# terms

id: MONDO:0004400
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A type A thymoma which is characterized by an aggressive clinical course (capsular invasion, infiltration of the surrounding tissues) and can metastasize.","definition_xrefs":["NCIT:C7999"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thymoma type A","termid":"MONDO:0002588"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"malignant type A thymoma","secondary_identifiers":["DOID:7927","ICDO:8581/3","UMLS:C0279707","MEDGEN:79027"],"synonyms":[{"name":"malignant type A thymoma","type":"exact"},{"name":"thymoma, medullary, malignant","type":"exact"}],"termid":"MONDO:0004400","xrefs":{"Monarch":{"xref_id":"0004400"}}}


id: PBO:0116640
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARF interacting protein 1","termid":"PBO:0116640"}


id: MONDO:0957267
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with intracranial hemorrhage, seizures, and spasticity","secondary_identifiers":["MEDGEN:1841145","OMIM:620371","UMLS:C5830509"],"termid":"MONDO:0957267","xrefs":{"Monarch":{"xref_id":"0957267"}}}


id: GO:0071494
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-C radiation stimulus. UV-C radiation (UV-C light) spans the wavelengths 100 to 280 nm.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to UV-C","termid":"GO:0010225"},{"relation_name":"is_a","term_name":"cellular response to UV","termid":"GO:0034644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to UV-C","synonyms":[{"name":"cellular response to UV-C light stimulus","type":"exact"},{"name":"cellular response to UV-C radiation stimulus","type":"exact"},{"name":"cellular response to UVC light stimulus","type":"exact"},{"name":"cellular response to UVC radiation stimulus","type":"exact"},{"name":"cellular response to germicidal ultraviolet light stimulus","type":"exact"},{"name":"cellular response to germicidal ultraviolet radiation stimulus","type":"exact"},{"name":"cellular response to shortwave ultraviolet light stimulus","type":"exact"},{"name":"cellular response to shortwave ultraviolet radiation stimulus","type":"exact"}],"termid":"GO:0071494"}


id: PBO:0068636
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 16, pseudogene","termid":"PBO:0068636"}


id: GO:0033645
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A collection of membranous structures involved in transport within the host cell. The main components of the endomembrane system are endoplasmic reticulum, Golgi bodies, vesicles, cell membrane and nuclear envelope. Members of the endomembrane system pass materials through each other or though the use of vesicles. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell membrane","termid":"GO:0033644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell endomembrane system","termid":"GO:0033645"}


id: PBO:0041154
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"basic transcription factor 3 pseudogene 9","termid":"PBO:0041154"}


id: GO:0007116
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the formation and growth of cell buds.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell division","termid":"GO:0051302"},{"relation_name":"is_a","term_name":"regulation of asexual reproduction","termid":"GO:1903664"},{"relation_name":"regulates","term_name":"cell budding","termid":"GO:0007114"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cell budding","synonyms":[{"name":"regulation of budding","type":"broad"}],"termid":"GO:0007116"}


id: PBO:0088962
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome small subunit biogenesis protein, BUD22 family","termid":"PBO:0088962"}


id: GO:0034811
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: benzo(a)pyrene + O2 = benzo(a)pyrene-cis-9,10-dihydrodiol.","definition_xrefs":["UM-BBD_reactionID:r1132"],"gene_count":0,"genotype_count":0,"name":"obsolete benzo(a)pyrene 9,10-dioxygenase activity (obsolete GO:0034811)","termid":"GO:0034811"}


id: MONDO:1010466
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Patent ductus arteriosus that occurs in domestic cat.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"patent ductus arteriosus, non-human animal","termid":"MONDO:1010017"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"patent ductus arteriosus, domestic cat","secondary_identifiers":["OMIA:000779-9685"],"termid":"MONDO:1010466","xrefs":{"Monarch":{"xref_id":"1010466"}}}


id: MONDO:1010857
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Krabbe disease that occurs in sheep.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Krabbe disease, non-human animal","termid":"MONDO:1010170"},{"relation_name":"is_a","term_name":"leukodystrophy, sheep","termid":"MONDO:1011006"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Krabbe disease, sheep","secondary_identifiers":["OMIA:000578-9940"],"termid":"MONDO:1010857","xrefs":{"Monarch":{"xref_id":"1010857"}}}


id: FYPO:0005293
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the binding of one protein to another occurs to a lower extent than normal during a cellular response to methyl methanesulfonate. The relevant proteins may include the one encoded by the mutated gene, or may both be encoded by different genes.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein-protein interaction","termid":"FYPO:0001645"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000702"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000702","FYPO:0000652","FYPO:0001985","FYPO:0000707"],"is_obsolete":false,"name":"decreased protein-protein interaction during cellular response to methyl methanesulfonate","synonyms":[{"name":"decreased protein binding during cellular response to methyl methanesulfonate","type":"exact"},{"name":"decreased protein-protein interaction during cellular response to MMS","type":"exact"},{"name":"decreased protein-protein interaction in response to methyl methanesulfonate","type":"related"},{"name":"reduced protein-protein interaction during cellular response to methyl methanesulfonate","type":"exact"}],"termid":"FYPO:0005293"}


id: MOD:01446
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an N-formyl-Lmethionine residue to N-(dihydroxymethyl)-L-methionine.","definition_xrefs":["PubMed:9159480","PubMed:12595263","RESID:AA0493"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"N-formyl-L-methionine residue","termid":"MOD:00030"},{"relation_name":"is_a","term_name":"modified N-formyl-L-methionine residue","termid":"MOD:01450"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"N-(dihydroxymethyl)-L-methionine (fMet)","synonyms":[{"name":"(2S)-2-[(dihydroxymethyl)amino]-4-(methylsulfanyl)butanoic acid","type":"exact"},{"name":"N-(dihydroxymethyl)-L-methionine","type":"exact"},{"name":"N-formyl-L-methionine hydrate","type":"exact"},{"name":"N-orthoformylmethionine","type":"exact"}],"termid":"MOD:01446"}


id: PBO:0055821
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leupaxin","termid":"PBO:0055821"}


id: GO:0022810
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the active transport of a solute across a membrane by a mechanism involving conformational change, where energy for active transport is derived from membrane potential if the solute is charged.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"uniporter activity","termid":"GO:0015292"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"membrane potential driven uniporter activity","synonyms":[{"name":"porter","type":"broad"}],"termid":"GO:0022810"}


id: GO:0009710
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of tropane alkaloids, compounds containing the 8-methyl-8-azabicyclo(3.2.1)octane ring system.","definition_xrefs":["ISBN:0198506732","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alkaloid biosynthetic process","termid":"GO:0009821"},{"relation_name":"is_a","term_name":"tropane alkaloid metabolic process","termid":"GO:0046448"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"tropane alkaloid biosynthetic process","synonyms":[{"name":"tropane alkaloid anabolism","type":"exact"},{"name":"tropane alkaloid biosynthesis","type":"exact"},{"name":"tropane alkaloid formation","type":"exact"},{"name":"tropane alkaloid synthesis","type":"exact"}],"termid":"GO:0009710"}


id: PBO:0110826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription factor, glucose starvation sensing, Rst2","termid":"PBO:0110826"}


id: MONDO:0000679
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An agnosia that is a loss of the ability to perceive facial expression, body language and intonation, rendering them unable to non-verbally perceive people's emotions and limiting that aspect of social interaction.","definition_xrefs":["DOID:0060149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"agnosia","termid":"MONDO:0005638"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"social emotional agnosia","synonyms":[{"name":"expressive agnosia","type":"exact"}],"termid":"MONDO:0000679","xrefs":{"Monarch":{"xref_id":"0000679"}}}


id: FYPO:0000212
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular response phenotype observed in the vegetative growth phase of the life cycle in which the cellular response to heat is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular response to stress during vegetative growth","termid":"FYPO:0001341"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0000298","FYPO:0005447"],"is_obsolete":false,"name":"abnormal cellular response to heat","synonyms":[{"name":"abnormal cellular response to heat during mitotic cell cycle","type":"related"},{"name":"abnormal cellular response to heat during vegetative growth","type":"exact"}],"termid":"FYPO:0000212"}


id: MONDO:0044998
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A disease or disorder that involves the carpal region.","definition_xrefs":["MONDO:patterns/location"],"gene_count":0,"genotype_count":0,"name":"obsolete carpal region disorder (obsolete MONDO:0044998)","secondary_identifiers":["SCTID:128130001"],"synonyms":[{"name":"carpal region disease or disorder","type":"exact"},{"name":"disease of carpal region","type":"exact"},{"name":"disease or disorder of carpal region","type":"exact"},{"name":"disorder of carpal region","type":"exact"},{"name":"disorder of wrist region","type":"exact"},{"name":"wrist region disease","type":"exact"}],"termid":"MONDO:0044998","xrefs":{"Monarch":{"xref_id":"0044998"}}}


id: FYPO:0001414
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to sulfide (S2-). Cells stop growing (and may die) at a concentration of sulfide ions that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002683"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0002683","FYPO:0000139","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to sulfide","synonyms":[{"name":"hypersensitive to sulfide","type":"exact"},{"name":"sensitive to sulfide during mitotic cell cycle","type":"related"},{"name":"sensitive to sulfide during vegetative growth","type":"exact"},{"name":"sensitive to sulfide ions","type":"exact"},{"name":"sensitive to sulphide","type":"exact"}],"termid":"FYPO:0001414"}


id: MONDO:0005953
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An infiltrating adenocarcinoma characterized by the presence of desmoplastic stromal reaction.","definition_xrefs":["NCIT:C2928"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adenocarcinoma","termid":"MONDO:0004970"},{"relation_name":"is_a","term_name":"connective tissue neoplasm","termid":"MONDO:0021581"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"scirrhous adenocarcinoma","secondary_identifiers":["MESH:D002293","DOID:4024","EFO:0007478","ICDO:8141/3","MEDGEN:2873","UMLS:C0007135"],"synonyms":[{"name":"FIBROADENOCARCINOMA, malignant","type":"exact"},{"name":"adenocarcinoma with productive fibrosis","type":"exact"},{"name":"fibrocarcinoma","type":"exact"},{"name":"scirrhous adenocarcinoma","type":"exact"},{"name":"scirrhous adenocarcinoma (morphologic abnormality)","type":"exact"},{"name":"scirrhous carcinoma","type":"exact"}],"termid":"MONDO:0005953","xrefs":{"Monarch":{"xref_id":"0005953"}}}


id: PBO:0028754
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-galactomannan_absent_from_cell_wall","termid":"PBO:0028754"}


id: PBO:0062459
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily E member 140 pseudogene","termid":"PBO:0062459"}


id: PBO:0002061
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADH dehydrogenase (predicted)","termid":"PBO:0002061"}


id: PBO:0007025
data:
  {"annotation_feature_type":"gene","cv_name":"DNA_binding_specificity","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"binds PLD site 5'-AGTTTACGTAATCT-3'","termid":"PBO:0007025"}


id: GO:1900975
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of tatiopterin biosynthetic process.","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of biosynthetic process","termid":"GO:0009890"},{"relation_name":"is_a","term_name":"regulation of tatiopterin biosynthetic process","termid":"GO:1900974"},{"relation_name":"is_a","term_name":"negative regulation of tatiopterin metabolic process","termid":"GO:1900978"},{"relation_name":"negatively_regulates","term_name":"tatiopterin biosynthetic process","termid":"GO:1900870"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0042559"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0042559"}],"interesting_parent_ids":["GO:0044281","GO:0042559","GO:0008150"],"is_obsolete":false,"name":"negative regulation of tatiopterin biosynthetic process","synonyms":[{"name":"down regulation of tatiopterin anabolism","type":"exact"},{"name":"down regulation of tatiopterin biosynthesis","type":"exact"},{"name":"down regulation of tatiopterin biosynthetic process","type":"exact"},{"name":"down regulation of tatiopterin formation","type":"exact"},{"name":"down regulation of tatiopterin synthesis","type":"exact"},{"name":"down-regulation of tatiopterin anabolism","type":"exact"},{"name":"down-regulation of tatiopterin biosynthesis","type":"exact"},{"name":"down-regulation of tatiopterin biosynthetic process","type":"exact"},{"name":"down-regulation of tatiopterin formation","type":"exact"},{"name":"down-regulation of tatiopterin synthesis","type":"exact"},{"name":"downregulation of tatiopterin anabolism","type":"exact"},{"name":"downregulation of tatiopterin biosynthesis","type":"exact"},{"name":"downregulation of tatiopterin biosynthetic process","type":"exact"},{"name":"downregulation of tatiopterin formation","type":"exact"},{"name":"downregulation of tatiopterin synthesis","type":"exact"},{"name":"inhibition of tatiopterin anabolism","type":"exact"},{"name":"inhibition of tatiopterin biosynthesis","type":"exact"},{"name":"inhibition of tatiopterin biosynthetic process","type":"narrow"},{"name":"inhibition of tatiopterin formation","type":"exact"},{"name":"inhibition of tatiopterin synthesis","type":"exact"},{"name":"negative regulation of tatiopterin anabolism","type":"exact"},{"name":"negative regulation of tatiopterin biosynthesis","type":"exact"},{"name":"negative regulation of tatiopterin formation","type":"exact"},{"name":"negative regulation of tatiopterin synthesis","type":"exact"}],"termid":"GO:1900975"}


id: PATO:0000835
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000835 auditory acuity value (obsolete PATO:0000835)","termid":"PATO:0000835"}


id: MONDO:0013996
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Focal facial dermal dysplasia type II (FFDD2) is a focal facial dermal dysplasia (FFDD), characterized by congenital bitemporal scar-like depressions and other facial and organ abnormalities.","definition_xrefs":["Orphanet:398173"],"direct_ancestors":[{"relation_name":"is_a","term_name":"focal facial dermal dysplasia type III","termid":"MONDO:0009203"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"focal facial dermal dysplasia type II","secondary_identifiers":["GARD:17649","OMIM:614973","UMLS:C3554245","NORD:1704","MEDGEN:767159"],"synonyms":[{"name":"Brauer-Setleis syndrome","type":"related"},{"name":"FFDD type II","type":"exact"},{"name":"FFDD2","type":"exact"},{"name":"Setleis Syndrome","type":"exact"},{"name":"focal facial dermal dysplasia 2, Brauer-Setleis type","type":"exact"}],"termid":"MONDO:0013996","xrefs":{"Monarch":{"xref_id":"0013996"}}}


id: MONDO:1012634
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any difference of sexual differentiation that occurs in domestic cats and is characterized by the presence of testicular tissue in the gonads with a female karyotype (XX) and absence of the SRY gene.","definition_xrefs":["OMIA:000901-9685"],"direct_ancestors":[{"relation_name":"is_a","term_name":"difference of sexual differentiation, non-human animal","termid":"MONDO:0700105"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"XX difference of sexual development, domestic cat","termid":"MONDO:1012634","xrefs":{"Monarch":{"xref_id":"1012634"}}}


id: MONDO:0020290
data:
  {"annotated_genes":["SJAG_02730"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88468],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013769"}]},"cv_name":"mondo","definition":"A spectrum of septal defects involving the atrial septum; ventricular septum; and the atrioventricular valves (tricuspid valve; bicuspid valve). These defects are due to incomplete growth and fusion of the endocardial cushions which are important in the formation of two atrioventricular canals, site of future atrioventricular valves.","definition_xrefs":["MESH:D004694"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heart septal defect","termid":"MONDO:0002078"},{"relation_name":"is_a","term_name":"cardiogenetic disease","termid":"MONDO:0100547"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02730":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"familial atrioventricular septal defect","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["ICD9:745.60","SCTID:15459006","Orphanet:98722","NORD:821","ICD9:745.6","DOID:0050651","NCIT:C101029","OMIMPS:606215","ICD9:745.69","GARD:802"],"synonyms":[{"name":"AV septal defect","type":"narrow"},{"name":"AVCD","type":"narrow"},{"name":"AVSD","type":"narrow"},{"name":"Atrioventricular Septal Defect","type":"exact"},{"name":"ECD","type":"narrow"},{"name":"atrioventricular canal defect","type":"narrow"},{"name":"atrioventricular septal defect","type":"narrow"},{"name":"common AV canal","type":"narrow"},{"name":"common atrioventricular canal","type":"narrow"},{"name":"endocardial cushion defect","type":"narrow"}],"termid":"MONDO:0020290","terms_by_termid":{"MONDO:0013769":null},"xrefs":{"Monarch":{"xref_id":"0020290"}}}


id: GO:1900116
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any negative regulation of signal transduction that takes place in extracellular region.","definition_xrefs":["GOC:signaling","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of signal transduction","termid":"GO:0009968"},{"relation_name":"is_a","term_name":"extracellular regulation of signal transduction","termid":"GO:1900115"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"extracellular negative regulation of signal transduction","synonyms":[{"name":"down regulation of signal transduction in extracellular region","type":"exact"},{"name":"down-regulation of signal transduction in extracellular region","type":"exact"},{"name":"downregulation of signal transduction in extracellular region","type":"exact"},{"name":"extracellular inhibition of signaling pathway","type":"narrow"},{"name":"inhibition of signal transduction in extracellular region","type":"narrow"},{"name":"negative regulation of signaling pathway in extracellular region","type":"exact"},{"name":"negative regulation of signalling pathway in extracellular region","type":"exact"}],"termid":"GO:1900116"}


id: GO:0050142
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 6 reduced flavodoxin + 6 H+ + N2 + n ATP = 6 oxidized flavodoxin + 2 NH3 + n ADP + n phosphate.","definition_xrefs":["EC:1.19.6.1","MetaCyc:NITROGENASE-FLAVODOXIN-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on reduced flavodoxin as donor, dinitrogen as acceptor","termid":"GO:0016738"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"nitrogenase (flavodoxin) activity","secondary_identifiers":["RHEA:15645"],"synonyms":[{"name":"reduced flavodoxin:dinitrogen oxidoreductase (ATP-hydrolysing)","type":"related"}],"termid":"GO:0050142"}


id: GO:1902442
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of ripoptosome assembly involved in a necroptotic process.","definition_xrefs":["GOC:dph","GOC:mtg_apoptosis","GOC:TermGenie","PMID:21052097"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of protein-containing complex assembly","termid":"GO:0043254"},{"relation_name":"regulates","term_name":"ripoptosome assembly involved in necroptotic process","termid":"GO:1901026"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"regulates","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0044085","GO:0065003","GO:0008150"],"is_obsolete":false,"name":"regulation of ripoptosome assembly involved in necroptotic process","synonyms":[{"name":"regulation of ripoptosome assembly involved in necroptosis","type":"narrow"}],"termid":"GO:1902442"}


id: PBO:0079366
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin alpha like 3","termid":"PBO:0079366"}


id: MONDO:0010014
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Craniometadiaphyseal dysplasia, wormian bone type is an extremely rare craniotubular bone dysplasia syndrome described in fewer than 10 patients to date. Clinical manifestations include macrocephaly, frontal bossing, malar hypoplasia, prominent mandible and dental hypoplasia. Other skeletal anomalies include abnormal bone modeling in tubular bones, multiple wormian bones and deformities of chest, pelvis and elbows. An increased risk of fractures is noted.","definition_xrefs":["Orphanet:85184"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete primary bone dysplasia with increased bone density (obsolete MONDO:0019703)","termid":"MONDO:0019703"},{"relation_name":"is_a","term_name":"skeletal dysplasia","termid":"MONDO:0018230"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"craniometadiaphyseal dysplasia, wormian bone type","secondary_identifiers":["OMIM:269300","SCTID:278833002","icd11.foundation:1055011248","MEDGEN:1382152","GARD:16737","UMLS:C4510809"],"synonyms":[{"name":"CRANIOMETADIAPHYSEAL dysplasia","type":"related"},{"name":"CRMDD","type":"related"},{"name":"Schwartz-Lelek syndrome","type":"exact"}],"termid":"MONDO:0010014","xrefs":{"Monarch":{"xref_id":"0010014"}}}


id: MONDO:0018489
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autoimmune encephalopathy with parasomnia and obstructive sleep apnea is a rare neurologic disorder characterized by a unique non-REM and REM parasomnia with sleep breathing dysfunction, gait instability and repetitive episodes of respiratory insufficiency, as well as autoantibodies against IgLON5. Patients may present stridor, chorea, limb ataxia, abnormal ocular movements, and bulbar symptoms (i.e. dysphagia, dysarthria, episodic central hypoventilation) with normal brain MRI. Excessive day sleepiness and cognitive deterioration have also been reported.","definition_xrefs":["Orphanet:420789"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autoimmune disorder of central nervous system","termid":"MONDO:0000568"},{"relation_name":"is_a","term_name":"sleep-wake disorder","termid":"MONDO:0003406"},{"relation_name":"is_a","term_name":"brain disorder","termid":"MONDO:0005560"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"autoimmune encephalopathy with parasomnia and obstructive sleep apnea","secondary_identifiers":["UMLS:C4707562","GARD:21749","MEDGEN:1644256","SCTID:765751002"],"synonyms":[{"name":"anti-IgLON5 disease","type":"exact"},{"name":"anti-IgLON5 syndrome","type":"exact"}],"termid":"MONDO:0018489","xrefs":{"Monarch":{"xref_id":"0018489"}}}


id: GO:0003750
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:krc"],"gene_count":0,"genotype_count":0,"name":"obsolete cell cycle regulator (obsolete GO:0003750)","synonyms":[{"name":"cell cycle regulator","type":"exact"}],"termid":"GO:0003750"}


id: MONDO:0006387
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A diffuse large B-cell lymphoma that is localized to the lungs at the time of presentation. Signs and symptoms include cough, dyspnea, and hemoptysis.","definition_xrefs":["NCIT:C45605"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune system cancer","termid":"MONDO:0000621"},{"relation_name":"is_a","term_name":"diffuse large B-cell lymphoma","termid":"MONDO:0018905"},{"relation_name":"is_a","term_name":"lung non-Hodgkin lymphoma","termid":"MONDO:0020644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"primary pulmonary diffuse large B-cell lymphoma","secondary_identifiers":["UMLS:C2200138","EFO:1000495","MEDGEN:1789549"],"synonyms":[{"name":"diffuse large B-cell lymphoma of lung","type":"exact"},{"name":"high grade MALT lymphoma of the lung","type":"exact"},{"name":"lung diffuse large B-cell lymphoma","type":"exact"},{"name":"primary pulmonary diffuse large B-cell lymphoma","type":"exact"},{"name":"pulmonary diffuse large B-cell lymphoma","type":"exact"}],"termid":"MONDO:0006387","xrefs":{"Monarch":{"xref_id":"0006387"}}}


id: PBO:0057671
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1262","termid":"PBO:0057671"}


id: PBO:0048093
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferritin light chain pseudogene 14","termid":"PBO:0048093"}


id: MONDO:0000457
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A molecular subtype of glioblastoma characterized by lack of p53 mutations, chromosome 7 amplifications or deletions, and high levels of EGFR amplification.","definition_xrefs":["NCIT:C111694"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glioblastoma","termid":"MONDO:0018177"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"classical glioblastoma","secondary_identifiers":["DOID:0050803","UMLS:C3827253","MEDGEN:820001"],"synonyms":[{"name":"classical glioblastoma","type":"exact"},{"name":"glioblastoma classical subtype","type":"related"}],"termid":"MONDO:0000457","xrefs":{"Monarch":{"xref_id":"0000457"}}}


id: GO:1903665
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of asexual reproduction.","definition_xrefs":["PMID:24390142","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of asexual reproduction","termid":"GO:1903664"},{"relation_name":"is_a","term_name":"negative regulation of reproductive process","termid":"GO:2000242"},{"relation_name":"negatively_regulates","term_name":"asexual reproduction","termid":"GO:0019954"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of asexual reproduction","synonyms":[{"name":"down regulation of asexual reproduction","type":"exact"},{"name":"down-regulation of asexual reproduction","type":"exact"},{"name":"downregulation of asexual reproduction","type":"exact"},{"name":"inhibition of asexual reproduction","type":"narrow"}],"termid":"GO:1903665"}


id: MONDO:1010014
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Essential hypertension that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cardiovascular disorder, non-human animal","termid":"MONDO:1011306"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"essential hypertension, non-human animal","secondary_identifiers":["OMIA:000510"],"termid":"MONDO:1010014","xrefs":{"Monarch":{"xref_id":"1010014"}}}


id: GO:0045031
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with ATP and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled purinergic nucleotide receptor activity","termid":"GO:0045028"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"G protein-coupled ATP receptor activity","synonyms":[{"name":"ATP-activated adenosine receptor activity","type":"related"},{"name":"ATP-activated nucleotide receptor activity","type":"broad"}],"termid":"GO:0045031"}


id: GO:1905897
data:
  {"annotated_genes":["SJAG_01528","SJAG_02244"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[79311,79834],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904293"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of response to endoplasmic reticulum stress.","definition_xrefs":["GOC:aruk","GOC:TermGenie","GO_REF:0000058","GOC:bc","PMID:21803450"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular response to stress","termid":"GO:0080135"},{"relation_name":"regulates","term_name":"response to endoplasmic reticulum stress","termid":"GO:0034976"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01528":null,"SJAG_02244":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of response to endoplasmic reticulum stress","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"regulation of ER stress response","type":"exact"},{"name":"regulation of cellular response to endoplasmic reticulum stress","type":"exact"},{"name":"regulation of response to ER stress","type":"exact"}],"termid":"GO:1905897","terms_by_termid":{"GO:1904293":null}}


id: MONDO:0015018
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal recessive congenital ichthyosis in which the cause of the disease is a mutation in the CASP14 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive congenital ichthyosis","termid":"MONDO:0017265"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"ichthyosis, congenital, autosomal recessive 12","secondary_identifiers":["MEDGEN:934588","OMIM:617320","UMLS:C4310621"],"synonyms":[{"name":"ARCI12","type":"exact"},{"name":"ichthyosis, congenital, autosomal recessive 12","type":"exact"},{"name":"ichthyosis, congenital, autosomal recessive 12; ARCI12","type":"exact"},{"name":"ichthyosis, congenital, autosomal recessive type 12","type":"exact"}],"termid":"MONDO:0015018","xrefs":{"Monarch":{"xref_id":"0015018"}}}


id: MONDO:0030639
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Teebi hypertelorism syndrome","secondary_identifiers":["OMIMPS:145420","UMLS:C0796179","DOID:0081073","MEDGEN:208673"],"termid":"MONDO:0030639","xrefs":{"Monarch":{"xref_id":"0030639"}}}


id: GO:0097572
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"One of the two nuclei found in Giardia species (trophozoite stage). It is located on the right side of the cell when viewed from the dorsal side.","definition_xrefs":["ISBN:0-444-81258-X","GOC:giardia"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleus","termid":"GO:0005634"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005575","GO:0005634"],"is_obsolete":false,"name":"right nucleus","termid":"GO:0097572"}


id: MONDO:0003844
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare benign adipose tissue neoplasm of the central nervous system frequently found in midline locations such as the corpus callosum, the quadrigeminal plate, the hypothalamus, the spinal canal or the cauda equina. Some contain Schwann cells, bone, cartilage or hamartomatous blood vessels.","definition_xrefs":["NCIT:C5451"],"direct_ancestors":[{"relation_name":"is_a","term_name":"central nervous system organ benign neoplasm","termid":"MONDO:0000628"},{"relation_name":"is_a","term_name":"lipoma","termid":"MONDO:0005106"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"central nervous system lipoma","secondary_identifiers":["DOID:6293","MEDGEN:272443","UMLS:C1332885"],"synonyms":[{"name":"CNS lipoma","type":"exact"},{"name":"central nervous system lipoma","type":"exact"},{"name":"lipoma of CNS","type":"exact"},{"name":"lipoma of central nervous system","type":"exact"},{"name":"lipoma of the CNS","type":"exact"},{"name":"lipoma of the central nervous system","type":"exact"}],"termid":"MONDO:0003844","xrefs":{"Monarch":{"xref_id":"0003844"}}}


id: PBO:0071000
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 2","termid":"PBO:0071000"}


id: PBO:0085273
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Peroxisomal integral membrane peroxin; involved in the regulation of peroxisomal size, number and distribution; genetic interactions suggest that Pex28p and Pex29p act at steps upstream of those mediated by Pex30p, Pex31p, and Pex32p","termid":"PBO:0085273"}


id: GO:0071659
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of production of IP-10.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of chemokine production","termid":"GO:0032682"},{"relation_name":"is_a","term_name":"regulation of IP-10 production","termid":"GO:0071658"},{"relation_name":"negatively_regulates","term_name":"IP-10 production","termid":"GO:0071612"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"negative regulation of IP-10 production","synonyms":[{"name":"negative regulation of CXCL10 production","type":"exact"},{"name":"negative regulation of chemokine (C-C motif) ligand 10 production","type":"exact"}],"termid":"GO:0071659"}


id: GO:0031580
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that establishes the spatial arrangement of membrane rafts within a cellular membrane.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane raft organization","termid":"GO:0031579"},{"relation_name":"is_a","term_name":"membrane raft localization","termid":"GO:0051665"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0061024","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"membrane raft distribution","synonyms":[{"name":"lipid raft distribution","type":"exact"}],"termid":"GO:0031580"}


id: RO:0002478
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A child nucleus relationship in which the cells are part of a male organism","direct_ancestors":[{"relation_name":"is_a","term_name":"child_nucleus_of","termid":"RO:0002476"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"child_nucleus_of_in_male","termid":"RO:0002478"}


id: GO:0102118
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: gibberellin A4 + S-adenosyl-L-methionine = gibberellin A4 methyl ester + S-adenosyl-L-homocysteine.","definition_xrefs":["GOC:pz","EC:2.1.1.276"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0003674","GO:0016741","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"gibberellin A4 carboxyl methyltransferase activity","secondary_identifiers":["RHEA:36107","MetaCyc:RXN-11359"],"termid":"GO:0102118"}


id: GO:0002552
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of serotonin by a mast cell or group of mast cells.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"serotonin secretion involved in inflammatory response","termid":"GO:0002442"},{"relation_name":"is_a","term_name":"establishment of localization in cell","termid":"GO:0051649"},{"relation_name":"is_a","term_name":"exocytic process","termid":"GO:0140029"},{"relation_name":"part_of","term_name":"mast cell degranulation","termid":"GO:0043303"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0023052","GO:0006810","GO:0016192","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"serotonin secretion by mast cell","synonyms":[{"name":"serotonin release by mast cell","type":"related"}],"termid":"GO:0002552"}


id: PBO:0049011
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G-patch domain and KOW motifs","termid":"PBO:0049011"}


id: GO:2000133
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of tyramine signaling pathway.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of octopamine or tyramine signaling pathway","termid":"GO:2000127"},{"relation_name":"is_a","term_name":"regulation of tyramine signaling pathway","termid":"GO:2000131"},{"relation_name":"positively_regulates","term_name":"tyramine signaling pathway","termid":"GO:0071928"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of tyramine signaling pathway","synonyms":[{"name":"positive regulation of tyramine signalling pathway","type":"exact"}],"termid":"GO:2000133"}


id: GO:0160119
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A programmed cell death process that is induced by intracellular copper accumulation.","definition_xrefs":["PMID:35354936","PMID:35298263"],"direct_ancestors":[{"relation_name":"is_a","term_name":"programmed cell death","termid":"GO:0012501"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cuproptosis","termid":"GO:0160119"}


id: PBO:0068786
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 23, pseudogene","termid":"PBO:0068786"}


id: MONDO:0015707
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete DNA repair defect other than combined T-cell and B-cell immunodeficiencies (obsolete MONDO:0015707)","secondary_identifiers":["icd11.foundation:1362501774","Orphanet:169346"],"termid":"MONDO:0015707","xrefs":{"Monarch":{"xref_id":"0015707"}}}


id: MONDO:0012730
data:
  {"annotated_genes":["SJAG_03145"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86876],"is_not":false,"summary":null,"term":"MONDO:0012730"}]},"cv_name":"mondo","definition":"Any familial thoracic aortic aneurysm and aortic dissection in which the cause of the disease is a mutation in the ACTA2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial thoracic aortic aneurysm and aortic dissection","termid":"MONDO:0019625"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03145":null},"genotype_count":0,"is_obsolete":false,"name":"aortic aneurysm, familial thoracic 6","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:C567085","GARD:15527","MEDGEN:435866","OMIM:611788","UMLS:C2673186"],"synonyms":[{"name":"AAT6","type":"related"},{"name":"aortic aneurysm, familial thoracic 6","type":"exact"},{"name":"ACTA2 familial thoracic aortic aneurysm and aortic dissection","type":"exact"},{"name":"aortic aneurysm, familial thoracic type 6","type":"exact"},{"name":"familial thoracic aortic aneurysm and aortic dissection caused by mutation in ACTA2","type":"exact"},{"name":"familial thoracic aortic aneurysm with livedo reticularis and iris flocculi","type":"related"}],"termid":"MONDO:0012730","terms_by_termid":{"MONDO:0012730":null},"xrefs":{"Monarch":{"xref_id":"0012730"}}}


id: MONDO:0035584
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare ophthalmic disorder characterized by typically bilateral, asymmetric, yellowish, punctate chorioretinal lesions of the posterior pole forming a linear branching pattern and progressing to atrophic scars. Subretinal neovascular membranes occur in many cases. Vitritis is always absent. Patients may present with blurred vision, scotoma, floaters, photopsia, and metamorphopsia. Choroidal neovascular membrane formation and subretinal fibrosis are the major causes of visual loss. The condition predominantly occurs in young myopic females.","definition_xrefs":["Orphanet:580951"],"direct_ancestors":[{"relation_name":"is_a","term_name":"eye disorder","termid":"MONDO:0005328"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"punctate inner choroidopathy","secondary_identifiers":["icd11.foundation:1322994548","GARD:7503","ICD10CM:H31.0","MEDGEN:152679","UMLS:C0730321"],"termid":"MONDO:0035584","xrefs":{"Monarch":{"xref_id":"0035584"}}}


id: PBO:0082086
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5-phospho-ribosyl-1(alpha)-pyrophosphate synthetase; synthesizes PRPP, which is required for nucleotide, histidine, and tryptophan biosynthesis; one of five related enzymes, which are active as heteromultimeric complexes; PRS2 has a paralog, PRS4, that arose from the whole genome duplication","termid":"PBO:0082086"}


id: PBO:0031911
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA N6-threonyl-carbamoyl-adenosine (t6A) Sua5 (predicted)","termid":"PBO:0031911"}


id: GO:0050621
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: L-tryptophan + O2 = alpha,beta-didehydrotryptophan + H2O2 + H+.","definition_xrefs":["RHEA:19901","EC:1.3.3.10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor","termid":"GO:0016634"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"tryptophan alpha,beta-oxidase activity","secondary_identifiers":["KEGG_REACTION:R05317","MetaCyc:1.4.3.17-RXN"],"synonyms":[{"name":"L-tryptophan 2',3'-oxidase activity","type":"related"},{"name":"L-tryptophan alpha,beta-dehydrogenase activity","type":"related"},{"name":"L-tryptophan:oxygen alpha,beta-oxidoreductase activity","type":"related"},{"name":"tryptophan a,b-oxidase activity","type":"exact"}],"termid":"GO:0050621"}


id: PBO:0001500
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hepatoma","termid":"PBO:0001500"}


id: MONDO:1010832
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Wilson disease that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Wilson disease, non-human animal","termid":"MONDO:1010164"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Wilson disease, dog","secondary_identifiers":["OMIA:001071-9615"],"termid":"MONDO:1010832","xrefs":{"Monarch":{"xref_id":"1010832"}}}


id: PR:Q9UUF2
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A methionine--tRNA ligase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02850","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methionine--tRNA ligase, cytoplasmic (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC17A3.04c","secondary_identifiers":["UniProtKB:Q9UUF2"],"synonyms":[{"name":"MetRS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-metG","type":"exact"},{"name":"methionyl-tRNA synthetase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UUF2"}


id: MONDO:0010840
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare, genetic neurological disorder characterized by the presence of diffuse pachygyria and arachnoid cysts, psychomotor developmental delay and intellectual disability. Seizures (absence, atonic and generalized tonic-clonic) and, on occasion, headache are also associated.","definition_xrefs":["Orphanet:2798"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"nervous system disorder","termid":"MONDO:0005071"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pachygyria-intellectual disability-epilepsy syndrome","secondary_identifiers":["MEDGEN:333107","GARD:409","MESH:C538091","OMIM:600176","UMLS:C1838491","SCTID:763861000"],"synonyms":[{"name":"Kuzniecky syndrome","type":"exact"},{"name":"pachygyria with intellectual disability and seizures","type":"related"},{"name":"pachygyria with intellectual disability, seizures, and arachnoid cysts","type":"related"},{"name":"pachygyria with mental retardation and seizures","type":"related"},{"name":"pachygyria with mental retardation, seizures, and arachnoid cysts","type":"related"},{"name":"pachygyria, intellectual disability and epilepsy","type":"related"},{"name":"pachygyria, mental retardation and epilepsy","type":"related"}],"termid":"MONDO:0010840","xrefs":{"Monarch":{"xref_id":"0010840"}}}


id: GO:0050974
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events in which a mechanical stimulus is received and converted into a molecular signal as part of sensory perception.","definition_xrefs":["GOC:ai","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"detection of stimulus involved in sensory perception","termid":"GO:0050906"},{"relation_name":"is_a","term_name":"detection of mechanical stimulus","termid":"GO:0050982"},{"relation_name":"part_of","term_name":"sensory perception of mechanical stimulus","termid":"GO:0050954"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of mechanical stimulus involved in sensory perception","synonyms":[{"name":"sensory detection of mechanical stimulus","type":"exact"},{"name":"sensory detection of mechanical stimulus during sensory perception","type":"exact"},{"name":"sensory perception, sensory detection of mechanical stimulus","type":"exact"},{"name":"sensory perception, sensory transduction of mechanical stimulus","type":"exact"},{"name":"sensory transduction of mechanical stimulus","type":"exact"},{"name":"sensory transduction of mechanical stimulus during sensory perception","type":"exact"}],"termid":"GO:0050974"}


id: GO:1905808
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of synapse pruning.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:27779093"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cellular component organization","termid":"GO:0051130"},{"relation_name":"is_a","term_name":"regulation of synapse pruning","termid":"GO:1905806"},{"relation_name":"positively_regulates","term_name":"synapse pruning","termid":"GO:0098883"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of synapse pruning","synonyms":[{"name":"activation of synapse disassembly","type":"narrow"},{"name":"regulation of synapse clearance","type":"broad"},{"name":"regulation of synapse disassembly","type":"broad"},{"name":"regulation of synapse elimination","type":"broad"},{"name":"regulation of synapse removal","type":"broad"},{"name":"up regulation of synapse disassembly","type":"exact"},{"name":"up-regulation of synapse disassembly","type":"exact"},{"name":"upregulation of synapse disassembly","type":"exact"}],"termid":"GO:1905808"}


id: PR:O74960
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pil1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74960"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sphingolipid long chain base-responsive protein pil1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC736.15","synonyms":[{"name":"Spom972h-pil1","type":"exact"},{"name":"protein kinase inhibitor pil1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74960"}


id: PBO:0059251
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein L20","termid":"PBO:0059251"}


id: PBO:0001520
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"karyopherin Kap14","termid":"PBO:0001520"}


id: PBO:0075284
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorting nexin 25","termid":"PBO:0075284"}


id: FYPO:0007501
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which assembly, arrangement of constituent parts, or disassembly of the horsetail-astral microtubule array is abnormal.","definition_xrefs":["GO:0032118","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal microtubule cytoskeleton organization during meiotic cell cycle","termid":"FYPO:0007113"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000054","FYPO:0001985","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"abnormal horsetail-astral microtubule organization","synonyms":[{"name":"abnormal horsetail-astral microtubule array organization","type":"exact"},{"name":"abnormal horsetail-astral microtubule organisation","type":"exact"},{"name":"abnormal horsetail-astral microtubule organization and biogenesis","type":"related"}],"termid":"FYPO:0007501"}


id: GO:0003987
data:
  {"annotated_genes":["SJAG_02741"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[81361],"is_not":false,"summary":null,"term":"GO:0003987"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA.","definition_xrefs":["EC:6.2.1.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CoA-ligase activity","termid":"GO:0016405"},{"relation_name":"is_a","term_name":"acid-thiol ligase activity","termid":"GO:0016878"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02741":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0003824","GO:0016874","GO:0003674"],"is_obsolete":false,"name":"acetate-CoA ligase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["RHEA:23176","Reactome:R-HSA-8875071","Reactome:R-HSA-71735","MetaCyc:ACETATE--COA-LIGASE-RXN","Reactome:R-HSA-449911"],"synonyms":[{"name":"ACS","type":"related"},{"name":"acetate thiokinase activity","type":"broad"},{"name":"acetate to acetyl-CoA","type":"related"},{"name":"acetate:CoA ligase (AMP-forming)","type":"related"},{"name":"acetic thiokinase activity","type":"related"},{"name":"acetyl CoA ligase activity","type":"related"},{"name":"acetyl CoA synthase activity","type":"related"},{"name":"acetyl activating enzyme","type":"related"},{"name":"acetyl coenzyme A synthetase activity","type":"related"},{"name":"acetyl-CoA synthase activity","type":"related"},{"name":"acetyl-CoA synthetase activity","type":"related"},{"name":"acetyl-activating enzyme activity","type":"related"},{"name":"acetyl-coenzyme A synthase activity","type":"related"},{"name":"acyl-activating enzyme activity","type":"broad"},{"name":"short chain fatty acyl-CoA synthetase activity","type":"related"},{"name":"short-chain acyl-coenzyme A synthetase activity","type":"related"}],"termid":"GO:0003987","terms_by_termid":{"GO:0003987":null}}


id: GO:1905458
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of lymphoid progenitor cell differentiation.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:27010503"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of hematopoietic progenitor cell differentiation","termid":"GO:1901534"},{"relation_name":"is_a","term_name":"regulation of lymphoid progenitor cell differentiation","termid":"GO:1905456"},{"relation_name":"positively_regulates","term_name":"lymphoid progenitor cell differentiation","termid":"GO:0002320"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of lymphoid progenitor cell differentiation","synonyms":[{"name":"activation of lymphoid progenitor cell differentiation","type":"narrow"},{"name":"up regulation of lymphoid progenitor cell differentiation","type":"exact"},{"name":"up-regulation of lymphoid progenitor cell differentiation","type":"exact"},{"name":"upregulation of lymphoid progenitor cell differentiation","type":"exact"}],"termid":"GO:1905458"}


id: PBO:0045510
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DSTN pseudogene 2","termid":"PBO:0045510"}


id: PBO:0044844
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defensin beta 130C (pseudogene)","termid":"PBO:0044844"}


id: PBO:0016042
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human PTBP3","termid":"PBO:0016042"}


id: MONDO:0009967
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"autosomal recessive osteopetrosis 3","termid":"MONDO:0009818"},{"relation_name":"is_a","term_name":"renal tubular acidosis","termid":"MONDO:0001909"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240","MONDO:0005066"],"is_obsolete":false,"name":"renal tubular acidosis 3","secondary_identifiers":["UMLS:C1849435","GARD:15228","MEDGEN:336601","MESH:C537759","OMIM:267200"],"synonyms":[{"name":"RTA, bicarbonate-wasting type","type":"exact"},{"name":"RTA, dislocation type","type":"exact"},{"name":"bicarbonate-wasting RTA","type":"related"},{"name":"renal tubular acidosis 3","type":"exact"},{"name":"renal tubular acidosis III","type":"exact"},{"name":"renal tubular acidosis, distal, type 3","type":"related"}],"termid":"MONDO:0009967","xrefs":{"Monarch":{"xref_id":"0009967"}}}


id: PBO:0001417
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calchone related protein family","termid":"PBO:0001417"}


id: GO:0005112
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a Notch (N) protein, a surface receptor.","definition_xrefs":["GOC:ceb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor binding","termid":"GO:0005102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"Notch binding","synonyms":[{"name":"N binding","type":"exact"},{"name":"N ligand","type":"narrow"},{"name":"Notch ligand","type":"narrow"},{"name":"Notch receptor binding","type":"exact"}],"termid":"GO:0005112"}


id: MONDO:0001955
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A dysentery that involves protozoan infection.","definition_xrefs":["DOID:14397"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dysentery","termid":"MONDO:0001517"},{"relation_name":"is_a","term_name":"protozoa infectious disease","termid":"MONDO:0002428"},{"relation_name":"is_a","term_name":"parasitic intestinal disorder","termid":"MONDO:0024270"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"protozoal dysentery","secondary_identifiers":["ICD9:007.8","UMLS:C2142761","MEDGEN:1843396"],"termid":"MONDO:0001955","xrefs":{"Monarch":{"xref_id":"0001955"}}}


id: PBO:0065988
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAF1 pseudogene 1","termid":"PBO:0065988"}


id: PATO:0002071
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An affinity which is relatively high.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"affinity","termid":"PATO:0002070"},{"relation_name":"is_a","term_name":"increased object quality","termid":"PATO:0002305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased affinity","termid":"PATO:0002071"}


id: GO:1904680
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a peptide from one side of a membrane to the other.","definition_xrefs":["GOC:vw","GOC:TermGenie","GO_REF:0000070"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane transporter activity","termid":"GO:0022857"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"peptide transmembrane transporter activity","secondary_identifiers":["GO:0015197","GO:0015637","Reactome:R-HSA-1500817"],"synonyms":[{"name":"peptide transporter activity","type":"related"},{"name":"peptide uptake permease activity","type":"related"}],"termid":"GO:1904680"}


id: PBO:0000018
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-protease_activator","termid":"PBO:0000018"}


id: GO:0001507
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of acetylcholine that occurs in the synaptic cleft during synaptic transmission.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylcholine catabolic process","termid":"GO:0006581"},{"relation_name":"part_of","term_name":"synaptic transmission, cholinergic","termid":"GO:0007271"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"acetylcholine catabolic process in synaptic cleft","synonyms":[{"name":"acetylcholine breakdown in synaptic cleft","type":"exact"},{"name":"acetylcholine degradation in synaptic cleft","type":"exact"}],"termid":"GO:0001507"}


id: MONDO:1011725
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"immunodeficiency disease, non-human animal","termid":"MONDO:1011724"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin 7S deficiency, non-human animal","secondary_identifiers":["OMIA:000551"],"termid":"MONDO:1011725","xrefs":{"Monarch":{"xref_id":"1011725"}}}


id: PATO:0001199
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's being narrow, with the two opposite margins parallel.","definition_xrefs":["ISBN:0881923214"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"linear","termid":"PATO:0001199"}


id: MONDO:0005699
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A form of actinomycosis characterized by slow-growing inflammatory lesions of the lymph nodes that drain the mouth (lumpy jaw), reddening of the overlying skin, and intraperitoneal abscesses.","definition_xrefs":["MESH:D000197"],"direct_ancestors":[{"relation_name":"is_a","term_name":"actinomycosis","termid":"MONDO:0005631"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cervicofacial actinomycosis","secondary_identifiers":["icd11.foundation:185601767","ICD10CM:A42.2","NCIT:C34351","SCTID:23014006","UMLS:C0001264","ICD9:039.3","MEDGEN:1308"],"synonyms":[{"name":"cervicofacial actinomycotic infection","type":"related"},{"name":"lumpy jaw","type":"related"}],"termid":"MONDO:0005699","xrefs":{"Monarch":{"xref_id":"0005699"}}}


id: GO:0008088
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of organelles or molecules along microtubules in neuron projections.","definition_xrefs":["ISBN:0815316194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transport along microtubule","termid":"GO:0010970"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"axo-dendritic transport","secondary_identifiers":["Wikipedia:Axoplasmic_transport"],"synonyms":[{"name":"axon cargo transport","type":"narrow"},{"name":"axonal transport","type":"narrow"},{"name":"axoplasmic transport","type":"narrow"}],"termid":"GO:0008088"}


id: MONDO:0035451
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete left sided atrial isomerism (obsolete MONDO:0035451)","secondary_identifiers":["Orphanet:566862"],"termid":"MONDO:0035451","xrefs":{"Monarch":{"xref_id":"0035451"}}}


id: PR:O13687
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- vma4 gene.","definition_xrefs":["UniProtKB:O13687","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V-type proton ATPase subunit E (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC11E3.07","synonyms":[{"name":"Spom972h-vma4","type":"exact"},{"name":"V-ATPase subunit E (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"vacuolar proton pump subunit E (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13687"}


id: PR:Q9Y7K1
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A peptide methionine sulfoxide reductase MsrB that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO02634","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C216.04c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC216.04c","secondary_identifiers":["UniProtKB:Q9Y7K1"],"synonyms":[{"name":"Spom972h-msrB","type":"exact"}],"termid":"PR:Q9Y7K1"}


id: PBO:0119654
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DOCK1 antisense RNA 1","termid":"PBO:0119654"}


id: PBO:0066530
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RANBP2 like and GRIP domain containing 5","termid":"PBO:0066530"}


id: PBO:0029812
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_actin_cable_organization_during_mitosis","termid":"PBO:0029812"}


id: PBO:0049221
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor kinase 4","termid":"PBO:0049221"}


id: PBO:0052525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kelch like family member 40","termid":"PBO:0052525"}


id: GO:0035654
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Formation of a macromolecular complex between proteins of the AP-3 adaptor complex and proteins and/or lipoproteins that are going to be transported by a clathrin-coated vesicle. In some cases, the AP-3 complex is a heterotetrameric AP-type membrane coat adaptor complex that, in some organisms, links clathrin to the membrane surface of a vesicle.","definition_xrefs":["GOC:lb","PMID:16162817","PMID:12802059"],"direct_ancestors":[{"relation_name":"is_a","term_name":"clathrin-coated vesicle cargo loading","termid":"GO:0035652"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0016192","GO:0006810"],"is_obsolete":false,"name":"clathrin-coated vesicle cargo loading, AP-3-mediated","synonyms":[{"name":"cargo loading into clathrin-coated vesicle, AP-3-mediated","type":"exact"}],"termid":"GO:0035654"}


id: MONDO:0002593
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete thymic carcinoma (obsolete MONDO:0002593)","termid":"MONDO:0002593","xrefs":{"Monarch":{"xref_id":"0002593"}}}


id: GO:0051585
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of dopamine into a presynaptic neuron or glial cell.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of dopamine uptake involved in synaptic transmission","termid":"GO:0051584"},{"relation_name":"is_a","term_name":"negative regulation of catecholamine uptake involved in synaptic transmission","termid":"GO:0051945"},{"relation_name":"negatively_regulates","term_name":"dopamine uptake involved in synaptic transmission","termid":"GO:0051583"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"negative regulation of dopamine uptake involved in synaptic transmission","synonyms":[{"name":"down regulation of dopamine uptake involved in synaptic transmission","type":"exact"},{"name":"down-regulation of dopamine uptake involved in synaptic transmission","type":"exact"},{"name":"downregulation of dopamine uptake involved in synaptic transmission","type":"exact"},{"name":"negative regulation of dopamine import involved in synaptic transmission","type":"exact"}],"termid":"GO:0051585"}


id: MONDO:1011632
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system disorder, non-human animal","termid":"MONDO:1011336"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetanic torticollar spasms, non-human animal","secondary_identifiers":["OMIA:000993"],"termid":"MONDO:1011632","xrefs":{"Monarch":{"xref_id":"1011632"}}}


id: PBO:0091598
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Caffeine-Induced cell Death","termid":"PBO:0091598"}


id: PBO:0074767
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 3A","termid":"PBO:0074767"}


id: PBO:0052985
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L antigen family member 3 pseudogene 1","termid":"PBO:0052985"}


id: GO:0043540
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A homodimeric, bifunctional enzyme complex which catalyzes the synthesis and degradation of fructose 2,6-bisphosphate, and is required for both glycolysis and gluconeogenesis.","definition_xrefs":["GOC:jl","GOC:so"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase complex, transferring phosphorus-containing groups","termid":"GO:0061695"},{"relation_name":"part_of","term_name":"cytosol","termid":"GO:0005829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005829"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005737","GO:0005829"],"is_obsolete":false,"name":"6-phosphofructo-2-kinase/fructose-2,6-biphosphatase complex","synonyms":[{"name":"6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 complex","type":"narrow"},{"name":"6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 complex","type":"narrow"},{"name":"6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 complex","type":"narrow"},{"name":"6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 complex","type":"narrow"}],"termid":"GO:0043540"}


id: GO:0015007
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A molecular entity that serves as an electron acceptor and electron donor in a chlorophyll electron transport system.","definition_xrefs":["ISBN:0198506732"],"gene_count":0,"genotype_count":0,"name":"obsolete electron carrier, chlorophyll electron transport system (obsolete GO:0015007)","synonyms":[{"name":"chlorophyll electron carrier","type":"related"},{"name":"electron carrier, chlorophyll electron transport system","type":"exact"}],"termid":"GO:0015007"}


id: PBO:0078844
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transient receptor potential cation channel subfamily A member 1","termid":"PBO:0078844"}


id: GO:0019055
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Interactions, directly with the host cell macromolecular machinery, to allow a virus to modulate the rate of the host cell cycle to facilitate virus replication.","definition_xrefs":["ISBN:0781718325","GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete perturbation by virus of host cell cycle regulation (obsolete GO:0019055)","synonyms":[{"name":"modification by virus of host cell cycle regulation","type":"exact"},{"name":"viral perturbation of cell cycle regulation","type":"exact"}],"termid":"GO:0019055"}


id: PBO:0049647
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"H4 clustered histone 1","termid":"PBO:0049647"}


id: GO:0052148
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which an organism effects a change in host enzyme activity. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by symbiont of host catalytic activity (obsolete GO:0052148)","synonyms":[{"name":"modulation by symbiont of host enzyme activity","type":"exact"},{"name":"modulation of catalytic activity of host by symbiont","type":"exact"},{"name":"regulation by symbiont of host catalytic activity","type":"exact"},{"name":"regulation of catalytic activity of host by symbiont","type":"exact"},{"name":"regulation of host catalytic activity by symbiont","type":"exact"}],"termid":"GO:0052148"}


id: PBO:0056633
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator complex subunit 12L","termid":"PBO:0056633"}


id: PBO:0086166
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein required for spore wall formation; subunit of leading edge protein (LEP) complex (Ssp1-Ady3-Don1-Irc10) that forms ring-like structure at leading edge of prospore membrane during meiosis II; mediates assembly of LEP complex, formation of ring-like structure via interaction with spindle pole body components, and prospore membrane maturation; potentially phosphorylated by Cdc28p; ADY3 has a paralog, CNM67, that arose from the whole genome duplication","termid":"PBO:0086166"}


id: PBO:0077099
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translocase of inner mitochondrial membrane 8 homolog B","termid":"PBO:0077099"}


id: FYPO:0003348
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the substrate specificity of a gene product that executes glutathione synthetase activity in wild type is altered such that the gene product executes homoglutathione synthetase activity.","definition_xrefs":["PomBase:mah","PMID:23091597"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered substrate specificity","termid":"FYPO:0003347"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000654","FYPO:0001985","FYPO:0000652","FYPO:0000661"],"is_obsolete":false,"name":"altered substrate specificity, glutathione synthetase to homoglutathione synthetase activity","synonyms":[{"name":"abnormal catalytic activity, altered substrate specificity, glutathione synthetase to homoglutathione synthetase activity","type":"exact"}],"termid":"FYPO:0003348"}


id: MONDO:0026777
data:
  {"annotated_genes":["SJAG_00853"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87712],"is_not":false,"summary":null,"term":"MONDO:0026777"}]},"cv_name":"mondo","definition":"An adult-onset inflammatory disease that affects only males and is caused by somatic, not germline, mutations. The disorder is characterized by adult onset of rheumatologic symptoms at a mean age of 64 years. Features include recurrent fevers, pulmonary and dermatologic inflammatory manifestations, vasculitis, deep vein thrombosis, arthralgias, and ear and nose chondritis. Laboratory studies indicate hematologic abnormalities, including macrocytic anemia, as well as increased levels of acute-phase reactants; about half of patients have positive autoantibodies. Bone marrow biopsy shows degenerative vacuolization restricted to myeloid and erythroid precursor cells, as well as variable hematopoietic dyspoiesis and dysplasias. The condition does not respond to rheumatologic medications and the features may result in premature death.","definition_xrefs":["OMIM:301054"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autoinflammatory syndrome","termid":"MONDO:0019751"},{"relation_name":"is_a","term_name":"hereditary disorder of connective tissue","termid":"MONDO:0023603"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00853":null},"genotype_count":0,"is_obsolete":false,"name":"VEXAS syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["Orphanet:596753","UMLS:C5435753","DOID:0080828","GARD:15001","MEDGEN:1765785","NCIT:C181924"],"synonyms":[{"name":"VEXAS","type":"exact"},{"name":"VEXAS syndrome, somatic","type":"exact"},{"name":"vacuoles, E1 enzyme, X-linked, autoinflammatory, somatic syndrome","type":"exact"}],"termid":"MONDO:0026777","terms_by_termid":{"MONDO:0026777":null},"xrefs":{"Monarch":{"xref_id":"0026777"}}}


id: GO:0007419
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the ventral cord over time, from its formation to the mature structure. The ventral cord is one of the distinguishing traits of the central nervous system of all arthropods (such as insects, crustaceans and arachnids) as well as many other invertebrates, such as the annelid worms.","definition_xrefs":["GOC:bf","PMID:30826502","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"animal organ development","termid":"GO:0048513"},{"relation_name":"part_of","term_name":"central nervous system development","termid":"GO:0007417"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ventral cord development","termid":"GO:0007419"}


id: MOD:00156
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-tyrosine residue to an L-2',4',5'-topaquinone.","definition_xrefs":["ChEBI:21187","PubMed:1569055","RESID:AA0147","PubMed:2111581","Unimod:392#Y","PubMed:10387067","PubMed:1457410"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon oxygenated residue","termid":"MOD:00679"},{"relation_name":"is_a","term_name":"modified L-tyrosine residue","termid":"MOD:00919"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-2',4',5'-topaquinone","synonyms":[{"name":"(2S)-2-amino-3-(5-hydroxy-2,5-cyclohexadien-1,4-dion-2-yl)propanoic acid","type":"exact"},{"name":"2,4,5-trihydroxyphenylalanine quinone","type":"exact"},{"name":"5-(2-carboxy-2-aminoethyl)-2-hydroxy-1,4-benzoquinone","type":"exact"},{"name":"L-2',4',5'-topaquinone","type":"exact"},{"name":"L-2,4,5-TOPAquinone","type":"exact"},{"name":"MOD_RES 2',4',5'-topaquinone","type":"exact"},{"name":"Quinone","type":"related"},{"name":"TPQ","type":"exact"},{"name":"TopaQ","type":"exact"},{"name":"quinone","type":"related"}],"termid":"MOD:00156"}


id: MONDO:0003028
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant soft tissue neoplasm primarily involving the thyroid gland.","definition_xrefs":["NCIT:C6041"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thyroid cancer","termid":"MONDO:0002108"},{"relation_name":"is_a","term_name":"soft tissue sarcoma","termid":"MONDO:0018078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"thyroid sarcoma","secondary_identifiers":["DOID:4515","MEDGEN:234950","UMLS:C1336756"],"synonyms":[{"name":"sarcoma of the thyroid","type":"exact"},{"name":"sarcoma of the thyroid gland","type":"exact"},{"name":"sarcoma of thyroid","type":"exact"},{"name":"sarcoma of thyroid gland","type":"exact"},{"name":"thyroid gland sarcoma","type":"exact"},{"name":"thyroid sarcoma","type":"exact"}],"termid":"MONDO:0003028","xrefs":{"Monarch":{"xref_id":"0003028"}}}


id: MONDO:1010992
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hydrocephalus that occurs in sheep.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrocephalus, non-human animal","termid":"MONDO:1010233"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydrocephalus, sheep","secondary_identifiers":["OMIA:000487-9940"],"termid":"MONDO:1010992","xrefs":{"Monarch":{"xref_id":"1010992"}}}


id: PBO:0083437
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the uncharacterized ORF YOL036W","termid":"PBO:0083437"}


id: GO:0097128
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex consisting of cyclin D1 and cyclin-dependent kinase 4 (CDK4). Cyclins are characterized by periodicity in protein abundance throughout the cell cycle. Cyclin-dependent kinases represent a family of serine/threonine protein kinases that become active upon binding to a cyclin regulatory partner.","definition_xrefs":["PMID:15935619","GOC:so"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclin-dependent protein kinase holoenzyme complex","termid":"GO:0000307"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"cyclin D1-CDK4 complex","termid":"GO:0097128"}


id: GO:0009960
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the endosperm over time, from its formation to the mature structure. The endosperm is formed during fertilization and provides nutrients to the developing embryo.","definition_xrefs":["GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"tissue development","termid":"GO:0009888"},{"relation_name":"part_of","term_name":"seed development","termid":"GO:0048316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"endosperm development","termid":"GO:0009960"}


id: MONDO:0002425
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A primary or metastatic malignant neoplasm that affects the rectosigmoid area. Representative examples include carcinoma, lymphoma, and sarcoma.","definition_xrefs":["NCIT:C7420"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sigmoid colon cancer","termid":"MONDO:0001464"},{"relation_name":"is_a","term_name":"rectosigmoid junction neoplasm","termid":"MONDO:0002423"},{"relation_name":"is_a","term_name":"rectal cancer","termid":"MONDO:0006519"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0004335"],"is_obsolete":false,"name":"rectosigmoid junction cancer","secondary_identifiers":["MEDGEN:57558","ICD10CM:C19","SCTID:363414004","ICD9:154.0","UMLS:C0153443","DOID:2782"],"synonyms":[{"name":"cancer of rectosigmoid junction","type":"exact"},{"name":"malignant neoplasm of rectosigmoid","type":"exact"},{"name":"malignant neoplasm of rectosigmoid junction","type":"exact"},{"name":"malignant neoplasm of the rectosigmoid junction","type":"exact"},{"name":"malignant rectosigmoid junction neoplasm","type":"exact"},{"name":"malignant rectosigmoid neoplasm","type":"exact"},{"name":"malignant rectosigmoid tumor","type":"exact"},{"name":"malignant rectosigmoid tumour","type":"exact"},{"name":"malignant tumor of rectosigmoid junction","type":"exact"},{"name":"malignant tumor of the rectosigmoid junction","type":"exact"},{"name":"malignant tumour of rectosigmoid junction","type":"exact"},{"name":"malignant tumour of the rectosigmoid junction","type":"exact"},{"name":"rectosigmoid junction cancer","type":"exact"}],"termid":"MONDO:0002425","xrefs":{"Monarch":{"xref_id":"0002425"}}}


id: PBO:0077625
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thymosin beta 15C","termid":"PBO:0077625"}


id: MONDO:1010243
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Cerebellar degeneration that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neurodegenerative disease, non-human animal","termid":"MONDO:1012953"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cerebellar degeneration, non-human animal","secondary_identifiers":["OMIA:001221"],"termid":"MONDO:1010243","xrefs":{"Monarch":{"xref_id":"1010243"}}}


id: PBO:0061719
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NUT family member 2D","termid":"PBO:0061719"}


id: PBO:0089049
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi pyruvyltransferase Pvg1","termid":"PBO:0089049"}


id: FYPO:0003212
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a cell forms a septum that is kinked, i.e. has multiple angles along its length.","definition_xrefs":["PMID:22891259","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal septum morphology during vegetative growth","termid":"FYPO:0002023"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000032","FYPO:0000631","FYPO:0001320"],"is_obsolete":false,"name":"kinked septum","synonyms":[{"name":"kinked septum during mitotic cell cycle","type":"related"},{"name":"kinked septum during vegetative growth","type":"exact"},{"name":"twisted septum","type":"related"}],"termid":"FYPO:0003212"}


id: PBO:0083499
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified gene YMC1/YPR058W","termid":"PBO:0083499"}


id: PATO:0002251
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A degree of pigmentation quality that is relative low.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"pigmented","termid":"PATO:0002248"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased pigmentation","synonyms":[{"name":"hypopigmented","type":"exact"}],"termid":"PATO:0002251"}


id: PBO:0078486
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ile (anticodon AAT) 6-1","termid":"PBO:0078486"}


id: MONDO:0054750
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"familial amyotrophic lateral sclerosis","termid":"MONDO:0005144"},{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"amyotrophic lateral sclerosis, susceptibility to, 24","secondary_identifiers":["UMLS:C4693523","DOID:0081378","OMIM:617892","MEDGEN:1632999"],"synonyms":[{"name":"ALS24","type":"related"},{"name":"amyotrophic lateral sclerosis, susceptibility to, 24","type":"exact"}],"termid":"MONDO:0054750","xrefs":{"Monarch":{"xref_id":"0054750"}}}


id: PBO:0046095
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 4A3","termid":"PBO:0046095"}


id: SO:0001442
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A non-polar, hydorophobic amino acid encoded by the codon ATG.","direct_ancestors":[{"relation_name":"is_a","term_name":"amino_acid","termid":"SO:0001237"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methionine","synonyms":[{"name":"M","type":"exact"},{"name":"Met","type":"exact"}],"termid":"SO:0001442"}


id: MONDO:0017777
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rat-bite fever (obsolete MONDO:0017777)","termid":"MONDO:0017777","xrefs":{"Monarch":{"xref_id":"0017777"}}}


id: GO:0000988
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binding to a protein or protein complex, to modulate transcription. A protein binding transcription factor may or may not also interact with the template nucleic acid (either DNA or RNA) as well.","definition_xrefs":["GOC:txnOH"],"gene_count":0,"genotype_count":0,"name":"obsolete transcription factor activity, protein binding (obsolete GO:0000988)","synonyms":[{"name":"protein binding transcription factor activity","type":"exact"},{"name":"transcription factor activity","type":"broad"}],"termid":"GO:0000988"}


id: PBO:0045755
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endothelin converting enzyme 2","termid":"PBO:0045755"}


id: GO:1901877
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of calcium ion binding.","definition_xrefs":["GOC:rl","GOC:BHF","PMID:16432188","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of binding","termid":"GO:0051100"},{"relation_name":"is_a","term_name":"regulation of calcium ion binding","termid":"GO:1901876"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of calcium ion binding","synonyms":[{"name":"down regulation of calcium ion binding","type":"exact"},{"name":"down regulation of calcium ion storage activity","type":"related"},{"name":"down-regulation of calcium ion binding","type":"exact"},{"name":"down-regulation of calcium ion storage activity","type":"related"},{"name":"downregulation of calcium ion binding","type":"exact"},{"name":"downregulation of calcium ion storage activity","type":"related"},{"name":"inhibition of calcium ion binding","type":"narrow"},{"name":"inhibition of calcium ion storage activity","type":"related"},{"name":"negative regulation of calcium ion storage activity","type":"related"}],"termid":"GO:1901877"}


id: GO:2000352
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of endothelial cell apoptotic process.","definition_xrefs":["GOC:mah","GOC:mtg_apoptosis","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of apoptotic process","termid":"GO:0043066"},{"relation_name":"is_a","term_name":"regulation of endothelial cell apoptotic process","termid":"GO:2000351"},{"relation_name":"negatively_regulates","term_name":"endothelial cell apoptotic process","termid":"GO:0072577"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of endothelial cell apoptotic process","synonyms":[{"name":"negative regulation of apoptosis of endothelial cells","type":"exact"},{"name":"negative regulation of endothelial cell apoptosis","type":"narrow"},{"name":"negative regulation of endothelial cell programmed cell death by apoptosis","type":"exact"},{"name":"negative regulation of killing of endothelial cells","type":"exact"},{"name":"negative regulation of programmed cell death of endothelial cells by apoptosis","type":"exact"},{"name":"negative regulation of programmed cell death, endothelial cells","type":"exact"}],"termid":"GO:2000352"}


id: MONDO:0013613
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Leber congenital amaurosis in which the cause of the disease is a mutation in the KCNJ13 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Leber congenital amaurosis","termid":"MONDO:0018998"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0002320"],"is_obsolete":false,"name":"Leber congenital amaurosis 16","secondary_identifiers":["MEDGEN:481692","GARD:10885","UMLS:C3280062","DOID:0110118","ICD10CM:H35.5","OMIM:614186"],"synonyms":[{"name":"KCNJ13 Leber congenital amaurosis","type":"exact"},{"name":"LCA16","type":"exact"},{"name":"Leber congenital amaurosis 16","type":"exact"},{"name":"Leber congenital amaurosis caused by mutation in KCNJ13","type":"exact"},{"name":"Leber congenital amaurosis type 16","type":"exact"}],"termid":"MONDO:0013613","xrefs":{"Monarch":{"xref_id":"0013613"}}}


id: GO:1904658
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of sensory perception of sweet taste.","definition_xrefs":["PMID:1716172","GOC:TermGenie","GOC:mr","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of nervous system process","termid":"GO:0031646"},{"relation_name":"is_a","term_name":"regulation of sensory perception of sweet taste","termid":"GO:1904656"},{"relation_name":"positively_regulates","term_name":"sensory perception of sweet taste","termid":"GO:0050916"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of sensory perception of sweet taste","synonyms":[{"name":"activation of sensory perception of sweet taste","type":"narrow"},{"name":"activation of sweet taste perception","type":"narrow"},{"name":"positive regulation of sweet taste perception","type":"exact"},{"name":"up regulation of sensory perception of sweet taste","type":"exact"},{"name":"up regulation of sweet taste perception","type":"exact"},{"name":"up-regulation of sensory perception of sweet taste","type":"exact"},{"name":"up-regulation of sweet taste perception","type":"exact"},{"name":"upregulation of sensory perception of sweet taste","type":"exact"},{"name":"upregulation of sweet taste perception","type":"exact"}],"termid":"GO:1904658"}


id: PBO:0069581
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 855, pseudogene","termid":"PBO:0069581"}


id: PBO:0003116
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EH domains","termid":"PBO:0003116"}


id: PBO:0075258
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorting nexin 18 pseudogene 11","termid":"PBO:0075258"}


id: GO:0050978
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events required for an organism to receive an electrical stimulus relating to a magnetic field, convert it to a molecular signal, and recognize and characterize the signal. Movement in a magnetic field results in an induced electric field, which can be perceived by organisms such as elasmobranch fish.","definition_xrefs":["GOC:ai","PMID:15886990","Wikipedia:Magnetoception"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensory perception of electrical stimulus","termid":"GO:0050952"},{"relation_name":"is_a","term_name":"magnetoreception","termid":"GO:0050958"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"magnetoreception by sensory perception of electrical stimulus","synonyms":[{"name":"magnetoreception by electrical stimulus","type":"exact"},{"name":"magnetoreception through electrical stimulus","type":"exact"},{"name":"magnetoreception, sensory perception of electrical stimulus","type":"exact"},{"name":"magnetoreception, using electrical stimulus","type":"exact"}],"termid":"GO:0050978"}


id: GO:0005609
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A laminin complex composed of alpha2, beta2 and gamma1 polypeptide chains.","definition_xrefs":["GOC:jl","PMID:10842354"],"direct_ancestors":[{"relation_name":"is_a","term_name":"laminin complex","termid":"GO:0043256"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"laminin-4 complex","synonyms":[{"name":"laminin-221 complex","type":"exact"}],"termid":"GO:0005609"}


id: GO:0001856
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a C5a product of the complement cascade.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"complement binding","termid":"GO:0001848"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005515","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"complement component C5a binding","termid":"GO:0001856"}


id: PBO:0056407
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane associated ring-CH-type finger 5","termid":"PBO:0056407"}


id: GO:0047270
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-glucose + lipopolysaccharide = UDP + alpha-D-glucosyl-lipopolysaccharide.","definition_xrefs":["EC:2.4.1.73"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glucosyltransferase activity","termid":"GO:0035251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0016757","GO:0003674"],"is_obsolete":false,"name":"lipopolysaccharide glucosyltransferase II activity","secondary_identifiers":["MetaCyc:RXN0-5125","RHEA:30003"],"synonyms":[{"name":"LPS glucosyltransferase II activity","type":"exact"},{"name":"UDP-glucose:galactosyl-lipopolysaccharide alpha-D-glucosyltransferase activity","type":"related"},{"name":"UDPglucose:galactosyl-lipopolysaccharide alpha-D-glucosyltransferase activity","type":"related"},{"name":"uridine diphosphoglucose-galactosylpolysaccharide glucosyltransferase activity","type":"related"}],"termid":"GO:0047270"}


id: GO:0046310
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of 1,3-dichloro-2-propanol (DCP), a halohydrin suspected of being carcinogenic, mutagenic and genotoxic.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete 1,3-dichloro-2-propanol catabolic process (obsolete GO:0046310)","synonyms":[{"name":"1,3-dichloro-2-propanol breakdown","type":"exact"},{"name":"1,3-dichloro-2-propanol catabolism","type":"exact"},{"name":"1,3-dichloro-2-propanol degradation","type":"exact"}],"termid":"GO:0046310"}


id: MONDO:0020375
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete coralliform cataract (obsolete MONDO:0020375)","secondary_identifiers":["Orphanet:98990"],"termid":"MONDO:0020375","xrefs":{"Monarch":{"xref_id":"0020375"}}}


id: PBO:0062241
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily BE member 1 pseudogene","termid":"PBO:0062241"}


id: GO:0009328
data:
  {"annotated_genes":["SJAG_02206","SJAG_03626"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[79473,80825],"is_not":false,"summary":null,"term":"GO:0009328"}]},"cv_name":"cellular_component","definition":"An enzyme complex that catalyzes the ligation of phenylalanine to tRNA(Phe), forming L-phenylalanyl-tRNA(Phe).","definition_xrefs":["PMID:20223217"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02206":null,"SJAG_03626":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"phenylalanine-tRNA ligase complex","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0009328","terms_by_termid":{"GO:0009328":null}}


id: GO:0016015
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Acts as a trigger for a pattern specification process when present at a specific concentration within a gradient.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"receptor ligand activity","termid":"GO:0048018"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0140677"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0140677","GO:0005488","GO:0098772"],"is_obsolete":false,"name":"morphogen activity","termid":"GO:0016015"}


id: GO:0102776
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: pelargonidin 3-O-beta-D-glucoside + UDP-alpha-D-glucose = anthocyanidin 3,5-di-O-beta-D-glucoside + UDP + H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete UDP-D-glucose:pelargonidin-3-O-beta-D-glucoside 5-O-glucosyltransferase activity (obsolete GO:0102776)","termid":"GO:0102776"}


id: FYPO:0000815
data:
  {"alleles_by_uniquename":{"SJAG_01242:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01242","name":"vps32delta","uniquename":"SJAG_01242:allele-1"},"SJAG_01745:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01745","name":"lem2delta","uniquename":"SJAG_01745:allele-1"},"SJAG_01906:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01906","name":"nem1delta","uniquename":"SJAG_01906:allele-1"},"SJAG_02763:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_02763","name":"ned1delta","uniquename":"SJAG_02763:allele-1"},"SJAG_02763:allele-2":{"allele_type":"amino_acid_mutation","description":"D422E,D424E","gene_uniquename":"SJAG_02763","name":"ned1cat","synonyms":[{"name":"Catalytic mutant","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-2"},"SJAG_02763:allele-4":{"allele_type":"amino_acid_mutation","description":"S235E; S651E","gene_uniquename":"SJAG_02763","name":"ned1S235E/S651E","synonyms":[{"name":"phosphomimetic","reference":"PMID:26774782","type":"exact"}],"uniquename":"SJAG_02763:allele-4"},"SJAG_02763:allele-5":{"allele_type":"amino_acid_mutation","description":"S499E; S538E; T620E; T638E; S651E","gene_uniquename":"SJAG_02763","name":"ned1-5E","uniquename":"SJAG_02763:allele-5"},"SJAG_03449:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03449","name":"man1delta","uniquename":"SJAG_03449:allele-1"},"SJAG_03449:allele-2":{"allele_type":"partial_amino_acid_deletion","description":"man1DHEH","gene_uniquename":"SJAG_03449","name":"Man1DHEH","uniquename":"SJAG_03449:allele-2"},"SJAG_03449:allele-3":{"allele_type":"amino_acid_insertion_and_deletion","description":"man1-1-488","gene_uniquename":"SJAG_03449","name":"man1-1-488","uniquename":"SJAG_03449:allele-3"},"SJAG_03891:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03891","name":"alx1delta","uniquename":"SJAG_03891:allele-1"},"SJAG_03892:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03892","name":"vps4delta","uniquename":"SJAG_03892:allele-1"},"SJAG_03940:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03940","name":"nem2delta","uniquename":"SJAG_03940:allele-1"},"SJAG_04284:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_04284","name":"nup61delta","uniquename":"SJAG_04284:allele-1"},"SJAG_04464:allele-1":{"allele_type":"amino_acid_mutation","description":"R152C","gene_uniquename":"SJAG_04464","name":"pim1-R152C","synonyms":[{"name":"Inferred CDK-phospho-mimic mutation","reference":"PMID:28954740","type":"exact"}],"uniquename":"SJAG_04464:allele-1"},"SJAG_05207:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_05207","name":"cmp7delta","uniquename":"SJAG_05207:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[121350],"is_not":false,"summary":null,"term":"FYPO:0000815"},{"annotations":[121431,121433,121364,121426],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0003779"},{"annotations":[121633,121365,121634,121641,121259,121253,121260,121252],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"FYPO:0007772"},{"annotations":[121565,121577,121572,121580,121564,121568],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0001556"},{"annotations":[121344],"is_not":false,"rel_names":["output_of"],"summary":null,"term":"FYPO:0003976"}]},"cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which nuclear envelope organization is abnormal. 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id: MONDO:0032686
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spermatogenic failure","termid":"MONDO:0004983"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"spermatogenic failure 35","secondary_identifiers":["OMIM:618341","UMLS:C5193038","DOID:0111914","MEDGEN:1679765"],"synonyms":[{"name":"SPERMATOGENIC FAILURE 35","type":"related"},{"name":"SPGF35","type":"related"}],"termid":"MONDO:0032686","xrefs":{"Monarch":{"xref_id":"0032686"}}}


id: MONDO:0036042
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KAT6B-related multiple congenital anomalies syndrome","secondary_identifiers":["Orphanet:597749","MEDGEN:1843234","GARD:22399","UMLS:C5680266"],"synonyms":[{"name":"KAT6B-related disorder","type":"exact"}],"termid":"MONDO:0036042","xrefs":{"Monarch":{"xref_id":"0036042"}}}


id: GO:0060340
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of a type I interferon-mediated signaling pathway.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cytokine-mediated signaling pathway","termid":"GO:0001961"},{"relation_name":"is_a","term_name":"positive regulation of innate immune response","termid":"GO:0045089"},{"relation_name":"is_a","term_name":"regulation of type I interferon-mediated signaling pathway","termid":"GO:0060338"},{"relation_name":"positively_regulates","term_name":"type I interferon-mediated signaling pathway","termid":"GO:0060337"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of type I interferon-mediated signaling pathway","synonyms":[{"name":"positive regulation of type I interferon-mediated signalling pathway","type":"exact"}],"termid":"GO:0060340"}


id: GO:0098573
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the mitochondrial membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.","definition_xrefs":["GOC:dos"],"gene_count":0,"genotype_count":0,"name":"obsolete intrinsic component of mitochondrial membrane (obsolete GO:0098573)","synonyms":[{"name":"intrinsic to mitochondrial membrane","type":"narrow"}],"termid":"GO:0098573"}


id: PBO:0046078
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 4A1 pseudogene 3","termid":"PBO:0046078"}


id: MONDO:0016522
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A syndrome characterized by the association of conotruncal heart defects, myelomeningocele and craniofacial dysmorphism similar to that seen in monosomy 22q11.","definition_xrefs":["Orphanet:2351"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Kousseff syndrome","secondary_identifiers":["UMLS:C2931444","MESH:C537223","GARD:4752","SCTID:726083008","MEDGEN:444057"],"synonyms":[{"name":"sacral meningocele conotruncal heart defects","type":"related"},{"name":"sacral meningocele, conotruncal heart defects, and minor anomalies of head and neck","type":"related"},{"name":"sacral meningocele-conotruncal heart defects syndrome","type":"exact"}],"termid":"MONDO:0016522","xrefs":{"Monarch":{"xref_id":"0016522"}}}


id: PBO:0087695
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the origin recognition complex (ORC); ORC directs DNA replication by binding to replication origins and is also involved in transcriptional silencing","termid":"PBO:0087695"}


id: PBO:0073141
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SEC22 homolog B4, pseudogene","termid":"PBO:0073141"}


id: GO:0008727
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: GDP-alpha-D-mannose + H2O = GDP + D-mannose + H+.","definition_xrefs":["MetaCyc:GDPMANMANHYDRO-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mannosidase activity","termid":"GO:0015923"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016787","GO:0016798"],"is_obsolete":false,"name":"GDP-mannose mannosyl hydrolase activity","secondary_identifiers":["RHEA:28102"],"termid":"GO:0008727"}


id: GO:0042982
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving amyloid precursor protein (APP), the precursor of amyloid-beta, a glycoprotein associated with Alzheimer's disease.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein metabolic process","termid":"GO:0019538"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"amyloid precursor protein metabolic process","synonyms":[{"name":"APP metabolic process","type":"exact"},{"name":"APP metabolism","type":"exact"},{"name":"amyloid precursor protein metabolism","type":"exact"}],"termid":"GO:0042982"}


id: MONDO:0020749
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"polycystic lipomembranous osteodysplasia with sclerosing leukoencephaly","termid":"MONDO:0009092"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0006025"],"is_obsolete":false,"name":"polycystic lipomembranous osteodysplasia with sclerosing leukoencephalopathy 1","secondary_identifiers":["OMIM:221770","UMLS:C4721893","MEDGEN:1648386"],"synonyms":[{"name":"polycystic lipomembranous osteodysplasia with sclerosing leukoencephalopathy 1","type":"exact"}],"termid":"MONDO:0020749","xrefs":{"Monarch":{"xref_id":"0020749"}}}


id: PBO:0090640
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial carrier, NAD Yea6","termid":"PBO:0090640"}


id: GO:0042270
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of protecting a cell from natural killer cell mediated cytotoxicity.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of natural killer cell mediated cytotoxicity","termid":"GO:0045953"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protection from natural killer cell mediated cytotoxicity","synonyms":[{"name":"protection from NK cell mediated cell death","type":"exact"},{"name":"protection from NK cell mediated cell killing","type":"exact"},{"name":"protection from NK cell mediated cytolysis","type":"related"},{"name":"protection from NK cell mediated cytotoxicity","type":"exact"},{"name":"protection from natural killer cell mediated cell death","type":"exact"},{"name":"protection from natural killer cell mediated cell killing","type":"exact"},{"name":"protection from natural killer cell mediated cytolysis","type":"related"}],"termid":"GO:0042270"}


id: MONDO:0007038
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Achoo syndrome","secondary_identifiers":["OMIM:100820","UMLS:C1863416","MEDGEN:400287","MESH:C535300"],"synonyms":[{"name":"Achoo syndrome","type":"exact"},{"name":"Peroutka sneeze","type":"related"},{"name":"autosomal dominant compelling Helioophthalmic outburst syndrome","type":"related"},{"name":"autosomal dominant compelling helio ophthalmic outburst syndrome","type":"related"},{"name":"photic sneeze reflex","type":"related"},{"name":"sneezing from Light exposure","type":"related"}],"termid":"MONDO:0007038","xrefs":{"Monarch":{"xref_id":"0007038"}}}


id: PBO:0079477
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TWSG1 divergent transcript","termid":"PBO:0079477"}


id: MONDO:0700248
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant epidermolytic ichthyosis","termid":"MONDO:0020702"},{"relation_name":"is_a","term_name":"epidermolytic hyperkeratosis 2","termid":"MONDO:0958184"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0000426"],"is_obsolete":false,"name":"epidermolytic hyperkeratosis 2A, autosomal dominant","secondary_identifiers":["MEDGEN:1846123","OMIM:620150","UMLS:C5882671"],"termid":"MONDO:0700248","xrefs":{"Monarch":{"xref_id":"0700248"}}}


id: GO:0033616
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a proton-transporting ATP synthase in the plasma membrane.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"proton-transporting ATP synthase complex assembly","termid":"GO:0043461"},{"relation_name":"part_of","term_name":"plasma membrane organization","termid":"GO:0007009"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0065003","GO:0061024","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"plasma membrane proton-transporting ATP synthase complex assembly","termid":"GO:0033616"}


id: PBO:0042700
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CUGBP Elav-like family member 2","termid":"PBO:0042700"}


id: MONDO:0010473
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A syndromic X-linked intellectual disability characterized by intellectual disability, delayed psychomotor development, seizures, large joint contractures, cardiac abnormalities, and abnormal positioning of the thumbs that has material basis in mutation in the CLIC2 gene on chromosome Xq28.","definition_xrefs":["PMID:22814392","DOID:0060828"],"direct_ancestors":[{"relation_name":"is_a","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"X-linked intellectual disability-cardiomegaly-congestive heart failure syndrome","secondary_identifiers":["OMIM:300886","GARD:17485","Orphanet:324410","MEDGEN:763827","UMLS:C3550913"],"synonyms":[{"name":"MRXS32","type":"exact"},{"name":"intellectual developmental disorder, X-linked syndromic 32, X-linked recessive","type":"exact"},{"name":"intellectual disability, X-linked, syndromic 32","type":"exact"},{"name":"intellectual disability, X-linked, syndromic type 32","type":"exact"},{"name":"mental retardation, X-linked, syndromic 32","type":"exact"},{"name":"mental retardation, X-linked, syndromic type 32","type":"exact"}],"termid":"MONDO:0010473","xrefs":{"Monarch":{"xref_id":"0010473"}}}


id: PBO:0067456
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 581, pseudogene","termid":"PBO:0067456"}


id: MONDO:0009825
data:
  {"annotated_genes":["SJAG_01995"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87477],"is_not":false,"summary":null,"term":"MONDO:0009825"}]},"cv_name":"mondo","definition":"5-Oxoprolinase deficiency is clinically a very heterogeneous condition characterized by 5-oxoprolinuria.","definition_xrefs":["Orphanet:33572"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited glutathione metabolism disease","termid":"MONDO:0040566"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01995":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019241"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0019241","MONDO:0005066"],"is_obsolete":false,"name":"5-oxoprolinase deficiency","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:C535322","GARD:5681","HP:0040142","MEDGEN:82814","SCTID:26132002","UMLS:C0268525","OMIM:260005","ICD9:270.8"],"synonyms":[{"name":"5-alpha-oxoprolinase deficiency","type":"related"},{"name":"5-oxoprolinase deficiency","type":"exact"},{"name":"5-oxoprolinase deficiency (disease)","type":"exact"},{"name":"OPLAHD","type":"related"},{"name":"inborn 5-oxoprolinase (ATP-hydrolyzing) activity disorder","type":"exact"},{"name":"inborn error of 5-oxoprolinase (ATP-hydrolyzing) activity","type":"exact"},{"name":"oxoprolinuria due to 5-oxoprolinase deficiency","type":"related"},{"name":"oxoprolinuria due to oxoprolinase deficiency","type":"exact"},{"name":"rare inborn error of 5-oxoprolinase (ATP-hydrolyzing) activity","type":"exact"}],"termid":"MONDO:0009825","terms_by_termid":{"MONDO:0009825":null},"xrefs":{"Monarch":{"xref_id":"0009825"}}}


id: MONDO:0014271
data:
  {"annotated_genes":["SJAG_04127"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87475],"is_not":false,"summary":null,"term":"MONDO:0014271"}]},"cv_name":"mondo","definition":"STT3B-CDG is a form of congenital disorders of N-linked glycosylation characterized by intrauterine growth retardation, microcephaly, failure to thrive, developmental delay, intellectual disability, hypotonia, seizures, optic nerve atrophy and respiratory difficulties. Genital abnormalities (micropenis, hypoplastic scrotum, undescended testes) have also been reported. STT3B-CDG is caused by mutations in the gene STT3B (3p24.1).","definition_xrefs":["Orphanet:370924"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital disorder of glycosylation type I","termid":"MONDO:0005500"},{"relation_name":"is_a","term_name":"disorder of protein N-glycosylation","termid":"MONDO:0017740"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04127":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0024322"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0024322","MONDO:0005066"],"is_obsolete":false,"name":"STT3B-congenital disorder of glycosylation","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C2931007","DOID:0080573","MESH:C535751","MEDGEN:419309","OMIM:615597","SCTID:733112007","GARD:17603"],"synonyms":[{"name":"CDG IX","type":"related"},{"name":"CDG syndrome type IX","type":"exact"},{"name":"CDG-Ix","type":"exact"},{"name":"CDG1X","type":"exact"},{"name":"STT3B-CDG","type":"exact"},{"name":"STT3B-congenital disorder of glycosylation","type":"exact"},{"name":"carbohydrate deficient glycoprotein syndrome type IX","type":"exact"},{"name":"congenital disorder of glycosylation type 1x","type":"exact"},{"name":"congenital disorder of glycosylation type IX","type":"exact"},{"name":"congenital disorder of glycosylation, type IX","type":"related"}],"termid":"MONDO:0014271","terms_by_termid":{"MONDO:0014271":null},"xrefs":{"Monarch":{"xref_id":"0014271"}}}


id: FYPO:0003845
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A transport phenotype in which protein localization to the prospore membrane is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization","termid":"FYPO:0003627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"normal protein localization to prospore membrane","synonyms":[{"name":"normal protein localisation to prospore membrane","type":"exact"},{"name":"normal protein localization to forespore membrane","type":"exact"}],"termid":"FYPO:0003845"}


id: MONDO:0011195
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A form of Usher syndrome type I that features a novel locus for USH1, USH1E, mapping to chromosome band 21q21. It is inherited in an autosomal recessive manner.","definition_xrefs":["OMIM:602097"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Usher syndrome type 1","termid":"MONDO:0010168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025"],"is_obsolete":false,"name":"Usher syndrome type 1E","secondary_identifiers":["DOID:0110833","GARD:5439","UMLS:C1865865","ICD10CM:H35.5","MEDGEN:400865"],"synonyms":[{"name":"USH1E","type":"exact"},{"name":"USHER syndrome, type IE","type":"related"},{"name":"Usher syndrome type IE","type":"exact"},{"name":"Usher syndrome, type 1E","type":"related"}],"termid":"MONDO:0011195","xrefs":{"Monarch":{"xref_id":"0011195"}}}


id: MONDO:0016365
data:
  {"annotated_genes":["SJAG_01151"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87482],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007767"},{"annotations":[87483],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007768"}]},"cv_name":"mondo","definition":"An instance of primary hyperparathyroidism (disease) that is caused by an inherited modification of the individual's genome.","definition_xrefs":["MONDO:patterns/hereditary"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary hyperparathyroidism","termid":"MONDO:0010837"},{"relation_name":"is_a","term_name":"hereditary hyperparathyroidism","termid":"MONDO:0016166"},{"relation_name":"is_a","term_name":"tumor of parathyroid gland","termid":"MONDO:0021360"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01151":null},"genotype_count":0,"is_obsolete":false,"name":"familial primary hyperparathyroidism","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:2837","Orphanet:2207","MEDGEN:543605","icd11.foundation:1186866066","UMLS:C0271846"],"synonyms":[{"name":"hereditary primary hyperparathyroidism (disease)","type":"exact"}],"termid":"MONDO:0016365","terms_by_termid":{"MONDO:0007767":null,"MONDO:0007768":null},"xrefs":{"Monarch":{"xref_id":"0016365"}}}


id: PBO:0034108
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_subsequence","termid":"PBO:0034108"}


id: GO:0006279
data:
  {"annotated_genes":["SJAG_01762","SJAG_02348","SJAG_00884","SJAG_00857","SJAG_05239","SJAG_01354","SJAG_04210"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[57161,58535,61725,61782,63583,63778,67304],"is_not":false,"summary":null,"term":"GO:0006279"}]},"cv_name":"biological_process","definition":"The replication of DNA that precedes meiotic cell division.","definition_xrefs":["GOC:TermGenie","GOC:ai","GO_REF:0000060"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear DNA replication","termid":"GO:0033260"},{"relation_name":"is_a","term_name":"meiotic cell cycle process","termid":"GO:1903046"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00857":null,"SJAG_00884":null,"SJAG_01354":null,"SJAG_01762":null,"SJAG_02348":null,"SJAG_04210":null,"SJAG_05239":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006260"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006259","GO:0008150","GO:0006260","GO:0007049"],"is_obsolete":false,"name":"premeiotic DNA replication","references_by_uniquename":{"GO_REF:0000117":null},"secondary_identifiers":["GO:1902968"],"synonyms":[{"name":"DNA replication during S phase involved in meiotic cell cycle","type":"related"},{"name":"DNA replication involved in S phase involved in meiotic cell cycle","type":"exact"},{"name":"DNA replication involved in S-phase involved in meiotic cell cycle","type":"exact"},{"name":"meiotic DNA replication","type":"related"},{"name":"meiotic DNA synthesis","type":"related"},{"name":"meiotic cell cycle DNA replication","type":"exact"},{"name":"meiotic nuclear cell cycle DNA replication","type":"exact"},{"name":"nuclear cell cycle DNA replication involved in meiotic cell cycle","type":"exact"},{"name":"premeiotic DNA synthesis","type":"related"}],"termid":"GO:0006279","terms_by_termid":{"GO:0006279":null}}


id: PBO:0040139
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"achaete-scute family bHLH transcription factor 2","termid":"PBO:0040139"}


id: MONDO:0017276
data:
  {"annotated_genes":["SJAG_04489","SJAG_03345"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87141],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010936"},{"annotations":[88535],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008178"}]},"cv_name":"mondo","definition":"Frontotemporal dementia (FTD) comprises a group of neurodegenerative disorders, characterized by progressive changes in behavior, executive dysfunction and language impairment, as a result of degeneration of the medial prefrontal and frontoinsular cortices. Four clinical subtypes have been identified: semantic dementia, progressive non-fluent aphasia, behavioral variant FTD and right temporal lobar atrophy.","definition_xrefs":["Orphanet:282"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"basal ganglia disorder","termid":"MONDO:0003996"},{"relation_name":"is_a","term_name":"hereditary dementia","termid":"MONDO:0015547"},{"relation_name":"is_a","term_name":"inherited neurodegenerative disorder","termid":"MONDO:0024237"}],"gene_count":2,"genes_by_uniquename":{"SJAG_03345":null,"SJAG_04489":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002039"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0002039","MONDO:0005559"],"is_obsolete":false,"name":"frontotemporal dementia","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:9255","MEDGEN:83266","icd11.foundation:831337417","MedDRA:10068968","NANDO:1200548","MESH:D057180","UMLS:C0338451","GARD:8436","NCIT:C84719"],"synonyms":[{"name":"FTD","type":"exact"},{"name":"MSTD","type":"related"},{"name":"Wilhemsen-Lynch disease","type":"exact"},{"name":"frontotemporal lobar degeneration","type":"exact"},{"name":"frontotemporal lobe dementia (FLDEM)","type":"related"},{"name":"multiple system tauopathy with presenile dementia","type":"exact"},{"name":"pallidopontonigral degeneration","type":"exact"}],"termid":"MONDO:0017276","terms_by_termid":{"MONDO:0008178":null,"MONDO:0010936":null},"xrefs":{"Monarch":{"xref_id":"0017276"}}}


id: GO:1900882
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving 17-methylnonadec-1-ene.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alkene metabolic process","termid":"GO:0043449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"17-methylnonadec-1-ene metabolic process","synonyms":[{"name":"17-methylnonadec-1-ene metabolism","type":"exact"}],"termid":"GO:1900882"}


id: GO:1902967
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within a mitotic spindle midzone.","definition_xrefs":["GOC:TermGenie","PMID:16824200","GO_REF:0000087"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to mitotic spindle","termid":"GO:1902480"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"protein localization to mitotic spindle midzone","synonyms":[{"name":"protein localisation in mitotic spindle midzone","type":"exact"},{"name":"protein localisation to mitotic spindle midzone","type":"exact"},{"name":"protein localization in mitotic spindle midzone","type":"exact"}],"termid":"GO:1902967"}


id: FYPO:0004411
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing oxaliplatin.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002057"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000139","FYPO:0000003","FYPO:0002060","FYPO:0002058","FYPO:0002057"],"is_obsolete":false,"name":"normal growth on oxaliplatin","synonyms":[{"name":"normal cell population growth in presence of oxaliplatin","type":"exact"},{"name":"normal cell population growth on oxaliplatin","type":"exact"},{"name":"normal cellular response to oxaliplatin","type":"related"},{"name":"normal vegetative cell population growth on oxaliplatin","type":"exact"}],"termid":"FYPO:0004411"}


id: _global:has_output_o_product_of
data:
  {"annotation_feature_type":"gene","cv_name":"go/extensions/gorel","definition":"This is the combination of the has_output relation with the gene_product_of relation.","definition_xrefs":["GOC:mtg_berkeley_2013"],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_output_o_product_of","secondary_identifiers":["GOREL:0001029"],"termid":"_global:has_output_o_product_of"}


id: GO:0039614
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which a virus activates or increases the frequency, rate or extent of phosphorylation of viral or host proteins in a host.","definition_xrefs":["GOC:bf"],"gene_count":0,"genotype_count":0,"name":"obsolete induction by virus of host protein phosphorylation (obsolete GO:0039614)","termid":"GO:0039614"}


id: PATO:0000930
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000930 light_quality sensitivity (obsolete PATO:0000930)","termid":"PATO:0000930"}


id: GO:0001916
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of T cell mediated cytotoxicity.","definition_xrefs":["ISBN:0781735149","GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of leukocyte mediated cytotoxicity","termid":"GO:0001912"},{"relation_name":"is_a","term_name":"regulation of T cell mediated cytotoxicity","termid":"GO:0001914"},{"relation_name":"is_a","term_name":"positive regulation of T cell mediated immunity","termid":"GO:0002711"},{"relation_name":"positively_regulates","term_name":"T cell mediated cytotoxicity","termid":"GO:0001913"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of T cell mediated cytotoxicity","synonyms":[{"name":"activation of T cell mediated cytotoxicity","type":"narrow"},{"name":"positive regulation of T cell mediated apoptosis","type":"exact"},{"name":"positive regulation of T cell mediated cell death","type":"exact"},{"name":"positive regulation of T cell mediated cell killing","type":"exact"},{"name":"positive regulation of T cell mediated cytolysis","type":"related"},{"name":"positive regulation of T lymphocyte mediated cytotoxicity","type":"exact"},{"name":"positive regulation of T-cell mediated apoptosis","type":"exact"},{"name":"positive regulation of T-cell mediated cell death","type":"exact"},{"name":"positive regulation of T-cell mediated cell killing","type":"exact"},{"name":"positive regulation of T-cell mediated cytolysis","type":"related"},{"name":"positive regulation of T-cell mediated cytotoxicity","type":"exact"},{"name":"positive regulation of T-lymphocyte mediated cytotoxicity","type":"exact"},{"name":"stimulation of T cell mediated cytotoxicity","type":"narrow"},{"name":"up regulation of T cell mediated cytotoxicity","type":"exact"},{"name":"up-regulation of T cell mediated cytotoxicity","type":"exact"},{"name":"upregulation of T cell mediated cytotoxicity","type":"exact"}],"termid":"GO:0001916"}


id: PBO:0078298
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Asp (anticodon GTC) 2-3","termid":"PBO:0078298"}


id: GO:0017183
data:
  {"annotated_genes":["SJAG_01058","SJAG_04085","SJAG_00235","SJAG_01418","SJAG_04846","SJAG_02467","SJAG_04544","SJAG_00251"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[59826,60160,68184,78798,79644,80907,81918,120788],"is_not":false,"summary":null,"term":"GO:0017183"}]},"cv_name":"biological_process","definition":"The modification of peptidyl-histidine to 2'-(3-carboxamido-3-(trimethylammonio)propyl)-L-histidine, known as diphthamide, found in translation elongation factor EF-2. The process occurs in eukaryotes and archaea but not eubacteria.","definition_xrefs":["PMID:20559380","GOC:pde"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptidyl-histidine modification","termid":"GO:0018202"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00235":null,"SJAG_00251":null,"SJAG_01058":null,"SJAG_01418":null,"SJAG_02467":null,"SJAG_04085":null,"SJAG_04544":null,"SJAG_04846":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein histidyl modification to diphthamide","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-5358493","RESID:AA0040"],"synonyms":[{"name":"peptidyl-diphthamide anabolism from peptidyl-histidine","type":"exact"},{"name":"peptidyl-diphthamide biosynthetic process from peptidyl-histidine","type":"exact"},{"name":"peptidyl-diphthamide formation from peptidyl-histidine","type":"exact"},{"name":"peptidyl-diphthamide synthesis from peptidyl-histidine","type":"exact"}],"termid":"GO:0017183","terms_by_termid":{"GO:0017183":null}}


id: FYPO:0005318
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription from a promoter that contains one or more MluI cell cycle box factor elements (MCBs) occurs to a lower extent than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased transcription from RNA polymerase II promoter during vegetative growth","termid":"FYPO:0005229"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001985","FYPO:0005447","FYPO:0006551","FYPO:0000294"],"is_obsolete":false,"name":"decreased transcription from MCB promoter","synonyms":[{"name":"decreased transcription from MCB promoter during mitotic cell cycle","type":"related"},{"name":"decreased transcription from MCB promoter during vegetative growth","type":"exact"},{"name":"expression of MBF target genes decreased","type":"related"}],"termid":"FYPO:0005318"}


id: PBO:0055207
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2632","termid":"PBO:0055207"}


id: PBO:0054799
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2212","termid":"PBO:0054799"}


id: GO:0070205
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1-carboxylate = (1R,6R)-2-succinyl-6-hydroxycyclohexa-2,4-diene-1-carboxylate + pyruvate.","definition_xrefs":["RHEA:25597","EC:4.2.99.20"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity","termid":"GO:0016835"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase activity","secondary_identifiers":["MetaCyc:RXN-9310","KEGG_REACTION:R08166"],"synonyms":[{"name":"2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase activity","type":"related"},{"name":"6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate synthase activity","type":"related"},{"name":"MenH","type":"related"},{"name":"SHCHC synthase activity","type":"related"},{"name":"YfbB","type":"related"}],"termid":"GO:0070205"}


id: PBO:0003762
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA turnover and ribosome assembly protein Mrt4 (predicted)","termid":"PBO:0003762"}


id: GO:0030965
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The transfer of electrons from NADH to the quinone pool that occurs during oxidative phosphorylation and results in the generation of a proton gradient, mediated by the enzyme known as NADH-quinone oxidoreductase.","definition_xrefs":["GOC:sd","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"respiratory electron transport chain","termid":"GO:0022904"},{"relation_name":"part_of","term_name":"plasma membrane ATP synthesis coupled electron transport","termid":"GO:0042774"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"part_of","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0008150","GO:0006091"],"is_obsolete":false,"name":"plasma membrane electron transport, NADH to quinone","termid":"GO:0030965"}


id: PBO:0028535
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_cell_tip,_with_protein_mislocalized_to_cytoplasm","termid":"PBO:0028535"}


id: GO:0016674
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces an acceptor other than quinone or a related compound, oxygen, NAD, NADP, an iron-sulfur protein, disulfide or a cytochrome.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete oxidoreductase activity, acting on sulfur group of donors, other acceptors (obsolete GO:0016674)","synonyms":[{"name":"oxidoreductase activity, acting on sulfur group of donors, other acceptors","type":"exact"},{"name":"oxidoreductase activity, acting on sulphur group of donors, other acceptors","type":"exact"}],"termid":"GO:0016674"}


id: GO:0071471
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of non-ionic solutes (e.g. mannitol, sorbitol) in the environment.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to non-ionic osmotic stress","termid":"GO:0010335"},{"relation_name":"is_a","term_name":"cellular response to osmotic stress","termid":"GO:0071470"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to non-ionic osmotic stress","termid":"GO:0071471"}


id: GO:0009103
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of lipopolysaccharides, any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria.","definition_xrefs":["GOC:mr","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide biosynthetic process","termid":"GO:0000271"},{"relation_name":"is_a","term_name":"lipid biosynthetic process","termid":"GO:0008610"},{"relation_name":"is_a","term_name":"lipopolysaccharide metabolic process","termid":"GO:0008653"},{"relation_name":"is_a","term_name":"carbohydrate derivative biosynthetic process","termid":"GO:1901137"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0005975","GO:0008150","GO:0006629"],"is_obsolete":false,"name":"lipopolysaccharide biosynthetic process","secondary_identifiers":["KEGG_PATHWAY:map00540"],"synonyms":[{"name":"LPS biosynthetic process","type":"exact"},{"name":"lipopolysaccharide anabolism","type":"exact"},{"name":"lipopolysaccharide biosynthesis","type":"exact"},{"name":"lipopolysaccharide formation","type":"exact"},{"name":"lipopolysaccharide synthesis","type":"exact"}],"termid":"GO:0009103"}


id: PBO:0045343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"docking protein 3","termid":"PBO:0045343"}


id: GO:0098018
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The part of the viral capsid that comprises the less common capsomere type. For example, in a T=3 icosahedral capsid, which is composed of 12 pentameric and 20 hexameric capsomeres, the pentameric capsomeres are minor subunits.","definition_xrefs":["GOC:bm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"capsomere","termid":"GO:0046727"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"viral capsid, minor subunit","synonyms":[{"name":"minor capsomere","type":"exact"},{"name":"minor head protein","type":"related"}],"termid":"GO:0098018"}


id: MONDO:0001282
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Endometriosis that affects the fallopian tube. Symptoms include infertility, pelvic pain, painful menstruation, and painful intercourse.","definition_xrefs":["NCIT:C26763"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fallopian tube disorder","termid":"MONDO:0002156"},{"relation_name":"is_a","term_name":"endometriosis","termid":"MONDO:0005133"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fallopian tube endometriosis","secondary_identifiers":["ICD9:617.2","SCTID:22611009","UMLS:C0014177","MEDGEN:41788","DOID:11424"],"synonyms":[{"name":"endometriosis (disease) of fallopian tube","type":"exact"},{"name":"endometriosis of fallopian tube","type":"exact"},{"name":"fallopian tube endometriosis","type":"exact"},{"name":"fallopian tube endometriosis (disease)","type":"exact"}],"termid":"MONDO:0001282","xrefs":{"Monarch":{"xref_id":"0001282"}}}


id: PBO:0012836
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complented by H. sapiens KRAS","termid":"PBO:0012836"}


id: PR:O94702
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An endoplasmic reticulum metallopeptidase 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO04550"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endoplasmic reticulum metallopeptidase 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1259.02c","secondary_identifiers":["UniProtKB:O94702"],"synonyms":[{"name":"FXNA-like protease (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-ERMP1","type":"exact"}],"termid":"PR:O94702"}


id: PBO:0083249
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; identified by fungal homology and RT-PCR","termid":"PBO:0083249"}


id: PBO:0018088
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ER-localized ubiquitin-protein ligase E3 Doa10 (predicted)","termid":"PBO:0018088"}


id: PBO:0070792
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L12 pseudogene 22","termid":"PBO:0070792"}


id: PBO:0036536
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anthranilate synthase component I Trp3","termid":"PBO:0036536"}


id: PBO:0081791
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 721","termid":"PBO:0081791"}


id: GO:0021558
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the trochlear nerve over time, from its formation to the mature structure. The trochlear nerve is a motor nerve and is the only cranial nerve to exit the brain dorsally. The trochlear nerve innervates the superior oblique muscle.","definition_xrefs":["GOC:dgh","GO_REF:0000021","GOC:cls","GOC:dph","GOC:jid","ISBN:0838580343"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cranial nerve development","termid":"GO:0021545"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"trochlear nerve development","synonyms":[{"name":"CN IV development","type":"related"},{"name":"cranial nerve 4 development","type":"exact"},{"name":"cranial nerve IV development","type":"exact"}],"termid":"GO:0021558"}


id: GO:0008421
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N-long-chain-fatty-acyl-L-glutamate + H2O = a fatty acid anion + L-glutamate.","definition_xrefs":["EC:3.5.1.55"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides","termid":"GO:0016811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0016810","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"long-chain fatty-acyl-glutamate deacylase activity","secondary_identifiers":["RHEA:17517","MetaCyc:3.5.1.55-RXN"],"synonyms":[{"name":"N-long-chain-fatty-acyl-L-glutamate amidohydrolase activity","type":"related"},{"name":"long-chain acylglutamate amidase activity","type":"related"},{"name":"long-chain aminoacylase activity","type":"related"},{"name":"long-chain fatty acyl-glutamate deacylase activity","type":"exact"},{"name":"long-chain-fatty-acyl-glutamate deacylase activity","type":"exact"}],"termid":"GO:0008421"}


id: MONDO:0014797
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"lymphatic malformation","termid":"MONDO:0019313"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"lymphatic malformation 6","secondary_identifiers":["OMIM:616843","MEDGEN:908120","UMLS:C4225184"],"synonyms":[{"name":"LMPH3","type":"exact"},{"name":"generalised lymphatic dysplasia of Fotiou","type":"related"},{"name":"generalized lymphatic dysplasia of Fotiou","type":"related"},{"name":"lymphedema, hereditary, 3","type":"related"},{"name":"lymphedema, hereditary, III","type":"exact"},{"name":"lymphedema, hereditary, type III","type":"exact"}],"termid":"MONDO:0014797","xrefs":{"Monarch":{"xref_id":"0014797"}}}


id: MONDO:0020229
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete cerebral disease with cataract (obsolete MONDO:0020229)","secondary_identifiers":["Orphanet:98645"],"termid":"MONDO:0020229","xrefs":{"Monarch":{"xref_id":"0020229"}}}


id: MONDO:0043327
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Discharge of cerebrospinal fluid through a hole through the skull bone most commonly draining from the nose (CEREBROSPINAL FLUID RHINORRHEA) or the ear (CEREBROSPINAL FLUID OTORRHEA).","definition_xrefs":["MESH:D065634"],"direct_ancestors":[{"relation_name":"is_a","term_name":"central nervous system disorder","termid":"MONDO:0002602"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cerebrospinal fluid leak","secondary_identifiers":["SCTID:230744007","MEDGEN:9695","UMLS:C0023182"],"synonyms":[{"name":"CSF leak","type":"related"},{"name":"CSF otorrhea","type":"related"},{"name":"CSF rhinorrhea","type":"related"},{"name":"Drainages, cerebrospinal fluid","type":"related"},{"name":"Leakages, cerebrospinal fluid","type":"related"},{"name":"Leaks, cerebrospinal fluid","type":"related"},{"name":"cerebrospinal fluid Drainages","type":"related"},{"name":"cerebrospinal fluid Leakages","type":"related"},{"name":"cerebrospinal fluid Leaks","type":"related"},{"name":"cerebrospinal fluid drainage","type":"related"},{"name":"cerebrospinal fluid drainage, post traumatic","type":"related"},{"name":"cerebrospinal fluid drainage, post-traumatic","type":"related"},{"name":"cerebrospinal fluid drainage, spontaneous","type":"related"},{"name":"cerebrospinal fluid drainage, traumatic","type":"related"},{"name":"cerebrospinal fluid leak","type":"exact"},{"name":"cerebrospinal fluid leak, post traumatic","type":"related"},{"name":"cerebrospinal fluid leak, post-traumatic","type":"related"},{"name":"cerebrospinal fluid leak, spontaneous","type":"related"},{"name":"cerebrospinal fluid leak, traumatic","type":"related"},{"name":"cerebrospinal fluid leakage","type":"related"},{"name":"cerebrospinal fluid leakage, post traumatic","type":"related"},{"name":"cerebrospinal fluid leakage, post-traumatic","type":"related"},{"name":"cerebrospinal fluid leakage, spontaneous","type":"related"},{"name":"cerebrospinal fluid leakage, traumatic","type":"related"},{"name":"csf - cerebrospinal fluid leak","type":"related"},{"name":"drainage, cerebrospinal fluid","type":"related"},{"name":"fluid Drainages, cerebrospinal","type":"related"},{"name":"fluid Leakages, cerebrospinal","type":"related"},{"name":"fluid Leaks, cerebrospinal","type":"related"},{"name":"fluid drainage, cerebrospinal","type":"related"},{"name":"fluid leak, cerebrospinal","type":"related"},{"name":"fluid leakage, cerebrospinal","type":"related"},{"name":"leak, cerebrospinal fluid","type":"related"},{"name":"leakage, cerebrospinal fluid","type":"related"},{"name":"spinal CSF leak","type":"related"},{"name":"spinal cerebrospinal fluid leak","type":"related"},{"name":"spinal cerebrospinal fluid leak, post traumatic","type":"related"},{"name":"spinal cerebrospinal fluid leak, post-traumatic","type":"related"},{"name":"spinal cerebrospinal fluid leak, spontaneous","type":"related"},{"name":"spinal cerebrospinal fluid leak, traumatic","type":"related"}],"termid":"MONDO:0043327","xrefs":{"Monarch":{"xref_id":"0043327"}}}


id: PBO:0089873
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S10","termid":"PBO:0089873"}


id: PBO:0058436
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 5000","termid":"PBO:0058436"}


id: PBO:0113378
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative divalent metal ion transporter involved in iron homeostasis; transcriptionally regulated by metal ions; member of Nramp family of metal transport proteins; targeted to vacuole via AP-3 pathway; protein abundance increases in response to DNA replication stress","termid":"PBO:0113378"}


id: PBO:0017906
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sSuppressor for K-252a Sensitivity","termid":"PBO:0017906"}


id: GO:1901659
data:
  {"annotated_genes":["SJAG_05334","SJAG_04264","SJAG_04265","SJAG_01261","SJAG_02179","SJAG_03096","SJAG_05029","SJAG_01859","SJAG_01070","SJAG_00134","SJAG_01781","SJAG_00694","SJAG_00044","SJAG_06634","SJAG_04735","SJAG_03881"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90699],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046086"},{"annotations":[118824],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006169"},{"annotations":[71647],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006190"},{"annotations":[71648],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071590"},{"annotations":[71649],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071592"},{"annotations":[100459,100460],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043174"},{"annotations":[75193,95601,67861,62492],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006166"},{"annotations":[99612,115788],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0043097"},{"annotations":[75079],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046132"},{"annotations":[74156,76636,75443,96557],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0031591"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of glycosyl compound.","definition_xrefs":["GOC:TermGenie","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate derivative biosynthetic process","termid":"GO:1901137"},{"relation_name":"is_a","term_name":"glycosyl compound metabolic process","termid":"GO:1901657"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00044":null,"SJAG_00134":null,"SJAG_00694":null,"SJAG_01070":null,"SJAG_01261":null,"SJAG_01781":null,"SJAG_01859":null,"SJAG_02179":null,"SJAG_03096":null,"SJAG_03881":null,"SJAG_04264":null,"SJAG_04265":null,"SJAG_04735":null,"SJAG_05029":null,"SJAG_05334":null,"SJAG_06634":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"glycosyl compound biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000043":null,"GO_REF:0000107":null},"synonyms":[{"name":"glycosyl compound anabolism","type":"exact"},{"name":"glycosyl compound biosynthesis","type":"exact"},{"name":"glycosyl compound formation","type":"exact"},{"name":"glycosyl compound synthesis","type":"exact"}],"termid":"GO:1901659","terms_by_termid":{"GO:0006166":null,"GO:0006169":null,"GO:0006190":null,"GO:0031591":null,"GO:0043097":null,"GO:0043174":null,"GO:0046086":null,"GO:0046132":null,"GO:0071590":null,"GO:0071592":null}}


id: GO:1990828
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a hepatocyte (specialized epithelial cell of the liver) loses the structural or functional features that characterize it in the mature organism, or some other relatively stable phase of the organism's life history. Under certain conditions, these cells can revert back to the features of the stem cells that were their ancestors.","definition_xrefs":["PMID:20102719"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell dedifferentiation","termid":"GO:0043697"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hepatocyte dedifferentiation","termid":"GO:1990828"}


id: PBO:0085452
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Possible rhomboid protease; has similarity to eukaryotic rhomboid proteases including Pcp1p","termid":"PBO:0085452"}


id: MONDO:0700181
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Fibrosarcoma that occurs in a cat.","definition_xrefs":["NCIT:C134560"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sarcoma, non-human animal","termid":"MONDO:0700131"},{"relation_name":"is_a","term_name":"feline neoplasm","termid":"MONDO:0700175"},{"relation_name":"is_a","term_name":"connective tissue disorder, non-human animal","termid":"MONDO:1011309"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"feline fibrosarcoma","termid":"MONDO:0700181","xrefs":{"Monarch":{"xref_id":"0700181"}}}


id: PBO:0011415
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-activated_by","termid":"PBO:0011415"}


id: SO:0000345
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A tag produced from a single sequencing read from a cDNA clone or PCR product; typically a few hundred base pairs long.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"mRNA","termid":"SO:0000234"},{"relation_name":"is_a","term_name":"tag","termid":"SO:0000324"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EST","synonyms":[{"name":"expressed sequence tag","type":"exact"}],"termid":"SO:0000345"}


id: PBO:0081937
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger HIT-type containing 1","termid":"PBO:0081937"}


id: PBO:0072491
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein SA pseudogene 20","termid":"PBO:0072491"}


id: MOD:00064
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-lysine residue to N6-acetyl-L-lysine.","definition_xrefs":["ChEBI:17752","PubMed:11369851","PubMed:12175151","PubMed:1680872","PubMed:670159","RESID:AA0055","Unimod:1#K","OMSSA:24","PubMed:11857757","DeltaMass:214","PubMed:11999733","PubMed:15350136","PubMed:14730666"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-acetylated L-lysine","termid":"MOD:00723"},{"relation_name":"is_a","term_name":"N6-acylated L-lysine","termid":"MOD:01875"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:01875"},{"rel_name":"is_a","termid":"MOD:00408"}],"interesting_parent_ids":["MOD:01875","MOD:00408"],"is_obsolete":false,"name":"N6-acetyl-L-lysine","synonyms":[{"name":"(2S)-6-acetamido-2-aminohexanoic acid","type":"exact"},{"name":"6-acetylamino-2-aminohexanoic acid","type":"exact"},{"name":"6-acetylazanyl-2-aminohexanoic acid","type":"exact"},{"name":"Acetyl","type":"related"},{"name":"Acetylation","type":"related"},{"name":"MOD_RES N6-acetyllysine","type":"exact"},{"name":"N(zeta)-acetyllysine","type":"exact"},{"name":"N6-acetyl-L-lysine","type":"exact"},{"name":"N6-acetylated L-lysine","type":"exact"},{"name":"N6AcLys","type":"exact"},{"name":"acetylk","type":"exact"},{"name":"epsilon-acetyllysine","type":"exact"}],"termid":"MOD:00064"}


id: FYPO:0007993
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed during the first meiotic nuclear division in which the localization of a protein to chromatin at the pericentromeric regions is decreased.","definition_xrefs":["PomBase:mlr","PMID:18716626"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to centromere during meiotic cell cycle","termid":"FYPO:0006529"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0001985","FYPO:0005447"],"is_obsolete":false,"name":"decreased protein localization to pericentromeric region during meiosis I","termid":"FYPO:0007993"}


id: PBO:0087839
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Third subunit of DNA polymerase delta; involved in chromosomal DNA replication; required for error-prone DNA synthesis in the presence of DNA damage and processivity; forms a complex with Rev3p, Rev7p and Pol31p; interacts with Hys2p, PCNA (Pol30p), and Pol1p","termid":"PBO:0087839"}


id: PBO:0065567
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prostaglandin F2 receptor inhibitor","termid":"PBO:0065567"}


id: PBO:0090691
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane trafficking protein, ER to Golgi Psg2","termid":"PBO:0090691"}


id: GO:0035782
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a mature natural killer cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis). A mature natural killer cell is a natural killer cell that is developmentally mature and expresses a variety of inhibitory and activating receptors that recognize MHC class and other stress related molecules.","definition_xrefs":["CL:0000824","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"natural killer cell chemotaxis","termid":"GO:0035747"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mature natural killer cell chemotaxis","synonyms":[{"name":"activated natural killer cell chemotaxis","type":"exact"}],"termid":"GO:0035782"}


id: MONDO:0005985
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Virus diseases caused by the togaviridae.","definition_xrefs":["MESH:D014036"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary viral infectious disease","termid":"MONDO:0100329"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Togaviridae infectious disease","secondary_identifiers":["MEDGEN:21575","UMLS:C0040361"],"synonyms":[{"name":"Togaviridae caused disease or disorder","type":"exact"},{"name":"Togaviridae disease or disorder","type":"exact"}],"termid":"MONDO:0005985","xrefs":{"Monarch":{"xref_id":"0005985"}}}


id: PBO:0003747
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription factor, Atf-CREB family Atf21","termid":"PBO:0003747"}


id: SO:0001005
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region where the DNA does not contain an equal distrubution of all four possible nucleotides or does not contain all four nucleotides.","direct_ancestors":[{"relation_name":"has_quality","term_name":"low_complexity","termid":"SO:0001004"},{"relation_name":"is_a","term_name":"experimental_feature","termid":"SO:0001410"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"low_complexity_region","synonyms":[{"name":"low complexity region","type":"exact"}],"termid":"SO:0001005"}


id: PBO:0059069
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"molybdenum cofactor sulfurase","termid":"PBO:0059069"}


id: PBO:0053835
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1100","termid":"PBO:0053835"}


id: GO:0106346
data:
  {"annotated_genes":["SJAG_01958"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[97055],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0120048"}]},"cv_name":"molecular_function","definition":"Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an snRNA molecule.","definition_xrefs":["PMID:27573892"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA methyltransferase activity","termid":"GO:0008173"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01958":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0140098","GO:0003674","GO:0003824","GO:0016741","GO:0016740"],"is_obsolete":false,"name":"snRNA methyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0106346","terms_by_termid":{"GO:0120048":null}}


id: MONDO:0030852
data:
  {"annotated_genes":["SJAG_02990"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87507],"is_not":false,"summary":null,"term":"MONDO:0030852"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02990":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"neurodevelopmental disorder with dysmorphic facies, sleep disturbance, and brain abnormalities","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:619103","UMLS:C5436821","MEDGEN:1777442"],"synonyms":[{"name":"NEDFASB","type":"exact"},{"name":"neurodevelopmental disorder with dysmorphic facies, sleep disturbance, and brain abnormalities","type":"exact"}],"termid":"MONDO:0030852","terms_by_termid":{"MONDO:0030852":null},"xrefs":{"Monarch":{"xref_id":"0030852"}}}


id: MONDO:0018962
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"digestive system disorder","termid":"MONDO:0004335"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"common mesentery","secondary_identifiers":["UMLS:C0266235","icd11.foundation:2101515260","MEDGEN:539782","Orphanet:620","SCTID:52159006"],"synonyms":[{"name":"universal mesentery","type":"exact"}],"termid":"MONDO:0018962","xrefs":{"Monarch":{"xref_id":"0018962"}}}


id: PBO:0054326
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1719","termid":"PBO:0054326"}


id: PBO:0040240
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"activating transcription factor 7 interacting protein 2","termid":"PBO:0040240"}


id: MONDO:0016998
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete complex chromosomal rearrangement (obsolete MONDO:0016998)","secondary_identifiers":["Orphanet:263708"],"termid":"MONDO:0016998","xrefs":{"Monarch":{"xref_id":"0016998"}}}


id: PBO:0069289
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 545, pseudogene","termid":"PBO:0069289"}


id: GO:0004110
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 11-deoxycorticosterone = 20-hydroxy-3-oxopregn-4-en-21-al.","definition_xrefs":["RHEA:17861","EC:5.3.1.21"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular oxidoreductase activity, interconverting aldoses and ketoses","termid":"GO:0016861"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016853","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"corticosteroid side-chain-isomerase activity","secondary_identifiers":["MetaCyc:CORTICOSTEROID-SIDE-CHAIN-ISOMERASE-RXN","KEGG_REACTION:R04165"],"synonyms":[{"name":"11-deoxycorticosterone aldose-ketose-isomerase activity","type":"related"},{"name":"11-deoxycorticosterone ketol-isomerase activity","type":"related"}],"termid":"GO:0004110"}


id: GO:0003339
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of the transition where a mesenchymal cell establishes apical/basolateral polarity,forms intercellular adhesive junctions, synthesizes basement membrane components and becomes an epithelial cell that will contribute to the shaping of the metanephros.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of epithelial cell differentiation involved in kidney development","termid":"GO:2000696"},{"relation_name":"regulates","term_name":"mesenchymal to epithelial transition involved in metanephros morphogenesis","termid":"GO:0003337"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis","termid":"GO:0003339"}


id: MONDO:0021202
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A otitis media (disease) with a basis in a pathological type I hypersensitivity reaction.","definition_xrefs":["MONDO:patterns/allergic_form_of_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"allergic disease","termid":"MONDO:0005271"},{"relation_name":"is_a","term_name":"otitis media","termid":"MONDO:0005441"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"allergic otitis media","secondary_identifiers":["SCTID:26169004","UMLS:C0271447","MEDGEN:543352"],"synonyms":[{"name":"allergic form of otitis media (disease)","type":"exact"},{"name":"allergic otitis media (disease)","type":"exact"}],"termid":"MONDO:0021202","xrefs":{"Monarch":{"xref_id":"0021202"}}}


id: PBO:0066206
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein 20","termid":"PBO:0066206"}


id: MONDO:0011425
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A dilated cardiomyopathy that has material basis in variation in the chromosome region 2q14-q22.","definition_xrefs":["DOID:0110429","PMID:10486326"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial isolated dilated cardiomyopathy","termid":"MONDO:0700335"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"dilated cardiomyopathy 1H","secondary_identifiers":["GARD:15365","MESH:C536277","UMLS:C1858591","MEDGEN:348980","OMIM:604288"],"synonyms":[{"name":"CMD1H","type":"exact"},{"name":"cardiomyopathy, dilated, 1H","type":"related"},{"name":"cardiomyopathy, dilated, with conduction defect","type":"related"},{"name":"dilated cardiomyopathy type 1H","type":"exact"},{"name":"dilated cardiomyopathy with conduction defect","type":"exact"}],"termid":"MONDO:0011425","xrefs":{"Monarch":{"xref_id":"0011425"}}}


id: GO:1990446
data:
  {"annotated_genes":["SJAG_02558","SJAG_04914"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71996,115830],"is_not":false,"summary":null,"term":"GO:1990446"}]},"cv_name":"molecular_function","definition":"Binding to a U1 small nuclear ribonucleoprotein particle.","definition_xrefs":["PMID:14713954"],"direct_ancestors":[{"relation_name":"is_a","term_name":"snRNP binding","termid":"GO:0070990"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02558":null,"SJAG_04914":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"U1 snRNP binding","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:1990446","terms_by_termid":{"GO:1990446":null}}


id: PBO:0027705
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_positive_regulation_of_ATPase_activity","termid":"PBO:0027705"}


id: FYPO:0005251
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to tellurite (TeO3(2-)) ions. Cells stop growing (and may die) at a concentration of tellurite ions that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002683"}],"interesting_parent_ids":["FYPO:0002683","FYPO:0001985","FYPO:0005447","FYPO:0000003","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to tellurite","synonyms":[{"name":"hypersensitive to tellurite","type":"exact"},{"name":"sensitive to tellurite during mitotic cell cycle","type":"related"},{"name":"sensitive to tellurite during vegetative growth","type":"exact"},{"name":"sensitive to tellurite ions","type":"exact"}],"termid":"FYPO:0005251"}


id: GO:0102886
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = alpha-chamigrene + diphosphoric acid.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete alpha-chamigrene synthase activity (obsolete GO:0102886)","termid":"GO:0102886"}


id: PBO:0108510
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rpd3L and NuA4 histone acetyltransferase complex ING family subunit Png1","termid":"PBO:0108510"}


id: PBO:0080574
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat domain 1","termid":"PBO:0080574"}


id: GO:0000767
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The change in form (cell shape and size) that occurs during sexual reproduction in order to facilitate direct contact between the compatible mating types.","definition_xrefs":["GOC:elh"],"gene_count":0,"genotype_count":0,"name":"obsolete cell morphogenesis involved in conjugation (obsolete GO:0000767)","termid":"GO:0000767"}


id: PBO:0045340
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"deoxyhypusine hydroxylase","termid":"PBO:0045340"}


id: GO:0020003
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Membrane-bounded vacuole within a host cell in which a symbiont organism resides. The vacuole membrane is derived from both the host and symbiont.","definition_xrefs":["GOC:jl","GOC:mb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"symbiont-containing vacuole","synonyms":[{"name":"SCV","type":"exact"},{"name":"Salmonella-containing vacuole","type":"narrow"},{"name":"bacterium-containing vacuole","type":"narrow"},{"name":"parasitophorous vacuole","type":"exact"},{"name":"pathogen-occupied vacuole","type":"narrow"}],"termid":"GO:0020003"}


id: PBO:0088744
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane OPT oligopeptide transmembrane transporter family Isp4","termid":"PBO:0088744"}


id: GO:1990475
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A synaptic vesicle belonging to the pool that repopulate vacancies within the readily releasable pool (RRP) of synaptic vesicles, and require more significant stimuli than the RRP in order to release neurotransmitter; about 10-15% of the total number of synaptic vesicles at a resting terminal bouton are in this state.","definition_xrefs":["GOC:pad","PMID:22745285"],"direct_ancestors":[{"relation_name":"is_a","term_name":"synaptic vesicle","termid":"GO:0008021"},{"relation_name":"part_of","term_name":"postsynapse","termid":"GO:0098794"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0031410","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"synaptic vesicle, recycling pool","synonyms":[{"name":"recycling pool of synaptic vesicles","type":"exact"}],"termid":"GO:1990475"}


id: PBO:0058636
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6768","termid":"PBO:0058636"}


id: GO:0052504
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of callose deposition by the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation by organism of defense-related symbiont callose deposition (obsolete GO:0052504)","synonyms":[{"name":"induction by organism of defense-related papilla formation in symbiont","type":"narrow"},{"name":"induction by organism of defense-related symbiont callose deposition","type":"narrow"},{"name":"positive regulation by organism of defense-related papilla formation in symbiont","type":"exact"},{"name":"positive regulation by organism of defense-related symbiont callose deposition","type":"exact"}],"termid":"GO:0052504"}


id: PBO:0055154
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2573","termid":"PBO:0055154"}


id: PBO:0030346
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-incomplete,_unequal_mitotic_sister_chromatid_segregation,_with_unseparated_DNA","termid":"PBO:0030346"}


id: PBO:0050882
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IDI2 antisense RNA 1","termid":"PBO:0050882"}


id: GO:0072542
data:
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id: GO:0047768
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 3-carboxy-2,5-dihydro-5-oxofuran-2-acetate = 3-carboxy-cis,cis-muconate.","definition_xrefs":["RHEA:14977","EC:5.5.1.5"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclase activity","termid":"GO:0009975"},{"relation_name":"is_a","term_name":"intramolecular lyase activity","termid":"GO:0016872"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0009975"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016853","GO:0003674","GO:0009975","GO:0003824"],"is_obsolete":false,"name":"carboxy-cis,cis-muconate cyclase activity","secondary_identifiers":["KEGG_REACTION:R03308","MetaCyc:CARBOXY-CISCIS-MUCONATE-CYCLASE-RXN"],"synonyms":[{"name":"3-carboxy-2,5-dihydro-5-oxofuran-2-acetate lyase (decyclizing)","type":"related"},{"name":"3-carboxy-cis,cis-muconate lactonizing enzyme activity","type":"related"},{"name":"3-carboxymuconate cyclase activity","type":"related"}],"termid":"GO:0047768"}


id: MONDO:0030970
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"immunodeficiency disease","termid":"MONDO:0021094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"immunodeficiency 106, susceptibility to viral infections","secondary_identifiers":["MEDGEN:1804672","UMLS:C5677009","OMIM:619935"],"synonyms":[{"name":"IFNAR1 deficiency","type":"exact"},{"name":"IMD106","type":"exact"},{"name":"immunodeficiency 106, susceptibility to viral infections","type":"exact"}],"termid":"MONDO:0030970","xrefs":{"Monarch":{"xref_id":"0030970"}}}


id: FYECO:0000032
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which chloride ions were added to the assay buffer in excess compared to standard assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"+ ions","termid":"FYECO:0000030"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ Cl ions","synonyms":[{"name":"chloride ions added","type":"exact"}],"termid":"FYECO:0000032"}


id: GO:0008104
data:
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id: PBO:0060275
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id: MONDO:0018825
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id: PBO:0029959
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id: PBO:0004202
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id: GO:0008373
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id: GO:0099068
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id: PBO:0034763
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id: GO:0014747
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id: PBO:0058893
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 11400","termid":"PBO:0058893"}


id: PBO:0069045
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 290, pseudogene","termid":"PBO:0069045"}


id: PBO:0048921
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id: MONDO:0019874
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Distal trisomy 7p is a rare chromosomal anomaly syndrome, resulting from the partial duplication of the short arm of chromosome 7, with highly variable phenotype typically characterized by severe to profound psychomotor delay, intellectual disability, dysmorphic features (incl. dolichocephaly, microbrachycephaly, high and/or broad forehead, large anterior fontanel, hypertelorism, downslanting palpebral fissures, low-set, dysplastic ears, low, broad and prominent nasal bridge, abnormal palate, micro-/retrognathia), and hypotonia. Cardiovascular, gastrointestinal, skeletal and urogenital anomalies have commonly been reported.","definition_xrefs":["Orphanet:96074"],"direct_ancestors":[{"relation_name":"is_a","term_name":"partial duplication of the short arm of chromosome 7","termid":"MONDO:0016944"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"distal trisomy 7p","secondary_identifiers":["SCTID:763276000","MEDGEN:1641655","UMLS:C4706364","GARD:19307"],"synonyms":[{"name":"distal duplication 7p","type":"exact"},{"name":"distal trisomy type 7p","type":"exact"},{"name":"telomeric duplication 7p","type":"exact"},{"name":"trisomy 7pter","type":"exact"}],"termid":"MONDO:0019874","xrefs":{"Monarch":{"xref_id":"0019874"}}}


id: GO:1902122
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id: GO:0009748
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals mediated by hexose and independent of hexokinase.","definition_xrefs":["GOC:mah","GOC:sm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexose mediated signaling","termid":"GO:0009757"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"hexokinase-independent signaling","synonyms":[{"name":"hexokinase-independent signalling","type":"exact"}],"termid":"GO:0009748"}


id: GO:0004327
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: formaldehyde + glutathione + NAD+ = S-formylglutathione + NADH + H+.","definition_xrefs":["EC:1.2.1.1"],"gene_count":0,"genotype_count":0,"name":"obsolete formaldehyde dehydrogenase (glutathione) activity (obsolete GO:0004327)","synonyms":[{"name":"formaldehyde dehydrogenase (glutathione) activity","type":"exact"}],"termid":"GO:0004327"}


id: GO:0070976
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a Toll-Interleukin receptor (TIR) domain of a protein. The TIR domain is an intracellular 200 residue domain that is found in the Toll protein, the interleukin-1 receptor (IL-1R), and MyD88; it contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components.","definition_xrefs":["GOC:mah","InterPro:IPR000157"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein domain specific binding","termid":"GO:0019904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"TIR domain binding","synonyms":[{"name":"Toll-Interleukin receptor domain binding","type":"exact"}],"termid":"GO:0070976"}


id: PBO:0072338
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S26 pseudogene 24","termid":"PBO:0072338"}


id: PBO:0036095
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-mislocalized_eMTOC","termid":"PBO:0036095"}


id: GO:1904429
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of t-circle formation.","definition_xrefs":["GOC:BHF","GOC:BHF_telomere","GOC:TermGenie","PMID:22579284","GO_REF:0000058","GOC:nc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of telomere maintenance","termid":"GO:0032204"},{"relation_name":"is_a","term_name":"regulation of cellular component biogenesis","termid":"GO:0044087"},{"relation_name":"regulates","term_name":"t-circle formation","termid":"GO:0090656"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0032200"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0006259","GO:0044085","GO:0032200"],"is_obsolete":false,"name":"regulation of t-circle formation","synonyms":[{"name":"regulation of telomeric circle formation","type":"exact"}],"termid":"GO:1904429"}


id: PBO:0003439
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carboxypeptidase (predicted)","termid":"PBO:0003439"}


id: MONDO:0001960
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Alpers syndrome (obsolete MONDO:0001960)","termid":"MONDO:0001960","xrefs":{"Monarch":{"xref_id":"0001960"}}}


id: PBO:0090549
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribonuclease H superfamily protein","termid":"PBO:0090549"}


id: PR:O59669
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A zinc finger HIT domain-containing protein 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03105","PANTHER:PTHR13093:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SWR1 complex subunit vps71 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC29A3.05","secondary_identifiers":["UniProtKB:O59669"],"synonyms":[{"name":"Spom972h-ZNHIT1","type":"exact"}],"termid":"PR:O59669"}


id: PBO:0077995
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha constant","termid":"PBO:0077995"}


id: MONDO:0001851
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"lacrimal apparatus disorder","termid":"MONDO:0001854"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"primary lacrimal atrophy","secondary_identifiers":["ICD9:375.13","MEDGEN:509859","UMLS:C0155229","SCTID:17093002","DOID:1399"],"termid":"MONDO:0001851","xrefs":{"Monarch":{"xref_id":"0001851"}}}


id: GO:0021522
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which neuroepithelial cells in the ventral neural tube acquire specialized structural and/or functional features of motor neurons. Motor neurons innervate an effector (muscle or glandular) tissue and are responsible for transmission of motor impulses from the brain to the periphery. Differentiation includes the processes involved in commitment of a cell to a specific fate.","definition_xrefs":["GOC:cls","GO_REF:0000021","GOC:dgh","GOC:dph","GOC:jid","PMID:11262869"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation in spinal cord","termid":"GO:0021515"},{"relation_name":"is_a","term_name":"central nervous system neuron differentiation","termid":"GO:0021953"},{"relation_name":"part_of","term_name":"ventral spinal cord development","termid":"GO:0021517"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"spinal cord motor neuron differentiation","termid":"GO:0021522"}


id: GO:0032463
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of protein homooligomerization.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein oligomerization","termid":"GO:0032460"},{"relation_name":"is_a","term_name":"regulation of protein homooligomerization","termid":"GO:0032462"},{"relation_name":"negatively_regulates","term_name":"protein homooligomerization","termid":"GO:0051260"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"negatively_regulates","termid":"GO:0065003"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0044085","GO:0065003","GO:0008150"],"is_obsolete":false,"name":"negative regulation of protein homooligomerization","synonyms":[{"name":"down regulation of protein homooligomerization","type":"exact"},{"name":"down-regulation of protein homooligomerization","type":"exact"},{"name":"downregulation of protein homooligomerization","type":"exact"},{"name":"inhibition of protein homooligomerization","type":"narrow"}],"termid":"GO:0032463"}


id: FYPO:0005813
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to one or both ends of a microtubule is normal (i.e. indistinguishable from wild type) during interphase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to microtubule cytoskeleton during mitotic interphase","termid":"FYPO:0003185"},{"relation_name":"is_a","term_name":"normal intracellular protein transport during vegetative growth","termid":"FYPO:0005397"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0001312","FYPO:0000257","FYPO:0001320"],"is_obsolete":false,"name":"normal protein localization to microtubule end during mitotic interphase","synonyms":[{"name":"normal protein localisation to microtubule end during mitotic interphase","type":"exact"},{"name":"normal protein localization to microtubule end during interphase during vegetative growth","type":"exact"},{"name":"normal protein localization to microtubule end during interphase of mitotic cell cycle","type":"exact"}],"termid":"FYPO:0005813"}


id: GO:0044216
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A cell of a secondary organism with which the first organism is interacting.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete other organism cell (obsolete GO:0044216)","termid":"GO:0044216"}


id: GO:0035853
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A cellular protein complex localization that acts on a chromosome passenger complex; as a result, the complex is transported to, or maintained in, a specific location at the spindle midzone. A chromosome passenger complex is a protein complex that contains the BIR-domain-containing protein Survivin, Aurora B kinase, INCENP and Borealin, and coordinates various events based on its location to different structures during the course of mitosis. The spindle midzone is the area in the center of the spindle where the spindle microtubules from opposite poles overlap.","definition_xrefs":["GOC:vw","GOC:mah","PMID:15296749"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex localization","termid":"GO:0031503"},{"relation_name":"is_a","term_name":"protein localization to cytoskeleton","termid":"GO:0044380"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"chromosome passenger complex localization to spindle midzone","synonyms":[{"name":"CPC complex localization to spindle midzone","type":"exact"},{"name":"CPC localization to spindle midzone","type":"exact"},{"name":"chromosomal passenger complex localization to spindle midzone","type":"exact"},{"name":"chromosome passenger complex localisation to spindle midzone","type":"exact"},{"name":"chromosome passenger complex localization to central spindle","type":"exact"},{"name":"chromosome passenger complex localization to spindle equator","type":"exact"}],"termid":"GO:0035853"}


id: GO:0007301
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Assembly of the intercellular bridges that connect the germ-line cells of a female cyst.","definition_xrefs":["ISBN:0879694238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"germline ring canal formation","termid":"GO:0030725"},{"relation_name":"part_of","term_name":"germarium-derived egg chamber formation","termid":"GO:0007293"},{"relation_name":"part_of","term_name":"ovarian nurse cell to oocyte transport","termid":"GO:0007300"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"female germline ring canal formation","synonyms":[{"name":"nurse cell ring canal formation","type":"narrow"},{"name":"ovarian ring canal formation","type":"narrow"}],"termid":"GO:0007301"}


id: PBO:0069132
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 382, pseudogene","termid":"PBO:0069132"}


id: GO:0031375
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. A fatty acid synthase complex in which each polypeptide chain catalyzes a single activity.","definition_xrefs":["ISBN:0471331309","PMID:12957385","ISBN:0716720094","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete type II fatty acid synthase complex (obsolete GO:0031375)","synonyms":[{"name":"type II FAS","type":"exact"},{"name":"type II FAS complex","type":"exact"},{"name":"type II fatty acid synthase","type":"exact"},{"name":"type II fatty acid synthase complex","type":"exact"}],"termid":"GO:0031375"}


id: GO:0071271
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of 1-butanol, an alkyl primary alcohol with the formula C4H10O.","definition_xrefs":["GOC:mah","GOC:ecd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary alcohol biosynthetic process","termid":"GO:0034309"},{"relation_name":"is_a","term_name":"1-butanol metabolic process","termid":"GO:0071270"},{"relation_name":"is_a","term_name":"fatty alcohol biosynthetic process","termid":"GO:1903175"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"1-butanol biosynthetic process","synonyms":[{"name":"1-butanol anabolism","type":"exact"},{"name":"1-butanol biosynthesis","type":"exact"},{"name":"1-butanol formation","type":"exact"},{"name":"1-butanol synthesis","type":"exact"},{"name":"butan-1-ol biosynthetic process","type":"exact"},{"name":"butanol biosynthetic process","type":"broad"}],"termid":"GO:0071271"}


id: SO:0000203
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Messenger RNA sequences that are untranslated and lie five prime or three prime to sequences which are translated.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA_region","termid":"SO:0000836"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UTR","synonyms":[{"name":"untranslated region","type":"exact"}],"termid":"SO:0000203"}


id: MONDO:0000804
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A allergy involving a Litopenaeus schmitti.","definition_xrefs":["MONDO:patterns/allergy"],"gene_count":0,"genotype_count":0,"name":"obsolete white shrimp allergy (obsolete MONDO:0000804)","secondary_identifiers":["DOID:0060529"],"synonyms":[{"name":"Litopenaeus schmitti allergic disease","type":"exact"},{"name":"Litopenaeus schmitti caused allergic disease","type":"exact"},{"name":"Litopenaeus vannamei allergy","type":"exact"},{"name":"allergy of Litopenaeus schmitti","type":"exact"}],"termid":"MONDO:0000804","xrefs":{"Monarch":{"xref_id":"0000804"}}}


id: PBO:0063369
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proprotein convertase subtilisin/kexin type 9","termid":"PBO:0063369"}


id: PATO:0002478
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's being marked by narrow lines or grooves, usually parallel, that are oriented transversely relative to the long axis of the bearer.","definition_xrefs":["PATOC:DS"],"direct_ancestors":[{"relation_name":"is_a","term_name":"striated","termid":"PATO:0001410"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transversely striated","termid":"PATO:0002478"}


id: PBO:0018291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit (predicted)","termid":"PBO:0018291"}


id: FYPO:0006881
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a phytoceramide measured in a cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased level of substance in cell during vegetative growth","termid":"FYPO:0001329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased cellular phytoceramide level","synonyms":[{"name":"decreased cellular phytoceramide level during mitotic cell cycle","type":"related"},{"name":"decreased cellular phytoceramide level during vegetative growth","type":"exact"},{"name":"decreased phytoceramide accumulation","type":"related"},{"name":"reduced cellular phytoceramide level","type":"exact"}],"termid":"FYPO:0006881"}


id: MONDO:0022094
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"excluded_subClassOf","term_name":"intellectual disability","termid":"MONDO:0001071"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cartwright Nelson Fryns syndrome","secondary_identifiers":["MEDGEN:443968","UMLS:C2931062","MESH:C535917"],"synonyms":[{"name":"Growth retardation, severe intellectual disability, acral limb deficiencies with poorly keratinized nails","type":"related"},{"name":"Growth retardation, severe mental retardation, acral limb deficiencies with poorly keratinized nails","type":"related"}],"termid":"MONDO:0022094","xrefs":{"Monarch":{"xref_id":"0022094"}}}


id: FYPO:0005595
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of a ceramide measured in a cell is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal level of substance in cell during vegetative growth","termid":"FYPO:0001316"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002","FYPO:0001312","FYPO:0001320"],"is_obsolete":false,"name":"normal cellular ceramide level","synonyms":[{"name":"normal cellular ceramide accumulation","type":"related"},{"name":"normal cellular ceramide level during mitotic cell cycle","type":"related"},{"name":"normal cellular ceramide level during vegetative growth","type":"exact"}],"termid":"FYPO:0005595"}


id: GO:0071817
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that contains the proteins MMS19, MIP18 and XPD, localizes to mitotic spindle during mitosis, and is required for proper chromosome segregation.","definition_xrefs":["GOC:sp","PMID:20797633"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"spindle","termid":"GO:0005819"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0015630"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0015630"],"is_obsolete":false,"name":"MMXD complex","synonyms":[{"name":"MMS19-MIP18-XPD complex","type":"exact"}],"termid":"GO:0071817"}


id: GO:0052890
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a flavin.","definition_xrefs":["EC:1.3.8.-"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-CH group of donors","termid":"GO:0016627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor","termid":"GO:0052890"}


id: FYPO:0000622
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which progression through the mitotic cell cycle is arrested in telophase under conditions where arrest does not normally occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell cycle arrest in mitotic M phase","termid":"FYPO:0000608"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0000631","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"abnormal cell cycle arrest in mitotic telophase","synonyms":[{"name":"abnormal cell cycle arrest in mitotic telophase during vegetative growth","type":"exact"},{"name":"abnormal cell cycle arrest in telophase during mitotic cell cycle","type":"exact"},{"name":"abnormal mitotic cell cycle arrest in telophase","type":"exact"},{"name":"mitotic cell cycle progression in telophase: arrested","type":"related"}],"termid":"FYPO:0000622"}


id: PBO:0017649
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital disorders of glygosylation","termid":"PBO:0017649"}


id: PBO:0038379
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-occurent_part_of","termid":"PBO:0038379"}


id: PBO:0088387
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase activating protein, Tsc2 paralog","termid":"PBO:0088387"}


id: PBO:0030057
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_minichromosome_loss_during_vegetative_growth","termid":"PBO:0030057"}


id: PBO:0041043
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BRCA1/BRCA2-containing complex subunit 3 pseudogene 1","termid":"PBO:0041043"}


id: GO:0007015
data:
  {"annotated_genes":["SJAG_01384","SJAG_01388","SJAG_04100","SJAG_00938","SJAG_03011","SJAG_04522","SJAG_04172","SJAG_01268","SJAG_04703","SJAG_03088","SJAG_01964","SJAG_00279","SJAG_01894","SJAG_04982","SJAG_02228","SJAG_04624","SJAG_03380","SJAG_04479","SJAG_00970","SJAG_02864","SJAG_01732","SJAG_00521","SJAG_04621","SJAG_04498","SJAG_03455","SJAG_02566","SJAG_02075","SJAG_03025","SJAG_02245","SJAG_03086","SJAG_02700","SJAG_00677","SJAG_01943","SJAG_01993"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[107486],"is_not":false,"summary":null,"term":"GO:0007015"},{"annotations":[91148],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051764"},{"annotations":[101745,105213,92499,89963,99791,107084,100712,101563],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090135"},{"annotations":[95667,77795,76706,73200,77337,78086,79032],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051017"},{"annotations":[101527],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061572"},{"annotations":[118160],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061573"},{"annotations":[75127,71844],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030042"},{"annotations":[73201],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0051639"},{"annotations":[66009,67853,95668,100713,99597],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0030041"},{"annotations":[91190],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0045010"},{"annotations":[99902,110072,91150,100160],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071520"},{"annotations":[109091,81544,80771,78248,80080,79570,99792,76650,104639,81824],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034314"},{"annotations":[80929,77311,81986,94165],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0051016"},{"annotations":[110074,118162],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070649"},{"annotations":[59220],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0110009"},{"annotations":[79192],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903479"},{"annotations":[76264],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0034316"},{"annotations":[109546],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0032231"},{"annotations":[79149,81229,68616,69516,78505],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0030833"}]},"cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments. Includes processes that control the spatial distribution of actin filaments, such as organizing filaments into meshworks, bundles, or other structures, as by cross-linking.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"supramolecular fiber organization","termid":"GO:0097435"},{"relation_name":"part_of","term_name":"actin cytoskeleton organization","termid":"GO:0030036"}],"gene_count":34,"genes_by_uniquename":{"SJAG_00279":null,"SJAG_00521":null,"SJAG_00677":null,"SJAG_00938":null,"SJAG_00970":null,"SJAG_01268":null,"SJAG_01384":null,"SJAG_01388":null,"SJAG_01732":null,"SJAG_01894":null,"SJAG_01943":null,"SJAG_01964":null,"SJAG_01993":null,"SJAG_02075":null,"SJAG_02228":null,"SJAG_02245":null,"SJAG_02566":null,"SJAG_02700":null,"SJAG_02864":null,"SJAG_03011":null,"SJAG_03025":null,"SJAG_03086":null,"SJAG_03088":null,"SJAG_03380":null,"SJAG_03455":null,"SJAG_04100":null,"SJAG_04172":null,"SJAG_04479":null,"SJAG_04498":null,"SJAG_04522":null,"SJAG_04621":null,"SJAG_04624":null,"SJAG_04703":null,"SJAG_04982":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0030036"},{"rel_name":"part_of","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007010","GO:0008150","GO:0030036"],"is_obsolete":false,"name":"actin filament organization","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"actin filament organisation","type":"exact"},{"name":"regulation of actin filament localization","type":"narrow"}],"termid":"GO:0007015","terms_by_termid":{"GO:0007015":null,"GO:0030041":null,"GO:0030042":null,"GO:0030833":null,"GO:0032231":null,"GO:0034314":null,"GO:0034316":null,"GO:0045010":null,"GO:0051016":null,"GO:0051017":null,"GO:0051639":null,"GO:0051764":null,"GO:0061572":null,"GO:0061573":null,"GO:0070649":null,"GO:0071520":null,"GO:0090135":null,"GO:0110009":null,"GO:1903479":null}}


id: GO:2000051
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of non-canonical Wnt signaling pathway.","definition_xrefs":["GOC:obol","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of Wnt signaling pathway","termid":"GO:0030178"},{"relation_name":"is_a","term_name":"regulation of non-canonical Wnt signaling pathway","termid":"GO:2000050"},{"relation_name":"negatively_regulates","term_name":"non-canonical Wnt signaling pathway","termid":"GO:0035567"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of non-canonical Wnt signaling pathway","synonyms":[{"name":"negative regulation of beta-catenin-independent Wnt receptor signaling pathway","type":"exact"},{"name":"negative regulation of non-canonical Wnt receptor signaling pathway","type":"exact"},{"name":"negative regulation of non-canonical Wnt receptor signalling pathway","type":"exact"},{"name":"negative regulation of non-canonical Wnt-activated signaling pathway","type":"exact"}],"termid":"GO:2000051"}


id: GO:0001771
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of an area of close contact between a lymphocyte (T-, B-, or natural killer cell) and a target cell through the clustering of particular signaling and adhesion molecules and their associated membrane rafts on both the lymphocyte and target cell, which facilitates activation of the lymphocyte, transfer of membrane from the target cell to the lymphocyte, and in some situations killing of the target cell through release of secretory granules and/or death-pathway ligand-receptor interaction.","definition_xrefs":["PMID:11244041","GOC:mgi_curators","PMID:11376330"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell recognition","termid":"GO:0009988"},{"relation_name":"part_of","term_name":"lymphocyte activation","termid":"GO:0046649"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"immunological synapse formation","synonyms":[{"name":"formation of immunological synapse","type":"exact"}],"termid":"GO:0001771"}


id: PBO:0084263
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Integral ER membrane protein with type-III transmembrane domains; required for maintenance of ER zinc homeostasis; required for post-translational SRP-independent protein translocation into the ER; necessary for efficient targeting of Trm1p tRNA methyltransferase to the inner nuclear membrane; mutations cause defects in cortical ER morphology in both the mother and daughter cells","termid":"PBO:0084263"}


id: MONDO:0010773
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"diabetes mellitus","termid":"MONDO:0005015"},{"relation_name":"is_a","term_name":"inborn mitochondrial myopathy","termid":"MONDO:0009637"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005336","MONDO:0005066","MONDO:0004069"],"is_obsolete":false,"name":"mitochondrial myopathy with diabetes","secondary_identifiers":["GARD:3881","Orphanet:2596","UMLS:C1839028","MEDGEN:333236","MESH:C564026","OMIM:500002"],"synonyms":[{"name":"mitochondrial myopathy with diabetes","type":"exact"},{"name":"mitochondrial myopathy, lipid type","type":"exact"},{"name":"myopathy and diabetes mellitus","type":"exact"}],"termid":"MONDO:0010773","xrefs":{"Monarch":{"xref_id":"0010773"}}}


id: SO:1000036
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A continuous nucleotide sequence is inverted in the same position.","definition_xrefs":["EBI:www.ebi.ac.uk/mutations/recommendations/mutevent.html"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sequence_alteration","termid":"SO:0001059"},{"relation_name":"is_a","term_name":"biological_region","termid":"SO:0001411"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inversion","secondary_identifiers":["loinc:LA6689-9"],"synonyms":[{"name":"inversion","type":"exact"}],"termid":"SO:1000036"}


id: MONDO:0004070
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete gemistocytic astrocytoma (obsolete MONDO:0004070)","termid":"MONDO:0004070","xrefs":{"Monarch":{"xref_id":"0004070"}}}


id: PBO:0090634
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"diacylglycerol cholinephosphotransferase/ diacylglycerol ethanolaminesphotransferase Ept1","termid":"PBO:0090634"}


id: PBO:0040651
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BBSome interacting protein 1","termid":"PBO:0040651"}


id: GO:0048821
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of an erythrocyte over time, from its formation to the mature structure.","definition_xrefs":["GOC:devbiol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myeloid cell development","termid":"GO:0061515"},{"relation_name":"part_of","term_name":"erythrocyte differentiation","termid":"GO:0030218"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"erythrocyte development","synonyms":[{"name":"RBC development","type":"exact"},{"name":"red blood cell development","type":"exact"}],"termid":"GO:0048821"}


id: FYPO:0003216
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which chromatin silencing at ribosomal DNA repeat regions is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromatin silencing at rDNA","termid":"FYPO:0000206"},{"relation_name":"is_a","term_name":"decreased chromatin silencing","termid":"FYPO:0002353"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0006551"],"is_obsolete":false,"name":"decreased chromatin silencing at rDNA","synonyms":[{"name":"decreased chromatin silencing at rDNA during mitotic cell cycle","type":"related"},{"name":"decreased chromatin silencing at rDNA during vegetative growth","type":"exact"},{"name":"decreased chromatin silencing at ribosomal DNA","type":"exact"},{"name":"reduced chromatin silencing at rDNA","type":"exact"}],"termid":"FYPO:0003216"}


id: GO:0007081
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete mitotic sister-chromatid adhesion release (obsolete GO:0007081)","synonyms":[{"name":"mitotic sister-chromatid adhesion release","type":"exact"}],"termid":"GO:0007081"}


id: MONDO:0015615
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare genetic gastroenterological disease (obsolete MONDO:0015615)","secondary_identifiers":["Orphanet:165652"],"synonyms":[{"name":"rare genetic gastrointestinal system disease","type":"exact"}],"termid":"MONDO:0015615","xrefs":{"Monarch":{"xref_id":"0015615"}}}


id: GO:0046342
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of CDP-diacylglycerol, CDP-1,2-diacylglycerol, a substance composed of diacylglycerol in glycosidic linkage with cytidine diphosphate.","definition_xrefs":["PMID:6147353"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CDP-diacylglycerol metabolic process","termid":"GO:0046341"},{"relation_name":"is_a","term_name":"glycerophospholipid catabolic process","termid":"GO:0046475"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"CDP-diacylglycerol catabolic process","synonyms":[{"name":"CDP-diacylglycerol breakdown","type":"exact"},{"name":"CDP-diacylglycerol catabolism","type":"exact"},{"name":"CDP-diacylglycerol degradation","type":"exact"}],"termid":"GO:0046342"}


id: MONDO:0015069
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A well differentiated, low or intermediate grade tumor with neuroendocrine differentiation that arises from the anal canal.","definition_xrefs":["NCIT:C96540"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anal canal neuroendocrine neoplasm","termid":"MONDO:0003504"},{"relation_name":"is_a","term_name":"rectal neuroendocrine tumor","termid":"MONDO:0015068"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992","MONDO:0004335"],"is_obsolete":false,"name":"neuroendocrine tumor of the anal canal","secondary_identifiers":["icd11.foundation:1927831331","GARD:19757","MEDGEN:474482","Orphanet:100082","UMLS:C3272849"],"synonyms":[{"name":"NET of anal canal","type":"exact"},{"name":"NET of the anal canal","type":"exact"},{"name":"anal NET","type":"exact"},{"name":"anal Neuroendocrine tumor","type":"exact"},{"name":"anal Neuroendocrine tumour","type":"exact"},{"name":"anal canal NET","type":"exact"},{"name":"anal canal neuroendocrine neoplasm","type":"broad"},{"name":"anal canal neuroendocrine tumor","type":"exact"},{"name":"anal canal neuroendocrine tumour","type":"exact"},{"name":"anal canal well differentiated tumor","type":"exact"},{"name":"anal canal well differentiated tumor/carcinoma","type":"exact"},{"name":"anal canal well differentiated tumour","type":"exact"},{"name":"neuroendocrine neoplasm of the anal canal","type":"exact"},{"name":"neuroendocrine tumor of anal canal","type":"related"},{"name":"neuroendocrine tumour of anal canal","type":"related"}],"termid":"MONDO:0015069","xrefs":{"Monarch":{"xref_id":"0015069"}}}


id: GO:0030553
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to cGMP, the nucleotide cyclic GMP (guanosine 3',5'-cyclophosphate).","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclic nucleotide binding","termid":"GO:0030551"},{"relation_name":"is_a","term_name":"guanyl ribonucleotide binding","termid":"GO:0032561"},{"relation_name":"is_a","term_name":"anion binding","termid":"GO:0043168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"cGMP binding","synonyms":[{"name":"3',5' cGMP binding","type":"exact"},{"name":"3',5'-cGMP binding","type":"exact"},{"name":"cyclic GMP binding","type":"exact"}],"termid":"GO:0030553"}


id: FYPO:0000231
data:
  {"alleles_by_uniquename":{"SJAG_01143:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01143","name":"mid1delta","uniquename":"SJAG_01143:allele-1"},"SJAG_03596:allele-1":{"allele_type":"amino_acid_mutation","description":"L264P,P442T","gene_uniquename":"SJAG_03596","name":"cdc15-A","uniquename":"SJAG_03596:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[121214],"is_not":false,"summary":null,"term":"FYPO:0000231"}],"single_locus_phenotype":[{"annotations":[121207],"is_not":false,"summary":null,"term":"FYPO:0000231"}]},"cv_name":"fission_yeast_phenotype","definition":"A cytokinesis phenotype observed in the vegetative growth phase of the life cycle in which myosin filaments are not localized normally within the actomyosin contractile ring.","definition_xrefs":["PMID:19713940","PomBase:mah","GO:2000708"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cytokinesis during vegetative growth","termid":"FYPO:0000032"},{"relation_name":"is_a","term_name":"abnormal actin cytoskeleton organization during vegetative growth","termid":"FYPO:0000801"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01143":null,"SJAG_03596":null},"genotype_count":2,"genotypes_by_uniquename":{"cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"cdc15-A(L264P,P442T aa)","display_uniquename":"cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03596:allele-1","expression":"Not assayed or wild type"}]}]},"cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type__mid1delta":{"display_name":"cdc15-A(L264P,P442T aa) mid1delta","display_uniquename":"cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type__mid1delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_03596:allele-1","expression":"Not assayed or wild type"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_01143:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0004803"},{"rel_name":"is_a","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000631"}],"interesting_parent_ids":["FYPO:0004803","FYPO:0000032","FYPO:0000002","FYPO:0000631","FYPO:0005447","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_01143","SJAG_03596"],"name":"abnormal actomyosin contractile ring myosin filament organization","references_by_uniquename":{"PMID:25866389":null},"single_locus_annotated_genes":["SJAG_03596"],"single_locus_genotype_uniquenames":["cdc15-A-L264P,P442T-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"abnormal actomyosin contractile ring myosin filament organisation","type":"exact"},{"name":"abnormal actomyosin contractile ring myosin filament organization during mitotic cell cycle","type":"related"},{"name":"abnormal actomyosin contractile ring myosin filament organization during vegetative growth","type":"exact"},{"name":"abnormal cytokinetic contractile ring myosin filament organization","type":"exact"},{"name":"abnormal mitotic contractile ring myosin filament organization","type":"exact"},{"name":"cytokinesis defects, contractile ring myosin distribution, defective","type":"related"}],"termid":"FYPO:0000231","terms_by_termid":{"FYECO:0000004":null,"FYECO:0000005":null,"FYECO:0000137":null,"FYPO:0000231":null,"FYPO_EXT:0000001":null}}


id: PBO:0071300
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L26 pseudogene 23","termid":"PBO:0071300"}


id: PBO:0081340
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 140","termid":"PBO:0081340"}


id: PR:Q10305
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A rab GDP dissociation inhibitor beta that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secretory pathway GDP dissociation inhibitor 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22H10.12c","secondary_identifiers":["UniProtKB:Q10305"],"synonyms":[{"name":"SPAC22H10.12c","type":"related"},{"name":"Spom972h-GDI2","type":"exact"},{"name":"sec19","type":"related"}],"termid":"PR:Q10305"}


id: MONDO:0008909
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital disorder of glycosylation, type i/IIx","secondary_identifiers":["OMIM:212067","UMLS:C0349655","MEDGEN:91162","MESH:C562844"],"synonyms":[{"name":"CDG X","type":"related"},{"name":"CDG-X","type":"related"},{"name":"congenital disorder of glycosylation type I/IIX","type":"related"},{"name":"congenital disorder of glycosylation, type i/IIx","type":"exact"}],"termid":"MONDO:0008909","xrefs":{"Monarch":{"xref_id":"0008909"}}}


id: MONDO:0015150
data:
  {"annotated_genes":["SJAG_00199","SJAG_00660","SJAG_03457","SJAG_04110","SJAG_03320","SJAG_00308","SJAG_03866","SJAG_04123","SJAG_04506","SJAG_01854","SJAG_04292","SJAG_00773","SJAG_04537","SJAG_04145","SJAG_02306","SJAG_04757","SJAG_01537"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86835,86834],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014702"},{"annotations":[88804,88803],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014975"},{"annotations":[89070],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030669"},{"annotations":[87253],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014567"},{"annotations":[87467],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009748"},{"annotations":[86994],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010043"},{"annotations":[88125],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012787"},{"annotations":[87101,87100,87102],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014018"},{"annotations":[87099],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014020"},{"annotations":[87459],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014305"},{"annotations":[86931],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014644"},{"annotations":[88304,88305],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011006"},{"annotations":[86915],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014679"},{"annotations":[88558],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012651"},{"annotations":[87856],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030482"},{"annotations":[87900],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030512"}]},"cv_name":"mondo","definition":"A hereditary spastic paraplegia that is part of a larger syndrome.","definition_xrefs":["MONDO:patterns/syndromic"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary spastic paraplegia","termid":"MONDO:0019064"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00199":null,"SJAG_00308":null,"SJAG_00660":null,"SJAG_00773":null,"SJAG_01537":null,"SJAG_01854":null,"SJAG_02306":null,"SJAG_03320":null,"SJAG_03457":null,"SJAG_03866":null,"SJAG_04110":null,"SJAG_04123":null,"SJAG_04145":null,"SJAG_04292":null,"SJAG_04506":null,"SJAG_04537":null,"SJAG_04757":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"complex hereditary spastic paraplegia","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C0393556","Orphanet:102013","MEDGEN:581446","NANDO:1200054","GARD:19823","SCTID:230261006"],"synonyms":[{"name":"Complex HSP","type":"exact"},{"name":"Complex SPG","type":"exact"},{"name":"Complex familial spastic paraplegia","type":"exact"},{"name":"complicated HSP","type":"exact"},{"name":"complicated SPG","type":"exact"},{"name":"complicated familial spastic paraplegia","type":"exact"},{"name":"complicated hereditary spastic paraplegia","type":"exact"},{"name":"syndrome associated with hereditary spastic paraplegia","type":"exact"},{"name":"syndromic hereditary spastic paraplegia","type":"exact"}],"termid":"MONDO:0015150","terms_by_termid":{"MONDO:0009748":null,"MONDO:0010043":null,"MONDO:0011006":null,"MONDO:0012651":null,"MONDO:0012787":null,"MONDO:0014018":null,"MONDO:0014020":null,"MONDO:0014305":null,"MONDO:0014567":null,"MONDO:0014644":null,"MONDO:0014679":null,"MONDO:0014702":null,"MONDO:0014975":null,"MONDO:0030482":null,"MONDO:0030512":null,"MONDO:0030669":null},"xrefs":{"Monarch":{"xref_id":"0015150"}}}


id: PBO:0073079
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"stromal cell derived factor 4","termid":"PBO:0073079"}


id: PATO:0000078
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality of a single process inhering in a bearer by virtue of the bearer's movement or variation characterized by the regular recurrence or alternation of different quantities or conditions.","definition_xrefs":["answers.com:answers.com"],"direct_ancestors":[{"relation_name":"is_a","term_name":"temporal distribution quality","termid":"PATO:0002323"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rhythm quality","termid":"PATO:0000078"}


id: GO:0047358
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: glycoprotein D-mannose + UDP-D-glucose = glycoprotein 6-(D-glucose-1-phospho)-D-mannose + UMP.","definition_xrefs":["EC:2.7.8.19","MetaCyc:2.7.8.19-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, for other substituted phosphate groups","termid":"GO:0016780"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016780"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016780"],"is_obsolete":false,"name":"UDP-glucose-glycoprotein glucose phosphotransferase activity","secondary_identifiers":["RHEA:20181"],"synonyms":[{"name":"Glc-phosphotransferase activity","type":"related"},{"name":"GlcPTase activity","type":"related"},{"name":"UDP-glucose:glycoprotein glucose-1-phosphotransferase activity","type":"related"},{"name":"UDP-glucose:glycoprotein-D-mannose glucosephosphotransferase activity","type":"related"},{"name":"UDPglucose-glycoprotein glucose phosphotransferase activity","type":"related"},{"name":"UDPglucose:glycoprotein-D-mannose glucosephosphotransferase activity","type":"related"},{"name":"uridine diphosphoglucose-glycoprotein glucose-1-phosphotransferase activity","type":"related"}],"termid":"GO:0047358"}


id: PBO:0067032
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 45, pseudogene","termid":"PBO:0067032"}


id: GO:0018360
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The linkage of protein to heme P460 via heme P460-bis-L-cysteine-L-lysine.","definition_xrefs":["RESID:AA0271"],"gene_count":0,"genotype_count":0,"name":"obsolete protein-heme P460 linkage via heme P460-bis-L-cysteine-L-lysine (obsolete GO:0018360)","synonyms":[{"name":"protein-haem P460 linkage via haem P460-bis-L-cysteine-L-lysine","type":"exact"}],"termid":"GO:0018360"}


id: MONDO:0020046
data:
  {"annotated_genes":["SJAG_03862","SJAG_01286"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88598],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011402"},{"annotations":[87360],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0100340"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive cerebellar ataxia","termid":"MONDO:0015244"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01286":null,"SJAG_03862":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0006025"],"is_obsolete":false,"name":"autosomal recessive degenerative and progressive cerebellar ataxia","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5681515","MEDGEN:1842627","Orphanet:98098","GARD:19415"],"termid":"MONDO:0020046","terms_by_termid":{"MONDO:0011402":null,"MONDO:0100340":null},"xrefs":{"Monarch":{"xref_id":"0020046"}}}


id: GO:0140972
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of AIM2 inflammasome complex assembly.","definition_xrefs":["PMID:33467177"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein-containing complex assembly","termid":"GO:0031333"},{"relation_name":"is_a","term_name":"regulation of AIM2 inflammasome complex assembly","termid":"GO:0140971"},{"relation_name":"negatively_regulates","term_name":"AIM2 inflammasome complex assembly","termid":"GO:0140970"},{"relation_name":"part_of","term_name":"negative regulation of inflammasome-mediated signaling pathway","termid":"GO:0141086"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"negatively_regulates","termid":"GO:0065003"},{"rel_name":"regulates","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0065003","GO:0008150","GO:0044085"],"is_obsolete":false,"name":"negative regulation of AIM2 inflammasome complex assembly","termid":"GO:0140972"}


id: PBO:0038768
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin related protein 6","termid":"PBO:0038768"}


id: GO:0141084
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An intracellular signal transduction pathway that starts with a ligand binding to a pattern recognition receptor (PRR), assembly of the inflammasome complex, leading to the activation of CASP1 and inducing an inflammatory response. In some cases, inflammasome-mediated signal transduction can lead to programmed cell death, such as pyroptosis.","definition_xrefs":["PMID:35883561"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytoplasmic pattern recognition receptor signaling pathway","termid":"GO:0002753"},{"relation_name":"part_of","term_name":"inflammatory response","termid":"GO:0006954"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"inflammasome-mediated signaling pathway","synonyms":[{"name":"inflammasome-mediated signal transduction","type":"exact"}],"termid":"GO:0141084"}


id: MONDO:0008932
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"premature centromere division","secondary_identifiers":["OMIM:212790","UMLS:C1859308","MEDGEN:349138"],"synonyms":[{"name":"PCD","type":"exact"},{"name":"X-chromosome centromere peculiarity","type":"related"},{"name":"premature centromere division","type":"exact"}],"termid":"MONDO:0008932","xrefs":{"Monarch":{"xref_id":"0008932"}}}


id: MONDO:0030513
data:
  {"annotated_genes":["SJAG_01942","SJAG_00690"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87902,87903],"is_not":false,"summary":null,"term":"MONDO:0030513"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited dystonia","termid":"MONDO:0044807"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00690":null,"SJAG_01942":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0003441"}],"interesting_parent_ids":["MONDO:0003441"],"is_obsolete":false,"name":"dystonia 33","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1794264","DOID:0060940","OMIM:619687","UMLS:C5562054"],"synonyms":[{"name":"DYT33","type":"exact"}],"termid":"MONDO:0030513","terms_by_termid":{"MONDO:0030513":null},"xrefs":{"Monarch":{"xref_id":"0030513"}}}


id: GO:0002488
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an antigen-presenting cell expresses a peptide antigen of endogenous origin on its cell surface in association with an MHC class Ib protein complex following intracellular transport via an ER pathway. The peptide is typically a fragment of a larger endogenous protein which has been degraded within the cell and becomes associated with the MHC class Ib molecule in the ER. Class Ib here refers to non-classical class I molecules, such as those of the HLA-E gene family.","definition_xrefs":["GOC:add","PMID:15928678"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antigen processing and presentation of endogenous peptide antigen via MHC class Ib","termid":"GO:0002476"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway","synonyms":[{"name":"endogenous peptide antigen processing and presentation via MHC class Ib via ER pathway","type":"exact"}],"termid":"GO:0002488"}


id: GO:1902920
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving poly(hydroxyvalerate).","definition_xrefs":["GOC:mengo_curators","GOC:TermGenie","PMID:21705209","GO_REF:0000068"],"direct_ancestors":[{"relation_name":"is_a","term_name":"poly(hydroxyalkanoate) metabolic process","termid":"GO:1901440"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"poly(hydroxyvalerate) metabolic process","synonyms":[{"name":"poly(hydroxyvalerate) metabolism","type":"exact"}],"termid":"GO:1902920"}


id: PBO:0047261
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 242 member D","termid":"PBO:0047261"}


id: PBO:0031097
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-monopolar_mitotic_spindle","termid":"PBO:0031097"}


id: PBO:0036135
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_histone_acetylation_during_vegetative_growth","termid":"PBO:0036135"}


id: GO:0034103
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of tissue remodeling.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of multicellular organismal process","termid":"GO:0051239"},{"relation_name":"regulates","term_name":"tissue remodeling","termid":"GO:0048771"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of tissue remodeling","synonyms":[{"name":"regulation of tissue remodelling","type":"exact"}],"termid":"GO:0034103"}


id: PBO:0079359
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin alpha 3e","termid":"PBO:0079359"}


id: GO:0044740
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process that negatively regulates the sensory perception of pain in a different organism.","definition_xrefs":["GOC:fj","GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of sensory perception of pain in another organism (obsolete GO:0044740)","synonyms":[{"name":"inhibition of sensory perception of pain in another organism","type":"exact"},{"name":"negative regulation of sensory perception of pain in other organism","type":"exact"}],"termid":"GO:0044740"}


id: PBO:0036250
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fructose-2,6-bisphosphatase, human TIGAR ortholog (predicted)","termid":"PBO:0036250"}


id: GO:0072090
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of mesenchymal stem cells, resulting in the expansion of a stem cell population, that contributes to the shaping of a nephron.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesenchymal stem cell proliferation","termid":"GO:0097168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesenchymal stem cell proliferation involved in nephron morphogenesis","termid":"GO:0072090"}


id: PBO:0079781
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UDP glucuronosyltransferase family 1 member A2, pseudogene","termid":"PBO:0079781"}


id: PBO:0070055
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6atac small nuclear 12, pseudogene","termid":"PBO:0070055"}


id: SO:0000767
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000767 clone_insert_start (obsolete SO:0000767)","termid":"SO:0000767"}


id: PBO:0052261
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysine demethylase 2B","termid":"PBO:0052261"}


id: GO:1902854
data:
  {"annotated_genes":["SJAG_04597"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96261],"is_not":false,"summary":null,"term":"GO:1902854"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of nuclear migration during mitotic telophase.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:23087209"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of nuclear migration along microtubule","termid":"GO:1902840"},{"relation_name":"is_a","term_name":"regulation of nuclear migration during mitotic telophase","termid":"GO:1902852"},{"relation_name":"positively_regulates","term_name":"nuclear migration during mitotic telophase","termid":"GO:0090561"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04597":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of nuclear migration during mitotic telophase","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"activation of nuclear migration during mitotic telophase","type":"narrow"},{"name":"up regulation of nuclear migration during mitotic telophase","type":"exact"},{"name":"up-regulation of nuclear migration during mitotic telophase","type":"exact"},{"name":"upregulation of nuclear migration during mitotic telophase","type":"exact"}],"termid":"GO:1902854","terms_by_termid":{"GO:1902854":null}}


id: GO:0120302
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which an organism changes its pigmentation (lightening in response to a brighter environment or darkening in response to a dimmer environment) in response to a change in light intensity.","definition_xrefs":["PMID:10493760","GOC:cvs","GOC:krc","PMID:32898924","PMID:29239123"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to light intensity","termid":"GO:0009642"},{"relation_name":"is_a","term_name":"regulation of pigmentation","termid":"GO:0120305"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"background adaptation","termid":"GO:0120302"}


id: PATO:0001456
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a bearer by virtue of the bearer's independence on oxygen.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensitivity to oxygen","termid":"PATO:0001454"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anaerobic","termid":"PATO:0001456"}


id: MONDO:0019314
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Cutaneous mastocytoma is a form of cutaneous mastocytosis (CM) generally characterized by the presence of a solitary or multiple hyperpigmented macules, plaques or nodules associated with abnormal accumulation of mast cells in the skin.","definition_xrefs":["Orphanet:79455"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cutaneous mastocytosis","termid":"MONDO:0019023"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"cutaneous mastocytoma","secondary_identifiers":["UMLS:C0343115","icd11.foundation:1853236564","MESH:D054705","GARD:12687","MEDGEN:83357"],"synonyms":[{"name":"cutaneous local mastocytoma","type":"exact"},{"name":"multiple mastocytoma","type":"exact"},{"name":"solitary mastocytoma","type":"exact"}],"termid":"MONDO:0019314","xrefs":{"Monarch":{"xref_id":"0019314"}}}


id: PBO:0047382
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-box protein 16","termid":"PBO:0047382"}


id: PBO:0052782
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 19 pseudogene 6","termid":"PBO:0052782"}


id: MONDO:0021944
data:
  {"annotated_genes":["SJAG_04703","SJAG_02016"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87140],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012196"},{"annotations":[88989],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010378"}]},"cv_name":"mondo","definition":"A hearing disorder characterized by impaired transmission of signals through the auditory nerve, resulting in mild to severe hearing loss and poor speech perception.","definition_xrefs":["NCIT:C116364"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hearing loss disorder","termid":"MONDO:0005365"},{"relation_name":"is_a","term_name":"inherited auditory system disease","termid":"MONDO:0037940"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02016":null,"SJAG_04703":null},"genotype_count":0,"is_obsolete":false,"name":"auditory neuropathy","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:C538268","OMIMPS:609129","SCTID:443805006","UMLS:C1852271","GARD:9274","MEDGEN:338895"],"synonyms":[{"name":"ANSD","type":"exact"},{"name":"auditory dys-synchrony","type":"exact"},{"name":"auditory neuropathy","type":"exact"},{"name":"auditory neuropathy spectrum disorder","type":"exact"},{"name":"familial auditory neuropathy","type":"narrow"},{"name":"progressive auditory neuropathy","type":"narrow"}],"termid":"MONDO:0021944","terms_by_termid":{"MONDO:0010378":null,"MONDO:0012196":null},"xrefs":{"Monarch":{"xref_id":"0021944"}}}


id: PBO:0086227
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that inhibits ATP hydrolysis by the F1F0-ATP synthase; inhibitory function is enhanced by stabilizing proteins Stf1p and Stf2p; has a calmodulin-binding motif and binds calmodulin in vitro; INH1 has a paralog, STF1, that arose from the whole genome duplication","termid":"PBO:0086227"}


id: PBO:0003798
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FHA domain protein Far10 (predicted)","termid":"PBO:0003798"}


id: PBO:0072021
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S8 pseudogene 8","termid":"PBO:0072021"}


id: PBO:0057138
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 219a-1","termid":"PBO:0057138"}


id: GO:0072075
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The biological process whose specific outcome is the progression of a metanephric mesenchyme from an initial condition to its mature state. This process begins with the formation of metanephric mesenchyme and ends with the mature structure. Metanephric mesenchyme is the tissue made up of loosely connected mesenchymal cells in the metanephros.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kidney mesenchyme development","termid":"GO:0072074"},{"relation_name":"part_of","term_name":"metanephros development","termid":"GO:0001656"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric mesenchyme development","termid":"GO:0072075"}


id: PBO:0039951
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ariadne RBR E3 ubiquitin protein ligase 2 pseudogene 1","termid":"PBO:0039951"}


id: MONDO:0007749
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete autosomal recessive infantile hypercalcemia (obsolete MONDO:0007749)","termid":"MONDO:0007749","xrefs":{"Monarch":{"xref_id":"0007749"}}}


id: FYPO:0000504
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cellular process phenotype in which the occurrence of necrotic cell death is decreased. Necrotic cell death is morphologically characterized by a gain in cell volume (oncosis), swelling of organelles, plasma membrane rupture and subsequent loss of intracellular contents.","definition_xrefs":["PomBase:mah","GO:0070265"],"gene_count":0,"genotype_count":0,"name":"obsolete decreased necrotic cell death (obsolete FYPO:0000504)","synonyms":[{"name":"necrotic cell death: decreased","type":"related"},{"name":"reduced necrotic cell death","type":"exact"}],"termid":"FYPO:0000504"}


id: PBO:0067814
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 116","termid":"PBO:0067814"}


id: PBO:0046813
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coagulation factor XIII A chain","termid":"PBO:0046813"}


id: MONDO:0014147
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any neuronal ceroid lipofuscinosis in which the cause of the disease is a mutation in the CTSF gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"adult neuronal ceroid lipofuscinosis","termid":"MONDO:0019260"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002561"},{"rel_name":"is_a","termid":"MONDO:0002039"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0002561","MONDO:0005559","MONDO:0002525","MONDO:0002039","MONDO:0005066"],"is_obsolete":false,"name":"neuronal ceroid lipofuscinosis 13","secondary_identifiers":["GARD:17527","Orphanet:352709","MEDGEN:811566","UMLS:C3715049","DOID:0110727","OMIM:615362"],"synonyms":[{"name":"CLN13","type":"exact"},{"name":"CLN13 disease","type":"related"},{"name":"CTSF neuronal ceroid lipofuscinosis","type":"exact"},{"name":"ceroid lipofuscinosis, neuronal, 13","type":"related"},{"name":"ceroid lipofuscinosis, neuronal, 13 (Kufs type)","type":"exact"},{"name":"ceroid lipofuscinosis, neuronal, 13, Kufs type","type":"related"},{"name":"ceroid lipofuscinosis, neuronal, type 13","type":"exact"},{"name":"neuronal ceroid lipofuscinosis 13 Kufs type","type":"exact"},{"name":"neuronal ceroid lipofuscinosis caused by mutation in CTSF","type":"exact"},{"name":"neuronal ceroid lipofuscinosis type 13","type":"exact"}],"termid":"MONDO:0014147","xrefs":{"Monarch":{"xref_id":"0014147"}}}


id: MOD:00708
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively adds oxygen atoms to a sulfur atom of L-cysteine residue without removing hydrogen atoms.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur oxygenated residue","termid":"MOD:00680"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"sulfur oxygenated L-cysteine","synonyms":[{"name":"SOxyCys","type":"exact"}],"termid":"MOD:00708"}


id: MONDO:0010754
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A syndrome characterized by intellectual deficit, choroideremia, acrokeratosis verruciformis, anhidrosis, and skeletal deformities. It has been observed in a single kindred. The syndrome is transmitted as an X-linked recessive trait and may be caused by a small X-chromosome deletion.","definition_xrefs":["Orphanet:3417"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete acrokeratoderma (obsolete MONDO:0019271)","termid":"MONDO:0019271"},{"relation_name":"excluded_subClassOf","term_name":"X-linked syndromic intellectual disability","termid":"MONDO:0020119"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"van den Bosch syndrome","secondary_identifiers":["MEDGEN:162920","UMLS:C0796192","OMIM:314500","SCTID:733110004","MESH:C563129","GARD:5453"],"synonyms":[{"name":"mental deficiency, choroideremia, acrokeratosis verruciformis,anhidrosis, skeletal deformity","type":"related"},{"name":"van den Bosch syndrome","type":"exact"}],"termid":"MONDO:0010754","xrefs":{"Monarch":{"xref_id":"0010754"}}}


id: GO:0032282
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An acetyl-CoA carboxylase complex located in the stroma of a plastid.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetyl-CoA carboxylase complex","termid":"GO:0009317"},{"relation_name":"part_of","term_name":"plastid stroma","termid":"GO:0009532"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005737"],"is_obsolete":false,"name":"plastid acetyl-CoA carboxylase complex","synonyms":[{"name":"plastid ACCase complex","type":"exact"}],"termid":"GO:0032282"}


id: PBO:0029548
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_level_of_meiosis_gene_mRNA_during_vegetative_growth","termid":"PBO:0029548"}


id: FYECO:0000362
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which formaldehyde was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ formaldehyde","termid":"FYECO:0000362"}


id: PBO:0085639
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in inserting tail-anchored proteins into ER membranes; forms a complex with Mdy2p; highly conserved across species and homologous to human gene C7orf20","termid":"PBO:0085639"}


id: PBO:0066022
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAN binding protein 3","termid":"PBO:0066022"}


id: PBO:0083259
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; may be part of a bicistronic transcript with NKP2/YLR315W; overlaps the verified ORF TAD3/YLR316C","termid":"PBO:0083259"}


id: GO:0106143
data:
  {"annotated_genes":["SJAG_04680","SJAG_04848"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[59368,117697],"is_not":false,"summary":null,"term":"GO:0106143"}]},"cv_name":"cellular_component","definition":"A protein complex involved in the catalysis of the formation of the modified nucleotide 7-methylguanine (at position 46 in certain tRNAs, such as tRNA(phe) and tRNA(met). In yeast, it is a heterotetramer of two subunits, Trm8 (catalytic) and Trm82 (WD repeat).","definition_xrefs":["PMID:1738232","PMID:18184583","PMID:18164779","PMID:15811913","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA methyltransferase complex","termid":"GO:0043527"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04680":null,"SJAG_04848":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"tRNA (m7G46) methyltransferase complex","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"Trm8-Trm82 complex","type":"exact"},{"name":"tRNA (m7G46) methyltransferase","type":"exact"},{"name":"tRNA m7G methylation complex","type":"exact"}],"termid":"GO:0106143","terms_by_termid":{"GO:0106143":null}}


id: PBO:0051221
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 7-40 (pseudogene)","termid":"PBO:0051221"}


id: PBO:0075951
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"STAG3L5P-PVRIG2P-PILRB readthrough","termid":"PBO:0075951"}


id: PBO:0034117
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-supplies","termid":"PBO:0034117"}


id: PBO:0049366
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTF2I repeat domain containing 1 pseudogene 1","termid":"PBO:0049366"}


id: MONDO:0008732
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"X-linked adrenal hypoplasia congenita","termid":"MONDO:0010264"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"},{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0700092","MONDO:0002320"],"is_obsolete":false,"name":"adrenal hypoplasia, cytomegalic type","secondary_identifiers":["GARD:15131","UMLS:C1859977","OMIM:202155","MEDGEN:348509"],"synonyms":[{"name":"adrenal hypoplasia, cytomegalic type","type":"exact"}],"termid":"MONDO:0008732","xrefs":{"Monarch":{"xref_id":"0008732"}}}


id: PBO:0012231
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"swi5delta rhp57delta double mutant showed a repair profile very similar to that of the rhp51delta single mutant","termid":"PBO:0012231"}


id: MONDO:1010944
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Mycosis fungoides that occurs in domestic cat.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mycosis fungoides, non-human animal","termid":"MONDO:1010211"},{"relation_name":"is_a","term_name":"non-hodgkin lymphoma, domestic cat","termid":"MONDO:1010949"},{"relation_name":"is_a","term_name":"cancer, domestic cat","termid":"MONDO:1012571"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mycosis fungoides, domestic cat","secondary_identifiers":["OMIA:001109-9685"],"termid":"MONDO:1010944","xrefs":{"Monarch":{"xref_id":"1010944"}}}


id: FYPO:0006764
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle checkpoint phenotype in which the meiotic cell cycle DNA replication checkpoint is activated at a normal (i.e. indistinguishable from wild type) frequency, under conditions that cause checkpoint activation in wild-type cells. The meiotic DNA replication checkpoint delays the meiotic nuclear division until pre-meiotic DNA replication is complete.","definition_xrefs":["PomBase:mah","PMID:10521402"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meiotic cell cycle checkpoint phenotype","termid":"FYPO:0005511"},{"relation_name":"is_a","term_name":"normal cell cycle process","termid":"FYPO:0006915"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000298"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000298","FYPO:0000631","FYPO:0000257"],"is_obsolete":false,"name":"normal activation of meiotic cell cycle DNA replication checkpoint","synonyms":[{"name":"normal activation of meiotic DNA replication checkpoint","type":"exact"},{"name":"normal activation of meiotic G2/MI DNA replication checkpoint","type":"exact"},{"name":"normal meiotic DNA replication checkpoint activation","type":"exact"}],"termid":"FYPO:0006764"}


id: PBO:0062533
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 9 subfamily A member 2","termid":"PBO:0062533"}


id: MOD:01248
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that is produced by reaction of iodouridine monophosphate with an L-tyrosine residue to form an ether linkage.","definition_xrefs":["Unimod:292#Y","PubMed:11112526","PubMed:6540775","PubMed:11567090"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iodouridine monophosphate derivatized residue","termid":"MOD:00611"},{"relation_name":"is_a","term_name":"modified L-tyrosine residue","termid":"MOD:00919"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iodouridine monophosphate derivatized tyrosine","synonyms":[{"name":"Cross-link of (Iodo)-uracil MP with W,F,Y","type":"related"},{"name":"IodoU-AMP","type":"related"}],"termid":"MOD:01248"}


id: PBO:0012588
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae IRA1","termid":"PBO:0012588"}


id: GO:0038084
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by vascular endothelial growth factor (VEGF) binding its receptor on the surface of the target cell, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:signaling","PMID:17470632"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell surface receptor protein tyrosine kinase signaling pathway","termid":"GO:0007169"},{"relation_name":"part_of","term_name":"cellular response to vascular endothelial growth factor stimulus","termid":"GO:0035924"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"vascular endothelial growth factor signaling pathway","synonyms":[{"name":"VEGF signaling","type":"exact"},{"name":"VEGF-activated signaling pathway","type":"exact"},{"name":"vascular endothelial growth factor signalling pathway","type":"exact"}],"termid":"GO:0038084"}


id: PBO:0004303
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme Ubc1 (predicted)","termid":"PBO:0004303"}


id: PBO:0066049
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RAP1 GTPase activating protein 2","termid":"PBO:0066049"}


id: GO:1905147
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of smooth muscle hypertrophy.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","GOC:bc","GOC:BHF","GOC:BHF_miRNA","PMID:22161164"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of muscle hypertrophy","termid":"GO:0014743"},{"relation_name":"is_a","term_name":"regulation of muscle adaptation","termid":"GO:0043502"},{"relation_name":"regulates","term_name":"smooth muscle hypertrophy","termid":"GO:0014895"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of smooth muscle hypertrophy","termid":"GO:1905147"}


id: MOD:01612
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-tyrosine residue to 3'-iodo-L-tyrosine.","definition_xrefs":["PubMed:8995307","RESID:AA0509","ChEBI:27847"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoiodinated tyrosine","termid":"MOD:01228"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3'-iodo-L-tyrosine","synonyms":[{"name":"(2S)-2-amino-3-(4-hydroxy-3-iodophenyl)propanoic acid","type":"exact"},{"name":"3'-iodo-L-tyrosine","type":"exact"},{"name":"3-iodo-L-tyrosine","type":"exact"},{"name":"3-iodotyrosine","type":"exact"},{"name":"4-hydroxy-3-iodo-phenylalanine","type":"exact"},{"name":"MIT","type":"exact"},{"name":"MOD_RES Iodotyrosine","type":"exact"}],"termid":"MOD:01612"}


id: PBO:0054024
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1355","termid":"PBO:0054024"}


id: GO:0071698
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the olfactory placode over time from its initial formation until its mature state. The olfactory placode is a thickening of the neural ectoderm in the head region of the vertebrate embryo which develops into the olfactory region of the nasal cavity.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ectodermal placode development","termid":"GO:0071696"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"olfactory placode development","termid":"GO:0071698"}


id: PBO:0050534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"15-hydroxyprostaglandin dehydrogenase","termid":"PBO:0050534"}


id: MONDO:0020857
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"46 XX gonadal dysgenesis","termid":"MONDO:0009299"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"ovarian dysgenesis 7","secondary_identifiers":["UMLS:C4748263","OMIM:618117","GARD:18043","MEDGEN:1648458","DOID:0080499"],"synonyms":[{"name":"ODG7","type":"exact"},{"name":"OVARIAN DYSGENESIS 7","type":"exact"}],"termid":"MONDO:0020857","xrefs":{"Monarch":{"xref_id":"0020857"}}}


id: MONDO:0054831
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Coffin-Siris syndrome in which the cause of the disease is a mutation in the DPF2 gene.","definition_xrefs":["MONDO:patterns/OMIM_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Coffin-Siris syndrome","termid":"MONDO:0015452"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Coffin-Siris syndrome 7","secondary_identifiers":["DOID:0112369","GARD:16287","MEDGEN:1648281","OMIM:618027","UMLS:C4747954"],"synonyms":[{"name":"COFFIN-SIRIS syndrome 7","type":"related"},{"name":"CSS7","type":"related"}],"termid":"MONDO:0054831","xrefs":{"Monarch":{"xref_id":"0054831"}}}


id: PR:O74883
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DNA-directed RNA polymerase III subunit RPC5 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR12069:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-directed RNA polymerase III subunit rpc5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC330.13","secondary_identifiers":["UniProtKB:O74883"],"synonyms":[{"name":"RNA polymerase III subunit C37 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"RNA polymerase III subunit C5 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SPCC330.13","type":"related"},{"name":"Spom972h-POLR3E","type":"exact"}],"termid":"PR:O74883"}


id: PR:000050521
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A DNA-binding protein scr1 (Schizosaccharomyces pombe) that has not been phosphorylated at positions equivalent to Ser-235, Ser-332, Ser-333, Ser-408, and Ser-410 of the amino acid sequence represented by UniProtKB:O14335. Example: UniProtKB:O14335, Ser-235/Ser-332/Ser-333/Ser-408/Ser-410, PR:000026291.","definition_xrefs":["PMID:22140232","PRO:DAN","PomBase:VW"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA-binding protein scr1 (Schizosaccharomyces pombe)","termid":"PR:000050519"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"scr1/UnPhos:(S236,S332,S333,S408,S410)","pombase_gene_id":"SPBC1D7.02c","synonyms":[{"name":"PomBase_original_PRO_term_name: DNA-binding protein scr1 unphosphorylated 1 (Schizosaccharomyces pombe)","type":"exact"},{"name":"Spom-scr1/Phos:1","type":"exact"},{"name":"UniProtKB:O14335, Ser-235/Ser-332/Ser-333/Ser-408/Ser-410, PR:000026291","type":"narrow"},{"name":"scr1/UnPhos:(S236,S332,S333,S408,S410)","type":"exact"}],"termid":"PR:000050521"}


id: MONDO:0100038
data:
  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id: MONDO:0004851
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  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"acute myocarditis","termid":"MONDO:0002815"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"toxic myocarditis","secondary_identifiers":["ICD9:422.93","SCTID:31993003","UMLS:C0155691","MEDGEN:510049","DOID:9694"],"termid":"MONDO:0004851","xrefs":{"Monarch":{"xref_id":"0004851"}}}


id: GO:0002547
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of the tissue kallikrein-kinin cascade.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of kinin cascade","termid":"GO:0002258"},{"relation_name":"is_a","term_name":"regulation of tissue kallikrein-kinin cascade","termid":"GO:0002382"},{"relation_name":"positively_regulates","term_name":"tissue kallikrein-kinin cascade","termid":"GO:0002255"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0051604"},{"rel_name":"positively_regulates","termid":"GO:0051604"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0051604","GO:0008150"],"is_obsolete":false,"name":"positive regulation of tissue kallikrein-kinin cascade","synonyms":[{"name":"activation of tissue kallikrein-kinin cascade","type":"narrow"},{"name":"positive regulation of glandular kallikrein-kinin cascade","type":"exact"},{"name":"stimulation of tissue kallikrein-kinin cascade","type":"narrow"},{"name":"up regulation of tissue kallikrein-kinin cascade","type":"exact"},{"name":"up-regulation of tissue kallikrein-kinin cascade","type":"exact"},{"name":"upregulation of tissue kallikrein-kinin cascade","type":"exact"}],"termid":"GO:0002547"}


id: MONDO:0033560
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id: GO:0023059
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The positive regulation of a signal transduction pathway in response to a stimulus upon prolonged exposure to that stimulus.","definition_xrefs":["GOC:mtg_signal"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of signal transduction","termid":"GO:0009967"},{"relation_name":"is_a","term_name":"adaptation of signaling pathway","termid":"GO:0023058"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive adaptation of signaling pathway","synonyms":[{"name":"positive adaptation of signalling pathway","type":"exact"}],"termid":"GO:0023059"}


id: GO:0042568
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  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A complex of two proteins, which in animals is 50kDa and consists of the insulin-like growth factor (IGF) and one of the insulin-like growth factor binding protein-1 (IGFBP-1), -2 (IGFBP-2), -4 (IGFBP-4) and -6 (IGFBP-6). The complex plays a role in growth and development.","definition_xrefs":["GOC:jl","PMID:12239079"],"direct_ancestors":[{"relation_name":"is_a","term_name":"insulin-like growth factor binding protein complex","termid":"GO:0016942"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005576"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005576","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"insulin-like growth factor binary complex","synonyms":[{"name":"IGF binary complex","type":"exact"}],"termid":"GO:0042568"}


id: MONDO:0014404
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  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Webb-Dattani syndrome","secondary_identifiers":["UMLS:C4014708","OMIM:615926","Orphanet:370006","MEDGEN:863145"],"synonyms":[{"name":"WEBB-Dattani syndrome","type":"related"},{"name":"WEDAS","type":"related"},{"name":"Webb-Dattani syndrome","type":"exact"},{"name":"hypothalamic insufficiency-secondary microcephaly-visual impairment-urinary anomalies syndrome","type":"exact"},{"name":"hypothalamo-pituitary-frontotemporal hypoplasia with visual and renal anomalies","type":"related"}],"termid":"MONDO:0014404","xrefs":{"Monarch":{"xref_id":"0014404"}}}


id: PBO:0111647
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Clr6 I prime and Rpd3L histone deacetylase complex subunit Pst1","termid":"PBO:0111647"}


id: MONDO:0003868
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A meningioma that affects the anterior foramen magnum.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"foramen magnum meningioma","termid":"MONDO:0003109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anterior foramen magnum meningioma","secondary_identifiers":["MEDGEN:233988","DOID:6381","NCIT:C5281","UMLS:C1332302"],"synonyms":[{"name":"meningioma of anterior Foramen magnum","type":"exact"},{"name":"meningioma of the anterior Foramen magnum","type":"exact"}],"termid":"MONDO:0003868","xrefs":{"Monarch":{"xref_id":"0003868"}}}


id: PBO:0047259
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 242 member B","termid":"PBO:0047259"}


id: PBO:0062430
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily E member 91 pseudogene","termid":"PBO:0062430"}


id: GO:0061754
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that reduces the quantity of fibrinogen circulating in the bloodstream.","definition_xrefs":["GOC:rph","GOC:BHF","GOC:BHF_miRNA","PMID:20570858"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of circulating fibrinogen levels","termid":"GO:0044537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of circulating fibrinogen levels","termid":"GO:0061754"}


id: MONDO:0020719
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  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete susceptibility to Hirschsprung disease (obsolete MONDO:0020719)","synonyms":[{"name":"HSCR","type":"related"}],"termid":"MONDO:0020719","xrefs":{"Monarch":{"xref_id":"0020719"}}}


id: PBO:0034172
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  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_fasciculating_neuron_projection","termid":"PBO:0034172"}


id: MOD:00029
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  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts a source amino acid residue to an L-valine.","definition_xrefs":["DeltaMass:0","RESID:AA0020","PubMed:6692818","ChEBI:30015"],"direct_ancestors":[{"relation_name":"is_a","term_name":"natural, standard, encoded residue","termid":"MOD:01441"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-valine residue","synonyms":[{"name":"(2S)-2-amino-3-methylbutanoic acid","type":"exact"},{"name":"2-azanyl-3-methylbutanoic acid","type":"exact"},{"name":"L-valine","type":"exact"},{"name":"Val","type":"exact"},{"name":"alpha-amino-beta-methylbutyric acid","type":"exact"},{"name":"alpha-aminoisovaleric acid","type":"exact"}],"termid":"MOD:00029"}


id: PBO:0067320
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 408, pseudogene","termid":"PBO:0067320"}


id: PBO:0085809
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; encodes new type of domain, which ab initio modeling suggests is predominantly alpha-helical; nonessential for growth, deletion increases sensitivity to osmostress; expressed at moderate to high abundance; ORF also present in strains EC1118, YJM789, RM11-1a, and AWRI1631; Gln24 in S288C reference is substituted with Arg in wine strain EC1118; predicted S-palmitoylation site on Cys2, suggesting membrane association; transcript previously mischaracterized as SUT646","termid":"PBO:0085809"}


id: FYPO:0006829
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  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to zinc ion starvation is normal (i.e. indistinguishable from wild type). Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal RNA level during vegetative growth","termid":"FYPO:0001317"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001312","FYPO:0000257"],"is_obsolete":false,"name":"normal RNA level during cellular response to zinc ion starvation","synonyms":[{"name":"normal RNA accumulation during cellular response to zinc ion starvation","type":"related"},{"name":"normal RNA level during cellular response to zinc ion starvation during mitotic cell cycle","type":"related"},{"name":"normal RNA level during cellular response to zinc ion starvation during vegetative growth","type":"exact"},{"name":"normal RNA level during cellular response to zinc starvation","type":"exact"},{"name":"normal RNA level during zinc ion starvation","type":"exact"},{"name":"normal RNA level in response to zinc ion starvation","type":"exact"},{"name":"normal mRNA level during cellular response to zinc ion starvation","type":"narrow"},{"name":"normal transcript level during cellular response to zinc ion starvation","type":"exact"}],"termid":"FYPO:0006829"}


id: GO:0061738
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The autophagy process by which cytosolic proteins targeted for degradation are tagged with a chaperone and are directly transferred into and degraded in a late endosomal compartment.","definition_xrefs":["GOC:dph","GOC:PARL","PMID:21238931","GOC:autophagy","GOC:pad"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microautophagy","termid":"GO:0016237"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006914"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006914","GO:0008150"],"is_obsolete":false,"name":"late endosomal microautophagy","secondary_identifiers":["Reactome:R-HSA-9615710"],"termid":"GO:0061738"}


id: MONDO:0013486
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Spinocerebellar ataxia type 32 (SCA32) is a subtype of autosomal dominant cerebellar ataxia type 1 (ADCA type 1) characterized by ataxia, cognitive impairment and azoospermia in males.","definition_xrefs":["Orphanet:276183"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant cerebellar ataxia type I","termid":"MONDO:0019792"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0002039"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0005559","MONDO:0002039"],"is_obsolete":false,"name":"spinocerebellar ataxia type 32","secondary_identifiers":["MEDGEN:462693","UMLS:C3151343","SCTID:719254001","GARD:17276","icd11.foundation:1372046516","OMIM:613909"],"synonyms":[{"name":"SCA32","type":"exact"},{"name":"cerebellar ataxia with azoospermia and intellectual disability","type":"exact"},{"name":"spinocerebellar ataxia 32","type":"related"}],"termid":"MONDO:0013486","xrefs":{"Monarch":{"xref_id":"0013486"}}}


id: PBO:0054456
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1853","termid":"PBO:0054456"}


id: PR:P05219
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  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- nda3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P05219"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin beta chain (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC26H8.07c","synonyms":[{"name":"Spom972h-nda3","type":"exact"},{"name":"beta-tubulin (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P05219"}


id: PBO:0077905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tyrosylprotein sulfotransferase 1","termid":"PBO:0077905"}


id: GO:0004013
data:
  {"annotated_genes":["SJAG_03556"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[79258],"is_not":false,"summary":null,"term":"GO:0004013"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-homocysteine + H2O = adenosine + L-homocysteine.","definition_xrefs":["RHEA:21708"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-sulfur bonds","termid":"GO:0046508"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03556":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016787"],"is_obsolete":false,"name":"adenosylhomocysteinase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["Reactome:R-HSA-174401","MetaCyc:ADENOSYLHOMOCYSTEINASE-RXN","EC:3.13.2.1","Reactome:R-HSA-5579084"],"synonyms":[{"name":"AdoHcyase activity","type":"related"},{"name":"S-adenosyl-L-homocysteine hydrolase activity","type":"related"},{"name":"S-adenosylhomocysteinase activity","type":"related"},{"name":"S-adenosylhomocysteine hydrolase activity","type":"broad"},{"name":"S-adenosylhomocysteine synthase activity","type":"related"},{"name":"SAHase activity","type":"related"},{"name":"adenosylhomocysteine hydrolase activity","type":"related"}],"termid":"GO:0004013","terms_by_termid":{"GO:0004013":null}}


id: PBO:0059484
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MSRA divergent transcript","termid":"PBO:0059484"}


id: PBO:0027874
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_growth_during_cellular_response_to_ionizing_radiation","termid":"PBO:0027874"}


id: MONDO:0034980
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A rare ophthalmic disorder characterized by an abnormally large optic disk (greater than 2.1 mm in diameter). The anomaly is usually bilateral with otherwise normal configuration of the disk, and typically associated with an increased cup-to-disc ratio, a round or horizontal oval optic cup, and an intact, pale-appearing neuroretinal rim. In a less frequent variant, a unilateral, anomalous superior excavation obliterates part of the adjacent neuroretinal rim. In general, visual acuity and visual fields are normal, except for an enlarged blind spot. Ciliary arteries are more common in megalopapilla.","definition_xrefs":["Orphanet:519402"],"gene_count":0,"genotype_count":0,"name":"obsolete isolated megalopapilla (obsolete MONDO:0034980)","secondary_identifiers":["icd11.foundation:1410300100","ICD10CM:Q14.2"],"termid":"MONDO:0034980","xrefs":{"Monarch":{"xref_id":"0034980"}}}


id: MONDO:1011614
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Von Willebrand disease that occurs in horse.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Von Willebrand disease, non-human animal","termid":"MONDO:1011411"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Von Willebrand disease, horse","secondary_identifiers":["OMIA:001056-9796"],"termid":"MONDO:1011614","xrefs":{"Monarch":{"xref_id":"1011614"}}}


id: PBO:0078211
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor beta variable 7-4","termid":"PBO:0078211"}


id: GO:0045012
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A major histocompatibility complex class II receptor. These display processed antigens from virally-infected or transformed cells. Class-II-positive cells ('antigen-presenting cells') can take up antigens from outside by endocytosis, degrade them into small peptides, and re-export the peptides (now bound to MHC class II protein) to the cell surface. These peptide-MHC class II complexes can then be recognized by specific CD4+ lymphocytes.","definition_xrefs":["ISBN:0879694971","ISBN:081533642X"],"gene_count":0,"genotype_count":0,"name":"obsolete MHC class II receptor activity (obsolete GO:0045012)","synonyms":[{"name":"MHC class II receptor activity","type":"exact"},{"name":"class II major histocompatibility complex antigen","type":"related"},{"name":"major histocompatibility complex class II receptor","type":"exact"}],"termid":"GO:0045012"}


id: FYPO:0006775
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of phosphatidylinositol-4-phosphate measured in a cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered cellular phosphatidylinositol-4-phosphate level","termid":"FYPO:0001015"},{"relation_name":"is_a","term_name":"decreased cellular phosphoinositide level","termid":"FYPO:0005588"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"decreased cellular phosphatidylinositol-4-phosphate level","synonyms":[{"name":"decreased PI-4-P accumulation","type":"related"},{"name":"decreased cellular PI(4)P level","type":"exact"},{"name":"decreased cellular PI-4-P level","type":"exact"},{"name":"decreased cellular phosphatidylinositol-4-phosphate level during mitotic cell cycle","type":"related"},{"name":"decreased cellular phosphatidylinositol-4-phosphate level during vegetative growth","type":"exact"},{"name":"reduced cellular phosphatidylinositol-4-phosphate level","type":"exact"}],"termid":"FYPO:0006775"}


id: MONDO:0019173
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Rabies is a viral zoonosis leading to a fatal encephalopathy if not treated.","definition_xrefs":["Orphanet:770"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viral infectious disease","termid":"MONDO:0005108"},{"relation_name":"is_a","term_name":"infectious disorder of the nervous system","termid":"MONDO:0020010"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rabies","secondary_identifiers":["ICD9:071","GARD:7516","SCTID:14168008","DOID:11260","icd11.foundation:854762584","MedDRA:10037742","MEDGEN:48308","MESH:D011818","ICD10CM:A82","NCIT:C28182","NORD:1644","UMLS:C0034494"],"synonyms":[{"name":"lyssa","type":"exact"}],"termid":"MONDO:0019173","xrefs":{"Monarch":{"xref_id":"0019173"}}}


id: MONDO:0004815
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A plasma cell neoplasm associated with osteosclerotic and fibrotic changes in the bone trabeculae. Often, the lymph nodes show changes resembling the plasma cell variant of Castleman disease. It is often part of POEMS syndrome which is characterized by polyneuropathy, organomegaly, endocrinopathy, monoclonal gammopathy, and skin changes.","definition_xrefs":["NCIT:C7765"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma cell myeloma","termid":"MONDO:0009693"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570","MONDO:0004992"],"is_obsolete":false,"name":"osteosclerotic plasma cell myeloma","secondary_identifiers":["DOID:9541","MEDGEN:857662","UMLS:C3898068","SCTID:425657001"],"synonyms":[{"name":"osteosclerotic multiple myeloma","type":"exact"},{"name":"osteosclerotic myeloma","type":"related"},{"name":"osteosclerotic plasma cell myeloma","type":"exact"}],"termid":"MONDO:0004815","xrefs":{"Monarch":{"xref_id":"0004815"}}}


id: PBO:0088077
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ubiquitin-specific protease that cleaves Ub-protein fusions; interacts with cofactor Bre5p to regulate transport between ER and Golgi, deubiquitinating COPII and COPI proteins, Sec23p and Sec27p; mediates steady-state retention of Golgi membrane proteins with Bre5p; phosphorylation (S695) by Hog1p regulates transcriptional activation by osmostress; inhibits Ras/PKA signaling through Ira2p; inhibits silencing; role in ribophagy; protein abundance increases in response to DNA replication stress","termid":"PBO:0088077"}


id: GO:0016183
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of clathrin coated pits in the presynaptic membrane endocytic zone, triggered by the presence of high concentrations of synaptic vesicle components. This process leads to, but does not include budding of the membrane to form new vesicles.","definition_xrefs":["PMID:20448150","GOC:curators","PMID:10099709"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle coating","termid":"GO:0006901"},{"relation_name":"part_of","term_name":"synaptic vesicle budding from presynaptic endocytic zone membrane","termid":"GO:0016185"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0061024","GO:0016192","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"synaptic vesicle coating","termid":"GO:0016183"}


id: PBO:0059996
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND4L pseudogene 16","termid":"PBO:0059996"}


id: PBO:0074901
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 74","termid":"PBO:0074901"}


id: PATO:0000143
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000143 addictive substance (obsolete PATO:0000143)","termid":"PATO:0000143"}


id: MONDO:0015259
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Brachydactyly-mesomelia-intellectual disability-heart defects syndrome is a rare, genetic, multiple congenital anomalies/dysmorphic syndrome characterized by developmental delay, intellectual disability, thin habitus with narrow shoulders, mesomelic shortness of the arms, craniofacial dysmorphism (e.g. long lower face, maxillary hypoplasia, beak nose, short columella, prognathia, high arched palate, obtuse mandibular angle), brachydactyly (mostly involving middle phalanges) and cardiovascular anomalies (i.e. aortic root dilatation, mitral valve prolapse).","definition_xrefs":["Orphanet:1277"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"brachydactyly-mesomelia-intellectual disability-heart defects syndrome","secondary_identifiers":["UMLS:C4707567","GARD:5036","MEDGEN:1645467"],"synonyms":[{"name":"Stratton-Garcia-Young syndrome","type":"exact"},{"name":"brachydactyly mesomelia intellectual disability aortic dilatation mitral valve prolapse and characteristic face","type":"related"},{"name":"brachydactyly mesomelia mental retardation aortic dilatation mitral valve prolapse and characteristic face","type":"related"}],"termid":"MONDO:0015259","xrefs":{"Monarch":{"xref_id":"0015259"}}}


id: PBO:0070673
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7 pseudogene 44","termid":"PBO:0070673"}


id: PBO:0070248
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 190 pseudogene","termid":"PBO:0070248"}


id: PR:O13853
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- its3 gene.","definition_xrefs":["UniProtKB:O13853","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol 4-phosphate 5-kinase its3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC19G12.14","synonyms":[{"name":"1-phosphatidylinositol 4-phosphate kinase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"PIP5K (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"PtdIns(4)P-5-kinase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-its3","type":"exact"},{"name":"diphosphoinositide kinase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13853"}


id: PBO:0048525
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gem nuclear organelle associated protein 2","termid":"PBO:0048525"}


id: GO:0071886
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to the amine 1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine, a serotonin receptor agonist that can act as a psychedelic drug.","definition_xrefs":["PMID:19057895","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amine binding","termid":"GO:0043176"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding","synonyms":[{"name":"(+/-)2-(4-iodo-2,5-dimethoxy-phenyl)-1-methyl-ethylamine binding","type":"exact"},{"name":"1-(4-iodo-2,5-dimethoxyphenyl)-2-aminopropane binding","type":"exact"},{"name":"4-iodo-2,5-dimethoxyphenylisopropylamine binding","type":"exact"}],"termid":"GO:0071886"}


id: PBO:0054013
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1343","termid":"PBO:0054013"}


id: GO:1900694
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of (+)-kotanin biosynthetic process.","definition_xrefs":["GOC:TermGenie","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of secondary metabolite biosynthetic process","termid":"GO:1900378"},{"relation_name":"is_a","term_name":"regulation of (+)-kotanin biosynthetic process","termid":"GO:1900692"},{"relation_name":"positively_regulates","term_name":"(+)-kotanin biosynthetic process","termid":"GO:1900596"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0019748"},{"rel_name":"regulates","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0008150","GO:0019748"],"is_obsolete":false,"name":"positive regulation of (+)-kotanin biosynthetic process","synonyms":[{"name":"activation of (+)-kotanin anabolism","type":"exact"},{"name":"activation of (+)-kotanin biosynthesis","type":"exact"},{"name":"activation of (+)-kotanin biosynthetic process","type":"narrow"},{"name":"activation of (+)-kotanin formation","type":"exact"},{"name":"activation of (+)-kotanin synthesis","type":"exact"},{"name":"positive regulation of (+)-kotanin anabolism","type":"exact"},{"name":"positive regulation of (+)-kotanin biosynthesis","type":"exact"},{"name":"positive regulation of (+)-kotanin formation","type":"exact"},{"name":"positive regulation of (+)-kotanin synthesis","type":"exact"},{"name":"up regulation of (+)-kotanin anabolism","type":"exact"},{"name":"up regulation of (+)-kotanin biosynthesis","type":"exact"},{"name":"up regulation of (+)-kotanin biosynthetic process","type":"exact"},{"name":"up regulation of (+)-kotanin formation","type":"exact"},{"name":"up regulation of (+)-kotanin synthesis","type":"exact"},{"name":"up-regulation of (+)-kotanin anabolism","type":"exact"},{"name":"up-regulation of (+)-kotanin biosynthesis","type":"exact"},{"name":"up-regulation of (+)-kotanin biosynthetic process","type":"exact"},{"name":"up-regulation of (+)-kotanin formation","type":"exact"},{"name":"up-regulation of (+)-kotanin synthesis","type":"exact"},{"name":"upregulation of (+)-kotanin anabolism","type":"exact"},{"name":"upregulation of (+)-kotanin biosynthesis","type":"exact"},{"name":"upregulation of (+)-kotanin biosynthetic process","type":"exact"},{"name":"upregulation of (+)-kotanin formation","type":"exact"},{"name":"upregulation of (+)-kotanin synthesis","type":"exact"}],"termid":"GO:1900694"}


id: MONDO:0011439
data:
  {"annotated_genes":["SJAG_00526"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87063],"is_not":false,"summary":null,"term":"MONDO:0011439"}]},"cv_name":"mondo","definition":"Spinocerebellar ataxia type 12 (SCA12) is a very rare subtype of type I autosomal dominant cerebellar ataxia (ADCA type I). It is characterized by the presence of action tremor associated with relatively mild cerebellar ataxia. Associated pyramidal and extrapyramidal signs and dementia have been reported.","definition_xrefs":["Orphanet:98762"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant cerebellar ataxia type I","termid":"MONDO:0019792"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00526":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0002039"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0005559","MONDO:0002039"],"is_obsolete":false,"name":"spinocerebellar ataxia type 12","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["NCIT:C154316","DOID:0050962","icd11.foundation:1210063722","MEDGEN:347653","GARD:10476","MESH:C565790","OMIM:604326","UMLS:C1858501","SCTID:719208005"],"synonyms":[{"name":"SCA12","type":"exact"},{"name":"spinocerebellar ataxia 12","type":"related"},{"name":"spinocerebellar ataxia type 12","type":"exact"}],"termid":"MONDO:0011439","terms_by_termid":{"MONDO:0011439":null},"xrefs":{"Monarch":{"xref_id":"0011439"}}}


id: FYPO:0008065
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which the frequency of occurrence of ascospore formation is decreased after phosphate removal.","direct_ancestors":[{"relation_name":"is_a","term_name":"decreased sporulation frequency","termid":"FYPO:0000584"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000003"],"is_obsolete":false,"name":"decreased sporulation frequency during phosphate starvation","termid":"FYPO:0008065"}


id: MONDO:0012057
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"legionnaire disease, susceptibility to","secondary_identifiers":["UMLS:C1837872","MEDGEN:325276","OMIM:608556"],"synonyms":[{"name":"Legionella infection","type":"related"},{"name":"legionnaire disease, susceptibility to","type":"exact"},{"name":"legionnaire's disease","type":"related"},{"name":"susceptibility to legionnaire disease","type":"related"}],"termid":"MONDO:0012057","xrefs":{"Monarch":{"xref_id":"0012057"}}}


id: PBO:0027816
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_cell_population_growth_on_uracil_nitrogen_source","termid":"PBO:0027816"}


id: PBO:0059985
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND4L pseudogene 5","termid":"PBO:0059985"}


id: MONDO:0044209
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disease that has its basis in the disruption of complement activation, lectin pathway.","definition_xrefs":["MONDO:patterns/basis_in_disruption_of_process"],"direct_ancestors":[{"relation_name":"is_a","term_name":"complement deficiency","termid":"MONDO:0003832"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"disorder of lectin complement activation pathway","secondary_identifiers":["OMIMPS:614372"],"synonyms":[{"name":"complement activation, lectin pathway disease","type":"exact"},{"name":"disorder of complement activation, lectin pathway","type":"exact"}],"termid":"MONDO:0044209","xrefs":{"Monarch":{"xref_id":"0044209"}}}


id: MONDO:0013505
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any azoospermia in which the cause of the disease is a mutation in the DPY19L2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spermatogenic failure","termid":"MONDO:0004983"},{"relation_name":"is_a","term_name":"male infertility due to globozoospermia","termid":"MONDO:0015746"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"spermatogenic failure 9","secondary_identifiers":["MEDGEN:462757","GARD:15735","OMIM:613958","UMLS:C3151407","DOID:0111156","DOID:0070175"],"synonyms":[{"name":"DPY19L2 azoospermia","type":"exact"},{"name":"SPGF9","type":"related"},{"name":"azoospermia caused by mutation in DPY19L2","type":"exact"},{"name":"globozoospermia, complete","type":"related"},{"name":"globozoospermia, total","type":"related"},{"name":"spermatogenic failure 9","type":"exact"},{"name":"spermatogenic failure type 9","type":"exact"}],"termid":"MONDO:0013505","xrefs":{"Monarch":{"xref_id":"0013505"}}}


id: GO:0032976
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which enzymes, such as aspartate aminotransferase, are enabled to move from the mitochondrial matrix into the cytosol, as part of the apoptotic process.","definition_xrefs":["GOC:mah","GOC:mtg_apoptosis","PMID:9843949"],"direct_ancestors":[{"relation_name":"is_a","term_name":"apoptotic mitochondrial changes","termid":"GO:0008637"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007005"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0007005","GO:0008150"],"is_obsolete":false,"name":"release of matrix enzymes from mitochondria","synonyms":[{"name":"mAST release from mitochondria","type":"narrow"},{"name":"release of aspartate aminotransferase from mitochondria","type":"narrow"}],"termid":"GO:0032976"}


id: MONDO:0004577
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Area of epithelial tissue loss from corneal surface; associated with inflammatory cells in the cornea and anterior chamber.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"keratitis","termid":"MONDO:0003085"},{"relation_name":"is_a","term_name":"ulcer disease","termid":"MONDO:0043839"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"corneal ulcer","secondary_identifiers":["icd11.foundation:2089700977","MEDGEN:40486","MESH:D003320","NCIT:C50515","SCTID:91514001","ICD10CM:H16.0","UMLS:C0010043","ICD9:370.00","HP:0200020","DOID:8463","ICD9:370.0"],"synonyms":[{"name":"Ulcer, corneal","type":"exact"},{"name":"cornea ulcer disease","type":"exact"},{"name":"ulcer disease of cornea","type":"exact"}],"termid":"MONDO:0004577","xrefs":{"Monarch":{"xref_id":"0004577"}}}


id: PBO:0073850
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC9A3 3' UTR overlapping transcript 1","termid":"PBO:0073850"}


id: MONDO:0014696
data:
  {"annotated_genes":["SJAG_02031"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86829],"is_not":false,"summary":null,"term":"MONDO:0014696"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"COFS syndrome","termid":"MONDO:0008926"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02031":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0021190"},{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0021190","MONDO:0006025","MONDO:0005328"],"is_obsolete":false,"name":"cerebrooculofacioskeletal syndrome 3","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0080913","MESH:C565035","MEDGEN:342008","OMIM:616570","UMLS:C1851443","GARD:16140"],"synonyms":[{"name":"COFS3","type":"exact"},{"name":"cerebrooculofacioskeletal syndrome 3","type":"exact"},{"name":"cerebrooculofacioskeletal syndrome type 3","type":"exact"}],"termid":"MONDO:0014696","terms_by_termid":{"MONDO:0014696":null},"xrefs":{"Monarch":{"xref_id":"0014696"}}}


id: MONDO:0020268
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete ichthyosis associated with ocular features (obsolete MONDO:0020268)","secondary_identifiers":["Orphanet:98698"],"termid":"MONDO:0020268","xrefs":{"Monarch":{"xref_id":"0020268"}}}


id: MONDO:0010376
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Brooks-Wisniewski-brown syndrome (obsolete MONDO:0010376)","termid":"MONDO:0010376","xrefs":{"Monarch":{"xref_id":"0010376"}}}


id: MONDO:0032917
data:
  {"annotated_genes":["SJAG_03088"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88523],"is_not":false,"summary":null,"term":"MONDO:0032917"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant nonsyndromic hearing loss","termid":"MONDO:0019587"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03088":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0019497"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0019497"],"is_obsolete":false,"name":"hearing loss, autosomal dominant 76","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1710038","GARD:18154","DOID:0112167","UMLS:C5394080","OMIM:618787"],"synonyms":[{"name":"DEAFNESS, AUTOSOMAL DOMINANT 76","type":"narrow"},{"name":"DFNA76","type":"narrow"},{"name":"deafness, autosomal dominant 76","type":"narrow"}],"termid":"MONDO:0032917","terms_by_termid":{"MONDO:0032917":null},"xrefs":{"Monarch":{"xref_id":"0032917"}}}


id: MONDO:0019799
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A very rare form of chronic hepatic porphyria characterized by bullous photodermatitis.","definition_xrefs":["Orphanet:95159"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial porphyria cutanea tarda","termid":"MONDO:0008296"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0019142"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0002515","MONDO:0004335","MONDO:0005093","MONDO:0019142"],"is_obsolete":false,"name":"hepatoerythropoietic porphyria","secondary_identifiers":["NANDO:2201270","NCIT:C84754","UMLS:C0162569","SCTID:111386004","DOID:5230","GARD:6169","icd11.foundation:214080046","MEDGEN:57940","NANDO:1200819","MESH:D017121"],"synonyms":[{"name":"HEP","type":"exact"}],"termid":"MONDO:0019799","xrefs":{"Monarch":{"xref_id":"0019799"}}}


id: PBO:0063509
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PDS5 cohesin associated factor B","termid":"PBO:0063509"}


id: MONDO:0032582
data:
  {"annotated_genes":["SJAG_04017"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88199],"is_not":false,"summary":null,"term":"MONDO:0032582"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"familial nephrotic syndrome","termid":"MONDO:0002350"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04017":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"nephrotic syndrome, type 19","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1648305","OMIM:618178","UMLS:C4748552","GARD:16301","DOID:0080394"],"synonyms":[{"name":"NEPHROTIC SYNDROME, TYPE 19","type":"related"},{"name":"NPHS19","type":"related"}],"termid":"MONDO:0032582","terms_by_termid":{"MONDO:0032582":null},"xrefs":{"Monarch":{"xref_id":"0032582"}}}


id: PBO:0056275
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mannosidase alpha class 1C member 1","termid":"PBO:0056275"}


id: GO:1903174
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of fatty alcohol.","definition_xrefs":["GO_REF:0000068","GOC:TermGenie","GOC:mengo_curators","PMID:24036493"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alcohol catabolic process","termid":"GO:0046164"},{"relation_name":"is_a","term_name":"fatty acid derivative catabolic process","termid":"GO:1901569"},{"relation_name":"is_a","term_name":"fatty alcohol metabolic process","termid":"GO:1903173"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0006629","GO:0008150"],"is_obsolete":false,"name":"fatty alcohol catabolic process","synonyms":[{"name":"fatty alcohol breakdown","type":"exact"},{"name":"fatty alcohol catabolism","type":"exact"},{"name":"fatty alcohol degradation","type":"exact"}],"termid":"GO:1903174"}


id: PBO:0074301
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLX1A-SULT1A3 readthrough (NMD candidate)","termid":"PBO:0074301"}


id: PR:O94684
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pmh1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase II transcription factor B subunit 3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC776.18c","synonyms":[{"name":"CDK-activating kinase assembly factor MAT1 homolog (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"RING finger protein pmh1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"RNA polymerase II transcription factor B 38 kDa subunit (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"RNA polymerase II transcription factor B p38 subunit (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-pmh1","type":"exact"}],"termid":"PR:O94684"}


id: MONDO:0016388
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete bone sarcoma (obsolete MONDO:0016388)","termid":"MONDO:0016388","xrefs":{"Monarch":{"xref_id":"0016388"}}}


id: MONDO:0003771
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A meningioma that affects the jugular foramen.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"meningioma","termid":"MONDO:0016642"},{"relation_name":"is_a","term_name":"skull neoplasm","termid":"MONDO:0024653"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"jugular foramen meningioma","secondary_identifiers":["NCIT:C5293","MEDGEN:233586","UMLS:C1334298","DOID:6110"],"synonyms":[{"name":"jugular foramen meningioma (disease)","type":"exact"},{"name":"meningioma (disease) of jugular foramen","type":"exact"},{"name":"meningioma of jugular Foramen","type":"exact"},{"name":"meningioma of the jugular Foramen","type":"exact"}],"termid":"MONDO:0003771","xrefs":{"Monarch":{"xref_id":"0003771"}}}


id: PBO:0034405
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-regulates_process_that_occurs_in","termid":"PBO:0034405"}


id: PBO:0064443
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"POC1 centriolar protein B","termid":"PBO:0064443"}


id: PBO:0087458
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of a heterodimeric guanine nucleotide exchange factor (GEF); subunit of the Mon1-Ccz1 GEF complex, which stimulates nucleotide exchange and activation of Ypt7p, a Rab family GTPase involved in membrane tethering and fusion events at the late endosome and vacuole; GEF activity is stimulated by membrane association and anionic phospholipids; involved in localizing Ypt7p to the vacuolar membrane; required for macroautophagy, the CVT pathway and mitophagy","termid":"PBO:0087458"}


id: MONDO:0032885
data:
  {"annotated_genes":["SJAG_01608","SJAG_03423"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88615,88616],"is_not":false,"summary":null,"term":"MONDO:0032885"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"spondyloepimetaphyseal dysplasia","termid":"MONDO:0100510"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01608":null,"SJAG_03423":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"spondyloepimetaphyseal dysplasia, Isidor-Toutain type","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5231478","MEDGEN:1684771","OMIM:618728"],"synonyms":[{"name":"SEMDIST","type":"related"},{"name":"SPONDYLOEPIMETAPHYSEAL DYSPLASIA, ISIDOR-TOUTAIN TYPE","type":"related"}],"termid":"MONDO:0032885","terms_by_termid":{"MONDO:0032885":null},"xrefs":{"Monarch":{"xref_id":"0032885"}}}


