# terms

id: GO:0009008
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of a methyl group to a DNA molecule.","definition_xrefs":["GOC:jl","PMID:7862522","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"},{"relation_name":"is_a","term_name":"catalytic activity, acting on DNA","termid":"GO:0140097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0016740","GO:0016741","GO:0140097","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"DNA-methyltransferase activity","secondary_identifiers":["Reactome:R-HSA-5227490"],"synonyms":[{"name":"DNA methylase","type":"broad"},{"name":"DNA methyltransferase activity","type":"exact"},{"name":"DNA transmethylase activity","type":"exact"},{"name":"Type II DNA methylase","type":"related"},{"name":"deoxyribonucleate methylase activity","type":"exact"},{"name":"deoxyribonucleate methyltransferase activity","type":"exact"},{"name":"deoxyribonucleic acid methylase activity","type":"exact"},{"name":"deoxyribonucleic acid methyltransferase activity","type":"exact"},{"name":"deoxyribonucleic acid modification methylase activity","type":"related"}],"termid":"GO:0009008"}


id: PBO:0017056
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ars Binding Protein","termid":"PBO:0017056"}


id: SO:0000400
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute describes a quality of sequence.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sequence_attribute","synonyms":[{"name":"sequence attribute","type":"exact"}],"termid":"SO:0000400"}


id: GO:0051558
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving phlobaphenes, red pigments with oligomeric or polymeric structure derived from the flavonoid intermediate flavan-4-ols.","definition_xrefs":["PMID:11402179"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pigment metabolic process","termid":"GO:0042440"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"phlobaphene metabolic process","synonyms":[{"name":"phlobaphene metabolism","type":"exact"}],"termid":"GO:0051558"}


id: PBO:0003091
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA cleavage factor complex subunit (predicted)","termid":"PBO:0003091"}


id: PR:P40996
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- scd2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P40996"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein scd2/ral3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22H10.07","synonyms":[{"name":"Spom972h-scd2","type":"exact"}],"termid":"PR:P40996"}


id: GO:1905805
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The disaggregation of an excitatory synapse into its constituent components.","definition_xrefs":["GO_REF:0000079","GOC:TermGenie","PMID:27779093"],"direct_ancestors":[{"relation_name":"is_a","term_name":"synapse pruning","termid":"GO:0098883"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"excitatory synapse pruning","synonyms":[{"name":"synapse clearance","type":"broad"},{"name":"synapse disassembly","type":"broad"},{"name":"synapse elimination","type":"broad"},{"name":"synapse removal","type":"broad"}],"termid":"GO:1905805"}


id: MONDO:0001704
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign or malignant neoplasm that arises from the vagina and is characterized by the presence of neoplastic glandular epithelial cells. Representative examples include adenoma, endometrioid adenocarcinoma, and clear cell adenocarcinoma.","definition_xrefs":["NCIT:C40250"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vaginal neoplasm","termid":"MONDO:0021050"},{"relation_name":"is_a","term_name":"glandular cell neoplasm","termid":"MONDO:0024276"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vaginal glandular neoplasm","secondary_identifiers":["UMLS:C1519921","DOID:134","MEDGEN:275574"],"synonyms":[{"name":"vagina glandular cell neoplasm","type":"exact"},{"name":"vaginal glandular neoplasm","type":"exact"},{"name":"vaginal glandular tumor","type":"exact"},{"name":"vaginal glandular tumour","type":"exact"}],"termid":"MONDO:0001704","xrefs":{"Monarch":{"xref_id":"0001704"}}}


id: PBO:0069731
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1012, pseudogene","termid":"PBO:0069731"}


id: _global:positively_regulates_characteristic
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"A relationship that holds between a process and a characteristic in which process (P) positively regulates characteristic (C) iff: P results in an increase in the intensity or magnitude of C.","direct_ancestors":[{"relation_name":"is_a","term_name":"regulates_characteristic","termid":"_global:regulates_characteristic"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"positively_regulates_characteristic","secondary_identifiers":["RO:0019001"],"termid":"_global:positively_regulates_characteristic"}


id: PBO:0011451
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"no annotated human ortholog, is pseudogene in human, activity present in mice","termid":"PBO:0011451"}


id: MONDO:0013881
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A life-threatening multiorgan disorder which develops in the first months of life, presenting with respiratory distress and proteinuria in the nephrotic range, and leading to severe interstitial lung disease and renal failure. Some patients additionally display cutaneous alterations, ranging from blistering and skin erosions to an epidermolysis bullosa-like phenotype, with toe nail dystrophy and sparse hair.","definition_xrefs":["Orphanet:306504"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"respiratory system disorder","termid":"MONDO:0005087"},{"relation_name":"excluded_subClassOf","term_name":"primary interstitial lung disease specific to childhood","termid":"MONDO:0017015"},{"relation_name":"excluded_subClassOf","term_name":"obsolete disease of glomerular basement membrane (obsolete MONDO:0019723)","termid":"MONDO:0019723"},{"relation_name":"is_a","term_name":"junctional epidermolysis bullosa","termid":"MONDO:0017612"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"epidermolysis bullosa, junctional 7, with interstitial lung disease and nephrotic syndrome","secondary_identifiers":["UMLS:C4518785","OMIM:614748","MEDGEN:1388385","GARD:17377"],"synonyms":[{"name":"ILNEB","type":"related"},{"name":"JEB with respiratory and renal involvement","type":"exact"},{"name":"JEB-RR","type":"exact"},{"name":"congenital ILNEB syndrome","type":"exact"},{"name":"congenital NEP syndrome","type":"exact"},{"name":"congenital interstitial lung disease-nephrotic syndrome-epidermolysis bullosa syndrome","type":"exact"},{"name":"congenital nephrotic syndrome - interstitial lung disease - epidermolysis bullosa syndrome","type":"exact"},{"name":"congenital nephrotic syndrome-epidermolysis bullosa-pulmonary disease syndrome","type":"exact"},{"name":"interstitial lung disease, nephrotic syndrome, and epidermolysis bullosa, congenital","type":"related"},{"name":"junctional epidermolysis bullosa with respiratory and renal involvement","type":"related"}],"termid":"MONDO:0013881","xrefs":{"Monarch":{"xref_id":"0013881"}}}


id: GO:0019573
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of D-arabinose to form D-xylulose 5-phosphate. D-arabinose is converted into D-ribulose, which is phosphorylated to D-ribulose-5-phosphate, which is isomerized to give D-xylulose-5-phosphate.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"D-arabinose catabolic process","termid":"GO:0019571"},{"relation_name":"is_a","term_name":"D-xylulose 5-phosphate metabolic process","termid":"GO:0051167"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0005975"],"is_obsolete":false,"name":"D-arabinose catabolic process to D-xylulose 5-phosphate","secondary_identifiers":["MetaCyc:DARABCAT-PWY"],"synonyms":[{"name":"D-arabinose breakdown to xylulose 5-phosphate","type":"exact"},{"name":"D-arabinose degradation to xylulose 5-phosphate","type":"exact"}],"termid":"GO:0019573"}


id: MONDO:0021029
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An instance of sebaceous gland anomaly that is caused by a modification of the individual's genome.","definition_xrefs":["MONDO:patterns/genetic"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary epidermal appendage anomaly","termid":"MONDO:0021026"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"hereditary sebaceous gland anomaly","secondary_identifiers":["MEDGEN:1843175","GARD:20268","Orphanet:183460","UMLS:C5680577"],"synonyms":[{"name":"genetic sebaceous gland anomaly","type":"exact"}],"termid":"MONDO:0021029","xrefs":{"Monarch":{"xref_id":"0021029"}}}


id: FYPO:0007719
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which SMN complex assembly is abolished.","definition_xrefs":["PomBase:mah","PMID:33754639"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal SMN complex assembly","termid":"FYPO:0007718"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abolished SMN complex assembly","synonyms":[{"name":"SMN complex assembly abolished","type":"exact"},{"name":"abolished SMN complex assembly during mitotic cell cycle","type":"related"},{"name":"abolished SMN complex assembly during vegetative growth","type":"exact"}],"termid":"FYPO:0007719"}


id: MONDO:0024379
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A circadian sleep disorder characterized by at least three sleep episodes per 24-hour period, irregularly from day to day.","direct_ancestors":[{"relation_name":"is_a","term_name":"circadian rhythm sleep disorder","termid":"MONDO:0024361"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"circadian rhythm sleep disorder, irregular sleep wake type","secondary_identifiers":["SCTID:271793004","ICD9:327.33","ICD10CM:G47.23","UMLS:C0393771","MEDGEN:581571"],"synonyms":[{"name":"ISWD","type":"exact"},{"name":"irregular sleep-wake disorder","type":"exact"},{"name":"irregular sleep-wake pattern","type":"exact"}],"termid":"MONDO:0024379","xrefs":{"Monarch":{"xref_id":"0024379"}}}


id: PBO:0049571
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H2B histone pseudogene 8","termid":"PBO:0049571"}


id: FYPO:0008373
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cell surface is normal (i.e. indistinguishable from wild-type) during a cellular response to salt stress.","definition_xrefs":["PomBase:pb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to cell surface during vegetative growth","termid":"FYPO:0008372"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001312","FYPO:0000002","FYPO:0001320","FYPO:0000138"],"is_obsolete":false,"name":"normal protein localization to cell surface during cellular response to salt stress","termid":"FYPO:0008373"}


id: MONDO:0016632
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete thrombotic disorder due to a coagulation factors defect (obsolete MONDO:0016632)","secondary_identifiers":["Orphanet:248358"],"termid":"MONDO:0016632","xrefs":{"Monarch":{"xref_id":"0016632"}}}


id: FYPO:0004741
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the amount of filamentous actin (F-actin) in the actomyosin contractile ring is normal (i.e. indistinguishable from wild type) during mitotic anaphase B.","definition_xrefs":["PMID:25688133","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal actomyosin contractile ring","termid":"FYPO:0004740"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal F-actin level in actomyosin contractile ring during anaphase B","synonyms":[{"name":"normal F-actin level in actomyosin contractile ring during anaphase B during mitotic cell cycle","type":"related"},{"name":"normal F-actin level in actomyosin contractile ring during anaphase B during vegetative growth","type":"exact"},{"name":"normal F-actin level in contractile ring during anaphase B","type":"exact"},{"name":"normal F-actin level in cytokinetic contractile ring during anaphase B","type":"exact"},{"name":"normal abundance of actin in actomyosin contractile ring in anaphase B","type":"exact"},{"name":"normal actomyosin contractile ring F-actin level during anaphase B","type":"exact"},{"name":"normal filamentous actin level in actomyosin contractile ring during anaphase B","type":"exact"}],"termid":"FYPO:0004741"}


id: GO:0017088
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the hydrolysis of the terminal bond of Xaa-Pro-Xaa motifs to release unblocked, N-terminal dipeptides from substrates including Ala-Pro-para-nitroanilide and (sequentially, at the second, fourth and sixth bonds) of the motif Tyr-Pro-Phe-Pro-Gly-Pro-Ile.","definition_xrefs":["GOC:curator"],"gene_count":0,"genotype_count":0,"name":"obsolete X-Pro dipeptidyl-peptidase activity (obsolete GO:0017088)","synonyms":[{"name":"X-Pro dipeptidyl-peptidase activity","type":"exact"},{"name":"Xaa-Pro dipeptidyl-peptidase activity","type":"exact"}],"termid":"GO:0017088"}


id: GO:0018508
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: cis-1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate + NAD+ = catechol + CO2 + NADH + H+.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete cis-1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase activity (obsolete GO:0018508)","synonyms":[{"name":"benzoate cis-diol dehydrogenase activity","type":"exact"}],"termid":"GO:0018508"}


id: GO:0045661
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of myoblast differentiation. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers.","definition_xrefs":["GOC:go_curators","GOC:mtg_muscle","CL:0000056"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell differentiation","termid":"GO:0045595"},{"relation_name":"regulates","term_name":"myoblast differentiation","termid":"GO:0045445"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of myoblast differentiation","termid":"GO:0045661"}


id: GO:2000950
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of xyloglucan metabolic process.","definition_xrefs":["GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of macromolecule metabolic process","termid":"GO:0010604"},{"relation_name":"is_a","term_name":"positive regulation of carbohydrate metabolic process","termid":"GO:0045913"},{"relation_name":"is_a","term_name":"regulation of xyloglucan metabolic process","termid":"GO:2000948"},{"relation_name":"positively_regulates","term_name":"xyloglucan metabolic process","termid":"GO:0010411"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"positive regulation of xyloglucan metabolic process","synonyms":[{"name":"positive regulation of xyloglucan metabolism","type":"exact"}],"termid":"GO:2000950"}


id: PBO:0045307
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA methyltransferase 3 alpha","termid":"PBO:0045307"}


id: PBO:0071908
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPS3A pseudogene 47","termid":"PBO:0071908"}


id: PBO:0053745
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 972","termid":"PBO:0053745"}


id: GO:0045111
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Cytoskeletal structure made from intermediate filaments, typically organized in the cytosol as an extended system that stretches from the nuclear envelope to the plasma membrane. Some intermediate filaments run parallel to the cell surface, while others traverse the cytosol; together they form an internal framework that helps support the shape and resilience of the cell.","definition_xrefs":["ISBN:0716731363"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoskeleton","termid":"GO:0005856"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"intermediate filament cytoskeleton","termid":"GO:0045111"}


id: GO:0044441
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Any constituent part of a cilium, a specialized eukaryotic organelle that consists of a filiform extrusion of the cell surface. Each cilium is bounded by an extrusion of the cytoplasmic (plasma) membrane, and contains a regular longitudinal array of microtubules, anchored basally in a centriole.","definition_xrefs":["GOC:cilia","GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete ciliary part (obsolete GO:0044441)","synonyms":[{"name":"cilial part","type":"exact"},{"name":"cilium part","type":"exact"},{"name":"flagellar part","type":"narrow"},{"name":"flagellum component","type":"narrow"},{"name":"flagellum part","type":"narrow"},{"name":"microtubule-based flagellum part","type":"exact"}],"termid":"GO:0044441"}


id: PATO:0001093
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001093 relative flux value (obsolete PATO:0001093)","termid":"PATO:0001093"}


id: MONDO:0100299
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"PAX5 deficiency causing neurodevelopmental abnormalities including autism spectrum disorder in addition to hypogammaglobulinemia due to early B cell developmental block and impaired immune responses.","definition_xrefs":["PMID:35947077"],"direct_ancestors":[{"relation_name":"is_a","term_name":"B cell deficiency","termid":"MONDO:0002211"},{"relation_name":"is_a","term_name":"autism spectrum disorder","termid":"MONDO:0005258"},{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092","MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"PAX5-related B lymphopenia and autism spectrum disorder","synonyms":[{"name":"hypogammaglobulinemia and autism spectrum disorder","type":"exact"}],"termid":"MONDO:0100299","xrefs":{"Monarch":{"xref_id":"0100299"}}}


id: MOD:01695
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with an 3-(carboxamidomethylthio)propanoyl group.","definition_xrefs":["PubMed:15121203","Unimod:293#N-term"],"direct_ancestors":[{"relation_name":"is_a","term_name":"3-(carboxamidomethylthio)propanoylated residue","termid":"MOD:00612"},{"relation_name":"is_a","term_name":"alpha-amino acylated residue","termid":"MOD:01696"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-amino 3-(carboxamidomethylthio)propanoylated residue","synonyms":[{"name":"3-(carbamidomethylthio)propanoyl","type":"related"},{"name":"CAMthiopropanoyl","type":"related"}],"termid":"MOD:01695"}


id: GO:0042808
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binding to neuronal Cdc2-like kinase, an enzyme involved in the regulation of neuronal differentiation and neuro-cytoskeleton dynamics.","definition_xrefs":["GOC:jl","PMID:10721722"],"gene_count":0,"genotype_count":0,"name":"obsolete neuronal Cdc2-like kinase binding (obsolete GO:0042808)","synonyms":[{"name":"neuronal Cdc2-like kinase binding","type":"exact"}],"termid":"GO:0042808"}


id: PBO:0065618
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase 2 phosphatase activator","termid":"PBO:0065618"}


id: PBO:0061958
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily A member 14","termid":"PBO:0061958"}


id: GO:0014734
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The enlargement or overgrowth of all or part of an organ due to an increase in size (not length) of individual muscle fibers without cell division. In the case of skeletal muscle cells this happens due to the additional synthesis of sarcomeric proteins and assembly of myofibrils.","definition_xrefs":["GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"striated muscle hypertrophy","termid":"GO:0014897"},{"relation_name":"is_a","term_name":"skeletal muscle adaptation","termid":"GO:0043501"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"skeletal muscle hypertrophy","termid":"GO:0014734"}


id: MONDO:0009761
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign lymphatic neoplasm usually arising from the neck and characterized by cystic dilation of the lymphatic vessels.","definition_xrefs":["NCIT:C3724"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lymphangioma","termid":"MONDO:0002013"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"cystic hygroma","secondary_identifiers":["MedDRA:10058949","MEDGEN:60195","Orphanet:79486","DOID:3081","UMLS:C0206620","OMIM:257350","SCTID:399882002","ICDO:9173/0","MESH:D018191","EFO:1000888","GARD:6234"],"synonyms":[{"name":"cystic hygroma","type":"exact"},{"name":"cystic hygroma, fetal","type":"related"},{"name":"cystic hygroma, foetal","type":"related"},{"name":"cystic lymphangioma","type":"exact"},{"name":"hygroma","type":"exact"},{"name":"macrocystic lymphatic malformation","type":"related"},{"name":"nuchal bleb, familial","type":"related"}],"termid":"MONDO:0009761","xrefs":{"Monarch":{"xref_id":"0009761"}}}


id: PBO:0036284
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by Aspergillus niger clxA","termid":"PBO:0036284"}


id: PBO:0068519
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U1 small nuclear 114, pseudogene","termid":"PBO:0068519"}


id: PBO:0005592
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiosis specific protein kinase Mug27/Slk1","termid":"PBO:0005592"}


id: PBO:0073113
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"short chain dehydrogenase/reductase family 42E, member 1 pseudogene 1","termid":"PBO:0073113"}


id: SO:0001182
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A regulatory sequence found in the 5' and 3' UTRs of many mRNAs which encode iron-binding proteins. It has a hairpin structure and is recognized by trans-acting proteins known as iron-regulatory proteins.","definition_xrefs":["PMID:3198610","PMID:8710843"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UTR_region","termid":"SO:0000837"},{"relation_name":"part_of","term_name":"UTR","termid":"SO:0000203"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iron_responsive_element","secondary_identifiers":["http://en.wikipedia.org/wiki/Iron_responsive_element"],"synonyms":[{"name":"IRE","type":"exact"},{"name":"iron responsive element","type":"exact"}],"termid":"SO:0001182"}


id: PBO:0072585
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal RNA processing 7 homolog B, pseudogene","termid":"PBO:0072585"}


id: GO:1900118
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of execution phase of apoptosis.","definition_xrefs":["GOC:mtg_apoptosis","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of apoptotic process","termid":"GO:0043066"},{"relation_name":"is_a","term_name":"regulation of execution phase of apoptosis","termid":"GO:1900117"},{"relation_name":"negatively_regulates","term_name":"execution phase of apoptosis","termid":"GO:0097194"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of execution phase of apoptosis","synonyms":[{"name":"down regulation of execution phase of apoptosis","type":"exact"},{"name":"down-regulation of execution phase of apoptosis","type":"exact"},{"name":"downregulation of execution phase of apoptosis","type":"exact"},{"name":"inhibition of execution phase of apoptosis","type":"narrow"}],"termid":"GO:1900118"}


id: PBO:0077352
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 92","termid":"PBO:0077352"}


id: PBO:0046704
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ETS variant transcription factor 3 like","termid":"PBO:0046704"}


id: PR:Q9USJ1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 3-mercaptopyruvate sulfurtransferase SseA that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-mercaptopyruvate sulfurtransferase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC4B3.01","secondary_identifiers":["UniProtKB:Q9USJ1"],"synonyms":[{"name":"MST (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SPCC4B3.01","type":"related"},{"name":"Spom972h-sseA","type":"exact"}],"termid":"PR:Q9USJ1"}


id: GO:2000545
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of endothelial cell chemotaxis to fibroblast growth factor.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell chemotaxis to fibroblast growth factor","termid":"GO:1904848"},{"relation_name":"is_a","term_name":"regulation of endothelial cell chemotaxis to fibroblast growth factor","termid":"GO:2000544"},{"relation_name":"is_a","term_name":"negative regulation of endothelial cell chemotaxis","termid":"GO:2001027"},{"relation_name":"negatively_regulates","term_name":"endothelial cell chemotaxis to fibroblast growth factor","termid":"GO:0035768"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of endothelial cell chemotaxis to fibroblast growth factor","termid":"GO:2000545"}


id: PBO:0109145
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRUNE1 pseudogene 1","termid":"PBO:0109145"}


id: MONDO:0012158
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"keratoconus","termid":"MONDO:0015486"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"keratoconus 2","secondary_identifiers":["OMIM:608932","MEDGEN:332363","UMLS:C1837090","MESH:C563827"],"synonyms":[{"name":"KTCN2","type":"exact"},{"name":"keratoconus 2","type":"exact"}],"termid":"MONDO:0012158","xrefs":{"Monarch":{"xref_id":"0012158"}}}


id: GO:1901122
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving bacitracin A.","definition_xrefs":["UniPathway:UPA00179","GOC:TermGenie","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amide metabolic process","termid":"GO:0043603"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"bacitracin A metabolic process","synonyms":[{"name":"bacitracin A metabolism","type":"exact"}],"termid":"GO:1901122"}


id: PBO:0088688
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved fungal protein, implicated in vesicle trafficking or lipid metabolism","termid":"PBO:0088688"}


id: MONDO:0003433
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare parathyroid gland adenoma composed of neoplastic cells with abundant cytoplasm. The cytoplasm of the neoplastic cells is usually not entirely clear, and is often variably vacuolated, foamy, and granular.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenoma","termid":"MONDO:0004972"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"water-clear cell adenoma","secondary_identifiers":["DOID:5401","ICDO:8322/0","NCIT:C4155","MEDGEN:83129","UMLS:C0334321"],"synonyms":[{"name":"parathyroid gland water-clear cell adenoma","type":"exact"},{"name":"water-clear cell adenoma (morphologic abnormality)","type":"exact"}],"termid":"MONDO:0003433","xrefs":{"Monarch":{"xref_id":"0003433"}}}


id: PBO:0108977
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sperm associated microtubule inner protein 2","termid":"PBO:0108977"}


id: PBO:0030991
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_nucleosome_positioning_in_euchromatin","termid":"PBO:0030991"}


id: GO:0016511
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete endothelin-converting enzyme activity (obsolete GO:0016511)","synonyms":[{"name":"endothelin-converting enzyme activity","type":"exact"}],"termid":"GO:0016511"}


id: PBO:0047173
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 197 Y-linked member 6","termid":"PBO:0047173"}


id: GO:1990976
data:
  {"annotated_genes":["SJAG_01224","SJAG_02731","SJAG_05266","SJAG_01371","SJAG_00918","SJAG_01775","SJAG_01211","SJAG_05319","SJAG_01546","SJAG_03437","SJAG_05220"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90964,91571,92810,98647,100500,102412,109439,110833,111844,116074,118904],"is_not":false,"summary":null,"term":"GO:1990976"}]},"cv_name":"biological_process","definition":"The directed movement of a protein along a microtubule to the mitotic spindle pole body, mediated by motor proteins.","definition_xrefs":["PMID:25987607"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to mitotic spindle pole body","termid":"GO:1902440"},{"relation_name":"is_a","term_name":"protein transport along microtubule to spindle pole body","termid":"GO:1990852"}],"gene_count":11,"genes_by_uniquename":{"SJAG_00918":null,"SJAG_01211":null,"SJAG_01224":null,"SJAG_01371":null,"SJAG_01546":null,"SJAG_01775":null,"SJAG_02731":null,"SJAG_03437":null,"SJAG_05220":null,"SJAG_05266":null,"SJAG_05319":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"protein transport along microtubule to mitotic spindle pole body","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1990976","terms_by_termid":{"GO:1990976":null}}


id: PBO:0013119
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA-binding protein that suppresses Calcineurin deletion","termid":"PBO:0013119"}


id: MONDO:0000025
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete familial cold autoinflammatory syndrome (obsolete MONDO:0000025)","termid":"MONDO:0000025","xrefs":{"Monarch":{"xref_id":"0000025"}}}


id: PBO:0056222
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAGE family member D2","termid":"PBO:0056222"}


id: PBO:0070340
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY4 pseudogene 13","termid":"PBO:0070340"}


id: GO:0052494
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which an organism reduces the flow of fluid within its symbiont's vascular system, the vessels and tissue that carry or circulate fluids, such as blood, lymph or sap, through the body of an animal or plant. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete occlusion by host of symbiont vascular system (obsolete GO:0052494)","termid":"GO:0052494"}


id: PBO:0075904
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5","termid":"PBO:0075904"}


id: MONDO:0030911
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant non-syndromic intellectual disability","termid":"MONDO:0015802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0000426"],"is_obsolete":false,"name":"intellectual disability, autosomal dominant 46","secondary_identifiers":["DOID:0080237","OMIM:617601","UMLS:C4539851","MEDGEN:1618560"],"synonyms":[{"name":"MRD46","type":"related"},{"name":"autosomal dominant intellectual disability 46","type":"related"},{"name":"autosomal dominant mental retardation 46","type":"related"},{"name":"intellectual disability, autosomal dominant 46","type":"exact"},{"name":"mental retardation, autosomal dominant 46","type":"related"}],"termid":"MONDO:0030911","xrefs":{"Monarch":{"xref_id":"0030911"}}}


id: FYPO:0007213
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the dimethylation of lysine at position 9 of histone H3 in one or more heterochromatin islands occurs to a lower extent than normal.","definition_xrefs":["PMID:29214404","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased histone H3-K9 dimethylation during vegetative growth","termid":"FYPO:0000876"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0002494","FYPO:0002274","FYPO:0005447","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"decreased histone H3-K9 dimethylation at heterochromatin island during vegetative growth","synonyms":[{"name":"decreased histone H3 K9 dimethylation at heterochromatin island during vegetative growth","type":"exact"},{"name":"decreased histone H3-K9 dimethylation at heterochromatin island during mitotic cell cycle","type":"related"},{"name":"decreased histone H3K9 dimethylation at heterochromatin island during vegetative growth","type":"exact"},{"name":"decreased histone H3K9me2 at heterochromatin island during vegetative growth","type":"exact"},{"name":"decreased histone lysine H3 K9 dimethylation at heterochromatin island during vegetative growth","type":"exact"},{"name":"reduced histone H3-K9 dimethylation at heterochromatin island during vegetative growth","type":"exact"}],"termid":"FYPO:0007213"}


id: MONDO:0003090
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A carcinoma that arises from epithelial cells of the extrahepatic bile duct.","direct_ancestors":[{"relation_name":"is_a","term_name":"bile duct carcinoma","termid":"MONDO:0005496"},{"relation_name":"is_a","term_name":"malignant tumor of extrahepatic bile duct","termid":"MONDO:0021321"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0004335","MONDO:0002515"],"is_obsolete":false,"name":"extrahepatic bile duct carcinoma","secondary_identifiers":["UMLS:C0238019","DOID:4682","MEDGEN:116036","SCTID:372101000","NCIT:C3860"],"synonyms":[{"name":"carcinoma of extrahepatic bile duct","type":"exact"},{"name":"carcinoma of the extrahepatic bile duct","type":"exact"},{"name":"extrahepatic bile duct cancer","type":"exact"},{"name":"extrahepatic bile duct carcinoma","type":"exact"}],"termid":"MONDO:0003090","xrefs":{"Monarch":{"xref_id":"0003090"}}}


id: PBO:0036085
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_spatial_extent_of_double-strand_break_processing","termid":"PBO:0036085"}


id: PBO:0054939
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2353","termid":"PBO:0054939"}


id: PBO:0041227
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 1 open reading frame 43","termid":"PBO:0041227"}


id: PBO:0049587
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H3 clustered histone 5, pseudogene","termid":"PBO:0049587"}


id: GO:0031530
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a receptor for gonadotropin-releasing hormone (GnRH), a peptide hormone that is synthesized and released by the hypothalamus and is responsible for the release of follicle-stimulating hormone (FSH) and luteinizing hormone (LH) from the anterior pituitary.","definition_xrefs":["PMID:15196882","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide hormone receptor binding","termid":"GO:0051428"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"gonadotropin-releasing hormone receptor binding","synonyms":[{"name":"GnRH receptor binding","type":"exact"},{"name":"gonadotrophin-releasing hormone receptor binding","type":"exact"}],"termid":"GO:0031530"}


id: PBO:0065076
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prickle planar cell polarity protein 3","termid":"PBO:0065076"}


id: MONDO:0004793
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete uterine corpus cancer (obsolete MONDO:0004793)","termid":"MONDO:0004793","xrefs":{"Monarch":{"xref_id":"0004793"}}}


id: GO:1905176
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of vascular smooth muscle cell dedifferentiation.","definition_xrefs":["GOC:TermGenie","GOC:BHF_miRNA","GOC:rph","GO_REF:0000058","GOC:BHF","PMID:19088079"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular process","termid":"GO:0048522"},{"relation_name":"is_a","term_name":"positive regulation of developmental process","termid":"GO:0051094"},{"relation_name":"is_a","term_name":"regulation of vascular associated smooth muscle cell dedifferentiation","termid":"GO:1905174"},{"relation_name":"positively_regulates","term_name":"vascular associated smooth muscle cell dedifferentiation","termid":"GO:1990936"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of vascular associated smooth muscle cell dedifferentiation","synonyms":[{"name":"activation of vascular smooth muscle cell dedifferentiation","type":"narrow"},{"name":"positive regulation of vascular smooth muscle cell dedifferentiation","type":"exact"},{"name":"up regulation of vascular smooth muscle cell dedifferentiation","type":"exact"},{"name":"up-regulation of vascular smooth muscle cell dedifferentiation","type":"exact"},{"name":"upregulation of vascular smooth muscle cell dedifferentiation","type":"exact"}],"termid":"GO:1905176"}


id: MONDO:0007456
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diarrhea, glucose-stimulated secretory, with common variable immunodeficiency","secondary_identifiers":["MESH:C565099","MEDGEN:377585","OMIM:125890","UMLS:C1852087"],"synonyms":[{"name":"diarrhea, glucose-stimulated secretory, with common variable immunodeficiency","type":"exact"}],"termid":"MONDO:0007456","xrefs":{"Monarch":{"xref_id":"0007456"}}}


id: PBO:0081376
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 214","termid":"PBO:0081376"}


id: GO:0052730
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + sarcosine = S-adenosyl-L-homocysteine + N,N-dimethylglycine.","definition_xrefs":["RHEA:15453"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-methyltransferase activity","termid":"GO:0008170"},{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0016741","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"sarcosine N-methyltransferase activity","secondary_identifiers":["KEGG_REACTION:R07243","MetaCyc:RXN-9679"],"synonyms":[{"name":"S-adenosyl-L-methionine:N,N-sarcosine N-methyltransferase activity","type":"related"},{"name":"SDMT","type":"related"}],"termid":"GO:0052730"}


id: MONDO:0014679
data:
  {"annotated_genes":["SJAG_04537"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86915],"is_not":false,"summary":null,"term":"MONDO:0014679"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"PI4KA-related disorder","termid":"MONDO:1040012"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04537":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0002320","MONDO:0005559"],"is_obsolete":false,"name":"polymicrogyria, perisylvian, with cerebellar hypoplasia and arthrogryposis","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:899982","UMLS:C4225295","GARD:16130","OMIM:616531"],"synonyms":[{"name":"PMGYCHA","type":"related"},{"name":"polymicrogyria, perisylvian, with cerebellar hypoplasia and arthrogryposis","type":"exact"}],"termid":"MONDO:0014679","terms_by_termid":{"MONDO:0014679":null},"xrefs":{"Monarch":{"xref_id":"0014679"}}}


id: PBO:0002016
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin Nsp1","termid":"PBO:0002016"}


id: PBO:0024814
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-capable_of_regulating","termid":"PBO:0024814"}


id: PBO:0078559
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif containing 47","termid":"PBO:0078559"}


id: PR:Q9UTN9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An uncharacterized protein YbaZ that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02119"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alkyltransferase-like protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1250.04c","secondary_identifiers":["UniProtKB:Q9UTN9"],"synonyms":[{"name":"Spom972h-ybaZ","type":"exact"}],"termid":"PR:Q9UTN9"}


id: MONDO:0004025
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete spinal cord embryonal tumor, not otherwise specified (obsolete MONDO:0004025)","termid":"MONDO:0004025","xrefs":{"Monarch":{"xref_id":"0004025"}}}


id: MONDO:1010938
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Lymphosarcoma that occurs in rabbit.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lymphosarcoma, non-human animal","termid":"MONDO:1010209"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lymphosarcoma, rabbit","secondary_identifiers":["OMIA:000615-9986"],"termid":"MONDO:1010938","xrefs":{"Monarch":{"xref_id":"1010938"}}}


id: PBO:0004112
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytosolic thiouridylase subunit Ctu1","termid":"PBO:0004112"}


id: MONDO:0002841
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete eosinophilic gastroenteritis (obsolete MONDO:0002841)","termid":"MONDO:0002841","xrefs":{"Monarch":{"xref_id":"0002841"}}}


id: PomGeneEx:0000006
data:
  {"annotation_feature_type":"gene","cv_name":"PomGeneEx","definition":"A gene expression qualifier that indicates that an RNA or protein is not detectable under a given set of conditions or at an indicated time.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gene expression qualifier","termid":"PomGeneEx:0000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"absent","synonyms":[{"name":"gene expression absent","type":"exact"},{"name":"gene product absent","type":"exact"}],"termid":"PomGeneEx:0000006"}


id: PBO:0003550
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"no initiator methionine","termid":"PBO:0003550"}


id: PBO:0036482
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arginine specific carbamoyl-phosphate synthase Arg4","termid":"PBO:0036482"}


id: PBO:0002541
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G-protein coupled receptor Stm1","termid":"PBO:0002541"}


id: GO:1900756
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Protein processing that takes place in the phagosome. Most protein processing in the phagosome represents protein degradation.","definition_xrefs":["GOC:rjd","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein processing","termid":"GO:0016485"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051604"}],"interesting_parent_ids":["GO:0051604","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"protein processing in phagocytic vesicle","synonyms":[{"name":"peptidolysis during protein maturation in phagocytic vesicle","type":"related"},{"name":"peptidolysis during protein maturation in phagosome","type":"related"},{"name":"protein maturation by peptide bond cleavage in phagocytic vesicle","type":"exact"},{"name":"protein maturation by peptide bond cleavage in phagosome","type":"exact"},{"name":"protein maturation by peptide bond hydrolysis in phagocytic vesicle","type":"exact"},{"name":"protein maturation by peptide bond hydrolysis in phagosome","type":"exact"},{"name":"protein maturation by proteolysis in phagocytic vesicle","type":"related"},{"name":"protein maturation by proteolysis in phagosome","type":"related"},{"name":"protein processing in phagosome","type":"exact"}],"termid":"GO:1900756"}


id: GO:0006164
data:
  {"annotated_genes":["SJAG_02364","SJAG_03114","SJAG_00964","SJAG_00542","SJAG_04970","SJAG_01070","SJAG_04634","SJAG_04849","SJAG_02850","SJAG_02564","SJAG_02598","SJAG_00133","SJAG_02618","SJAG_01298","SJAG_03811","SJAG_01661","SJAG_01566","SJAG_06634","SJAG_MIT09","SJAG_04422","SJAG_MIT37","SJAG_00044","SJAG_01814","SJAG_01500","SJAG_00438","SJAG_02887","SJAG_05204","SJAG_00915","SJAG_03355","SJAG_04681","SJAG_04693","SJAG_01081","SJAG_04882","SJAG_04123","SJAG_02889","SJAG_01582","SJAG_03946","SJAG_00836","SJAG_01859","SJAG_03298","SJAG_MIT15","SJAG_04122","SJAG_07003","SJAG_03925","SJAG_02038","SJAG_02105","SJAG_00985","SJAG_03140"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[74178,75627,99587],"is_not":false,"summary":null,"term":"GO:0006164"},{"annotations":[78755,80749],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044208"},{"annotations":[57101,66761,78530,73342,71658,58242,65385,60474],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006189"},{"annotations":[73651],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006172"},{"annotations":[75696,57253],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0044209"},{"annotations":[63848,59761],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006177"},{"annotations":[103087,77407],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032263"},{"annotations":[104134,65591,76666],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006183"},{"annotations":[65904,77408],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032264"},{"annotations":[79425,115057,76515],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009435"},{"annotations":[81869,72547],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034355"},{"annotations":[72857,79735,81651],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006741"},{"annotations":[120000],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:1905707"},{"annotations":[94695,104937,105555,90951,121073,121085,95122,121079,106930,105581,110734,103714,117828,109836,96703,109744,95713],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0042776"},{"annotations":[77409,110213],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032265"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.","definition_xrefs":["ISBN:0198506732","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleotide metabolic process","termid":"GO:0006163"},{"relation_name":"is_a","term_name":"nucleotide biosynthetic process","termid":"GO:0009165"},{"relation_name":"is_a","term_name":"purine-containing compound biosynthetic 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nucleotide biosynthetic process","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000104":null,"GO_REF:0000107":null,"GO_REF:0000108":null},"secondary_identifiers":["MetaCyc:DENOVOPURINE2-PWY"],"synonyms":[{"name":"purine nucleotide anabolism","type":"exact"},{"name":"purine nucleotide biosynthesis","type":"exact"},{"name":"purine nucleotide formation","type":"exact"},{"name":"purine nucleotide synthesis","type":"exact"}],"termid":"GO:0006164","terms_by_termid":{"GO:0006164":null,"GO:0006172":null,"GO:0006177":null,"GO:0006183":null,"GO:0006189":null,"GO:0006741":null,"GO:0009435":null,"GO:0032263":null,"GO:0032264":null,"GO:0032265":null,"GO:0034355":null,"GO:0042776":null,"GO:0044208":null,"GO:0044209":null,"GO:1905707":null}}


id: PBO:0088158
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Voltage-gated chloride channel; localized to the golgi, the endosomal system, and plasma membrane; involved in cation homeostasis; highly homologous to vertebrate voltage-gated chloride channels; modulates TBSV model (+) RNA virus replication by regulating copper metabolism","termid":"PBO:0088158"}


id: PBO:0089352
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi 4,6-pyruvylated galactose (PvGal) residue biosynthesis protein Pvg5","termid":"PBO:0089352"}


id: PBO:0087964
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transporter of the ATP-binding cassette (ABC) family; involved in bile acid transport; negative regulator of vacuole fusion; regulates release of lumenal Ca2+ stores; similar to mammalian bile transporters; YBT1 has a paralog, VMR1, that arose from the whole genome duplication","termid":"PBO:0087964"}


id: PBO:0050212
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group nucleosome binding domain 1 pseudogene 29","termid":"PBO:0050212"}


id: PBO:0042444
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDC42EP3 antisense RNA 1","termid":"PBO:0042444"}


id: GO:0047843
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-dehydro-D-gluconate + A = 2,5-didehydro-D-gluconate + AH(2).","definition_xrefs":["RHEA:12368"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on CH-OH group of donors","termid":"GO:0016614"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"dehydrogluconate dehydrogenase activity","secondary_identifiers":["KEGG_REACTION:R07153","EC:1.1.99.4","MetaCyc:DEHYDROGLUCONATE-DEHYDROGENASE-RXN"],"synonyms":[{"name":"2-dehydro-D-gluconate:acceptor 2-oxidoreductase activity","type":"related"},{"name":"2-keto-D-gluconate dehydrogenase activity","type":"related"},{"name":"2-oxogluconate dehydrogenase activity","type":"related"},{"name":"alpha-ketogluconate dehydrogenase activity","type":"related"},{"name":"ketogluconate dehydrogenase activity","type":"related"}],"termid":"GO:0047843"}


id: PBO:0078384
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"three prime repair exonuclease 1","termid":"PBO:0078384"}


id: GO:1902066
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cell wall pectin metabolic process.","definition_xrefs":["GOC:TermGenie","PMID:23453954"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of polysaccharide metabolic process","termid":"GO:0032881"},{"relation_name":"regulates","term_name":"cell wall pectin metabolic process","termid":"GO:0052546"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"regulation of cell wall pectin metabolic process","synonyms":[{"name":"regulation of cell wall pectin metabolism","type":"exact"},{"name":"regulation of cellulose and pectin-containing cell wall pectin metabolic process","type":"exact"},{"name":"regulation of pectin metabolism during cell wall biogenesis","type":"exact"},{"name":"regulation of plant-type cell wall pectin metabolic process","type":"exact"}],"termid":"GO:1902066"}


id: PBO:0001799
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dihydrodiol dehydrogenase (predicted)","termid":"PBO:0001799"}


id: PBO:0060324
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myosin IC","termid":"PBO:0060324"}


id: PBO:0000090
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"intergenic RNA (predicted)","termid":"PBO:0000090"}


id: GO:0032663
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of interleukin-2 production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytokine production","termid":"GO:0001817"},{"relation_name":"regulates","term_name":"interleukin-2 production","termid":"GO:0032623"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"regulation of interleukin-2 production","secondary_identifiers":["GO:1900040","GO:0045076"],"synonyms":[{"name":"regulation of IL-2 production","type":"exact"},{"name":"regulation of interleukin-2 biosynthetic process","type":"narrow"},{"name":"regulation of interleukin-2 secretion","type":"narrow"}],"termid":"GO:0032663"}


id: PBO:0081008
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZBTB44 divergent transcript","termid":"PBO:0081008"}


id: MONDO:0005808
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Inflammation of the conjunctiva in a newborn due to Chlamydia trachomatis which was acquired during labor and delivery.","definition_xrefs":["NCIT:C116817"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chlamydia trachomatis infectious disease","termid":"MONDO:0005701"},{"relation_name":"is_a","term_name":"bacterial conjunctivitis","termid":"MONDO:0006668"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"inclusion conjunctivitis","secondary_identifiers":["MEDGEN:1095","SCTID:231861005","ICD9:077.0","EFO:0007324","MESH:D003235","ICD10CM:A74.0","DOID:13800","ICD9:077.98","UMLS:C0009770"],"synonyms":[{"name":"Chlamydial conjunctivitis","type":"exact"},{"name":"Paratrachoma","type":"related"},{"name":"Trachoma","type":"exact"},{"name":"adult inclusion conjunctivitis","type":"exact"},{"name":"inclusion blennorrhoea","type":"exact"},{"name":"inclusion blenorrhea","type":"exact"},{"name":"neonatal Chlamydia conjunctivitis","type":"exact"}],"termid":"MONDO:0005808","xrefs":{"Monarch":{"xref_id":"0005808"}}}


id: MONDO:0018531
data:
  {"annotated_genes":["SJAG_02049"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88454],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007256"}]},"cv_name":"mondo","definition":"A carcinoma that arises from the hepatocytes or intrahepatic bile ducts. The main subtypes are hepatocellular carcinoma (hepatoma) and cholangiocarcinoma.","definition_xrefs":["NCIT:C7927"],"direct_ancestors":[{"relation_name":"is_a","term_name":"liver cancer","termid":"MONDO:0002691"},{"relation_name":"is_a","term_name":"digestive system carcinoma","termid":"MONDO:0006181"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02049":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0002515"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0004335","MONDO:0002515"],"is_obsolete":false,"name":"carcinoma of liver and intrahepatic biliary tract","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["Orphanet:424936","UMLS:C0279000","ONCOTREE:HCCIHCH","GARD:21786","MEDGEN:78921","ICD10CM:C22.1"],"synonyms":[{"name":"cancer of liver","type":"broad"},{"name":"cancer of liver and intrahepatic biliary tract","type":"broad"},{"name":"cancer of the liver","type":"broad"},{"name":"cancer of the liver and intrahepatic biliary tract","type":"broad"},{"name":"carcinoma of liver","type":"broad"},{"name":"carcinoma of liver and IBT","type":"exact"},{"name":"hepatic cancer","type":"broad"},{"name":"hepatocellular carcinoma plus intrahepatic cholangiocarcinoma","type":"related"},{"name":"liver and intrahepatic bile duct cancer","type":"broad"},{"name":"liver and intrahepatic bile duct carcinoma","type":"exact"},{"name":"liver and intrahepatic biliary tract cancer","type":"exact"},{"name":"liver and intrahepatic biliary tract carcinoma","type":"exact"},{"name":"liver cancer","type":"broad"},{"name":"liver carcinoma","type":"broad"},{"name":"liver/hepatobiliary cancer","type":"broad"},{"name":"primary liver carcinoma","type":"exact"}],"termid":"MONDO:0018531","terms_by_termid":{"MONDO:0007256":null},"xrefs":{"Monarch":{"xref_id":"0018531"}}}


id: MONDO:0020101
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A group of inherited hemolytic anemias caused by erythrocyte membrane defects. This includes hereditary pyropoikilocytosis, hereditary spherocytosis and hereditary elliptocytosis.","definition_xrefs":["NCIT:C101218"],"gene_count":0,"genotype_count":0,"name":"obsolete constitutional hemolytic anemia due to membrane defect (obsolete MONDO:0020101)","secondary_identifiers":["Orphanet:98364","SCTID:111575000"],"synonyms":[{"name":"anemia due to membrane defect","type":"exact"},{"name":"hemolytic anemia due to erythrocyte membrane defect","type":"exact"},{"name":"hemolytic anemia due to membrane defect","type":"exact"},{"name":"rare constitutional hemolytic anemia due to a red cell membrane anomaly","type":"exact"}],"termid":"MONDO:0020101","xrefs":{"Monarch":{"xref_id":"0020101"}}}


id: GO:0032821
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of natural killer cell proliferation as part of an immune response.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of immune effector process","termid":"GO:0002698"},{"relation_name":"is_a","term_name":"negative regulation of natural killer cell proliferation","termid":"GO:0032818"},{"relation_name":"is_a","term_name":"regulation of natural killer cell proliferation involved in immune response","termid":"GO:0032820"},{"relation_name":"is_a","term_name":"negative regulation of immune response","termid":"GO:0050777"},{"relation_name":"negatively_regulates","term_name":"natural killer cell proliferation involved in immune response","termid":"GO:0002324"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of natural killer cell proliferation involved in immune response","synonyms":[{"name":"down regulation of natural killer cell proliferation during immune response","type":"related"},{"name":"down-regulation of natural killer cell proliferation during immune response","type":"related"},{"name":"downregulation of natural killer cell proliferation during immune response","type":"related"},{"name":"inhibition of natural killer cell proliferation during immune response","type":"narrow"},{"name":"negative regulation of NK cell proliferation during immune response","type":"related"},{"name":"negative regulation of natural killer cell proliferation during immune response","type":"related"}],"termid":"GO:0032821"}


id: MONDO:0018125
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Focal epilepsy-intellectual disability-cerebro-cerebellar malformation is a rare, genetic neurological disorder characterized by early infantile-onset of seizures, borderline to moderate intellectual disability, cerebellar features including dysarthria and ataxia and cerebellar atrophy and cortical thickening observed on MRI imaging. Seizures are typically focal (with prominent eye blinking, facial and limb jerking), precipitated by fever and often commence with an oral sensory aura (anesthetized tongue sensation). When not properly controlled by anti-epileptic medication, weekly frequency and persistence into adult life is observed.","definition_xrefs":["Orphanet:352587"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monogenic epilepsy","termid":"MONDO:0015653"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"focal epilepsy-intellectual disability-cerebro-cerebellar malformation","secondary_identifiers":["MEDGEN:1640999","UMLS:C4707306","GARD:21522"],"synonyms":[{"name":"focal epilepsy-intellectual disability-dysarthria-ataxia syndrome","type":"exact"}],"termid":"MONDO:0018125","xrefs":{"Monarch":{"xref_id":"0018125"}}}


id: PBO:0060478
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NANOGNB pseudogene 3","termid":"PBO:0060478"}


id: GO:0001314
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Replication of circular DNA following excision from the chromosome of dividing cells as they age; replication of extrachromosomal circular DNA generally occurs independently of chromosomal replication.","definition_xrefs":["GOC:jh"],"gene_count":0,"genotype_count":0,"name":"obsolete replication of extrachromosomal circular DNA involved in replicative cell aging (obsolete GO:0001314)","synonyms":[{"name":"replication of extrachromosomal circular DNA during replicative cell ageing","type":"exact"},{"name":"replication of extrachromosomal circular DNA during replicative cell aging","type":"related"}],"termid":"GO:0001314"}


id: PBO:0040224
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"activating transcription factor 1","termid":"PBO:0040224"}


id: PR:P22189
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cta3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P22189"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium-transporting ATPase 3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC839.06","synonyms":[{"name":"Spom972h-cta3","type":"exact"}],"termid":"PR:P22189"}


id: PBO:0074327
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMARCA2 antisense RNA 1","termid":"PBO:0074327"}


id: MONDO:0021079
data:
  {"annotated_genes":["SJAG_03689"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88164],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011014"}]},"cv_name":"mondo","definition":"A benign or malignant neoplasm arising during childhood.","definition_xrefs":["NCIT:C6283"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neoplasm","termid":"MONDO:0005070"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03689":null},"genotype_count":0,"is_obsolete":false,"name":"childhood neoplasm","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:237153","UMLS:C1368871"],"synonyms":[{"name":"childhood neoplasm","type":"exact"},{"name":"childhood neoplasm (disease)","type":"exact"},{"name":"childhood tumor","type":"exact"},{"name":"childhood tumour","type":"exact"},{"name":"neoplasm (disease) of childhood","type":"exact"},{"name":"paediatric neoplasm","type":"exact"},{"name":"paediatric neoplasm (disease)","type":"exact"},{"name":"paediatric tumour","type":"exact"},{"name":"pediatric neoplasm","type":"exact"},{"name":"pediatric neoplasm (disease)","type":"exact"},{"name":"pediatric tumor","type":"exact"}],"termid":"MONDO:0021079","terms_by_termid":{"MONDO:0011014":null},"xrefs":{"Monarch":{"xref_id":"0021079"}}}


id: GO:0003220
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of left cardiac ventricle muscle are generated and organized.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ventricular cardiac muscle tissue morphogenesis","termid":"GO:0055010"},{"relation_name":"part_of","term_name":"cardiac left ventricle morphogenesis","termid":"GO:0003214"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"left ventricular cardiac muscle tissue morphogenesis","synonyms":[{"name":"left ventricular myocardium morphogenesis","type":"exact"}],"termid":"GO:0003220"}


id: PBO:0117164
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CELF2 antisense RNA 3","termid":"PBO:0117164"}


id: PBO:0027989
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_after_spore_germination,_without_cell_division,_abnormal_septum_morphology","termid":"PBO:0027989"}


id: PBO:0003169
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin ligase complex subunit, involved in proteasome-dependent catabolite inactivation of FBPase (predicted)","termid":"PBO:0003169"}


id: GO:1901274
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of 2-dehydro-3-deoxy-D-gluconic acid.","definition_xrefs":["GOC:TermGenie","UniPathway:UPA00856","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monosaccharide biosynthetic process","termid":"GO:0046364"},{"relation_name":"is_a","term_name":"monocarboxylic acid biosynthetic process","termid":"GO:0072330"},{"relation_name":"is_a","term_name":"2-dehydro-3-deoxy-D-gluconic acid metabolic process","termid":"GO:1901272"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"2-dehydro-3-deoxy-D-gluconic acid biosynthetic process","synonyms":[{"name":"2-dehydro-3-deoxy-D-gluconic acid anabolism","type":"exact"},{"name":"2-dehydro-3-deoxy-D-gluconic acid biosynthesis","type":"exact"},{"name":"2-dehydro-3-deoxy-D-gluconic acid formation","type":"exact"},{"name":"2-dehydro-3-deoxy-D-gluconic acid synthesis","type":"exact"}],"termid":"GO:1901274"}


id: PBO:0066628
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"replication timing regulatory factor 1","termid":"PBO:0066628"}


id: GO:0047902
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N-formyl-L-aspartate + H2O = formate + L-aspartate.","definition_xrefs":["MetaCyc:FORMYLASPARTATE-DEFORMYLASE-RXN","EC:3.5.1.8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0016810","GO:0003674"],"is_obsolete":false,"name":"formylaspartate deformylase activity","secondary_identifiers":["RHEA:22040"],"synonyms":[{"name":"N-formyl-L-aspartate amidohydrolase activity","type":"related"},{"name":"formylaspartic formylase (formylase I, formylase II)","type":"related"}],"termid":"GO:0047902"}


id: GO:0140144
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The non-collagenous compartment of the solid phase in basement membrane ECM, including glycoproteins like laminins or nidogens.","definition_xrefs":["PMID:28324731","PMID:21421915"],"direct_ancestors":[{"relation_name":"is_a","term_name":"external encapsulating structure","termid":"GO:0030312"},{"relation_name":"part_of","term_name":"solid phase of basement membrane","termid":"GO:0140139"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"non-collagenous component of basement membrane","termid":"GO:0140144"}


id: GO:0015469
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A toxin that exerts its effects by forming a channel in a membrane that allows the unregulated passage of substances into and out of the cell.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete channel-forming toxin activity (obsolete GO:0015469)","synonyms":[{"name":"channel-forming toxin activity","type":"exact"}],"termid":"GO:0015469"}


id: PBO:0050364
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 67","termid":"PBO:0050364"}


id: SO:0000255
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A primary transcript encoding a small ribosomal subunit RNA.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA_primary_transcript","termid":"SO:0000209"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rRNA_small_subunit_primary_transcript","synonyms":[{"name":"rRNA small subunit primary transcript","type":"exact"}],"termid":"SO:0000255"}


id: GO:0060533
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the bronchus cartilage is generated and organized. The bronchus cartilage is the connective tissue of the portion of the airway that connects to the lungs.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cartilage morphogenesis","termid":"GO:0060536"},{"relation_name":"part_of","term_name":"bronchus morphogenesis","termid":"GO:0060434"},{"relation_name":"part_of","term_name":"bronchus cartilage development","termid":"GO:0060532"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"bronchus cartilage morphogenesis","termid":"GO:0060533"}


id: GO:0033816
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-2,4-diaminobutyrate + acetyl-CoA = N(4)-acetyl-L-2,4-diaminobutyrate + CoA + H+.","definition_xrefs":["EC:2.3.1.178","RHEA:16901"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetyltransferase activity","termid":"GO:0016407"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016746"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016746","GO:0016740"],"is_obsolete":false,"name":"diaminobutyrate acetyltransferase activity","secondary_identifiers":["KEGG_REACTION:R06978","MetaCyc:R102-RXN"],"synonyms":[{"name":"2,4-diaminobutanoate acetyltransferase activity","type":"related"},{"name":"DAB acetyltransferase activity","type":"related"},{"name":"DABA acetyltransferase activity","type":"related"},{"name":"DABAcT","type":"related"},{"name":"EctA","type":"related"},{"name":"L-2,4-diaminobutanoate acetyltransferase activity","type":"related"},{"name":"L-2,4-diaminobutyrate acetyltransferase activity","type":"related"},{"name":"acetyl-CoA:L-2,4-diaminobutanoate 4-N-acetyltransferase activity","type":"related"},{"name":"acetyl-CoA:L-2,4-diaminobutanoate N4-acetyltransferase activity","type":"related"},{"name":"diaminobutyric acid acetyltransferase activity","type":"related"}],"termid":"GO:0033816"}


id: GO:0016339
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The attachment of one cell to another cell via adhesion molecules that require the presence of calcium for the interaction.","definition_xrefs":["GOC:hb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell adhesion via plasma-membrane adhesion molecules","termid":"GO:0098742"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules","synonyms":[{"name":"calcium-dependent cell adhesion molecule activity","type":"related"}],"termid":"GO:0016339"}


id: PBO:0004994
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endoplasmic reticulum membrane protein involved in assembly of the V-ATPase (predicted)","termid":"PBO:0004994"}


id: PBO:0051325
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin kappa variable 2-10 (pseudogene)","termid":"PBO:0051325"}


id: PR:O94697
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A replication factor C subunit 3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02909","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"replication factor C subunit 5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC83.14c","secondary_identifiers":["UniProtKB:O94697"],"synonyms":[{"name":"Spom972h-RFC3","type":"exact"},{"name":"replication factor C5 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94697"}


id: MONDO:0017885
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Chromophobe renal cell carcinoma is a rare subtype of renal cell carcinoma, originating from the intercalating cells of the collecting ducts and macroscopically manifesting as a well-circumscribed, highly lobulated, solid tumor that is usually diagnosed at an early stage. It is frequently asymptomatic, or may present with nonspecific symptoms, such as weight loss, fever or fatigue. The classic presentation observed in renal tumors (hematuria, flank pain and palpable mass) is occasionally observed and usually indicates an advanced stage of the disease. It is most frequently sporadic however, several familial cases, associated with Birt-Hogg DubC) syndrome, have been described.","definition_xrefs":["Orphanet:319303"],"direct_ancestors":[{"relation_name":"is_a","term_name":"renal cell adenocarcinoma","termid":"MONDO:0005549"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0005240"],"is_obsolete":false,"name":"chromophobe renal cell carcinoma","secondary_identifiers":["ICDO:8317/3","ONCOTREE:CHRCC","MEDGEN:266091","EFO:0000335","DOID:4471","SCTID:733471003","NCIT:C4146","UMLS:C1266042","ICDO:8270/3","GARD:6064"],"synonyms":[{"name":"CHRCC","type":"related"},{"name":"CRCC","type":"related"},{"name":"ChRCC","type":"related"},{"name":"chromophobe adenocarcinoma","type":"exact"},{"name":"chromophobe carcinoma","type":"exact"},{"name":"chromophobe carcinoma of kidney","type":"exact"},{"name":"chromophobe carcinoma of the kidney","type":"exact"},{"name":"chromophobe cell carcinoma of kidney","type":"exact"},{"name":"chromophobe cell carcinoma of the kidney","type":"exact"},{"name":"chromophobe renal cell adenocarcinoma","type":"exact"},{"name":"chromophobe renal cell cancer","type":"exact"},{"name":"chromophobe renal cell carcinoma","type":"exact"},{"name":"kidney chromophobe","type":"exact"},{"name":"renal cell carcinoma, chromophobe cell","type":"exact"},{"name":"renal cell carcinoma, chromophobe type","type":"exact"}],"termid":"MONDO:0017885","xrefs":{"Monarch":{"xref_id":"0017885"}}}


id: GO:0016258
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The generation, in the Golgi apparatus, of side chain diversity from high mannose Man5GlcNAc2-Asn N-glycans by specific glycosyltransferases and glycosidases.","definition_xrefs":["ISBN:0879695595"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-glycan processing","termid":"GO:0006491"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"N-glycan diversification","termid":"GO:0016258"}


id: PBO:0004614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-protein ligase E3 implicated in trancription (predicted)","termid":"PBO:0004614"}


id: PBO:0065993
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retinoic acid induced 2","termid":"PBO:0065993"}


id: GO:0015425
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + nonpolar amino acid(out) = ADP + phosphate + nonpolar amino acid(in).","definition_xrefs":["EC:7.4.2.2"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ABC-type amino acid transporter activity","termid":"GO:0015424"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"ATPase-coupled nonpolar-amino acid transporter activity","secondary_identifiers":["TC:3.A.1.4.1","MetaCyc:3.6.3.22-RXN"],"synonyms":[{"name":"ATP-dependent nonpolar-amino acid transporter activity","type":"exact"},{"name":"leucine/isoleucine/valine porter activity","type":"related"},{"name":"nonpolar amino acid-transporting ATPase activity","type":"exact"},{"name":"nonpolar-amino acid ABC transporter","type":"exact"},{"name":"nonpolar-amino acid-transporting ATPase activity","type":"exact"},{"name":"nonpolar-amino-acid-transporting ATPase activity","type":"exact"}],"termid":"GO:0015425"}


id: MONDO:0024635
data:
  {"annotated_genes":["SJAG_03920","SJAG_00260"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88620,88621],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011719"}]},"cv_name":"mondo","definition":"A disease that involves the small intestine.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intestinal disorder","termid":"MONDO:0005020"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00260":null,"SJAG_03920":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"small intestine disorder","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:574283","SCTID:119522002","UMLS:C0341268"],"synonyms":[{"name":"disease of small intestine","type":"exact"},{"name":"disease or disorder of small intestine","type":"exact"},{"name":"disorder of small intestine","type":"exact"},{"name":"small intestine disease or disorder","type":"exact"}],"termid":"MONDO:0024635","terms_by_termid":{"MONDO:0011719":null},"xrefs":{"Monarch":{"xref_id":"0024635"}}}


id: FYPO:0000819
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which the concentration of P-factor, the mating pheromone produced by mating type plus cells, released into the growth medium is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased concentration of pheromone in growth medium","termid":"FYPO:0000817"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001155"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001155"],"is_obsolete":false,"name":"increased concentration of P-factor in growth medium","synonyms":[{"name":"increased accumulation of P-factor in growth medium","type":"related"},{"name":"increased level of P-factor in growth medium","type":"exact"},{"name":"increased release of P-factor into growth medium","type":"related"}],"termid":"FYPO:0000819"}


id: PBO:0013809
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-keto sterol reductase Erg27 (predicted)","termid":"PBO:0013809"}


id: GO:0070892
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with lipoteichoic acid and transmitting the signal to initiate an innate immune response.","definition_xrefs":["PMID:14665680","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pattern recognition receptor activity","termid":"GO:0038187"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"lipoteichoic acid immune receptor activity","synonyms":[{"name":"lipoteichoic acid receptor activity","type":"broad"}],"termid":"GO:0070892"}


id: PBO:0060178
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metaxin 2","termid":"PBO:0060178"}


id: GO:0043527
data:
  {"annotated_genes":["SJAG_04181","SJAG_04680","SJAG_04848","SJAG_02637","SJAG_02386","SJAG_04890"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[76698,75905],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031515"},{"annotations":[77164,106040],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043528"},{"annotations":[59368,117697],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106143"}]},"cv_name":"cellular_component","definition":"A multimeric protein complex involved in the methylation of specific nucleotides in tRNA.","definition_xrefs":["PMID:24904644","PMID:9851972","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase complex","termid":"GO:0034708"}],"gene_count":6,"genes_by_uniquename":{"SJAG_02386":null,"SJAG_02637":null,"SJAG_04181":null,"SJAG_04680":null,"SJAG_04848":null,"SJAG_04890":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"tRNA methyltransferase complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"termid":"GO:0043527","terms_by_termid":{"GO:0031515":null,"GO:0043528":null,"GO:0106143":null}}


id: MONDO:0100259
data:
  {"annotated_genes":["SJAG_02619"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88656],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008953"},{"annotations":[89000],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011101"}]},"cv_name":"mondo","definition":"Any Zellweger spectrum disorder in which the cause of the disease is a mutation in the PEX1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Zellweger spectrum disorders","termid":"MONDO:0019609"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02619":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005244"},{"rel_name":"is_a","termid":"MONDO:0019053"},{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0019053","MONDO:0005559","MONDO:0005244","MONDO:0006025"],"is_obsolete":false,"name":"peroxisome biogenesis disorder due to PEX1 defect","references_by_uniquename":{"PB_REF:0000006":null},"synonyms":[{"name":"PEX1 related Zellweger spectrum disorder","type":"exact"},{"name":"peroxisome biogenesis disorder due to PEX1 defect","type":"exact"}],"termid":"MONDO:0100259","terms_by_termid":{"MONDO:0008953":null,"MONDO:0011101":null},"xrefs":{"Monarch":{"xref_id":"0100259"}}}


id: PBO:0043304
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-type lectin like 1, pseudogene","termid":"PBO:0043304"}


id: GO:1990779
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A transmembrane signaling receptor complex found exclusively on platelets. Involved in haemostasis and thrombosis where it aids blood coagulation.","definition_xrefs":["PMID:1730602","PMID:25297919","PMID:23336709","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycoprotein complex","termid":"GO:0090665"},{"relation_name":"is_a","term_name":"plasma membrane signaling receptor complex","termid":"GO:0098802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005886","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"glycoprotein Ib-IX-V complex","synonyms":[{"name":"CD42","type":"exact"},{"name":"GPIb-IX-V complex","type":"exact"},{"name":"GPIb-V-IX complex","type":"exact"}],"termid":"GO:1990779"}


id: GO:1900602
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of endocrocin.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ketone biosynthetic process","termid":"GO:0042181"},{"relation_name":"is_a","term_name":"secondary metabolite biosynthetic process","termid":"GO:0044550"},{"relation_name":"is_a","term_name":"phenol-containing compound biosynthetic process","termid":"GO:0046189"},{"relation_name":"is_a","term_name":"carboxylic acid biosynthetic process","termid":"GO:0046394"},{"relation_name":"is_a","term_name":"endocrocin metabolic process","termid":"GO:1900600"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0019748","GO:0044281"],"is_obsolete":false,"name":"endocrocin biosynthetic process","synonyms":[{"name":"endocrocin anabolism","type":"exact"},{"name":"endocrocin biosynthesis","type":"exact"},{"name":"endocrocin formation","type":"exact"},{"name":"endocrocin synthesis","type":"exact"}],"termid":"GO:1900602"}


id: PBO:0064401
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pancreatic lipase","termid":"PBO:0064401"}


id: MONDO:0003411
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A hemangiopericytoma arising from the breast.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"breast sarcoma","termid":"MONDO:0002490"},{"relation_name":"is_a","term_name":"hemangiopericytoma","termid":"MONDO:0005094"},{"relation_name":"is_a","term_name":"breast neoplasm","termid":"MONDO:0021100"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"breast hemangiopericytoma","secondary_identifiers":["DOID:5370","NCIT:C40396","UMLS:C1511313","MEDGEN:267766"],"synonyms":[{"name":"breast hemangiopericytoma","type":"exact"},{"name":"breast spindle cell tumor","type":"exact"},{"name":"breast spindle cell tumour","type":"exact"}],"termid":"MONDO:0003411","xrefs":{"Monarch":{"xref_id":"0003411"}}}


id: GO:1903257
data:
  {"annotated_genes":["SJAG_03856","SJAG_00832"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72671,105529],"is_not":false,"summary":null,"term":"GO:1903257"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of selenoneine.","definition_xrefs":["PMID:24828577","GO_REF:0000068","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino-acid betaine biosynthetic process","termid":"GO:0006578"},{"relation_name":"is_a","term_name":"modified histidine biosynthetic process","termid":"GO:0052703"},{"relation_name":"is_a","term_name":"selenoneine metabolic process","termid":"GO:1903256"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00832":null,"SJAG_03856":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"selenoneine biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"L-selenoneine biosynthetic process","type":"narrow"},{"name":"selenoneine anabolism","type":"exact"},{"name":"selenoneine biosynthesis","type":"exact"},{"name":"selenoneine formation","type":"exact"},{"name":"selenoneine synthesis","type":"exact"}],"termid":"GO:1903257","terms_by_termid":{"GO:1903257":null}}


id: MONDO:0021168
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare benign slow growing adipose tissue tumor, characterized by the presence of polygonal brown fat cells with multivacuolated and/or granular cytoplasm. The tumor is usually painless and is most often seen in young adults.","definition_xrefs":["NCIT:C3702"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipoma","termid":"MONDO:0005106"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hibernoma","secondary_identifiers":["MEDGEN:61456","ICDO:8880/0","UMLS:C0205822","SCTID:404064001"],"synonyms":[{"name":"Brown fat neoplasm","type":"exact"},{"name":"Brown fat tumor","type":"exact"},{"name":"Brown fat tumour","type":"exact"},{"name":"fetal fat cell lipoma","type":"exact"},{"name":"foetal fat cell lipoma","type":"exact"},{"name":"hibernoma","type":"exact"},{"name":"hibernoma, benign","type":"exact"}],"termid":"MONDO:0021168","xrefs":{"Monarch":{"xref_id":"0021168"}}}


id: PBO:0040008
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ADP ribosylation factor like GTPase 16","termid":"PBO:0040008"}


id: PBO:0052456
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KLF transcription factor 7","termid":"PBO:0052456"}


id: RO:0002629
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Process(P1) directly postively regulates process(P2) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2).  For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P1 directly positively regulates P2.","direct_ancestors":[{"relation_name":"is_a","term_name":"positively_regulates","termid":"RO:0002213"},{"relation_name":"is_a","term_name":"directly_regulates","termid":"RO:0002578"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"directly_positively_regulates","termid":"RO:0002629"}


id: FYPO:0002442
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the site of cell division is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization during vegetative growth","termid":"FYPO:0000644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0001320","FYPO:0000257","FYPO:0001312"],"is_obsolete":false,"name":"normal protein localization to cell division site","synonyms":[{"name":"normal protein localisation to cell division site","type":"exact"},{"name":"normal protein localization to cell division site during mitotic cell cycle","type":"related"},{"name":"normal protein localization to cell division site during vegetative growth","type":"exact"},{"name":"normal protein recruitment to cell division site","type":"related"}],"termid":"FYPO:0002442"}


id: PBO:0073408
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SET pseudogene 11","termid":"PBO:0073408"}


id: MONDO:0008085
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete neuropathy, hereditary sensorimotor, with upper motor neuron, visual pathway and autonomic disturbance (obsolete MONDO:0008085)","secondary_identifiers":["MESH:C563517","OMIM:162380"],"synonyms":[{"name":"neuropathy, hereditary sensorimotor, with upper motor neuron, visual pathway and autonomic disturbance","type":"exact"}],"termid":"MONDO:0008085","xrefs":{"Monarch":{"xref_id":"0008085"}}}


id: PBO:0081523
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 432","termid":"PBO:0081523"}


id: PR:O13656
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A mitochondrial import receptor subunit TOM40 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02828"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial import receptor subunit tom40 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC27B12.13","secondary_identifiers":["UniProtKB:O13656"],"synonyms":[{"name":"Spom972h-TOMM40","type":"exact"},{"name":"translocase of outer membrane 40 kDa subunit (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13656"}


id: PBO:0064934
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PPT2-EGFL8 readthrough (NMD candidate)","termid":"PBO:0064934"}


id: PBO:0072288
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S24 pseudogene 6","termid":"PBO:0072288"}


id: PBO:0111904
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LEMD3 domain","termid":"PBO:0111904"}


id: PBO:0060538
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-acetyltransferase pseudogene","termid":"PBO:0060538"}


id: SO:1000103
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000103 sequence_variant_decreasing_level_of_translation_product (obsolete SO:1000103)","synonyms":[{"name":"mutationdecreasing level of translation product","type":"related"},{"name":"sequence variant decreasing level of translation product","type":"exact"}],"termid":"SO:1000103"}


id: MONDO:0012428
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kyphoscoliosis 1","secondary_identifiers":["MESH:C565711","OMIM:610170","UMLS:C1857795","MEDGEN:347550"],"synonyms":[{"name":"KYPSC1","type":"exact"},{"name":"kyphoscoliosis 1","type":"exact"}],"termid":"MONDO:0012428","xrefs":{"Monarch":{"xref_id":"0012428"}}}


id: PBO:0000800
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"below 100 amino acid size threshold","termid":"PBO:0000800"}


id: PBO:0076043
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine kinase 40","termid":"PBO:0076043"}


id: MONDO:0005755
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Viral disease of horses caused by the equine infectious anemia virus (eiav; infectious anemia virus, equine). It is characterized by intermittent fever, weakness, and anemia. Chronic infection consists of acute episodes with remissions.","definition_xrefs":["MESH:D004859"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral infectious disease, non-human animal","termid":"MONDO:0700053"},{"relation_name":"is_a","term_name":"equine neoplasm","termid":"MONDO:0700170"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"equine infectious anemia","secondary_identifiers":["EFO:0007263","NCIT:C84694"],"termid":"MONDO:0005755","xrefs":{"Monarch":{"xref_id":"0005755"}}}


id: GO:0008986
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + H2O + pyruvate = AMP + 2 H+ + phosphate + phosphoenolpyruvate.","definition_xrefs":["RHEA:11364"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, paired acceptors","termid":"GO:0016781"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016301"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674","GO:0016301"],"is_obsolete":false,"name":"pyruvate, water dikinase activity","secondary_identifiers":["MetaCyc:PEPSYNTH-RXN","KEGG_REACTION:R00199","EC:2.7.9.2"],"synonyms":[{"name":"ATP:pyruvate, water phosphotransferase activity","type":"related"},{"name":"PEP synthase activity","type":"exact"},{"name":"PEP synthetase activity","type":"related"},{"name":"phoephoenolpyruvate synthetase activity","type":"related"},{"name":"phosphoenolpyruvate synthase activity","type":"related"},{"name":"phosphoenolpyruvic synthase activity","type":"related"},{"name":"phosphopyruvate synthetase activity","type":"related"},{"name":"pyruvate,water dikinase activity","type":"related"},{"name":"pyruvate-water dikinase (phosphorylating)","type":"related"},{"name":"water pyruvate dikinase activity","type":"exact"}],"termid":"GO:0008986"}


id: GO:1902931
data:
  {"annotated_genes":["SJAG_02104"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95726],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010895"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of alcohol biosynthetic process.","definition_xrefs":["GOC:TermGenie","PMID:23332010","GO_REF:0000058","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of biosynthetic process","termid":"GO:0009890"},{"relation_name":"is_a","term_name":"negative regulation of small molecule metabolic process","termid":"GO:0062014"},{"relation_name":"is_a","term_name":"regulation of alcohol biosynthetic process","termid":"GO:1902930"},{"relation_name":"negatively_regulates","term_name":"alcohol biosynthetic process","termid":"GO:0046165"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02104":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"negative regulation of alcohol biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of alcohol anabolism","type":"exact"},{"name":"down regulation of alcohol biosynthesis","type":"exact"},{"name":"down regulation of alcohol biosynthetic process","type":"exact"},{"name":"down regulation of alcohol formation","type":"exact"},{"name":"down regulation of alcohol synthesis","type":"exact"},{"name":"down-regulation of alcohol anabolism","type":"exact"},{"name":"down-regulation of alcohol biosynthesis","type":"exact"},{"name":"down-regulation of alcohol biosynthetic process","type":"exact"},{"name":"down-regulation of alcohol formation","type":"exact"},{"name":"down-regulation of alcohol synthesis","type":"exact"},{"name":"downregulation of alcohol anabolism","type":"exact"},{"name":"downregulation of alcohol biosynthesis","type":"exact"},{"name":"downregulation of alcohol biosynthetic process","type":"exact"},{"name":"downregulation of alcohol formation","type":"exact"},{"name":"downregulation of alcohol synthesis","type":"exact"},{"name":"inhibition of alcohol anabolism","type":"narrow"},{"name":"inhibition of alcohol biosynthesis","type":"narrow"},{"name":"inhibition of alcohol biosynthetic process","type":"narrow"},{"name":"inhibition of alcohol formation","type":"narrow"},{"name":"inhibition of alcohol synthesis","type":"narrow"},{"name":"negative regulation of alcohol anabolism","type":"exact"},{"name":"negative regulation of alcohol biosynthesis","type":"exact"},{"name":"negative regulation of alcohol formation","type":"exact"},{"name":"negative regulation of alcohol synthesis","type":"exact"},{"name":"negative regulation of solventogenesis","type":"broad"}],"termid":"GO:1902931","terms_by_termid":{"GO:0010895":null}}


id: MONDO:0014458
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Fanconi syndrome in which the cause of the disease is a mutation in the HNF4A gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maturity-onset diabetes of the young","termid":"MONDO:0018911"},{"relation_name":"is_a","term_name":"inherited Fanconi renotubular syndrome","termid":"MONDO:0100238"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005015"},{"rel_name":"is_a","termid":"MONDO:0019254"},{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0019254","MONDO:0037792","MONDO:0004335","MONDO:0005066","MONDO:0005015","MONDO:0005240"],"is_obsolete":false,"name":"Fanconi renotubular syndrome 4 with maturity-onset diabetes of the young","secondary_identifiers":["MEDGEN:863399","OMIM:616026","DOID:0080760","UMLS:C4014962","GARD:16048"],"synonyms":[{"name":"FRTS4","type":"related"},{"name":"FRTS4 with MODY","type":"related"},{"name":"Fanconi renotubular syndrome 4 with maturity-onset diabetes of the young","type":"exact"},{"name":"Fanconi syndrome caused by mutation in HNF4A","type":"exact"},{"name":"HNF4A Fanconi syndrome","type":"exact"},{"name":"fanconi renotubular syndrome 4, with maturity-onset diabetes of the young","type":"exact"}],"termid":"MONDO:0014458","xrefs":{"Monarch":{"xref_id":"0014458"}}}


id: PBO:0003557
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribose-phosphate pyrophosphokinase Prs5 (predicted)","termid":"PBO:0003557"}


id: FYPO:0002991
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which progression through the G1/S transition of the mitotic cell cycle begins earlier than normal, during a cellular response to hydrogen peroxide.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"premature mitotic G1/S phase transition","termid":"FYPO:0000398"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000631","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"premature mitotic G1/S phase transition during cellular response to hydrogen peroxide","synonyms":[{"name":"advanced mitotic G1/S phase transition during cellular response to hydrogen peroxide","type":"exact"},{"name":"premature G1/S phase transition during cellular response to hydrogen peroxide during mitotic cell cycle","type":"exact"},{"name":"premature cell cycle progression through mitotic G1/S phase transition during cellular response to hydrogen peroxide","type":"exact"},{"name":"premature mitotic G1/S phase transition during cellular response to H2O2","type":"exact"},{"name":"premature mitotic G1/S phase transition during cellular response to hydrogen peroxide during vegetative growth","type":"exact"}],"termid":"FYPO:0002991"}


id: GO:1990728
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex involved in the assembly of the mitotic checkpoint complex that in turn inhibits the anaphase promoting complex/cyclosome (APC/C). The MAD1 dimer recruits the open form of MAD2 (O-MAD2) turning it into the closed form (C-MAD2) upon binding. C-MAD2 inhibits CDC20, a member of the APC/C, upon release from the MAD1-MAD2 complex.","definition_xrefs":["GOC:bhm","PMID:12006501","PMID:22898774"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0032991"],"is_obsolete":false,"name":"mitotic spindle assembly checkpoint MAD1-MAD2 complex","synonyms":[{"name":"MAD1-MAD2 complex","type":"exact"}],"termid":"GO:1990728"}


id: PBO:0029024
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_chromatin_silencing_at_silent_mating-type_cassette","termid":"PBO:0029024"}


id: SO:0001891
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A feature amplification of a region containing a regulatory region.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"feature_amplification","termid":"SO:0001880"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"regulatory_region_amplification","secondary_identifiers":["http:www.ensembl.org/info/genome/variation/predicted_data.html#consequences"],"synonyms":[{"name":"VEP:regulatory_region_amplification","type":"exact"},{"name":"regulatory region amplification","type":"exact"}],"termid":"SO:0001891"}


id: PBO:0046724
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ecotropic viral integration site 2B","termid":"PBO:0046724"}


id: PomGeneEx:0000024
data:
  {"annotation_feature_type":"gene","cv_name":"PomGeneExProt","definition":"A gene expression qualifier that indicates that a protein is present at levels that vary under two or more sets of conditions or over a time course.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fluctuates","termid":"PomGeneEx:0000008"},{"relation_name":"is_a","term_name":"protein expression level","termid":"PomGeneEx:0000010"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein level fluctuates","synonyms":[{"name":"fluctuating protein level","type":"exact"},{"name":"protein expression fluctuates","type":"exact"}],"termid":"PomGeneEx:0000024"}


id: PBO:0065932
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rac family small GTPase 1 pseudogene 6","termid":"PBO:0065932"}


id: GO:1900790
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of pseurotin A.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lactam biosynthetic process","termid":"GO:0072339"},{"relation_name":"is_a","term_name":"pseurotin A metabolic process","termid":"GO:1900788"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"pseurotin A biosynthetic process","synonyms":[{"name":"Pseurotin anabolism","type":"related"},{"name":"Pseurotin biosynthesis","type":"related"},{"name":"Pseurotin biosynthetic process","type":"related"},{"name":"Pseurotin formation","type":"related"},{"name":"Pseurotin synthesis","type":"related"},{"name":"pseurotin A anabolism","type":"exact"},{"name":"pseurotin A biosynthesis","type":"exact"},{"name":"pseurotin A formation","type":"exact"},{"name":"pseurotin A synthesis","type":"exact"}],"termid":"GO:1900790"}


id: GO:0062210
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regeneration process by which a damaged or lost shoot regrows or re-differentiates. This process may occur via de-differentiation and subsequent reprogramming of somatic cells or activation of existing undifferentiated (meristematic) cells to produce a new shoot meristem and subsequently a new shoot.","definition_xrefs":["PMID:27143753"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regeneration","termid":"GO:0031099"},{"relation_name":"is_a","term_name":"shoot system development","termid":"GO:0048367"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"shoot regeneration","synonyms":[{"name":"shoot system regeneration","type":"exact"}],"termid":"GO:0062210"}


id: PBO:0078666
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Lys (anticodon TTT) 3-1","termid":"PBO:0078666"}


id: MONDO:0016583
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"volvulus of midgut","termid":"MONDO:0008666"},{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"familial intestinal malrotation-facial anomalies syndrome","secondary_identifiers":["Orphanet:2454"],"synonyms":[{"name":"Stalker Chitayat syndrome","type":"related"},{"name":"Stalker-Chitayat syndrome","type":"exact"},{"name":"intestinal malrotation facial anomalies familial type","type":"related"}],"termid":"MONDO:0016583","xrefs":{"Monarch":{"xref_id":"0016583"}}}


id: PBO:0039901
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho guanine nucleotide exchange factor 4","termid":"PBO:0039901"}


id: GO:0090186
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of pancreatic juice secretion, the regulated release of pancreatic juice by the exocrine pancreas into the upper part of the intestine.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of digestive system process","termid":"GO:0044058"},{"relation_name":"is_a","term_name":"regulation of body fluid levels","termid":"GO:0050878"},{"relation_name":"is_a","term_name":"regulation of secretion","termid":"GO:0051046"},{"relation_name":"regulates","term_name":"pancreatic juice secretion","termid":"GO:0030157"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of pancreatic juice secretion","termid":"GO:0090186"}


id: PR:O94290
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cwf29 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94290"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U2 snRNP component ist3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC887.05c","synonyms":[{"name":"RNA-binding protein cwf29 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-cwf29","type":"exact"},{"name":"complexed with cdc5 protein 29 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94290"}


id: PBO:0077190
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TLX1 neighbor","termid":"PBO:0077190"}


id: PBO:0058490
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 5684","termid":"PBO:0058490"}


id: PBO:0081631
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 560","termid":"PBO:0081631"}


id: PBO:0053667
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 845","termid":"PBO:0053667"}


id: PBO:0046303
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EN2 divergent transcript","termid":"PBO:0046303"}


id: GO:0120276
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cerebral blood circulation.","definition_xrefs":["PMID:25397684","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of blood circulation","termid":"GO:1903522"},{"relation_name":"regulates","term_name":"cerebral blood circulation","termid":"GO:0120275"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cerebral blood circulation","synonyms":[{"name":"regulation of cerebrum blood circulation","type":"exact"},{"name":"regulation of telencephalon blood circulation","type":"exact"}],"termid":"GO:0120276"}


id: GO:0047416
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + N-acetylarylalkylamine = acetate + arylalkylamine.","definition_xrefs":["EC:3.5.1.76","MetaCyc:3.5.1.76-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016810"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0016810","GO:0003674"],"is_obsolete":false,"name":"arylalkyl acylamidase activity","secondary_identifiers":["RHEA:10352"],"synonyms":[{"name":"N-acetylarylalkylamine amidohydrolase activity","type":"related"},{"name":"aralkyl acylamidase activity","type":"related"}],"termid":"GO:0047416"}


id: GO:0050616
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: loganin + NADPH + H+ + O2 = secologanin + NADP+ + 2 H2O.","definition_xrefs":["MetaCyc:1.3.3.9-RXN","EC:1.14.19.62"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor","termid":"GO:0016634"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"secologanin synthase activity","secondary_identifiers":["RHEA:20585"],"synonyms":[{"name":"loganin:oxygen oxidoreductase (ring-cleaving)","type":"related"}],"termid":"GO:0050616"}


id: PBO:0062504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 8 subfamily G member 5","termid":"PBO:0062504"}


id: PBO:0041138
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"biotinidase","termid":"PBO:0041138"}


id: PBO:0084421
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Major isoform of tropomyosin; binds to and stabilizes actin cables and filaments, which direct polarized cell growth and the distribution of several organelles; acetylated by the NatB complex and acetylated form binds actin most efficiently; TPM1 has a paralog, TPM2, that arose from the whole genome duplication","termid":"PBO:0084421"}


id: PBO:0040089
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arylsulfatase family member I","termid":"PBO:0040089"}


id: PR:Q9HGL4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit TRM6 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR12945:SF0","OMA:SCHPO02386"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC800.08","secondary_identifiers":["UniProtKB:Q9HGL4"],"synonyms":[{"name":"Spom972h-TRMT6","type":"exact"},{"name":"general control non-derepressible protein 10 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"protein gcd10 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"tRNA(m1A58)-methyltransferase subunit trm6 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"tRNA(m1A58)MTase subunit trm6 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9HGL4"}


id: FYPO:0007968
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An inviable phenotype observed in the vegetative growth phase of the life cycle after normal chromosome separation in which pushing forces exerted by microtubules protruding from the spindle pole bodies displace one of the daughter nuclei to the site of cytokinesis. The septum then physically divides that nucleus into two parts, giving rise to inviable daughter cell.","definition_xrefs":["PMID:26031557","PomBase:mlr","PomBase:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cut following normal mitotic chromosome condensation","termid":"FYPO:0001055"},{"relation_name":"output_of","term_name":"long mitotic spindle microtubules protruding beyond spindle pole body","termid":"FYPO:0003787"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000120"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0000641"},{"rel_name":"has_part","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0002399"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"output_of","termid":"FYPO:0002403"},{"rel_name":"has_part","termid":"FYPO:0000631"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000032"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000631","FYPO:0002399","FYPO:0000002","FYPO:0000641","FYPO:0002403","FYPO:0001985","FYPO:0000120","FYPO:0000337","FYPO:0000004","FYPO:0000032","FYPO:0005447"],"is_obsolete":false,"name":"cut with mitotic spindle microtubules protruding beyond spindle pole body","termid":"FYPO:0007968"}


id: FYECO:0000235
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which a microtubule depolymerizing drug was added to the medium or assay buffer.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ microtubule depolymerizing drugs","synonyms":[{"name":"+ MBC","type":"narrow"}],"termid":"FYECO:0000235"}


id: MONDO:1011104
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Renal agenesis that occurs in rabbit.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"renal agenesis, non-human animal","termid":"MONDO:1010272"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"renal agenesis, rabbit","secondary_identifiers":["OMIA:002007-9986"],"termid":"MONDO:1011104","xrefs":{"Monarch":{"xref_id":"1011104"}}}


id: PBO:0077384
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 125","termid":"PBO:0077384"}


id: GO:1902134
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of (+)-secoisolariciresinol.","definition_xrefs":["PMID:15949826","GOC:TermGenie","PMID:9872995"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenol-containing compound catabolic process","termid":"GO:0019336"},{"relation_name":"is_a","term_name":"diol catabolic process","termid":"GO:0034313"},{"relation_name":"is_a","term_name":"lignan catabolic process","termid":"GO:0046273"},{"relation_name":"is_a","term_name":"(+)-secoisolariciresinol metabolic process","termid":"GO:1902133"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0044281","GO:0019748","GO:0008150"],"is_obsolete":false,"name":"(+)-secoisolariciresinol catabolic process","synonyms":[{"name":"(+)-secoisolariciresinol breakdown","type":"exact"},{"name":"(+)-secoisolariciresinol catabolism","type":"exact"},{"name":"(+)-secoisolariciresinol degradation","type":"exact"}],"termid":"GO:1902134"}


id: MONDO:1012069
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"dystrophic epidermolysis bullosa, non-human animal","termid":"MONDO:1011737"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dystrophic epidermolysis bullosa, domestic cat","secondary_identifiers":["OMIA:000341-9685"],"termid":"MONDO:1012069","xrefs":{"Monarch":{"xref_id":"1012069"}}}


id: PBO:0042828
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centrin 1","termid":"PBO:0042828"}


id: GO:0048258
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: NADP+ + 3-dehydro-alpha-D-glucose = NADPH + alpha-D-glucose.","definition_xrefs":["MetaCyc:KETOGLUCOSE-REDUCTASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"3-ketoglucose-reductase activity","termid":"GO:0048258"}


id: MONDO:0015342
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Acute transverse myelitis (ATM) is an inflammatory demyelinating disorder of the spinal cord that can be either idiopathic (IATM) or secondary to a known cause (SATM).","definition_xrefs":["Orphanet:139417"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myelitis","termid":"MONDO:0002565"},{"relation_name":"is_a","term_name":"acute disease","termid":"MONDO:0020683"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acute transverse myelitis","secondary_identifiers":["UMLS:C0270627","MEDGEN:82847","NCIT:C128378","ICD9:323.9","MESH:D009188","GARD:19913","SCTID:47000000","ICD9:341.20"],"termid":"MONDO:0015342","xrefs":{"Monarch":{"xref_id":"0015342"}}}


id: PBO:0050467
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HOX transcript antisense RNA","termid":"PBO:0050467"}


id: GO:0019184
data:
  {"annotated_genes":["SJAG_00469","SJAG_03494","SJAG_04032","SJAG_01351","SJAG_00792","SJAG_04031","SJAG_02599","SJAG_00988"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[107315,59534,95956],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031169"},{"annotations":[110372,80535,57850,79212],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006750"},{"annotations":[95902],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:1905569"}]},"cv_name":"biological_process","definition":"The biosynthetic process in which peptide bond formation occurs in the absence of the translational machinery. Examples include the synthesis of antibiotic peptides, and glutathione.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide biosynthetic process","termid":"GO:0043043"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00469":null,"SJAG_00792":null,"SJAG_00988":null,"SJAG_01351":null,"SJAG_02599":null,"SJAG_03494":null,"SJAG_04031":null,"SJAG_04032":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"nonribosomal peptide biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"non-ribosomal peptide biosynthesis","type":"exact"},{"name":"non-ribosomal peptide biosynthetic process","type":"exact"},{"name":"non-ribosomal peptide formation","type":"exact"},{"name":"non-ribosomal peptide synthesis","type":"exact"},{"name":"nonribosomal peptide anabolism","type":"exact"},{"name":"nonribosomal peptide biosynthesis","type":"exact"},{"name":"nonribosomal peptide formation","type":"exact"},{"name":"nonribosomal peptide synthesis","type":"exact"},{"name":"nonribosomal peptide synthetase","type":"related"}],"termid":"GO:0019184","terms_by_termid":{"GO:0006750":null,"GO:0031169":null,"GO:1905569":null}}


id: PR:Q9Y7S6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A kynurenine/alpha-aminoadipate aminotransferase, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO05066"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aromatic amino acid aminotransferase C569.07 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC569.07","secondary_identifiers":["UniProtKB:Q9Y7S6"],"synonyms":[{"name":"Spom972h-AADAT","type":"exact"}],"termid":"PR:Q9Y7S6"}


id: GO:0043751
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (polyphosphate)n + AMP = (polyphosphate)n-1 + ADP.","definition_xrefs":["PMID:11237733"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, phosphate group as acceptor","termid":"GO:0016776"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"polyphosphate:AMP phosphotransferase activity","synonyms":[{"name":"PAP","type":"exact"},{"name":"PPT","type":"broad"}],"termid":"GO:0043751"}


id: PBO:0001958
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptionally regulates mid2","termid":"PBO:0001958"}


id: FYPO:0006853
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the medial cortex is increased during mitotic telophase.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein localization to medial cortex during vegetative growth","termid":"FYPO:0001677"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"increased protein localization to medial cortex during mitotic telophase","synonyms":[{"name":"increased protein localisation to medial cortex during mitotic telophase","type":"exact"},{"name":"increased protein localization to medial cortex during telophase of mitotic cell cycle","type":"related"},{"name":"increased protein localization to medial ring during mitotic telophase","type":"exact"}],"termid":"FYPO:0006853"}


id: GO:0103039
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2 S-adenosyl-L-methionine + a [ribosomal protein S12] L-aspartate89 + a sulfurated [sulfur carrier] + a reduced electron acceptor = S-adenosyl-L-homocysteine + L-methionine + 5'-deoxyadenosine + 2 H+ + a [ribosomal protein S12] 3-methylthio-L-aspartate89 + an unsulfurated [sulfur carrier] + an oxidized electron acceptor.","definition_xrefs":["EC:2.8.4.4","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methylthiotransferase activity","termid":"GO:0035596"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a protein","termid":"GO:0140096"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016782"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0016740","GO:0140096","GO:0016782","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"protein methylthiotransferase activity","secondary_identifiers":["MetaCyc:RXN0-6366","RHEA:37087"],"termid":"GO:0103039"}


id: GO:0004749
data:
  {"annotated_genes":["SJAG_03811","SJAG_04882","SJAG_04970"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[64372,74176,75625],"is_not":false,"summary":null,"term":"GO:0004749"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: D-ribose 5-phosphate + ATP = 5-phospho-alpha-D-ribose 1-diphosphate + AMP + 2 H+.","definition_xrefs":["RHEA:15609"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diphosphotransferase activity","termid":"GO:0016778"}],"gene_count":3,"genes_by_uniquename":{"SJAG_03811":null,"SJAG_04882":null,"SJAG_04970":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"ribose phosphate diphosphokinase activity","references_by_uniquename":{"GO_REF:0000003":null,"GO_REF:0000033":null},"secondary_identifiers":["EC:2.7.6.1","Reactome:R-HSA-73580","KEGG_REACTION:R01049","Reactome:R-HSA-111215","MetaCyc:PRPPSYN-RXN"],"synonyms":[{"name":"5-phosphoribose pyrophosphorylase activity","type":"related"},{"name":"5-phosphoribosyl-1-pyrophosphate synthetase activity","type":"related"},{"name":"5-phosphoribosyl-alpha-1-pyrophosphate synthetase activity","type":"related"},{"name":"ATP:D-ribose-5-phosphate diphosphotransferase activity","type":"related"},{"name":"PP-ribose P synthetase activity","type":"related"},{"name":"PPRibP synthetase activity","type":"related"},{"name":"PRPP synthetase activity","type":"related"},{"name":"phosphoribosyl diphosphate synthetase activity","type":"related"},{"name":"phosphoribosyl pyrophosphate synthetase activity","type":"related"},{"name":"phosphoribosyl-diphosphate synthetase activity","type":"related"},{"name":"phosphoribosylpyrophosphate synthase activity","type":"related"},{"name":"phosphoribosylpyrophosphate synthetase activity","type":"related"},{"name":"pyrophosphoribosylphosphate synthetase activity","type":"related"},{"name":"ribophosphate pyrophosphokinase activity","type":"related"},{"name":"ribose-5-phosphate pyrophosphokinase activity","type":"related"},{"name":"ribose-phosphate diphosphokinase activity","type":"related"},{"name":"ribose-phosphate pyrophosphokinase activity","type":"exact"}],"termid":"GO:0004749","terms_by_termid":{"GO:0004749":null}}


id: PR:Q9UTI7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A thymidylate synthase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11549:SF2","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thymidylate synthase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC15E1.04","secondary_identifiers":["UniProtKB:Q9UTI7"],"synonyms":[{"name":"Spom972h-TYMS","type":"exact"},{"name":"TS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"TSase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UTI7"}


id: PATO:0000195
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000195 startle response (obsolete PATO:0000195)","termid":"PATO:0000195"}


id: PR:O74359
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC28E12.02 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74359"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 60 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC28E12.02","synonyms":[{"name":"Spom972h-SPBC28E12.02","type":"exact"}],"termid":"PR:O74359"}


id: MONDO:0010665
data:
  {"annotated_genes":["SJAG_01581"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86893],"is_not":false,"summary":null,"term":"MONDO:0010665"}]},"cv_name":"mondo","definition":"A very rare genetic disease characterized by intellectual disability, truncal obesity, gynecomastia, hypogonadism, dysmorphic facial features, and short stature.","definition_xrefs":["Orphanet:3459"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete syndromic genetic obesity (obsolete MONDO:0016565)","termid":"MONDO:0016565"},{"relation_name":"excluded_subClassOf","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"},{"relation_name":"is_a","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01581":null},"genotype_count":0,"is_obsolete":false,"name":"Wilson-Turner syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0060814","GARD:5579","MESH:C536708","MEDGEN:333393","icd11.foundation:2015561482","OMIM:309585","SCTID:719834005","UMLS:C1839736"],"synonyms":[{"name":"MRXS6","type":"exact"},{"name":"WTS","type":"exact"},{"name":"Wilson Turner intellectual disability syndrome (formerly)","type":"related"},{"name":"Wilson Turner mental retardation syndrome (formerly)","type":"related"},{"name":"Wilson-TURNER X-linked intellectual disability syndrome","type":"related"},{"name":"Wilson-TURNER X-linked mental retardation syndrome","type":"related"},{"name":"Wilson-Turner syndrome, X-linked recessive","type":"exact"},{"name":"X-linked intellectual disability - gynecomastia - obesity","type":"related"},{"name":"X-linked intellectual disability-gynecomastia-obesity syndrome","type":"exact"},{"name":"intellectual disability, X-linked, syndromic 6","type":"exact"},{"name":"intellectual disability, X-linked, syndromic 6 (formerly)","type":"related"},{"name":"intellectual disability, X-linked, with gynecomastia and obesity","type":"exact"},{"name":"intellectual disability, X-linked, with gynecomastia and obesity (formerly)","type":"related"},{"name":"mental retardation, X-linked, syndromic 6","type":"exact"},{"name":"mental retardation, X-linked, syndromic 6 (formerly)","type":"related"},{"name":"mental retardation, X-linked, with gynecomastia and obesity","type":"exact"},{"name":"mental retardation, X-linked, with gynecomastia and obesity (formerly)","type":"related"}],"termid":"MONDO:0010665","terms_by_termid":{"MONDO:0010665":null},"xrefs":{"Monarch":{"xref_id":"0010665"}}}


id: PBO:0077884
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translocated promoter region, nuclear basket protein","termid":"PBO:0077884"}


id: PBO:0053954
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1259","termid":"PBO:0053954"}


id: PR:G2TRU6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC188.14 gene.","definition_xrefs":["UniProtKB:G2TRU6","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C188.14 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC188.14","synonyms":[{"name":"Spom972h-SPCC188.14","type":"exact"}],"termid":"PR:G2TRU6"}


id: GO:0061686
data:
  {"annotated_genes":["SJAG_00832"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[105531],"is_not":false,"summary":null,"term":"GO:0061686"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-cysteine + N-alpha,N-alpha,N-alpha-trimethyl-L-histidine (hercynine) + O2 = hercynylcysteine sulfoxide + H2O.","definition_xrefs":["RHEA:42704","PMID:24828577","PMID:4276459","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with oxygen as acceptor","termid":"GO:0046993"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00832":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"hercynylcysteine sulfoxide synthase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:1.21.3.10"],"synonyms":[{"name":"hercynylcysteine S-oxide synthase","type":"exact"},{"name":"hercynylcysteine sulfoxide synthase","type":"exact"}],"termid":"GO:0061686","terms_by_termid":{"GO:0061686":null}}


id: PBO:0060023
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND4 pseudogene 11","termid":"PBO:0060023"}


id: GO:0046655
data:
  {"annotated_genes":["SJAG_00815","SJAG_03275","SJAG_02225","SJAG_01126","SJAG_04156","SJAG_00106","SJAG_01198","SJAG_02408"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72812],"is_not":false,"summary":null,"term":"GO:0046655"},{"annotations":[110288,57105,108009,114381,106705,70621,61191],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046656"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving folic acid, pteroylglutamic acid. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"folic acid-containing compound metabolic process","termid":"GO:0006760"},{"relation_name":"is_a","term_name":"water-soluble vitamin metabolic process","termid":"GO:0006767"},{"relation_name":"is_a","term_name":"amide metabolic process","termid":"GO:0043603"},{"relation_name":"is_a","term_name":"dicarboxylic acid metabolic process","termid":"GO:0043648"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00106":null,"SJAG_00815":null,"SJAG_01126":null,"SJAG_01198":null,"SJAG_02225":null,"SJAG_02408":null,"SJAG_03275":null,"SJAG_04156":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006766"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006766","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"folic acid metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000043":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-196757"],"synonyms":[{"name":"folate metabolic process","type":"exact"},{"name":"folate metabolism","type":"exact"},{"name":"folic acid metabolism","type":"exact"},{"name":"vitamin B9 metabolic process","type":"exact"},{"name":"vitamin B9 metabolism","type":"exact"},{"name":"vitamin M metabolic process","type":"exact"},{"name":"vitamin M metabolism","type":"exact"}],"termid":"GO:0046655","terms_by_termid":{"GO:0046655":null,"GO:0046656":null}}


id: PBO:0054240
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1622","termid":"PBO:0054240"}


id: GO:0036335
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any biological process involved in the maintenance of the steady-state number of intestinal stem cells within a population of cells.","definition_xrefs":["PMID:22042863","PMID:22608824","GOC:nhn"],"direct_ancestors":[{"relation_name":"is_a","term_name":"homeostasis of number of cells","termid":"GO:0048872"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"intestinal stem cell homeostasis","synonyms":[{"name":"intestinal crypt stem cell homeostasis","type":"narrow"}],"termid":"GO:0036335"}


id: PBO:0050784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HTR2A antisense RNA 1","termid":"PBO:0050784"}


id: PBO:0044386
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 2 subfamily A member 13","termid":"PBO:0044386"}


id: GO:1990822
data:
  {"annotated_genes":["SJAG_04715","SJAG_00051","SJAG_01923","SJAG_04983","SJAG_03256","SJAG_04725","SJAG_03400","SJAG_01636","SJAG_01336","SJAG_02029","SJAG_02716","SJAG_00877"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[99211,105925,105926,105927,105928],"is_not":false,"summary":null,"term":"GO:1990822"},{"annotations":[92220],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034488"},{"annotations":[96447],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034490"},{"annotations":[105733],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090518"},{"annotations":[100699,64301],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903826"},{"annotations":[99226],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0089708"},{"annotations":[105736],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090513"},{"annotations":[105737,111979,104703],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090517"}]},"cv_name":"biological_process","definition":"The directed movement of basic amino acids from one side of a membrane to the other.","definition_xrefs":["GOC:dph","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid transmembrane transport","termid":"GO:0003333"},{"relation_name":"is_a","term_name":"basic amino acid transport","termid":"GO:0015802"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00051":null,"SJAG_00877":null,"SJAG_01336":null,"SJAG_01636":null,"SJAG_01923":null,"SJAG_02029":null,"SJAG_02716":null,"SJAG_03256":null,"SJAG_03400":null,"SJAG_04715":null,"SJAG_04725":null,"SJAG_04983":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"basic amino acid transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null},"termid":"GO:1990822","terms_by_termid":{"GO:0034488":null,"GO:0034490":null,"GO:0089708":null,"GO:0090513":null,"GO:0090517":null,"GO:0090518":null,"GO:1903826":null,"GO:1990822":null}}


id: PBO:0089952
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sphingolipid biosynthesis protein","termid":"PBO:0089952"}


id: MONDO:0009779
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autosomal recessive form of omodysplasia.","definition_xrefs":["MONDO:patterns/autosomal_recessive"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"omodysplasia","termid":"MONDO:0017136"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025"],"is_obsolete":false,"name":"autosomal recessive omodysplasia","secondary_identifiers":["MEDGEN:340513","GARD:4076","OMIM:258315","Orphanet:93329","SCTID:725166005","UMLS:C1850318","icd11.foundation:350802889","DOID:0080844"],"synonyms":[{"name":"OMOD1","type":"related"},{"name":"autosomal recessive omodysplasia","type":"exact"},{"name":"micromelic dysplasia congenita with dislocation of radius","type":"related"},{"name":"micromelic dysplasia, congenital, with dislocation of radius","type":"related"},{"name":"micromelic dysplasia-dislocation of radius syndrome","type":"exact"},{"name":"omodysplasia 1","type":"related"},{"name":"omodysplasia autosomal recessive","type":"related"},{"name":"omodysplasia generalised form","type":"related"},{"name":"omodysplasia generalized form","type":"related"},{"name":"omodysplasia type 1","type":"exact"},{"name":"omodysplasia, autosomal recessive","type":"exact"},{"name":"omodysplasia, generalised form","type":"related"},{"name":"omodysplasia, generalized form","type":"related"}],"termid":"MONDO:0009779","xrefs":{"Monarch":{"xref_id":"0009779"}}}


id: PBO:0068363
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 145","termid":"PBO:0068363"}


id: GO:0021766
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the hippocampus over time from its initial formation until its mature state.","definition_xrefs":["GOC:dgh","GO_REF:0000021","GOC:cls","GOC:dph","GOC:jid","UBERON:0002421","ISBN:0878937420"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"pallium development","termid":"GO:0021543"},{"relation_name":"part_of","term_name":"limbic system development","termid":"GO:0021761"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hippocampus development","synonyms":[{"name":"hippocampal formation development","type":"exact"}],"termid":"GO:0021766"}


id: PBO:0039568
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ANKRD62P1-PARP4P3 readthrough, transcribed pseudogene","termid":"PBO:0039568"}


id: GO:0022615
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The initial attachment of a protein to a target membrane, mediated by a proteins protruding from the target membrane. Docking requires only that the proteins come close enough to interact and adhere.","definition_xrefs":["GOC:isa_complete"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane docking","termid":"GO:0022406"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein to membrane docking","synonyms":[{"name":"protein-membrane docking","type":"exact"}],"termid":"GO:0022615"}


id: GO:0031436
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A heterodimeric complex comprising BRCA1 and BARD1, which possesses ubiquitin ligase activity and is involved in genome maintenance, possibly by functioning in surveillance for DNA damage.","definition_xrefs":["PMID:12787778"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear ubiquitin ligase complex","termid":"GO:0000152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"BRCA1-BARD1 complex","termid":"GO:0031436"}


id: PBO:0065419
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome 20S subunit beta 6","termid":"PBO:0065419"}


id: PBO:0004602
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin protease cofactor Glp1 (predicted)","termid":"PBO:0004602"}


id: MONDO:0011848
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"headache associated with sexual activity","secondary_identifiers":["UMLS:C0393754","OMIM:607504","ICD10CM:G44.82","MEDGEN:95989"],"synonyms":[{"name":"HSA","type":"related"},{"name":"benign sexual headache","type":"related"},{"name":"headache associated with sexual activity","type":"exact"}],"termid":"MONDO:0011848","xrefs":{"Monarch":{"xref_id":"0011848"}}}


id: PBO:0086161
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein required for recombination and meiotic nuclear division; forms a complex with Hop2p, which is involved in chromosome pairing and repair of meiotic double-strand breaks","termid":"PBO:0086161"}


id: PR:O13820
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- erg5 gene.","definition_xrefs":["UniProtKB:O13820","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 61 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC19A8.04","synonyms":[{"name":"C-22 sterol desaturase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-erg5","type":"exact"}],"termid":"PR:O13820"}


id: PBO:0042565
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDKN1A antisense RNA 1","termid":"PBO:0042565"}


id: GO:0033951
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of 1,4-beta-D-xylose residues from the reducing end of oligosaccharides.","definition_xrefs":["EC:3.2.1.156"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0016798","GO:0003824"],"is_obsolete":false,"name":"oligosaccharide reducing-end xylanase activity","secondary_identifiers":["MetaCyc:3.2.1.156-RXN"],"synonyms":[{"name":"Rex","type":"related"},{"name":"beta-D-xylopyranosyl-(1->4)-beta-D-xylopyranosyl-(1->4)-beta-D-xylopyranose reducing-end xylanase activity","type":"related"},{"name":"reducing end xylose-releasing exo-oligoxylanase activity","type":"related"}],"termid":"GO:0033951"}


id: PBO:0017579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3'-phosphoadenosine 5'-phosphosulfate/ 5'-adenylyl sulfate transmembrane transporter (predicted)","termid":"PBO:0017579"}


id: MONDO:0020156
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete syndromic ankyloblepharon (obsolete MONDO:0020156)","secondary_identifiers":["Orphanet:98565"],"termid":"MONDO:0020156","xrefs":{"Monarch":{"xref_id":"0020156"}}}


id: GO:0071827
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A protein-lipid complex subunit organization process that results in the formation, disassembly, or alteration of a plasma lipoprotein particle. A plasma lipoprotein particle is a spherical particle with a hydrophobic core of triglycerides and/or cholesterol esters, surrounded by an amphipathic monolayer of phospholipids, cholesterol and apolipoproteins.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal process","termid":"GO:0032501"},{"relation_name":"is_a","term_name":"protein-lipid complex organization","termid":"GO:0071825"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"plasma lipoprotein particle organization","secondary_identifiers":["Reactome:R-HSA-174824"],"synonyms":[{"name":"plasma lipoprotein particle organisation","type":"exact"}],"termid":"GO:0071827"}


id: GO:1990508
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Cyclin-dependent kinase complex which reversibly associates with the Mediator complex. In Saccharomyces cerevisiae it consists of SSN2, SSN3, SSN8 and SRB8.","definition_xrefs":["GOC:bhm","PMID:12200444"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear cyclin-dependent protein kinase holoenzyme complex","termid":"GO:0019908"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005634"],"is_obsolete":false,"name":"CKM complex","synonyms":[{"name":"CDK8 kinase module","type":"exact"},{"name":"SRB8-SRB11 complex","type":"exact"},{"name":"SRB8/9/10/11 complex","type":"exact"}],"termid":"GO:1990508"}


id: GO:0060179
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The specific behavior of a male organism that is associated with reproduction.","definition_xrefs":["GOC:pr","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mating behavior","termid":"GO:0007617"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"male mating behavior","termid":"GO:0060179"}


id: PBO:0090468
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial [2Fe-2S] cluster assembly and protein import chaperone Mge1","termid":"PBO:0090468"}


id: PBO:0029671
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-multiple_actomyosin_contractile_rings_present","termid":"PBO:0029671"}


id: PBO:0059147
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MPN domain containing","termid":"PBO:0059147"}


id: GO:2000553
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of T-helper 2 cell cytokine production.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of T cell cytokine production","termid":"GO:0002726"},{"relation_name":"is_a","term_name":"positive regulation of type 2 immune response","termid":"GO:0002830"},{"relation_name":"is_a","term_name":"regulation of T-helper 2 cell cytokine production","termid":"GO:2000551"},{"relation_name":"positively_regulates","term_name":"T-helper 2 cell cytokine production","termid":"GO:0035745"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of T-helper 2 cell cytokine production","synonyms":[{"name":"positive regulation of Th2 cell cytokine production","type":"exact"}],"termid":"GO:2000553"}


id: PBO:0043855
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CRACD like","termid":"PBO:0043855"}


id: PBO:0049200
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GRIK1 antisense RNA 1","termid":"PBO:0049200"}


id: PBO:0050606
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HSD17B1 antisense RNA 1","termid":"PBO:0050606"}


id: GO:0006195
data:
  {"annotated_genes":["SJAG_04487","SJAG_00605","SJAG_04870","SJAG_02481","SJAG_00461","SJAG_02369","SJAG_04048","SJAG_04192","SJAG_05314","SJAG_02796","SJAG_01310","SJAG_06622","SJAG_02135","SJAG_02945","SJAG_03091","SJAG_03660","SJAG_00685","SJAG_00027","SJAG_03903","SJAG_00839","SJAG_04495","SJAG_03373","SJAG_03828","SJAG_04334","SJAG_02107","SJAG_06621","SJAG_02785","SJAG_02009"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[81054],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1901911"},{"annotations":[118362],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006198"},{"annotations":[99868,111344,107374,100139,111340,107376,111341,111345,105284,79614,74188,111342,111343,118333,111346,107746,105543,107745,96380,107375],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061621"},{"annotations":[100866],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035863"},{"annotations":[90422],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061613"},{"annotations":[74146],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019677"},{"annotations":[74148],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006742"},{"annotations":[77909,74840],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:0045820"},{"annotations":[71751],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0006110"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.","definition_xrefs":["GOC:go_curators","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleotide metabolic process","termid":"GO:0006163"},{"relation_name":"is_a","term_name":"nucleotide catabolic process","termid":"GO:0009166"},{"relation_name":"is_a","term_name":"purine-containing compound catabolic process","termid":"GO:0072523"}],"gene_count":28,"genes_by_uniquename":{"SJAG_00027":null,"SJAG_00461":null,"SJAG_00605":null,"SJAG_00685":null,"SJAG_00839":null,"SJAG_01310":null,"SJAG_02009":null,"SJAG_02107":null,"SJAG_02135":null,"SJAG_02369":null,"SJAG_02481":null,"SJAG_02785":null,"SJAG_02796":null,"SJAG_02945":null,"SJAG_03091":null,"SJAG_03373":null,"SJAG_03660":null,"SJAG_03828":null,"SJAG_03903":null,"SJAG_04048":null,"SJAG_04192":null,"SJAG_04334":null,"SJAG_04487":null,"SJAG_04495":null,"SJAG_04870":null,"SJAG_05314":null,"SJAG_06621":null,"SJAG_06622":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0055086"],"is_obsolete":false,"name":"purine nucleotide catabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-74259"],"synonyms":[{"name":"purine nucleotide breakdown","type":"exact"},{"name":"purine nucleotide catabolism","type":"exact"},{"name":"purine nucleotide degradation","type":"exact"}],"termid":"GO:0006195","terms_by_termid":{"GO:0006110":null,"GO:0006198":null,"GO:0006742":null,"GO:0019677":null,"GO:0035863":null,"GO:0045820":null,"GO:0061613":null,"GO:0061621":null,"GO:1901911":null}}


id: PBO:0063052
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidylglycine alpha-amidating monooxygenase","termid":"PBO:0063052"}


id: GO:0015837
data:
  {"annotated_genes":["SJAG_00991","SJAG_03591","SJAG_03970","SJAG_05346","SJAG_04731","SJAG_02605"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[101130],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0072489"},{"annotations":[89900],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:1905533"},{"annotations":[95171,93581,100754,112495],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1905589"},{"annotations":[93582,95172,100755],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1905534"},{"annotations":[95173],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1905626"}]},"cv_name":"biological_process","definition":"The directed movement of amines, including polyamines, organic compounds containing one or more amino groups, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:ai","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nitrogen compound transport","termid":"GO:0071705"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00991":null,"SJAG_02605":null,"SJAG_03591":null,"SJAG_03970":null,"SJAG_04731":null,"SJAG_05346":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"amine transport","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"amine/polyamine transport","type":"related"}],"termid":"GO:0015837","terms_by_termid":{"GO:0072489":null,"GO:1905533":null,"GO:1905534":null,"GO:1905589":null,"GO:1905626":null}}


id: PBO:0039902
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARHGEF4 antisense RNA 1","termid":"PBO:0039902"}


id: PBO:0058047
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4268","termid":"PBO:0058047"}


id: GO:0047223
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: beta-D-galactosyl-1,3-(N-acetyl-D-glucosaminyl-1,6)-N-acetyl-D-galactosaminyl-R + UDP-N-acetyl-D-glucosamine = N-acetyl-beta-D-glucosaminyl-1,3-beta-D-galactosyl-1,3-(N-acetyl-beta-D-glucosaminyl-1,6)-N-acetyl-D-galactosaminyl-R + UDP.","definition_xrefs":["EC:2.4.1.146","MetaCyc:2.4.1.146-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylglucosaminyltransferase activity","termid":"GO:0008375"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a glycoprotein","termid":"GO:0140103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016757","GO:0140096","GO:0003824","GO:0016740"],"is_obsolete":false,"name":"beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity","secondary_identifiers":["Reactome:R-HSA-5617037","Reactome:R-HSA-5617096"],"synonyms":[{"name":"O-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase II activity","type":"related"},{"name":"UDP-N-acetyl-D-glucosamine:O-glycosyl-glycoprotein (N-acetyl-D-glucosamine to -D-galactose of beta-D-galactosyl-1,3-(N-acetyl-D-glucosaminyl-1,6)-N-acetyl-D-galactosaminyl-R) beta-1,3-N-acetyl-D-glucosaminyltransferase activity","type":"related"},{"name":"elongation 3-beta-GalNAc-transferase activity","type":"related"},{"name":"elongation 3beta-GalNAc-transferase activity","type":"related"},{"name":"uridine diphosphoacetylglucosamine-mucin beta(1->3)-acetylglucosaminyltransferase (elongating)","type":"related"}],"termid":"GO:0047223"}


id: MONDO:0007210
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Brachmann-de Lange-like facial changes with microcephaly, metatarsus adductus, and developmental delay","secondary_identifiers":["UMLS:C1862171","OMIM:112370","MEDGEN:396307","MESH:C566206"],"synonyms":[{"name":"Brachmann-de Lange-like facial changes with microcephaly, metatarsus adductus, and developmental delay","type":"exact"}],"termid":"MONDO:0007210","xrefs":{"Monarch":{"xref_id":"0007210"}}}


id: PBO:0072467
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S29 pseudogene 31","termid":"PBO:0072467"}


id: PR:Q9UTB0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC25B8.08 gene.","definition_xrefs":["UniProtKB:Q9UTB0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dilute domain-containing protein C25B8.08 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC25B8.08","synonyms":[{"name":"Spom972h-SPAC25B8.08","type":"exact"}],"termid":"PR:Q9UTB0"}


id: PBO:0081140
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZFP37 zinc finger protein","termid":"PBO:0081140"}


id: MONDO:0000611
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disease of cellular proliferation that results in abnormal growths in the body, which do not invade or destroy the surrounding tissue but, given enough time, will transform into a cancer.","definition_xrefs":["DOID:0060071"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neoplasm","termid":"MONDO:0005070"},{"relation_name":"is_a","term_name":"precancerous condition","termid":"MONDO:0021074"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre-malignant neoplasm","secondary_identifiers":["UMLS:C5817154","MEDGEN:1837212"],"termid":"MONDO:0000611","xrefs":{"Monarch":{"xref_id":"0000611"}}}


id: MONDO:1010428
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Atherosclerosis that occurs in rock pigeon.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bird disease","termid":"MONDO:0024905"},{"relation_name":"is_a","term_name":"atherosclerosis, non-human animal","termid":"MONDO:1010008"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"atherosclerosis, rock pigeon","secondary_identifiers":["OMIA:000080-8932"],"termid":"MONDO:1010428","xrefs":{"Monarch":{"xref_id":"1010428"}}}


id: PBO:0051567
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"interleukin 13 receptor subunit alpha 1","termid":"PBO:0051567"}


id: PR:Q9P332
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of any of the following genes in Schizosaccharomyces pombe 972h-: SPAC750.04c/SPAC977.02.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P332"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPF0742 protein C750.04c/C977.02 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC977.02","synonyms":[{"name":"Spom972h-SPAC977.02","type":"exact"}],"termid":"PR:Q9P332"}


id: GO:0097744
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The elimination of urate salt or uric acid from peritubular capillaries (or surrounding hemolymph in invertebrates) into the renal tubules to be incorporated subsequently into the urine.","definition_xrefs":["PMID:3906799","GOC:jl","PMID:25287933","Wikipedia:Renal_physiology#Secretion"],"direct_ancestors":[{"relation_name":"is_a","term_name":"renal tubular secretion","termid":"GO:0097254"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"renal urate salt excretion","synonyms":[{"name":"urate excretion","type":"broad"},{"name":"urate salt excretion","type":"broad"}],"termid":"GO:0097744"}


id: PBO:0059481
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"moesin pseudogene 1","termid":"PBO:0059481"}


id: GO:1901896
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of an ATPase-coupled calcium transmembrane transporter activity.","definition_xrefs":["GOC:BHF","PMID:19708671","GOC:TermGenie","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of ion transmembrane transporter activity","termid":"GO:0032414"},{"relation_name":"is_a","term_name":"positive regulation of ATP-dependent activity","termid":"GO:0032781"},{"relation_name":"is_a","term_name":"regulation of ATPase-coupled calcium transmembrane transporter activity","termid":"GO:1901894"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"positively_regulates","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0055085","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of ATPase-coupled calcium transmembrane transporter activity","synonyms":[{"name":"activation of ATP phosphohydrolase (Ca2+-transporting)","type":"exact"},{"name":"activation of Ca(2+)-transporting ATPase activity","type":"exact"},{"name":"activation of Ca2+-pumping ATPase activity","type":"exact"},{"name":"activation of Ca2+-transporting ATPase activity","type":"exact"},{"name":"activation of calcium ABC transporter","type":"narrow"},{"name":"activation of calcium efflux ATPase","type":"narrow"},{"name":"activation of calcium pump","type":"broad"},{"name":"activation of calcium transporting ATPase activity","type":"exact"},{"name":"activation of calcium-translocating P-type ATPase activity","type":"narrow"},{"name":"activation of calcium-transporting ATPase activity","type":"narrow"},{"name":"activation of plasma membrane Ca-ATPase","type":"narrow"},{"name":"activation of sarco(endo)plasmic reticulum Ca2+-ATPase","type":"narrow"},{"name":"activation of sarcoplasmic reticulum ATPase","type":"narrow"},{"name":"positive regulation of ATP phosphohydrolase (Ca2+-transporting)","type":"exact"},{"name":"positive regulation of Ca(2+)-transporting ATPase activity","type":"exact"},{"name":"positive regulation of Ca2+-pumping ATPase activity","type":"exact"},{"name":"positive regulation of Ca2+-transporting ATPase activity","type":"exact"},{"name":"positive regulation of calcium ABC transporter","type":"narrow"},{"name":"positive regulation of calcium efflux ATPase","type":"narrow"},{"name":"positive regulation of calcium pump","type":"broad"},{"name":"positive regulation of calcium transporting ATPase activity","type":"exact"},{"name":"positive regulation of calcium-translocating P-type ATPase activity","type":"narrow"},{"name":"positive regulation of calcium-transporting ATPase activity","type":"exact"},{"name":"positive regulation of plasma membrane Ca-ATPase","type":"narrow"},{"name":"positive regulation of sarco(endo)plasmic reticulum Ca2+-ATPase","type":"narrow"},{"name":"positive regulation of sarcoplasmic reticulum ATPase","type":"narrow"},{"name":"up regulation of ATP phosphohydrolase (Ca2+-transporting)","type":"exact"},{"name":"up regulation of Ca(2+)-transporting ATPase activity","type":"exact"},{"name":"up regulation of Ca2+-pumping ATPase activity","type":"exact"},{"name":"up regulation of Ca2+-transporting ATPase activity","type":"exact"},{"name":"up regulation of calcium ABC transporter","type":"narrow"},{"name":"up regulation of calcium efflux ATPase","type":"narrow"},{"name":"up regulation of calcium pump","type":"broad"},{"name":"up regulation of calcium transporting ATPase activity","type":"exact"},{"name":"up regulation of calcium-translocating P-type ATPase activity","type":"narrow"},{"name":"up regulation of calcium-transporting ATPase activity","type":"exact"},{"name":"up regulation of plasma membrane Ca-ATPase","type":"narrow"},{"name":"up regulation of sarco(endo)plasmic reticulum Ca2+-ATPase","type":"narrow"},{"name":"up regulation of sarcoplasmic reticulum ATPase","type":"narrow"},{"name":"up-regulation of ATP phosphohydrolase (Ca2+-transporting)","type":"exact"},{"name":"up-regulation of Ca(2+)-transporting ATPase activity","type":"exact"},{"name":"up-regulation of Ca2+-pumping ATPase activity","type":"exact"},{"name":"up-regulation of Ca2+-transporting ATPase activity","type":"exact"},{"name":"up-regulation of calcium ABC transporter","type":"narrow"},{"name":"up-regulation of calcium efflux ATPase","type":"narrow"},{"name":"up-regulation of calcium pump","type":"broad"},{"name":"up-regulation of calcium transporting ATPase activity","type":"exact"},{"name":"up-regulation of calcium-translocating P-type ATPase activity","type":"narrow"},{"name":"up-regulation of calcium-transporting ATPase activity","type":"exact"},{"name":"up-regulation of plasma membrane Ca-ATPase","type":"narrow"},{"name":"up-regulation of sarco(endo)plasmic reticulum Ca2+-ATPase","type":"narrow"},{"name":"up-regulation of sarcoplasmic reticulum ATPase","type":"narrow"},{"name":"upregulation of ATP phosphohydrolase (Ca2+-transporting)","type":"exact"},{"name":"upregulation of Ca(2+)-transporting ATPase activity","type":"exact"},{"name":"upregulation of Ca2+-pumping ATPase activity","type":"exact"},{"name":"upregulation of Ca2+-transporting ATPase activity","type":"exact"},{"name":"upregulation of calcium ABC transporter","type":"narrow"},{"name":"upregulation of calcium efflux ATPase","type":"narrow"},{"name":"upregulation of calcium pump","type":"broad"},{"name":"upregulation of calcium transporting ATPase activity","type":"exact"},{"name":"upregulation of calcium-translocating P-type ATPase activity","type":"narrow"},{"name":"upregulation of calcium-transporting ATPase activity","type":"exact"},{"name":"upregulation of plasma membrane Ca-ATPase","type":"narrow"},{"name":"upregulation of sarco(endo)plasmic reticulum Ca2+-ATPase","type":"narrow"},{"name":"upregulation of sarcoplasmic reticulum ATPase","type":"narrow"}],"termid":"GO:1901896"}


id: MONDO:0003220
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A carcinoma that arises from epithelial cells of the gall bladder","direct_ancestors":[{"relation_name":"is_a","term_name":"gallbladder cancer","termid":"MONDO:0005411"},{"relation_name":"is_a","term_name":"digestive system carcinoma","termid":"MONDO:0006181"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0002515"}],"interesting_parent_ids":["MONDO:0002515","MONDO:0004335","MONDO:0004992"],"is_obsolete":false,"name":"gallbladder carcinoma","secondary_identifiers":["EFO:1001956","SCTID:372140005","NCIT:C3844","UMLS:C0235782","DOID:4948","MEDGEN:116001"],"synonyms":[{"name":"Gall bladder carcinoma (adeno)","type":"exact"},{"name":"Gall bladder carcinoma (adenocarcinoma)","type":"exact"},{"name":"cancer of gallbladder","type":"exact"},{"name":"cancer of the gallbladder","type":"exact"},{"name":"carcinoma gallbladder","type":"exact"},{"name":"carcinoma of gall bladder","type":"exact"},{"name":"carcinoma of gallbladder","type":"exact"},{"name":"carcinoma of the gallbladder","type":"exact"},{"name":"gall bladder carcinoma","type":"exact"},{"name":"gallbladder cancer","type":"broad"},{"name":"gallbladder carcinoma","type":"exact"}],"termid":"MONDO:0003220","xrefs":{"Monarch":{"xref_id":"0003220"}}}


id: PBO:0027681
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_regulation_of_transcription","termid":"PBO:0027681"}


id: MONDO:0000267
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete cryptogenic organizing pneumonia (obsolete MONDO:0000267)","termid":"MONDO:0000267","xrefs":{"Monarch":{"xref_id":"0000267"}}}


id: PBO:0016619
data:
  {"annotation_feature_type":"gene","cv_name":"feature_cvtermprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"quant_gene_ex_copies_per_cell","termid":"PBO:0016619"}


id: MONDO:0005803
data:
  {"annotated_genes":["SJAG_04334","SJAG_03266","SJAG_00154","SJAG_04495"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87381],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0859362"},{"annotations":[88307,88306],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011236"},{"annotations":[88635],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011717"}]},"cv_name":"mondo","definition":"An inherited autosomal recessive syndrome characterized by the disorganized formation of new islets in the pancreas and congenital hyperinsulinism. It is due to focal hyperplasia of pancreatic islet cells budding off from the ductal structures and forming new islets of langerhans. Mutations in the islet cells involve the potassium channel gene kcnj11 or the atp-binding cassette transporter gene abcc8, both on chromosome 11.","definition_xrefs":["MESH:D046768"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endocrine system disorder","termid":"MONDO:0005151"},{"relation_name":"is_a","term_name":"inborn carbohydrate metabolic disorder","termid":"MONDO:0019214"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00154":null,"SJAG_03266":null,"SJAG_04334":null,"SJAG_04495":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0037792"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0037792"],"is_obsolete":false,"name":"hyperinsulinemic hypoglycemia","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["NANDO:2200399","HP:0000825","DOID:13317","Orphanet:443095","SCTID:42681006","OMIMPS:256450","EFO:0007318","NCIT:C4375","UMLS:C1864903","GARD:21849","MEDGEN:351247","NANDO:2100143"],"synonyms":[{"name":"hyperinsulinemia hypoglycemia","type":"exact"},{"name":"hyperinsulinemic hypoglycemia (disease)","type":"exact"},{"name":"islet cell hyperplasia","type":"exact"},{"name":"nesidioblastosis","type":"related"},{"name":"persistent hyperinsulinemia hypoglycemia of infancy","type":"exact"}],"termid":"MONDO:0005803","terms_by_termid":{"MONDO:0011236":null,"MONDO:0011717":null,"MONDO:0859362":null},"xrefs":{"Monarch":{"xref_id":"0005803"}}}


id: GO:0035476
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The orderly movement of angioblasts, cells involved in blood vessel morphogenesis.","definition_xrefs":["GOC:dgh","PMID:19815777"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell migration","termid":"GO:0016477"},{"relation_name":"part_of","term_name":"blood vessel morphogenesis","termid":"GO:0048514"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"angioblast cell migration","termid":"GO:0035476"}


id: MONDO:0037746
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant neoplasm that arises from the vagina and is characterized by the presence of an epithelial and a mesenchymal component. This category includes adenosarcoma, carcinosarcoma, and malignant mixed tumor resembling synovial sarcoma.","definition_xrefs":["NCIT:C40276"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vaginal cancer","termid":"MONDO:0001402"},{"relation_name":"is_a","term_name":"malignant mixed neoplasm","termid":"MONDO:0005853"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"malignant vaginal mixed epithelial and mesenchymal neoplasm","secondary_identifiers":["UMLS:C1512974","MEDGEN:307683"],"synonyms":[{"name":"malignant vaginal mixed epithelial and mesenchymal neoplasm","type":"exact"},{"name":"malignant vaginal mixed epithelial and mesenchymal tumor","type":"exact"},{"name":"malignant vaginal mixed epithelial and mesenchymal tumour","type":"exact"}],"termid":"MONDO:0037746","xrefs":{"Monarch":{"xref_id":"0037746"}}}


id: GO:0140800
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: 4-aminobutanoate(out) + H+(in) = 4-aminobutanoate(in) + H+(out).","definition_xrefs":["PMID:26912364","PMID:27601664","PMID:16701208"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proton transmembrane transporter activity","termid":"GO:0015078"},{"relation_name":"is_a","term_name":"gamma-aminobutyric acid transmembrane transporter activity","termid":"GO:0015185"},{"relation_name":"is_a","term_name":"secondary active monocarboxylate transmembrane transporter activity","termid":"GO:0015355"},{"relation_name":"is_a","term_name":"amino acid:monoatomic cation antiporter activity","termid":"GO:0140848"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"gamma-aminobutyric acid:proton antiporter activity","termid":"GO:0140800"}


id: PBO:0078898
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Gln (CTG) 8-2","termid":"PBO:0078898"}


id: PBO:0089957
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methyltransferase, human CARNMT1 ortholog","termid":"PBO:0089957"}


id: PBO:0042578
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin dependent kinase inhibitor 2D","termid":"PBO:0042578"}


id: PBO:0063667
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"post-GPI attachment to proteins GalNAc transferase 4","termid":"PBO:0063667"}


id: GO:0141028
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an organism effects a change that impairs the structure or function of the host microtubule cytoskeleton. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["PMID:21692747","PMID:26220855"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host cytoskeleton","termid":"GO:0052039"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated perturbation of host microtubule cytoskeleton","synonyms":[{"name":"disruption by symbiont of host microtubule cytoskeleton","type":"related"},{"name":"modification by symbiont of host microtubule cytoskeleton","type":"related"},{"name":"perturbation by symbiont of host microtubule cytoskeleton","type":"exact"}],"termid":"GO:0141028"}


id: GO:0021863
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which neuroepithelial cells in the neural tube acquire specialized structural and/or functional features of basal progenitor cells, neuroblasts that lose their contacts with the ventricular surface. Differentiation includes the processes involved in commitment of a cell to a specific fate.","definition_xrefs":["GOC:dph","GOC:dgh","PMID:16226447","GOC:cls","GOC:jid","GO_REF:0000021"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuroblast differentiation","termid":"GO:0014016"},{"relation_name":"part_of","term_name":"forebrain generation of neurons","termid":"GO:0021872"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"forebrain neuroblast differentiation","synonyms":[{"name":"abventricular progenitor cell differentiation","type":"exact"},{"name":"intermediate progenitor cell differentiation","type":"exact"},{"name":"non-surface dividing progenitor cell differentiation","type":"exact"}],"termid":"GO:0021863"}


id: PBO:0073263
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin 7 pseudogene 7","termid":"PBO:0073263"}


id: GO:1902439
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vanadate(3-) stimulus.","definition_xrefs":["GOC:di","GOC:TermGenie","PMID:7489911"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to oxygen-containing compound","termid":"GO:1901701"},{"relation_name":"is_a","term_name":"response to vanadate(3-)","termid":"GO:1902438"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to vanadate(3-)","termid":"GO:1902439"}


id: GO:0016848
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the breakage of a bond between carbon and any halogen atom.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lyase activity","termid":"GO:0016829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016829","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"carbon-halide lyase activity","secondary_identifiers":["EC:4.5.-.-"],"termid":"GO:0016848"}


id: MONDO:0700270
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hereditary cancer predisposition due to variation(s) in the ATM gene. Pathogenic germline variation in ATM confers an autosomal dominant predisposition to tumor formation at multiple primary sites, including breast cancer, ovarian cancer, pancreatic cancer, and prostate cancer.","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary neoplastic syndrome","termid":"MONDO:0015356"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATM-related cancer predisposition","termid":"MONDO:0700270","xrefs":{"Monarch":{"xref_id":"0700270"}}}


id: GO:0036495
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of translation initiation as a result of endoplasmic reticulum stress.","definition_xrefs":["GOC:PARL","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of translational initiation in response to stress","termid":"GO:0032057"},{"relation_name":"is_a","term_name":"regulation of translation initiation in response to endoplasmic reticulum stress","termid":"GO:0036491"},{"relation_name":"is_a","term_name":"negative regulation of translation in response to endoplasmic reticulum stress","termid":"GO:1902010"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"negative regulation of translation initiation in response to endoplasmic reticulum stress","synonyms":[{"name":"negative regulation of translation initiation in response to ER stress","type":"related"}],"termid":"GO:0036495"}


id: FYPO:0004557
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell growth phenotype in which vegetative cell population growth is increased relative to normal. Increased growth may reflect an increased growth rate (i.e. faster growth), growth that occurs to a greater extent than normal, or both.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased cell population growth","termid":"FYPO:0003937"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000139","FYPO:0002058","FYPO:0000003","FYPO:0001985","FYPO:0002057"],"is_obsolete":false,"name":"increased vegetative cell population growth","synonyms":[{"name":"fast aerobic vegetative cell population growth","type":"narrow"},{"name":"fast vegetative cell population growth","type":"narrow"},{"name":"increased aerobic vegetative cell population growth","type":"narrow"}],"termid":"FYPO:0004557"}


id: MONDO:0007652
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare premalignant hyperproliferative gastropathy characterized by massive overgrowth of foveolar cells in the gastric lining, resulting in large gastric folds, and manifesting with epigastric pain, nausea, vomiting, peripheral edema and, less commonly, anorexia and weight loss.","definition_xrefs":["Orphanet:2494"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"gastritis","termid":"MONDO:0004966"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"gastric mucosal hypertrophy","secondary_identifiers":["MedDRA:10017807","ICD9:535.20","ICD9:535.21","MEDGEN:4844","UMLS:C0017155","GARD:2436","DOID:8757","OMIM:137280","MedDRA:10017868","ICD9:535.2","EFO:1000946","MESH:D005758","icd11.foundation:1343994188","NCIT:C67277","SCTID:60002000"],"synonyms":[{"name":"MENETRIER disease","type":"exact"},{"name":"Menetrier Disease","type":"exact"},{"name":"Menetrier disease","type":"exact"},{"name":"Menetrier's disease","type":"exact"},{"name":"Ménétrier disease","type":"exact"},{"name":"familial giant hypertrophic gastritis","type":"exact"},{"name":"gastritis, familial giant hypertrophic","type":"related"},{"name":"gastroenteropathy, protein losing","type":"related"},{"name":"giant hypertrophic gastritis","type":"exact"},{"name":"giant hypertrophic gastropathy","type":"related"},{"name":"giant hypertrophy of the gastric mucosa","type":"related"},{"name":"giant rugal hypertrophy of stomach","type":"exact"},{"name":"hypertrophic gastritis","type":"exact"},{"name":"hypertrophic gastropathy","type":"exact"},{"name":"hypoproteinemic hypertrophic gastropathy","type":"exact"}],"termid":"MONDO:0007652","xrefs":{"Monarch":{"xref_id":"0007652"}}}


id: FYPO:0003117
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of reactive oxygen species (ROS) measured in a cell is higher than normal during a cellular response to plumbagin.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased cellular reactive oxygen species level during vegetative growth","termid":"FYPO:0003004"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"increased cellular reactive oxygen species level during cellular response to plumbagin","synonyms":[{"name":"increased ROS accumulation during cellular response to plumbagin","type":"related"},{"name":"increased cellular ROS accumulation during cellular response to plumbagin","type":"related"},{"name":"increased cellular ROS level during cellular response to plumbagin","type":"exact"},{"name":"increased cellular reactive oxygen species accumulation during cellular response to plumbagin","type":"related"},{"name":"increased cellular reactive oxygen species level during cellular response to plumbagin during mitotic cell cycle","type":"related"},{"name":"increased cellular reactive oxygen species level during cellular response to plumbagin during vegetative growth","type":"exact"}],"termid":"FYPO:0003117"}


id: GO:0060931
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a sinoatrial (SA) node cell over time, from its formation to the mature state. SA node cells are pacemaker cells that are found in the sinoatrial node.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiac pacemaker cell development","termid":"GO:0060926"},{"relation_name":"part_of","term_name":"sinoatrial node cell differentiation","termid":"GO:0060921"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sinoatrial node cell development","synonyms":[{"name":"SA node cell development","type":"exact"},{"name":"SAN cell development","type":"exact"},{"name":"sinus node cell development","type":"narrow"}],"termid":"GO:0060931"}


id: FYPO:0008081
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which the growth of a population of cells is decreased relative to normal in the vegetative growth phase of the life cycle when the population is co-cultured with wild-type cells. Decreased growth may reflect a reduced growth rate (i.e. slower growth), growth that occurs to a lesser extent than normal, or both.","definition_xrefs":["PMID:36302945"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased vegetative cell population growth","termid":"FYPO:0001355"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0002060","FYPO:0000139","FYPO:0002057","FYPO:0005447","FYPO:0002058","FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"decreased vegetative cell population growth when co-cultured with wild-type cells","synonyms":[{"name":"adaptive growth","type":"related"}],"termid":"FYPO:0008081"}


id: GO:1900862
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of cordyol C biosynthetic process.","definition_xrefs":["GOC:di","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of small molecule metabolic process","termid":"GO:0062014"},{"relation_name":"is_a","term_name":"negative regulation of secondary metabolite biosynthetic process","termid":"GO:1900377"},{"relation_name":"is_a","term_name":"regulation of cordyol C biosynthetic process","termid":"GO:1900861"},{"relation_name":"negatively_regulates","term_name":"cordyol C biosynthetic process","termid":"GO:1900799"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0019748"},{"rel_name":"regulates","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0019748","GO:0008150"],"is_obsolete":false,"name":"negative regulation of cordyol C biosynthetic process","synonyms":[{"name":"down regulation of cordyol C biosynthetic process","type":"exact"},{"name":"down-regulation of cordyol C biosynthetic process","type":"exact"},{"name":"downregulation of cordyol C biosynthetic process","type":"exact"}],"termid":"GO:1900862"}


id: PBO:0067114
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 156, pseudogene","termid":"PBO:0067114"}


id: PBO:0028241
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cell_cycle_arrest_at_mitotic_G1/S_phase_transition","termid":"PBO:0028241"}


id: PBO:0029071
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cellular_reactive_oxygen_species_level_during_vegetative_growth","termid":"PBO:0029071"}


id: PR:O74882
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A succinate dehydrogenase cytochrome b560 subunit, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR10978:SF0","OMA:SCHPO04199","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"succinate dehydrogenase cytochrome B subunit, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC330.12c","secondary_identifiers":["UniProtKB:O74882"],"synonyms":[{"name":"Spom972h-SDHC","type":"exact"}],"termid":"PR:O74882"}


id: PBO:0068238
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 18S pre-ribosomal N4","termid":"PBO:0068238"}


id: MONDO:0016074
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete fibrosarcoma (obsolete MONDO:0016074)","termid":"MONDO:0016074","xrefs":{"Monarch":{"xref_id":"0016074"}}}


id: GO:0030724
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the fusome of testicular cells, an organelle derived from the spectrosome.","definition_xrefs":["ISBN:0879694238","GOC:mah","GOC:jl","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fusome organization","termid":"GO:0045478"},{"relation_name":"part_of","term_name":"spermatogenesis","termid":"GO:0007283"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"testicular fusome organization","synonyms":[{"name":"testicular fusome organisation","type":"exact"},{"name":"testicular fusome organization and biogenesis","type":"related"}],"termid":"GO:0030724"}


id: FYPO:0007320
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which stress granule assembly occurs to a greater extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal stress granule assembly during vegetative growth","termid":"FYPO:0002347"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"increased stress granule assembly during vegetative growth","synonyms":[{"name":"increased cytoplasmic stress granule assembly during vegetative growth","type":"exact"},{"name":"increased stress granule assembly during mitotic cell cycle","type":"related"},{"name":"increased stress granule formation during vegetative growth","type":"exact"}],"termid":"FYPO:0007320"}


id: PBO:0059615
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ATP6 pseudogene 27","termid":"PBO:0059615"}


id: PBO:0078077
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TRAM2 antisense RNA 1 (head to head)","termid":"PBO:0078077"}


id: GO:0006466
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete protein disulfide-isomerase reaction (obsolete GO:0006466)","synonyms":[{"name":"protein disulfide-isomerase reaction","type":"exact"},{"name":"protein disulphide-isomerase reaction","type":"exact"}],"termid":"GO:0006466"}


id: FYPO:0008169
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which the size, shape, and structure of actin cables are normal during mitotic interphase (i.e. indistinguishable from wild type).","direct_ancestors":[{"relation_name":"is_a","term_name":"normal actin cable morphology","termid":"FYPO:0002487"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal actin cable morphology during mitotic interphase","termid":"FYPO:0008169"}


id: PBO:0042474
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cadherin 1","termid":"PBO:0042474"}


id: PBO:0087862
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcriptional activator of genes involved in glycolysis; interacts and functions with the DNA-binding protein Gcr1p","termid":"PBO:0087862"}


id: GO:0046014
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the rate or extent of resting T cell proliferation.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of T cell proliferation","termid":"GO:0042130"},{"relation_name":"is_a","term_name":"regulation of T cell homeostatic proliferation","termid":"GO:0046013"},{"relation_name":"negatively_regulates","term_name":"T cell homeostatic proliferation","termid":"GO:0001777"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0007155"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"negative regulation of T cell homeostatic proliferation","synonyms":[{"name":"down regulation of T cell homeostatic proliferation","type":"exact"},{"name":"down-regulation of T cell homeostatic proliferation","type":"exact"},{"name":"downregulation of T cell homeostatic proliferation","type":"exact"},{"name":"inhibition of T cell homeostatic proliferation","type":"narrow"},{"name":"negative regulation of T lymphocyte homeostatic proliferation","type":"exact"},{"name":"negative regulation of T-cell homeostatic proliferation","type":"exact"},{"name":"negative regulation of T-lymphocyte homeostatic proliferation","type":"exact"},{"name":"negative regulation of resting T cell proliferation","type":"exact"}],"termid":"GO:0046014"}


id: GO:0097489
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The volume enclosed by the membrane of the multivesicular body internal vesicle.","definition_xrefs":["GOC:pde","PMID:21183070"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle lumen","termid":"GO:0031983"},{"relation_name":"is_a","term_name":"intracellular organelle lumen","termid":"GO:0070013"},{"relation_name":"part_of","term_name":"multivesicular body, internal vesicle","termid":"GO:0097487"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005768"}],"interesting_parent_ids":["GO:0031410","GO:0005768","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"multivesicular body, internal vesicle lumen","termid":"GO:0097489"}


id: MONDO:0015138
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare genetic primary immunodeficiency (obsolete MONDO:0015138)","secondary_identifiers":["MedDRA:10064859"],"synonyms":[{"name":"primary immunodeficiency","type":"related"}],"termid":"MONDO:0015138","xrefs":{"Monarch":{"xref_id":"0015138"}}}


id: FYPO:0005170
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of uracil into the cell is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal transport during vegetative growth","termid":"FYPO:0005973"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000138","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"abnormal uracil import","synonyms":[{"name":"abnormal uracil import across plasma membrane","type":"exact"},{"name":"abnormal uracil import during mitotic cell cycle","type":"related"},{"name":"abnormal uracil import during vegetative growth","type":"exact"},{"name":"abnormal uracil import into cell","type":"exact"},{"name":"abnormal uracil uptake","type":"exact"}],"termid":"FYPO:0005170"}


id: PBO:0061228
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-POU domain containing octamer binding","termid":"PBO:0061228"}


id: MONDO:0060550
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"postaxial polydactyly type A","termid":"MONDO:0019673"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polydactyly, postaxial, type a7","secondary_identifiers":["UMLS:C4539976","MEDGEN:1627079","OMIM:617642"],"synonyms":[{"name":"PAPA7","type":"related"},{"name":"polydactyly, postaxial, type A7","type":"related"}],"termid":"MONDO:0060550","xrefs":{"Monarch":{"xref_id":"0060550"}}}


id: GO:0030577
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of Lands, a class of nuclear body that react against SP140 auto-antibodies.","definition_xrefs":["PMID:8695863","GOC:mah","PMID:10921892"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear body organization","termid":"GO:0030575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Lands organization","synonyms":[{"name":"LYSP100-associated nuclear domain organization","type":"exact"},{"name":"Lands organisation","type":"exact"},{"name":"Lands organization and biogenesis","type":"related"}],"termid":"GO:0030577"}


id: FYPO:0001964
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of aculeacin A than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002682"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000139","FYPO:0002682","FYPO:0000003","FYPO:0005447"],"is_obsolete":false,"name":"resistance to aculeacin A","synonyms":[{"name":"resistance to aculeacin A during mitotic cell cycle","type":"related"},{"name":"resistance to aculeacin A during vegetative growth","type":"exact"},{"name":"resistant to aculeacin A","type":"exact"}],"termid":"FYPO:0001964"}


id: PBO:0063727
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatase and actin regulator 2","termid":"PBO:0063727"}


id: PBO:0004108
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"origin recognition complex subunit Orc1","termid":"PBO:0004108"}


id: PBO:0066731
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 28","termid":"PBO:0066731"}


id: PBO:0040379
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase peripheral stalk subunit OSCP","termid":"PBO:0040379"}


id: PBO:0047787
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"forkhead box D4 like 4","termid":"PBO:0047787"}


id: GO:0043626
data:
  {"annotated_genes":["SJAG_04190"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[72935],"is_not":false,"summary":null,"term":"GO:0043626"}]},"cv_name":"cellular_component","definition":"A protein complex composed of three identical PCNA monomers, each comprising two similar domains, which are joined in a head-to-tail arrangement to form a homotrimer. Forms a ring-like structure in solution, with a central hole sufficiently large to accommodate the double helix of DNA. Originally characterized as a DNA sliding clamp for replicative DNA polymerases and as an essential component of the replisome, and has also been shown to be involved in other processes including Okazaki fragment processing, DNA repair, translesion DNA synthesis, DNA methylation, chromatin remodeling and cell cycle regulation.","definition_xrefs":["GOC:jl","PMID:12829735"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA polymerase processivity factor complex","termid":"GO:0044796"},{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04190":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0032991","GO:0005634","GO:0005575"],"is_obsolete":false,"name":"PCNA complex","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"PCNA homotrimer","type":"exact"},{"name":"proliferating cell nuclear antigen complex","type":"exact"},{"name":"sliding clamp","type":"broad"}],"termid":"GO:0043626","terms_by_termid":{"GO:0043626":null}}


id: GO:2000223
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of BMP signaling pathway involved in heart jogging.","definition_xrefs":["GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of BMP signaling pathway involved in heart jogging (obsolete GO:2000223)","synonyms":[{"name":"regulation of BMP signalling pathway involved in heart jogging pathway involved in somitogenesis","type":"exact"}],"termid":"GO:2000223"}


id: MONDO:0001893
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A melanoma (disease) that involves the spinal cord.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spinal cord cancer","termid":"MONDO:0003544"},{"relation_name":"is_a","term_name":"primary melanoma of the central nervous system","termid":"MONDO:0016747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"spinal cord melanoma","secondary_identifiers":["DOID:14151","NCIT:C5158","MEDGEN:236837","UMLS:C1336045"],"synonyms":[{"name":"melanoma (disease) of spinal cord","type":"exact"},{"name":"melanoma of spinal cord","type":"exact"},{"name":"melanoma of the spinal cord","type":"exact"},{"name":"spinal cord melanoma","type":"exact"},{"name":"spinal cord melanoma (disease)","type":"exact"}],"termid":"MONDO:0001893","xrefs":{"Monarch":{"xref_id":"0001893"}}}


id: MONDO:1011413
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Paroxysmal nocturnal hemoglobinuria that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disorder of glycosylation, non-human animal","termid":"MONDO:1011314"},{"relation_name":"is_a","term_name":"renal disease, non-human animal","termid":"MONDO:1011909"},{"relation_name":"is_a","term_name":"anemia, non-human animal","termid":"MONDO:1012981"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paroxysmal nocturnal hemoglobinuria, non-human animal","secondary_identifiers":["OMIA:002372"],"termid":"MONDO:1011413","xrefs":{"Monarch":{"xref_id":"1011413"}}}


id: PBO:0001344
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U3 snoRNP-associated protein Utp5 (predicted)","termid":"PBO:0001344"}


id: PBO:0066606
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ras homolog family member U","termid":"PBO:0066606"}


id: MONDO:0021130
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inherited metabolic disease that is has its basis in the disruption of sphingolipid biosynthetic process.","definition_xrefs":["MONDO:patterns/inborn_metabolic"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited lipid metabolism disorder","termid":"MONDO:0002525"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0002525","MONDO:0005066"],"is_obsolete":false,"name":"disorder of sphingolipid biosynthesis","synonyms":[{"name":"inborn error of sphingolipid biosynthetic process","type":"exact"},{"name":"inborn sphingolipid biosynthetic process disorder","type":"exact"},{"name":"rare inborn error of sphingolipid biosynthetic process","type":"exact"}],"termid":"MONDO:0021130","xrefs":{"Monarch":{"xref_id":"0021130"}}}


id: FYPO:0005798
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the cell cortex of one or both cell tips is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to cell cortex during vegetative growth","termid":"FYPO:0000929"},{"relation_name":"is_a","term_name":"decreased protein localization to cell tip during vegetative growth","termid":"FYPO:0001586"},{"relation_name":"is_a","term_name":"abnormal protein localization to cell cortex of cell tip during vegetative growth","termid":"FYPO:0006875"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"decreased protein localization to cell cortex of cell tip during vegetative growth","synonyms":[{"name":"decreased protein localisation to cell cortex of cell tip during vegetative growth","type":"exact"},{"name":"decreased protein localization to cell cortex of cell end during vegetative growth","type":"related"},{"name":"decreased protein localization to cell cortex of cell tip during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to cell tip cortex during vegetative growth","type":"exact"},{"name":"reduced protein localization to cell cortex of cell tip during vegetative growth","type":"exact"}],"termid":"FYPO:0005798"}


id: PATO:0000573
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A length quality which is relatively large.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"length","termid":"PATO:0000122"},{"relation_name":"is_a","term_name":"increased size","termid":"PATO:0000586"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased length","synonyms":[{"name":"long","type":"exact"}],"termid":"PATO:0000573"}


id: PBO:0079615
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme E2 K","termid":"PBO:0079615"}


id: MONDO:0007607
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Birt-Hogg-Dube syndrome (obsolete MONDO:0007607)","synonyms":[{"name":"Birt-Hogg-Dubé Syndrome","type":"exact"}],"termid":"MONDO:0007607","xrefs":{"Monarch":{"xref_id":"0007607"}}}


id: MOD:02074
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that contains an L-lysine residue coordinated to one or more metal atoms or metal clusters.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-lysine residue","termid":"MOD:00912"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metal or metal cluster coordinated L-lysine residue","termid":"MOD:02074"}


id: PBO:0026731
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_mitotic_spindle_pole_body_during_anaphase","termid":"PBO:0026731"}


id: MOD:01616
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cross-links two L-cysteine residues and adds three sulfur atoms to form trithiocystine.","definition_xrefs":["PubMed:19438211","RESID:AA0513"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysulfide crosslinked residues","termid":"MOD:01620"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"trithiocystine","synonyms":[{"name":"(2R,2'R)-3,3'-pentasulfane-1,5-diylbis(2-aminopropanoic acid)","type":"exact"},{"name":"3,3'-pentathiobisalanine","type":"exact"},{"name":"bis(2-amino-2-carboxyethyl)pentasulfide","type":"exact"},{"name":"trithiocystine","type":"exact"}],"termid":"MOD:01616"}


id: MONDO:0030881
data:
  {"annotated_genes":["SJAG_03256"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88798],"is_not":false,"summary":null,"term":"MONDO:0030881"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"developmental and epileptic encephalopathy","termid":"MONDO:0100062"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03256":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"},{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0005027","MONDO:0700092"],"is_obsolete":false,"name":"developmental and epileptic encephalopathy 102","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5676991","MEDGEN:1812769","DOID:0070388","OMIM:619881"],"synonyms":[{"name":"DEE102","type":"exact"},{"name":"developmental and epileptic encephalopathy 102","type":"exact"}],"termid":"MONDO:0030881","terms_by_termid":{"MONDO:0030881":null},"xrefs":{"Monarch":{"xref_id":"0030881"}}}


id: GO:0044066
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an organism effects a change that impairs the structure or function of the host cell nucleus.","definition_xrefs":["MITRE:tk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated disruption of host cellular anatomical structure","termid":"GO:0052008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated disruption of host cell nucleus","synonyms":[{"name":"disruption by symbiont of host cell nucleus","type":"exact"},{"name":"modification by symbiont of host cell nucleus","type":"related"},{"name":"modification by symbiont of host nucleus","type":"exact"},{"name":"modification of host cell nucleus by symbiont","type":"exact"},{"name":"modification of host nucleus by symbiont","type":"exact"}],"termid":"GO:0044066"}


id: PBO:0028744
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_level_during_cellular_response_to_methyl_methanesulfonate","termid":"PBO:0028744"}


id: MONDO:0060712
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete developmental delay, intellectual disability, obesity, and dysmorphic features (obsolete MONDO:0060712)","termid":"MONDO:0060712","xrefs":{"Monarch":{"xref_id":"0060712"}}}


id: FYPO:0005291
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to zinc ion is higher than normal. Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased RNA level during vegetative growth","termid":"FYPO:0000825"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0006551","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"increased RNA level during cellular response to zinc ion","synonyms":[{"name":"increased RNA accumulation during cellular response to zinc ion","type":"related"},{"name":"increased RNA level during cellular response to excess zinc ions","type":"narrow"},{"name":"increased RNA level during cellular response to zinc","type":"exact"},{"name":"increased RNA level during cellular response to zinc ion during mitotic cell cycle","type":"related"},{"name":"increased RNA level during cellular response to zinc ion during vegetative growth","type":"exact"},{"name":"increased mRNA level during cellular response to zinc ion","type":"narrow"},{"name":"increased transcript level during cellular response to zinc ion","type":"exact"}],"termid":"FYPO:0005291"}


id: PBO:0072672
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"receptor transporter protein 5 (putative)","termid":"PBO:0072672"}


id: MONDO:0019737
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The syndromes of microangiopathic hemolytic anemia, thrombocytopenia, and variable signs of organ impairment, due to platelet aggregation in the microcirculation.","definition_xrefs":["NCIT:C62605"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"kidney disorder","termid":"MONDO:0005240"},{"relation_name":"is_a","term_name":"blood coagulation disease","termid":"MONDO:0001531"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"thrombotic microangiopathy","secondary_identifiers":["SCTID:126729006","Orphanet:93573","UMLS:C2717961","ICD10CM:M31.1","MEDGEN:403479","ICD9:446.6","MedDRA:10043645","MESH:D057049","GARD:19227"],"termid":"MONDO:0019737","xrefs":{"Monarch":{"xref_id":"0019737"}}}


id: PBO:0030769
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_histone_H3-K14_acetylation_at_centromere_outer_repeat","termid":"PBO:0030769"}


id: PBO:0069257
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 512, pseudogene","termid":"PBO:0069257"}


id: GO:0007186
data:
  {"annotated_genes":["SJAG_02426","SJAG_00266","SJAG_01754","SJAG_02027","SJAG_04312","SJAG_00574","SJAG_01245","SJAG_02311","SJAG_04026","SJAG_01345","SJAG_00472","SJAG_01699","SJAG_03081","SJAG_02444","SJAG_01254","SJAG_02233","SJAG_02481","SJAG_01978"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[58156,62854,64538,74111],"is_not":false,"summary":null,"term":"GO:0007186"},{"annotations":[108774,107827,108424,111470,117515,110959,103744,96072,118548],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0010619"},{"annotations":[109906,118364,102327,94592,93926],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0110034"}]},"cv_name":"biological_process","definition":"The series of molecular signals initiated by a ligand binding to its receptor, in which the activated receptor promotes the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, and ends with regulation of a downstream cellular process. The pathway can start from the plasma membrane, Golgi or nuclear membrane.","definition_xrefs":["GOC:bf","PMID:16902576","GOC:mah","PMID:24568158","Wikipedia:G_protein-coupled_receptor"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signal transduction","termid":"GO:0007165"}],"gene_count":18,"genes_by_uniquename":{"SJAG_00266":null,"SJAG_00472":null,"SJAG_00574":null,"SJAG_01245":null,"SJAG_01254":null,"SJAG_01345":null,"SJAG_01699":null,"SJAG_01754":null,"SJAG_01978":null,"SJAG_02027":null,"SJAG_02233":null,"SJAG_02311":null,"SJAG_02426":null,"SJAG_02444":null,"SJAG_02481":null,"SJAG_03081":null,"SJAG_04026":null,"SJAG_04312":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"G protein-coupled receptor signaling pathway","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-388396","GO:0038042","Reactome:R-HSA-373076"],"synonyms":[{"name":"G protein coupled receptor protein signaling pathway","type":"exact"},{"name":"G protein coupled receptor protein signalling pathway","type":"exact"},{"name":"G-protein coupled receptor protein signal transduction","type":"exact"},{"name":"G-protein coupled receptor protein signaling pathway","type":"exact"},{"name":"G-protein coupled receptor signaling pathway via GPCR dimer","type":"narrow"},{"name":"G-protein coupled receptor signalling pathway","type":"exact"},{"name":"G-protein-coupled receptor protein signalling pathway","type":"exact"},{"name":"GPCR signaling pathway","type":"exact"},{"name":"GPCR signalling pathway","type":"exact"},{"name":"dimeric G-protein coupled receptor signaling pathway","type":"narrow"},{"name":"dimeric G-protein coupled receptor signalling pathway","type":"narrow"}],"termid":"GO:0007186","terms_by_termid":{"GO:0007186":null,"GO:0010619":null,"GO:0110034":null}}


id: MONDO:0007476
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Familial Dupuyren contracture is a rare, genetic, epidermal disease characterized by a, usually unilateral, progressive thickening and shortening of the palmar fascia, leading to permanent flexion contracture of the digits in several members of a family. It most commonly affects the fourth digit, followed by the fifth and then the third (first and second digits are usually spared).","definition_xrefs":["Orphanet:79142"],"direct_ancestors":[{"relation_name":"is_a","term_name":"skin neoplasm","termid":"MONDO:0002531"},{"relation_name":"is_a","term_name":"superficial Fibromatosis","termid":"MONDO:0016037"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"familial Dupuytren contracture","secondary_identifiers":["SCTID:274142002","OMIM:126900","MEDGEN:41672","UMLS:C0013312"],"synonyms":[{"name":"Dupuytren contracture","type":"related"},{"name":"Dupuytren contracture 1","type":"related"},{"name":"plantar fibromas","type":"related"},{"name":"plantar fibromatosis, familial","type":"related"}],"termid":"MONDO:0007476","xrefs":{"Monarch":{"xref_id":"0007476"}}}


id: MONDO:0001050
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An otitis externa which involves infection of the external ear that has spread to involve the skull bone containing part of the ear canal, the middle ear, and the inner ear. It is caused by the bacteria Pseudomonas. This is common in people with weakened immune systems and in older people with diabetes.","definition_xrefs":["DOID:10516"],"direct_ancestors":[{"relation_name":"is_a","term_name":"otitis externa","termid":"MONDO:0004795"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"malignant otitis externa","secondary_identifiers":["MEDGEN:509950","ICD9:380.14","icd11.foundation:984580942","SCTID:94146005","UMLS:C0155395","ICD10CM:H60.2"],"termid":"MONDO:0001050","xrefs":{"Monarch":{"xref_id":"0001050"}}}


id: PBO:0057077
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIR155 host gene","termid":"PBO:0057077"}


id: MOD:01118
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:275"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DeltaMass","termid":"MOD:00947"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-N-6-phosphogluconoylation (His Tagged proteins)","termid":"MOD:01118"}


id: PBO:0085710
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in splicing Group I aI5-beta intron from COX1 mRNA; mitochondrial matrix protein","termid":"PBO:0085710"}


id: MONDO:0024597
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete CD3epsilon deficiency (obsolete MONDO:0024597)","termid":"MONDO:0024597","xrefs":{"Monarch":{"xref_id":"0024597"}}}


id: PBO:0108621
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IGBP1 pseudogene 4","termid":"PBO:0108621"}


id: PBO:0052668
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 8 pseudogene 36","termid":"PBO:0052668"}


id: PBO:0062228
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily B member 1 pseudogene","termid":"PBO:0062228"}


id: PBO:0087740
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the Ssh1 translocon complex; Sec61p homolog involved in co-translational pathway of protein translocation; not essential","termid":"PBO:0087740"}


id: PBO:0065661
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein tyrosine phosphatase receptor type K","termid":"PBO:0065661"}


id: GO:0015863
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of xanthosine, xanthine riboside, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside transport","termid":"GO:0015858"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"xanthosine transport","termid":"GO:0015863"}


id: PBO:0034333
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_developmental_contribution_from","termid":"PBO:0034333"}


id: PBO:0004775
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SREBP Cleavage activating Protein","termid":"PBO:0004775"}


id: MONDO:0018965
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare renal disease characterized by glomerular nephropathy with hematuria progressing to end-stage renal disease (ESRD), frequently associated with sensorineural deafness, and occasionally with ocular anomalies.","definition_xrefs":["Orphanet:63"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete lens shape anomaly (obsolete MONDO:0020237)","termid":"MONDO:0020237"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary nephritis","termid":"MONDO:0005334"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"Alport syndrome","secondary_identifiers":["icd11.foundation:1170919425","DOID:10983","MEDGEN:339209","MESH:D009394","UMLS:C1567741","NCIT:C34842","ICD10CM:Q87.81","MedDRA:10001843","GARD:5785","NANDO:1200712","NANDO:2200126","OMIMPS:301050","NORD:756"],"synonyms":[{"name":"Alport deafness-nephropathy","type":"exact"},{"name":"Alport syndrome","type":"exact"},{"name":"Alport's syndrome","type":"exact"},{"name":"hereditary nephritis","type":"broad"}],"termid":"MONDO:0018965","xrefs":{"Monarch":{"xref_id":"0018965"}}}


id: MONDO:0016963
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete partial duplication of the long arm of chromosome 13 (obsolete MONDO:0016963)","termid":"MONDO:0016963","xrefs":{"Monarch":{"xref_id":"0016963"}}}


id: GO:0019703
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The covalent linkage of coenzyme A and peptidyl-cysteine to form L-cysteine coenzyme A disulfide.","definition_xrefs":["RESID:AA0306"],"gene_count":0,"genotype_count":0,"name":"obsolete coenzyme A-peptidyl-cysteine covalent linking (obsolete GO:0019703)","termid":"GO:0019703"}


id: PBO:0054116
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1482","termid":"PBO:0054116"}


id: GO:0150034
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"That part of an axon close to and including the growth cone or the axon terminus.","definition_xrefs":["GOC:bc","PMID:17202468","GOC:aruk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"axon","termid":"GO:0030424"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"distal axon","synonyms":[{"name":"distal part of axon","type":"exact"},{"name":"distal part of the axon","type":"exact"}],"termid":"GO:0150034"}


id: PBO:0066768
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 66","termid":"PBO:0066768"}


id: MONDO:0006868
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Loss or absence of normal intestinal function due to nerve damage or birth defects. It is characterized by the inability to control the elimination of stool from the body.","definition_xrefs":["MESH:D055496"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intestinal disorder","termid":"MONDO:0005020"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"neurogenic bowel","secondary_identifiers":["DOID:13419","SCTID:425671009","MEDGEN:151969","UMLS:C0695242","MedDRA:10048657","ICD9:564.81"],"termid":"MONDO:0006868","xrefs":{"Monarch":{"xref_id":"0006868"}}}


id: PBO:0040998
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bolA family member 3 pseudogene 3","termid":"PBO:0040998"}


id: FYPO:0001763
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which tRNA methylation, the posttranscriptional addition of methyl groups to specific residues in a tRNA molecule, is normal (i.e. indistinguishable from wild type).","definition_xrefs":["GO:0030488","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal tRNA modification","termid":"FYPO:0001762"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001312","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"normal tRNA methylation","synonyms":[{"name":"normal tRNA methylation during mitotic cell cycle","type":"related"},{"name":"normal tRNA methylation during vegetative growth","type":"exact"}],"termid":"FYPO:0001763"}


id: GO:0021597
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that contributes to the act of creating the structural organization of the central nervous system structure. The central nervous system is the core nervous system that serves an integrating and coordinating function. In vertebrates it consists of the brain, spinal cord and spinal nerves. In those invertebrates with a central nervous system it typically consists of a brain, cerebral ganglia and a nerve cord.","definition_xrefs":["GO_REF:0000021","GOC:cls","GOC:dgh","GOC:jid","GOC:dph","ISBN:0582227089"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure arrangement","termid":"GO:0048532"},{"relation_name":"part_of","term_name":"central nervous system morphogenesis","termid":"GO:0021551"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"central nervous system structural organization","synonyms":[{"name":"central nervous system structural organisation","type":"exact"}],"termid":"GO:0021597"}


id: GO:0048851
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the hypophysis are generated and organized. The hypophysis is an endocrine gland that secretes hormones that regulate many other glands.","definition_xrefs":["GOC:jid","GOC:dgh","GOC:cls","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"hypophysis morphogenesis","termid":"GO:0048850"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hypophysis formation","synonyms":[{"name":"hypophysis biosynthesis","type":"exact"},{"name":"pituitary gland biosynthesis","type":"exact"},{"name":"pituitary gland formation","type":"exact"}],"termid":"GO:0048851"}


id: GO:0034005
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = (+)-(R)-germacrene A + diphosphate.","definition_xrefs":["EC:4.2.3.23","RHEA:12516"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sesquiterpene synthase activity","termid":"GO:0010334"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"germacrene-A synthase activity","secondary_identifiers":["KEGG_REACTION:R07649","MetaCyc:RXN-11527"],"synonyms":[{"name":"(+)-(10R)-germacrene A synthase activity","type":"related"},{"name":"(+)-germacrene A synthase activity","type":"related"},{"name":"2-trans,6-trans-farnesyl-diphosphate diphosphate-lyase (germacrene-A-forming) activity","type":"related"},{"name":"2-trans,6-trans-farnesyl-diphosphate diphosphate-lyase [(+)-germacrene-A-forming] activity","type":"related"},{"name":"GAS","type":"related"},{"name":"germacrene A synthase activity","type":"related"}],"termid":"GO:0034005"}


id: MONDO:0011521
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inflammatory bowel disease that has material basis in variation in the chromosome region 1p36.","definition_xrefs":["PMID:19122664","DOID:0110882"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inflammatory bowel disease","termid":"MONDO:0005265"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0004335"],"is_obsolete":false,"name":"inflammatory bowel disease 7","secondary_identifiers":["MESH:C565353","MEDGEN:381452","OMIM:605225","UMLS:C1854573"],"synonyms":[{"name":"IBD7","type":"exact"},{"name":"inflammatory bowel disease 7","type":"exact"},{"name":"inflammatory bowel disease type 7","type":"exact"}],"termid":"MONDO:0011521","xrefs":{"Monarch":{"xref_id":"0011521"}}}


id: PBO:0002449
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA 2'-phosphotransferase Tpt1 (predicted)","termid":"PBO:0002449"}


id: PBO:0012849
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Fanconi-associated nuclease Fan1","termid":"PBO:0012849"}


id: PR:Q09741
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A spermidine synthase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR11558:SF11","PRO:DNx","OMA:SCHPO03285"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spermidine synthase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC12C2.07c","secondary_identifiers":["UniProtKB:Q09741"],"synonyms":[{"name":"SPDSY (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-SRM","type":"exact"},{"name":"putrescine aminopropyltransferase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q09741"}


id: PBO:0085065
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Non-essential subunit of the NuA4 acetyltransferase complex; Esa1p-associated factor; relocalizes to the cytosol in response to hypoxia","termid":"PBO:0085065"}


id: PBO:0056271
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mannosidase alpha class 1A member 2","termid":"PBO:0056271"}


id: PBO:0091503
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IRC1-L/borderline left, centromere proximal ncRNA","termid":"PBO:0091503"}


id: PBO:0040898
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BMS1 pseudogene 1","termid":"PBO:0040898"}


id: PBO:0076288
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synapsin I","termid":"PBO:0076288"}


id: PBO:0084292
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Integral vacuolar membrane protein; involved in vacuole inheritance and morphology; activates Fab1p kinase activity under basal conditions and also after hyperosmotic shock","termid":"PBO:0084292"}


id: MONDO:0007526
data:
  {"annotated_genes":["SJAG_00222","SJAG_00183"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88877],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012873"},{"annotations":[87845],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014139"}]},"cv_name":"mondo","definition":"A form of Ehlers-Danlos syndrome characterized by a premature aging with sparse hair, macrocephaly, loose elastic skin, failure to thrive, joint laxity, psychomotor retardation, hypotonia, and defective wound healing with atrophic scars.","definition_xrefs":["Orphanet:75496"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"skin disorder","termid":"MONDO:0005093"},{"relation_name":"excluded_subClassOf","term_name":"obsolete primary bone dysplasia with decreased bone density (obsolete MONDO:0019704)","termid":"MONDO:0019704"},{"relation_name":"is_a","term_name":"developmental anomaly of metabolic origin","termid":"MONDO:0015327"},{"relation_name":"is_a","term_name":"inborn errors of metabolism","termid":"MONDO:0019052"},{"relation_name":"is_a","term_name":"Ehlers-Danlos syndrome","termid":"MONDO:0020066"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00183":null,"SJAG_00222":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"Ehlers-Danlos syndrome, spondylodysplastic type","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:C536201","GARD:9991","DOID:0050802","SCTID:720861000"],"synonyms":[{"name":"B4GALT7-CDG","type":"exact"},{"name":"EDS, progeroid type","type":"exact"},{"name":"EDSSPD1","type":"narrow"},{"name":"Ehlers-Danlos syndrome progeroid type","type":"exact"},{"name":"Ehlers-Danlos syndrome with short stature and limb anomalies","type":"narrow"},{"name":"Ehlers-Danlos syndrome, progeroid type","type":"related"},{"name":"Ehlers-Danlos syndrome, progeroid type (former)","type":"related"},{"name":"Ehlers-Danlos syndrome, spondylodysplastic type, 1","type":"narrow"},{"name":"PDS","type":"exact"},{"name":"Pds, defective biosynthesis of","type":"narrow"},{"name":"XGPT deficiency","type":"narrow"},{"name":"defective biosynthesis of proteodermatan sulfate","type":"exact"},{"name":"defective biosynthesis of proteodermatan sulphate","type":"exact"},{"name":"dermatan sulfate proteoglycan","type":"narrow"},{"name":"dermatan sulphate proteoglycan","type":"narrow"},{"name":"galactosyltransferase 1 deficiency","type":"narrow"},{"name":"galactosyltransferase I deficiency","type":"exact"},{"name":"proteodermatan sulfate, defective biosynthesis of","type":"narrow"},{"name":"spondylodysplastic Ehlers-Danlos syndrome","type":"related"},{"name":"xylosylprotein 4-beta-galactosyltransferase deficiency","type":"narrow"}],"termid":"MONDO:0007526","terms_by_termid":{"MONDO:0012873":null,"MONDO:0014139":null},"xrefs":{"Monarch":{"xref_id":"0007526"}}}


id: PBO:0066649
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ras and Rab interactor 3","termid":"PBO:0066649"}


id: PBO:0109602
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 90 member A3","termid":"PBO:0109602"}


id: GO:0003052
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which an organism modulates its blood pressure at different values with a regularity of approximately 24 hours.","definition_xrefs":["GOC:rl","GOC:mtg_cardio"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of systemic arterial blood pressure","termid":"GO:0003073"},{"relation_name":"is_a","term_name":"circadian rhythm","termid":"GO:0007623"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"circadian regulation of systemic arterial blood pressure","termid":"GO:0003052"}


id: PBO:0040404
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATPase H+ transporting V1 subunit G1 pseudogene 5","termid":"PBO:0040404"}


id: MONDO:0014300
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Proximal myopathy with extrapyramidal signs is a rare, hereditary non-dystrophic myopathy characterized by proximal muscle weakness, delayed motor development, learning difficulties, and progressive extrapyramidal motor signs including chorea, dystonia and tremor. Variable additional features have been reported - ataxia, microcephaly, ophthalmoplegia, ptosis, and optic atrophy.","definition_xrefs":["Orphanet:401768"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myopathy","termid":"MONDO:0005336"},{"relation_name":"is_a","term_name":"movement disorder","termid":"MONDO:0005395"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"},{"relation_name":"is_a","term_name":"hereditary skeletal muscle disorder","termid":"MONDO:0700223"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005336"],"is_obsolete":false,"name":"proximal myopathy with extrapyramidal signs","secondary_identifiers":["GARD:12978","DOID:0111335","MEDGEN:816615","OMIM:615673","UMLS:C3810285"],"synonyms":[{"name":"MPXPS","type":"related"},{"name":"myopathy with extrapyramidal signs","type":"related"}],"termid":"MONDO:0014300","xrefs":{"Monarch":{"xref_id":"0014300"}}}


id: SO:0001055
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A regulatory_region that modulates the transcription of a gene or genes.","definition_xrefs":["SO:regcreative","PMID:9679020"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulatory_region","termid":"SO:0005836"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptional_cis_regulatory_region","synonyms":[{"name":"INSDC_feature:regulatory","type":"broad"},{"name":"INSDC_qualifier:transcriptional_cis_regulatory_region","type":"exact"},{"name":"transcription-control region","type":"exact"},{"name":"transcriptional cis regulatory region","type":"exact"}],"termid":"SO:0001055"}


id: MONDO:0975800
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant cerebellar ataxia","termid":"MONDO:0020380"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0002039"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0005559","MONDO:0002039"],"is_obsolete":false,"name":"spinocerebellar ataxia 51","secondary_identifiers":["OMIM:620947"],"termid":"MONDO:0975800","xrefs":{"Monarch":{"xref_id":"0975800"}}}


id: MONDO:0018727
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete immunodeficiency due to a complement regulatory deficiency (obsolete MONDO:0018727)","secondary_identifiers":["Orphanet:459348"],"termid":"MONDO:0018727","xrefs":{"Monarch":{"xref_id":"0018727"}}}


id: FYPO:0001560
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-threonine measured in a cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased cellular amino acid level","termid":"FYPO:0003985"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"decreased cellular threonine level","secondary_identifiers":["FYPO:0001614"],"synonyms":[{"name":"decreased cellular L-threonine level","type":"exact"},{"name":"decreased cellular threonine level during mitotic cell cycle","type":"related"},{"name":"decreased cellular threonine level during vegetative growth","type":"exact"},{"name":"decreased level of threonine in cell","type":"exact"},{"name":"decreased threonine accumulation","type":"related"},{"name":"reduced cellular threonine level","type":"exact"},{"name":"reduced level of threonine in cell","type":"exact"}],"termid":"FYPO:0001560"}


id: PBO:0041973
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 14","termid":"PBO:0041973"}


id: PBO:0013099
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"snRNP core protein Smg1","termid":"PBO:0013099"}


id: FYPO:0004121
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A transport phenotype observed in the vegetative growth phase of the life cycle in which the import of protein into the nucleus is normal (i.e. indistinguishable from wild type). Import of all proteins or a specific protein may be assayed.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal nuclear import","termid":"FYPO:0000516"},{"relation_name":"is_a","term_name":"normal protein localization to nucleus during vegetative growth","termid":"FYPO:0000838"},{"relation_name":"is_a","term_name":"normal intracellular protein transport during vegetative growth","termid":"FYPO:0005397"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000138","FYPO:0000002","FYPO:0001312","FYPO:0001320"],"is_obsolete":false,"name":"normal protein import into nucleus during vegetative growth","synonyms":[{"name":"normal nucleocytoplasmic protein import during vegetative growth","type":"related"},{"name":"normal protein import into nucleus during mitotic cell cycle","type":"related"}],"termid":"FYPO:0004121"}


id: PBO:0079767
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin fold modifier 1","termid":"PBO:0079767"}


id: FYPO:0002425
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which actin cable organization is abnormal during mitosis. The process normally results in the assembly, arrangement of constituent parts, or disassembly of an actin cable. Actin cables are parallel actin filament bundles nucleated by formin, and are the most common form of actin filament bundles found in yeasts.","definition_xrefs":["GO:0070648","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal actin cable organization","termid":"FYPO:0002030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0004803"],"is_obsolete":false,"name":"abnormal actin cable organization during mitosis","synonyms":[{"name":"abnormal actin cable organisation during mitotic interphase","type":"exact"},{"name":"abnormal actin cable organization during mitotic M phase","type":"related"},{"name":"abnormal actin cable organization during mitotic interphase during vegetative growth","type":"exact"},{"name":"abnormal actin cable organization during mitotic nuclear division","type":"exact"},{"name":"abnormal formin-nucleated actin cable organization during mitotic interphase","type":"exact"}],"termid":"FYPO:0002425"}


id: PBO:0004369
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"previously annotated as csn6 in error","termid":"PBO:0004369"}


id: PBO:0053169
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LEF1 antisense RNA 1","termid":"PBO:0053169"}


id: MONDO:0043129
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"merlob grunebaum reisner syndrome","secondary_identifiers":["UMLS:C2931499","MEDGEN:419427","MESH:C537461"],"synonyms":[{"name":"familial opposable triphalangeal thumbs associated with duplication of the big toes","type":"related"}],"termid":"MONDO:0043129","xrefs":{"Monarch":{"xref_id":"0043129"}}}


id: MONDO:0800393
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inherited retinopathy caused by bi-allelic variants in the IDH3B gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited retinal dystrophy","termid":"MONDO:0019118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"IDH3B-related retinopathy","termid":"MONDO:0800393","xrefs":{"Monarch":{"xref_id":"0800393"}}}


id: PBO:0005433
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"previously annotated as Med9","termid":"PBO:0005433"}


id: PBO:0030386
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cell_cortex_morphology","termid":"PBO:0030386"}


id: PBO:0011509
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eisosome BAR domain protein Pil1","termid":"PBO:0011509"}


id: MONDO:0010226
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"46,XY complete gonadal dysgenesis","termid":"MONDO:0010765"},{"relation_name":"is_a","term_name":"46,XY partial gonadal dysgenesis","termid":"MONDO:0016674"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"46,XY sex reversal 2","secondary_identifiers":["GARD:9159","OMIM:300018","UMLS:C1848296","DOID:0111777","NANDO:1200404","MESH:C535601","MEDGEN:341190"],"synonyms":[{"name":"46,XY SEX reversal 2","type":"related"},{"name":"46,XY Sex reversal type 2","type":"exact"},{"name":"46,XY Sex reversal, Dax1-related","type":"related"},{"name":"46,XY sex reversal 2","type":"exact"},{"name":"46XY sex reversal 2, dosage-sensitive","type":"exact"},{"name":"SRXY2","type":"related"},{"name":"dosage-sensitive Sex reversal","type":"related"}],"termid":"MONDO:0010226","xrefs":{"Monarch":{"xref_id":"0010226"}}}


id: PBO:0012045
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"helicase activity of Mcm4/6/7 complex requires 5' overhang","termid":"PBO:0012045"}


id: FYPO:0000705
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the binding of one protein to another does not occur. The relevant proteins may include the one encoded by the mutated gene, or may both be encoded by different genes.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein-protein interaction","termid":"FYPO:0000704"},{"relation_name":"is_a","term_name":"abolished molecular function","termid":"FYPO:0005446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000702"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000707","FYPO:0000702","FYPO:0001985"],"is_obsolete":false,"name":"abolished protein-protein interaction","synonyms":[{"name":"abolished protein binding","type":"exact"},{"name":"protein binding abolished","type":"exact"}],"termid":"FYPO:0000705"}


id: PBO:0072994
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SCML2 pseudogene 1","termid":"PBO:0072994"}


id: PBO:0025548
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fumarase deficiency","termid":"PBO:0025548"}


id: SO:0002239
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A gene which codes for 28S_rRNA, which functions as a component of the large subunit of the ribosome in eukaryotes.","direct_ancestors":[{"relation_name":"is_a","term_name":"cytosolic_LSU_rRNA_gene","termid":"SO:0002361"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytosolic_rRNA_28S_gene","synonyms":[{"name":"28S rRNA gene","type":"exact"},{"name":"28S_rRNA_gene","type":"exact"}],"termid":"SO:0002239"}


id: GO:0033240
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving amines.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of metabolic process","termid":"GO:0009893"},{"relation_name":"is_a","term_name":"regulation of amine metabolic process","termid":"GO:0033238"},{"relation_name":"positively_regulates","term_name":"amine metabolic process","termid":"GO:0009308"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of amine metabolic process","synonyms":[{"name":"positive regulation of amine metabolism","type":"exact"},{"name":"positive regulation of cellular amine metabolic process","type":"exact"}],"termid":"GO:0033240"}


id: PBO:0081024
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger CCCH-type containing 6","termid":"PBO:0081024"}


id: FYPO:0006715
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A mitosis phenotype observed in the vegetative growth phase of the life cycle in which the nucleus divides unequally to produce one daughter nucleus that is larger than the other.","definition_xrefs":["PomBase:vw","PomBase:jh","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nuclear morphology during vegetative growth","termid":"FYPO:0000062"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002403"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0002403","FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"large and small daughter nuclei","synonyms":[{"name":"large and small daughter nuclei during mitotic cell cycle","type":"related"},{"name":"large and small daughter nuclei during vegetative growth","type":"exact"}],"termid":"FYPO:0006715"}


id: PBO:0036154
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_replication_fork_pausing_at_tRNA_genes","termid":"PBO:0036154"}


id: GO:0035224
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The establishment, maintenance and elaboration of the anterior/posterior axis of the genital disc. An anterior and posterior compartment form in each of the three genital disc primoridia (the female genital disc primordium, the male genital disc primordium and the anal primordium).","definition_xrefs":["PMID:11494318"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anterior/posterior pattern specification, imaginal disc","termid":"GO:0007448"},{"relation_name":"is_a","term_name":"genital disc pattern formation","termid":"GO:0035221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"genital disc anterior/posterior pattern formation","termid":"GO:0035224"}


id: MONDO:0005461
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An adenocarcinoma arising from the uterine body cavity. This is the most frequent malignant tumor affecting the uterine body, and is linked to estrogen therapy. Most patients present with uterine bleeding and are over age 40 at the time of diagnosis. The prognosis depends on the stage of the tumor, the depth of the uterine wall invasion, and the histologic subtype. Endometrioid adenocarcinoma is the most frequently seen morphologic variant of endometrial adenocarcinoma.","definition_xrefs":["NCIT:C7359"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endometrial carcinoma","termid":"MONDO:0002447"},{"relation_name":"is_a","term_name":"adenocarcinoma","termid":"MONDO:0004970"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"endometrium adenocarcinoma","secondary_identifiers":["MEDGEN:218862","DOID:2870","NCIT:C6287","UMLS:C1153706","EFO:0005232"],"synonyms":[{"name":"adenocarcinoma of endometrium","type":"exact"},{"name":"adenocarcinoma of the endometrium","type":"exact"},{"name":"adenocarcinoma of uterus","type":"exact"},{"name":"adenocarcinoma, endometrial, malignant","type":"exact"},{"name":"endometrial adenoacanthoma","type":"exact"},{"name":"endometrial adenocarcinoma","type":"exact"},{"name":"endometrial endometrioid adenocarcinoma","type":"related"},{"name":"endometrial endometrioid adenocarcinoma with squamous differentiation","type":"exact"},{"name":"endometrioid adenoma or carcinoma","type":"exact"},{"name":"endometrioid adenoma or carcinoma NOS (morphologic abnormality)","type":"exact"},{"name":"endometrioid adenomas and carcinomas","type":"exact"},{"name":"endometrioid adenomas and carcinomas (morphologic abnormality)","type":"exact"},{"name":"endometrioid carcinoma of endometrium","type":"broad"},{"name":"endometrium adenocarcinoma","type":"exact"}],"termid":"MONDO:0005461","xrefs":{"Monarch":{"xref_id":"0005461"}}}


id: PBO:0063359
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Purkinje cell protein 4 like 1","termid":"PBO:0063359"}


id: GO:0101006
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: protein histidine phosphate + H2O = protein histidine + phosphate.","definition_xrefs":["EC:3.9.1.3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphoprotein phosphatase activity","termid":"GO:0004721"},{"relation_name":"is_a","term_name":"hydrolase activity, acting on acid phosphorus-nitrogen bonds","termid":"GO:0016825"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0004721"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016788","GO:0140096","GO:0003674","GO:0016787","GO:0004721"],"is_obsolete":false,"name":"protein histidine phosphatase activity","secondary_identifiers":["GO:0008969"],"synonyms":[{"name":"phosphohistidine phosphatase activity","type":"broad"}],"termid":"GO:0101006"}


id: PBO:0018115
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unconventional prefoldin chaperone involved protein complex assembly Uri1 (predicted)","termid":"PBO:0018115"}


id: MONDO:0014149
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Fetal akinesia-cerebral and retinal hemorrhage syndrome is a rare, lethal, congenital myopathy syndrome characterized by decreased fetal movements and polyhydraminos in utero and the presence of akinesia, severe hypotonia with respiratory insufficiency, absent reflexes, joint contractures, skeletal abnormalities with thin ribs and bones, intracranial and retinal hemorrhages and decreased birth weight in the neonate.","definition_xrefs":["Orphanet:363409"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lethal congenital contracture syndrome","termid":"MONDO:0017436"},{"relation_name":"is_a","term_name":"congenital myopathy","termid":"MONDO:0019952"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005336"],"is_obsolete":false,"name":"fetal akinesia-cerebral and retinal hemorrhage syndrome","secondary_identifiers":["MEDGEN:1631944","SCTID:763346009","UMLS:C4706410","OMIM:615368","GARD:17553"],"synonyms":[{"name":"LCCS5","type":"related"},{"name":"lethal congenital contracture syndrome 5","type":"related"},{"name":"lethal congenital contracture syndrome type 5","type":"exact"},{"name":"myopathy, centronuclear, lethal, autosomal recessive","type":"related"}],"termid":"MONDO:0014149","xrefs":{"Monarch":{"xref_id":"0014149"}}}


id: MONDO:0012245
data:
  {"annotated_genes":["SJAG_00760"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87020],"is_not":false,"summary":null,"term":"MONDO:0012245"}]},"cv_name":"mondo","definition":"Any early infantile epileptic encephalopathy in which the cause of the disease is a mutation in the SLC25A22 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"early myoclonic encephalopathy","termid":"MONDO:0016022"},{"relation_name":"is_a","term_name":"developmental and epileptic encephalopathy","termid":"MONDO:0100062"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00760":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"},{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027","MONDO:0700092"],"is_obsolete":false,"name":"developmental and epileptic encephalopathy, 3","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:15456","MEDGEN:1801135","UMLS:C5574665","OMIM:609304","DOID:0080440"],"synonyms":[{"name":"DEE3","type":"exact"},{"name":"EIEE3","type":"exact"},{"name":"SLC25A22 early infantile epileptic encephalopathy","type":"exact"},{"name":"developmental and epileptic encephalopathy 3","type":"exact"},{"name":"early infantile epileptic encephalopathy caused by mutation in SLC25A22","type":"exact"},{"name":"epileptic encephalopathy, early infantile, 3","type":"exact"},{"name":"epileptic encephalopathy, early infantile, type 3","type":"exact"}],"termid":"MONDO:0012245","terms_by_termid":{"MONDO:0012245":null},"xrefs":{"Monarch":{"xref_id":"0012245"}}}


id: PBO:0062825
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OSGEPL1 antisense RNA 1","termid":"PBO:0062825"}


id: GO:0051238
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process of binding or confining metal ions such that they are separated from other components of a biological system.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete sequestering of metal ion (obsolete GO:0051238)","synonyms":[{"name":"metal ion retention","type":"exact"},{"name":"metal ion sequestering","type":"exact"},{"name":"metal ion sequestration","type":"exact"},{"name":"metal ion storage","type":"exact"},{"name":"retention of metal ion","type":"exact"},{"name":"sequestration of metal ion","type":"exact"},{"name":"storage of metal ion","type":"exact"}],"termid":"GO:0051238"}


id: GO:0000746
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The union or introduction of genetic information from compatible mating types that results in a genetically different individual. Conjugation requires direct cellular contact between the organisms.","definition_xrefs":["GOC:elh"],"gene_count":0,"genotype_count":0,"name":"obsolete conjugation (obsolete GO:0000746)","secondary_identifiers":["Wikipedia:Conjugation"],"termid":"GO:0000746"}


id: PR:P0CS84
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPBC1348.15 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P0CS84"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C1348.15 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1348.15","synonyms":[{"name":"Spom972h-SPBC1348.15","type":"exact"}],"termid":"PR:P0CS84"}


id: PBO:0029674
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_elongated_multinucleate_vegetative_cell_with_abnormal_septum_morphology","termid":"PBO:0029674"}


id: SO:0001208
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An EST read from the 5' end of a transcript that usually codes for a protein. These regions tend to be conserved across species and do not change much within a gene family.","direct_ancestors":[{"relation_name":"is_a","term_name":"EST","termid":"SO:0000345"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"five_prime_EST","synonyms":[{"name":"5' EST","type":"exact"},{"name":"five prime EST","type":"exact"}],"termid":"SO:0001208"}


id: MONDO:0031422
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mucolipidosis","termid":"MONDO:0019248"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002561"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0002561","MONDO:0005066"],"is_obsolete":false,"name":"familial mucolipidosis","secondary_identifiers":["OMIMPS:256550"],"termid":"MONDO:0031422","xrefs":{"Monarch":{"xref_id":"0031422"}}}


id: GO:0001555
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental growth process in which an oocyte irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present.","direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"developmental cell growth","termid":"GO:0048588"},{"relation_name":"part_of","term_name":"oocyte development","termid":"GO:0048599"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"oocyte growth","termid":"GO:0001555"}


id: PBO:0029617
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_swollen_mononucleate_monoseptate_vegetative_cell","termid":"PBO:0029617"}


id: PBO:0049595
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H3 clustered histone 13","termid":"PBO:0049595"}


id: PBO:0088861
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SEL1/TPR repeat protein, protein kinase inhibitor Nif1","termid":"PBO:0088861"}


id: PBO:0087857
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Transcriptional activator in nitrogen catabolite repression system; localization and activity regulated by quality of nitrogen source and Ure2p; full-length protein forms prion-like aggregates when overproduced","termid":"PBO:0087857"}


id: PBO:0070536
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 2","termid":"PBO:0070536"}


id: PBO:0064094
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PITRM1 antisense RNA 1","termid":"PBO:0064094"}


id: MONDO:1011557
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Metabolic syndrome that occurs in horse.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic syndrome, non-human animal","termid":"MONDO:1011404"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metabolic syndrome, horse","secondary_identifiers":["OMIA:001898-9796"],"termid":"MONDO:1011557","xrefs":{"Monarch":{"xref_id":"1011557"}}}


id: MOD:00081
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-glutamic acid residue to L-glutamate 5-methyl ester.","definition_xrefs":["PubMed:16888","DeltaMass:167","PubMed:6300110","OMSSA:17","RESID:AA0072#GLU","Unimod:34#E","OMSSA:70"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-glutamic acid 5-methyl ester","termid":"MOD:01453"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"L-glutamic acid 5-methyl ester (Glu)","synonyms":[{"name":"(2S)-2-amino-5-methoxy-5-oxopentanoic acid","type":"exact"},{"name":"(5)-methyl L-hydrogen glutamate","type":"exact"},{"name":"2-aminopentanedioic acid 5-methyl ester","type":"exact"},{"name":"5-methyl L-2-aminoglutarate","type":"exact"},{"name":"5-methyl L-glutamate","type":"exact"},{"name":"5-methyl esterified L-glutamic acid","type":"exact"},{"name":"L-glutamic acid 5-methyl ester","type":"exact"},{"name":"MOD_RES Glutamate methyl ester (Glu)","type":"exact"},{"name":"Methyl","type":"related"},{"name":"Methylation","type":"related"},{"name":"O-methyl Glutamyl","type":"exact"},{"name":"O5MeGlu","type":"exact"},{"name":"glutamic acid 5-methyl ester","type":"exact"},{"name":"glutamic acid gamma-methyl ester","type":"exact"},{"name":"meestere","type":"exact"},{"name":"methyl ester","type":"related"},{"name":"methyle","type":"exact"}],"termid":"MOD:00081"}


id: GO:1900414
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in regulation of cytokinesis.","definition_xrefs":["GOC:mah","GOC:TermGenie","PMID:15509866"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of cytokinesis by regulation of transcription from RNA polymerase II promoter (obsolete GO:1900414)","termid":"GO:1900414"}


id: GO:1990180
data:
  {"annotated_genes":["SJAG_04885","SJAG_01704","SJAG_02288","SJAG_00997"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71804,82196,89545,119917],"is_not":false,"summary":null,"term":"GO:1990180"}]},"cv_name":"biological_process","definition":"The process in which the 3' end of a pre-tRNA molecule is converted to that of a mature tRNA in the mitochondrion.","definition_xrefs":["GOC:mah","GOC:TermGenie","PMID:23928301"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial RNA 3'-end processing","termid":"GO:0000965"},{"relation_name":"is_a","term_name":"tRNA 3'-end processing","termid":"GO:0042780"},{"relation_name":"is_a","term_name":"mitochondrial tRNA processing","termid":"GO:0090646"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00997":null,"SJAG_01704":null,"SJAG_02288":null,"SJAG_04885":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140053"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006399"},{"rel_name":"is_a","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0140053","GO:0008150","GO:0006399"],"is_obsolete":false,"name":"mitochondrial tRNA 3'-end processing","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"tRNA 3' processing in mitochondria","type":"exact"},{"name":"tRNA 3' processing in mitochondrion","type":"exact"},{"name":"tRNA 3'-end processing in mitochondria","type":"exact"}],"termid":"GO:1990180","terms_by_termid":{"GO:1990180":null}}


id: GO:0043750
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of one or more alpha-D-mannose residues from GDP-mannose to positions 2,6 and others in 1-phosphatidyl-myo-inositol.","definition_xrefs":["EC:2.4.1.345"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016757","GO:0003824"],"is_obsolete":false,"name":"phosphatidylinositol alpha-mannosyltransferase activity","secondary_identifiers":["RHEA:47368","MetaCyc:2.4.1.57-RXN"],"synonyms":[{"name":"GDP mannose-phosphatidyl-myo-inositol alpha-mannosyltransferase activity","type":"exact"},{"name":"GDP mannose:1-phosphatidyl-myo-inositol alpha-D-mannosyltransferase activity","type":"exact"},{"name":"GDP-mannose:1-phosphatidyl-1D-myo-inositol alpha-D-mannosyltransferase activity","type":"exact"},{"name":"GDPmannose:1-phosphatidyl-myo-inositol alpha-D-mannosyltransferase activity","type":"exact"},{"name":"guanosine diphosphomannose-phosphatidyl-inositol alpha-mannosyltransferase activity","type":"exact"},{"name":"phosphatidyl-myo-inositol alpha-mannosyltransferase activity","type":"exact"}],"termid":"GO:0043750"}


id: PBO:0068964
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 208, pseudogene","termid":"PBO:0068964"}


id: MONDO:0006968
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Compression of the rotator cuff tendons and subacromial bursa between the humeral head and structures that make up the coracoacromial arch and the humeral tuberosities. This condition is associated with subacromial bursitis and rotator cuff (largely supraspinatus) and bicipital tendon inflammation, with or without degenerative changes in the tendon. Pain that is most severe when the arm is abducted in an arc between 40 and 120 degrees, sometimes associated with tears in the rotator cuff, is the chief symptom. (From Jablonski's Dictionary of Syndromes and Eponymic Diseases, 2d ed)","definition_xrefs":["MESH:D019534"],"direct_ancestors":[{"relation_name":"is_a","term_name":"arthropathy","termid":"MONDO:0006816"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"shoulder impingement syndrome","secondary_identifiers":["SCTID:202849001","ICD10CM:M75.4","UMLS:C0376685","EFO:1001178","ICD9:726.2","MedDRA:10049039","DOID:14276","MEDGEN:138249"],"synonyms":[{"name":"Impingement syndrome of shoulder region","type":"exact"},{"name":"shoulder impingement syndrome (disorder) [ambiguous]","type":"exact"},{"name":"subacromial impingement","type":"exact"}],"termid":"MONDO:0006968","xrefs":{"Monarch":{"xref_id":"0006968"}}}


id: MONDO:0005098
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A sudden loss of neurological function secondary to hemorrhage or ischemia in the brain parenchyma due to a vascular event.","definition_xrefs":["NCIT:C3390"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cerebrovascular disorder","termid":"MONDO:0011057"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stroke disorder","secondary_identifiers":["HP:0001297","MEDGEN:52522","MESH:D020521","NIFSTD:birnlex_12783","SCTID:230690007","UMLS:C0038454","EFO:0000712"],"synonyms":[{"name":"CVA","type":"exact"},{"name":"CVA, cerebrovascular accident","type":"exact"},{"name":"cerebral infarction","type":"related"},{"name":"cerebrovascular accident","type":"exact"},{"name":"cerebrovascular accident, (CVA)","type":"exact"},{"name":"stroke","type":"exact"},{"name":"stroke syndrome","type":"exact"},{"name":"syndrome, stroke","type":"exact"},{"name":"undetermined stroke","type":"exact"}],"termid":"MONDO:0005098","xrefs":{"Monarch":{"xref_id":"0005098"}}}


id: GO:0090354
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving auxins, plant hormones that regulate aspects of plant growth.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of hormone metabolic process","termid":"GO:0032350"},{"relation_name":"regulates","term_name":"auxin metabolic process","termid":"GO:0009850"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of auxin metabolic process","synonyms":[{"name":"regulation of auxin metabolism","type":"exact"}],"termid":"GO:0090354"}


id: PBO:0082286
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Arf3p polarization-specific docking factor; required for the polarized distribution of the ADP-ribosylation factor, Arf3p; participates in polarity development and maintenance of a normal haploid budding pattern; interacts with Cnm7p","termid":"PBO:0082286"}


id: PBO:0082049
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3,4-dihydroxy-2-butanone-4-phosphate synthase (DHBP synthase); required for riboflavin biosynthesis from ribulose-5-phosphate, also has an unrelated function in mitochondrial respiration","termid":"PBO:0082049"}


id: RO:0002226
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"x develops_in y if x is located in y whilst x is developing","direct_ancestors":[{"relation_name":"is_a","term_name":"developmentally_preceded_by","termid":"RO:0002258"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"develops_in","termid":"RO:0002226"}


id: PBO:0061197
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nitric oxide associated 1","termid":"PBO:0061197"}


id: PBO:0077332
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 69","termid":"PBO:0077332"}


id: GO:0061598
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction ATP + molybdopterin = diphosphate + adenylyl-molybdopterin.","definition_xrefs":["EC:2.7.7.75","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenylyltransferase activity","termid":"GO:0070566"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016779"}],"interesting_parent_ids":["GO:0016779","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"molybdopterin adenylyltransferase activity","secondary_identifiers":["RHEA:31331"],"termid":"GO:0061598"}


id: MONDO:1012653
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any disorder of sexual differentiation that occurs in horses due to a mutation in the SRY gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"difference of sexual differentiation, non-human animal","termid":"MONDO:0700105"},{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"XY sex reversal, SRY-related, horse","secondary_identifiers":["OMIA:001230-9796"],"termid":"MONDO:1012653","xrefs":{"Monarch":{"xref_id":"1012653"}}}


id: MONDO:0003024
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant vascular neoplasm arising from the breast.","definition_xrefs":["NCIT:C5184"],"direct_ancestors":[{"relation_name":"is_a","term_name":"breast sarcoma","termid":"MONDO:0002490"},{"relation_name":"is_a","term_name":"angiosarcoma","termid":"MONDO:0016982"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"breast angiosarcoma","secondary_identifiers":["MEDGEN:272382","DOID:4511","MESH:C536368","UMLS:C1332614","ONCOTREE:BA","GARD:9974"],"synonyms":[{"name":"BA","type":"related"},{"name":"angiosarcoma (disease) of breast","type":"exact"},{"name":"angiosarcoma of breast","type":"exact"},{"name":"angiosarcoma of the breast","type":"exact"},{"name":"breast angiosarcoma","type":"exact"},{"name":"breast angiosarcoma (disease)","type":"exact"},{"name":"breast hemangiosarcoma","type":"exact"},{"name":"hemangiosarcoma of breast","type":"exact"},{"name":"hemangiosarcoma of the breast","type":"exact"}],"termid":"MONDO:0003024","xrefs":{"Monarch":{"xref_id":"0003024"}}}


id: PBO:0044843
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defensin beta 130B","termid":"PBO:0044843"}


id: MONDO:0000404
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete cell type cancer (obsolete MONDO:0000404)","termid":"MONDO:0000404","xrefs":{"Monarch":{"xref_id":"0000404"}}}


id: MONDO:0012919
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inherited susceptibility or predisposition to developing type 1 diabetes mellitus in which the cause of the disease is a mutation in the HNF1A gene.","definition_xrefs":["MONDO:patterns/inherited_susceptibility","MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"type 1 diabetes mellitus","termid":"MONDO:0005147"},{"relation_name":"is_a","term_name":"diabetes mellitus, insulin-dependent, X-linked, susceptibility to","termid":"MONDO:0010255"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"type 1 diabetes mellitus 20","secondary_identifiers":["UMLS:C2675866","DOID:0110757","MESH:C567286","MEDGEN:382706","OMIM:612520"],"synonyms":[{"name":"HNF1A type 1 diabetes mellitus","type":"exact"},{"name":"IDDM20","type":"exact"},{"name":"diabetes mellitus, insulin-dependent, 20","type":"related"},{"name":"diabetes mellitus, insulin-dependent, type 20","type":"exact"},{"name":"insulin-dependent diabetes mellitus 20","type":"exact"},{"name":"type 1 diabetes mellitus caused by mutation in HNF1A","type":"exact"}],"termid":"MONDO:0012919","xrefs":{"Monarch":{"xref_id":"0012919"}}}


id: FYPO:0000046
data:
  {"alleles_by_uniquename":{"SJAG_00266:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00266","name":"atf1delta","uniquename":"SJAG_00266:allele-1"},"SJAG_00409:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00409","name":"gpd1delta","uniquename":"SJAG_00409:allele-1"},"SJAG_00514:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_00514","name":"scd1delta","uniquename":"SJAG_00514:allele-1"},"SJAG_01794:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01794","name":"scd2delta","uniquename":"SJAG_01794:allele-1"},"SJAG_01946:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01946","name":"cem1delta","uniquename":"SJAG_01946:allele-1"},"SJAG_02527:allele-1":{"allele_type":"disruption","description":"RNA sequencing revealed that only the 5' end of the disrupted allele showed low RNA expression and coverage","gene_uniquename":"SJAG_02527","name":"lig4::KanMX6","uniquename":"SJAG_02527:allele-1"},"SJAG_02592:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02592","name":"sty1delta","uniquename":"SJAG_02592:allele-1"},"SJAG_03198:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03198","name":"oar2delta","uniquename":"SJAG_03198:allele-1"},"SJAG_03198:allele-2":{"allele_type":"amino_acid_mutation","description":"Y189D cold sensitive","gene_uniquename":"SJAG_03198","name":"oar2-51","uniquename":"SJAG_03198:allele-2"},"SJAG_03198:allele-3":{"allele_type":"amino_acid_mutation","description":"R72A,L75A,R106A,L109A","gene_uniquename":"SJAG_03198","name":"oar2-dm12","synonyms":[{"name":"destruction box mutations","reference":"PMID:23786411","type":"exact"}],"uniquename":"SJAG_03198:allele-3"},"SJAG_03360:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03360","name":"shc1delta","uniquename":"SJAG_03360:allele-1"},"SJAG_03453:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03453","name":"ras1delta","uniquename":"SJAG_03453:allele-1"},"SJAG_04464:allele-1":{"allele_type":"amino_acid_mutation","description":"R152C","gene_uniquename":"SJAG_04464","name":"pim1-R152C","synonyms":[{"name":"Inferred CDK-phospho-mimic mutation","reference":"PMID:28954740","type":"exact"}],"uniquename":"SJAG_04464:allele-1"},"SJAG_04697:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04697","name":"gms1delta","uniquename":"SJAG_04697:allele-1"},"SJAG_04703:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04703","name":"for3delta","uniquename":"SJAG_04703:allele-1"},"SJAG_05207:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_05207","name":"cmp7delta","uniquename":"SJAG_05207:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[121330],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0005883"},{"annotations":[121447,121459],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0004481"},{"annotations":[121342,121490],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000082"},{"annotations":[121637,121401,121402,121403,121417],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0000080"},{"annotations":[121172,121168,121176,121524,121311],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001355"},{"annotations":[121487],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0001408"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which cell population growth is decreased relative to normal. Decreased growth may reflect a reduced growth rate (i.e. slower growth), growth that occurs to a lesser extent than normal, or both. Cell population growth refers to an increase in the number of cells in the population as individual cells grow and divide.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell population growth","termid":"FYPO:0000045"},{"relation_name":"is_a","term_name":"viable cell 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type"}]}]},"ras1delta":{"display_name":"ras1delta","display_uniquename":"ras1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03453:allele-1","expression":"Null"}]}]},"scd1delta":{"display_name":"scd1delta","display_uniquename":"scd1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_00514:allele-1","expression":"Null"}]}]},"scd2delta":{"display_name":"scd2delta","display_uniquename":"scd2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01794:allele-1","expression":"Null"}]}]},"shc1delta":{"display_name":"shc1delta","display_uniquename":"shc1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03360:allele-1","expression":"Null"}]}]},"sty1delta":{"display_name":"sty1delta","display_uniquename":"sty1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_02592:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002057"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0002058","FYPO:0000003","FYPO:0005447","FYPO:0001985","FYPO:0002057"],"is_obsolete":false,"name":"decreased cell population growth","references_by_uniquename":{"PMID:23786411":null,"PMID:28954740":null,"PMID:29566183":null,"PMID:30726171":null,"PMID:31150379":null,"PMID:32243490":null,"PMID:36058798":null,"PMID:37164017":null,"PMID:37233261":null,"PMID:40195311":null},"secondary_identifiers":["FYPO:0000222"],"single_locus_annotated_genes":["SJAG_02592","SJAG_03360","SJAG_00514","SJAG_01794","SJAG_04703","SJAG_05207","SJAG_00266","SJAG_00409","SJAG_04697","SJAG_03198","SJAG_02527","SJAG_03453","SJAG_04464","SJAG_01946"],"single_locus_genotype_uniquenames":["lig4::KanMX6-RNA_sequencing_revealed_that_only_the_5'_end_of_the_disrupted_allele_showed_low_RNA_expression_and_coverage-disruption-expression-knockdown","oar2-dm12-R72A,L75A,R106A,L109A-amino_acid_mutation-expression-overexpression","cem1delta","for3delta","scd1delta","atf1delta","oar2-51-Y189D_cold_sensitive-amino_acid_mutation-expression-overexpression","shc1delta","sty1delta","gms1delta","oar2delta","pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","ras1delta","gpd1delta","cmp7delta","scd2delta"],"synonyms":[{"name":"aerobic growth defects","type":"related"},{"name":"decreased aerobic cell population growth","type":"narrow"},{"name":"decreased growth","type":"broad"},{"name":"reduced aerobic cell population growth","type":"narrow"},{"name":"reduced cell population growth","type":"exact"},{"name":"slow aerobic cell population growth","type":"narrow"}],"termid":"FYPO:0000046","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000006":null,"FYECO:0000117":null,"FYECO:0000137":null,"FYPO:0000080":null,"FYPO:0000082":null,"FYPO:0001355":null,"FYPO:0001408":null,"FYPO:0004481":null,"FYPO:0005883":null,"FYPO_EXT:0000001":null,"FYPO_EXT:0000002":null}}


id: MONDO:0011546
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"transposition of the great arteries","termid":"MONDO:0000153"},{"relation_name":"is_a","term_name":"visceral heterotaxy","termid":"MONDO:0018677"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterotaxy, visceral, 2, autosomal","secondary_identifiers":["MEDGEN:237904","OMIM:605376","UMLS:C1415817"],"synonyms":[{"name":"DTGA2","type":"exact"},{"name":"HTX2","type":"related"},{"name":"Htx","type":"related"},{"name":"heterotaxy, visceral, 2, autosomal","type":"exact"},{"name":"transposition of the great arteries, dextro-looped 2","type":"exact"}],"termid":"MONDO:0011546","xrefs":{"Monarch":{"xref_id":"0011546"}}}


id: PBO:0057721
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1302-6","termid":"PBO:0057721"}


id: PBO:0071242
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L23a pseudogene 83","termid":"PBO:0071242"}


id: PBO:0040352
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase membrane subunit g pseudogene 1","termid":"PBO:0040352"}


id: PBO:0049485
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H1-8 pseudogene 1","termid":"PBO:0049485"}


id: MONDO:0003996
data:
  {"annotated_genes":["SJAG_04840","SJAG_01317","SJAG_02106","SJAG_04757","SJAG_01270","SJAG_01039","SJAG_02695","SJAG_16459","SJAG_00063","SJAG_02397","SJAG_01229","SJAG_03866","SJAG_00421","SJAG_03900","SJAG_00233","SJAG_04404","SJAG_00078","SJAG_04545"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87608,87609],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014796"},{"annotations":[88003,88002],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011658"},{"annotations":[87050],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014628"},{"annotations":[87617,87618],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014233"},{"annotations":[88749,88748],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011706"},{"annotations":[89147,89148],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008199"},{"annotations":[89111],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013625"},{"annotations":[88197,88198],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0957576"},{"annotations":[88386],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0036193"},{"annotations":[88918],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030676"},{"annotations":[88560],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008201"},{"annotations":[87662],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010747"}]},"cv_name":"mondo","definition":"A disease involving the basal ganglia.","direct_ancestors":[{"relation_name":"is_a","term_name":"brain disorder","termid":"MONDO:0005560"}],"gene_count":18,"genes_by_uniquename":{"SJAG_00063":null,"SJAG_00078":null,"SJAG_00233":null,"SJAG_00421":null,"SJAG_01039":null,"SJAG_01229":null,"SJAG_01270":null,"SJAG_01317":null,"SJAG_02106":null,"SJAG_02397":null,"SJAG_02695":null,"SJAG_03866":null,"SJAG_03900":null,"SJAG_04404":null,"SJAG_04545":null,"SJAG_04757":null,"SJAG_04840":null,"SJAG_16459":null},"genotype_count":0,"is_obsolete":false,"name":"basal ganglia disorder","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["EFO:0009533","ICD9:333.0","DOID:679","CSP:2057-3403","MEDGEN:1619147","MESH:D001480","UMLS:C4520981","SCTID:70835005"],"synonyms":[{"name":"basal ganglia disease","type":"exact"},{"name":"collection of basal ganglia disease","type":"exact"},{"name":"collection of basal ganglia disease or disorder","type":"exact"},{"name":"disease of basal ganglia","type":"exact"},{"name":"disease of collection of basal ganglia","type":"exact"},{"name":"disease or disorder of collection of basal ganglia","type":"exact"},{"name":"disorder of basal ganglia","type":"related"},{"name":"disorder of collection of basal ganglia","type":"exact"}],"termid":"MONDO:0003996","terms_by_termid":{"MONDO:0008199":null,"MONDO:0008201":null,"MONDO:0010747":null,"MONDO:0011658":null,"MONDO:0011706":null,"MONDO:0013625":null,"MONDO:0014233":null,"MONDO:0014628":null,"MONDO:0014796":null,"MONDO:0030676":null,"MONDO:0036193":null,"MONDO:0957576":null},"xrefs":{"Monarch":{"xref_id":"0003996"}}}


id: PR:Q9URZ5
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- vps1 gene.","definition_xrefs":["UniProtKB:Q9URZ5","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vacuolar protein sorting-associated protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC767.01c","synonyms":[{"name":"Spom972h-vps1","type":"exact"}],"termid":"PR:Q9URZ5"}


id: PBO:0090145
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pex16 family peroxisome import protein Pex16","termid":"PBO:0090145"}


id: PBO:0043678
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coronin 2B","termid":"PBO:0043678"}


id: MONDO:0011396
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A diffuse palmoplantar keratoderma, characterized by honeycomb palmoplantar hyperkeratosis associated with pseudoainhum of the fifth digit of the hand, ichthyosis and deafness. Keratoderma hereditarium mutilans with ichthyosis follows an autosomal dominant mode of transmission.","definition_xrefs":["Orphanet:79395"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diffuse palmoplantar keratoderma","termid":"MONDO:0017666"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"loricrin keratoderma","secondary_identifiers":["MEDGEN:395099","MESH:C565826","SCTID:717183001","GARD:16719","OMIM:604117","UMLS:C1858805"],"synonyms":[{"name":"Camisa disease","type":"exact"},{"name":"Vohwinkel syndrome with ichthyosis","type":"exact"},{"name":"Vohwinkel syndrome, variant form","type":"related"},{"name":"keratoderma hereditarium mutilans with ichthyosis","type":"exact"},{"name":"keratoderma-ichthyosiform dermatosis-elevated beta-glucuronidase syndrome","type":"exact"},{"name":"loricrin keratoderma","type":"exact"},{"name":"mutilating keratoderma with ichthyosis","type":"related"}],"termid":"MONDO:0011396","xrefs":{"Monarch":{"xref_id":"0011396"}}}


id: GO:0051140
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of natural killer T cell proliferation.","definition_xrefs":["PMID:12154375","ISBN:0781735149","PMID:9133426"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of alpha-beta T cell proliferation","termid":"GO:0046640"},{"relation_name":"is_a","term_name":"regulation of NK T cell activation","termid":"GO:0051133"},{"relation_name":"regulates","term_name":"NK T cell proliferation","termid":"GO:0001866"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of NK T cell proliferation","synonyms":[{"name":"regulation of NK T lymphocyte proliferation","type":"exact"},{"name":"regulation of NK T-cell proliferation","type":"exact"},{"name":"regulation of NK T-lymphocyte proliferation","type":"exact"},{"name":"regulation of NKT cell proliferation","type":"exact"},{"name":"regulation of NT cell proliferation","type":"exact"},{"name":"regulation of natural T cell proliferation","type":"exact"},{"name":"regulation of natural killer T cell proliferation","type":"exact"}],"termid":"GO:0051140"}


id: PBO:0014612
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dpb3 was previously considered to be SPAC17G8.03c but this new gene product appears to be the true ortholog of DPB3/POLE4 see TreeFam:TF103009","termid":"PBO:0014612"}


id: PBO:0001047
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis protein Tsr1 (predicted)","termid":"PBO:0001047"}


id: PBO:0028541
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-curved_septum","termid":"PBO:0028541"}


id: SO:0002161
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant where the copies of a short tandem repeat (STR) feature are either contracted or expanded.","direct_ancestors":[{"relation_name":"is_a","term_name":"sequence_length_variant","termid":"SO:0002160"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"short_tandem_repeat_change","synonyms":[{"name":"short tandem repeat change","type":"exact"},{"name":"str change","type":"exact"}],"termid":"SO:0002161"}


id: GO:0010419
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving the side chains of pectic rhamnogalacturonan II. A number of structurally distinct di- and oligosaccharides can be attached to the C-3 and C-2 of the backbone, respectively.","definition_xrefs":["GOC:tair_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rhamnogalacturonan II metabolic process","termid":"GO:0010396"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975"],"is_obsolete":false,"name":"rhamnogalacturonan II side chain metabolic process","synonyms":[{"name":"rhamnogalacturonan II side chain metabolism","type":"exact"}],"termid":"GO:0010419"}


id: GO:0070156
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of coupling phenylalanine to phenylalanyl-tRNA in a mitochondrion, catalyzed by phenylalanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.","definition_xrefs":["GOC:mah","GOC:mcc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenylalanyl-tRNA aminoacylation","termid":"GO:0006432"},{"relation_name":"is_a","term_name":"tRNA aminoacylation for mitochondrial protein translation","termid":"GO:0070127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0140053"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0006399"}],"interesting_parent_ids":["GO:0006399","GO:0140053","GO:0008150","GO:0006520","GO:0010467"],"is_obsolete":false,"name":"mitochondrial phenylalanyl-tRNA aminoacylation","termid":"GO:0070156"}


id: GO:0051233
data:
  {"annotated_genes":["SJAG_03048","SJAG_04745","SJAG_00930","SJAG_02266","SJAG_02542","SJAG_01429","SJAG_01297","SJAG_01805","SJAG_01371","SJAG_01837","SJAG_00082","SJAG_00697","SJAG_02045","SJAG_04841","SJAG_03073","SJAG_04412","SJAG_02336","SJAG_04140","SJAG_00723"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[103321,105439,120698,118648],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990385"},{"annotations":[102423,113149,91443,105441,118649,104247,78016,80619,93212,119562,120700,102939,91811,92806,96625,113855,110188,78939,95634],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990023"}]},"cv_name":"cellular_component","definition":"The area in the center of the spindle where the spindle microtubules from opposite poles overlap.","definition_xrefs":["PMID:15296749","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"spindle","termid":"GO:0005819"}],"gene_count":19,"genes_by_uniquename":{"SJAG_00082":null,"SJAG_00697":null,"SJAG_00723":null,"SJAG_00930":null,"SJAG_01297":null,"SJAG_01371":null,"SJAG_01429":null,"SJAG_01805":null,"SJAG_01837":null,"SJAG_02045":null,"SJAG_02266":null,"SJAG_02336":null,"SJAG_02542":null,"SJAG_03048":null,"SJAG_03073":null,"SJAG_04140":null,"SJAG_04412":null,"SJAG_04745":null,"SJAG_04841":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0015630"}],"interesting_parent_ids":["GO:0005575","GO:0015630"],"is_obsolete":false,"name":"spindle midzone","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"central spindle","type":"exact"},{"name":"spindle equator","type":"exact"}],"termid":"GO:0051233","terms_by_termid":{"GO:1990023":null,"GO:1990385":null}}


id: GO:0050655
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving dermatan sulfate proteoglycans, which consist of a core protein linked to a dermatan sulfate glycosaminoglycan. The dermatan sulfate chain is composed of the repeating disaccharide unit beta-(1,4)-D-hexuronic acid-beta-(1,3)-N-acetyl-D-galactosamine. The former can be a mixture of sulfated and nonsulfated D-glucuronic and L-iduronic acids, and the latter can be O-sulfated.","definition_xrefs":["PMID:17239763"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proteoglycan metabolic process","termid":"GO:0006029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dermatan sulfate proteoglycan metabolic process","synonyms":[{"name":"chondroitin sulfate B proteoglycan metabolic process","type":"exact"},{"name":"chondroitin sulfate B proteoglycan metabolism","type":"exact"},{"name":"dermatan sulfate proteoglycan metabolism","type":"exact"},{"name":"dermatan sulphate proteoglycan metabolic process","type":"exact"},{"name":"dermatan sulphate proteoglycan metabolism","type":"exact"}],"termid":"GO:0050655"}


id: PR:Q7Z9I4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- osr1 gene.","definition_xrefs":["UniProtKB:Q7Z9I4","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized oxidoreductase C663.06c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC663.06c","synonyms":[{"name":"Spom972h-osr1","type":"exact"}],"termid":"PR:Q7Z9I4"}


id: PBO:0085884
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; involved in ER-associated protein degradation; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and is induced in response to the DNA-damaging agent MMS; YMR184W is not an essential gene; protein abundance increases in response to DNA replication stress","termid":"PBO:0085884"}


id: GO:1902785
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an undecane stimulus.","definition_xrefs":["GOC:mengo_curators","GO_REF:0000071","PMID:23826995","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to alkane","termid":"GO:1902779"},{"relation_name":"is_a","term_name":"response to undecane","termid":"GO:1902784"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to undecane","termid":"GO:1902785"}


id: GO:0072250
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the developmental fate of a cell becomes restricted such that it will develop into a metanephric glomerular visceral epithelial cell. A metanephric glomerular visceral epithelial cell is a specialized epithelial cell that contains 'feet' that interdigitate with the 'feet' of other glomerular epithelial cells in the metanephros.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"podocyte cell fate commitment","termid":"GO:0072149"},{"relation_name":"is_a","term_name":"metanephric glomerular epithelial cell fate commitment","termid":"GO:0072315"},{"relation_name":"part_of","term_name":"metanephric podocyte differentiation","termid":"GO:0072248"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric podocyte cell fate commitment","synonyms":[{"name":"metanephric glomerular visceral epithelial cell fate commitment","type":"exact"}],"termid":"GO:0072250"}


id: MONDO:0016868
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndrome caused by partial chromosomal deletion","termid":"MONDO:0000761"},{"relation_name":"is_a","term_name":"chromosome 3 disorder","termid":"MONDO:0700010"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"partial deletion of chromosome 3","secondary_identifiers":["Orphanet:261776","GARD:20791","UMLS:C5679651","MEDGEN:1826012"],"synonyms":[{"name":"partial deletion of chromosome type 3","type":"exact"},{"name":"partial monosomy of chromosome 3","type":"exact"}],"termid":"MONDO:0016868","xrefs":{"Monarch":{"xref_id":"0016868"}}}


id: MONDO:0016741
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete teratoma of the central nervous system (obsolete MONDO:0016741)","termid":"MONDO:0016741","xrefs":{"Monarch":{"xref_id":"0016741"}}}


id: GO:0007418
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the ventral midline over time, from its formation to the mature structure. In protostomes (such as insects, snails and worms) as well as deuterostomes (vertebrates), the midline is an embryonic region that functions in patterning of the adjacent nervous tissue. The ventral midline in insects is a cell population extending along the ventral surface of the embryo and is the region from which cells detach to form the ventrally located nerve cords. In vertebrates, the midline is originally located dorsally. During development, it folds inwards and becomes the ventral part of the dorsally located neural tube and is then called the ventral midline, or floor plate.","definition_xrefs":["GOC:go_curators","PMID:12075342","GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"central nervous system development","termid":"GO:0007417"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ventral midline development","termid":"GO:0007418"}


id: PATO:0001580
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A contractility which is relatively high.","definition_xrefs":["PATO:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"contractile","termid":"PATO:0001690"},{"relation_name":"is_a","term_name":"increased object quality","termid":"PATO:0002305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased contractility","synonyms":[{"name":"high contractility","type":"exact"}],"termid":"PATO:0001580"}


id: PBO:0079218
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thiosulfate sulfurtransferase like domain containing 3","termid":"PBO:0079218"}


id: GO:0160071
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulation of double fertilization forming a zygote and endosperm process that ensures that only a single sperm cell fertilizes one egg cell and another single sperm cell fertilizes one central cell.","definition_xrefs":["PMID:27951463"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of double fertilization forming a zygote and endosperm","termid":"GO:0080155"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"prevention of polyspermy during double fertilization","termid":"GO:0160071"}


id: MONDO:0021481
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign neoplasm that involves the submandibular gland.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"submandibular gland neoplasm","termid":"MONDO:0021244"},{"relation_name":"is_a","term_name":"benign neoplasm of major salivary gland","termid":"MONDO:0021492"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"benign neoplasm of submandibular gland","secondary_identifiers":["UMLS:C0685988","icd11.foundation:564841249","MEDGEN:151936","SCTID:92415001","NCIT:C4891"],"synonyms":[{"name":"benign neoplasm of the submandibular gland","type":"exact"},{"name":"benign submandibular gland neoplasm","type":"exact"},{"name":"benign submandibular gland tumor","type":"exact"},{"name":"benign submandibular gland tumour","type":"exact"},{"name":"benign tumor of submandibular gland","type":"exact"},{"name":"benign tumor of the submandibular gland","type":"exact"},{"name":"benign tumour of submandibular gland","type":"exact"},{"name":"benign tumour of the submandibular gland","type":"exact"},{"name":"submandibular gland benign neoplasm","type":"exact"}],"termid":"MONDO:0021481","xrefs":{"Monarch":{"xref_id":"0021481"}}}


id: GO:1901899
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of relaxation of cardiac muscle.","definition_xrefs":["GOC:rl","PMID:19708671","GOC:BHF","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of relaxation of muscle","termid":"GO:1901079"},{"relation_name":"is_a","term_name":"regulation of relaxation of cardiac muscle","termid":"GO:1901897"},{"relation_name":"positively_regulates","term_name":"relaxation of cardiac muscle","termid":"GO:0055119"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of relaxation of cardiac muscle","synonyms":[{"name":"activation of relaxation of cardiac muscle","type":"narrow"},{"name":"up regulation of relaxation of cardiac muscle","type":"exact"},{"name":"up-regulation of relaxation of cardiac muscle","type":"exact"},{"name":"upregulation of relaxation of cardiac muscle","type":"exact"}],"termid":"GO:1901899"}


id: PBO:0069253
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 508, pseudogene","termid":"PBO:0069253"}


id: PBO:0017865
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements E. coli fbp","termid":"PBO:0017865"}


id: PBO:0002787
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"urease Ure2","termid":"PBO:0002787"}


id: MONDO:0011309
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"hyperthyroidism","termid":"MONDO:0004425"},{"relation_name":"is_a","term_name":"pregnancy disorder","termid":"MONDO:0024575"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"familial gestational hyperthyroidism","secondary_identifiers":["SCTID:703309000","Orphanet:99819","MEDGEN:355106","DOID:0081102","MESH:C566384","icd11.foundation:811229304","OMIM:603373","UMLS:C1863959","GARD:16913","ICD9:648.10","ICD9:242.80"],"synonyms":[{"name":"hyperthyroidism, familial gestational","type":"related"}],"termid":"MONDO:0011309","xrefs":{"Monarch":{"xref_id":"0011309"}}}


id: PBO:0053094
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"late cornified envelope 3B","termid":"PBO:0053094"}


id: PBO:0091018
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rab family GTPase Ryh1","termid":"PBO:0091018"}


id: GO:0030441
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mcc"],"gene_count":0,"genotype_count":0,"name":"obsolete activation of MAPKKK during sporulation (sensu Fungi) (obsolete GO:0030441)","synonyms":[{"name":"activation of MAPKKK during sporulation (sensu Fungi)","type":"exact"}],"termid":"GO:0030441"}


id: PBO:0066429
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAS like estrogen regulated growth inhibitor","termid":"PBO:0066429"}


id: MONDO:0011436
data:
  {"annotated_genes":["SJAG_03495"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87074],"is_not":false,"summary":null,"term":"MONDO:0011436"}]},"cv_name":"mondo","definition":"Spinal muscular atrophy with respiratory distress type 1 is a rare genetic motor neuron disease characterized by severe respiratory distress/respiratory failure in association with diaphragmatic eventration and palsy, as well as progressive, symmetrical, distal-to-proximal muscle weakness and atrophy (in lower limbs especially). Patients typically have a history of intrauterine growth retardation, low birth weight, feeble cry, weak suck and failure to thrive and present with inspiratory stridor, recurrent episodes of dyspnea or apnea, cyanosis and absent deep tendon reflexes. Kyphosis/scoliosis, foot deformities and joint contractures are frequently associated features.","definition_xrefs":["Orphanet:98920"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spinal muscular atrophy","termid":"MONDO:0001516"},{"relation_name":"is_a","term_name":"neuronopathy, distal hereditary motor, autosomal recessive","termid":"MONDO:0015363"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03495":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0006025","MONDO:0005244"],"is_obsolete":false,"name":"autosomal recessive distal spinal muscular atrophy 1","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C1858517","NORD:1994","DOID:0111064","MEDGEN:388083","MESH:C536880","ICD9:335.19","GARD:8592","OMIM:604320","SCTID:711483003"],"synonyms":[{"name":"DSMA1","type":"exact"},{"name":"HMN 6","type":"related"},{"name":"HMN VI","type":"related"},{"name":"Hmn6","type":"related"},{"name":"IGHMBP2 spinal muscular atrophy","type":"exact"},{"name":"SIANRF","type":"exact"},{"name":"SMARD1","type":"exact"},{"name":"Spinal Muscular Atrophy with Respiratory Distress","type":"exact"},{"name":"autosomal recessive distal spinal muscular atrophy 1","type":"exact"},{"name":"autosomal recessive distal spinal muscular atrophy type 1","type":"exact"},{"name":"autosomal recessive spinal muscular atrophy with respiratory distress","type":"exact"},{"name":"dHMN6","type":"exact"},{"name":"dSMA1","type":"exact"},{"name":"diaphragmatic spinal muscular atrophy","type":"exact"},{"name":"distal hereditary motor neuropathy type 6","type":"exact"},{"name":"distal-HMN type 6","type":"exact"},{"name":"neuronopathy, Severe infantile axonal, with respiratory failure","type":"related"},{"name":"neuronopathy, distal hereditary motor, type 6","type":"related"},{"name":"neuronopathy, distal hereditary motor, type VI","type":"related"},{"name":"severe infantile axonal neuropathy with respiratory failure","type":"related"},{"name":"severe infantile axonal neuropathy with respiratory failure type 1","type":"exact"},{"name":"spinal muscular atrophy caused by mutation in IGHMBP2","type":"exact"},{"name":"spinal muscular atrophy with respiratory distress 1","type":"related"},{"name":"spinal muscular atrophy with respiratory distress type 1","type":"exact"},{"name":"spinal muscular atrophy, diaphragmatic","type":"related"},{"name":"spinal muscular atrophy, distal, autosomal recessive, 1","type":"related"},{"name":"spinal muscular atrophy, distal, autosomal recessive, type 1","type":"exact"}],"termid":"MONDO:0011436","terms_by_termid":{"MONDO:0011436":null},"xrefs":{"Monarch":{"xref_id":"0011436"}}}


id: GO:0005896
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A hexameric protein complex consisting of two molecules each of interleukin-6, interleukin-6 receptor alpha chain, and gp-130.","definition_xrefs":["PMID:8083235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane signaling receptor complex","termid":"GO:0098802"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005886","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"interleukin-6 receptor complex","synonyms":[{"name":"IL-6 receptor complex","type":"exact"}],"termid":"GO:0005896"}


id: PBO:0061784
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OCLN pseudogene 1","termid":"PBO:0061784"}


id: PBO:0029553
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_on_ethyl_methanesulfonate","termid":"PBO:0029553"}


id: GO:0072396
data:
  {"annotated_genes":["SJAG_01805","SJAG_04332","SJAG_00082","SJAG_04183","SJAG_04140","SJAG_03048","SJAG_01837"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[95650,91824,104279,118664,113163],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140429"},{"annotations":[106062],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0072429"},{"annotations":[104290],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0072441"},{"annotations":[104291],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990820"},{"annotations":[96401,104292],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0072435"}]},"cv_name":"biological_process","definition":"A process that occurs in response to signals generated as a result of cell cycle checkpoint signaling.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to biotic stimulus","termid":"GO:0071216"},{"relation_name":"is_a","term_name":"cellular response to endogenous stimulus","termid":"GO:0071495"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00082":null,"SJAG_01805":null,"SJAG_01837":null,"SJAG_03048":null,"SJAG_04140":null,"SJAG_04183":null,"SJAG_04332":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to cell cycle checkpoint signaling","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0072405","GO:0072408"],"synonyms":[{"name":"G1/S transition checkpoint effector process","type":"related"},{"name":"G2/M transition checkpoint effector process","type":"related"},{"name":"cell cycle checkpoint effector process","type":"exact"},{"name":"response to G1/S transition checkpoint signaling","type":"related"},{"name":"response to G2/M transition checkpoint signaling","type":"related"},{"name":"response to signal involved in G1/S transition checkpoint","type":"related"},{"name":"response to signal involved in G2/M transition checkpoint","type":"related"},{"name":"response to signal involved in cell cycle checkpoint","type":"exact"}],"termid":"GO:0072396","terms_by_termid":{"GO:0072429":null,"GO:0072435":null,"GO:0072441":null,"GO:0140429":null,"GO:1990820":null}}


id: GO:1905691
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The disaggregation of a lipid particle into its constituent components.","definition_xrefs":["GOC:autophagy","GOC:TermGenie","GO_REF:0000079","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipid droplet organization","termid":"GO:0034389"},{"relation_name":"is_a","term_name":"organelle disassembly","termid":"GO:1903008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lipid droplet disassembly","synonyms":[{"name":"adiposome disassembly","type":"exact"},{"name":"lipid body disassembly","type":"exact"},{"name":"lipid droplet reserve breakdown","type":"exact"},{"name":"lipid particle disassembly","type":"exact"}],"termid":"GO:1905691"}


id: PBO:0061356
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleophosmin 1 pseudogene 14","termid":"PBO:0061356"}


id: MONDO:0003587
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare malignant neoplasm arising from adipocytes, that occurs in children. The tumor maybe one of several histologic types including well-differentiated, dedifferentiated, myxoid/round cell, and pleomorphic liposarcoma.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"liposarcoma","termid":"MONDO:0005060"},{"relation_name":"is_a","term_name":"childhood malignant neoplasm","termid":"MONDO:0006517"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"pediatric liposarcoma","secondary_identifiers":["UMLS:C0279984","DOID:5695","MEDGEN:83580","NANDO:2200065","NCIT:C8091"],"synonyms":[{"name":"childhood liposarcoma","type":"exact"},{"name":"liposarcoma","type":"broad"},{"name":"pediatric liposarcoma","type":"exact"}],"termid":"MONDO:0003587","xrefs":{"Monarch":{"xref_id":"0003587"}}}


id: PBO:0079202
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TSPY like 6","termid":"PBO:0079202"}


id: MONDO:0020648
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"postinfectious encephalitis","termid":"MONDO:0020068"},{"relation_name":"is_a","term_name":"post-viral disorder","termid":"MONDO:0021674"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rubella encephalitis","secondary_identifiers":["SCTID:192689006","UMLS:C0238099","MEDGEN:536765"],"termid":"MONDO:0020648","xrefs":{"Monarch":{"xref_id":"0020648"}}}


id: GO:0045226
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the formation of polysaccharides used in extracellular structures.","definition_xrefs":["GOC:ai","GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete extracellular polysaccharide biosynthetic process (obsolete GO:0045226)","synonyms":[{"name":"extracellular polysaccharide anabolism","type":"exact"},{"name":"extracellular polysaccharide biosynthesis","type":"exact"},{"name":"extracellular polysaccharide formation","type":"exact"},{"name":"extracellular polysaccharide synthesis","type":"exact"}],"termid":"GO:0045226"}


id: MONDO:0001300
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inherited or acquired peripheral neuropathy affecting the autonomic nervous system. It results in disruption of the involuntary body functions. Inherited causes include Fabry disease and porphyrias. Acquired causes include diabetes, uremia, hepatic disorders, vitamin deficiencies, toxins, and drug toxicities.","definition_xrefs":["NCIT:C27033"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autonomic nervous system disorder","termid":"MONDO:0001292"},{"relation_name":"is_a","term_name":"peripheral neuropathy","termid":"MONDO:0005244"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244"],"is_obsolete":false,"name":"autonomic neuropathy","secondary_identifiers":["CSP:2042-2001","DOID:11504","CSP:2049-9000","MEDGEN:82621","SCTID:277879009","DOID:0060054","UMLS:C0259749"],"synonyms":[{"name":"autonomic nervous system peripheral neuropathy","type":"exact"},{"name":"autonomic peripheral neuropathy","type":"exact"},{"name":"peripheral neuropathy of autonomic nervous system","type":"exact"}],"termid":"MONDO:0001300","xrefs":{"Monarch":{"xref_id":"0001300"}}}


id: FYPO:0002251
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a vegetative cell is inviable and has a larger volume, and is longer, than normal. In a swollen cell, both length and diameter may be greater than normal, although the cell is only considered elongated if the length:diameter ratio is also greater than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"swollen vegetative cell","termid":"FYPO:0000646"},{"relation_name":"is_a","term_name":"elongated vegetative cell","termid":"FYPO:0001122"},{"relation_name":"is_a","term_name":"swollen elongated cell","termid":"FYPO:0001429"},{"relation_name":"is_a","term_name":"inviable vegetative cell","termid":"FYPO:0001489"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000005","FYPO:0000002","FYPO:0000004","FYPO:0001320"],"is_obsolete":false,"name":"inviable swollen elongated vegetative cell","synonyms":[{"name":"inviable elongated cell with increased cell volume","type":"exact"},{"name":"inviable enlarged elongated cell","type":"related"},{"name":"inviable large elongated cell","type":"related"},{"name":"inviable swollen elongated cell during vegetative growth","type":"exact"},{"name":"inviable swollen elongated vegetative cell during mitotic cell cycle","type":"related"},{"name":"lethal; swollen elongated vegetative cell","type":"exact"}],"termid":"FYPO:0002251"}


id: PBO:0071422
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L31 pseudogene 28","termid":"PBO:0071422"}


id: MONDO:0043195
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rubinstein Taybi like syndrome","secondary_identifiers":["UMLS:C2931052","MEDGEN:418972","MESH:C535877","OMIM:180850"],"synonyms":[{"name":"Broad terminal phalanges of the thumbs and great toes, antimongoloid slant of the palpebral fissures, and characteristic beaked noses","type":"related"}],"termid":"MONDO:0043195","xrefs":{"Monarch":{"xref_id":"0043195"}}}


id: MONDO:0004292
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An exophytic, slow growing, well differentiated and non-metastasizing squamous cell carcinoma with pushing margins that arises from the supraglottic area of the larynx.","definition_xrefs":["NCIT:C8191"],"direct_ancestors":[{"relation_name":"is_a","term_name":"larynx verrucous carcinoma","termid":"MONDO:0002766"},{"relation_name":"is_a","term_name":"supraglottis squamous cell carcinoma","termid":"MONDO:0004293"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"supraglottis verrucous carcinoma","secondary_identifiers":["UMLS:C0280331","DOID:7586","MEDGEN:76098"],"synonyms":[{"name":"supraglottic part of larynx verrucous carcinoma","type":"exact"},{"name":"supraglottic verrucous carcinoma","type":"exact"},{"name":"supraglottis verrucous carcinoma","type":"exact"},{"name":"verrucous carcinoma of supraglottis","type":"exact"},{"name":"verrucous carcinoma of the supraglottis","type":"exact"}],"termid":"MONDO:0004292","xrefs":{"Monarch":{"xref_id":"0004292"}}}


id: GO:0018982
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving vanillin, an aromatic hydrocarbon which occurs naturally in black vanilla bean pods and can be obtained as a by-product of the pulp and paper industry by the oxidative breakdown of lignin.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde metabolic process","termid":"GO:0006081"},{"relation_name":"is_a","term_name":"ether metabolic process","termid":"GO:0018904"},{"relation_name":"is_a","term_name":"phenol-containing compound metabolic process","termid":"GO:0018958"},{"relation_name":"is_a","term_name":"benzene-containing compound metabolic process","termid":"GO:0042537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"vanillin metabolic process","secondary_identifiers":["UM-BBD_pathwayID:van"],"synonyms":[{"name":"vanillic aldehyde metabolic process","type":"exact"},{"name":"vanillic aldehyde metabolism","type":"exact"},{"name":"vanillin metabolism","type":"exact"}],"termid":"GO:0018982"}


id: GO:0047893
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-glucose + a flavonol = UDP + a flavonol 3-O-D-glucoside.","definition_xrefs":["EC:2.4.1.91","MetaCyc:FLAVONOL-3-O-GLUCOSYLTRANSFERASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glucosyltransferase activity","termid":"GO:0035251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674","GO:0016757"],"is_obsolete":false,"name":"flavonol 3-O-glucosyltransferase activity","secondary_identifiers":["RHEA:22300"],"synonyms":[{"name":"GTI","type":"related"},{"name":"UDP-glucose flavonol 3-O-glucosyltransferase activity","type":"related"},{"name":"UDP-glucose:flavonol 3-O-D-glucosyltransferase activity","type":"related"},{"name":"UDP-glucose:flavonol 3-O-glucosyltransferase activity","type":"related"},{"name":"UDPG:flavonoid-3-O-glucosyltransferase activity","type":"related"},{"name":"UDPglucose:flavonol 3-O-D-glucosyltransferase activity","type":"related"},{"name":"uridine diphosphoglucose-flavonol 3-O-glucosyltransferase activity","type":"related"}],"termid":"GO:0047893"}


id: PBO:0049154
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GRAM domain containing 1B","termid":"PBO:0049154"}


id: PBO:0082100
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"8-oxo-dGTP diphosphatase of the Nudix hydrolase family; converts diphosphates of damaged forms of thiamin to monophosphates; GST fusion protein is a Dbf2p-Mob1p phosphorylation target in a proteome chip analysis; synthetic lethal with PH085 deletion; plays a role in restricting Ty1 transposition","termid":"PBO:0082100"}


id: FYPO:0007471
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which any process of heterochromatin organization is abnormal during G0 phase. Heterochromatin organization results in the specification, formation or maintenance of the physical structure of eukaryotic heterochromatin, a compact and highly condensed form of chromatin.","definition_xrefs":["GO:0070828","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromatin organization during G0","termid":"FYPO:0003871"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0000641","FYPO:0001985"],"is_obsolete":false,"name":"abnormal heterochromatin organization during G0","synonyms":[{"name":"abnormal heterochromatin organisation during G0","type":"exact"},{"name":"abnormal heterochromatin organization during cell quiescence","type":"exact"},{"name":"abnormal heterochromatin organization during quiescence","type":"exact"}],"termid":"FYPO:0007471"}


id: MONDO:0010906
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any orofacial cleft in which the cause of the disease is a mutation in the BMP4 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cleft lip/palate","termid":"MONDO:0016044"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"orofacial cleft 11","secondary_identifiers":["DOID:0080404","GARD:18303","UMLS:C2677434","OMIM:600625","MEDGEN:436944"],"synonyms":[{"name":"BMP4 orofacial cleft","type":"exact"},{"name":"OFC11","type":"related"},{"name":"cleft Lip, congenital Healed","type":"related"},{"name":"cleft lip with or without cleft palate, nonsyndromic, 11","type":"related"},{"name":"congenital Healed cleft lip","type":"related"},{"name":"orofacial cleft 11","type":"exact"},{"name":"orofacial cleft caused by mutation in BMP4","type":"exact"},{"name":"orofacial cleft type 11","type":"exact"}],"termid":"MONDO:0010906","xrefs":{"Monarch":{"xref_id":"0010906"}}}


id: MONDO:0009361
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"X-linked hydrocephalus with stenosis of the aqueduct of Sylvius","termid":"MONDO:0010611"},{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"},{"relation_name":"is_a","term_name":"congenital hydrocephalus","termid":"MONDO:0016349"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320","MONDO:0006025"],"is_obsolete":false,"name":"autosomal recessive hydrocephalus due to congenital stenosis of aqueduct of Sylvius","secondary_identifiers":["MEDGEN:608953","UMLS:C0431355","OMIM:236635"],"synonyms":[{"name":"aqueductal stenosis","type":"related"},{"name":"hydrocephalus due to congenital stenosis of aqueduct of Sylvius","type":"exact"}],"termid":"MONDO:0009361","xrefs":{"Monarch":{"xref_id":"0009361"}}}


id: PBO:0044773
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD-box helicase 55","termid":"PBO:0044773"}


id: MONDO:0033545
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial DNA depletion syndrome","termid":"MONDO:0018158"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004069"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004069"],"is_obsolete":false,"name":"mitochondrial DNA depletion syndrome 19","secondary_identifiers":["MEDGEN:1770258","DOID:0070450","UMLS:C5436514","OMIM:618972","GARD:18370"],"synonyms":[{"name":"MITOCHONDRIAL DNA DEPLETION SYNDROME 19","type":"related"},{"name":"MTDPS19","type":"related"}],"termid":"MONDO:0033545","xrefs":{"Monarch":{"xref_id":"0033545"}}}


id: SO:0001105
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Residues which interact with a ligand.","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ligand_binding_site","termid":"SO:0001657"},{"relation_name":"is_a","term_name":"molecular_contact_region","termid":"SO:0100002"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"polypeptide_ligand_contact","secondary_identifiers":["BS:00157"],"synonyms":[{"name":"polypeptide ligand contact","type":"exact"},{"name":"protein-ligand interaction","type":"related"}],"termid":"SO:0001105"}


id: GO:0103043
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: alpha-D-ribose 1,2-cyclic phosphate 5-phosphate + H2O = alpha-D-ribose 1,5-bisphosphate + H+.","definition_xrefs":["EC:3.1.4.55"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphoric diester hydrolase activity","termid":"GO:0008081"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016788","GO:0016787"],"is_obsolete":false,"name":"phosphoribosyl 1,2-cyclic phosphate phosphodiesterase activity","secondary_identifiers":["RHEA:34795","MetaCyc:RXN0-6710"],"synonyms":[{"name":"5-phospho-alpha-D-ribosyl 1,2-cyclic phosphate phosphodiesterase activity","type":"related"}],"termid":"GO:0103043"}


id: MOD:00105
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-serine residue to L-serine amide.","definition_xrefs":["RESID:AA0096","PubMed:743209"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C1-amidated residue","termid":"MOD:00883"},{"relation_name":"is_a","term_name":"modified L-serine residue","termid":"MOD:00916"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-serine amide","synonyms":[{"name":"(2S)-2-amino-3-hydroxypropanamide","type":"exact"},{"name":"L-serine amide","type":"exact"},{"name":"MOD_RES Serine amide","type":"exact"},{"name":"SerN","type":"exact"},{"name":"amidated L-serine","type":"exact"},{"name":"serinamide","type":"exact"}],"termid":"MOD:00105"}


id: MONDO:0013036
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Zechi-Ceide syndrome","secondary_identifiers":["Orphanet:217017","OMIM:612916","MESH:C567865","GARD:10582","MEDGEN:416693","UMLS:C2752047"],"synonyms":[{"name":"Zechi Ceide syndrome","type":"related"},{"name":"Zechi-Ceide syndrome","type":"exact"},{"name":"occipital atretic cephalocele, unusual facies and large feet","type":"related"},{"name":"occipital atretic cephalocele, unusual facies, and large feet","type":"related"},{"name":"occipital atretic cephalocele-unusual facies-large feet syndrome","type":"exact"}],"termid":"MONDO:0013036","xrefs":{"Monarch":{"xref_id":"0013036"}}}


id: MONDO:0011835
data:
  {"annotated_genes":["SJAG_02658"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88246],"is_not":false,"summary":null,"term":"MONDO:0011835"}]},"cv_name":"mondo","definition":"A rare mitochondrial disease characterized by adult onset of the triad of sensory ataxic neuropathy, dysarthria, and ophthalmoparesis. Additional signs and symptoms are highly variable and include myopathy, seizures, and hearing loss, among others. Brain imaging may show cerebellar white matter abnormalities and/or bilateral thalamic lesions.","definition_xrefs":["Orphanet:70595"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"progressive myoclonus epilepsy","termid":"MONDO:0020074"},{"relation_name":"excluded_subClassOf","term_name":"metabolic epilepsy","termid":"MONDO:0100033"},{"relation_name":"is_a","term_name":"congenital nervous system disorder","termid":"MONDO:0002320"},{"relation_name":"is_a","term_name":"inborn mitochondrial myopathy","termid":"MONDO:0009637"},{"relation_name":"is_a","term_name":"ataxia neuropathy spectrum","termid":"MONDO:0016798"},{"relation_name":"is_a","term_name":"hereditary peripheral neuropathy","termid":"MONDO:0020127"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02658":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"},{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0004069"}],"interesting_parent_ids":["MONDO:0005336","MONDO:0005244","MONDO:0005066","MONDO:0002320","MONDO:0004069"],"is_obsolete":false,"name":"sensory ataxic neuropathy, dysarthria, and ophthalmoparesis","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["Orphanet:402082","UMLS:C1843851","DOID:0111276","OMIM:607459","GARD:9998","MEDGEN:375302","OMIM:613832"],"synonyms":[{"name":"EPM5","type":"exact"},{"name":"PME type 5","type":"exact"},{"name":"PRICKLE2 progressive myoclonic epilepsy","type":"exact"},{"name":"SANDO","type":"exact"},{"name":"epilepsy, progressive myoclonic, 5","type":"related"},{"name":"epilepsy, progressive myoclonic, 5, formerly","type":"related"},{"name":"epilepsy, progressive myoclonic, type 5","type":"exact"},{"name":"epilepsy, progressive myoclonic, with sensory ataxic neuropathy","type":"related"},{"name":"mitochondrial recessive ataxia syndrome (includes SANDO and SCAE)","type":"exact"},{"name":"progressive myoclonic epilepsy caused by mutation in PRICKLE2","type":"exact"},{"name":"progressive myoclonus epilepsy type 5","type":"exact"},{"name":"sensory ataxic neuropathy with mitochondrial DNA deletions, autosomal recessive","type":"related"},{"name":"sensory ataxic neuropathy, dysarthria, and ophthalmoparesis","type":"exact"},{"name":"sensory ataxic neuropathy-dysarthria-ophthalmoparesis syndrome","type":"related"},{"name":"spinocerebellar ataxia with epilepsy","type":"related"}],"termid":"MONDO:0011835","terms_by_termid":{"MONDO:0011835":null},"xrefs":{"Monarch":{"xref_id":"0011835"}}}


id: GO:0075116
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the symbiont activates, maintains or increases the frequency, rate or extent of host transmembrane receptor-mediated cAMP signal transduction. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete induction by symbiont of host transmembrane receptor-mediated cAMP signal transduction (obsolete GO:0075116)","synonyms":[{"name":"activation by symbiont of host transmembrane receptor-mediated cAMP signal transduction","type":"narrow"},{"name":"positive regulation by symbiont of host transmembrane receptor-mediated cAMP signal transduction","type":"exact"},{"name":"positive regulation by symbiont of host transmembrane receptor-mediated cAMP signaling","type":"exact"},{"name":"promotion by symbiont of host transmembrane receptor-mediated cAMP signal transduction","type":"exact"},{"name":"stimulation by symbiont of host transmembrane receptor-mediated cAMP signal transduction","type":"narrow"},{"name":"upregulation by symbiont of host transmembrane receptor-mediated cAMP signal transduction","type":"exact"}],"termid":"GO:0075116"}


id: PBO:0079936
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"upstream transcription factor 1 pseudogene 1","termid":"PBO:0079936"}


id: GO:0047547
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (2S,3S)-2-methylcitrate = cis-2-methylaconitate + H2O.","definition_xrefs":["EC:4.2.1.79","RHEA:17725"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydro-lyase activity","termid":"GO:0016836"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"2-methylcitrate dehydratase activity","secondary_identifiers":["KEGG_REACTION:R04424","MetaCyc:2-METHYLCITRATE-DEHYDRATASE-RXN"],"synonyms":[{"name":"(2S,3S)-2-hydroxybutane-1,2,3-tricarboxylate hydro-lyase [(Z)-but-2-ene-1,2,3-tricarboxylate-forming]","type":"related"},{"name":"2-hydroxybutane-1,2,3-tricarboxylate hydro-lyase activity","type":"related"},{"name":"2-methylcitrate hydro-lyase activity","type":"related"},{"name":"prpD","type":"related"}],"termid":"GO:0047547"}


id: MONDO:0011797
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Infantile-onset ascending hereditary spastic paralysis (IAHSP) is a very rare motor neuron disease characterized by severe spasticity of the lower limbs in early life, progression of spasticity to the upper limbs in late childhood, and dysarthria.","definition_xrefs":["Orphanet:293168"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ALS2-related motor neuron disease","termid":"MONDO:0100227"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"infantile-onset ascending hereditary spastic paralysis","secondary_identifiers":["OMIM:607225","MESH:C537217","SCTID:703543005","UMLS:C2931441","GARD:4914","MEDGEN:419413","ICD9:343.8"],"synonyms":[{"name":"IAHSP","type":"exact"},{"name":"spastic paralysis, infantile onset ascending","type":"related"},{"name":"spastic paralysis, infantile-onset ascending","type":"related"}],"termid":"MONDO:0011797","xrefs":{"Monarch":{"xref_id":"0011797"}}}


id: GO:0033425
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A triplet codon-amino acid adaptor activity that recognizes a CAU codon.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"triplet codon-amino acid adaptor activity","termid":"GO:0030533"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0060090"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0003723","GO:0060090"],"is_obsolete":false,"name":"CAU codon-amino acid adaptor activity","synonyms":[{"name":"CAT codon-amino acid adaptor activity","type":"exact"},{"name":"histidine tRNA","type":"related"}],"termid":"GO:0033425"}


id: GO:0097488
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding a multivesicular body internal vesicle.","definition_xrefs":["GOC:pde","PMID:21183070"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic vesicle membrane","termid":"GO:0030659"},{"relation_name":"is_a","term_name":"bounding membrane of organelle","termid":"GO:0098588"},{"relation_name":"part_of","term_name":"multivesicular body, internal vesicle","termid":"GO:0097487"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005768"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0031410","GO:0005737","GO:0005768"],"is_obsolete":false,"name":"multivesicular body, internal vesicle membrane","termid":"GO:0097488"}


id: MONDO:0001993
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A carcinoma that arises from glandular epithelial cells of the seminal vesicle","direct_ancestors":[{"relation_name":"is_a","term_name":"seminal vesicle tumor","termid":"MONDO:0002790"},{"relation_name":"is_a","term_name":"adenocarcinoma","termid":"MONDO:0004970"},{"relation_name":"is_a","term_name":"testicular cancer","termid":"MONDO:0005447"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"seminal vesicle adenocarcinoma","secondary_identifiers":["NCIT:C39906","MEDGEN:311271","UMLS:C1519233","DOID:14545"],"synonyms":[{"name":"seminal vesicle adenocarcinoma","type":"exact"}],"termid":"MONDO:0001993","xrefs":{"Monarch":{"xref_id":"0001993"}}}


id: PBO:0070572
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 38","termid":"PBO:0070572"}


id: PBO:0090231
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator complex subunit Med9","termid":"PBO:0090231"}


id: GO:1902602
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of aluminium ions across a membrane.","definition_xrefs":["GOC:pr","GOC:TermGenie","GO_REF:0000069"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inorganic ion transmembrane transport","termid":"GO:0098660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"aluminum ion transmembrane transport","synonyms":[{"name":"aluminium ion transmembrane transport","type":"exact"},{"name":"aluminium transmembrane transport","type":"broad"},{"name":"aluminum transmembrane transport","type":"broad"}],"termid":"GO:1902602"}


id: PBO:0016940
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces specific protein Mug74","termid":"PBO:0016940"}


id: PBO:0090711
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nicotinamidase Pnc1","termid":"PBO:0090711"}


id: FYPO:0000782
data:
  {"alleles_by_uniquename":{"SJAG_01745:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01745","name":"lem2delta","uniquename":"SJAG_01745:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[121257],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0003657"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a protein is observed in a particular location where it is not normally found.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mislocalized protein","termid":"FYPO:0003452"},{"relation_name":"is_a","term_name":"abnormal cellular physical quality phenotype during vegetative growth","termid":"FYPO:0004639"},{"relation_name":"output_of","term_name":"abnormal protein localization to nucleus during vegetative growth","termid":"FYPO:0001129"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01050":null,"SJAG_01745":null},"genotype_count":1,"genotypes_by_uniquename":{"lem2delta":{"display_name":"lem2delta","display_uniquename":"lem2delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01745:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0000138","FYPO:0001320"],"is_obsolete":false,"name":"mislocalized protein during vegetative growth","references_by_uniquename":{"PMID:32109380":null},"single_locus_annotated_genes":["SJAG_01745"],"single_locus_genotype_uniquenames":["lem2delta"],"synonyms":[{"name":"mislocalised protein during vegetative growth","type":"exact"},{"name":"mislocalized protein during mitotic cell cycle","type":"related"}],"termid":"FYPO:0000782","terms_by_termid":{"FYECO:0000137":null,"FYPO:0003657":null,"FYPO_EXT:0000001":null}}


id: PBO:0040491
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ataxin 8","termid":"PBO:0040491"}


id: GO:0090141
data:
  {"annotated_genes":["SJAG_01212"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[110827],"is_not":false,"summary":null,"term":"GO:0090141"}]},"cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of mitochondrial fission. Mitochondrial fission is the division of a mitochondrion within a cell to form two or more separate mitochondrial compartments.","definition_xrefs":["GOC:tb","GOC:dph","GOC:ascb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of organelle organization","termid":"GO:0010638"},{"relation_name":"is_a","term_name":"positive regulation of developmental process","termid":"GO:0051094"},{"relation_name":"is_a","term_name":"regulation of mitochondrial fission","termid":"GO:0090140"},{"relation_name":"positively_regulates","term_name":"mitochondrial fission","termid":"GO:0000266"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01212":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007005"},{"rel_name":"positively_regulates","termid":"GO:0007005"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007005","GO:0008150"],"is_obsolete":false,"name":"positive regulation of mitochondrial fission","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"positive regulation of mitochondrial division","type":"exact"}],"termid":"GO:0090141","terms_by_termid":{"GO:0090141":null}}


id: FYPO:0004587
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which a cell population does not grow in a medium containing urea as the nitrogen source.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished vegetative cell population growth","termid":"FYPO:0001575"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0000139","FYPO:0005447","FYPO:0001985","FYPO:0002058","FYPO:0002057","FYPO:0002060"],"is_obsolete":false,"name":"abolished cell population growth on urea nitrogen source","synonyms":[{"name":"abolished urea utilization","type":"related"},{"name":"abolished vegetative cell population growth on urea nitrogen source","type":"exact"},{"name":"cell population growth on urea nitrogen source abolished","type":"exact"}],"termid":"FYPO:0004587"}


