id: PBO:0041664
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cactin, spliceosome C complex subunit","termid":"PBO:0041664"}


id: PBO:0078532
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 25","termid":"PBO:0078532"}


id: PBO:0003666
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit L36, Rtc6 (predicted)","termid":"PBO:0003666"}


id: PBO:0066095
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAS p21 protein activator 4D, pseudogene","termid":"PBO:0066095"}


id: MONDO:0014064
data:
  {"annotated_genes":["SJAG_03490"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85468],"is_not":false,"summary":null,"term":"MONDO:0014064"}]},"cv_name":"mondo","definition":"Any mitochondrial complex III deficiency in which the cause of the disease is a mutation in the UQCRB gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial complex III deficiency, nuclear type","termid":"MONDO:0020811"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03490":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004069"}],"interesting_parent_ids":["MONDO:0004069","MONDO:0005066"],"is_obsolete":false,"name":"mitochondrial complex III deficiency nuclear type 3","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:615158","UMLS:C3554606","GARD:15911","DOID:0080112","MEDGEN:767520"],"synonyms":[{"name":"MC3DN3","type":"related"},{"name":"UQCRB mitochondrial complex III deficiency","type":"exact"},{"name":"mitochondrial Complex 3 deficiency, nuclear type 3","type":"related"},{"name":"mitochondrial complex III deficiency caused by mutation in UQCRB","type":"exact"},{"name":"mitochondrial complex III deficiency, nuclear type 3","type":"related"}],"termid":"MONDO:0014064","terms_by_termid":{"MONDO:0014064":null},"xrefs":{"Monarch":{"xref_id":"0014064"}}}


id: GO:0060296
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency of cilium beating involved in ciliary motility.","definition_xrefs":["GOC:krc","GOC:BHF","GOC:cilia","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cilium beat frequency","termid":"GO:0003356"},{"relation_name":"is_a","term_name":"regulation of cilium movement involved in cell motility","termid":"GO:0060295"},{"relation_name":"is_a","term_name":"regulation of biological quality","termid":"GO:0065008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cilium beat frequency involved in ciliary motility","termid":"GO:0060296"}


id: PBO:0080376
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VPS8 subunit of CORVET complex","termid":"PBO:0080376"}


id: GO:0047287
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: beta-D-galactoside + CMP-N-acetyl-beta-neuraminate = an N-acetyl-alpha-neuraminyl-(2->6)-beta-D-galactosyl derivative + CMP + H+.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete lactosylceramide alpha-2,6-N-sialyltransferase activity (obsolete GO:0047287)","termid":"GO:0047287"}


id: GO:0042995
data:
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id: PBO:0112594
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial oxidoreductase for ubiquinone biosynthesis","termid":"PBO:0112594"}


id: MONDO:0850303
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A meningioma that affects the supratentorial brain.","definition_xrefs":["DOID:0080843"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meningioma","termid":"MONDO:0016642"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"supratentorial meningioma","secondary_identifiers":["NCIT:C7048","MEDGEN:234913","UMLS:C1336537"],"termid":"MONDO:0850303","xrefs":{"Monarch":{"xref_id":"0850303"}}}


id: GO:0042058
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of epidermal growth factor receptor signaling pathway activity.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of ERBB signaling pathway","termid":"GO:1901184"},{"relation_name":"regulates","term_name":"epidermal growth factor receptor signaling pathway","termid":"GO:0007173"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of epidermal growth factor receptor signaling pathway","synonyms":[{"name":"regulation of EGF receptor signaling pathway","type":"exact"},{"name":"regulation of EGF receptor signalling pathway","type":"exact"},{"name":"regulation of EGFR signaling pathway","type":"exact"}],"termid":"GO:0042058"}


id: PBO:0044980
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAH-box helicase 33","termid":"PBO:0044980"}


id: PBO:0070307
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY1 pseudogene 13","termid":"PBO:0070307"}


id: PR:P41836
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 26S protease regulatory subunit 8 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR23073:SF12","PRO:DNx","OMA:SCHPO03141"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"26S protease regulatory subunit 8 homolog (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC23G7.12c","secondary_identifiers":["UniProtKB:P41836"],"synonyms":[{"name":"Spom972h-PSMC5","type":"exact"},{"name":"protein let1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P41836"}


id: GO:0072241
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a metanephric distal convoluted tubule cell over time, from its formation to the mature structure.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DCT cell development","termid":"GO:0072140"},{"relation_name":"part_of","term_name":"metanephric DCT cell differentiation","termid":"GO:0072240"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric DCT cell development","synonyms":[{"name":"metanephric distal convoluted tubule cell development","type":"exact"}],"termid":"GO:0072241"}


id: PBO:0075023
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 115-34","termid":"PBO:0075023"}


id: PBO:0065383
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pregnancy specific beta-1-glycoprotein 10, pseudogene","termid":"PBO:0065383"}


id: MONDO:0018496
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete syndromic urogenital tract malformation (obsolete MONDO:0015620)","termid":"MONDO:0015620"},{"relation_name":"excluded_subClassOf","term_name":"obsolete ARX-related epileptic encephalopathy (obsolete MONDO:0015921)","termid":"MONDO:0015921"},{"relation_name":"excluded_subClassOf","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"},{"relation_name":"excluded_subClassOf","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"}],"gene_count":0,"genotype_count":0,"name":"obsolete ARX-related encephalopathy-brain malformation spectrum (obsolete MONDO:0018496)","secondary_identifiers":["Orphanet:423655"],"termid":"MONDO:0018496","xrefs":{"Monarch":{"xref_id":"0018496"}}}


id: GO:0004691
data:
  {"annotated_genes":["SJAG_04312"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[73754],"is_not":false,"summary":null,"term":"GO:0004691"}]},"cv_name":"molecular_function","definition":"cAMP-dependent catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein.","definition_xrefs":["PMID:35053423","PMID:35805104","PMID:32935175"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclic nucleotide-dependent protein kinase activity","termid":"GO:0004690"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04312":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0016301"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016301","GO:0003824","GO:0016740","GO:0140096","GO:0003674","GO:0004672"],"is_obsolete":false,"name":"cAMP-dependent protein kinase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-5617182","Reactome:R-HSA-5687088","Reactome:R-HSA-913451","Reactome:R-HSA-163672","Reactome:R-HSA-9861318","GO:0008602","Reactome:R-HSA-5610741","EC:2.7.11.11","Reactome:R-HSA-177284","Reactome:R-HSA-5610717","Reactome:R-HSA-9838321","Reactome:R-HSA-5610720","Reactome:R-HSA-432232","Reactome:R-HSA-163676","Reactome:R-HSA-177275","Reactome:R-HSA-5617179","Reactome:R-HSA-163773"],"synonyms":[{"name":"3',5' cAMP-dependent protein kinase activity","type":"exact"},{"name":"3',5'-cAMP-dependent protein kinase activity","type":"exact"},{"name":"AMPK","type":"related"},{"name":"ATP:protein phosphotransferase (cAMP-dependent) activity","type":"related"},{"name":"PKA","type":"related"},{"name":"PKA C","type":"related"},{"name":"STK22","type":"related"},{"name":"adenosine 3',5'-cyclophosphate-dependent protein kinase activity","type":"exact"},{"name":"cAMP-dependent protein kinase, intrinsic catalyst activity","type":"exact"},{"name":"cyclic AMP-dependent protein kinase activity","type":"exact"},{"name":"protein kinase A activity","type":"broad"}],"termid":"GO:0004691","terms_by_termid":{"GO:0004691":null}}


id: MOD:00554
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"OBSOLETE because Unimod entry 202 was merged with entry 195, remap to MOD:00548. modification from Unimod Chemical derivative","definition_xrefs":["Unimod:202"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:00554 APTA-d0 with no neutral loss (obsolete MOD:00554)","termid":"MOD:00554"}


id: PBO:0084227
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H subunit of the mitochondrial glycine decarboxylase complex; glycine decarboxylase is required for the catabolism of glycine to 5,10-methylene-THF; also required for all protein lipoylation; expression is regulated by levels of 5,10-methylene-THF","termid":"PBO:0084227"}


id: GO:0033260
data:
  {"annotated_genes":["SJAG_02908","SJAG_00247","SJAG_02172","SJAG_02074","SJAG_01762","SJAG_01076","SJAG_01068","SJAG_00728","SJAG_04671","SJAG_00618","SJAG_05232","SJAG_00400","SJAG_03160","SJAG_01884","SJAG_03722","SJAG_04341","SJAG_00863","SJAG_04879","SJAG_02818","SJAG_03695","SJAG_01221","SJAG_02348","SJAG_02439","SJAG_05239","SJAG_04190","SJAG_00536","SJAG_00814","SJAG_02198","SJAG_03843","SJAG_00884","SJAG_02667","SJAG_01823","SJAG_02294","SJAG_04183","SJAG_04816","SJAG_00198","SJAG_03525","SJAG_03451","SJAG_00874","SJAG_02162","SJAG_02690","SJAG_03438","SJAG_01410","SJAG_02039","SJAG_04210","SJAG_02822","SJAG_05180","SJAG_00857","SJAG_01374","SJAG_00364","SJAG_03855","SJAG_00272","SJAG_02182","SJAG_00399","SJAG_03780","SJAG_04995","SJAG_01010","SJAG_02992","SJAG_01354","SJAG_03048","SJAG_04150","SJAG_01210","SJAG_02199","SJAG_02079","SJAG_01677","SJAG_03927","SJAG_02607","SJAG_00696","SJAG_00573","SJAG_04272","SJAG_04877","SJAG_03898","SJAG_00729","SJAG_01832","SJAG_06022","SJAG_03720","SJAG_03495","SJAG_05197","SJAG_00327"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89912,98449,99615,104672,104769,108199,111928,112281,113212,116642],"is_not":false,"summary":null,"term":"GO:0033260"},{"annotations":[107710,110311,113948,115791],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0140529"},{"annotations":[112657,70716,110314,112899,113950,115793],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1902983"},{"annotations":[103662],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0140530"},{"annotations":[115795,113540,117729,74977,73635,111763,106793,75359,107605,99754,92290,107713,110933,71408,99691,94884,79550],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1902975"},{"annotations":[104570,103170,105290,109477,118588,95573],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1903459"},{"annotations":[94293,105291,95574,104571,107348,89900,95605,107714],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1903460"},{"annotations":[109493,112135],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1990505"},{"annotations":[72411,57546,78523],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1902977"},{"annotations":[103664,115410,110935],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1902985"},{"annotations":[112902,64395,117192,96345,98574,95408,108117,99281,96511,95165,91278,89491,109925,109449,108093],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1990426"},{"annotations":[117237],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:1903464"},{"annotations":[98104,102709,109262],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:1903467"},{"annotations":[103299],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1902315"},{"annotations":[100986,101844,95394,100952,72648,92983,104496],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1903461"},{"annotations":[103665,117670,112417],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1903468"},{"annotations":[106985,89384,102715,116621],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1904514"},{"annotations":[102719],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1903465"},{"annotations":[61382,66345,61158,62850,57181,58465],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006279"},{"annotations":[103291,112903,104497,88623],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1903469"}]},"cv_name":"biological_process","definition":"The 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id: MONDO:0007340
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A condition that primarily affects the development of the bones and teeth. Characteristic features include underdeveloped or absent collarbones (clavicles); dental abnormalities; and delayed closing of the spaces between the skull bones (fontanels). Other features may include decreased bone density (osteopenia), osteoporosis, hearing loss, bone abnormalities of the hands, and recurrent sinus and ear infections. CCD is caused by changes (mutations) in the RUNX2 gene and inheritance is autosomal dominant. It may be inherited from an affected parent or occur due to a new mutation in the RUNX2 gene. Management may include dental procedures, treatment of sinus and ear infections, use of helmets for high-risk activities, and/or surgery for skeletal problems.","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"osteochondrodysplasia","termid":"MONDO:0005516"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"cleidocranial dysplasia 1","secondary_identifiers":["OMIM:119600","MEDGEN:3486","GARD:6118","MESH:D002973","NCIT:C75020","SCTID:65976001","Orphanet:1452","DOID:13994","ICD9:755.59","UMLS:C0008928"],"synonyms":[{"name":"CCD","type":"related"},{"name":"CLCD","type":"related"},{"name":"Cleidocranial Dysplasia","type":"exact"},{"name":"Marie-Sainton disease","type":"exact"},{"name":"cleidocranial dysostosis","type":"exact"},{"name":"cleidocranial dysplasia","type":"exact"},{"name":"cleidocranial dysplasia, forme fruste, dental anomalies only","type":"related"},{"name":"cleidocranial dysplasia, forme fruste, with brachydactyly","type":"related"},{"name":"dysplasia cleidocranial","type":"related"}],"termid":"MONDO:0007340","xrefs":{"Monarch":{"xref_id":"0007340"}}}


id: PBO:0005260
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TREX complex subunit Tex1 (predicted)","termid":"PBO:0005260"}


id: FYPO:0002638
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle checkpoint phenotype in which the mitotic spindle assembly checkpoint is activated more frequently than normal, typically under conditions that do not cause checkpoint activation in wild-type cells. The mitotic spindle assembly checkpoint normally delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and chromosomes are attached to the spindle.","definition_xrefs":["PomBase:vw","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic spindle assembly checkpoint","termid":"FYPO:0000168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0000298"],"is_obsolete":false,"name":"increased activation of mitotic spindle assembly checkpoint","synonyms":[{"name":"activation of mitotic spindle assembly checkpoint increased","type":"exact"},{"name":"increased Bub1 foci","type":"related"},{"name":"increased Mad2 foci","type":"related"},{"name":"increased activation of mitotic cell cycle spindle assembly checkpoint","type":"exact"},{"name":"increased mitotic cell cycle spindle assembly checkpoint activation","type":"exact"}],"termid":"FYPO:0002638"}


id: PR:O14045
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- tpt1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14045"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA 2'-phosphotransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC2C4.12c","synonyms":[{"name":"Spom972h-tpt1","type":"exact"}],"termid":"PR:O14045"}


id: PBO:0069417
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 679, pseudogene","termid":"PBO:0069417"}


id: GO:0034364
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A lipoprotein particle with a high density (typically 1.063-1.21 g/ml) and a diameter of 5-10 nm that contains APOAs and may contain APOCs and APOE; found in blood and carries lipids from body tissues to the liver as part of the reverse cholesterol transport process.","definition_xrefs":["GOC:pde","GOC:rl","GOC:BHF","GOC:mah","GOC:expert_pt"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma lipoprotein particle","termid":"GO:0034358"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005576"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005576","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"high-density lipoprotein particle","synonyms":[{"name":"HDL complex","type":"exact"},{"name":"HDL particle","type":"exact"},{"name":"HDL2","type":"related"},{"name":"HDL3","type":"related"},{"name":"high-density lipoprotein class complex","type":"exact"}],"termid":"GO:0034364"}


id: BFO:0000066
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"occurs_in","termid":"BFO:0000066"}


id: MONDO:1011110
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Cryptorchidism that occurs in puma.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cryptorchidism, non-human animal","termid":"MONDO:1010275"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cryptorchidism, puma","secondary_identifiers":["OMIA:000243-9696"],"termid":"MONDO:1011110","xrefs":{"Monarch":{"xref_id":"1011110"}}}


id: GO:0160036
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of postsynaptic density assembly.","definition_xrefs":["PMID:17626212"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of postsynaptic density assembly","termid":"GO:0099151"},{"relation_name":"is_a","term_name":"positive regulation of organelle assembly","termid":"GO:1902117"},{"relation_name":"is_a","term_name":"positive regulation of postsynaptic density organization","termid":"GO:1905876"},{"relation_name":"positively_regulates","term_name":"postsynaptic density assembly","termid":"GO:0097107"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"positive regulation of postsynaptic density assembly","termid":"GO:0160036"}


id: MONDO:0003746
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A spindle cell melanoma that involves the ciliary body.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"malignant ciliary body melanoma","termid":"MONDO:0003912"},{"relation_name":"is_a","term_name":"iris spindle cell melanoma","termid":"MONDO:0004188"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0005328"],"is_obsolete":false,"name":"ciliary body spindle cell melanoma","secondary_identifiers":["UMLS:C1333052","MEDGEN:232367","NCIT:C6117","DOID:6043"],"synonyms":[{"name":"ciliary body spindle cell melanoma","type":"exact"},{"name":"spindle cell melanoma of ciliary body","type":"exact"},{"name":"spindle cell melanoma of the ciliary body","type":"exact"}],"termid":"MONDO:0003746","xrefs":{"Monarch":{"xref_id":"0003746"}}}


id: GO:0036292
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which interchain hydrogen bonds between two single-stranded DNA (ssDNA) are reformed to regenerate double-stranded DNA (dsDNA). ssDNA is often bound and stabilized by proteins such as replication protein A (RPA) to form ssDNA bubbles. The bubbles can be rewound by ATP-dependent motors to reform base pairs between strands and thus dsDNA.","definition_xrefs":["PMID:22704558","PMID:22705370","PMID:22759634","PMID:21078962"],"gene_count":0,"genotype_count":0,"name":"obsolete DNA rewinding (obsolete GO:0036292)","synonyms":[{"name":"DNA annealing","type":"related"},{"name":"RPA-dependent DNA rewinding","type":"narrow"},{"name":"single-stranded DNA bubble rewinding","type":"narrow"}],"termid":"GO:0036292"}


id: GO:0016710
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: trans-cinnamate + NADPH + H+ + O2 = 4-hydroxycinnamate + NADP+ + H2O.","definition_xrefs":["EC:1.14.14.91"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"trans-cinnamate 4-monooxygenase activity","secondary_identifiers":["RHEA:10608","MetaCyc:TRANS-CINNAMATE-4-MONOOXYGENASE-RXN"],"synonyms":[{"name":"CA4H activity","type":"narrow"},{"name":"cinnamate 4-hydroxylase activity","type":"related"},{"name":"cinnamate 4-monooxygenase activity","type":"related"},{"name":"cinnamate hydroxylase activity","type":"related"},{"name":"cinnamic 4-hydroxylase activity","type":"related"},{"name":"cinnamic acid 4-hydroxylase activity","type":"related"},{"name":"cinnamic acid 4-monooxygenase activity","type":"related"},{"name":"cinnamic acid p-hydroxylase activity","type":"related"},{"name":"cytochrome P450 cinnamate 4-hydroxylase activity","type":"related"},{"name":"hydroxylase, cinnamate 4-","type":"related"},{"name":"oxygenase, cinnamate 4-mono-","type":"related"},{"name":"t-cinnamic acid hydroxylase activity","type":"related"},{"name":"trans-cinnamate 4-hydroxylase activity","type":"related"},{"name":"trans-cinnamate,NADPH:oxygen oxidoreductase (4-hydroxylating)","type":"related"},{"name":"trans-cinnamic acid 4-hydroxylase activity","type":"related"}],"termid":"GO:0016710"}


id: PBO:0030983
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_histone_H3-K9_dimethylation_at_centromere","termid":"PBO:0030983"}


id: PBO:0031007
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_localization_to_nucleus","termid":"PBO:0031007"}


id: PBO:0031384
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cell_population_growth","termid":"PBO:0031384"}


id: GO:0090100
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency, or extent of the series of molecular signals generated as a consequence of a transmembrane receptor serine/threonine kinase binding to its physiological ligand.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of signal transduction","termid":"GO:0009967"},{"relation_name":"is_a","term_name":"regulation of transmembrane receptor protein serine/threonine kinase signaling pathway","termid":"GO:0090092"},{"relation_name":"positively_regulates","term_name":"cell surface receptor protein serine/threonine kinase signaling pathway","termid":"GO:0007178"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway","synonyms":[{"name":"positive regulation of transmembrane receptor protein serine/threonine kinase signalling pathway","type":"exact"}],"termid":"GO:0090100"}


id: MONDO:0006159
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A gastrointestinal stromal tumor that arises from the colon or rectum. The majority of cases have spindle cell morphology. Gastrointestinal stromal tumors of the colon are usually advanced upon detection and tend to have a poor prognosis; gastrointestinal stromal tumors of the rectum usually have an aggressive clinical course.","definition_xrefs":["NCIT:C27735"],"direct_ancestors":[{"relation_name":"is_a","term_name":"colorectal neoplasm","termid":"MONDO:0005335"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"colorectal gastrointestinal stromal tumor","secondary_identifiers":["MEDGEN:272496","UMLS:C1333109","EFO:1000192"],"synonyms":[{"name":"colorectal (colon or rectal) gastrointestinal stromal tumor (gist)","type":"exact"},{"name":"colorectal (colon or rectal) gastrointestinal stromal tumour (gist)","type":"exact"},{"name":"colorectal gastrointestinal stromal tumor","type":"exact"},{"name":"colorectal gastrointestinal stromal tumor (gist)","type":"exact"},{"name":"colorectal gastrointestinal stromal tumour (gist)","type":"exact"},{"name":"colorectal gist","type":"exact"}],"termid":"MONDO:0006159","xrefs":{"Monarch":{"xref_id":"0006159"}}}


id: GO:0061458
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the reproductive system over time from its formation to the mature structure. The reproductive system consists of the organs that function in reproduction.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"system development","termid":"GO:0048731"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"reproductive system development","termid":"GO:0061458"}


id: PBO:0068197
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 504","termid":"PBO:0068197"}


id: GO:0062213
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: peroxynitrite = nitrate.","definition_xrefs":["PMID:30524950","RHEA:63116"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isomerase activity","termid":"GO:0016853"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0003824","GO:0016853","GO:0003674"],"is_obsolete":false,"name":"peroxynitrite isomerase activity","termid":"GO:0062213"}


id: GO:0060690
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquire specialized structural and/or functional features of an epithelial cell of the salivary gland.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell differentiation","termid":"GO:0030855"},{"relation_name":"is_a","term_name":"cell differentiation involved in salivary gland development","termid":"GO:0060689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epithelial cell differentiation involved in salivary gland development","termid":"GO:0060690"}


id: MONDO:0012188
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Neuronal ceroid lipofuscinosis 9 (CLN9-NCL) is a rare condition that affects the nervous system. Signs and symptoms of the condition generally develop in early childhood (average age 4 years) and may include loss of muscle coordination (ataxia), seizures that do not respond to medications, muscle twitches (myoclonus), visual impairment, and developmental regression (the loss of previously acquired skills). The underlying genetic cause of CLN9-NCLis unknown but it appears to be inherited in an autosomal recessive manner. Treatment options are limited to therapies that can help relieve some of the symptoms.","direct_ancestors":[{"relation_name":"is_a","term_name":"juvenile neuronal ceroid lipofuscinosis","termid":"MONDO:0019262"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002561"},{"rel_name":"is_a","termid":"MONDO:0002039"},{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0002561","MONDO:0005559","MONDO:0002039","MONDO:0002525"],"is_obsolete":false,"name":"neuronal ceroid lipofuscinosis 9","secondary_identifiers":["DOID:0110733","MEDGEN:332304","MESH:C537953","GARD:6618","OMIM:609055","UMLS:C1836841","Orphanet:228357"],"synonyms":[{"name":"CLN 9","type":"related"},{"name":"CLN9","type":"exact"},{"name":"CLN9 disease","type":"related"},{"name":"ceroid lipofuscinosis, neuronal, 9","type":"related"},{"name":"neuronal ceroid lipofuscinosis type 9","type":"exact"}],"termid":"MONDO:0012188","xrefs":{"Monarch":{"xref_id":"0012188"}}}


id: PBO:0085035
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Non-catalytic subunit of N-terminal acetyltransferase of the NatC type; required for replication of dsRNA virus; member of the Sm protein family","termid":"PBO:0085035"}


id: MONDO:1012798
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any osteogenesis imperfecta that occurs in cattle due to a mutation in the COL1A1 gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"osteogenesis imperfecta, cattle","termid":"MONDO:1011580"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"osteogenesis imperfecta, type II, COL1A1-related, cattle","secondary_identifiers":["OMIA:002127-9913"],"synonyms":[{"name":"osteogenesis imperfecta, type II, COL1A1-related, cattle","type":"exact"}],"termid":"MONDO:1012798","xrefs":{"Monarch":{"xref_id":"1012798"}}}


id: MONDO:0021396
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A polyp that involves the mammalian vulva.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"female reproductive system disorder","termid":"MONDO:0002263"},{"relation_name":"is_a","term_name":"polyp","termid":"MONDO:0005079"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polyp of vulva","secondary_identifiers":["NCIT:C3978","SCTID:57158005","UMLS:C0269218","icd11.foundation:108731413","ICD9:624.6","MEDGEN:124351","ICD10CM:N84.3"],"synonyms":[{"name":"mammalian vulva polyp","type":"exact"},{"name":"polyp of the vulva","type":"exact"},{"name":"vulva polyp","type":"exact"},{"name":"vulvar polyp","type":"exact"}],"termid":"MONDO:0021396","xrefs":{"Monarch":{"xref_id":"0021396"}}}


id: GO:0046869
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The incorporation of iron into a 2Fe-2S iron-sulfur cluster via tris-L-cysteinyl-L-aspartato diiron disulfide.","definition_xrefs":["RESID:AA0331"],"gene_count":0,"genotype_count":0,"name":"obsolete iron incorporation into iron-sulfur cluster via tris-L-cysteinyl-L-aspartato diiron disulfide (obsolete GO:0046869)","synonyms":[{"name":"iron incorporation into iron-sulphur cluster via tris-L-cysteinyl-L-aspartato diiron disulphide","type":"exact"}],"termid":"GO:0046869"}


id: MONDO:0859565
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"familial atrioventricular septal defect","termid":"MONDO:0020290"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"atrioventricular septal defect","secondary_identifiers":["OMIM:606215","UMLS:C1389018","MEDGEN:501123"],"termid":"MONDO:0859565","xrefs":{"Monarch":{"xref_id":"0859565"}}}


id: MONDO:0014084
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"spinocerebellar ataxia, autosomal recessive, with axonal neuropathy 2","termid":"MONDO:0018996"},{"relation_name":"is_a","term_name":"autosomal recessive cerebellar ataxia","termid":"MONDO:0015244"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0005559"],"is_obsolete":false,"name":"ataxia with oculomotor apraxia type 3","secondary_identifiers":["DOID:0060557","GARD:13112","UMLS:C3554690","MEDGEN:767604","OMIM:615217"],"synonyms":[{"name":"AOA3","type":"related"},{"name":"ataxia-oculomotor apraxia 3","type":"exact"},{"name":"ataxia-oculomotor apraxia type 3","type":"exact"},{"name":"ataxia-oculomotor apraxia-3","type":"related"}],"termid":"MONDO:0014084","xrefs":{"Monarch":{"xref_id":"0014084"}}}


id: MONDO:0006352
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare adenoid cystic carcinoma that arises from the paranasal sinuses. It usually has an aggressive clinical course characterized by high recurrence rates and distant metastases.","definition_xrefs":["NCIT:C6019"],"direct_ancestors":[{"relation_name":"is_a","term_name":"paranasal sinus carcinoma","termid":"MONDO:0000380"},{"relation_name":"is_a","term_name":"adenoid cystic carcinoma","termid":"MONDO:0004971"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"paranasal sinus adenoid cystic carcinoma","secondary_identifiers":["UMLS:C1335337","MEDGEN:233840"],"synonyms":[{"name":"accessory sinus adenoid cystic carcinoma","type":"exact"},{"name":"adenoid cystic carcinoma of accessory sinus","type":"exact"},{"name":"adenoid cystic carcinoma of paranasal sinus","type":"exact"},{"name":"adenoid cystic carcinoma of the accessory sinus","type":"exact"},{"name":"adenoid cystic carcinoma of the paranasal sinus","type":"exact"},{"name":"paranasal sinus adenoid cystic carcinoma","type":"exact"}],"termid":"MONDO:0006352","xrefs":{"Monarch":{"xref_id":"0006352"}}}


id: GO:0015951
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways by which a purine ribonucleotide is synthesized from another purine ribonucleotide.","definition_xrefs":["ISBN:0471394831","GOC:mah","ISBN:0306444747"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine ribonucleotide metabolic process","termid":"GO:0009150"},{"relation_name":"is_a","term_name":"purine nucleotide interconversion","termid":"GO:0015950"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"purine ribonucleotide interconversion","termid":"GO:0015951"}


id: PBO:0016554
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin protein ligase E3, unknown biological role (predicted)","termid":"PBO:0016554"}


id: GO:1904301
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of maternal process involved in parturition.","definition_xrefs":["GOC:TermGenie","PMID:1849751","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of multicellular organismal process","termid":"GO:0051239"},{"relation_name":"is_a","term_name":"regulation of reproductive process","termid":"GO:2000241"},{"relation_name":"regulates","term_name":"maternal process involved in parturition","termid":"GO:0060137"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of maternal process involved in parturition","termid":"GO:1904301"}


id: GO:0015826
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of threonine, (2R*,3S*)-2-amino-3-hydroxybutanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neutral amino acid transport","termid":"GO:0015804"},{"relation_name":"is_a","term_name":"carboxylic acid transport","termid":"GO:0046942"},{"relation_name":"is_a","term_name":"nitrogen compound transport","termid":"GO:0071705"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"threonine transport","synonyms":[{"name":"L-threonine transport","type":"narrow"}],"termid":"GO:0015826"}


id: PBO:0072777
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SAC3 domain containing 1","termid":"PBO:0072777"}


id: FYPO:0004032
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at ribosomal DNA repeat regions is increased.","definition_xrefs":["PMID:25392932","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein localization to chromatin at ncRNA genes","termid":"FYPO:0007011"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"increased protein localization to chromatin at rDNA","synonyms":[{"name":"increased protein localisation to chromatin at rDNA","type":"exact"},{"name":"increased protein localization to chromatin at rDNA during mitotic cell cycle","type":"related"},{"name":"increased protein localization to chromatin at rDNA during vegetative growth","type":"exact"},{"name":"increased protein localization to chromatin at rRNA genes","type":"exact"},{"name":"increased protein localization to chromatin at ribosomal DNA","type":"exact"}],"termid":"FYPO:0004032"}


id: PBO:0114138
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenine deaminase Dea3","termid":"PBO:0114138"}


id: PBO:0083018
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Deleted ORF; does not encode a discrete protein; YFR024C was originally annotated as a separate ORF, but was later removed because it was demonstrated to be theC-terminus of LSB3/YFR024C-A","termid":"PBO:0083018"}


id: MONDO:0003100
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplasm (disease) that involves the nerve plexus.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peripheral nervous system neoplasm","termid":"MONDO:0001406"},{"relation_name":"is_a","term_name":"nerve plexus disorder","termid":"MONDO:0024432"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244"],"is_obsolete":false,"name":"nerve plexus neoplasm","secondary_identifiers":["UMLS:C1334945","DOID:4693","MEDGEN:235366","NCIT:C5822"],"synonyms":[{"name":"neoplasm of nerve plexus","type":"exact"},{"name":"neoplasm of the nerve plexus","type":"exact"},{"name":"nerve plexus neoplasm","type":"exact"},{"name":"nerve plexus neoplasm (disease)","type":"exact"},{"name":"nerve plexus neoplasms","type":"exact"},{"name":"nerve plexus tumor","type":"exact"},{"name":"nerve plexus tumors","type":"exact"},{"name":"nerve plexus tumour","type":"exact"},{"name":"nerve plexus tumours","type":"exact"},{"name":"neural plexus neoplasms","type":"exact"},{"name":"neural plexus tumors","type":"exact"},{"name":"neural plexus tumours","type":"exact"},{"name":"tumor of nerve plexus","type":"exact"},{"name":"tumor of the nerve plexus","type":"exact"},{"name":"tumour of nerve plexus","type":"exact"},{"name":"tumour of the nerve plexus","type":"exact"}],"termid":"MONDO:0003100","xrefs":{"Monarch":{"xref_id":"0003100"}}}


id: GO:0005862
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A form of the tropomyosin dimer found associated with actin and the troponin complex in muscle thin filaments.","definition_xrefs":["ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"striated muscle thin filament","termid":"GO:0005865"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0015629"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0015629","GO:0005737"],"is_obsolete":false,"name":"muscle thin filament tropomyosin","termid":"GO:0005862"}


id: PBO:0073030
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secernin 3","termid":"PBO:0073030"}


id: PBO:0003367
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin C-terminal hydrolase Ubp15","termid":"PBO:0003367"}


id: PBO:0109230
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KLF7 pseudogene 1","termid":"PBO:0109230"}


id: PBO:0045011
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"disco interacting protein 2 homolog A","termid":"PBO:0045011"}


id: MONDO:0001680
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign papilloma that arises from the vagina in infants and young women.","definition_xrefs":["NCIT:C40255"],"direct_ancestors":[{"relation_name":"is_a","term_name":"benign vaginal neoplasm","termid":"MONDO:0000647"},{"relation_name":"is_a","term_name":"vaginal glandular neoplasm","termid":"MONDO:0001704"},{"relation_name":"is_a","term_name":"glandular papilloma","termid":"MONDO:0021078"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vaginal mullerian papilloma","secondary_identifiers":["DOID:133","UMLS:C1519926","MEDGEN:276952"],"synonyms":[{"name":"vaginal Muellerian papilloma","type":"exact"},{"name":"vaginal Mullerian papilloma","type":"exact"},{"name":"vaginal Müllerian papilloma","type":"exact"}],"termid":"MONDO:0001680","xrefs":{"Monarch":{"xref_id":"0001680"}}}


id: GO:0047839
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: dATP + depurinated DNA = ribose triphosphate + DNA.","definition_xrefs":["EC:2.6.99.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity, transferring nitrogenous groups","termid":"GO:0016769"},{"relation_name":"is_a","term_name":"catalytic activity, acting on DNA","termid":"GO:0140097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140097"}],"interesting_parent_ids":["GO:0003674","GO:0016769","GO:0003824","GO:0016740","GO:0140097"],"is_obsolete":false,"name":"dATP(dGTP)-DNA purinetransferase activity","secondary_identifiers":["MetaCyc:DATPDGTP--DNA-PURINE-TRANSFERASE-RXN"],"synonyms":[{"name":"dATP(dGTP)--DNA purine transferase activity","type":"exact"},{"name":"dATP(dGTP):depurinated-DNA purine transferase activity","type":"related"}],"termid":"GO:0047839"}


id: PBO:0077720
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TNPO3 pseudogene 1","termid":"PBO:0077720"}


id: PBO:0049551
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2B clustered histone 13","termid":"PBO:0049551"}


id: PBO:0028379
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_hypoxanthine_DNA_N-glycosylase_activity","termid":"PBO:0028379"}


id: MONDO:0025513
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An autoimmune form of urticaria (disease).","definition_xrefs":["MONDO:patterns/autoimmune"],"direct_ancestors":[{"relation_name":"is_a","term_name":"urticaria","termid":"MONDO:0005492"},{"relation_name":"is_a","term_name":"autoimmune disease","termid":"MONDO:0007179"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0005046"],"is_obsolete":false,"name":"autoimmune urticaria","secondary_identifiers":["ICD9:708.8","SCTID:402397006","MEDGEN:725554","UMLS:C1304191"],"synonyms":[{"name":"autoimmune urticaria","type":"exact"},{"name":"autoimmune urticaria (disease)","type":"exact"}],"termid":"MONDO:0025513","xrefs":{"Monarch":{"xref_id":"0025513"}}}


id: PBO:0070962
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L18a pseudogene 17","termid":"PBO:0070962"}


id: PBO:0034401
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-dependent_on_(obsolete_dependent_on)","termid":"PBO:0034401"}


id: PBO:0063875
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol glycan anchor biosynthesis class F pseudogene 1","termid":"PBO:0063875"}


id: PBO:0017682
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ABC transmembrane transporter Pdr1","termid":"PBO:0017682"}


id: GO:0021753
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the superior salivary nucleus over time, from its formation to the mature structure.","definition_xrefs":["GO_REF:0000021","GOC:curators","GOC:jid","GOC:dgh","GOC:dph","GOC:cls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"salivary nucleus development","termid":"GO:0021751"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"superior salivary nucleus development","termid":"GO:0021753"}


id: MONDO:0012528
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any hypogonadotropic hypogonadism in which the cause of the disease is a mutation in the PROK2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Kallmann syndrome","termid":"MONDO:0018800"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypogonadotropic hypogonadism 4 with or without anosmia","secondary_identifiers":["GARD:10772","ICD10CM:E23.0","MESH:C565696","UMLS:C3552343","MEDGEN:765257","DOID:0090077","OMIM:610628"],"synonyms":[{"name":"HH4","type":"related"},{"name":"KAL4","type":"narrow"},{"name":"Kallman syndrome 4","type":"narrow"},{"name":"Kallmann syndrome 4","type":"related"},{"name":"PROK2 hypogonadotropic hypogonadism","type":"exact"},{"name":"hypogonadotropic hypogonadism 4 with or without anosmia","type":"exact"},{"name":"hypogonadotropic hypogonadism caused by mutation in PROK2","type":"exact"}],"termid":"MONDO:0012528","xrefs":{"Monarch":{"xref_id":"0012528"}}}


id: PATO:0001293
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A scalar EM radiation quality which obtains by the capacity of the bearer to retain radiation.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"full-spectrum EM radiation quality","termid":"PATO:0001292"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"absorption quality","termid":"PATO:0001293"}


id: SO:0002351
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A fragile site found in the chromosomes of less than five percent of the human population.","definition_xrefs":["PMID:16236432","PMID:17608616"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fragile_site","termid":"SO:0002349"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rare_fragile_site","termid":"SO:0002351"}


id: PBO:0035987
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_histone_H4-K20_trimethylation_during_vegetative_growth","termid":"PBO:0035987"}


id: PBO:0001731
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methionyl-tRNA formyltransferase Fmt1 (predicted)","termid":"PBO:0001731"}


id: PATO:0000971
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000971 absolute permeability (obsolete PATO:0000971)","termid":"PATO:0000971"}


id: PBO:0086903
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative tubulin tyrosine ligase associated with P-bodies; may have a role in mRNA metabolism; yeast knockout collection strain identified as a pby1 null mutant is actually wild-type for PBY1 and deleted for mms4","termid":"PBO:0086903"}


id: MONDO:0012703
data:
  {"annotated_genes":["SJAG_02509","SJAG_04387"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[85494,85495],"is_not":false,"summary":null,"term":"MONDO:0012703"}]},"cv_name":"mondo","definition":"Lissencephaly (LIS) due to TUBA1A mutation is a congenital cortical development anomaly due to abnormal neuronal migration involving neocortical and hippocampal lamination, corpus callosum, cerebellum and brainstem. A large clinical spectrum can be observed, from children with severe epilepsy and intellectual and motor deficit to cases with severe cerebral dysgenesis in the antenatal period leading to pregnancy termination due to the severity of the prognosis.","definition_xrefs":["Orphanet:171680"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lissencephaly type 3","termid":"MONDO:0015148"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02509":null,"SJAG_04387":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"lissencephaly due to TUBA1A mutation","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:C566908","MEDGEN:930822","NCIT:C148461","OMIM:611603","GARD:17066","UMLS:C4305153"],"synonyms":[{"name":"LIS3","type":"exact"},{"name":"lissencephaly 3","type":"exact"}],"termid":"MONDO:0012703","terms_by_termid":{"MONDO:0012703":null},"xrefs":{"Monarch":{"xref_id":"0012703"}}}


id: PR:O74847
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A brain protein 44-like protein that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR14154:SF3","PRO:DNx","OMA:SCHPO04225"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial pyruvate carrier 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1235.11","secondary_identifiers":["UniProtKB:O74847"],"synonyms":[{"name":"MPC1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-MPC1","type":"exact"}],"termid":"PR:O74847"}


id: FYPO:0005613
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the nuclear envelope is normal (i.e. indistinguishable from wild type) when the cell undergoes transition from G0 phase to G1.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to nuclear envelope","termid":"FYPO:0005612"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257","FYPO:0000138"],"is_obsolete":false,"name":"normal protein localization to nuclear envelope during G0 to G1 transition","synonyms":[{"name":"normal protein localisation to nuclear envelope during G0 to G1 transition","type":"exact"},{"name":"normal protein localization after G0 to G1 transition","type":"exact"},{"name":"normal protein localization during cell cycle re-entry","type":"exact"},{"name":"normal protein localization during cell quiescence to G1 transition","type":"exact"},{"name":"normal protein localization during exit from cell quiescence","type":"exact"},{"name":"normal protein localization during quiescence to G1 transition","type":"exact"},{"name":"normal protein localization during recovery from quiescence","type":"exact"},{"name":"normal protein relocalization to nuclear envelope during G0 to G1 transition","type":"narrow"}],"termid":"FYPO:0005613"}


id: PBO:0064885
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 2 scaffold subunit Abeta","termid":"PBO:0064885"}


id: MONDO:0016145
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"qualitative or quantitative protein defects in neuromuscular diseases","termid":"MONDO:0016139"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"qualitative or quantitative defects of dysferlin","secondary_identifiers":["Orphanet:207073","MESH:C537995","GARD:2003","UMLS:C2931687","MEDGEN:419874"],"synonyms":[{"name":"dysferlinopathy","type":"exact"}],"termid":"MONDO:0016145","xrefs":{"Monarch":{"xref_id":"0016145"}}}


id: MONDO:0011118
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An acute leukemia of ambiguous lineage in which there is a dual population of blasts with each population expressing markers of a distinct lineage (myeloid and lymphoid or B-and T-lymphocyte). (WHO, 2001) -- 2003","definition_xrefs":["NCIT:C6923"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acute leukemia of ambiguous lineage","termid":"MONDO:0019460"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570","MONDO:0004992"],"is_obsolete":false,"name":"bilineal acute myeloid leukemia","secondary_identifiers":["Orphanet:98836","UMLS:C0349680","MEDGEN:87614"],"synonyms":[{"name":"acute bilineal leukaemia","type":"exact"},{"name":"acute bilineal leukemia","type":"exact"},{"name":"bilineal acute leukaemia","type":"related"},{"name":"bilineal acute leukemia","type":"related"}],"termid":"MONDO:0011118","xrefs":{"Monarch":{"xref_id":"0011118"}}}


id: PBO:0049255
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutaredoxin and cysteine rich domain containing 1","termid":"PBO:0049255"}


id: GO:0042719
data:
  {"annotated_genes":["SJAG_02524","SJAG_01949","SJAG_04208","SJAG_00687"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[88978,90714,93115,116654],"is_not":false,"summary":null,"term":"GO:0042719"}]},"cv_name":"cellular_component","definition":"Soluble complex of the mitochondrial intermembrane space composed of various combinations of small Tim proteins; acts as a protein transporter to guide proteins to the Tim22 complex for insertion into the mitochondrial inner membrane.","definition_xrefs":["PMID:12581629"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial protein-containing complex","termid":"GO:0098798"},{"relation_name":"is_a","term_name":"transporter complex","termid":"GO:1990351"},{"relation_name":"part_of","term_name":"mitochondrial intermembrane space","termid":"GO:0005758"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00687":null,"SJAG_01949":null,"SJAG_02524":null,"SJAG_04208":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005739"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0005739","GO:0032991"],"is_obsolete":false,"name":"mitochondrial intermembrane space protein transporter complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Tim9-Tim10 complex","type":"narrow"}],"termid":"GO:0042719","terms_by_termid":{"GO:0042719":null}}


id: PBO:0090721
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spermidine synthase Srm1","termid":"PBO:0090721"}


id: MONDO:0005449
data:
  {"annotated_genes":["SJAG_03081"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86691],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0859173"}]},"cv_name":"mondo","definition":"A disease involving the conducting system of heart.","definition_xrefs":["MONDO:patterns/location_top"],"direct_ancestors":[{"relation_name":"is_a","term_name":"muscle tissue disorder","termid":"MONDO:0003939"},{"relation_name":"is_a","term_name":"myocardial disorder","termid":"MONDO:0024643"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03081":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"conduction system disorder","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:412576","EFO:0005137","UMLS:C2748542"],"synonyms":[{"name":"conducting system of heart disease","type":"exact"},{"name":"conducting system of heart disease or disorder","type":"exact"},{"name":"disease of conducting system of heart","type":"exact"},{"name":"disease or disorder of conducting system of heart","type":"exact"},{"name":"disorder of conducting system of heart","type":"exact"}],"termid":"MONDO:0005449","terms_by_termid":{"MONDO:0859173":null},"xrefs":{"Monarch":{"xref_id":"0005449"}}}


id: PBO:0001359
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER membrane protein, ICE2 family","termid":"PBO:0001359"}


id: PBO:0044456
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 4 subfamily F member 35, pseudogene","termid":"PBO:0044456"}


id: PBO:0029501
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_vegetative_cell_population_after_spore_germination,_abnormal_germ_tube_morphology_(obsolete_FYPO:0002214)","termid":"PBO:0029501"}


id: MONDO:0017891
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete inherited renal cancer-predisposing syndrome (obsolete MONDO:0017891)","secondary_identifiers":["Orphanet:319328"],"termid":"MONDO:0017891","xrefs":{"Monarch":{"xref_id":"0017891"}}}


id: FYPO:0004021
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells form polar microtubules that are longer than normal. Polar microtubules are the spindle microtubules that come from each pole and overlap at the spindle midzone.","definition_xrefs":["PomBase:mah","GO:0005827"],"direct_ancestors":[{"relation_name":"is_a","term_name":"long microtubules","termid":"FYPO:0000055"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000054"}],"interesting_parent_ids":["FYPO:0002399","FYPO:0001985","FYPO:0000002","FYPO:0000054","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"long polar microtubules","synonyms":[{"name":"elongated polar microtubules","type":"exact"},{"name":"long polar microtubules during mitotic cell cycle","type":"related"},{"name":"long polar microtubules during vegetative growth","type":"exact"}],"termid":"FYPO:0004021"}


id: MONDO:0017513
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"split foot","termid":"MONDO:0017450"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"split foot, unilateral","secondary_identifiers":["icd11.foundation:1995563146","Orphanet:295124"],"termid":"MONDO:0017513","xrefs":{"Monarch":{"xref_id":"0017513"}}}


id: PBO:0070494
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L5 pseudogene 29","termid":"PBO:0070494"}


id: MONDO:0010597
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutamyl ribose-5-phosphate storage disease","secondary_identifiers":["UMLS:C1844440","OMIM:305920","MEDGEN:336179","MESH:C564422"],"synonyms":[{"name":"ADP-ribose Protein hydrolase deficiency","type":"related"},{"name":"glutamyl ribose-5-phosphate storage disease","type":"exact"}],"termid":"MONDO:0010597","xrefs":{"Monarch":{"xref_id":"0010597"}}}


id: FYPO:0000892
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which acetylation of lysine at position 9 of histone H3 occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone acetylation during vegetative growth","termid":"FYPO:0000332"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0002274","FYPO:0002494","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"increased histone H3-K9 acetylation during vegetative growth","synonyms":[{"name":"increased histone H3-K9 acetylation during mitotic cell cycle","type":"related"},{"name":"increased histone H3K9 acetylation during vegetative growth","type":"exact"}],"termid":"FYPO:0000892"}


id: PBO:0063489
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PDZ and LIM domain 1","termid":"PBO:0063489"}


id: PBO:0064498
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase II subunit B","termid":"PBO:0064498"}


id: GO:0071687
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The part of the horsetail nucleus where telomeres cluster under the SPB and that leads horsetail movement. The horsetail nucleus is the elongated nucleus which forms during the rapid oscillatory movement at meiotic prophase; characterized in Schizosaccharomyces pombe.","definition_xrefs":["GOC:vw","PMID:15030757","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete horsetail nucleus leading edge (obsolete GO:0071687)","termid":"GO:0071687"}


id: MONDO:0011714
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"partial lipodystrophy, congenital cataracts, and neurodegeneration syndrome","secondary_identifiers":["GARD:18038","MEDGEN:813897","OMIM:606721","UMLS:C3807567"],"synonyms":[{"name":"LCCNS","type":"related"},{"name":"lipodystrophy, familial partial, type 7","type":"exact"},{"name":"lipodystrophy, partial, with congenital cataracts and neurodegeneration","type":"related"},{"name":"partial lipodystrophy, congenital cataracts, and neurodegeneration syndrome","type":"exact"}],"termid":"MONDO:0011714","xrefs":{"Monarch":{"xref_id":"0011714"}}}


id: MONDO:0014802
data:
  {"annotated_genes":["SJAG_02539","SJAG_03153"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86131,86132],"is_not":false,"summary":null,"term":"MONDO:0014802"}]},"cv_name":"mondo","definition":"Any Cowden disease in which the cause of the disease is a mutation in the SEC23B gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Cowden disease","termid":"MONDO:0016063"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02539":null,"SJAG_03153":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0000426"],"is_obsolete":false,"name":"Cowden syndrome 7","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0081003","MEDGEN:908796","OMIM:616858","UMLS:C4225179","GARD:16470"],"synonyms":[{"name":"CWS7","type":"related"},{"name":"Cowden disease caused by mutation in SEC23B","type":"exact"},{"name":"Cowden syndrome 7","type":"exact"},{"name":"Cowden syndrome type 7","type":"exact"},{"name":"SEC23B Cowden disease","type":"exact"}],"termid":"MONDO:0014802","terms_by_termid":{"MONDO:0014802":null},"xrefs":{"Monarch":{"xref_id":"0014802"}}}


id: PBO:0030665
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_5.8S_rRNA_level","termid":"PBO:0030665"}


id: GO:0002037
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of L-glutamate import into a cell.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of L-glutamate import across plasma membrane","termid":"GO:0002036"},{"relation_name":"is_a","term_name":"negative regulation of organic acid transport","termid":"GO:0032891"},{"relation_name":"is_a","term_name":"negative regulation of transmembrane transport","termid":"GO:0034763"},{"relation_name":"is_a","term_name":"negative regulation of amino acid transport","termid":"GO:0051956"},{"relation_name":"negatively_regulates","term_name":"L-glutamate import across plasma membrane","termid":"GO:0098712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0006810"],"is_obsolete":false,"name":"negative regulation of L-glutamate import across plasma membrane","secondary_identifiers":["GO:1900921"],"synonyms":[{"name":"down regulation of L-glutamate import","type":"exact"},{"name":"down regulation of L-glutamate transport","type":"broad"},{"name":"down regulation of L-glutamate uptake","type":"related"},{"name":"down-regulation of L-glutamate import","type":"exact"},{"name":"down-regulation of L-glutamate transport","type":"broad"},{"name":"down-regulation of L-glutamate uptake","type":"related"},{"name":"downregulation of L-glutamate import","type":"exact"},{"name":"downregulation of L-glutamate transport","type":"broad"},{"name":"downregulation of L-glutamate uptake","type":"related"},{"name":"inhibition of L-glutamate import","type":"narrow"},{"name":"inhibition of L-glutamate transport","type":"narrow"},{"name":"inhibition of L-glutamate uptake","type":"narrow"},{"name":"negative regulation of L-glutamate import","type":"broad"},{"name":"negative regulation of L-glutamate transport","type":"broad"},{"name":"negative regulation of L-glutamate uptake","type":"related"},{"name":"regulation of L-glutamate import","type":"broad"}],"termid":"GO:0002037"}


id: FYPO:0007242
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell polarity phenotype in which the switch from the monopolar to bipolar mode of cell growth (new end take-off; NETO) is abolished in both of the daughter cells formed as a result of the division of a mother cell in which NETO did not occur. Normally, growth begins at the old end and then becomes bipolar with similar timing in both daughter cells.","definition_xrefs":["PMID:31719163","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal NETO in daughter cells","termid":"FYPO:0007240"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005568"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0005568","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abolished NETO in both daughter cells","synonyms":[{"name":"abolished NETO in both daughter cells during mitotic cell cycle","type":"related"},{"name":"abolished NETO in both daughter cells during vegetative growth","type":"exact"},{"name":"abolished activation of bipolar cell growth in both daughter cells","type":"related"},{"name":"abolished cell growth mode switching, monopolar to bipolar, in both daughter cells","type":"exact"},{"name":"abolished new end take-off in both daughter cells","type":"exact"},{"name":"abolished switch from monopolar to bipolar cell growth in both daughter cells","type":"exact"}],"termid":"FYPO:0007242"}


id: GO:2000724
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cardiac vascular smooth muscle cell differentiation.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of vascular associated smooth muscle cell differentiation","termid":"GO:1905065"},{"relation_name":"is_a","term_name":"positive regulation of cardiocyte differentiation","termid":"GO:1905209"},{"relation_name":"is_a","term_name":"regulation of cardiac vascular smooth muscle cell differentiation","termid":"GO:2000722"},{"relation_name":"positively_regulates","term_name":"cardiac vascular smooth muscle cell differentiation","termid":"GO:0060947"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cardiac vascular smooth muscle cell differentiation","synonyms":[{"name":"positive regulation of heart vascular smooth muscle cell differentiation","type":"exact"}],"termid":"GO:2000724"}


id: GO:0000101
data:
  {"annotated_genes":["SJAG_00991","SJAG_04295"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[63706],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903712"},{"annotations":[93661],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1905626"}]},"cv_name":"biological_process","definition":"The directed movement of amino acids containing sulfur (cystine, methionine and their derivatives) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic acid transport","termid":"GO:0046942"},{"relation_name":"is_a","term_name":"nitrogen compound transport","termid":"GO:0071705"},{"relation_name":"is_a","term_name":"sulfur compound transport","termid":"GO:0072348"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00991":null,"SJAG_04295":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"sulfur amino acid transport","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"synonyms":[{"name":"sulphur amino acid transport","type":"exact"}],"termid":"GO:0000101","terms_by_termid":{"GO:1903712":null,"GO:1905626":null}}


id: MOD:00727
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a hydrogen atom of an amino acid residue or of a modifying group with a mannose group through a glycosidic bond,","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycosylated residue","termid":"MOD:00693"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"mannosylated","synonyms":[{"name":"Man","type":"exact"}],"termid":"MOD:00727"}


id: PBO:0070187
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 105 pseudogene","termid":"PBO:0070187"}


id: PBO:0081256
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZNF25 divergent transcript","termid":"PBO:0081256"}


id: PBO:0113399
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative serine hydrolase; likely target of Cyc8p-Tup1p-Rfx1p transcriptional regulation; localizes to cytosol and peroxisomes; similar to S. cerevisiae Fsh1p and Fsh2p and the human candidate tumor suppressor OVCA2","termid":"PBO:0113399"}


id: GO:0160195
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of phospholipase C/protein kinase C signal transduction.","definition_xrefs":["PMID:32033984"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of intracellular signal transduction","termid":"GO:1902532"},{"relation_name":"negatively_regulates","term_name":"phospholipase C/protein kinase C signal transduction","termid":"GO:0141212"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of phospholipase C/protein kinase C signal transduction","synonyms":[{"name":"negative regulation of PLC/PKC signal transduction","type":"exact"}],"termid":"GO:0160195"}


id: PBO:0027724
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_vacuole_fusion_during_cellular_hypotonic_response","termid":"PBO:0027724"}


id: PBO:0087861
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcriptional activator of genes involved in glycolysis; DNA-binding protein that interacts and functions with the transcriptional activator Gcr2p; contains a long intron, which allows multiple RNA and protein isoforms with varying expression levels depending on glucose availability","termid":"PBO:0087861"}


id: PBO:0058238
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4526","termid":"PBO:0058238"}


id: MONDO:0006782
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Blood-filled uterus.","definition_xrefs":["MESH:D006409"],"direct_ancestors":[{"relation_name":"is_a","term_name":"uterine disorder","termid":"MONDO:0002654"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hemometra","secondary_identifiers":["UMLS:C0018948","MEDGEN:6776","DOID:9958","ICD9:621.4","ICD10CM:N85.7","SCTID:38280009"],"synonyms":[{"name":"hematometra","type":"exact"}],"termid":"MONDO:0006782","xrefs":{"Monarch":{"xref_id":"0006782"}}}


id: PBO:0081341
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 141","termid":"PBO:0081341"}


id: PBO:0062791
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"origin recognition complex subunit 5","termid":"PBO:0062791"}


id: PBO:0045090
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"distal-less homeobox 2","termid":"PBO:0045090"}


id: GO:0102312
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-coumaryl-CoA + 2-oxoglutarate + O2 = 2,4-dihydroxycinnamoyl-CoA + succinate + carbon dioxide.","definition_xrefs":["PMID:22168819","GOC:pz","PMID:22169019"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2-oxoglutarate-dependent dioxygenase activity","termid":"GO:0016706"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"4-coumaroyl 2'-hydroxylase activity","secondary_identifiers":["MetaCyc:RXN-12963","RHEA:57868","EC:1.14.11.62"],"termid":"GO:0102312"}


id: FYPO:0003987
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the amount, distribution, or morphology of actin cortical patches is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actin cytoskeleton during vegetative growth","termid":"FYPO:0002398"},{"relation_name":"output_of","term_name":"abnormal actin cortical patch organization","termid":"FYPO:0000790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0004803"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0004803","FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"abnormal actin cortical patch","synonyms":[{"name":"abnormal F-actin patch","type":"exact"},{"name":"abnormal actin cortical patch during mitotic cell cycle","type":"related"},{"name":"abnormal actin cortical patch during vegetative growth","type":"exact"},{"name":"abnormal actin cortical patches","type":"exact"},{"name":"abnormal actin patch","type":"exact"}],"termid":"FYPO:0003987"}


id: MONDO:0018978
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"respiratory system disorder","termid":"MONDO:0005087"},{"relation_name":"is_a","term_name":"IgG4-related disease","termid":"MONDO:0017287"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"IgG4-related mediastinitis","secondary_identifiers":["icd11.foundation:123840075","UMLS:C0264573","GARD:8337","MedDRA:10027074","NORD:1146","MEDGEN:82683","Orphanet:63999","MESH:C536136","icd11.foundation:791747341"],"synonyms":[{"name":"Fibrosing Mediastinitis","type":"exact"},{"name":"fibrosing mediastinitis","type":"exact"},{"name":"idiopathic mediastinal fibrosis","type":"related"},{"name":"mediastinal fibrosis","type":"exact"},{"name":"sclerosing mediastinitis","type":"exact"}],"termid":"MONDO:0018978","xrefs":{"Monarch":{"xref_id":"0018978"}}}


id: MONDO:0017796
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete ameloblastic carcinoma (obsolete MONDO:0017796)","termid":"MONDO:0017796","xrefs":{"Monarch":{"xref_id":"0017796"}}}


id: PBO:0011981
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mutated in Poikiloderma with Neutropenia","termid":"PBO:0011981"}


id: GO:0043315
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of neutrophil degranulation.","definition_xrefs":["ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of myeloid leukocyte mediated immunity","termid":"GO:0002888"},{"relation_name":"is_a","term_name":"positive regulation of leukocyte degranulation","termid":"GO:0043302"},{"relation_name":"is_a","term_name":"regulation of neutrophil degranulation","termid":"GO:0043313"},{"relation_name":"is_a","term_name":"positive regulation of immune response","termid":"GO:0050778"},{"relation_name":"positively_regulates","term_name":"neutrophil degranulation","termid":"GO:0043312"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"positively_regulates","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0016192"],"is_obsolete":false,"name":"positive regulation of neutrophil degranulation","synonyms":[{"name":"activation of neutrophil degranulation","type":"narrow"},{"name":"positive regulation of neutrophil granule exocytosis","type":"exact"},{"name":"stimulation of neutrophil degranulation","type":"narrow"},{"name":"up regulation of neutrophil degranulation","type":"exact"},{"name":"up-regulation of neutrophil degranulation","type":"exact"},{"name":"upregulation of neutrophil degranulation","type":"exact"}],"termid":"GO:0043315"}


id: PBO:0079386
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin beta 2B class IIb","termid":"PBO:0079386"}


id: PBO:0046404
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"enhancer of polycomb homolog 1","termid":"PBO:0046404"}


id: GO:0005649
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete transportin (obsolete GO:0005649)","synonyms":[{"name":"karyopherin-beta2","type":"exact"},{"name":"transportin","type":"exact"}],"termid":"GO:0005649"}


id: GO:0045756
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the activation, by acetate, of the chemical reactions and pathways resulting in the breakdown of acetate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of initiation of acetate catabolic process by acetate","termid":"GO:0045147"},{"relation_name":"is_a","term_name":"positive regulation of acetate catabolic process","termid":"GO:0045754"},{"relation_name":"is_a","term_name":"positive regulation of response to acetate","termid":"GO:1901459"},{"relation_name":"positively_regulates","term_name":"initiation of acetate catabolic process by acetate","termid":"GO:0045146"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"positive regulation of initiation of acetate catabolic process by acetate","synonyms":[{"name":"activation of initiation of acetate catabolic process by acetate","type":"narrow"},{"name":"positive regulation of initiation of acetate breakdown by acetate","type":"exact"},{"name":"positive regulation of initiation of acetate degradation by acetate","type":"exact"},{"name":"stimulation of initiation of acetate catabolic process by acetate","type":"narrow"},{"name":"up regulation of initiation of acetate catabolic process by acetate","type":"exact"},{"name":"up-regulation of initiation of acetate catabolic process by acetate","type":"exact"},{"name":"upregulation of initiation of acetate catabolic process by acetate","type":"exact"}],"termid":"GO:0045756"}


id: PR:Q9UTR9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- asa1 gene.","definition_xrefs":["UniProtKB:Q9UTR9","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ASTRA-associated protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1006.02","synonyms":[{"name":"Spom972h-asa1","type":"exact"}],"termid":"PR:Q9UTR9"}


id: GO:0015477
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A porin of the bacterial outer membrane that forms transmembrane pores and transports relatively large molecules from the external milieu to the periplasm in an energized process. Energizing of transport across the outer membrane requires a heterotrimeric complex of proteins, the TonB-ExbB-ExbD complex, or in some cases, the TolA-TolQ-TolR complex. Energizing requires proton motive force across the cytoplasmic membrane.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729","TC:1.B.13.-.-"],"gene_count":0,"genotype_count":0,"name":"obsolete receptor porin activity (obsolete GO:0015477)","synonyms":[{"name":"receptor porin activity","type":"exact"}],"termid":"GO:0015477"}


id: GO:0099531
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The pathway leading to secretion of a neurotransmitter from the presynapse as part of synaptic transmission.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system process","termid":"GO:0050877"},{"relation_name":"part_of","term_name":"chemical synaptic transmission","termid":"GO:0007268"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"presynaptic process involved in chemical synaptic transmission","termid":"GO:0099531"}


id: PBO:0072819
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SAMD12 antisense RNA 1","termid":"PBO:0072819"}


id: PBO:0080179
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"voltage dependent anion channel 2","termid":"PBO:0080179"}


id: MONDO:0004034
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A lymphoma that involves the eye.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ocular cancer","termid":"MONDO:0002236"},{"relation_name":"is_a","term_name":"lymphoma","termid":"MONDO:0005062"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0004992","MONDO:0005328"],"is_obsolete":false,"name":"eye lymphoma","secondary_identifiers":["NCIT:C35690","UMLS:C0730306","DOID:6903","MEDGEN:1788822"],"synonyms":[{"name":"eye lymphoma","type":"exact"},{"name":"eyeball of camera-type eye lymphoma","type":"exact"},{"name":"lymphoma of eyeball of camera-type eye","type":"exact"},{"name":"primary eye lymphoma","type":"exact"}],"termid":"MONDO:0004034","xrefs":{"Monarch":{"xref_id":"0004034"}}}


id: PBO:0039301
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ALG14 UDP-N-acetylglucosaminyltransferase subunit","termid":"PBO:0039301"}


id: PBO:0029983
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_prospore_membrane_formation","termid":"PBO:0029983"}


id: GO:0043921
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which a host organism modulates the frequency, rate or extent of viral transcription.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation by host of viral transcription","termid":"GO:0043922"},{"relation_name":"is_a","term_name":"negative regulation by host of viral process","termid":"GO:0044793"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"modulation by host of viral transcription","synonyms":[{"name":"regulation by host of viral transcription","type":"exact"},{"name":"regulation of viral transcription by host","type":"exact"}],"termid":"GO:0043921"}


id: PBO:0029679
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_RNA_level_during_nitrogen_starvation","termid":"PBO:0029679"}


id: GO:0003119
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of reductions in the diameter of blood vessels as a result of epinephrine released by nerve endings.","definition_xrefs":["GOC:mtg_cardio"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of vasoconstriction by epinephrine","termid":"GO:0003115"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of vasoconstriction by neuronal epinephrine","synonyms":[{"name":"regulation of vasoconstriction by neuronal adrenaline","type":"exact"}],"termid":"GO:0003119"}


id: MONDO:0000590
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A hypersensitivity reaction type II disease that involves the peripheral nervous system.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autoimmune disorder of the nervous system","termid":"MONDO:0002977"},{"relation_name":"is_a","term_name":"peripheral nervous system disorder","termid":"MONDO:0003620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"autoimmune disorder of peripheral nervous system","secondary_identifiers":["DOID:0060033"],"synonyms":[{"name":"peripheral nervous system autoimmune disease","type":"exact"},{"name":"peripheral nervous system hypersensitivity reaction type II disease","type":"exact"}],"termid":"MONDO:0000590","xrefs":{"Monarch":{"xref_id":"0000590"}}}


id: PBO:0080944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger B-box domain containing","termid":"PBO:0080944"}


id: MONDO:0957560
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hearing loss, noise-induced, susceptibility to","secondary_identifiers":["MEDGEN:414426","OMIM:613035","UMLS:C2751629"],"termid":"MONDO:0957560","xrefs":{"Monarch":{"xref_id":"0957560"}}}


id: PBO:0070240
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 180 pseudogene","termid":"PBO:0070240"}


id: MONDO:0001744
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The sudden increase of intraocular pressure, resulting in pain and an abrupt decrease in visual acuity.","definition_xrefs":["NCIT:C34639"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glaucoma","termid":"MONDO:0005041"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"angle-closure glaucoma","secondary_identifiers":["MEDGEN:6610","DOID:13550","MESH:D015812","SCTID:392291006","UMLS:C0017605"],"synonyms":[{"name":"ACG - angle-closure glaucoma","type":"exact"},{"name":"Narrow cleft glaucoma","type":"exact"},{"name":"angle closure glaucoma","type":"exact"},{"name":"primary open-angle glaucoma with narrow angles","type":"exact"}],"termid":"MONDO:0001744","xrefs":{"Monarch":{"xref_id":"0001744"}}}


id: MONDO:0017384
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A widespread acute rash characterized by fever and multiple small pustules on a reddish background.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dermatitis","termid":"MONDO:0002406"},{"relation_name":"is_a","term_name":"severe cutaneous adverse reaction","termid":"MONDO:0005594"},{"relation_name":"is_a","term_name":"toxic dermatosis","termid":"MONDO:0017396"},{"relation_name":"is_a","term_name":"acute disease","termid":"MONDO:0020683"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"acute generalized exanthematous pustulosis","secondary_identifiers":["NCIT:C112122","Orphanet:293173","MEDGEN:209091","ICD9:709.8","GARD:21164","SCTID:702617007","UMLS:C0877055","MedDRA:10048799","MESH:D056150"],"synonyms":[{"name":"AGEP","type":"exact"},{"name":"pustular drug eruption","type":"exact"},{"name":"toxic pustuloderma","type":"exact"}],"termid":"MONDO:0017384","xrefs":{"Monarch":{"xref_id":"0017384"}}}


id: PBO:0081308
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 90 pseudogene 3","termid":"PBO:0081308"}


id: PBO:0061573
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neurotrophin 6 alpha (pseudogene)","termid":"PBO:0061573"}


id: PBO:0003076
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptionally regulated by Tup11","termid":"PBO:0003076"}


id: GO:1903941
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of respiratory gaseous exchange.","definition_xrefs":["PMID:22819705","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of respiratory gaseous exchange","termid":"GO:0043576"},{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"negatively_regulates","term_name":"respiratory gaseous exchange by respiratory system","termid":"GO:0007585"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of respiratory gaseous exchange","synonyms":[{"name":"down regulation of respiratory gaseous exchange","type":"exact"},{"name":"down-regulation of respiratory gaseous exchange","type":"exact"},{"name":"downregulation of respiratory gaseous exchange","type":"exact"},{"name":"inhibition of respiratory gaseous exchange","type":"narrow"}],"termid":"GO:1903941"}


id: PBO:0064692
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylprolyl isomerase A pseudogene 28","termid":"PBO:0064692"}


id: GO:0048308
data:
  {"annotated_genes":["SJAG_04315","SJAG_02848"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[103108],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000001"},{"annotations":[107054],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045033"}]},"cv_name":"biological_process","definition":"The partitioning of organelles between daughter cells at cell division.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle organization","termid":"GO:0006996"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02848":null,"SJAG_04315":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"organelle inheritance","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0048308","terms_by_termid":{"GO:0000001":null,"GO:0045033":null}}


id: MONDO:0014056
data:
  {"annotated_genes":["SJAG_05979"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87598],"is_not":false,"summary":null,"term":"MONDO:0014056"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"susceptibility to familial cutaneous melanoma","termid":"MONDO:0024462"},{"relation_name":"is_a","term_name":"glioma susceptibility","termid":"MONDO:0100242"}],"gene_count":1,"genes_by_uniquename":{"SJAG_05979":null},"genotype_count":0,"is_obsolete":false,"name":"melanoma, cutaneous malignant, susceptibility to, 9","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:767488","UMLS:C3554574","OMIM:615134"],"synonyms":[{"name":"CMM9","type":"related"},{"name":"melanoma, cutaneous malignant, 9","type":"exact"},{"name":"melanoma, cutaneous malignant, susceptibility to, 9","type":"exact"},{"name":"melanoma, cutaneous malignant, susceptibility to, type 9","type":"exact"},{"name":"susceptibility to cutaneous malignant melanoma 9","type":"related"}],"termid":"MONDO:0014056","terms_by_termid":{"MONDO:0014056":null},"xrefs":{"Monarch":{"xref_id":"0014056"}}}


id: GO:0102054
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-maleylpyruvate(2-) + H2O = H+ + maleate(2-) + pyruvate.","definition_xrefs":["PMID:7400101","GOC:pz","RHEA:47956"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances","termid":"GO:0016823"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0003824"],"is_obsolete":false,"name":"maleylpyruvate hydrolase activity","secondary_identifiers":["MetaCyc:RXN-10447","EC:3.7.1.23"],"termid":"GO:0102054"}


id: FYPO:0005852
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the biotinylation of one or more specific proteins, or of specific protein sites, occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein modification during vegetative growth","termid":"FYPO:0000545"},{"relation_name":"is_a","term_name":"abnormal protein biotinylation during vegetative growth","termid":"FYPO:0005851"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0002274","FYPO:0002494","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"decreased protein biotinylation during vegetative growth","synonyms":[{"name":"decreased protein biotinylation during mitotic cell cycle","type":"related"},{"name":"reduced protein biotinylation during vegetative growth","type":"exact"}],"termid":"FYPO:0005852"}


id: PBO:0046533
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ERRFI1 divergent transcript","termid":"PBO:0046533"}


id: GO:0052235
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a motile cell or organism towards a lower concentration of environmental oxygen within a second organism, where the two organisms are in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete negative aerotaxis in other organism involved in symbiotic interaction (obsolete GO:0052235)","synonyms":[{"name":"negative aerotaxis in other organism during symbiotic interaction","type":"related"},{"name":"negative aerotaxis within other organism during symbiotic interaction","type":"exact"}],"termid":"GO:0052235"}


id: PBO:0048967
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycosylphosphatidylinositol anchor attachment 1 pseudogene 2","termid":"PBO:0048967"}


id: GO:0033555
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a multicellular organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to stress","termid":"GO:0006950"},{"relation_name":"is_a","term_name":"multicellular organismal process","termid":"GO:0032501"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"multicellular organismal response to stress","termid":"GO:0033555"}


id: GO:0016088
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A polypeptide hormone that stimulates glucose uptake by muscle and adipose tissue, and promotes glycogenesis, lipogenesis and the synthesis of proteins and nucleic acids.","definition_xrefs":["ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete insulin (obsolete GO:0016088)","synonyms":[{"name":"insulin","type":"exact"}],"termid":"GO:0016088"}


id: GO:0106361
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: dTDP-beta-L-rhamnose + L-arginyl-[protein] = dTDP + H+ + N(omega)-(L-rhamnosyl)-L-arginyl-[protein].","definition_xrefs":["PMID:25686373","PMID:26060278","RHEA:66692","GOC:sp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glucosyltransferase activity","termid":"GO:0046527"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016757","GO:0016740","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"protein-arginine rhamnosyltransferase activity","termid":"GO:0106361"}


id: SO:0000790
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute describing a feature that is invalidated.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"status","termid":"SO:0000905"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"invalidated","termid":"SO:0000790"}


id: PBO:0045332
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DOCK8 antisense RNA 1","termid":"PBO:0045332"}


id: PBO:0047071
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 131 member C2, pseudogene","termid":"PBO:0047071"}


id: MONDO:0002939
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A basal cell carcinoma that contains large amounts of melanin. The melanin is produced by symbiotic nontumoral proliferating melanocytes. - 2002.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"skin basal cell carcinoma","termid":"MONDO:0005341"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0005093"],"is_obsolete":false,"name":"skin pigmented basal cell carcinoma","secondary_identifiers":["MEDGEN:237149","DOID:4282","SCTID:403909004","NCIT:C9359","UMLS:C1368275"],"synonyms":[{"name":"pigmented basal cell carcinoma","type":"exact"},{"name":"skin pigmented basal cell carcinoma","type":"exact"}],"termid":"MONDO:0002939","xrefs":{"Monarch":{"xref_id":"0002939"}}}


id: FYPO:0007460
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the size, shape, or structure of the portion of the nuclear envelope enclosing the midzone of the mitotic nuclear bridge is abnormal. The nuclear bridge is a narrow constricted region of the nucleus that forms around the mitotic spindle during anaphase.","definition_xrefs":["PMID:32848252","PomBase:mah","GO:0140510"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nuclear envelope morphology at mitotic nuclear bridge","termid":"FYPO:0007459"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002403"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0002403","FYPO:0001320"],"is_obsolete":false,"name":"abnormal nuclear envelope morphology at mitotic nuclear bridge midzone","synonyms":[{"name":"abnormal nuclear envelope morphology at mitotic nuclear bridge midzone during mitotic cell cycle","type":"related"},{"name":"abnormal nuclear envelope morphology at mitotic nuclear bridge midzone during vegetative growth","type":"exact"}],"termid":"FYPO:0007460"}


id: PBO:0074423
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small integral membrane protein 22","termid":"PBO:0074423"}


id: MONDO:0016058
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"combined dystonia","termid":"MONDO:0020065"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0003441"}],"interesting_parent_ids":["MONDO:0003441"],"is_obsolete":false,"name":"paroxysmal dystonia","secondary_identifiers":["UMLS:C0393588","MEDGEN:97951","icd11.foundation:2047715743","ICD9:333.99","Orphanet:200037","SCTID:230310003","GARD:20340"],"termid":"MONDO:0016058","xrefs":{"Monarch":{"xref_id":"0016058"}}}


id: PBO:0082056
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3'-5' RNA exonuclease; involved in 3'-end processing of U4 and U5 snRNAs, 5S and 5.8S rRNAs, and RNase P and RNase MRP RNA; localized to mitochondria and null suppresses escape of mtDNA to nucleus in yme1 yme2 mutants; RNase D exonuclease","termid":"PBO:0082056"}


id: GO:0140233
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transmembrane transfer of a cation by a channel that opens when intracellular cAMP has been bound by the channel complex or one of its constituent parts, to regulate the postsynaptic membrane potential.","definition_xrefs":["GOC:pvn"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellularly cAMP-activated cation channel activity","termid":"GO:0005222"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"intracellular cAMP-activated cation channel activity involved in regulation of postsynaptic membrane potential","synonyms":[{"name":"intracellular cAMP activated cation channel activity involved in regulation of postsynaptic membrane potential","type":"exact"}],"termid":"GO:0140233"}


id: PBO:0048237
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G antigen 6","termid":"PBO:0048237"}


id: PBO:0030368
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_origin_firing_efficiency","termid":"PBO:0030368"}


id: GO:0047811
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-alanine + L-glutamine = gamma-L-glutamyl-D-alanine + NH4.","definition_xrefs":["RHEA:23556"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoacyltransferase activity","termid":"GO:0016755"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016746","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"D-alanine gamma-glutamyltransferase activity","secondary_identifiers":["EC:2.3.2.14","KEGG_REACTION:R01149","MetaCyc:D-ALANINE-GAMMA-GLUTAMYLTRANSFERASE-RXN"],"synonyms":[{"name":"D-alanine g-glutamyltransferase activity","type":"exact"}],"termid":"GO:0047811"}


id: PBO:0053053
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LARP7 pseudogene 4","termid":"PBO:0053053"}


id: GO:0071820
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an N-box, a DNA motif with the consensus sequence CACNAG that is found in the promoters of genes expressed preferentially at synapses.","definition_xrefs":["GOC:yaf","PMID:11498047"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II cis-regulatory region sequence-specific DNA binding","termid":"GO:0000978"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003677"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0000976"}],"interesting_parent_ids":["GO:0005488","GO:0003677","GO:0000976","GO:0003674"],"is_obsolete":false,"name":"N-box binding","synonyms":[{"name":"N box binding","type":"exact"},{"name":"N-box promoter binding","type":"exact"}],"termid":"GO:0071820"}


id: SO:0000835
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A part of a primary transcript.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transcript_region","termid":"SO:0000833"},{"relation_name":"part_of","term_name":"primary_transcript","termid":"SO:0000185"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"primary_transcript_region","synonyms":[{"name":"primary transcript region","type":"exact"}],"termid":"SO:0000835"}


id: MONDO:0958279
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"megalencephaly-polydactyly syndrome","secondary_identifiers":["OMIM:620748","UMLS:C5935591","MEDGEN:1855924"],"termid":"MONDO:0958279","xrefs":{"Monarch":{"xref_id":"0958279"}}}


id: GO:1901579
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of alkane biosynthetic process.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of biosynthetic process","termid":"GO:0009891"},{"relation_name":"is_a","term_name":"regulation of alkane biosynthetic process","termid":"GO:1901577"},{"relation_name":"positively_regulates","term_name":"alkane biosynthetic process","termid":"GO:0043447"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of alkane biosynthetic process","synonyms":[{"name":"activation of alkane anabolism","type":"exact"},{"name":"activation of alkane biosynthesis","type":"exact"},{"name":"activation of alkane biosynthetic process","type":"narrow"},{"name":"activation of alkane formation","type":"exact"},{"name":"activation of alkane synthesis","type":"exact"},{"name":"positive regulation of alkane anabolism","type":"exact"},{"name":"positive regulation of alkane biosynthesis","type":"exact"},{"name":"positive regulation of alkane formation","type":"exact"},{"name":"positive regulation of alkane synthesis","type":"exact"},{"name":"up regulation of alkane anabolism","type":"exact"},{"name":"up regulation of alkane biosynthesis","type":"exact"},{"name":"up regulation of alkane biosynthetic process","type":"exact"},{"name":"up regulation of alkane formation","type":"exact"},{"name":"up regulation of alkane synthesis","type":"exact"},{"name":"up-regulation of alkane anabolism","type":"exact"},{"name":"up-regulation of alkane biosynthesis","type":"exact"},{"name":"up-regulation of alkane biosynthetic process","type":"exact"},{"name":"up-regulation of alkane formation","type":"exact"},{"name":"up-regulation of alkane synthesis","type":"exact"},{"name":"upregulation of alkane anabolism","type":"exact"},{"name":"upregulation of alkane biosynthesis","type":"exact"},{"name":"upregulation of alkane biosynthetic process","type":"exact"},{"name":"upregulation of alkane formation","type":"exact"},{"name":"upregulation of alkane synthesis","type":"exact"}],"termid":"GO:1901579"}


id: GO:0001514
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The incorporation of selenocysteine into a peptide; uses a special tRNA that recognizes the UGA codon as selenocysteine, rather than as a termination codon. Selenocysteine is synthesized from serine before its incorporation; it is not a posttranslational modification of peptidyl-cysteine.","definition_xrefs":["RESID:AA0022"],"direct_ancestors":[{"relation_name":"is_a","term_name":"translational readthrough","termid":"GO:0006451"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"selenocysteine incorporation","termid":"GO:0001514"}


id: GO:0032692
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-1 production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokine production","termid":"GO:0001818"},{"relation_name":"is_a","term_name":"regulation of interleukin-1 production","termid":"GO:0032652"},{"relation_name":"negatively_regulates","term_name":"interleukin-1 production","termid":"GO:0032612"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"negative regulation of interleukin-1 production","secondary_identifiers":["GO:0050711","GO:0045361"],"synonyms":[{"name":"down regulation of interleukin-1 production","type":"exact"},{"name":"down-regulation of interleukin-1 production","type":"exact"},{"name":"downregulation of interleukin-1 production","type":"exact"},{"name":"inhibition of interleukin-1 production","type":"narrow"},{"name":"negative regulation of IL-1 production","type":"exact"},{"name":"negative regulation of interleukin-1 biosynthetic process","type":"narrow"},{"name":"negative regulation of interleukin-1 secretion","type":"narrow"}],"termid":"GO:0032692"}


id: PBO:0063812
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphorylase kinase catalytic subunit gamma 1 pseudogene 4","termid":"PBO:0063812"}


id: GO:0141176
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A small RNA-based gene silencing process in which Piwi-associated RNAs (piRNAs) guide de novo DNA methylation. This results in a heterochromatin assembly, a chromatin conformation that is refractory to transcription.","definition_xrefs":["PMID:32674113","PMID:38359823"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA methylation-dependent constitutive heterochromatin formation","termid":"GO:0006346"},{"relation_name":"is_a","term_name":"piRNA-mediated heterochromatin formation","termid":"GO:0140966"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0006325"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0006325","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"gene silencing by piRNA-directed DNA methylation","termid":"GO:0141176"}


id: FYPO:0001025
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which mitotic cell cycle progression is arrested under conditions where arrest normally occurs.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitotic cell cycle arrest phenotype","termid":"FYPO:0004040"},{"relation_name":"is_a","term_name":"normal cell cycle process","termid":"FYPO:0006915"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normally arrested mitotic cell cycle progression","synonyms":[{"name":"normal mitotic cell cycle arrest","type":"exact"}],"termid":"FYPO:0001025"}


id: PBO:0033821
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Supressor of Rad Wee1","termid":"PBO:0033821"}


id: PBO:0000639
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor TFIID complex subunit Taf4 (predicted)","termid":"PBO:0000639"}


id: PBO:0040258
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy related 12 pseudogene 1","termid":"PBO:0040258"}


id: MONDO:0010019
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"selective IgA deficiency disease","termid":"MONDO:0001341"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"secretory component deficiency","secondary_identifiers":["ICD9:279.03","MESH:C562869","UMLS:C0398709","OMIM:269650","SCTID:234554004","MEDGEN:140769"],"synonyms":[{"name":"IgA deficiency, secretory","type":"related"},{"name":"secretory component deficiency","type":"exact"}],"termid":"MONDO:0010019","xrefs":{"Monarch":{"xref_id":"0010019"}}}


id: FYECO:0000368
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which tamoxifen was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ tamoxifen","termid":"FYECO:0000368"}


id: GO:0008034
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binding to a conjugated, water-soluble protein in which the nonprotein group consists of a lipid or lipids.","definition_xrefs":["ISBN:0198506732","GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete lipoprotein binding (obsolete GO:0008034)","synonyms":[{"name":"lipoprotein binding","type":"exact"}],"termid":"GO:0008034"}


id: PBO:0016531
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lanosterol synthase Erg7","termid":"PBO:0016531"}


id: GO:0043301
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the rate of leukocyte degranulation.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of immune effector process","termid":"GO:0002698"},{"relation_name":"is_a","term_name":"regulation of leukocyte degranulation","termid":"GO:0043300"},{"relation_name":"is_a","term_name":"negative regulation of regulated secretory pathway","termid":"GO:1903306"},{"relation_name":"negatively_regulates","term_name":"leukocyte degranulation","termid":"GO:0043299"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"negatively_regulates","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0016192"],"is_obsolete":false,"name":"negative regulation of leukocyte degranulation","synonyms":[{"name":"down regulation of leukocyte degranulation","type":"exact"},{"name":"down-regulation of leukocyte degranulation","type":"exact"},{"name":"downregulation of leukocyte degranulation","type":"exact"},{"name":"inhibition of leukocyte degranulation","type":"narrow"},{"name":"negative regulation of immune cell degranulation","type":"exact"},{"name":"negative regulation of leucocyte degranulation","type":"exact"}],"termid":"GO:0043301"}


id: GO:0032017
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of Ran protein signal transduction.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of Ran protein signal transduction (obsolete GO:0032017)","synonyms":[{"name":"activation of Ran protein signal transduction","type":"narrow"},{"name":"stimulation of Ran protein signal transduction","type":"narrow"},{"name":"up regulation of Ran protein signal transduction","type":"exact"},{"name":"up-regulation of Ran protein signal transduction","type":"exact"},{"name":"upregulation of Ran protein signal transduction","type":"exact"}],"termid":"GO:0032017"}


id: RO:0002467
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","direct_ancestors":[{"relation_name":"is_a","term_name":"is_symbiosis","termid":"RO:0002465"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"is_mutualism","termid":"RO:0002467"}


id: GO:0006557
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of S-adenosylmethioninamine, (5-deoxy-5-adenosyl)(3-aminopropyl) methylsulfonium salt.","definition_xrefs":["GOC:mah","MetaCyc:S-ADENOSYLMETHIONINAMINE"],"gene_count":0,"genotype_count":0,"name":"obsolete S-adenosylmethioninamine biosynthetic process (obsolete GO:0006557)","synonyms":[{"name":"S-adenosylmethioninamine anabolism","type":"exact"},{"name":"S-adenosylmethioninamine biosynthesis","type":"exact"},{"name":"S-adenosylmethioninamine formation","type":"exact"},{"name":"S-adenosylmethioninamine synthesis","type":"exact"}],"termid":"GO:0006557"}


id: MOD:00118
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cross-links an L-cysteine residue and an L-histidine residue by a thioether bond to form 2'-(S-L-cysteinyl)-L-histidine.","definition_xrefs":["RESID:AA0109","PubMed:6210696","DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thioether crosslinked residues","termid":"MOD:00687"},{"relation_name":"is_a","term_name":"crosslinked L-histidine residue","termid":"MOD:02048"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"2'-(S-L-cysteinyl)-L-histidine","synonyms":[{"name":"(2R)-2-amino-3-[(4-[(2S)-2-amino-2-carboxyethyl]-1H-imidazol-2-yl)sulfanyl]propanoic acid","type":"exact"},{"name":"(2S)-2-amino-3-[2-([(2R)-2-amino-2-carboxyethyl]sulfanyl)-1H-imidazol-4-yl]propanoic acid","type":"exact"},{"name":"2'-(L-cystein-S-yl)-L-histidine","type":"exact"},{"name":"CROSSLNK 2'-(S-cysteinyl)-histidine (Cys-His)","type":"exact"},{"name":"S-(2'-histidyl)cysteine","type":"exact"},{"name":"S-(2-histidyl)- (crosslinked to cysteine)","type":"exact"},{"name":"XLNK-SCys-2'His","type":"exact"}],"termid":"MOD:00118"}


id: MONDO:0005019
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A variant of systemic scleroderma characterized by sclerosis of the skin, Raynaud phenomenon, and organ involvement, including pulmonary fibrosis, renal disease, and gastrointestinal tract involvement.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"systemic sclerosis","termid":"MONDO:0005100"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005093"],"is_obsolete":false,"name":"diffuse scleroderma","secondary_identifiers":["UMLS:C1258104","DOID:1580","GARD:7727","MEDGEN:219839","MESH:D045743","EFO:0000404","NCIT:C116791"],"synonyms":[{"name":"diffuse systemic sclerosis","type":"exact"},{"name":"systemic sclerosis, diffuse","type":"exact"}],"termid":"MONDO:0005019","xrefs":{"Monarch":{"xref_id":"0005019"}}}


id: PBO:0011518
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial trancriptional repressor protein BolA domain (predicted)","termid":"PBO:0011518"}


id: MONDO:0010184
data:
  {"annotated_genes":["SJAG_01199"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87011],"is_not":false,"summary":null,"term":"MONDO:0010184"}]},"cv_name":"mondo","definition":"A form of methylmalonic acidemia with homocystinuria, an inborn error of vitamin B12 (cobalamin) metabolism characterized by megaloblastic anemia, lethargy, failure to thrive, developmental delay, intellectual deficit and seizures. cblC type methylmalonic acidemia with homocystinuria is caused by mutations in the MMACHC gene (1p36.3) and is transmitted in an autosomal recessive manner.","definition_xrefs":["Orphanet:79282"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methylmalonic aciduria and homocystinuria","termid":"MONDO:0016826"},{"relation_name":"is_a","term_name":"hereditary peripheral neuropathy","termid":"MONDO:0020127"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01199":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"},{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0002280"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0002280","MONDO:0005570","MONDO:0005066","MONDO:0005244","MONDO:0004736"],"is_obsolete":false,"name":"methylmalonic aciduria and homocystinuria type cblC","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:341256","SCTID:74653006","NANDO:1201040","GARD:12128","NANDO:2201107","NCIT:C142174","UMLS:C1848561","DOID:0050715","OMIM:277400"],"synonyms":[{"name":"MAHCC","type":"related"},{"name":"cblC","type":"related"},{"name":"cblC - cobalamin locus c","type":"related"},{"name":"cblC defect","type":"exact"},{"name":"cblC methylmalonic acidemia and homocystinuria","type":"related"},{"name":"cobalamin C defect","type":"exact"},{"name":"cobalamin C deficiency","type":"exact"},{"name":"cobalamin c disease","type":"exact"},{"name":"cobalamin locus c variant","type":"related"},{"name":"combined defect in adenosylcobalamin and methylcobalamin synthesis, type cblC","type":"exact"},{"name":"methylmalonic acidemia and homocystinuria cblC","type":"related"},{"name":"methylmalonic acidemia and homocystinuria, cblC type","type":"related"},{"name":"methylmalonic acidemia with homocystinuria type cblC","type":"related"},{"name":"methylmalonic acidemia with homocystinuria, type cblC","type":"related"},{"name":"methylmalonic aciduria and homocystinuria cblC","type":"related"},{"name":"methylmalonic aciduria and homocystinuria type cblC","type":"exact"},{"name":"methylmalonic aciduria and homocystinuria, cblC type","type":"related"},{"name":"methylmalonic aciduria and homocystinuria, cblC type, digenic","type":"related"},{"name":"methylmalonic aciduria and homocystinuria, vitamin B12-responsive","type":"related"},{"name":"methylmalonic aciduria with homocystinuria, type cblC","type":"exact"},{"name":"vitamin B12 metabolic defect with combined deficiency of methylmalonyl-Coa mutase and homocysteine:methyltetrahydrofolate methyltransferase","type":"related"}],"termid":"MONDO:0010184","terms_by_termid":{"MONDO:0010184":null},"xrefs":{"Monarch":{"xref_id":"0010184"}}}


id: GO:0031967
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id: GO:1901638
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id: GO:0106226
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id: GO:0050198
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id: PBO:0053601
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id: RO:0002245
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id: MONDO:0019252
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id: PBO:0040164
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id: PBO:0051432
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id: PBO:0035810
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id: GO:0042612
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id: PBO:0049314
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id: GO:0007531
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id: PBO:0028531
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id: GO:0070452
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