# terms

id: PR:Q9HGM3
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An AFG3-like protein 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO04081","PANTHER:PTHR23076:SF11","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial respiratory chain complexes assembly protein rca1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC543.09","secondary_identifiers":["UniProtKB:Q9HGM3"],"synonyms":[{"name":"Spom972h-AFG3L2","type":"exact"}],"termid":"PR:Q9HGM3"}


id: MONDO:0017712
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disorder of lipid absorption and transport characterized by steatorrhea with foul-smelling stools from birth, diminished serum carotene and vitamin E and a combined deficiency of the pancreatic enzymes lipase and colipase. Patients are otherwise healthy and develop normally with no apparent pancreatic disease. There have been no further descriptions in the literature since 1990.","definition_xrefs":["Orphanet:309111"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pancreatic triacylglycerol lipase deficiency","termid":"MONDO:0013700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002525"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0005066","MONDO:0002525"],"is_obsolete":false,"name":"combined pancreatic lipase-colipase deficiency","secondary_identifiers":["UMLS:C4706317","MEDGEN:1631148","ICD10CM:K90.3","GARD:17403"],"termid":"MONDO:0017712","xrefs":{"Monarch":{"xref_id":"0017712"}}}


id: PBO:0075235
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorting nexin 7","termid":"PBO:0075235"}


id: MONDO:0015299
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"female reproductive system disorder","termid":"MONDO:0002263"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Asherman syndrome","secondary_identifiers":["Orphanet:137686","SCTID:48236007","MedDRA:10022821","icd11.foundation:2022431339","MedDRA:10053868","GARD:5853","NORD:811","MEDGEN:57629","UMLS:C0156372"],"synonyms":[{"name":"Asherman syndrome","type":"exact"},{"name":"Asherman's Syndrome","type":"exact"},{"name":"Asherman's syndrome","type":"related"},{"name":"intrauterine adhesions","type":"exact"},{"name":"intrauterine synechiae","type":"exact"},{"name":"uterine synechiae","type":"related"}],"termid":"MONDO:0015299","xrefs":{"Monarch":{"xref_id":"0015299"}}}


id: GO:1903461
data:
  {"annotated_genes":["SJAG_02690","SJAG_02199","SJAG_02294","SJAG_00198","SJAG_05232","SJAG_00618","SJAG_04183"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73912,94495,96917,102502,102536,103400,106058],"is_not":false,"summary":null,"term":"GO:1903461"}]},"cv_name":"biological_process","definition":"Any DNA replication, Okazaki fragment processing that is involved in mitotic cell cycle DNA replication.","definition_xrefs":["PMID:1234","GOC:TermGenie","GO_REF:0000060","GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA replication, Okazaki fragment processing","termid":"GO:0033567"},{"relation_name":"is_a","term_name":"mitotic cell cycle process","termid":"GO:1903047"},{"relation_name":"part_of","term_name":"mitotic DNA replication","termid":"GO:1902969"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00198":null,"SJAG_00618":null,"SJAG_02199":null,"SJAG_02294":null,"SJAG_02690":null,"SJAG_04183":null,"SJAG_05232":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006260"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0006259","GO:0006260","GO:0007049","GO:0008150"],"is_obsolete":false,"name":"Okazaki fragment processing involved in mitotic DNA replication","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"DNA replication, Okazaki fragment processing involved in DNA replication during S phase involved in mitotic cell cycle","type":"related"},{"name":"DNA replication, Okazaki fragment processing involved in DNA replication involved in S phase involved in mitotic cell cycle","type":"exact"},{"name":"DNA replication, Okazaki fragment processing involved in DNA replication involved in S-phase involved in mitotic cell cycle","type":"exact"},{"name":"DNA replication, Okazaki fragment processing involved in mitotic nuclear cell cycle DNA replication","type":"exact"},{"name":"DNA replication, Okazaki fragment processing involved in nuclear cell cycle DNA replication involved in mitotic cell cycle","type":"related"}],"termid":"GO:1903461","terms_by_termid":{"GO:1903461":null}}


id: PBO:0005887
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA Phenylalanine, mitochondrial","termid":"PBO:0005887"}


id: MONDO:0700188
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Synovial cell sarcoma occurring in a cat.","definition_xrefs":["NCIT:C181658"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sarcoma, non-human animal","termid":"MONDO:0700131"},{"relation_name":"is_a","term_name":"feline neoplasm","termid":"MONDO:0700175"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"feline synovial cell sarcoma","termid":"MONDO:0700188","xrefs":{"Monarch":{"xref_id":"0700188"}}}


id: MONDO:0006783
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Collection of air and blood in the pleural cavity.","definition_xrefs":["MESH:D006468"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pneumothorax","termid":"MONDO:0002076"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hemopneumothorax","secondary_identifiers":["EFO:1000963","MedDRA:10060632","SCTID:16632002","UMLS:C0019077","ICD9:511.89","DOID:2718","MEDGEN:9208"],"termid":"MONDO:0006783","xrefs":{"Monarch":{"xref_id":"0006783"}}}


id: MONDO:0018862
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete cat-scratch disease (obsolete MONDO:0018862)","termid":"MONDO:0018862","xrefs":{"Monarch":{"xref_id":"0018862"}}}


id: SO:0001989
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A 5' UTR variant where a premature start codon is lost.","definition_xrefs":["SANGER:am"],"direct_ancestors":[{"relation_name":"is_a","term_name":"5_prime_UTR_premature_start_codon_variant","termid":"SO:0001983"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5_prime_UTR_premature_start_codon_loss_variant","termid":"SO:0001989"}


id: PBO:0064433
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyridoxamine 5'-phosphate oxidase","termid":"PBO:0064433"}


id: GO:0052715
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: mannosyl-diinositol phosphorylceramide + H2O = C26-phytoceramide + mannosyldiphosphorylinositol.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inositol phosphorylceramide phospholipase activity","termid":"GO:0052713"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0016788","GO:0003674"],"is_obsolete":false,"name":"mannosyl-diinositol phosphorylceramide phospholipase activity","termid":"GO:0052715"}


id: GO:0043663
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A symbiosome containing any of various structurally modified bacteria, such as those occurring on the root nodules of leguminous plants, of a host cell.","definition_xrefs":["GOC:cc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host symbiosome","termid":"GO:0043658"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host bacteroid-containing symbiosome","termid":"GO:0043663"}


id: MONDO:0017303
data:
  {"annotated_genes":["SJAG_03379","SJAG_03145","SJAG_04887","SJAG_03025"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87105],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008070"},{"annotations":[87153],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0800341"},{"annotations":[86979],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012239"},{"annotations":[88536],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009725"},{"annotations":[87681],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012538"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"qualitative or quantitative protein defects in neuromuscular diseases","termid":"MONDO:0016139"}],"gene_count":4,"genes_by_uniquename":{"SJAG_03025":null,"SJAG_03145":null,"SJAG_03379":null,"SJAG_04887":null},"genotype_count":0,"is_obsolete":false,"name":"qualitative or quantitative defects of tropomyosin","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:1842978","GARD:21123","UMLS:C5681012","Orphanet:284790"],"termid":"MONDO:0017303","terms_by_termid":{"MONDO:0008070":null,"MONDO:0009725":null,"MONDO:0012239":null,"MONDO:0012538":null,"MONDO:0800341":null},"xrefs":{"Monarch":{"xref_id":"0017303"}}}


id: PBO:0117110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RTBDN antisense RNA 1","termid":"PBO:0117110"}


id: MONDO:0030975
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited primary ovarian failure","termid":"MONDO:0019852"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005047"}],"interesting_parent_ids":["MONDO:0005047"],"is_obsolete":false,"name":"premature ovarian failure 20","secondary_identifiers":["MEDGEN:1808256","UMLS:C5677011","OMIM:619938"],"synonyms":[{"name":"POF20","type":"exact"},{"name":"premature ovarian failure 20","type":"exact"}],"termid":"MONDO:0030975","xrefs":{"Monarch":{"xref_id":"0030975"}}}


id: MONDO:0005520
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Bone softening and weakening usually caused by deficiency or impaired metabolism of vitamin D. Deficiency of calcium, magnesium, or phosphorus may also cause rickets. It predominantly affects children who suffer from severe malnutrition. It manifests with bone pain, fractures, muscle weakness, and skeletal deformities.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bone remodeling disease","termid":"MONDO:0000833"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rickets","secondary_identifiers":["MESH:D012279","DOID:10609","HP:0002748","SCTID:68295002","GARD:5700","ICD9:268.0","NCIT:C26878","UMLS:C0035579","SCTID:41345002","MEDGEN:48470","EFO:0005583"],"synonyms":[{"name":"active rickets","type":"related"},{"name":"hypovitaminosis D","type":"related"},{"name":"nutritional rickets","type":"related"},{"name":"rachitis","type":"exact"},{"name":"rickets","type":"exact"},{"name":"rickets (disease)","type":"exact"},{"name":"vitamin D deficiency disease","type":"related"},{"name":"vitamin D hydroxylation-deficient rickets","type":"exact"},{"name":"vitamin-D deficiency rickets","type":"related"}],"termid":"MONDO:0005520","xrefs":{"Monarch":{"xref_id":"0005520"}}}


id: MONDO:0009784
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ophthalmoplegic neuromuscular disorder with abnormal mitochondria","secondary_identifiers":["OMIM:258470","MEDGEN:340508","MESH:C564925","UMLS:C1850302"],"synonyms":[{"name":"ophthalmoplegic neuromuscular disorder with abnormal mitochondria","type":"exact"}],"termid":"MONDO:0009784","xrefs":{"Monarch":{"xref_id":"0009784"}}}


id: PBO:0063080
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PAPPA antisense RNA 2","termid":"PBO:0063080"}


id: PBO:0054650
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2055","termid":"PBO:0054650"}


id: GO:0004900
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with erythropoietin and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.","definition_xrefs":["GOC:ai","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor activity","termid":"GO:0004896"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"erythropoietin receptor activity","termid":"GO:0004900"}


id: MONDO:0958351
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A very rare form of composite dysraphism characterized by the presence of a split cord malformation and a myeloschisis on one of the two hemicords. Hemicords can be in a single dural sac or in two separated dural sacs. Other spinal cord malformations can be associated. Due to the comparable prognosis it is considered as a subtype of myeloschisis.","definition_xrefs":["Orphanet:645393"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myeloschisis","termid":"MONDO:0958076"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"hemi-myeloschisis","secondary_identifiers":["MEDGEN:1853138","UMLS:C5816709"],"termid":"MONDO:0958351","xrefs":{"Monarch":{"xref_id":"0958351"}}}


id: PBO:0077413
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 150A","termid":"PBO:0077413"}


id: RO:0002558
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"inverse of is evidence for","direct_ancestors":[{"relation_name":"is_a","term_name":"related_via_evidence_or_inference_to","termid":"RO:0002616"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_evidence","termid":"RO:0002558"}


id: PBO:0073924
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC16A12 antisense RNA 1","termid":"PBO:0073924"}


id: PBO:0060959
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NFKB inhibitor like 1","termid":"PBO:0060959"}


id: PBO:0001684
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"swi5delta rhp57delta double mutant showed a repair profile very similar to that to the rhp51deltasingle mutant","termid":"PBO:0001684"}


id: PBO:0003578
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"double-strand siRNA ribonuclease Eri1","termid":"PBO:0003578"}


id: GO:1902514
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of generation of calcium ion transmembrane transport via high voltage-gated calcium channel.","definition_xrefs":["GOC:dph","PMID:1611048","GOC:TermGenie","GOC:pg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of calcium ion transmembrane transport","termid":"GO:1903169"},{"relation_name":"regulates","term_name":"calcium ion transmembrane transport via high voltage-gated calcium channel","termid":"GO:0061577"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0055085","GO:0006810"],"is_obsolete":false,"name":"regulation of calcium ion transmembrane transport via high voltage-gated calcium channel","synonyms":[{"name":"regulation of generation of L-type calcium current","type":"related"}],"termid":"GO:1902514"}


id: PBO:0050155
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group box 3 pseudogene 11","termid":"PBO:0050155"}


id: PBO:0087401
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Stress-responsive transcriptional activator; activated in stochastic pulses of nuclear localization in response to various stress conditions; binds DNA at stress response elements of responsive genes; light sensing pathway component that accumulates in the nucleus in response to blue light; relative distribution to nucleus increases upon DNA replication stress","termid":"PBO:0087401"}


id: PBO:0003462
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA processing protein (predicted)","termid":"PBO:0003462"}


id: PBO:0026813
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_level_of_early_meiotic_gene_mRNA_during_meiotic_cell_cycle","termid":"PBO:0026813"}


id: SO:1000151
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A chromosomal inversion caused by three breaks in the same chromosome; both central segments are inverted in place (i.e., they are not transposed).","definition_xrefs":["FB:reference_manual"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chromosomal_inversion","termid":"SO:1000030"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bipartite_inversion","synonyms":[{"name":"(Drosophila)bIn","type":"related"},{"name":"bipartite inversion","type":"exact"}],"termid":"SO:1000151"}


id: GO:0052630
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UTP + N-acetyl-alpha-D-galactosamine 1-phosphate = diphosphate + UDP-N-acetyl-D-galactosamine.","definition_xrefs":["EC:2.7.7.83","RHEA:34363"],"direct_ancestors":[{"relation_name":"is_a","term_name":"uridylyltransferase activity","termid":"GO:0070569"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016779"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016779","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"UDP-N-acetylgalactosamine diphosphorylase activity","synonyms":[{"name":"N-acetylgalactosamine 1-phosphate uridylyltransferase","type":"exact"},{"name":"N-acetylgalactosamine-1-phosphate uridyltransferase activity","type":"exact"},{"name":"UDP-GalNAc pyrophosphorylase activity","type":"exact"},{"name":"UDP-N-acetylgalactosamine pyrophosphorylase activity","type":"exact"},{"name":"UDP-acetylgalactosamine pyrophosphorylase activity","type":"exact"},{"name":"UTP:2-acetamido-2-deoxy-alpha-D-galactose-1-phosphate uridylyltransferase activity","type":"exact"},{"name":"UTP:N-acetyl-alpha-D-galactosamine-1-phosphate uridylyltransferase activity","type":"exact"},{"name":"uridine diphosphate-N-acetylgalactosamine pyrophosphorylase activity","type":"exact"},{"name":"uridine diphosphoacetylgalactosamine phosphorylase activity","type":"exact"},{"name":"uridine diphosphoacetylgalactosamine pyrophosphorylase activity","type":"exact"}],"termid":"GO:0052630"}


id: GO:1904052
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of protein targeting to vacuole involved in autophagy.","definition_xrefs":["GOC:pad","GOC:TermGenie","PMID:22020285","GO_REF:0000058","GOC:PARL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of intracellular protein transport","termid":"GO:0090317"},{"relation_name":"is_a","term_name":"negative regulation of vacuolar transport","termid":"GO:1903336"},{"relation_name":"is_a","term_name":"regulation of protein targeting to vacuole involved in autophagy","termid":"GO:1904051"},{"relation_name":"negatively_regulates","term_name":"protein targeting to vacuole involved in autophagy","termid":"GO:0071211"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0006605"},{"rel_name":"regulates","termid":"GO:0006605"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0006605"],"is_obsolete":false,"name":"negative regulation of protein targeting to vacuole involved in autophagy","synonyms":[{"name":"down regulation of protein targeting to vacuole involved in autophagy","type":"exact"},{"name":"down-regulation of protein targeting to vacuole involved in autophagy","type":"exact"},{"name":"downregulation of protein targeting to vacuole involved in autophagy","type":"exact"},{"name":"inhibition of protein targeting to vacuole involved in autophagy","type":"narrow"}],"termid":"GO:1904052"}


id: GO:0060891
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a relatively unspecialized cell acquires specialized features of a limb epidermal granular cell.","definition_xrefs":["GOC:dph","GOC:sdb_2009","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"keratinocyte differentiation","termid":"GO:0030216"},{"relation_name":"part_of","term_name":"limb epidermis development","termid":"GO:0060887"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"limb granular cell differentiation","termid":"GO:0060891"}


id: PBO:0004998
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"snoRNA biogenesis protein (predicted)","termid":"PBO:0004998"}


id: PBO:0072855
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secretion associated Ras related GTPase 1B","termid":"PBO:0072855"}


id: PBO:0056865
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microtubule associated monooxygenase, calponin and LIM domain containing 1","termid":"PBO:0056865"}


id: GO:0061484
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any biological process involved in the maintenance of the steady-state number of hematopoietic stem cells within a population of cells.","definition_xrefs":["PMID:21508411","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"homeostasis of number of cells","termid":"GO:0048872"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hematopoietic stem cell homeostasis","termid":"GO:0061484"}


id: PBO:0050433
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein K pseudogene 4","termid":"PBO:0050433"}


id: GO:0006267
data:
  {"annotated_genes":["SJAG_00247","SJAG_02074","SJAG_02607"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[117005,105223,112517],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902985"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form the nuclear pre-replicative complex, a protein-DNA complex that forms at the eukaryotic DNA replication origin and is required for replication initiation.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pre-replicative complex assembly involved in cell cycle DNA replication","termid":"GO:1902299"},{"relation_name":"part_of","term_name":"nuclear DNA replication","termid":"GO:0033260"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00247":null,"SJAG_02074":null,"SJAG_02607":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"part_of","termid":"GO:0006260"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0065003"},{"rel_name":"part_of","termid":"GO:0006259"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0006260","GO:0007049","GO:0065003","GO:0006259"],"is_obsolete":false,"name":"pre-replicative complex assembly involved in nuclear cell cycle DNA replication","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"nuclear pre-replicative complex assembly","type":"exact"},{"name":"pre-RC complex assembly","type":"broad"},{"name":"pre-replicative complex assembly","type":"broad"},{"name":"pre-replicative complex formation","type":"broad"}],"termid":"GO:0006267","terms_by_termid":{"GO:1902985":null}}


id: GO:0070535
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A histone ubiquitination process in which a polymer of ubiquitin, formed by linkages between lysine residues at position 63 of the ubiquitin monomers, is added to a lysine residue in histone H2A or the variant H2AX.","definition_xrefs":["PMID:18430235","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H2A K63-linked ubiquitination (obsolete GO:0070535)","termid":"GO:0070535"}


id: PBO:0072235
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S20 pseudogene 10","termid":"PBO:0072235"}


id: GO:0042396
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of phosphagen, any of a group of guanidine phosphates that occur in muscle and can be used to regenerate ATP from ADP during muscular contraction.","definition_xrefs":["GOC:jl","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphagen metabolic process","termid":"GO:0006599"},{"relation_name":"is_a","term_name":"modified amino acid biosynthetic process","termid":"GO:0042398"},{"relation_name":"is_a","term_name":"organophosphate biosynthetic process","termid":"GO:0090407"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"phosphagen biosynthetic process","synonyms":[{"name":"phosphagen anabolism","type":"exact"},{"name":"phosphagen biosynthesis","type":"exact"},{"name":"phosphagen formation","type":"exact"},{"name":"phosphagen synthesis","type":"exact"}],"termid":"GO:0042396"}


id: PBO:0049797
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyperpolarization activated cyclic nucleotide gated potassium channel 3","termid":"PBO:0049797"}


id: SO:0001733
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A kind of histone modification site, whereby the 36th residue (a lysine), from the start of the H3 histone protein is methylated.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone_methylation_site","termid":"SO:0001701"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"H3K36_methylation_site","synonyms":[{"name":"H3K36 methylation site","type":"exact"}],"termid":"SO:0001733"}


id: PR:O94727
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- frp2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94727"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ferric/cupric reductase transmembrane component 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC947.05c","synonyms":[{"name":"Spom972h-frp2","type":"exact"},{"name":"ferric-chelate reductase 2 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94727"}


id: PBO:0088672
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ran GTPase binding protein","termid":"PBO:0088672"}


id: GO:0070237
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of activation-induced cell death of T cells.","definition_xrefs":["GOC:add","ISBN:0781765196"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of immune system process","termid":"GO:0002684"},{"relation_name":"is_a","term_name":"positive regulation of T cell apoptotic process","termid":"GO:0070234"},{"relation_name":"is_a","term_name":"regulation of activation-induced cell death of T cells","termid":"GO:0070235"},{"relation_name":"positively_regulates","term_name":"activation-induced cell death of T cells","termid":"GO:0006924"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of activation-induced cell death of T cells","synonyms":[{"name":"activation of activation-induced cell death of T cells","type":"narrow"},{"name":"positive regulation of AICD","type":"broad"},{"name":"positive regulation of activated T cell apoptosis","type":"broad"},{"name":"positive regulation of activation-induced cell death of T lymphocytes","type":"exact"},{"name":"positive regulation of activation-induced cell death of T-cells","type":"exact"},{"name":"positive regulation of activation-induced cell death of T-lymphocytes","type":"exact"},{"name":"positive regulation of antigen-driven apoptosis","type":"broad"},{"name":"stimulation of activation-induced cell death of T cells","type":"narrow"},{"name":"up regulation of activation-induced cell death of T cells","type":"exact"},{"name":"up-regulation of activation-induced cell death of T cells","type":"exact"},{"name":"upregulation of activation-induced cell death of T cells","type":"exact"}],"termid":"GO:0070237"}


id: MONDO:0014942
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any early infantile epileptic encephalopathy in which the cause of the disease is a mutation in the GABRB1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"undetermined early-onset epileptic encephalopathy","termid":"MONDO:0018614"},{"relation_name":"is_a","term_name":"neonatal-onset developmental and epileptic encephalopathy","termid":"MONDO:0100455"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005027"},{"rel_name":"is_a","termid":"MONDO:0700092"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0005027","MONDO:0700092","MONDO:0004736"],"is_obsolete":false,"name":"developmental and epileptic encephalopathy, 45","secondary_identifiers":["UMLS:C4310691","OMIM:617153","DOID:0080428","MEDGEN:934658","GARD:16203"],"synonyms":[{"name":"DEE45","type":"exact"},{"name":"EIEE45","type":"exact"},{"name":"GABRB1 early infantile epileptic encephalopathy","type":"exact"},{"name":"developmental and epileptic encephalopathy 45","type":"exact"},{"name":"early infantile epileptic encephalopathy caused by mutation in GABRB1","type":"exact"},{"name":"epileptic encephalopathy, early infantile, 45","type":"exact"},{"name":"epileptic encephalopathy, early infantile, 45; EIEE45","type":"exact"},{"name":"epileptic encephalopathy, early infantile, type 45","type":"exact"}],"termid":"MONDO:0014942","xrefs":{"Monarch":{"xref_id":"0014942"}}}


id: MONDO:0044984
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disease or disorder that involves the nasolacrimal duct.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lacrimal apparatus disorder","termid":"MONDO:0001854"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"nasolacrimal duct disorder","secondary_identifiers":["MEDGEN:636806","SCTID:95767006","UMLS:C0521744"],"synonyms":[{"name":"disease of nasolacrimal duct","type":"exact"},{"name":"disease or disorder of nasolacrimal duct","type":"exact"},{"name":"disorder of nasolacrimal duct","type":"exact"},{"name":"nasolacrimal duct disease","type":"exact"},{"name":"nasolacrimal duct disease or disorder","type":"exact"}],"termid":"MONDO:0044984","xrefs":{"Monarch":{"xref_id":"0044984"}}}


id: PBO:0006227
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA level","termid":"PBO:0006227"}


id: GO:1990498
data:
  {"annotated_genes":["SJAG_02761","SJAG_03540","SJAG_00918","SJAG_01613","SJAG_02624","SJAG_01224","SJAG_01330","SJAG_03073"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[66683,102258,103323,108240],"is_not":false,"summary":null,"term":"GO:1990498"},{"annotations":[109433],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990941"},{"annotations":[101093,120139,100489,109434],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990537"}]},"cv_name":"cellular_component","definition":"Any microtubule that is part of a mitotic spindle; anchored at one spindle pole.","definition_xrefs":["GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spindle microtubule","termid":"GO:0005876"},{"relation_name":"part_of","term_name":"mitotic spindle","termid":"GO:0072686"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00918":null,"SJAG_01224":null,"SJAG_01330":null,"SJAG_01613":null,"SJAG_02624":null,"SJAG_02761":null,"SJAG_03073":null,"SJAG_03540":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0015630"},{"rel_name":"part_of","termid":"GO:0072686"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0072686","GO:0005575","GO:0015630"],"is_obsolete":false,"name":"mitotic spindle microtubule","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000117":null},"termid":"GO:1990498","terms_by_termid":{"GO:1990498":null,"GO:1990537":null,"GO:1990941":null}}


id: PR:000050482
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the sid2 gene in Schizosaccharomyces pombe.","definition_xrefs":["PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-protein kinase sid2 (Schizosaccharomyces pombe)","pombase_gene_id":"SPAC24B11.11c","synonyms":[{"name":"SPAC24B11.11c","type":"related"},{"name":"Spom-sid2","type":"exact"},{"name":"sid2","type":"related"}],"termid":"PR:000050482"}


id: GO:0030478
data:
  {"annotated_genes":["SJAG_04624"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[91186],"is_not":false,"summary":null,"term":"GO:0030478"}]},"cv_name":"cellular_component","definition":"Polarized accumulation of cytoskeletal proteins (including F-actin) and regulatory proteins in a cell. An example of this is the actin cap found in Saccharomyces cerevisiae.","definition_xrefs":["GOC:mah","PMID:21494665"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"cortical actin cytoskeleton","termid":"GO:0030864"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04624":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005938"},{"rel_name":"part_of","termid":"GO:0015629"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0015629","GO:0005938","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"actin cap","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0000143"],"termid":"GO:0030478","terms_by_termid":{"GO:0030478":null}}


id: PBO:0004776
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleoporin Nup120","termid":"PBO:0004776"}


id: PBO:0002795
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic recombination protein Rec24","termid":"PBO:0002795"}


id: PBO:0049042
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor 33","termid":"PBO:0049042"}


id: PBO:0076831
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"telomere repeat binding bouquet formation protein 2","termid":"PBO:0076831"}


id: FYPO:0004929
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which  the nucleus is broken into multiple small fragments, smaller than a normal nucleus, during the meiotic cell cycle.","definition_xrefs":["PMID:20410137","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fragmented nucleus","termid":"FYPO:0006661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002403"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0002403","FYPO:0001985"],"is_obsolete":false,"name":"fragmented nucleus during meiotic cell cycle","synonyms":[{"name":"fragmented DNA during meiotic cell cycle","type":"related"},{"name":"loss of nuclear integrity during meiotic cell cycle","type":"related"},{"name":"nuclear fragmentation during meiotic cell cycle","type":"exact"}],"termid":"FYPO:0004929"}


id: MONDO:0030332
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"primary ciliary dyskinesia","termid":"MONDO:0016575"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ciliary dyskinesia, primary, 46","secondary_identifiers":["MEDGEN:1780196","UMLS:C5543646","OMIM:619436"],"synonyms":[{"name":"CILD46","type":"exact"},{"name":"ciliary dyskinesia, primary, 46","type":"exact"}],"termid":"MONDO:0030332","xrefs":{"Monarch":{"xref_id":"0030332"}}}


id: MONDO:0001467
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete specific bursitis often of occupational origin (obsolete MONDO:0001467)","secondary_identifiers":["DOID:12223","ICD9:727.2","SCTID:42812006"],"synonyms":[{"name":"specific bursitides often of occupational origin","type":"exact"}],"termid":"MONDO:0001467","xrefs":{"Monarch":{"xref_id":"0001467"}}}


id: PBO:0069851
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1137, pseudogene","termid":"PBO:0069851"}


id: SO:0001142
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The peptide twists in an anticlockwise, left handed manner. The dihedral angles for this turn are: Residue(i): -140 degrees < chi(1) -120 degrees < -20 degrees, -90 degrees psi +120 degrees < +40 degrees, residue(i+1): -140 degrees < phi < -20 degrees, -90 < psi < +40 degrees.","definition_xrefs":["EBIBS:GAR"],"direct_ancestors":[{"relation_name":"is_a","term_name":"serine_threonine_turn","termid":"SO:0001141"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"SO:0000839"}],"interesting_parent_ids":["SO:0000839"],"is_obsolete":false,"name":"st_turn_left_handed_type_one","secondary_identifiers":["BS:00234"],"synonyms":[{"name":"st turn left handed type one","type":"exact"},{"name":"st_turn_il","type":"exact"}],"termid":"SO:0001142"}


id: PBO:0058210
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4502","termid":"PBO:0058210"}


id: GO:0018260
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The addition of phospho-guanosine to a protein amino acid.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein nucleotidylation","termid":"GO:0018175"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein guanylylation","synonyms":[{"name":"protein amino acid guanylylation","type":"exact"}],"termid":"GO:0018260"}


id: PBO:0081499
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 397","termid":"PBO:0081499"}


id: PBO:0087724
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the SAGA transcriptional regulatory complex; not present in SAGA-like complex SLIK/SALSA; required for SAGA-mediated inhibition at some promoters","termid":"PBO:0087724"}


id: GO:0070375
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A MAPK cascade containing at least the ERK5 MAP kinase (MAPK7; also called BMK1). It starts with the activation of a MAP3K, and the consecutive activation of a MPK2K and of ERK5. The cascade can also contain an additional tier: the upstream MAP4K. The kinases in each tier phosphorylate and activate the kinases in the downstream tier. The ERK5 cascade is activated by stress, mitogens, and by G protein-coupled receptors, and results in cellular responses such as cell growth, cell differentiation and development.","definition_xrefs":["PMID:16376520","PMID:16880823","PMID:20811974","PMID:23125017","PMID:28903453"],"direct_ancestors":[{"relation_name":"is_a","term_name":"MAPK cascade","termid":"GO:0000165"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"ERK5 cascade","synonyms":[{"name":"BMK cascade","type":"exact"},{"name":"BMK signaling pathway","type":"exact"},{"name":"BMK signalling pathway","type":"exact"},{"name":"BMK1 cascade","type":"exact"},{"name":"ERK5 signaling pathway","type":"exact"},{"name":"MAPK7 cascade","type":"exact"},{"name":"big MAP kinase signaling cascade","type":"exact"},{"name":"extracellular signal-regulated kinase 5 cascade","type":"exact"}],"termid":"GO:0070375"}


id: MONDO:0010217
data:
  {"annotated_genes":["SJAG_04114"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88303],"is_not":false,"summary":null,"term":"MONDO:0010217"}]},"cv_name":"mondo","definition":"A rare autosomal recessive inherited syndrome. It is characterized by xeroderma pigmentosum, mental retardation, dwarfism, hypogonadism, and neurologic abnormalities.","definition_xrefs":["NCIT:C84666"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04114":null},"genotype_count":0,"is_obsolete":false,"name":"de Sanctis-Cacchione syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["ICD9:759.89","DOID:0112158","MEDGEN:75550","Orphanet:1569","UMLS:C0265201","OMIM:278800","icd11.foundation:594988031","SCTID:414673004","MESH:C535992","GARD:8276"],"synonyms":[{"name":"De Sanctis Cacchione Syndrome","type":"exact"},{"name":"de Sanctis-Cacchione syndrome","type":"exact"},{"name":"xerodermic idiocy","type":"related"}],"termid":"MONDO:0010217","terms_by_termid":{"MONDO:0010217":null},"xrefs":{"Monarch":{"xref_id":"0010217"}}}


id: MONDO:1011334
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Mouth mucosa disorder that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mouth disorder, non-human animal","termid":"MONDO:1011333"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mouth mucosa disorder, non-human animal","termid":"MONDO:1011334","xrefs":{"Monarch":{"xref_id":"1011334"}}}


id: GO:0046422
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: violaxanthin + 2 ascorbate = zeaxanthin + 2 dehydroascorbate + 2 H2O; and antheraxanthin + ascorbate = zeaxanthin + dehydroascorbate + H2O.","definition_xrefs":["EC:1.23.5.1","GOC:ai","ISBN:0471331309"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, reducing C-O-C group as acceptor","termid":"GO:0120546"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"violaxanthin de-epoxidase activity","secondary_identifiers":["RHEA:32371"],"synonyms":[{"name":"VDE","type":"related"},{"name":"violaxanthin:ascorbate oxidoreductase activity","type":"related"}],"termid":"GO:0046422"}


id: GO:0007378
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Formation of the amnioserosa, an epithelium that occupies a hole in the embryonic dorsal epidermis. This occurs by the transformation of a narrow strip of cells at the dorsal midline of the blastoderm from columnar to squamous cells, accompanied by a lateral shift.","definition_xrefs":["ISBN:0879694238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"gastrulation involving germ band extension","termid":"GO:0010004"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"amnioserosa formation","termid":"GO:0007378"}


id: GO:0060660
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the epidermis of the nipple sheath is uplifted to form an umbrella-like projection.","definition_xrefs":["PMID:12558599","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epidermis morphogenesis","termid":"GO:0048730"},{"relation_name":"part_of","term_name":"nipple morphogenesis","termid":"GO:0060658"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"epidermis morphogenesis involved in nipple formation","termid":"GO:0060660"}


id: PBO:0063104
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Parkinsonism associated deglycase","termid":"PBO:0063104"}


id: PBO:0045100
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DMAC1 pseudogene 1","termid":"PBO:0045100"}


id: MONDO:0018563
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"skeletal dysplasia","termid":"MONDO:0018230"},{"relation_name":"is_a","term_name":"dysostosis","termid":"MONDO:0018234"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"adactyly of foot","secondary_identifiers":["MEDGEN:539387","UMLS:C0265641","SCTID:66345008","Orphanet:435623"],"synonyms":[{"name":"congenital absence of toes","type":"exact"}],"termid":"MONDO:0018563","xrefs":{"Monarch":{"xref_id":"0018563"}}}


id: FYPO:0002805
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which sodium ion import into the cell is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal transport","termid":"FYPO:0001071"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000257","FYPO:0001312","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"normal sodium import","synonyms":[{"name":"normal sodium import across plasma membrane","type":"exact"},{"name":"normal sodium import during mitotic cell cycle","type":"related"},{"name":"normal sodium import during vegetative growth","type":"exact"},{"name":"normal sodium import into cell","type":"exact"},{"name":"normal sodium ion import into cell","type":"exact"},{"name":"normal sodium uptake","type":"exact"}],"termid":"FYPO:0002805"}


id: FYPO:0002406
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a vegetatively growing cell is viable, contains one or more septa, and is curved along the long axis, and the cell diameter is larger than normal and the cell length is shorter than normal. In a curved cell, the long axis follows a smooth bend rather than a straight line.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"septated vegetative cell","termid":"FYPO:0002342"},{"relation_name":"is_a","term_name":"septated vegetative cell","termid":"FYPO:0002342"},{"relation_name":"is_a","term_name":"viable curved stubby vegetative cell","termid":"FYPO:0002405"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0000005","FYPO:0000004","FYPO:0000002","FYPO:0001985","FYPO:0001320"],"is_obsolete":false,"name":"viable curved stubby septated vegetative cell","synonyms":[{"name":"curved stubby septated viable cell","type":"exact"},{"name":"viable curved stubby septated cell during vegetative growth","type":"exact"},{"name":"viable curved stubby septated vegetative cell during mitotic cell cycle","type":"related"},{"name":"viable curved watermelon-shaped septated vegetative cell","type":"exact"}],"termid":"FYPO:0002406"}


id: MONDO:0011144
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare condition that affects the nervous system. Signs and symptoms of the condition generally develop between ages 18 months and 8 years, although later onset cases have been reported. Affected people may experience loss of muscle coordination (ataxia), seizures that do not respond to medications, muscle twitches (myoclonus), visual impairment, and developmental regression (loss of previously acquired skills). It occurs predominantly in people of Portuguese, Indian, Pakistani, or Czech ancestry. CLN6-NCL is caused by changes (mutations) in the CLN6 gene and is inherited in an autosomal recessive manner. Treatment options are limited to therapies that can help relieve some of the symptoms.","direct_ancestors":[{"relation_name":"is_a","term_name":"ceroid lipofuscinosis, neuronal, 6B (Kufs type)","termid":"MONDO:0008768"},{"relation_name":"is_a","term_name":"late infantile neuronal ceroid lipofuscinosis","termid":"MONDO:0015674"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002561"},{"rel_name":"is_a","termid":"MONDO:0002039"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002525"}],"interesting_parent_ids":["MONDO:0002039","MONDO:0002561","MONDO:0002525","MONDO:0005066","MONDO:0005559"],"is_obsolete":false,"name":"ceroid lipofuscinosis, neuronal, 6A","secondary_identifiers":["DOID:0110729","OMIM:601780","MEDGEN:1790423","Orphanet:228363","UMLS:C5551375","MESH:C566627","GARD:1224"],"synonyms":[{"name":"CLN6","type":"exact"},{"name":"CLN6 disease","type":"related"},{"name":"CLN6 disease, adult Kufs type A (subtype)","type":"related"},{"name":"CLN6 disease, late infantile (subtype)","type":"related"},{"name":"CLN6 late infantile neuronal ceroid lipofuscinosis","type":"exact"},{"name":"CLN6A","type":"exact"},{"name":"ceroid lipofuscinosis, neuronal, 6","type":"related"},{"name":"ceroid lipofuscinosis, neuronal, 6, variable age at onset","type":"related"},{"name":"ceroid lipofuscinosis, neuronal, type 6","type":"exact"},{"name":"late infantile neuronal ceroid lipofuscinosis caused by mutation in CLN6","type":"exact"},{"name":"neuronal ceroid lipofuscinosis 6","type":"exact"},{"name":"neuronal ceroid lipofuscinosis 6 variable age of onset","type":"exact"},{"name":"neuronal ceroid lipofuscinosis type 6","type":"exact"},{"name":"neuronal ceroid lipofuscinosis, Gypsy/Indian early juvenile variant","type":"related"},{"name":"neuronal ceroid lipofuscinosis, late infantile, variant","type":"exact"},{"name":"vLINCL","type":"exact"}],"termid":"MONDO:0011144","xrefs":{"Monarch":{"xref_id":"0011144"}}}


id: GO:0036287
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iloperidone stimulus.","definition_xrefs":["GOC:hp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to ether","termid":"GO:0045472"},{"relation_name":"is_a","term_name":"response to monoamine","termid":"GO:0071867"},{"relation_name":"is_a","term_name":"response to ketone","termid":"GO:1901654"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to iloperidone","termid":"GO:0036287"}


id: PBO:0068668
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 49, pseudogene","termid":"PBO:0068668"}


id: PBO:0016056
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"queuosine salvage protein","termid":"PBO:0016056"}


id: PR:Q09329
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An E3 ubiquitin-protein ligase UBR7 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02760"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein mlo2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC4.05","secondary_identifiers":["UniProtKB:Q09329"],"synonyms":[{"name":"Spom972h-UBR7","type":"exact"}],"termid":"PR:Q09329"}


id: PBO:0085377
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Plasma membrane arginine permease; requires phosphatidyl ethanolamine (PE) for localization, exclusively associated with lipid rafts; mutation confers canavanine resistance; CAN1 has a paralog, ALP1, that arose from the whole genome duplication","termid":"PBO:0085377"}


id: MONDO:0008820
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete arthrogryposis, distal, with hypopituitarism, intellectual disability, and facial anomalies (obsolete MONDO:0008820)","termid":"MONDO:0008820","xrefs":{"Monarch":{"xref_id":"0008820"}}}


id: PBO:0066815
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 114","termid":"PBO:0066815"}


id: MOD:00308
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cyclizes an L-glutamine residue to form a carboxyl-terminal L-glutamimide.","definition_xrefs":["RESID:AA0303","Unimod:23#Q","PubMed:14593103","PubMed:12771378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclized residue","termid":"MOD:00601"},{"relation_name":"is_a","term_name":"dehydrated residue","termid":"MOD:00704"},{"relation_name":"is_a","term_name":"modified L-glutamine residue","termid":"MOD:00907"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-glutamimide","synonyms":[{"name":"(3S)-3-aminopiperidine-2,6-dione","type":"exact"},{"name":"2-aminopentanimide","type":"exact"},{"name":"3-amino-2,6-piperidinedione","type":"exact"},{"name":"Dehydrated","type":"related"},{"name":"Dehydration","type":"related"},{"name":"L-glutamimide","type":"exact"},{"name":"alpha-aminoglutarimide","type":"exact"}],"termid":"MOD:00308"}


id: GO:0016133
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of brassinosteroids, any of a group of steroid derivatives that occur at very low concentrations in plant tissues and may have hormone-like effects.","definition_xrefs":["ISBN:0192801023"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phytosteroid catabolic process","termid":"GO:0016130"},{"relation_name":"is_a","term_name":"brassinosteroid metabolic process","termid":"GO:0016131"},{"relation_name":"is_a","term_name":"hormone catabolic process","termid":"GO:0042447"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"brassinosteroid catabolic process","synonyms":[{"name":"brassinosteroid breakdown","type":"exact"},{"name":"brassinosteroid catabolism","type":"exact"},{"name":"brassinosteroid degradation","type":"exact"}],"termid":"GO:0016133"}


id: MONDO:0001520
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disorder characterized by the recurrent failure to resist the impulse to steal items of little intrinsic value; the individual experiences a rising subjective sense of tension before the theft and a sense of gratification or relief during the theft.","definition_xrefs":["NCIT:C94333"],"direct_ancestors":[{"relation_name":"is_a","term_name":"impulse control disorder","termid":"MONDO:0001162"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kleptomania","secondary_identifiers":["icd11.foundation:804604349","ICD9:312.32","UMLS:C0022734","DOID:12400","SCTID:69361009","MEDGEN:5974","ICD10CM:F63.2"],"synonyms":[{"name":"kleptomania","type":"exact"},{"name":"pathological stealing","type":"exact"}],"termid":"MONDO:0001520","xrefs":{"Monarch":{"xref_id":"0001520"}}}


id: FYPO:0008013
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of inositol hexakisphosphate kinase activity is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PMID:35536002","PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal catalytic activity","termid":"FYPO:0000660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000652","FYPO:0000257"],"is_obsolete":false,"name":"normal inositol hexakisphosphate kinase activity","termid":"FYPO:0008013"}


id: PBO:0117438
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"estradiol 17-beta-dehydrogenase 8-related","termid":"PBO:0117438"}


id: GO:0032109
data:
  {"annotated_genes":["SJAG_02292","SJAG_02331"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[68093,71088],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903833"}]},"cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of a response to nutrient levels.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of response to nutrient levels","termid":"GO:0032107"},{"relation_name":"is_a","term_name":"positive regulation of response to stimulus","termid":"GO:0048584"},{"relation_name":"positively_regulates","term_name":"response to nutrient levels","termid":"GO:0031667"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02292":null,"SJAG_02331":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of response to nutrient levels","references_by_uniquename":{"GO_REF:0000117":null},"synonyms":[{"name":"activation of response to nutrient levels","type":"narrow"},{"name":"stimulation of response to nutrient levels","type":"narrow"},{"name":"up regulation of response to nutrient levels","type":"exact"},{"name":"up-regulation of response to nutrient levels","type":"exact"},{"name":"upregulation of response to nutrient levels","type":"exact"}],"termid":"GO:0032109","terms_by_termid":{"GO:1903833":null}}


id: PATO:0001860
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A coordination which is relatively low.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"coordinated","termid":"PATO:0000769"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased coordination","synonyms":[{"name":"low coordination","type":"exact"}],"termid":"PATO:0001860"}


id: FYPO:0003075
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a protein kinase activity is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal catalytic activity","termid":"FYPO:0000660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000652","FYPO:0000257"],"is_obsolete":false,"name":"normal protein kinase activity","termid":"FYPO:0003075"}


id: PR:O43020
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 30S ribosomal protein S16 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02505"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"37S ribosomal protein S16, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC354.06","secondary_identifiers":["UniProtKB:O43020"],"synonyms":[{"name":"Spom972h-rpsP","type":"exact"}],"termid":"PR:O43020"}


id: PBO:0027419
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_Golgi_apparatus,_with_protein_mislocalized_to_endoplasmic_reticulum","termid":"PBO:0027419"}


id: PBO:0039146
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adenylate kinase 3","termid":"PBO:0039146"}


id: GO:0016331
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of embryonic epithelia are generated and organized.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"morphogenesis of an epithelium","termid":"GO:0002009"},{"relation_name":"is_a","term_name":"embryonic morphogenesis","termid":"GO:0048598"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"morphogenesis of embryonic epithelium","termid":"GO:0016331"}


id: GO:0140300
data:
  {"annotated_genes":["SJAG_04588"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92443],"is_not":false,"summary":null,"term":"GO:0140300"}]},"cv_name":"biological_process","definition":"The process in which serine is transported from the cytosol into the mitochondrial matrix.","definition_xrefs":["PMID:30442778"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid transmembrane transport","termid":"GO:0003333"},{"relation_name":"is_a","term_name":"serine transport","termid":"GO:0032329"},{"relation_name":"is_a","term_name":"import into the mitochondrion","termid":"GO:0170036"},{"relation_name":"is_a","term_name":"carboxylic acid transmembrane transport","termid":"GO:1905039"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04588":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0055085","GO:0051179","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"serine import into mitochondrion","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0140300","terms_by_termid":{"GO:0140300":null}}


id: PBO:0086664
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; identified by expression profiling and mass spectrometry","termid":"PBO:0086664"}


id: PBO:0069950
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1243, pseudogene","termid":"PBO:0069950"}


id: PBO:0027742
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_phosphorylation_during_cellular_response_to_camptothecin","termid":"PBO:0027742"}


id: PBO:0052690
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 14","termid":"PBO:0052690"}


id: FYPO:0008003
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein at a site of mechanical stress on the cell surface is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mlr","PMID:34666001"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization","termid":"FYPO:0003627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0000002","FYPO:0000138"],"is_obsolete":false,"name":"normal protein localization to site of mechanical stress","termid":"FYPO:0008003"}


id: PBO:0060639
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear receptor coactivator 2","termid":"PBO:0060639"}


id: PBO:0005062
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HEAT repeat protein, involved in localization to plasma membrane (predicted)","termid":"PBO:0005062"}


id: PBO:0061908
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 1 subfamily A member 2","termid":"PBO:0061908"}


id: PBO:0042121
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil domain containing 194","termid":"PBO:0042121"}


id: GO:0009440
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of cyanate, NCO-, the anion of cyanic acid.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catabolic process","termid":"GO:0009056"},{"relation_name":"is_a","term_name":"cyanate metabolic process","termid":"GO:0009439"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"cyanate catabolic process","synonyms":[{"name":"cyanate breakdown","type":"exact"},{"name":"cyanate catabolism","type":"exact"},{"name":"cyanate degradation","type":"exact"}],"termid":"GO:0009440"}


id: GO:0016899
data:
  {"annotated_genes":["SJAG_00265"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[77952],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003885"}]},"cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces an oxygen molecule.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on CH-OH group of donors","termid":"GO:0016614"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00265":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["EC:1.1.3.-"],"termid":"GO:0016899","terms_by_termid":{"GO:0003885":null}}


id: PBO:0109047
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Clr6 histone deacetylase complex MRG family subunit Alp13/Eaf3","termid":"PBO:0109047"}


id: GO:0003350
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the pulmonary myocardium over time, from its initial formation to the mature structure. The pulmonary myocardium is the myocardial tissue present in the pulmonary vein.","definition_xrefs":["PMID:17638577","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"striated muscle tissue development","termid":"GO:0014706"},{"relation_name":"part_of","term_name":"venous blood vessel development","termid":"GO:0060841"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pulmonary myocardium development","termid":"GO:0003350"}


id: MONDO:0010212
data:
  {"annotated_genes":["SJAG_00995"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88492],"is_not":false,"summary":null,"term":"MONDO:0010212"}]},"cv_name":"mondo","definition":"Any xeroderma pigmentosum in which the cause of the disease is a mutation in the ERCC2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xeroderma pigmentosum-Cockayne syndrome complex","termid":"MONDO:0016354"},{"relation_name":"is_a","term_name":"xeroderma pigmentosum","termid":"MONDO:0019600"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00995":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0021190"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0005066","MONDO:0021190"],"is_obsolete":false,"name":"xeroderma pigmentosum group D","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:75656","DOID:0110845","NCIT:C3967","SCTID:68637004","Orphanet:276258","MESH:C562591","GARD:16452","OMIM:278730","UMLS:C0268138"],"synonyms":[{"name":"ERCC2 xeroderma pigmentosum","type":"exact"},{"name":"XP group D","type":"exact"},{"name":"XP group H","type":"exact"},{"name":"XP, Group D","type":"related"},{"name":"XP, Group H","type":"related"},{"name":"XP, Group H, formerly","type":"related"},{"name":"XP-D","type":"exact"},{"name":"XP4","type":"exact"},{"name":"XP4 xeroderma pigmentosum VIII","type":"related"},{"name":"XP4 xeroderma pigmentosum VIII, formerly","type":"related"},{"name":"XP8","type":"exact"},{"name":"XPD","type":"exact"},{"name":"XPDC","type":"exact"},{"name":"XPH","type":"exact"},{"name":"xeroderma pigmentosum 4","type":"related"},{"name":"xeroderma pigmentosum IV","type":"exact"},{"name":"xeroderma pigmentosum VIII","type":"exact"},{"name":"xeroderma pigmentosum caused by mutation in ERCC2","type":"exact"},{"name":"xeroderma pigmentosum group D","type":"exact"},{"name":"xeroderma pigmentosum group type D","type":"exact"},{"name":"xeroderma pigmentosum, complementation group D","type":"related"},{"name":"xeroderma pigmentosum, complementation group type D","type":"exact"},{"name":"xeroderma pigmentosum, group D","type":"exact"}],"termid":"MONDO:0010212","terms_by_termid":{"MONDO:0010212":null},"xrefs":{"Monarch":{"xref_id":"0010212"}}}


id: PR:P41005
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mes1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P41005"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein mes1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC5D6.08c","synonyms":[{"name":"Spom972h-mes1","type":"exact"}],"termid":"PR:P41005"}


id: PBO:0057014
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 103b-1","termid":"PBO:0057014"}


id: FYPO:0002914
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription occurs to a greater extent than normal in intergenic regions. All genes, or a specific subset of genes, may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased transcription during vegetative growth","termid":"FYPO:0000780"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000294","FYPO:0006551","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"increased intergenic transcription","synonyms":[{"name":"increased intergenic transcription during mitotic cell cycle","type":"related"},{"name":"increased transcription at intergenic regions during vegetative growth","type":"exact"},{"name":"increased transcription from intergenic regions","type":"exact"},{"name":"increased transcription from intergenic regions during vegetative growth","type":"exact"}],"termid":"FYPO:0002914"}


id: GO:0003206
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cardiac chamber is generated and organized. A cardiac chamber is an enclosed cavity within the heart.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"},{"relation_name":"part_of","term_name":"heart morphogenesis","termid":"GO:0003007"},{"relation_name":"part_of","term_name":"cardiac chamber development","termid":"GO:0003205"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cardiac chamber morphogenesis","synonyms":[{"name":"heart chamber morphogenesis","type":"exact"}],"termid":"GO:0003206"}


id: GO:0060136
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A reproductive process occurring in the embryo or fetus that allows the embryo or fetus to develop within the mother.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multicellular organismal reproductive process","termid":"GO:0048609"},{"relation_name":"part_of","term_name":"female pregnancy","termid":"GO:0007565"},{"relation_name":"part_of","term_name":"embryo development ending in birth or egg hatching","termid":"GO:0009792"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"embryonic process involved in female pregnancy","termid":"GO:0060136"}


id: GO:0048277
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The initial attachment of a transport vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, during a non-exocytotic process.","definition_xrefs":["GOC:jid"],"gene_count":0,"genotype_count":0,"name":"obsolete nonexocytotic vesicle docking (obsolete GO:0048277)","synonyms":[{"name":"non-exocytotic vesicle docking","type":"exact"},{"name":"nonexocytotic vesicle docking","type":"exact"}],"termid":"GO:0048277"}


id: GO:0030647
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving an aminoglycoside antibiotic, any member of a group of broad spectrum antibiotics, of similar toxicity and pharmacology, that contain an aminodeoxysugar, an amino- or guanidino-substituted inositol ring, and one or more residues of other sugars. The group includes streptomycin, neomycin, framycetin, kanamycin, paromomycin, and gentamicin.","definition_xrefs":["GOC:mah","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycoside metabolic process","termid":"GO:0016137"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"aminoglycoside antibiotic metabolic process","synonyms":[{"name":"aminoglycoside antibiotic metabolism","type":"exact"}],"termid":"GO:0030647"}


id: PBO:0116758
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMARCE1 pseudogene 4","termid":"PBO:0116758"}


id: PBO:0051737
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"integrator complex subunit 6 like","termid":"PBO:0051737"}


id: GO:1900336
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of methane biosynthetic process from carbon monoxide.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cellular respiration","termid":"GO:0043457"},{"relation_name":"is_a","term_name":"regulation of alkane biosynthetic process","termid":"GO:1901577"},{"relation_name":"regulates","term_name":"methane biosynthetic process from carbon monoxide","termid":"GO:2001134"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006091"],"is_obsolete":false,"name":"regulation of methane biosynthetic process from carbon monoxide","termid":"GO:1900336"}


id: GO:0090307
data:
  {"annotated_genes":["SJAG_03062","SJAG_03073","SJAG_04464","SJAG_01297","SJAG_02332","SJAG_04841","SJAG_03116","SJAG_03835","SJAG_02609","SJAG_01224","SJAG_07018","SJAG_00773","SJAG_02336","SJAG_02761","SJAG_01215","SJAG_04901","SJAG_00794","SJAG_02246","SJAG_03540","SJAG_01546","SJAG_04745","SJAG_01613"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[98744,102880,111560,112540,120676],"is_not":false,"summary":null,"term":"GO:0090307"},{"annotations":[77584,79589,97173],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000073"},{"annotations":[98642,75841,104951,101102],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:1990810"},{"annotations":[101738,105803,100499,103338,110202,99155,102273],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0061804"},{"annotations":[101108,103339],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140641"},{"annotations":[78943,101109,96634,110803,99156],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0051256"},{"annotations":[113398],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0110161"},{"annotations":[73183],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1901673"}]},"cv_name":"biological_process","definition":"Mitotic bipolar spindle assembly begins with spindle microtubule nucleation from the separated spindle pole body, includes spindle elongation during prometaphase, and is complete when all kinetochores are stably attached the spindle, and the spindle assembly checkpoint is satisfied.","definition_xrefs":["GOC:vw","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitotic spindle organization","termid":"GO:0007052"},{"relation_name":"is_a","term_name":"spindle assembly","termid":"GO:0051225"},{"relation_name":"part_of","term_name":"mitotic sister chromatid segregation","termid":"GO:0000070"}],"gene_count":22,"genes_by_uniquename":{"SJAG_00773":null,"SJAG_00794":null,"SJAG_01215":null,"SJAG_01224":null,"SJAG_01297":null,"SJAG_01546":null,"SJAG_01613":null,"SJAG_02246":null,"SJAG_02332":null,"SJAG_02336":null,"SJAG_02609":null,"SJAG_02761":null,"SJAG_03062":null,"SJAG_03073":null,"SJAG_03116":null,"SJAG_03540":null,"SJAG_03835":null,"SJAG_04464":null,"SJAG_04745":null,"SJAG_04841":null,"SJAG_04901":null,"SJAG_07018":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0000226"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"part_of","termid":"GO:0000070"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0000070","GO:0007049","GO:0044085","GO:0000226","GO:0007010","GO:0008150"],"is_obsolete":false,"name":"mitotic spindle assembly","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"spindle assembly involved in mitosis","type":"exact"}],"termid":"GO:0090307","terms_by_termid":{"GO:0000073":null,"GO:0051256":null,"GO:0061804":null,"GO:0090307":null,"GO:0110161":null,"GO:0140641":null,"GO:1901673":null,"GO:1990810":null}}


id: PBO:0039193
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"akirin 2 pseudogene 1","termid":"PBO:0039193"}


id: PBO:0003107
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA Glutamine","termid":"PBO:0003107"}


id: PR:O94418
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A nuclear pore complex protein Nup93 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO04972"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 87 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1620.11","secondary_identifiers":["UniProtKB:O94418"],"synonyms":[{"name":"Spom972h-NUP93","type":"exact"}],"termid":"PR:O94418"}


id: MONDO:0016097
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Symptomatic forms of Duchenne and Becker muscular dystrophies (DMD and BMD) in females carriers are characterized by variable degrees of muscle weakness due to progressive skeletal myopathy, sometimes associated with dilated cardiomyopathy or left ventricle dilation.","definition_xrefs":["Orphanet:206546"],"direct_ancestors":[{"relation_name":"is_a","term_name":"progressive muscular dystrophy","termid":"MONDO:0016106"},{"relation_name":"is_a","term_name":"familial dilated cardiomyopathy","termid":"MONDO:0016333"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"},{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005336","MONDO:0005267"],"is_obsolete":false,"name":"symptomatic form of muscular dystrophy of Duchenne and Becker in female carriers","secondary_identifiers":["UMLS:C4707359","GARD:20350","MEDGEN:1631985","SCTID:765197008"],"termid":"MONDO:0016097","xrefs":{"Monarch":{"xref_id":"0016097"}}}


id: PBO:0045328
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DOCK6 antisense RNA 1","termid":"PBO:0045328"}


id: PBO:0072402
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S27 pseudogene 7","termid":"PBO:0072402"}


id: PBO:0026827
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_regulation_of_mitotic_DNA_replication_initiation","termid":"PBO:0026827"}


id: MONDO:0007878
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Increased collapsibility of the larynx.","definition_xrefs":["NCIT:C98971"],"direct_ancestors":[{"relation_name":"is_a","term_name":"laryngeal disorder","termid":"MONDO:0004382"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital laryngomalacia","secondary_identifiers":["UMLS:C0264303","ICD9:748.3","DOID:0080833","SCTID:253737007","MEDGEN:120500","GARD:6865","ICD10CM:Q31.5","icd11.foundation:64182721","OMIM:150280","Orphanet:2373","MESH:D055092","MedDRA:10060786"],"synonyms":[{"name":"congenital laryngeal stridor","type":"related"},{"name":"laryngomalacia","type":"related"},{"name":"laryngomalacia congenital","type":"related"}],"termid":"MONDO:0007878","xrefs":{"Monarch":{"xref_id":"0007878"}}}


id: FYPO:0004780
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the plasma membrane is decreased, and some of the protein is present in the cytoplasm instead.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"protein mislocalized to cytoplasm during vegetative growth","termid":"FYPO:0000783"},{"relation_name":"is_a","term_name":"protein mislocalized to cytoplasm during vegetative growth","termid":"FYPO:0000783"},{"relation_name":"is_a","term_name":"decreased protein localization to plasma membrane during vegetative growth","termid":"FYPO:0008198"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000138","FYPO:0005447","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"decreased protein localization to plasma membrane, with protein mislocalized to cytoplasm, during vegetative growth","synonyms":[{"name":"decreased protein localisation to plasma membrane, with protein mislocalised to cytoplasm, during vegetative growth","type":"exact"},{"name":"decreased protein localization in plasma membrane, with protein mislocalized to cytoplasm, during vegetative growth","type":"exact"},{"name":"decreased protein localization to plasma membrane, with protein mislocalized to cytoplasm, during mitotic cell cycle","type":"related"},{"name":"reduced protein localization to plasma membrane, with protein mislocalized to cytoplasm, during vegetative growth","type":"exact"}],"termid":"FYPO:0004780"}


id: PBO:0040259
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy related 12 pseudogene 2","termid":"PBO:0040259"}


id: PBO:0039651
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adaptor related protein complex 1 subunit mu 2","termid":"PBO:0039651"}


id: GO:0008829
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: dCTP + H2O = dUTP + NH3.","definition_xrefs":["EC:3.5.4.13"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines","termid":"GO:0016814"},{"relation_name":"is_a","term_name":"deaminase activity","termid":"GO:0019239"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016810"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016787","GO:0016810","GO:0003824"],"is_obsolete":false,"name":"dCTP deaminase activity","secondary_identifiers":["MetaCyc:DCTP-DEAM-RXN","Reactome:R-HSA-180632","RHEA:22680"],"synonyms":[{"name":"5-methyl-dCTP deaminase activity","type":"related"},{"name":"dCTP aminohydrolase activity","type":"related"},{"name":"deoxycytidine triphosphate deaminase activity","type":"related"}],"termid":"GO:0008829"}


id: GO:0071208
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to the downstream cleavage product (DCP) generated by histone pre-mRNA 3'-end processing.","definition_xrefs":["PMID:19470752"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA binding","termid":"GO:0003723"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003723"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003723","GO:0003674"],"is_obsolete":false,"name":"histone pre-mRNA DCP binding","termid":"GO:0071208"}


id: GO:0032539
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of any behavior associated with finding a host organism.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of host-seeking behavior","termid":"GO:0032538"},{"relation_name":"is_a","term_name":"negative regulation of behavior","termid":"GO:0048521"},{"relation_name":"negatively_regulates","term_name":"host-seeking behavior","termid":"GO:0032537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of host-seeking behavior","synonyms":[{"name":"down regulation of host-seeking behavior","type":"exact"},{"name":"down-regulation of host-seeking behavior","type":"exact"},{"name":"downregulation of host-seeking behavior","type":"exact"},{"name":"inhibition of host-seeking behavior","type":"narrow"},{"name":"negative regulation of host-seeking behaviour","type":"exact"}],"termid":"GO:0032539"}


id: GO:0047300
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: pyridoxamine + pyruvate = L-alanine + pyridoxal.","definition_xrefs":["RHEA:12841","EC:2.6.1.30"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016769","GO:0003824"],"is_obsolete":false,"name":"pyridoxamine-pyruvate transaminase activity","secondary_identifiers":["KEGG_REACTION:R01712","MetaCyc:2.6.1.30-RXN"],"synonyms":[{"name":"pyridoxamine--pyruvate aminotransferase activity","type":"related"},{"name":"pyridoxamine-pyruvate aminotransferase activity","type":"exact"},{"name":"pyridoxamine-pyruvic transaminase","type":"broad"},{"name":"pyridoxamine:pyruvate aminotransferase activity","type":"related"},{"name":"pyridoxamineu-pyruvic transaminase activity","type":"related"}],"termid":"GO:0047300"}


id: PBO:0044099
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cancer/testis antigen family 47 member A7","termid":"PBO:0044099"}


id: GO:0062035
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events required for an organism to receive a cold temperature stimulus, convert it to a molecular signal, and recognize and characterize the signal.","definition_xrefs":["PMID:21335241"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thermoception","termid":"GO:0050955"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sensory perception of cold stimulus","termid":"GO:0062035"}


id: MONDO:0003835
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A carcinoma that arises from glandular epithelial cells of the cardia of stomach.","direct_ancestors":[{"relation_name":"is_a","term_name":"gastric cardia carcinoma","termid":"MONDO:0003834"},{"relation_name":"is_a","term_name":"gastric adenocarcinoma","termid":"MONDO:0005036"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992"],"is_obsolete":false,"name":"gastric cardia adenocarcinoma","secondary_identifiers":["MEDGEN:232543","NCIT:C5247","DOID:6271","UMLS:C1333762"],"synonyms":[{"name":"adenocarcinoma of cardia of stomach","type":"exact"},{"name":"adenocarcinoma of gastric cardia","type":"related"},{"name":"adenocarcinoma of the cardia of the stomach","type":"exact"},{"name":"adenocarcinoma of the gastric cardia","type":"exact"},{"name":"cardia of stomach adenocarcinoma","type":"exact"}],"termid":"MONDO:0003835","xrefs":{"Monarch":{"xref_id":"0003835"}}}


id: PBO:0047066
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 131 member A","termid":"PBO:0047066"}


id: PBO:0053250
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LIM homeobox 4","termid":"PBO:0053250"}


id: FYPO:0001092
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype that affects the binding of a gene product to another substance. The affected gene product may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"molecular function phenotype","termid":"FYPO:0000652"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000652"],"is_obsolete":false,"name":"binding phenotype","synonyms":[{"name":"fission yeast binding phenotype","type":"exact"}],"termid":"FYPO:0001092"}


id: PBO:0042207
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin I family member 2","termid":"PBO:0042207"}


id: PBO:0042657
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CEA cell adhesion molecule 6","termid":"PBO:0042657"}


id: PBO:0059577
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metallothionein 4","termid":"PBO:0059577"}


id: MONDO:0021726
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Abdominal cystic lymphangioma is a benign (noncancerous) malformation of the lymphatic vessels in the abdomen. These vessels carry lymph, a fluid that contains white blood cells that fight infection, throughout the body. The severity of the condition and the associated features vary from person to person. When present, signs and symptoms may include abdominal pain, an increase in waist circumference, an abdominal mass, intestinal obstruction, and/or volvulus (a twisting of the intestines). The cause of abdominal cystic lymphangioma is poorly understood; however, scientists suspect that it is a congenital anomaly. Most cases are diagnosed in people with no family history of the condition. Treatment varies based on the severity of the condition. People with small malformations that do not cause any symptoms may simply be followed with regular imaging studies to monitor for progression. Some of these cases may resolve spontaneously without treatment. When necessary, surgical excision is often the treatment of choice since it is associated with the lowest risk of recurrence..","definition_xrefs":["GARD:0000439"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cystic hygroma","termid":"MONDO:0009761"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"abdominal cystic lymphangioma","secondary_identifiers":["GARD:439","MEDGEN:419287","MESH:C535553","UMLS:C2930929","NCIT:C27508"],"synonyms":[{"name":"RCL","type":"related"},{"name":"abdomen cystic lymphangioma","type":"exact"},{"name":"abdominal retroperitoneal lymphangioma","type":"related"},{"name":"retroperitoneal cystic lymphangioma","type":"related"}],"termid":"MONDO:0021726","xrefs":{"Monarch":{"xref_id":"0021726"}}}


id: PBO:0075855
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SSX family member 4","termid":"PBO:0075855"}


id: GO:0050285
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: O-sinapoylcholine + H2O = choline + H+ + sinapate.","definition_xrefs":["RHEA:10016","EC:3.1.1.49"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxylic ester hydrolase activity","termid":"GO:0052689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016787","GO:0016788"],"is_obsolete":false,"name":"sinapine esterase activity","secondary_identifiers":["KEGG_REACTION:R02381","MetaCyc:SINAPINE-ESTERASE-RXN"],"synonyms":[{"name":"aromatic choline esterase activity","type":"related"},{"name":"sinapoylcholine sinapohydrolase activity","type":"related"}],"termid":"GO:0050285"}


id: PBO:0060250
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MYCL antisense RNA 1","termid":"PBO:0060250"}


id: PBO:0053063
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"linker for activation of T cells family member 2","termid":"PBO:0053063"}


id: GO:1904101
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an acadesine stimulus.","definition_xrefs":["GOC:TermGenie","PMID:20802119","GOC:mr","GO_REF:0000071"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to nitrogen compound","termid":"GO:1901698"},{"relation_name":"is_a","term_name":"response to oxygen-containing compound","termid":"GO:1901700"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to acadesine","termid":"GO:1904101"}


id: PBO:0059516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrially encoded L-strand promoter","termid":"PBO:0059516"}


id: PBO:0073862
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC9A9 antisense RNA 1","termid":"PBO:0073862"}


id: FYPO:0006257
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle phenotype in which the duration of prophase of mitosis normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal mitotic cell cycle phase","termid":"FYPO:0002740"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0001312","FYPO:0000002"],"is_obsolete":false,"name":"normal duration of mitotic prophase","synonyms":[{"name":"normal duration of mitotic prophase during vegetative growth","type":"exact"},{"name":"normal duration of prophase during mitotic cell cycle","type":"exact"},{"name":"normal duration of prophase of mitosis","type":"exact"}],"termid":"FYPO:0006257"}


id: MONDO:0010822
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Warburg micro syndrome in which the cause of the disease is a mutation in the RAB3GAP1 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Warburg micro syndrome","termid":"MONDO:0016649"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0002320","MONDO:0005328","MONDO:0006025"],"is_obsolete":false,"name":"Warburg micro syndrome 1","secondary_identifiers":["OMIM:600118","DOID:0110716","MEDGEN:333142","UMLS:C1838625"],"synonyms":[{"name":"RAB3GAP1 Warburg micro syndrome","type":"exact"},{"name":"WARBM1","type":"exact"},{"name":"WARBURG micro syndrome 1","type":"related"},{"name":"Warburg micro syndrome 1","type":"exact"},{"name":"Warburg micro syndrome caused by mutation in RAB3GAP1","type":"exact"},{"name":"Warburg micro syndrome type 1","type":"exact"},{"name":"micro syndrome","type":"related"},{"name":"micro syndrome 1","type":"exact"}],"termid":"MONDO:0010822","xrefs":{"Monarch":{"xref_id":"0010822"}}}


id: FYPO:0004471
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a protein that is not normally found in the nucleolus is observed there during telophase of mitosis.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein mislocalized to nucleus during vegetative growth","termid":"FYPO:0000784"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0000138","FYPO:0001985"],"is_obsolete":false,"name":"protein mislocalized to nucleolus during mitotic telophase","synonyms":[{"name":"ectopic protein localization to nucleolus during mitotic telophase","type":"exact"},{"name":"protein mislocalised to nucleolus during mitotic telophase","type":"exact"},{"name":"protein mislocalised to nucleolus during telophase during vegetative growth","type":"exact"},{"name":"protein mislocalized to nucleolus during mitotic telophase during vegetative growth","type":"exact"},{"name":"protein mislocalized to nucleolus during telophase of mitosis","type":"exact"}],"termid":"FYPO:0004471"}


id: GO:0047813
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-arabinitol + NAD+ = D-xylulose + NADH.","definition_xrefs":["EC:1.1.1.11","MetaCyc:D-ARABINITOL-4-DEHYDROGENASE-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"D-arabinitol 4-dehydrogenase activity","secondary_identifiers":["RHEA:17921"],"termid":"GO:0047813"}


id: GO:0070088
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An inclusion body located in the cytoplasm of prokaryotes that consists of polyhydroxyalkanoate (PHA) molecules and associated proteins, surrounded by a phospholipid monolayer; the proteins include PHA synthase, PHA depolymerase and 3HB-oligomer hydroxylase, phasins (PhaPs), which are thought to be the major structural proteins of the membrane surrounding the inclusion, and the regulator of phasin expression PhaR.","definition_xrefs":["PMID:15762612","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inclusion body","termid":"GO:0016234"},{"relation_name":"is_a","term_name":"intracellular membrane-bounded organelle","termid":"GO:0043231"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"polyhydroxyalkanoate granule","synonyms":[{"name":"PHA granule","type":"exact"},{"name":"PHB granule","type":"narrow"},{"name":"carbonosome","type":"broad"}],"termid":"GO:0070088"}


id: PBO:0084595
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Merged open reading frame; does not encode a discrete protein; YJL017W was originally annotated as an independent ORF, but as a result of a sequence change, it was merged with an adjacent ORF into a single reading frame, designated YJL016W","termid":"PBO:0084595"}


id: PBO:0065701
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"purine rich element binding protein G","termid":"PBO:0065701"}


id: MONDO:0024534
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Dowling-Degos disease in which the cause of the disease is a mutation in the KRT5 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Dowling-Degos disease","termid":"MONDO:0008371"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0024322"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0024322","MONDO:0005066","MONDO:0005093"],"is_obsolete":false,"name":"Dowling-Degos disease 1","secondary_identifiers":["UMLS:C4552092","MEDGEN:1645697","OMIM:179850"],"synonyms":[{"name":"DDD","type":"related"},{"name":"DDD1","type":"related"},{"name":"Dowling-Degos disease 1","type":"exact"},{"name":"Dowling-Degos disease caused by mutation in KRT5","type":"exact"},{"name":"KRT5 Dowling-Degos disease","type":"exact"},{"name":"reticular pigment anomaly of flexures","type":"related"}],"termid":"MONDO:0024534","xrefs":{"Monarch":{"xref_id":"0024534"}}}


id: GO:0046620
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of growth of an organ of an organism.","definition_xrefs":["GOC:bf","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of developmental growth","termid":"GO:0048638"},{"relation_name":"is_a","term_name":"regulation of multicellular organismal process","termid":"GO:0051239"},{"relation_name":"regulates","term_name":"organ growth","termid":"GO:0035265"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of organ growth","termid":"GO:0046620"}


id: PBO:0110417
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SYNCRIP pseudogene 1","termid":"PBO:0110417"}


id: PBO:0077808
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tumor protein p53","termid":"PBO:0077808"}


id: MONDO:0000262
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Fungus infection of the external ear, usually by aspergillus species","definition_xrefs":["MESH:D059249"],"direct_ancestors":[{"relation_name":"is_a","term_name":"otitis externa","termid":"MONDO:0004795"},{"relation_name":"is_a","term_name":"tinea infection","termid":"MONDO:0005982"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"otomycosis","secondary_identifiers":["DOID:0050147","SCTID:53316003","MEDGEN:452110","UMLS:C0029895","icd11.foundation:107388709","ICD9:111.8"],"synonyms":[{"name":"Singapore ear","type":"related"},{"name":"external ear fungal infectious disease","type":"exact"},{"name":"otitis mycotic externa","type":"related"}],"termid":"MONDO:0000262","xrefs":{"Monarch":{"xref_id":"0000262"}}}


id: GO:0075174
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the symbiont organism modulates the frequency, rate or extent of its cAMP-mediated signal transduction as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of cAMP-mediated signaling in response to host (obsolete GO:0075174)","synonyms":[{"name":"regulation of cAMP-mediated signal transduction in response to host","type":"exact"},{"name":"regulation of cAMP-mediated signalling in response to host","type":"exact"},{"name":"regulation of symbiont cAMP-mediated signal transduction in response to host","type":"exact"}],"termid":"GO:0075174"}


id: GO:1905261
data:
  {"annotated_genes":["SJAG_03720","SJAG_03048","SJAG_00100"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104275,110300],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905263"},{"annotations":[118217],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0062209"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of meiotic DNA double-strand break formation involved in reciprocal meiotic recombination.","definition_xrefs":["GOC:TermGenie","PMID:26653857","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of meiotic DNA double-strand break formation","termid":"GO:1903341"},{"relation_name":"part_of","term_name":"reciprocal meiotic recombination","termid":"GO:0007131"},{"relation_name":"regulates","term_name":"meiotic DNA double-strand break formation involved in reciprocal meiotic recombination","termid":"GO:0010780"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00100":null,"SJAG_03048":null,"SJAG_03720":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0140013"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0006310"}],"interesting_parent_ids":["GO:0008150","GO:0006310","GO:0007049","GO:0140013","GO:0006259"],"is_obsolete":false,"name":"regulation of meiotic DNA double-strand break formation involved in reciprocal meiotic recombination","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1905261","terms_by_termid":{"GO:0062209":null,"GO:1905263":null}}


id: PBO:0038563
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin binding transcription modulator","termid":"PBO:0038563"}


id: PBO:0040493
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ataxin 10","termid":"PBO:0040493"}


id: GO:0035199
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The specific avoidance actions or reactions of an organism in response to the perception of salt.","definition_xrefs":["GOC:bf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"feeding behavior","termid":"GO:0007631"},{"relation_name":"part_of","term_name":"response to chemical","termid":"GO:0042221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"salt aversion","synonyms":[{"name":"behavioral response to salt","type":"broad"}],"termid":"GO:0035199"}


id: GO:0052896
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: H2O + O2 + spermidine = 1,3-diaminopropane + 4-aminobutanal + H2O2.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete spermidine oxidase (propane-1,3-diamine-forming) activity (obsolete GO:0052896)","termid":"GO:0052896"}


id: PBO:0080489
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"von Willebrand factor A domain containing 8","termid":"PBO:0080489"}


id: MONDO:0017092
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Unilateral polymicrogyria is a cerebral cortical malformation characterized by unilateral excessive cortical folding and abnormal cortical layering. It comprises two sub-types depending on the areas affected: unilateral hemispheric and focal polymicrogyria.","definition_xrefs":["Orphanet:268943"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polymicrogyria","termid":"MONDO:0000087"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"unilateral polymicrogyria","secondary_identifiers":["SCTID:715905006","UMLS:C4024960","MEDGEN:870513","GARD:20980","icd11.foundation:782302128"],"termid":"MONDO:0017092","xrefs":{"Monarch":{"xref_id":"0017092"}}}


id: SO:0002247
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A non-coding RNA less than 200 nucleotides in length.","definition_xrefs":["PMID:30069443"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ncRNA","termid":"SO:0000655"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sncRNA","synonyms":[{"name":"Small noncoding RNA","type":"exact"}],"termid":"SO:0002247"}


id: PBO:0009180
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sir antagonist","termid":"PBO:0009180"}


id: PATO:0001795
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A coiling which is relatively high.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"coiled","termid":"PATO:0000404"},{"relation_name":"is_a","term_name":"increased object quality","termid":"PATO:0002305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased coiling","synonyms":[{"name":"high coiling","type":"exact"}],"termid":"PATO:0001795"}


id: PBO:0113548
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD-repeat protein involved in Ub-mediated proteolysis; K48-, K29-specific Ub chain binding protein involved in Ub homeostasis; substrate-recruiting adaptor for Cdc48p in mitochondria-associated degradation; inhibits degradation of Ufd2p-dependent substrates; facilitates proteolysis of Cse4p, a centromeric H3-like protein; required for ribophagy; promotes NHEJ in postdiauxic/stationary phase; protein increases in abundance and relocalizes from nucleus to nuclear periphery upon replication stress","termid":"PBO:0113548"}


id: PBO:0005170
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome b5 reductase (predicted)","termid":"PBO:0005170"}


id: GO:0007403
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cell fate determination process in which a cell becomes capable of differentiating autonomously into a glial cell regardless of its environment; upon determination, the cell fate cannot be reversed.","definition_xrefs":["GOC:mtg_sensu","GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell fate determination","termid":"GO:0001709"},{"relation_name":"part_of","term_name":"glial cell fate commitment","termid":"GO:0021781"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"glial cell fate determination","secondary_identifiers":["GO:0043361"],"termid":"GO:0007403"}


id: PBO:0064810
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PPP1R2C family member C","termid":"PBO:0064810"}


id: PBO:0065905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rabaptin, RAB GTPase binding effector protein 1","termid":"PBO:0065905"}


id: PBO:0005713
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA (guanine-N7-)-methyltransferase subunit Trm82 (predicted)","termid":"PBO:0005713"}


id: GO:0034492
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The volume enclosed by the hydrogenosome membrane.","definition_xrefs":["GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular organelle lumen","termid":"GO:0070013"},{"relation_name":"part_of","term_name":"hydrogenosome","termid":"GO:0042566"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"hydrogenosome lumen","termid":"GO:0034492"}


id: GO:0034031
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a ribonucleoside bisphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with one phosphate group attached to each of two different hydroxyl groups on the sugar.","definition_xrefs":["GOC:pde","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside bisphosphate catabolic process","termid":"GO:0033869"},{"relation_name":"is_a","term_name":"ribonucleoside bisphosphate metabolic process","termid":"GO:0033875"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0055086","GO:0044281"],"is_obsolete":false,"name":"ribonucleoside bisphosphate catabolic process","synonyms":[{"name":"ribonucleoside bisphosphate breakdown","type":"exact"},{"name":"ribonucleoside bisphosphate catabolism","type":"exact"},{"name":"ribonucleoside bisphosphate degradation","type":"exact"}],"termid":"GO:0034031"}


id: PBO:0066898
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 198","termid":"PBO:0066898"}


id: PBO:0038336
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-occurs_across","termid":"PBO:0038336"}


id: PBO:0004825
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"elongin C (predicted)","termid":"PBO:0004825"}


id: PBO:0063497
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PDZ and LIM domain 5","termid":"PBO:0063497"}


id: PBO:0004700
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MCM complex subunit Mcm6","termid":"PBO:0004700"}


id: GO:0070941
data:
  {"annotated_genes":["SJAG_02338","SJAG_04227","SJAG_02707","SJAG_02626"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[71534,73093,105777,119837],"is_not":false,"summary":null,"term":"GO:0070941"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form an eisosome, a cell part that is composed of the eisosome membrane and eisosome filaments. The eisosome membrane, also called the MCC domain, is a furrow-like plasma membrane sub-domain with associated integral transmembrane proteins. The eisosome filaments form a scaffolding lattice on the cytoplasmic face of the membrane.","definition_xrefs":["GOC:mah","GOC:jp","GOC:al","PMID:19564405"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component assembly","termid":"GO:0022607"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02338":null,"SJAG_02626":null,"SJAG_02707":null,"SJAG_04227":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"eisosome assembly","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0070941","terms_by_termid":{"GO:0070941":null}}


id: GO:0003910
data:
  {"annotated_genes":["SJAG_02527","SJAG_00198"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[73909,82010],"is_not":false,"summary":null,"term":"GO:0003910"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + deoxyribonucleotide(n) + deoxyribonucleotide(m) = AMP + diphosphate + deoxyribonucleotide(n+m).","definition_xrefs":["EC:6.5.1.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA ligase activity","termid":"GO:0003909"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00198":null,"SJAG_02527":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0003674","GO:0016874","GO:0140097","GO:0003824"],"is_obsolete":false,"name":"DNA ligase (ATP) activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:DNA-LIGASE-ATP-RXN"],"synonyms":[{"name":"DNA joinase activity","type":"broad"},{"name":"DNA repair enzyme activity","type":"related"},{"name":"DNA-joining enzyme","type":"related"},{"name":"deoxyribonucleate ligase","type":"broad"},{"name":"deoxyribonucleic acid joinase","type":"broad"},{"name":"deoxyribonucleic acid ligase","type":"broad"},{"name":"deoxyribonucleic acid repair enzyme","type":"related"},{"name":"deoxyribonucleic acid-joining enzyme","type":"related"},{"name":"deoxyribonucleic joinase","type":"broad"},{"name":"deoxyribonucleic ligase","type":"broad"},{"name":"deoxyribonucleic repair enzyme","type":"related"},{"name":"deoxyribonucleic-joining enzyme","type":"related"},{"name":"poly(deoxyribonucleotide):poly(deoxyribonucleotide) ligase (AMP-forming)","type":"related"},{"name":"polydeoxyribonucleotide synthase (ATP) activity","type":"related"},{"name":"polynucleotide ligase","type":"broad"},{"name":"polynucleotide ligase (ATP) activity","type":"related"},{"name":"sealase activity","type":"related"}],"termid":"GO:0003910","terms_by_termid":{"GO:0003910":null}}


id: GO:0008631
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals in which an intracellular signal is conveyed to trigger the apoptotic death of a cell. The pathway is induced in response to oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, and ends when the execution phase of apoptosis is triggered.","definition_xrefs":["GOC:mtg_apoptosis","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intrinsic apoptotic signaling pathway","termid":"GO:0097193"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"intrinsic apoptotic signaling pathway in response to oxidative stress","synonyms":[{"name":"induction of apoptosis by oxidative stress","type":"related"},{"name":"oxidative stress-induced intrinsic apoptotic signaling pathway","type":"exact"}],"termid":"GO:0008631"}


id: GO:0002691
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of cellular extravasation.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of leukocyte migration","termid":"GO:0002685"},{"relation_name":"regulates","term_name":"cellular extravasation","termid":"GO:0045123"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cellular extravasation","termid":"GO:0002691"}


id: MONDO:0000207
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete hypotonia, infantile, with psychomotor retardation and characteristic facies (obsolete MONDO:0000207)","termid":"MONDO:0000207","xrefs":{"Monarch":{"xref_id":"0000207"}}}


id: FYPO:0007115
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the medial cortical nodes is abolished, and the protein is present in the cytoplasm instead, during interphase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization to medial cortical node, with protein mislocalized to cytoplasm","termid":"FYPO:0004735"},{"relation_name":"is_a","term_name":"abolished protein localization to medial cortical node during mitotic interphase","termid":"FYPO:0007139"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000138","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abolished protein localization to medial cortical node, with protein mislocalized to cytoplasm during mitotic interphase","synonyms":[{"name":"abolished protein localisation to medial cortical node, with protein mislocalised to cytoplasm during mitotic interphase","type":"exact"},{"name":"abolished protein localization to cortical medial dot, with protein mislocalized to cytoplasm during mitotic interphase","type":"exact"},{"name":"abolished protein localization to cytokinetic nodes, with protein mislocalized to cytoplasm during mitotic interphase","type":"related"},{"name":"abolished protein localization to medial cortical node, with protein mislocalized to cytoplasm, during interphase during vegetative growth","type":"exact"},{"name":"abolished protein localization to medial cortical node, with protein mislocalized to cytoplasm, during interphase of mitotic cell cycle","type":"exact"},{"name":"abolished protein localization to medial cortical nodes, with protein mislocalized to cytoplasm during mitotic interphase","type":"exact"},{"name":"abolished protein recruitment to medial cortical node, with protein mislocalized to cytoplasm during mitotic interphase","type":"related"},{"name":"protein localization to medial cortical node abolished, with protein mislocalized to cytoplasm during mitotic interphase","type":"exact"}],"termid":"FYPO:0007115"}


id: PBO:0000893
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TATA-binding protein (predicted)","termid":"PBO:0000893"}


id: GO:0016597
data:
  {"annotated_genes":["SJAG_00635","SJAG_00964","SJAG_03861"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[59748,68907],"is_not":false,"summary":null,"term":"GO:0016597"},{"annotations":[75928],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016594"}]},"cv_name":"molecular_function","definition":"Binding to an amino acid, organic acids containing one or more amino substituents.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"binding","termid":"GO:0005488"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00635":null,"SJAG_00964":null,"SJAG_03861":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"amino acid binding","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null},"termid":"GO:0016597","terms_by_termid":{"GO:0016594":null,"GO:0016597":null}}


id: FYPO:0001755
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"Auxotrophy in which a cell is unable to synthesize lysine or cysteine, and therefore requires lysine and cysteine in the medium for vegetative cell growth.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"growth auxotrophic for cysteine","termid":"FYPO:0000037"},{"relation_name":"is_a","term_name":"growth auxotrophic for lysine","termid":"FYPO:0000039"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"growth auxotrophic for lysine and cysteine","synonyms":[{"name":"growth auxotrophic for lysine and cysteine during mitotic cell cycle","type":"related"},{"name":"growth auxotrophic for lysine and cysteine during vegetative growth","type":"exact"},{"name":"lysine and cysteine auxotrophy","type":"exact"}],"termid":"FYPO:0001755"}


id: PBO:0062119
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily C member 46","termid":"PBO:0062119"}


id: PBO:0066436
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ret proto-oncogene","termid":"PBO:0066436"}


id: PBO:0091381
data:
  {"annotation_feature_type":"gene","cv_name":"cat_act","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"2.6 umol/min/mg","termid":"PBO:0091381"}


id: MONDO:0016957
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Chromosome 6q duplication is a chromosome abnormality that occurs when there is an extra copy of genetic material on the long arm (q) of chromosome 6. The severity of the condition and the signs and symptoms depend on the size and location of the duplication and which genes are involved. Features that often occur in people with chromosome 6q duplication include developmental delay, intellectual disability, behavioral problems and distinctive facial features. In most cases, chromosome 6q duplication occurs de novo or is inherited from a parent with a chromosomal rearrangement such as a balanced translocation. Rarely, it is inherited from a parent with the same duplication. Treatment is based on the signs and symptoms present in each person.","definition_xrefs":["GARD:0005353"],"direct_ancestors":[{"relation_name":"is_a","term_name":"partial duplication of chromosome 6","termid":"MONDO:0016927"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"partial duplication of the long arm of chromosome 6","secondary_identifiers":["UMLS:C5679708","Orphanet:262878","icd11.foundation:149091243","MESH:C537812","GARD:5353","MEDGEN:1826037"],"synonyms":[{"name":"6q duplication","type":"related"},{"name":"6q trisomy","type":"related"},{"name":"Duplication 6q","type":"related"},{"name":"chromosome 6q duplication","type":"related"},{"name":"partial duplication of chromosome 6q","type":"exact"},{"name":"partial duplication of the long arm of chromosome type 6","type":"exact"},{"name":"partial trisomy 6q","type":"related"},{"name":"partial trisomy of chromosome 6q","type":"exact"},{"name":"partial trisomy of the long arm of chromosome 6","type":"exact"},{"name":"trisomy 6q","type":"related"}],"termid":"MONDO:0016957","xrefs":{"Monarch":{"xref_id":"0016957"}}}


id: MONDO:0005275
data:
  {"annotated_genes":["SJAG_03855","SJAG_02206","SJAG_02805","SJAG_00169","SJAG_03689","SJAG_01836","SJAG_01159","SJAG_03125","SJAG_03453","SJAG_04114","SJAG_03626","SJAG_00570","SJAG_00229","SJAG_05979","SJAG_02194","SJAG_00566"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87293],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010926"},{"annotations":[86882],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0800029"},{"annotations":[88618,88619,89150],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008903"},{"annotations":[88016],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011871"},{"annotations":[88164],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011014"},{"annotations":[88377],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0957261"},{"annotations":[88376],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0957263"},{"annotations":[88145],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0957294"},{"annotations":[87976],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013878"},{"annotations":[87107],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014612"},{"annotations":[88939],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030690"},{"annotations":[88883],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009329"},{"annotations":[88862],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0100215"},{"annotations":[87678],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0100220"},{"annotations":[87654],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014206"}]},"cv_name":"mondo","definition":"A disease involving the lung.","direct_ancestors":[{"relation_name":"is_a","term_name":"lower respiratory tract disorder","termid":"MONDO:0000270"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00169":null,"SJAG_00229":null,"SJAG_00566":null,"SJAG_00570":null,"SJAG_01159":null,"SJAG_01836":null,"SJAG_02194":null,"SJAG_02206":null,"SJAG_02805":null,"SJAG_03125":null,"SJAG_03453":null,"SJAG_03626":null,"SJAG_03689":null,"SJAG_03855":null,"SJAG_04114":null,"SJAG_05979":null},"genotype_count":0,"is_obsolete":false,"name":"lung disorder","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:7399","EFO:0003818","MESH:D008171","UMLS:C0024115","NCIT:C3198","ICD9:518.89","SCTID:19829001","DOID:850"],"synonyms":[{"name":"disease of lung","type":"exact"},{"name":"disease or disorder of lung","type":"exact"},{"name":"disorder of lung","type":"exact"},{"name":"lung disease","type":"exact"},{"name":"lung disease or disorder","type":"exact"},{"name":"lung disorder","type":"exact"},{"name":"lung disorders","type":"exact"},{"name":"pulmonary disease","type":"exact"},{"name":"pulmonary diseases","type":"exact"},{"name":"pulmonary disorder","type":"exact"},{"name":"pulmonary disorders","type":"exact"}],"termid":"MONDO:0005275","terms_by_termid":{"MONDO:0008903":null,"MONDO:0009329":null,"MONDO:0010926":null,"MONDO:0011014":null,"MONDO:0011871":null,"MONDO:0013878":null,"MONDO:0014206":null,"MONDO:0014612":null,"MONDO:0030690":null,"MONDO:0100215":null,"MONDO:0100220":null,"MONDO:0800029":null,"MONDO:0957261":null,"MONDO:0957263":null,"MONDO:0957294":null},"xrefs":{"Monarch":{"xref_id":"0005275"}}}


id: GO:0010144
data:
  {"annotated_genes":["SJAG_00707"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[113787],"is_not":false,"summary":null,"term":"GO:0010144"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of pyridoxal phosphate, the active form of vitamin B6, from pyridoxamine.","definition_xrefs":["GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyridoxal 5'-phosphate salvage","termid":"GO:0009443"},{"relation_name":"is_a","term_name":"pyridoxamine metabolic process","termid":"GO:0042818"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00707":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006766"}],"interesting_parent_ids":["GO:0006766","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"pyridoxal phosphate biosynthetic process from pyridoxamine","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"pyridoxal 5'-phosphate salvage from pyridoxamine","type":"exact"},{"name":"pyridoxal phosphate anabolism from pyridoxamine","type":"exact"},{"name":"pyridoxal phosphate formation from pyridoxamine","type":"exact"},{"name":"pyridoxal phosphate synthesis from pyridoxamine","type":"exact"},{"name":"vitamin B6 biosynthesis from pyridoxamine","type":"exact"},{"name":"vitamin B6 biosynthetic process from pyridoxamine","type":"exact"}],"termid":"GO:0010144","terms_by_termid":{"GO:0010144":null}}


id: GO:0061833
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within a tricellular tight junction.","definition_xrefs":["PMID:24889144"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to cell-cell junction","termid":"GO:0150105"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"protein localization to tricellular tight junction","termid":"GO:0061833"}


id: PBO:0040696
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"branched chain keto acid dehydrogenase E1 subunit beta","termid":"PBO:0040696"}


id: PBO:0011478
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"methylglyoxyl reductase (NADPH-dependent) (predicted)","termid":"PBO:0011478"}


id: GO:0102340
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: (R)-3-hydroxybehenoyl-CoA(4-) + NADP(3-) = 3-oxodocosanoyl-CoA + NADPH + H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 3-oxo-behenoyl-CoA reductase activity (obsolete GO:0102340)","termid":"GO:0102340"}


id: MONDO:0014707
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"14q32 duplication syndrome is a rare chromosomal anomaly syndrome resulting from the partial duplication of the long arm of chromosome 14 that results in a predisposition to a number of adult-onset myeloproliferative neoplasms, including acute myeloid leukemia, chronic myelomonocytic leukemia, and myeloproliferative neoplasms, especially essential thrombocythemia. Progression to myelofibrosis and secondary acute myeloid leukemia can be observed.","definition_xrefs":["Orphanet:488280"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"myeloproliferative neoplasm","termid":"MONDO:0020076"},{"relation_name":"is_a","term_name":"partial duplication of the long arm of chromosome 14","termid":"MONDO:0016964"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"14q32 duplication syndrome","secondary_identifiers":["GARD:17890","MEDGEN:896239","OMIM:616604","UMLS:C4225449"],"synonyms":[{"name":"chromosome 14q32 DUPLICATION syndrome, 700-KB","type":"related"},{"name":"dup(14)q(32)","type":"exact"},{"name":"myeloproliferative neoplasms, familial, susceptibility to","type":"related"},{"name":"predisposition to adult-onset myeloproliferative neoplasm due to 14q32 duplication","type":"exact"},{"name":"trisomy 14q32","type":"exact"}],"termid":"MONDO:0014707","xrefs":{"Monarch":{"xref_id":"0014707"}}}


id: GO:0047154
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: pyruvate + D-methylmalonyl-CoA = oxaloacetic acid + propionyl-CoA.","definition_xrefs":["EC:2.1.3.1","MetaCyc:2.1.3.1-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxyl- or carbamoyltransferase activity","termid":"GO:0016743"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0016741","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"methylmalonyl-CoA carboxytransferase activity","secondary_identifiers":["RHEA:20764","UM-BBD_reactionID:r0923"],"synonyms":[{"name":"(S)-2-methyl-3-oxopropanoyl-CoA:pyruvate","type":"related"},{"name":"(S)-2-methyl-3-oxopropanoyl-CoA:pyruvate carboxyltransferase activity","type":"related"},{"name":"(S)-methylmalonyl-CoA:pyruvate carboxyltransferase activity","type":"related"},{"name":"(S)-methylmalonyl-CoA:pyruvate carboxytransferase activity","type":"related"},{"name":"methylmalonyl coenzyme A carboxyltransferase activity","type":"related"},{"name":"methylmalonyl-CoA carboxyltransferase activity","type":"exact"},{"name":"methylmalonyl-CoA transcarboxylase activity","type":"related"},{"name":"oxalacetic transcarboxylase activity","type":"related"},{"name":"transcarboxylase activity","type":"related"}],"termid":"GO:0047154"}


id: GO:0102320
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 1,8-cineole + NADPH + H+ + O2 = 2-exo-hydroxy-1,8-cineole + NADP + H2O.","definition_xrefs":["RHEA:32895","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"1,8-cineole 2-exo-monooxygenase activity","secondary_identifiers":["MetaCyc:RXN-4342","EC:1.14.14.56"],"termid":"GO:0102320"}


id: MONDO:0018642
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A immunodeficiency disorder caused by loss of function mutation in NIK (MAP3K14).","definition_xrefs":["doi:10.1038/ncomms6360"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-SCID combined immunodeficiency","termid":"MONDO:0018814"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"NIK deficiency","secondary_identifiers":["GARD:21864","MEDGEN:1808868","Orphanet:447731","UMLS:C5680065"],"synonyms":[{"name":"MAP3K14 non-severe combined immunodeficiency","type":"exact"},{"name":"non-severe combined immunodeficiency caused by mutation in MAP3K14","type":"exact"},{"name":"primary immunodeficiency with multifaceted aberrant lymphoid immunity","type":"exact"}],"termid":"MONDO:0018642","xrefs":{"Monarch":{"xref_id":"0018642"}}}


id: GO:0052438
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process by which an organism modulates the frequency, rate or extent of callose deposition by the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by organism of defense-related symbiont callose deposition (obsolete GO:0052438)","synonyms":[{"name":"modulation by organism of defense-related symbiont callose deposition","type":"exact"}],"termid":"GO:0052438"}


id: PBO:0058596
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6728","termid":"PBO:0058596"}


id: GO:0015351
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Enables the transfer of bilirubin from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Secondary active transporters include symporters and antiporters.","definition_xrefs":["GOC:mtg_transport"],"gene_count":0,"genotype_count":0,"name":"obsolete bilirubin secondary active transmembrane transporter activity (obsolete GO:0015351)","synonyms":[{"name":"bilirubin porter activity","type":"related"},{"name":"bilitranslocase","type":"narrow"}],"termid":"GO:0015351"}


id: PBO:0079838
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"unc-5 netrin receptor C","termid":"PBO:0079838"}


id: MONDO:0700250
data:
  {"annotated_genes":["SJAG_03046"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[89022],"is_not":false,"summary":null,"term":"MONDO:0700250"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial complex IV deficiency, nuclear-type","termid":"MONDO:0033885"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03046":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004069"}],"interesting_parent_ids":["MONDO:0004069","MONDO:0005066"],"is_obsolete":false,"name":"mitochondrial complex IV deficiency, nuclear type 1","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0070491","OMIM:220110","MEDGEN:1750917","UMLS:C5435656","GARD:15158"],"termid":"MONDO:0700250","terms_by_termid":{"MONDO:0700250":null},"xrefs":{"Monarch":{"xref_id":"0700250"}}}


id: FYPO:0005800
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the movement of one or more proteins within the plasma membrane is abnormal.","definition_xrefs":["PMID:25837586","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular process during vegetative growth","termid":"FYPO:0001362"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abnormal protein movement within plasma membrane during vegetative growth","synonyms":[{"name":"abnormal protein movement within plasma membrane during mitotic cell cycle","type":"related"}],"termid":"FYPO:0005800"}


id: FYPO:0003494
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to L-azetidine-2-carboxylic acid. Cells stop growing (and may die) at a concentration of L-azetidine-2-carboxylic acid that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0002683","FYPO:0005447","FYPO:0001985","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to L-azetidine-2-carboxylic acid","synonyms":[{"name":"hypersensitive to L-azetidine-2-carboxylic acid","type":"exact"},{"name":"sensitive to (S)-azetidine-2-carboxylic acid","type":"exact"},{"name":"sensitive to AZC","type":"broad"},{"name":"sensitive to L-azetidine-2-carboxylic acid during mitotic cell cycle","type":"related"},{"name":"sensitive to L-azetidine-2-carboxylic acid during vegetative growth","type":"exact"}],"termid":"FYPO:0003494"}


id: PBO:0081291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 74","termid":"PBO:0081291"}


id: GO:0033660
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont inhibits or disrupts the normal execution of the resistance gene-dependent defense response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated suppression of host defenses","termid":"GO:0044414"},{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host resistance gene-dependent defense response","termid":"GO:0052158"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated suppression of host resistance gene-dependent defense response","synonyms":[{"name":"down regulation by symbiont of defense response in host by specific elicitors","type":"exact"},{"name":"down-regulation by symbiont of host gene-for-gene resistance","type":"exact"},{"name":"downregulation by symbiont of pathogen-race/host plant cultivar-specific resistance in symbiont","type":"exact"},{"name":"inhibition by symbiont of host resistance gene-dependent defense response","type":"narrow"},{"name":"negative regulation by symbiont of host resistance gene-dependent defense response","type":"exact"},{"name":"suppression by symbiont of host resistance gene-dependent defense response","type":"exact"}],"termid":"GO:0033660"}


id: PBO:0040331
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase membrane subunit c locus 1 pseudogene 6","termid":"PBO:0040331"}


id: GO:0061693
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + methylphosphonate = alpha-D-ribose 1-methylphosphonate 5-triphosphate + adenine.","definition_xrefs":["PMID:22089136","GOC:dph","EC:2.7.8.37"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, for other substituted phosphate groups","termid":"GO:0016780"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016780"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016780","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity","secondary_identifiers":["MetaCyc:RXN0-6732","RHEA:34679"],"termid":"GO:0061693"}


id: SO:0001876
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A partial DNA sequence assembly of a chromosome or full genome, which contains gaps that are filled with N's.","definition_xrefs":["GMOD:ea"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sequence_assembly","termid":"SO:0000353"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"partial_genomic_sequence_assembly","synonyms":[{"name":"partial genomic sequence assembly","type":"exact"},{"name":"pseudomolecule","type":"broad"},{"name":"sequence assembly with N-gaps","type":"exact"}],"termid":"SO:0001876"}


id: PBO:0027292
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-binucleate_vegetative_cell_with_fragmented_septum","termid":"PBO:0027292"}


id: FYPO:0003396
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of ricinoleic acid than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002682"}],"interesting_parent_ids":["FYPO:0000139","FYPO:0001985","FYPO:0002682","FYPO:0005447","FYPO:0000003"],"is_obsolete":false,"name":"resistance to ricinoleic acid","synonyms":[{"name":"resistance to RA","type":"broad"},{"name":"resistance to ricinoleic acid during mitotic cell cycle","type":"related"},{"name":"resistance to ricinoleic acid during vegetative growth","type":"exact"},{"name":"resistant to ricinoleic acid","type":"exact"}],"termid":"FYPO:0003396"}


id: PBO:0064975
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PRAME family member 31, pseudogene","termid":"PBO:0064975"}


id: PBO:0089702
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Glycoside Hydrolase family protein Gls1","termid":"PBO:0089702"}


id: PBO:0081312
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 92 pseudogene 2","termid":"PBO:0081312"}


id: PBO:0047023
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 90 member A26","termid":"PBO:0047023"}


id: GO:0033741
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: AMP + glutathione disulfide + H+ + sulfite = 5'-adenylyl sulfate + 2 glutathione.","definition_xrefs":["RHEA:14141","EC:1.8.4.9"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor","termid":"GO:0016671"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"adenylyl-sulfate reductase (glutathione) activity","secondary_identifiers":["KEGG_REACTION:R05717","MetaCyc:1.8.4.9-RXN"],"synonyms":[{"name":"5'-adenylylsulfate reductase activity","type":"related"},{"name":"AMP,sulfite:glutathione-disulfide oxidoreductase (adenosine-5'-phosphosulfate-forming) activity","type":"related"},{"name":"AMP,sulfite:oxidized-glutathione oxidoreductase (adenosine-5'-phosphosulfate-forming) activity","type":"related"},{"name":"plant-type 5'-adenylylsulfate reductase activity","type":"narrow"}],"termid":"GO:0033741"}


id: GO:0004441
data:
  {"annotated_genes":["SJAG_01702"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[117529],"is_not":false,"summary":null,"term":"GO:0004441"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 1D-myo-inositol 1,4-bisphosphate + H2O = 1D-myo-inositol 4-phosphate + phosphate.","definition_xrefs":["EC:3.1.3.57","GOC:hb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inositol bisphosphate phosphatase activity","termid":"GO:0016312"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01702":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016787","GO:0016788","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"inositol-1,4-bisphosphate 1-phosphatase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:3.1.3.57-RXN","Reactome:R-HSA-1855208","RHEA:15553"],"synonyms":[{"name":"1D-myo-inositol-1,4-bisphosphate 1-phosphohydrolase activity","type":"related"},{"name":"inositol polyphosphate 1-phosphatase activity","type":"broad"},{"name":"inositol-polyphosphate 1-phosphatase activity","type":"related"}],"termid":"GO:0004441","terms_by_termid":{"GO:0004441":null}}


id: PBO:0084032
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi membrane protein with similarity to mammalian CASP; packaged into COPII vesicles for trafficking between ER and Golgi; genetic interactions with GOS1 (encoding a Golgi snare protein) suggest a role in Golgi function","termid":"PBO:0084032"}


id: PBO:0085614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in DNA replication; component of the Mcm2-7 hexameric helicase complex that binds chromatin as a part of the pre-replicative complex; forms a subcomplex with Mcm4p and Mcm7p","termid":"PBO:0085614"}


id: FYPO:0007570
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which septation initiation network signaling takes place at both mitotic spindle pole bodies. Normally, SIN signaling occurs only at the new SPB.","definition_xrefs":["PMID:15132994","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal septation initiation network signaling","termid":"FYPO:0007569"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000298"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0000298"],"is_obsolete":false,"name":"septation initiation network signaling from both mitotic spindle pole bodies","synonyms":[{"name":"SIN signaling from both mitotic SPBs","type":"exact"},{"name":"SIN signaling from both mitotic spindle pole bodies","type":"exact"},{"name":"abnormal septation initiation network signaling from both mitotic spindle pole bodies","type":"exact"},{"name":"septation initiation network signaling from both mitotic SPBs","type":"exact"},{"name":"septation initiation network signaling from both mitotic spindle pole bodies during mitotic cell cycle","type":"related"},{"name":"septation initiation network signaling from both mitotic spindle pole bodies during vegetative growth","type":"exact"},{"name":"septation initiation network signaling from old and new mitotic SPBs","type":"exact"},{"name":"septation initiation network signaling from old and new mitotic spindle pole bodies","type":"exact"},{"name":"septation initiation network signalling from both mitotic spindle pole bodies","type":"exact"},{"name":"septation initiation signaling from both mitotic spindle pole bodies","type":"exact"}],"termid":"FYPO:0007570"}


id: GO:1900382
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A regulation of transcription from RNA polymerase II promoter that results in regulation of thiamine biosynthetic process.","definition_xrefs":["GOC:TermGenie","GOC:mah","PMID:16874521"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of thiamine biosynthetic process by regulation of transcription from RNA polymerase II promoter (obsolete GO:1900382)","synonyms":[{"name":"regulation of thiamin biosynthetic process by regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of thiamine anabolism by regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of thiamine biosynthesis by regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of thiamine formation by regulation of transcription from RNA polymerase II promoter","type":"exact"},{"name":"regulation of thiamine synthesis by regulation of transcription from RNA polymerase II promoter","type":"exact"}],"termid":"GO:1900382"}


id: GO:0005517
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. This term was not defined before being made obsolete.","definition_xrefs":["GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete calmodulin inhibitor activity (obsolete GO:0005517)","synonyms":[{"name":"calmodulin inhibitor activity","type":"exact"}],"termid":"GO:0005517"}


id: GO:0071341
data:
  {"annotated_genes":["SJAG_00228","SJAG_03703","SJAG_03596","SJAG_00279","SJAG_04280","SJAG_05290","SJAG_03564","SJAG_01456","SJAG_01889","SJAG_00773","SJAG_00807","SJAG_01665","SJAG_04486","SJAG_01143","SJAG_02368","SJAG_02169","SJAG_04498","SJAG_03602"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[90083,90772,92543,94160,94425,95703,98184,99898,102585,103152,107096,108125,119019,119863],"is_not":false,"summary":null,"term":"GO:0071341"},{"annotations":[100872,105383,100296,117982],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0110115"}]},"cv_name":"cellular_component","definition":"A component of the cell division site that contains the mid1, cdr2, wee1, klp8, and blt1 proteins, and is involved in contractile ring localization. Medial cortical node complexes appear as cortical dots in the middle of the cell during interphase, and function to recruit other ring components in early mitosis.","definition_xrefs":["GOC:mah","PMID:19474789","PMID:19959363","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"medial cortex","termid":"GO:0031097"}],"gene_count":18,"genes_by_uniquename":{"SJAG_00228":null,"SJAG_00279":null,"SJAG_00773":null,"SJAG_00807":null,"SJAG_01143":null,"SJAG_01456":null,"SJAG_01665":null,"SJAG_01889":null,"SJAG_02169":null,"SJAG_02368":null,"SJAG_03564":null,"SJAG_03596":null,"SJAG_03602":null,"SJAG_03703":null,"SJAG_04280":null,"SJAG_04486":null,"SJAG_04498":null,"SJAG_05290":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005938"}],"interesting_parent_ids":["GO:0005938","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"medial cortical node","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"mid1p medial cortical dot","type":"exact"},{"name":"midsome","type":"exact"}],"termid":"GO:0071341","terms_by_termid":{"GO:0071341":null,"GO:0110115":null}}


id: PBO:0067928
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 230","termid":"PBO:0067928"}


id: PBO:0042486
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cadherin 11","termid":"PBO:0042486"}


id: PBO:0111940
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin Kip2 subfamily","termid":"PBO:0111940"}


id: PBO:0088084
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UBX domain-containing substrate adaptor for Cdc48p; ubiquitin regulatory X domain-containing protein that acts as a substrate recruiting cofactor for Cdc48p; positively regulates Glc7p PPase activity to promote growth and mitotic progression in complex with Cdc48p; ubiquitinated protein interactor involved in ER-associated degradation (ERAD); regulated by nuclear Ub-dependent degradation (INMAD pathway) independent of the Asi and Doa10 complexes; homolog of human p47 (NSFL1C)","termid":"PBO:0088084"}


id: SO:0000770
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The acceptor region of a two-piece tmRNA that when mature is charged at its 3' end with alanine. The tmRNA gene undergoes circular permutation in some groups of bacteria; processing of the transcripts from such a gene leaves the mature tmRNA in two pieces, base-paired together.","definition_xrefs":["doi:10.1093/nar/gkh795","Indiana:kw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tmRNA_region","termid":"SO:0000847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tmRNA_acceptor_piece","synonyms":[{"name":"tmRNA acceptor piece","type":"exact"}],"termid":"SO:0000770"}


id: PBO:0117179
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CTNNBIP1 antisense RNA 1","termid":"PBO:0117179"}


id: PBO:0085237
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Peptidyl-prolyl cis/trans-isomerase; activator of the phosphotyrosyl phosphatase activity of PP2A; involved in G1 phase progression, microtubule dynamics, bud morphogenesis and DNA repair; required for rapid reduction of Sgs1p levels in response to rapamycin; subunit of the Tap42p-Sit4p-Rrd1p complex; protein increases in abundance and relative distribution to the nucleus increases upon DNA replication stress","termid":"PBO:0085237"}


id: GO:0072116
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process pertaining to the initial formation of the pronephros. In mammals, the pronephros is the first of the three embryonic kidneys to be established and exists only transiently. In lower vertebrates such as fish and amphibia, the pronephros is the fully functional embryonic kidney and is indispensable for larval life.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"animal organ formation","termid":"GO:0048645"},{"relation_name":"is_a","term_name":"kidney rudiment formation","termid":"GO:0072003"},{"relation_name":"part_of","term_name":"pronephros morphogenesis","termid":"GO:0072114"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pronephros formation","synonyms":[{"name":"pronephric kidney formation","type":"exact"}],"termid":"GO:0072116"}


id: GO:0072172
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process pertaining to the initial formation of a mesonephric tubule from unspecified parts. A mesonephric tubule is an epithelial tube that is part of the mesonephros.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephron tubule formation","termid":"GO:0072079"},{"relation_name":"part_of","term_name":"mesonephric tubule morphogenesis","termid":"GO:0072171"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesonephric tubule formation","termid":"GO:0072172"}


id: PBO:0053493
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 471","termid":"PBO:0053493"}


id: GO:1902870
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of amacrine cell differentiation.","definition_xrefs":["GOC:mr","PMID:16872597","GOC:TermGenie","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of neuron differentiation","termid":"GO:0045665"},{"relation_name":"is_a","term_name":"regulation of amacrine cell differentiation","termid":"GO:1902869"},{"relation_name":"negatively_regulates","term_name":"amacrine cell differentiation","termid":"GO:0035881"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of amacrine cell differentiation","synonyms":[{"name":"down regulation of amacrine cell differentiation","type":"exact"},{"name":"down regulation of amacrine neuron differentiation","type":"exact"},{"name":"down-regulation of amacrine cell differentiation","type":"exact"},{"name":"down-regulation of amacrine neuron differentiation","type":"exact"},{"name":"downregulation of amacrine cell differentiation","type":"exact"},{"name":"downregulation of amacrine neuron differentiation","type":"exact"},{"name":"inhibition of amacrine cell differentiation","type":"narrow"},{"name":"inhibition of amacrine neuron differentiation","type":"narrow"},{"name":"negative regulation of amacrine neuron differentiation","type":"exact"}],"termid":"GO:1902870"}


id: FYPO:0006889
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of iron ion measured in a cell is lower than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased level of substance in cell during vegetative growth","termid":"FYPO:0001329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased cellular iron level","synonyms":[{"name":"decreased cellular iron ion level","type":"exact"},{"name":"decreased cellular iron level during mitotic cell cycle","type":"related"},{"name":"decreased cellular iron level during vegetative growth","type":"exact"},{"name":"decreased iron accumulation","type":"related"},{"name":"reduced cellular iron level","type":"exact"}],"termid":"FYPO:0006889"}


id: MOD:01392
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively crosslinks an L-cysteine residue and an L-asparagine residue, and C-4 methylates to form L-asparagine 5-methylthiazole-4-carboxylic acid.","definition_xrefs":["RESID:AA0469","PubMed:10625477","PubMed:1880060","PubMed:7844053"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"C-methylated residue","termid":"MOD:00656"},{"relation_name":"is_a","term_name":"thiazole/thiazoline ring crosslinked residues","termid":"MOD:01420"},{"relation_name":"is_a","term_name":"didehydrogenated residue","termid":"MOD:01888"},{"relation_name":"is_a","term_name":"crosslinked L-asparagine residue","termid":"MOD:02042"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"L-asparagine 5-methylthiazole-4-carboxylic acid","synonyms":[{"name":"2-[(1S)-1,3-bisazanyl-3-oxopropyl]-5-methyl-1,3-thiazole-4-carboxylic acid","type":"exact"},{"name":"2-[(1S)-1,3-diamino-3-oxopropyl]-5-methyl-1,3-thiazole-4-carboxylic acid","type":"exact"},{"name":"CROSSLNK 5-methylthiazole-4-carboxylic acid (Asn-Cys)","type":"exact"},{"name":"L-asparagine 5-methylthiazole-4-carboxylic acid","type":"exact"}],"termid":"MOD:01392"}


id: PBO:0049356
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"general transcription factor IIi pseudogene 14","termid":"PBO:0049356"}


id: GO:0035758
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to chemokine (C-C motif) ligand 21.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"C-C chemokine binding","termid":"GO:0019957"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"chemokine (C-C motif) ligand 21 binding","synonyms":[{"name":"CCL21 binding","type":"exact"}],"termid":"GO:0035758"}


id: GO:0036020
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding an endolysosome. An endolysosome is a transient hybrid organelle formed by fusion of a late endosome with a lysosome.","definition_xrefs":["GOC:pde"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lysosomal membrane","termid":"GO:0005765"},{"relation_name":"is_a","term_name":"endosome membrane","termid":"GO:0010008"},{"relation_name":"part_of","term_name":"endolysosome","termid":"GO:0036019"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005773"},{"rel_name":"part_of","termid":"GO:0005768"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0031410"}],"interesting_parent_ids":["GO:0005737","GO:0031410","GO:0005575","GO:0005773","GO:0005768"],"is_obsolete":false,"name":"endolysosome membrane","synonyms":[{"name":"endolysosomal membrane","type":"exact"}],"termid":"GO:0036020"}


id: FYPO:0000478
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the meiotic nuclear divisions are normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular component organization","termid":"FYPO:0006003"},{"relation_name":"is_a","term_name":"normal meiotic cell cycle process","termid":"FYPO:0007078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000257"],"is_obsolete":false,"name":"normal meiosis","synonyms":[{"name":"meiosis: normal","type":"related"},{"name":"normal meiotic nuclear division","type":"exact"}],"termid":"FYPO:0000478"}


id: PR:O13746
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC16E8.18 gene.","definition_xrefs":["UniProtKB:O13746","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C16E8.18 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC16E8.18","synonyms":[{"name":"Spom972h-SPAC16E8.18","type":"exact"}],"termid":"PR:O13746"}


id: GO:1904892
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of receptor signaling via STAT.","definition_xrefs":["GO_REF:0000058","PMID:24587195","GOC:TermGenie","GOC:rjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of signal transduction","termid":"GO:0009966"},{"relation_name":"regulates","term_name":"cell surface receptor signaling pathway via STAT","termid":"GO:0097696"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of receptor signaling pathway via STAT","synonyms":[{"name":"regulation of STAT signalling pathway","type":"exact"},{"name":"regulation of kinase activated-STAT cascade","type":"exact"},{"name":"regulation of kinase-STAT cascade","type":"exact"}],"termid":"GO:1904892"}


id: FYPO:0001473
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of tacrolimus than normal when the cells are subject to salt stress.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"resistance to tacrolimus","termid":"FYPO:0001379"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002682"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0002682","FYPO:0001985","FYPO:0005447","FYPO:0000139","FYPO:0000003"],"is_obsolete":false,"name":"resistance to tacrolimus during salt stress","synonyms":[{"name":"resistance to FK506 during salt stress","type":"exact"},{"name":"resistance to salt stress and tacrolimus","type":"exact"},{"name":"resistance to tacrolimus and salt stress","type":"exact"},{"name":"resistance to tacrolimus during salt stress during mitotic cell cycle","type":"related"},{"name":"resistance to tacrolimus during salt stress during vegetative growth","type":"exact"},{"name":"resistant to tacrolimus during salt stress","type":"exact"}],"termid":"FYPO:0001473"}


id: FYPO:0002450
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce a cell that is septated and has abnormal morphology (i.e. size, shape, or structure), and that undergoes two or more rounds of cell division and then dies.","definition_xrefs":["PomBase:al","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable after spore germination, multiple cell divisions, abnormal morphology","termid":"FYPO:0002148"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000005"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000005","FYPO:0001320","FYPO:0000004","FYPO:0001985"],"is_obsolete":false,"name":"inviable after spore germination, multiple cell divisions, septated cell with abnormal morphology","synonyms":[{"name":"inviable following spore germination, multiple cell divisions, septated cell with abnormal morphology","type":"exact"},{"name":"inviable germinated spore, multiple cell divisions, septated cell with abnormal morphology","type":"exact"},{"name":"lethal after spore germination, multiple cell divisions, septated cell with abnormal morphology","type":"exact"}],"termid":"FYPO:0002450"}


id: PBO:0050519
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homeobox D4","termid":"PBO:0050519"}


id: MONDO:0009012
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Malignant hyperthermia-arthrogryposis-torticollisis an extremely rare arthrogryposis syndrome, described in only two pairs of siblings from two unrelated families to date, and characterized by the association of arthrogryposis, congenital torticollis, dysmorphic facial features (i.e. asymmetry of the face, myopathic facial movements, ptosis, posteriorly rotated ears, cleft palate), progressive scoliosis and episodes of malignant hyperthermia. There have been no further descriptions in the literature since 1988.","definition_xrefs":["Orphanet:2215"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete syndrome or malformation associated with head and neck malformations (obsolete MONDO:0015501)","termid":"MONDO:0015501"},{"relation_name":"is_a","term_name":"congenital nervous system disorder","termid":"MONDO:0002320"},{"relation_name":"is_a","term_name":"arthrogryposis multiplex congenita","termid":"MONDO:0015168"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"multiple pterygium-malignant hyperthermia syndrome","secondary_identifiers":["GARD:3361","MESH:C565679","MEDGEN:347490","OMIM:217150","UMLS:C1857576"],"synonyms":[{"name":"contractures, congenital, torticollis, and malignant hyperthermia","type":"related"},{"name":"froster-Iskenius-Waterson syndrome","type":"related"},{"name":"froster-Iskenius-Waterson-Hall syndrome","type":"exact"},{"name":"malignant hyperthermia - arthrogryposis - torticollis","type":"related"},{"name":"malignant hyperthermia arthrogryposis torticollis","type":"related"},{"name":"malignant hyperthermia-arthrogryposis-torticollis syndrome","type":"exact"}],"termid":"MONDO:0009012","xrefs":{"Monarch":{"xref_id":"0009012"}}}


id: GO:0009824
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: AMP + dimethylallyl diphosphate = N(6)-(dimethylallyl)adenosine 5'-phosphate + diphosphate.","definition_xrefs":["RHEA:15285"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity, transferring alkyl or aryl (other than methyl) groups","termid":"GO:0016765"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016765"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016740","GO:0016765"],"is_obsolete":false,"name":"AMP dimethylallyltransferase activity","secondary_identifiers":["MetaCyc:RXN-4307","EC:2.5.1.27","KEGG_REACTION:R04038"],"synonyms":[{"name":"2-isopentenyl-diphosphate:AMP 2-isopentenyltransferase activity","type":"exact"},{"name":"2-isopentenyl-diphosphate:AMP delta2-isopentenyltransferase activity","type":"exact"},{"name":"adenylate dimethylallyltransferase (AMP-dependent) activity","type":"exact"},{"name":"adenylate dimethylallyltransferase activity","type":"related"},{"name":"adenylate isopentenyltransferase activity","type":"broad"},{"name":"cytokinin synthase activity","type":"broad"},{"name":"dimethylallyl-diphosphate:AMP dimethylallyltransferase activity","type":"related"},{"name":"isopentenyltransferase activity","type":"broad"}],"termid":"GO:0009824"}


id: GO:0030277
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Protection of epithelial surfaces of the gastrointestinal tract from proteolytic and caustic digestive agents.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial structure maintenance","termid":"GO:0010669"},{"relation_name":"is_a","term_name":"digestive system process","termid":"GO:0022600"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"maintenance of gastrointestinal epithelium","termid":"GO:0030277"}


id: PR:O74449
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC16C4.04 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O74449"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C16C4.04 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC16C4.04","synonyms":[{"name":"Spom972h-SPCC16C4.04","type":"exact"}],"termid":"PR:O74449"}


id: GO:0008607
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Modulation of the activity of the enzyme phosphorylase kinase.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein kinase regulator activity","termid":"GO:0019887"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0030234","GO:0098772","GO:0003674"],"is_obsolete":false,"name":"phosphorylase kinase regulator activity","synonyms":[{"name":"phosphorylase kinase, intrinsic regulator activity","type":"narrow"}],"termid":"GO:0008607"}


id: MONDO:0010209
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare autosomal recessive disorder of purine metabolism characterized by the isolated deficiency of xanthine dehydrogenase, causing hyperxanthinemia with low or absent uric acid and xanthinuria, leading to urolithiasis, hematuria, renal colic and urinary tract infections, while some patients are asymptomatic and others suffer from kidney failure. Less common manifestations include arthropathy, myopathy and duodenal ulcer.","definition_xrefs":["Orphanet:93601"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary xanthinuria","termid":"MONDO:0018106"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0019254"}],"interesting_parent_ids":["MONDO:0019254","MONDO:0005066"],"is_obsolete":false,"name":"xanthinuria type I","secondary_identifiers":["DOID:0070452","MEDGEN:82771","MESH:C562584","GARD:5621","OMIM:278300","SCTID:72682008","UMLS:C0268118"],"synonyms":[{"name":"XAN1","type":"exact"},{"name":"XDH deficiency","type":"broad"},{"name":"XO deficiency","type":"broad"},{"name":"XOR deficiency","type":"broad"},{"name":"hereditary xanthinuria, type I","type":"related"},{"name":"isolated xanthine oxidase deficiency","type":"exact"},{"name":"type 1 xanthinuria","type":"related"},{"name":"xanthine dehydrogenase deficiency","type":"broad"},{"name":"xanthine oxidase deficiency","type":"broad"},{"name":"xanthine oxidoreductase deficiency","type":"broad"},{"name":"xanthinuria type 1","type":"exact"},{"name":"xanthinuria type I","type":"exact"},{"name":"xanthinuria, type 1","type":"exact"},{"name":"xanthinuria, type I","type":"exact"}],"termid":"MONDO:0010209","xrefs":{"Monarch":{"xref_id":"0010209"}}}


id: GO:0001601
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with gut peptide YY to initiate a change in cell activity.","definition_xrefs":["PMID:9315606"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuropeptide Y receptor activity","termid":"GO:0004983"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"peptide YY receptor activity","termid":"GO:0001601"}


id: PBO:0003252
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-pipecolate oxidase","termid":"PBO:0003252"}


id: GO:1903269
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex which is capable of ornithine carbamoyltransferase inhibitor activity.","definition_xrefs":["GO_REF:0000088","GOC:TermGenie","PMID:12679340","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic complex","termid":"GO:1902494"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"ornithine carbamoyltransferase inhibitor complex","synonyms":[{"name":"OTC-ARGI complex","type":"narrow"},{"name":"ornithine carbamoyltransferase arginase complex","type":"narrow"}],"termid":"GO:1903269"}


id: PBO:0070199
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 124 pseudogene","termid":"PBO:0070199"}


id: PBO:0074534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small NF90 (ILF3) associated RNA G2","termid":"PBO:0074534"}


id: PATO:0002031
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A curvature quality inhering in a bearer by virtue of the bearer's being curved or tilted such that the tip points upwards.","definition_xrefs":["PATOC:cjm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"curved","termid":"PATO:0000406"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"upturned","termid":"PATO:0002031"}


id: PBO:0054238
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1620","termid":"PBO:0054238"}


id: PBO:0048622
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GINS complex subunit 3","termid":"PBO:0048622"}


id: PBO:0071917
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S3 pseudogene 2","termid":"PBO:0071917"}


id: GO:0033674
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of phosphorylation","termid":"GO:0042327"},{"relation_name":"is_a","term_name":"regulation of kinase activity","termid":"GO:0043549"},{"relation_name":"is_a","term_name":"positive regulation of transferase activity","termid":"GO:0051347"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of kinase activity","synonyms":[{"name":"kinase activator","type":"narrow"},{"name":"stimulation of kinase activity","type":"narrow"},{"name":"up regulation of kinase activity","type":"exact"},{"name":"up-regulation of kinase activity","type":"exact"},{"name":"upregulation of kinase activity","type":"exact"}],"termid":"GO:0033674"}


id: PBO:0079504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin pseudogene 2","termid":"PBO:0079504"}


id: PBO:0082944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytoplasmic heavy chain dynein; microtubule motor protein; member of the AAA+ protein family, required for anaphase spindle elongation; involved in spindle assembly, chromosome movement, and spindle orientation during cell division, targeted to microtubule tips by Pac1p; motility along microtubules inhibited by She1p","termid":"PBO:0082944"}


id: MONDO:0006793
data:
  {"annotated_genes":["SJAG_03429"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88544],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009050"}]},"cv_name":"mondo","definition":"Disease of the glandular, anterior portion of the pituitary (pituitary gland, anterior) resulting in hypersecretion of adenohypophyseal hormones such as growth hormone; prolactin; thyrotropin; luteinizing hormone; follicle stimulating hormone ; and adrenocorticotropic hormone. Hyperpituitarism usually is caused by a functional adenoma.","definition_xrefs":["MESH:D006964"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anterior pituitary gland disorder","termid":"MONDO:0024468"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03429":null},"genotype_count":0,"is_obsolete":false,"name":"hyperpituitarism","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C0020506","EFO:1000973","MEDGEN:43783","DOID:2444","ICD9:253.1","MedDRA:10020716","SCTID:10649000"],"termid":"MONDO:0006793","terms_by_termid":{"MONDO:0009050":null},"xrefs":{"Monarch":{"xref_id":"0006793"}}}


id: GO:0051117
data:
  {"annotated_genes":["SJAG_00516"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[75839],"is_not":false,"summary":null,"term":"GO:0051117"}]},"cv_name":"molecular_function","definition":"Binding to an ATPase, any enzyme that catalyzes the hydrolysis of ATP.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme binding","termid":"GO:0019899"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00516":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"ATPase binding","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0051117","terms_by_termid":{"GO:0051117":null}}


id: PBO:0031001
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_mercaptoethanol","termid":"PBO:0031001"}


id: PBO:0048715
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GLRX5 pseudogene 1","termid":"PBO:0048715"}


id: FYPO:0003415
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which histone H4 acetylation occurs to a greater extent than normal at the central core of centromeric regions.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased histone H4 acetylation during vegetative growth","termid":"FYPO:0002365"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985","FYPO:0002494","FYPO:0002274","FYPO:0001320"],"is_obsolete":false,"name":"increased histone H4 acetylation at centromere central core during vegetative growth","synonyms":[{"name":"increased histone H4 acetylation at centromere central core during mitotic cell cycle","type":"related"},{"name":"increased histone H4 acetylation at centromeric central core during vegetative growth","type":"exact"}],"termid":"FYPO:0003415"}


id: GO:0044157
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A prolongation or process extending from a host cell, e.g. a flagellum or axon.","definition_xrefs":["GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell part","termid":"GO:0033643"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host cell projection","termid":"GO:0044157"}


id: PBO:0087741
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the SWI/SNF chromatin remodeling complex; involved in transcriptional regulation; functions interdependently in transcriptional activation with Snf2p and Snf5p; relocates to the cytosol under hypoxic conditions","termid":"PBO:0087741"}


id: PBO:0055727
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LIM domain only 1","termid":"PBO:0055727"}


id: MONDO:0004919
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hydrocele","termid":"MONDO:0004920"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"infected hydrocele","secondary_identifiers":["MEDGEN:510235","ICD9:603.1","DOID:9911","SCTID:11666007","UMLS:C0156300","ICD10CM:N43.1","icd11.foundation:329423502"],"termid":"MONDO:0004919","xrefs":{"Monarch":{"xref_id":"0004919"}}}


id: MONDO:0018098
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autosomal dominant limb-girdle muscular dystrophy type 1E (LGMD1E) is a subtype of autosomal dominant limb-girdle muscular dystrophy characterized by an adult onset of progressive cardiac conduction defects that begin with cardiac dysrhythmia. Congestive heart failure and symptoms of progressive muscle weakness (present in a proximal distribution) tend to occur later. Affected patients may present only the cardiac features of the disease. Additional features include exertional dyspnea, calf hypertrophy, elevated creatine kinase serum levels and muscle cytoplasmic inclusions.","definition_xrefs":["Orphanet:34517"],"direct_ancestors":[{"relation_name":"is_a","term_name":"muscular dystrophy, limb-girdle, autosomal dominant","termid":"MONDO:0015151"},{"relation_name":"is_a","term_name":"qualitative or quantitative defects of desmin","termid":"MONDO:0016187"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0000426","MONDO:0005336"],"is_obsolete":false,"name":"autosomal dominant limb-girdle muscular dystrophy type 1E (DES)","secondary_identifiers":["UMLS:C4304301","MEDGEN:929970"],"synonyms":[{"name":"LGMD1E","type":"exact"},{"name":"limb-girdle muscular dystrophy type 1E","type":"related"}],"termid":"MONDO:0018098","xrefs":{"Monarch":{"xref_id":"0018098"}}}


id: PBO:0074805
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 13J","termid":"PBO:0074805"}


id: MONDO:0009767
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Oculocerebral hypopigmentation syndrome, Cross type is a rare congenital syndrome characterized by cutaneous and ocular hypopigmentation, various ocular anomalies (e.g. corneal and lens opacity, spastic ectropium, and/or nystagmus), growth deficiency, intellectual deficit and other progressive neurologic anomalies such as spastic tetraplegia, hyperreflexia, and/or athetoid movements. The clinical picture varies among patients and may also include other anomalies such as urinary tract abnormalities, Dandy-Walker malformations, and/or bilateral inguinal hernia.","definition_xrefs":["Orphanet:2719"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic oculocutaneous albinism","termid":"MONDO:0017305"},{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0005093"],"is_obsolete":false,"name":"oculocerebral hypopigmentation syndrome, Cross type","secondary_identifiers":["OMIM:257800","SCTID:17827007","ICD10CM:E70.3","GARD:105","ICD9:759.89","MEDGEN:423639","UMLS:C2936910"],"synonyms":[{"name":"Cross syndrome","type":"exact"},{"name":"Kramer syndrome","type":"related"},{"name":"Oculocerebral Syndrome with Hypopigmentation","type":"exact"},{"name":"hypopigmentation oculocerebral syndrome Cross type","type":"related"},{"name":"oculocerebral hypopigmentation syndrome","type":"related"},{"name":"oculocerebral syndrome with hypopigmentation","type":"related"}],"termid":"MONDO:0009767","xrefs":{"Monarch":{"xref_id":"0009767"}}}


id: MONDO:0015673
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Any of the forms of heart neoplasm that have a rare incidence.","definition_xrefs":["MONDO:patterns/rare"],"gene_count":0,"genotype_count":0,"name":"obsolete rare cardiac tumor (obsolete MONDO:0015673)","secondary_identifiers":["Orphanet:168194"],"synonyms":[{"name":"rare heart neoplasm","type":"exact"}],"termid":"MONDO:0015673","xrefs":{"Monarch":{"xref_id":"0015673"}}}


id: PBO:0083245
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; extensive overlap with PGA2/YNL149C, an uncharacterized gene with a proposed role in protein trafficking","termid":"PBO:0083245"}


id: SO:0001672
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A DNA sequence to which bacterial RNA polymerase sigma 54 binds, to begin transcription.","direct_ancestors":[{"relation_name":"is_a","term_name":"bacterial_RNApol_promoter","termid":"SO:0000613"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bacterial_RNApol_promoter_sigma54_element","synonyms":[{"name":"<new synonym>","type":"related"},{"name":"bacterial RNA polymerase promoter sigma54","type":"exact"}],"termid":"SO:0001672"}


id: PBO:0078332
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Glu (anticodon CTC) 1-4","termid":"PBO:0078332"}


id: PBO:0063696
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphoglycerate kinase 1","termid":"PBO:0063696"}


id: PBO:0046061
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EIF3J divergent transcript","termid":"PBO:0046061"}


id: PBO:0056404
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"membrane associated ring-CH-type finger 2","termid":"PBO:0056404"}


id: PBO:0063343
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PEST containing nuclear protein pseudogene 3","termid":"PBO:0063343"}


id: GO:0070701
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An extracellular region part that consists of a protective layer of mucus secreted by epithelial cells lining tubular organs of the body such as the colon or secreted into fluids such as saliva. Mucus is a viscous slimy secretion consisting of mucins (i.e. highly glycosylated mucin proteins) and various inorganic salts dissolved in water, with suspended epithelial cells and leukocytes.","definition_xrefs":["Wikipedia:Mucin","GOC:mah","GOC:mm2","GOC:krc","PMID:18806221","PMID:19432394"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"extracellular region","termid":"GO:0005576"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005576"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005576","GO:0005575"],"is_obsolete":false,"name":"mucus layer","synonyms":[{"name":"extracellular proteinaceous gel","type":"broad"},{"name":"mucous","type":"exact"},{"name":"mucous layer","type":"exact"},{"name":"mucus","type":"exact"}],"termid":"GO:0070701"}


id: PBO:0059541
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrially encoded tRNA-His (CAU/C)","termid":"PBO:0059541"}


id: MONDO:0001031
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Acute form of suppurative otitis media.","definition_xrefs":["MONDO:patterns/acute"],"direct_ancestors":[{"relation_name":"is_a","term_name":"suppurative otitis media","termid":"MONDO:0005975"},{"relation_name":"is_a","term_name":"acute disease","termid":"MONDO:0020683"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"purulent acute otitis media","secondary_identifiers":["DOID:10435","ICD9:382.02","SCTID:194281003","MEDGEN:543338","UMLS:C0271431"],"synonyms":[{"name":"acute suppurative otitis media","type":"exact"},{"name":"suppurative otitis media, acute","type":"exact"}],"termid":"MONDO:0001031","xrefs":{"Monarch":{"xref_id":"0001031"}}}


id: MONDO:0700251
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"orofacial cleft","termid":"MONDO:0000358"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"orofacial cleft 7","secondary_identifiers":["MEDGEN:371589","UMLS:C1833538","DOID:0080400"],"termid":"MONDO:0700251","xrefs":{"Monarch":{"xref_id":"0700251"}}}


id: PBO:0065237
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich 13 pseudogene 5","termid":"PBO:0065237"}


id: GO:0051788
data:
  {"annotated_genes":["SJAG_03657","SJAG_01737","SJAG_00270","SJAG_00219","SJAG_04612","SJAG_04567","SJAG_05022","SJAG_03345","SJAG_00173","SJAG_04187","SJAG_00552","SJAG_02419","SJAG_01160","SJAG_03815","SJAG_02341","SJAG_00054","SJAG_01556"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[111958,106113,72610,89885,111957,114256],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071218"},{"annotations":[109943,111589,111696,115593,112285],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071629"},{"annotations":[91083,89604,114953,105309],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0180027"},{"annotations":[112811,78323],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071630"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a misfolded protein stimulus.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to topologically incorrect protein","termid":"GO:0035966"}],"gene_count":17,"genes_by_uniquename":{"SJAG_00054":null,"SJAG_00173":null,"SJAG_00219":null,"SJAG_00270":null,"SJAG_00552":null,"SJAG_01160":null,"SJAG_01556":null,"SJAG_01737":null,"SJAG_02341":null,"SJAG_02419":null,"SJAG_03345":null,"SJAG_03657":null,"SJAG_03815":null,"SJAG_04187":null,"SJAG_04567":null,"SJAG_04612":null,"SJAG_05022":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to misfolded protein","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0051788","terms_by_termid":{"GO:0071218":null,"GO:0071629":null,"GO:0071630":null,"GO:0180027":null}}


id: GO:0060512
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of a prostate gland are generated and organized.","definition_xrefs":["PMID:18977204","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"gland morphogenesis","termid":"GO:0022612"},{"relation_name":"part_of","term_name":"prostate gland development","termid":"GO:0030850"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"prostate gland morphogenesis","termid":"GO:0060512"}


id: PBO:0066326
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger and CCCH-type domains 2","termid":"PBO:0066326"}


id: PBO:0047326
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FAU pseudogene 4","termid":"PBO:0047326"}


id: PBO:0108898
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RPL7L1 pseudogene 11","termid":"PBO:0108898"}


id: PBO:0054227
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1609","termid":"PBO:0054227"}


id: MONDO:0859358
data:
  {"annotated_genes":["SJAG_01240"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87370],"is_not":false,"summary":null,"term":"MONDO:0859358"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"familial isolated dilated cardiomyopathy","termid":"MONDO:0700335"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01240":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"cardiomyopathy, dilated, 2H","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5774296","MEDGEN:1824069","OMIM:620203"],"termid":"MONDO:0859358","terms_by_termid":{"MONDO:0859358":null},"xrefs":{"Monarch":{"xref_id":"0859358"}}}


id: GO:0003695
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binding to DNA in a random coil configuration.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete random coil DNA binding (obsolete GO:0003695)","synonyms":[{"name":"random coil binding","type":"exact"}],"termid":"GO:0003695"}


id: PBO:0031261
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_chromatin_silencing_at_telomere","termid":"PBO:0031261"}


id: MONDO:0001662
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete right bundle branch block (obsolete MONDO:0001662)","secondary_identifiers":["ICD9:426.51","SCTID:59118001","HP:0011712","ICD9:426.4","DOID:13209"],"synonyms":[{"name":"obsolete right bundle branch block (disease)","type":"exact"},{"name":"right bundle branch block","type":"exact"},{"name":"right bundle branch block with left posterior fascicular block","type":"exact"}],"termid":"MONDO:0001662","xrefs":{"Monarch":{"xref_id":"0001662"}}}


id: PBO:0064136
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyruvate kinase M1/2 pseudogene 3","termid":"PBO:0064136"}


id: MONDO:0019098
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An autoimmune form of thrombocytopenia.","definition_xrefs":["MONDO:patterns/autoimmune"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thrombocytopenia","termid":"MONDO:0002049"},{"relation_name":"is_a","term_name":"autoimmune disease","termid":"MONDO:0007179"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"autoimmune thrombocytopenia","secondary_identifiers":["UMLS:C0242584","MedDRA:10050245","MEDGEN:116621","Orphanet:71203","SCTID:128091003","GARD:18906"],"termid":"MONDO:0019098","xrefs":{"Monarch":{"xref_id":"0019098"}}}


id: MONDO:0009268
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Gaucher disease - ophthalmoplegia - cardiovascular calcification is a variant of Gaucher disease, also known as a Gaucher-like disease that is characterized by cardiac involvement.","definition_xrefs":["Orphanet:2072"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Gaucher disease","termid":"MONDO:0018150"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0002561"}],"interesting_parent_ids":["MONDO:0002525","MONDO:0002561","MONDO:0005328","MONDO:0005066"],"is_obsolete":false,"name":"Gaucher disease-ophthalmoplegia-cardiovascular calcification syndrome","secondary_identifiers":["SCTID:1156813002","MEDGEN:341563","OMIM:231005","DOID:0112250","MESH:C565553","UMLS:C1856476","GARD:12504"],"synonyms":[{"name":"Gaucher disease - ophthalmoplegia - cardiovascular calcification","type":"related"},{"name":"Gaucher disease type 3C","type":"exact"},{"name":"Gaucher disease, type 3C","type":"related"},{"name":"Gaucher disease, type IIIC","type":"related"},{"name":"Gaucher disease-ophthalmoplegia-cardiovascular calcification syndrome","type":"exact"},{"name":"Gaucher-like disease","type":"exact"},{"name":"cardiovascular Gaucher disease","type":"exact"},{"name":"pseudo Gaucher disease","type":"related"}],"termid":"MONDO:0009268","xrefs":{"Monarch":{"xref_id":"0009268"}}}


id: GO:0008302
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Recruitment and organization of actin filaments in female germline ring canals.","definition_xrefs":["ISBN:0879694238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"actin filament organization","termid":"GO:0007015"},{"relation_name":"part_of","term_name":"female germline ring canal formation","termid":"GO:0007301"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007010"},{"rel_name":"part_of","termid":"GO:0030036"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0030036","GO:0007010","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"female germline ring canal formation, actin assembly","synonyms":[{"name":"nurse cell ring canal formation, actin assembly","type":"narrow"},{"name":"ovarian ring canal formation, actin assembly","type":"narrow"},{"name":"ring canal formation, actin assembly","type":"broad"}],"termid":"GO:0008302"}


id: GO:0072391
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of phenol, a compound that consists of a benzene ring with one attached hydroxyl group.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenol-containing compound biosynthetic process","termid":"GO:0046189"},{"relation_name":"is_a","term_name":"phenol metabolic process","termid":"GO:0072390"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"phenol biosynthetic process","termid":"GO:0072391"}


id: PBO:0039611
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ANTXR like pseudogene 1","termid":"PBO:0039611"}


id: PR:P47979
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- zfs1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P47979"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein zfs1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1718.07c","synonyms":[{"name":"Spom972h-zfs1","type":"exact"},{"name":"multicopy suppressor of overexpressed cyr1 protein 4 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P47979"}


id: PR:Q10434
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An F-actin-capping protein subunit alpha-2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"F-actin-capping protein subunit alpha (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC12B10.07","secondary_identifiers":["UniProtKB:Q10434"],"synonyms":[{"name":"SPAC12B10.07","type":"related"},{"name":"Spom972h-CAPZA2","type":"exact"}],"termid":"PR:Q10434"}


id: GO:0052502
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which an organism activates, maintains or increases the frequency, rate or extent of symbiont MAP kinase-mediated signal transduction pathways during the symbiont defense response. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation by host of defense-related symbiont MAP kinase-mediated signal transduction pathway (obsolete GO:0052502)","synonyms":[{"name":"activation by host of defense-related symbiont MAP kinase-mediated signal transduction pathway","type":"narrow"},{"name":"activation by organism of defense-related symbiont MAP kinase-mediated signal transduction pathway","type":"narrow"},{"name":"induction by organism of defense-related symbiont MAP kinase-mediated signal transduction pathway","type":"narrow"},{"name":"positive regulation by organism of defense-related symbiont MAPK-mediated signal transduction pathway","type":"exact"},{"name":"positive regulation by organism of defense-related symbiont mitogen-activated protein kinase-mediated signal transduction pathway","type":"exact"},{"name":"stimulation by host of defense-related symbiont MAP kinase-mediated signal transduction pathway","type":"narrow"},{"name":"up regulation by host of defense-related symbiont MAP kinase-mediated signal transduction pathway","type":"exact"},{"name":"up-regulation by host of defense-related symbiont MAP kinase-mediated signal transduction pathway","type":"exact"},{"name":"upregulation by host of defense-related symbiont MAP kinase-mediated signal transduction pathway","type":"exact"},{"name":"upregulation by organism of defense-related symbiont MAP kinase-mediated signal transduction pathway","type":"narrow"}],"termid":"GO:0052502"}


id: PBO:0052587
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysine rich nucleolar protein 1 pseudogene 5","termid":"PBO:0052587"}


id: GO:0060846
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The commitment of a cell to a blood vessel endothelial cell fate and its capacity to differentiate into a blood vessel endothelial cell.","definition_xrefs":["GOC:dph","GOC:tb","GOC:sdb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"endothelial cell fate commitment","termid":"GO:0060839"},{"relation_name":"part_of","term_name":"blood vessel endothelial cell differentiation","termid":"GO:0060837"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"blood vessel endothelial cell fate commitment","termid":"GO:0060846"}


id: PBO:0078953
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Arg (anticodon TCT) 4-1","termid":"PBO:0078953"}


id: PBO:0002924
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complemented by human U2AF35","termid":"PBO:0002924"}


id: PBO:0078970
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ser (anticodon CGA) 2-1","termid":"PBO:0078970"}


id: GO:0052149
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which an organism effects a change in host peptidase activity, the catalysis of the hydrolysis of peptide bonds in a protein. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation by symbiont of host peptidase activity (obsolete GO:0052149)","synonyms":[{"name":"modulation by symbiont of host protease activity","type":"narrow"}],"termid":"GO:0052149"}


id: PBO:0002049
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"U5 snRNP-associated protein Aar2 (predicted)","termid":"PBO:0002049"}


id: MONDO:0007898
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"leukocyte nuclear appendages, hereditary prevalence of","secondary_identifiers":["MESH:C563626","OMIM:151500","MEDGEN:320594","UMLS:C1835405"],"synonyms":[{"name":"leukocyte nuclear appendages, hereditary prevalence of","type":"exact"}],"termid":"MONDO:0007898","xrefs":{"Monarch":{"xref_id":"0007898"}}}


id: PBO:0067171
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 225, pseudogene","termid":"PBO:0067171"}


id: MONDO:0020039
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete 46,XX disorder of sex development induced by androgens excess (obsolete MONDO:0020039)","secondary_identifiers":["Orphanet:98078"],"synonyms":[{"name":"46,XX DSD induced by androgens excess","type":"exact"}],"termid":"MONDO:0020039","xrefs":{"Monarch":{"xref_id":"0020039"}}}


id: PBO:0044886
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"density regulated re-initiation and release factor","termid":"PBO:0044886"}


id: FYPO:0000054
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype that affects the organization of the microtubule cytoskeleton. Microtubule cytoskeleton organization is a cellular process that results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins.","definition_xrefs":["GO:0000226","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubule cytoskeleton organization phenotype","termid":"FYPO:0000297"},{"relation_name":"is_a","term_name":"abnormal cytoskeleton organization","termid":"FYPO:0000802"}],"gene_count":0,"genotype_count":0,"in_subsets":["fypo_slim"],"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"abnormal microtubule cytoskeleton organization","secondary_identifiers":["FYPO:0000053"],"synonyms":[{"name":"abnormal microtubule cytoskeleton organisation","type":"exact"},{"name":"abnormal microtubule organisation","type":"related"},{"name":"abnormal microtubule organization","type":"related"},{"name":"disorganized microtubule cytoskeleton","type":"related"},{"name":"microtubule cytoskeleton defects","type":"exact"},{"name":"microtubule organization defects","type":"related"}],"termid":"FYPO:0000054"}


id: MONDO:0045018
data:
  {"annotated_genes":["SJAG_02271"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87276],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012999"}]},"cv_name":"mondo","definition":"A disease that has its basis in the disruption of creatine biosynthetic process.","definition_xrefs":["MONDO:design_pattern"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid metabolism disease","termid":"MONDO:0037871"},{"relation_name":"is_a","term_name":"disorder of organic acid metabolism","termid":"MONDO:0045022"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02271":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"creatine biosynthetic process disease","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["SCTID:297226004","MEDGEN:657799","UMLS:C0574079"],"synonyms":[{"name":"creatine synthesis disease","type":"exact"},{"name":"disorder of creatine biosynthetic process","type":"exact"},{"name":"disorder of creatine synthesis","type":"exact"}],"termid":"MONDO:0045018","terms_by_termid":{"MONDO:0012999":null},"xrefs":{"Monarch":{"xref_id":"0045018"}}}


id: PBO:0052898
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 10-9","termid":"PBO:0052898"}


id: MONDO:0000993
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An invasive prostate carcinoma characterized by the presence of squamous differentiation of the malignant cellular infiltrate. There is no evidence of glandular differentiation.","definition_xrefs":["NCIT:C5536"],"direct_ancestors":[{"relation_name":"is_a","term_name":"squamous cell carcinoma","termid":"MONDO:0005096"},{"relation_name":"is_a","term_name":"prostate carcinoma","termid":"MONDO:0005159"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"prostate squamous cell carcinoma","secondary_identifiers":["MEDGEN:226996","SCTID:399590005","DOID:10287","UMLS:C1302530","ONCOTREE:PRSC"],"synonyms":[{"name":"PRSC","type":"related"},{"name":"prostate gland squamous cell carcinoma","type":"exact"},{"name":"prostate squamous cell carcinoma","type":"exact"},{"name":"squamous cell carcinoma of prostate","type":"exact"},{"name":"squamous cell carcinoma of the prostate","type":"exact"}],"termid":"MONDO:0000993","xrefs":{"Monarch":{"xref_id":"0000993"}}}


id: PBO:0042350
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CD84 molecule","termid":"PBO:0042350"}


id: MONDO:0014400
data:
  {"annotated_genes":["SJAG_00531"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88092],"is_not":false,"summary":null,"term":"MONDO:0014400"}]},"cv_name":"mondo","definition":"Any retinitis pigmentosa in which the cause of the disease is a mutation in the PRPF4 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinitis pigmentosa","termid":"MONDO:0019200"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00531":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0004736","MONDO:0005066"],"is_obsolete":false,"name":"retinitis pigmentosa 70","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0110392","MEDGEN:863118","OMIM:615922","GARD:16032","ICD10CM:H35.5","UMLS:C4014681"],"synonyms":[{"name":"PRPF4 retinitis pigmentosa","type":"exact"},{"name":"RP70","type":"exact"},{"name":"retinitis pigmentosa 70","type":"exact"},{"name":"retinitis pigmentosa caused by mutation in PRPF4","type":"exact"},{"name":"retinitis pigmentosa type 70","type":"exact"}],"termid":"MONDO:0014400","terms_by_termid":{"MONDO:0014400":null},"xrefs":{"Monarch":{"xref_id":"0014400"}}}


id: PBO:0065409
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proteasome 20S subunit alpha 7","termid":"PBO:0065409"}


id: PBO:0058989
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MLLT11 transcription factor 7 cofactor","termid":"PBO:0058989"}


id: PR:O74522
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- adn3 gene.","definition_xrefs":["UniProtKB:O74522","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adhesion defective protein 3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1494.10","synonyms":[{"name":"LisH domain-containing protein adn3 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-adn3","type":"exact"}],"termid":"PR:O74522"}


id: MONDO:0009640
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete mitochondrial complex I deficiency, nuclear type (obsolete MONDO:0009640)","termid":"MONDO:0009640","xrefs":{"Monarch":{"xref_id":"0009640"}}}


id: PBO:0089637
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mug129-like protein Mug129a","termid":"PBO:0089637"}


id: PBO:0058629
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6761","termid":"PBO:0058629"}


id: PBO:0085497
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Proteasome polyubiquitin receptor; non-ATPase subunit of the 19S regulatory particle (RP) of the 26S proteasome that links the RP base to the lid; N-terminus plays a role in the assembly of the regulatory particle (RP); ubiquitin-interacting motif selectively binds to polyubiquitin chains; homolog of the mammalian S5a protein","termid":"PBO:0085497"}


id: GO:1905066
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of canonical Wnt signaling pathway involved in heart development.","definition_xrefs":["GOC:bc","GOC:BHF","GOC:BHF_miRNA","PMID:25034767","GO_REF:0000058","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of canonical Wnt signaling pathway involved in heart development (obsolete GO:1905066)","synonyms":[{"name":"regulation of canonical Wnt receptor signaling pathway involved in heart development","type":"exact"},{"name":"regulation of canonical Wnt receptor signalling pathway involved in heart development","type":"exact"},{"name":"regulation of canonical Wnt-activated signaling pathway involved in heart development","type":"exact"}],"termid":"GO:1905066"}


id: PBO:0043915
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cardiomyocyte maturation associated lncRNA","termid":"PBO:0043915"}


id: PBO:0041864
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"caspase 9","termid":"PBO:0041864"}


id: GO:0031996
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a thioesterase.","definition_xrefs":["GOC:dl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme binding","termid":"GO:0019899"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"thioesterase binding","synonyms":[{"name":"thiolesterase binding","type":"exact"}],"termid":"GO:0031996"}


id: GO:1901759
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving beta-L-Ara4N-lipid A.","definition_xrefs":["PMID:19166326","GOC:yaf","PMID:17928292","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipid metabolic process","termid":"GO:0006644"},{"relation_name":"is_a","term_name":"glycolipid metabolic process","termid":"GO:0006664"},{"relation_name":"is_a","term_name":"lipooligosaccharide metabolic process","termid":"GO:1901269"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"beta-L-Ara4N-lipid A metabolic process","synonyms":[{"name":"4-amino-4-deoxy-beta-L-arabinose-lipid A metabolic process","type":"exact"},{"name":"4-amino-4-deoxy-beta-L-arabinose-lipid A metabolism","type":"exact"},{"name":"beta-L-Ara4N-lipid A metabolism","type":"exact"}],"termid":"GO:1901759"}


id: GO:0098820
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that spans the synaptic cleft and has parts in both the pre- and post-synaptic membranes.","definition_xrefs":["PMID:20200227"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"trans-synaptic protein complex","termid":"GO:0098820"}


id: MONDO:0009723
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A progressive neurological disease defined by specific neuropathological features associating brainstem and basal ganglia lesions.","definition_xrefs":["Orphanet:506"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete neuro-ophthalmological disease (obsolete MONDO:0015368)","termid":"MONDO:0015368"},{"relation_name":"excluded_subClassOf","term_name":"supranuclear oculomotor palsy","termid":"MONDO:0020257"},{"relation_name":"is_a","term_name":"mitochondrial oxidative phosphorylation disorder","termid":"MONDO:0016387"},{"relation_name":"is_a","term_name":"hereditary peripheral neuropathy","termid":"MONDO:0020127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0004069","MONDO:0005066","MONDO:0005244"],"is_obsolete":false,"name":"Leigh syndrome","secondary_identifiers":["NANDO:2200527","OMIM:256000","UMLS:C2931891","NCIT:C84814","MESH:D007888","GARD:6877","DOID:3652","ICD9:330.8","MedDRA:10062950","MEDGEN:419518","SCTID:29570005","icd11.foundation:672871576","NANDO:1200175"],"synonyms":[{"name":"LS","type":"exact"},{"name":"LSS","type":"exact"},{"name":"Leigh disease","type":"exact"},{"name":"Leigh syndrome","type":"exact"},{"name":"Leigh syndrome due to mitochondrial Complex 1 deficiency","type":"related"},{"name":"Leigh syndrome due to mitochondrial Complex 2 deficiency","type":"related"},{"name":"Leigh syndrome due to mitochondrial Complex 3 deficiency","type":"related"},{"name":"Leigh syndrome due to mitochondrial Complex 4 deficiency","type":"related"},{"name":"Leigh syndrome due to mitochondrial Complex 5 deficiency","type":"related"},{"name":"Leigh syndrome spectrum","type":"exact"},{"name":"Leigh's disease","type":"exact"},{"name":"Leigh's necrotizing encephalopathy","type":"related"},{"name":"SNE","type":"related"},{"name":"infantile necrotizing encephalomyelopathy","type":"exact"},{"name":"infantile subacute necrotizing encephalopathy","type":"exact"},{"name":"juvenile subacute necrotizing encephalomyelopathy","type":"exact"},{"name":"necrotizing encephalopathy, infantile Subacute, of Leigh","type":"related"},{"name":"subacute necrotizing encephalomyelopathy","type":"related"},{"name":"subacute necrotizing encephalopathy","type":"related"}],"termid":"MONDO:0009723","xrefs":{"Monarch":{"xref_id":"0009723"}}}


id: GO:0061970
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The organization process that preserves the right sidedness in an organism's body plan or part of an organism with respect to the left and right halves.","definition_xrefs":["GOC:BHF","PMID:18629866"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maintenance of left/right asymmetry","termid":"GO:0061968"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"maintenance of right sidedness","termid":"GO:0061970"}


id: FYPO:0002818
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which cells contain fewer microtubule bundles than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal microtubule cytoskeleton during vegetative growth","termid":"FYPO:0004315"},{"relation_name":"is_a","term_name":"abnormal microtubule bundle","termid":"FYPO:0005558"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0002399"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000054","FYPO:0001985","FYPO:0001320","FYPO:0002399","FYPO:0000002"],"is_obsolete":false,"name":"microtubule bundles present in decreased numbers","synonyms":[{"name":"decreased level of MT bundles","type":"exact"},{"name":"decreased microtubule bundling","type":"related"},{"name":"microtubule arrays present in decreased numbers","type":"related"},{"name":"microtubule bundles present in reduced numbers","type":"exact"}],"termid":"FYPO:0002818"}


id: PBO:0065718
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Prader Willi/Angelman region RNA 4","termid":"PBO:0065718"}


id: GO:0061408
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.","definition_xrefs":["GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transcription from RNA polymerase II promoter in response to heat stress (obsolete GO:0061408)","termid":"GO:0061408"}


id: GO:0034111
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of homotypic cell-cell adhesion.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell-cell adhesion","termid":"GO:0022408"},{"relation_name":"is_a","term_name":"regulation of homotypic cell-cell adhesion","termid":"GO:0034110"},{"relation_name":"negatively_regulates","term_name":"homotypic cell-cell adhesion","termid":"GO:0034109"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"negative regulation of homotypic cell-cell adhesion","termid":"GO:0034111"}


id: PBO:0054086
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1438","termid":"PBO:0054086"}


id: PBO:0049054
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor 53, pseudogene","termid":"PBO:0049054"}


id: PBO:0066163
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBFA downstream neighbor","termid":"PBO:0066163"}


id: PBO:0088844
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endonuclease activator Ctp1","termid":"PBO:0088844"}


id: PBO:0056025
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LSP1 pseudogene 3","termid":"PBO:0056025"}


id: PBO:0004135
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin C-terminal hydrolase Ubp14","termid":"PBO:0004135"}


id: PBO:0091658
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"plasma membrane ferric-chelate reductase Frp1","termid":"PBO:0091658"}


id: GO:2001211
data:
  {"annotated_genes":["SJAG_02380","SJAG_01187"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[113334,117464],"is_not":false,"summary":null,"term":"GO:2001211"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of isopentenyl diphosphate biosynthetic process, mevalonate pathway.","definition_xrefs":["GOC:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of amide metabolic process","termid":"GO:0034249"},{"relation_name":"is_a","term_name":"negative regulation of isoprenoid metabolic process","termid":"GO:0045827"},{"relation_name":"is_a","term_name":"negative regulation of nucleobase-containing compound metabolic process","termid":"GO:0045934"},{"relation_name":"is_a","term_name":"negative regulation of sulfur metabolic process","termid":"GO:0051175"},{"relation_name":"is_a","term_name":"negative regulation of small molecule metabolic process","termid":"GO:0062014"},{"relation_name":"is_a","term_name":"negative regulation of phospholipid biosynthetic process","termid":"GO:0071072"},{"relation_name":"is_a","term_name":"regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway","termid":"GO:2001210"},{"relation_name":"negatively_regulates","term_name":"isopentenyl diphosphate biosynthetic process, mevalonate pathway","termid":"GO:0019287"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01187":null,"SJAG_02380":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0055086"},{"rel_name":"negatively_regulates","termid":"GO:0055086"},{"rel_name":"negatively_regulates","termid":"GO:0006629"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0006790"},{"rel_name":"regulates","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0006790","GO:0006629","GO:0044281","GO:0055086","GO:0008150"],"is_obsolete":false,"name":"negative regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"negative regulation of Ac-MVA pathway","type":"exact"},{"name":"negative regulation of acetate-mevalonate pathway","type":"exact"},{"name":"negative regulation of isopentenyl diphosphate anabolism, mevalonate pathway","type":"exact"},{"name":"negative regulation of isopentenyl diphosphate formation, mevalonate pathway","type":"exact"},{"name":"negative regulation of isopentenyl diphosphate synthesis, mevalonate pathway","type":"exact"}],"termid":"GO:2001211","terms_by_termid":{"GO:2001211":null}}


id: MONDO:0014144
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A form of limb-girdle muscular dystrophy characterized by childhood-onset of progressive proximal muscle weakness (leading to reduced ambulation) with myalgia and fatigue, in addition to infantile hyperkinetic movements, truncal ataxia, and intellectual disability. Additional manifestations include scoliosis, hip dysplasia, and less commonly, ocular features (e.g. myopia, cataract) and seizures.","definition_xrefs":["Orphanet:369840","PMID:30055862"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive limb-girdle muscular dystrophy","termid":"MONDO:0015152"},{"relation_name":"is_a","term_name":"intellectual disability-hyperkinetic movement-truncal ataxia syndrome","termid":"MONDO:0018243"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0005336","MONDO:0006025"],"is_obsolete":false,"name":"autosomal recessive limb-girdle muscular dystrophy type R18","secondary_identifiers":["OMIM:615356","MEDGEN:1385598","GARD:12543","DOID:0110287","UMLS:C4517996"],"synonyms":[{"name":"LGMD2S","type":"exact"},{"name":"TRAPPC11 autosomal recessive limb-girdle muscular dystrophy","type":"exact"},{"name":"autosomal recessive limb-girdle muscular dystrophy caused by mutation in TRAPPC11","type":"exact"},{"name":"autosomal recessive limb-girdle muscular dystrophy type 2S","type":"exact"},{"name":"limb-girdle muscular dystrophy type 2S","type":"related"},{"name":"muscular dystrophy, limb-girdle, autosomal recessive 18","type":"exact"},{"name":"muscular dystrophy, limb-girdle, type 2S","type":"exact"}],"termid":"MONDO:0014144","xrefs":{"Monarch":{"xref_id":"0014144"}}}


id: MONDO:0015421
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Orofaciodigital syndrome type 12 is a rare subtype of orofaciodigital syndrome, with sporadic occurrence, characterized by cardiac (septum hypertrophy) and central nervous system abnormalities (myelomeningocele, Sylvius aqueduct stenosis, corpus callosum agenesis, vermis hypoplasia), in addition to oral, facial and digital malformations (gingival frenulae, bifid tongue, supernumerary teeth, macrocephaly, hypertelorism, pre- and post-axial polydactyly in hands, preaxial polydactyly in feet and club feet). Skeletal anomalies, such as short tibiae and central, Y-shaped metacarpals, are also associated.","definition_xrefs":["Orphanet:141327"],"direct_ancestors":[{"relation_name":"is_a","term_name":"orofaciodigital syndrome","termid":"MONDO:0015375"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"orofaciodigital syndrome type 12","secondary_identifiers":["GARD:10693","MEDGEN:420948","SCTID:763834000","MESH:C548034","UMLS:C2932679"],"synonyms":[{"name":"Moran-Barroso syndrome","type":"exact"},{"name":"OFD12","type":"exact"},{"name":"OFDS 12","type":"related"},{"name":"oral facial digital syndrome 12","type":"related"},{"name":"oral facial digital syndrome type 12","type":"related"},{"name":"oral-facial-digital syndrome 12","type":"related"},{"name":"oral-facial-digital syndrome type 12","type":"exact"},{"name":"orofaciodigital syndrome 12","type":"related"},{"name":"orofaciodigital syndrome XII","type":"related"}],"termid":"MONDO:0015421","xrefs":{"Monarch":{"xref_id":"0015421"}}}


id: PBO:0056134
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysozyme like 4","termid":"PBO:0056134"}


id: PBO:0063969
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 3","termid":"PBO:0063969"}


id: PR:O94657
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- xdj1 gene.","definition_xrefs":["UniProtKB:O94657","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DnaJ protein homolog xdj1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC405.06","synonyms":[{"name":"Spom972h-xdj1","type":"exact"}],"termid":"PR:O94657"}


id: PBO:0062743
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 52 subfamily H member 2 pseudogene","termid":"PBO:0062743"}


id: MONDO:0008284
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"polyposis","termid":"MONDO:0000147"},{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polyposis of gastric fundus without polyposis coli","secondary_identifiers":["OMIM:175505","MESH:C566775","UMLS:C1868001","MEDGEN:357403"],"synonyms":[{"name":"fundic gland polyposis","type":"related"},{"name":"polyposis of gastric fundus without polyposis coli","type":"exact"}],"termid":"MONDO:0008284","xrefs":{"Monarch":{"xref_id":"0008284"}}}


id: GO:0042291
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete Hub1 hydrolase activity (obsolete GO:0042291)","synonyms":[{"name":"Hub1 hydrolase activity","type":"exact"}],"termid":"GO:0042291"}


id: GO:0090114
data:
  {"annotated_genes":["SJAG_05345","SJAG_02539","SJAG_03153","SJAG_03558","SJAG_02349","SJAG_00072","SJAG_05344","SJAG_03907"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[74766],"is_not":false,"summary":null,"term":"GO:0090114"},{"annotations":[77405,78295,76599,76957,80243,78871,73087],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0090110"}]},"cv_name":"biological_process","definition":"The evagination of an endoplasmic reticulum membrane, resulting in formation of a COPII-coated vesicle.","definition_xrefs":["GOC:dph","GOC:tb","GOC:ascb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle budding from membrane","termid":"GO:0006900"},{"relation_name":"part_of","term_name":"endoplasmic reticulum to Golgi vesicle-mediated transport","termid":"GO:0006888"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00072":null,"SJAG_02349":null,"SJAG_02539":null,"SJAG_03153":null,"SJAG_03558":null,"SJAG_03907":null,"SJAG_05344":null,"SJAG_05345":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0061024","GO:0016192"],"is_obsolete":false,"name":"COPII-coated vesicle budding","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"COPII vesicle budding","type":"related"},{"name":"ER exit","type":"narrow"},{"name":"ER vesicle budding","type":"broad"}],"termid":"GO:0090114","terms_by_termid":{"GO:0090110":null,"GO:0090114":null}}


id: MONDO:0004136
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign neoplasm of the ovary characterized by the presence of cystic structures lined by endometrial-type well-differentiated cells.","definition_xrefs":["NCIT:C40075"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ovarian cystadenoma","termid":"MONDO:0005183"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ovarian endometrioid cystadenoma","secondary_identifiers":["MEDGEN:309509","UMLS:C1518713","DOID:7191"],"synonyms":[{"name":"ovarian endometrioid cystadenoma","type":"exact"}],"termid":"MONDO:0004136","xrefs":{"Monarch":{"xref_id":"0004136"}}}


id: GO:0032352
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving any hormone.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of metabolic process","termid":"GO:0009893"},{"relation_name":"is_a","term_name":"regulation of hormone metabolic process","termid":"GO:0032350"},{"relation_name":"positively_regulates","term_name":"hormone metabolic process","termid":"GO:0042445"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of hormone metabolic process","synonyms":[{"name":"activation of hormone metabolic process","type":"narrow"},{"name":"positive regulation of hormone metabolism","type":"exact"},{"name":"stimulation of hormone metabolic process","type":"narrow"},{"name":"up regulation of hormone metabolic process","type":"exact"},{"name":"up-regulation of hormone metabolic process","type":"exact"},{"name":"upregulation of hormone metabolic process","type":"exact"}],"termid":"GO:0032352"}


id: PBO:0057363
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 548ag-1","termid":"PBO:0057363"}


id: PR:O94438
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rps102 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94438"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S1-B (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22H12.04c","synonyms":[{"name":"S3aE-B (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-rps102","type":"exact"}],"termid":"PR:O94438"}


id: PBO:0002142
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA cleavage and polyadenylation specificity factor complex endoribonuclease subunit Ysh1","termid":"PBO:0002142"}


id: GO:0070531
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that contains the BRCA1-BARD1 heterodimer, RAP80/UIMC1, BRCC3/BRCC36, BRE/BRCC45, FAM175A/CCDC98/Abraxas and MERIT40/NBA1, and specifically recognizes and binds K63-linked polyubiquitin chains present on histone H2A and H2AX at DNA damage sites.","definition_xrefs":["PMID:19261749","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"BRCA1-A complex","termid":"GO:0070531"}


id: GO:0042736
data:
  {"annotated_genes":["SJAG_03946","SJAG_01566"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[98334,99349],"is_not":false,"summary":null,"term":"GO:0042736"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + NADH = ADP + 2 H+ + NADPH.","definition_xrefs":["EC:2.7.1.86","RHEA:12260"],"direct_ancestors":[{"relation_name":"is_a","term_name":"kinase activity","termid":"GO:0016301"},{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01566":null,"SJAG_03946":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016301"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016301","GO:0016740"],"is_obsolete":false,"name":"NADH kinase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["KEGG_REACTION:R00105","MetaCyc:NADH-KINASE-RXN"],"synonyms":[{"name":"ATP:NADH 2'-phosphotransferase activity","type":"related"},{"name":"DPNH kinase activity","type":"related"},{"name":"reduced diphosphopyridine nucleotide kinase activity","type":"related"},{"name":"reduced nicotinamide adenine dinucleotide kinase (phosphorylating)","type":"related"}],"termid":"GO:0042736","terms_by_termid":{"GO:0042736":null}}


id: GO:1901343
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of vasculature development.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"is_a","term_name":"regulation of vasculature development","termid":"GO:1901342"},{"relation_name":"negatively_regulates","term_name":"vasculature development","termid":"GO:0001944"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of vasculature development","synonyms":[{"name":"down regulation of vascular system development","type":"related"},{"name":"down regulation of vasculature development","type":"exact"},{"name":"down-regulation of vascular system development","type":"related"},{"name":"down-regulation of vasculature development","type":"exact"},{"name":"downregulation of vascular system development","type":"related"},{"name":"downregulation of vasculature development","type":"exact"},{"name":"inhibition of vascular system development","type":"related"},{"name":"inhibition of vasculature development","type":"narrow"},{"name":"negative regulation of vascular system development","type":"related"}],"termid":"GO:1901343"}


id: GO:1903224
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of endodermal cell differentiation.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","GOC:als","PMID:23154389"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell differentiation","termid":"GO:0045595"},{"relation_name":"regulates","term_name":"endodermal cell differentiation","termid":"GO:0035987"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of endodermal cell differentiation","synonyms":[{"name":"regulation of endoderm cell differentiation","type":"exact"}],"termid":"GO:1903224"}


id: PBO:0053498
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 477","termid":"PBO:0053498"}


id: GO:1903988
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of iron ions from inside of a cell, across the plasma membrane and into the extracellular region.","definition_xrefs":["GOC:kom","GO_REF:0000074","GOC:rl","GOC:TermGenie","PMID:15514116","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iron ion transmembrane transport","termid":"GO:0034755"},{"relation_name":"is_a","term_name":"export across plasma membrane","termid":"GO:0140115"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0055085","GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"iron ion export across plasma membrane","secondary_identifiers":["GO:1903414"],"synonyms":[{"name":"ferrous iron export","type":"narrow"},{"name":"ferrous iron export across plasma membrane","type":"narrow"},{"name":"iron cation export","type":"related"},{"name":"iron(2+) export","type":"related"}],"termid":"GO:1903988"}


id: MONDO:0005060
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A usually painless malignant tumor that arises from adipose tissue. Microscopically, it may contain a spectrum of neoplastic adipocytes ranging from lipoblasts to pleomorphic malignant adipocytes. Morphologic variants include: well differentiated, dedifferentiated, pleomorphic, and myxoid liposarcoma. The metastatic potential is higher in less differentiated tumors.","definition_xrefs":["NCIT:C3194"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lipomatous cancer","termid":"MONDO:0002813"},{"relation_name":"is_a","term_name":"soft tissue sarcoma","termid":"MONDO:0018078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"liposarcoma","secondary_identifiers":["ICDO:8850/3","DOID:3382","GARD:6913","MESH:D008080","ONCOTREE:LIPO","NANDO:2200065","MEDGEN:44177","SCTID:254829001","UMLS:C0023827","MedDRA:10024627","Orphanet:69078","ICD9:171.9","EFO:0000569"],"synonyms":[{"name":"lip sarcoma","type":"exact"},{"name":"liposarcoma","type":"exact"},{"name":"liposarcoma, malignant","type":"exact"},{"name":"sarcoma of lip","type":"exact"}],"termid":"MONDO:0005060","xrefs":{"Monarch":{"xref_id":"0005060"}}}


id: PBO:0026685
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_cell_population_growth_at_high_temperature","termid":"PBO:0026685"}


id: PBO:0044638
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decapping mRNA 1A","termid":"PBO:0044638"}


id: GO:0044421
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Any constituent part of the extracellular region, the space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers constituent parts of the host cell environment outside an intracellular parasite.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete extracellular region part (obsolete GO:0044421)","synonyms":[{"name":"extracellular structure","type":"related"}],"termid":"GO:0044421"}


id: PBO:0090166
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent RNA helicase Dbp6","termid":"PBO:0090166"}


id: GO:1900419
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of alcohol catabolic process within a cell.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of catabolic process","termid":"GO:0009894"},{"relation_name":"is_a","term_name":"regulation of small molecule metabolic process","termid":"GO:0062012"},{"relation_name":"regulates","term_name":"alcohol catabolic process","termid":"GO:0046164"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"regulation of alcohol catabolic process","termid":"GO:1900419"}


id: PBO:0030218
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_alpha,alpha-trehalase_activity","termid":"PBO:0030218"}


id: PR:Q9P7J0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC24B10.16c gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P7J0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C24B10.16c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC24B10.16c","synonyms":[{"name":"Spom972h-SPCC24B10.16c","type":"exact"}],"termid":"PR:Q9P7J0"}


id: MONDO:0700216
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Neoplasm associated with expression of a RET (REarranged during Transfection) fusion. RET fusion-positive tumors have been identified in a broad range of solid tumor types, including multiple endocrine neoplasia 2 (MEN2), papillary thyroid carcinoma (PTC), non-small cell lung cancer (NSCLC), invasive breast cancers, and pancreatic ductal adenocarcinomas in addition to colorectal adenocarcinoma, melanoma, small cell lung cancer, neuroblastoma, and small intestine neuroendocrine tumors.","definition_xrefs":["PMID:31715421"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neoplasm","termid":"MONDO:0005070"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RET fusion positive cancer","synonyms":[{"name":"RET fusion positive neoplasm","type":"exact"},{"name":"RET fusion positive solid tumor","type":"exact"},{"name":"RET fusion positive solid tumour","type":"exact"}],"termid":"MONDO:0700216","xrefs":{"Monarch":{"xref_id":"0700216"}}}


id: GO:0031204
data:
  {"annotated_genes":["SJAG_00959","SJAG_00064","SJAG_03396","SJAG_02354","SJAG_02588"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[74919,82041,99206,99923,110251],"is_not":false,"summary":null,"term":"GO:0031204"}]},"cv_name":"biological_process","definition":"The process in which a protein translocates through the ER membrane posttranslationally.","definition_xrefs":["PMID:8707814","PMID:12518317"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein transmembrane transport","termid":"GO:0065002"},{"relation_name":"part_of","term_name":"post-translational protein targeting to endoplasmic reticulum membrane","termid":"GO:0006620"}],"gene_count":5,"genes_by_uniquename":{"SJAG_00064":null,"SJAG_00959":null,"SJAG_02354":null,"SJAG_02588":null,"SJAG_03396":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0006605"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006605","GO:0055085","GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"post-translational protein targeting to membrane, translocation","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"posttranslational protein membrane targeting, translocation","type":"exact"},{"name":"posttranslational protein targeting to membrane, translocation","type":"exact"},{"name":"protein translocation during posttranslational protein targeting to membrane","type":"exact"}],"termid":"GO:0031204","terms_by_termid":{"GO:0031204":null}}


id: FYPO:0003577
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the transport of a substance from the plasma membrane to the vacuole does not occur when the cell is subject to, or recovering from, nitrogen starvation. Transport normally occurs in two stages, plasma membrane to endosome followed by endosome to vacuole transport.","definition_xrefs":["PomBase:mah","PMID:22194353"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal vacuolar transport","termid":"FYPO:0003578"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"abolished plasma membrane to vacuole transport after nitrogen starvation","synonyms":[{"name":"abolished plasma membrane to vacuole protein transport after nitrogen starvation","type":"narrow"}],"termid":"FYPO:0003577"}


id: MONDO:0002581
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An uncommon variant of rhabdomyosarcoma characterized by the presence of whorls of spindle cells forming a storiform pattern. In children it usually arises in the paratesticular region. In adults it usually arises from the deep soft tissues in the head and neck.","definition_xrefs":["NCIT:C6519"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"embryonal rhabdomyosarcoma","termid":"MONDO:0009993"},{"relation_name":"is_a","term_name":"spindle cell sarcoma","termid":"MONDO:0002927"},{"relation_name":"is_a","term_name":"rhabdomyosarcoma","termid":"MONDO:0005212"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"spindle cell rhabdomyosarcoma","secondary_identifiers":["DOID:3260","SCTID:404055006","ICD9:171.9","ONCOTREE:SCRMS","UMLS:C1266134","ICDO:8912/3","MEDGEN:224766"],"synonyms":[{"name":"SCRMS","type":"related"},{"name":"spindle cell rhabdomyosarcoma (morphologic abnormality)","type":"exact"}],"termid":"MONDO:0002581","xrefs":{"Monarch":{"xref_id":"0002581"}}}


id: GO:0005216
data:
  {"annotated_genes":["SJAG_03895","SJAG_00915","SJAG_01168","SJAG_02019","SJAG_00438","SJAG_00048","SJAG_00836","SJAG_MIT09","SJAG_MIT37","SJAG_00542","SJAG_04471","SJAG_02877","SJAG_MIT15","SJAG_02564","SJAG_00985","SJAG_02598","SJAG_03114","SJAG_05342","SJAG_04122","SJAG_02532","SJAG_01090","SJAG_05204","SJAG_00133","SJAG_03925","SJAG_04668","SJAG_05229","SJAG_07003","SJAG_02105","SJAG_02322"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[79033,74172,116417],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005262"},{"annotations":[81627,74790],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005227"},{"annotations":[72154],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005254"},{"annotations":[76209],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008331"},{"annotations":[105669],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140135"},{"annotations":[97545],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008381"},{"annotations":[121088,121081,57995,109746,71916,121075,79914,71623,79590,74492,81112,95124,95715,109838,77585,103716,96705],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046933"},{"annotations":[101510,94247,115901,94189],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015275"},{"annotations":[73435],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008308"}]},"cv_name":"molecular_function","definition":"Enables the facilitated diffusion of a monoatomic ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729","GOC:pr","GOC:cy"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoatomic ion transmembrane transporter activity","termid":"GO:0015075"},{"relation_name":"is_a","term_name":"channel activity","termid":"GO:0015267"}],"gene_count":29,"genes_by_uniquename":{"SJAG_00048":null,"SJAG_00133":null,"SJAG_00438":null,"SJAG_00542":null,"SJAG_00836":null,"SJAG_00915":null,"SJAG_00985":null,"SJAG_01090":null,"SJAG_01168":null,"SJAG_02019":null,"SJAG_02105":null,"SJAG_02322":null,"SJAG_02532":null,"SJAG_02564":null,"SJAG_02598":null,"SJAG_02877":null,"SJAG_03114":null,"SJAG_03895":null,"SJAG_03925":null,"SJAG_04122":null,"SJAG_04471":null,"SJAG_04668":null,"SJAG_05204":null,"SJAG_05229":null,"SJAG_05342":null,"SJAG_07003":null,"SJAG_MIT09":null,"SJAG_MIT15":null,"SJAG_MIT37":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0003674","GO:0005215"],"is_obsolete":false,"name":"monoatomic ion channel activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"ion channel activity","type":"broad"}],"termid":"GO:0005216","terms_by_termid":{"GO:0005227":null,"GO:0005254":null,"GO:0005262":null,"GO:0008308":null,"GO:0008331":null,"GO:0008381":null,"GO:0015275":null,"GO:0046933":null,"GO:0140135":null}}


id: GO:0010019
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a molecular signal is transduced between the chloroplast and nucleus, such that expression of nuclear encoding photosynthetic proteins is coupled with chloroplast biogenesis.","definition_xrefs":["PMID:8972595"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular signal transduction","termid":"GO:0035556"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"chloroplast-nucleus signaling pathway","synonyms":[{"name":"chloroplast-nucleus signalling pathway","type":"exact"}],"termid":"GO:0010019"}


id: PBO:0040702
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCL2 like 2","termid":"PBO:0040702"}


id: PBO:0086673
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; identified by fungal homology comparisons and RT-PCR; partially overlaps RND5-5; YLR159C-A has a paralog, YLR156C-A, that arose from a segmental duplication","termid":"PBO:0086673"}


id: PBO:0005826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyradoxal family membrane transporter (predicted)","termid":"PBO:0005826"}


id: PBO:0039501
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat domain 24","termid":"PBO:0039501"}


id: MONDO:0009936
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Primary pulmonary hypoplasia is a rare, isolated, genetic developmental defect during embryogenesis characterized by congential malformation of pulmonary parenchyma with absence of other anomalies. Neonatally patients present with decreased breath sounds, small lung volume and severe respiratory distress that is not responsive to aggressive treatment (including surfactant instillation/ mechanical respiratory support). It is usually not compatible with life.","definition_xrefs":["Orphanet:2257"],"direct_ancestors":[{"relation_name":"is_a","term_name":"respiratory system disorder","termid":"MONDO:0005087"},{"relation_name":"is_a","term_name":"disorder of development or morphogenesis","termid":"MONDO:0021147"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"familial primary pulmonary hypoplasia","secondary_identifiers":["UMLS:C0456891","MEDGEN:141589","SCTID:277656005","OMIM:265430","GARD:16591","ICD9:748.5","icd11.foundation:1778475393"],"synonyms":[{"name":"lung agenesis","type":"related"},{"name":"primary pulmonary hypoplasia","type":"related"},{"name":"pulmonary hypoplasia, primary","type":"related"}],"termid":"MONDO:0009936","xrefs":{"Monarch":{"xref_id":"0009936"}}}


id: PATO:0000271
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000271 prepulse inhibition (obsolete PATO:0000271)","termid":"PATO:0000271"}


id: PBO:0087009
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribonuclease H1; able to bind double-stranded RNAs and RNA-DNA hybrids; associates with RNAse polymerase I.","termid":"PBO:0087009"}


id: GO:0008911
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-lactaldehyde + NAD+ + H2O = (S)-lactate + NADH + H+.","definition_xrefs":["RHEA:14277"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde dehydrogenase (NAD+) activity","termid":"GO:0004029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016491"],"is_obsolete":false,"name":"lactaldehyde dehydrogenase (NAD+) activity","secondary_identifiers":["MetaCyc:LACTALDDEHYDROG-RXN","EC:1.2.1.22"],"synonyms":[{"name":"(S)-lactaldehyde:NAD+ oxidoreductase activity","type":"related"},{"name":"L-lactaldehyde:NAD oxidoreductase activity","type":"related"},{"name":"nicotinamide adenine dinucleotide (NAD)-linked dehydrogenase activity","type":"related"}],"termid":"GO:0008911"}


id: GO:0014028
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of the notochord from the chordamesoderm. The notochord is composed of large cells packed within a firm connective tissue sheath and is found in all chordates at the ventral surface of the neural tube. In vertebrates, the notochord contributes to the vertebral column.","definition_xrefs":["GOC:ef","GOC:dh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"nervous system development","termid":"GO:0007399"},{"relation_name":"part_of","term_name":"notochord morphogenesis","termid":"GO:0048570"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"notochord formation","termid":"GO:0014028"}


id: PBO:0018034
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NMS complex subunit Ndc80","termid":"PBO:0018034"}


id: FYPO:0006923
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype in which the frequency of DNA recombination is normal (i.e. indistinguishable from wild type) at DNA replication fork barriers.","definition_xrefs":["PMID:31149897","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular process during vegetative growth","termid":"FYPO:0001319"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001312","FYPO:0000257","FYPO:0000002"],"is_obsolete":false,"name":"normal DNA recombination frequency at mitotic DNA replication fork barriers","synonyms":[{"name":"normal DNA recombination frequency at mitotic DNA replication fork barriers during mitotic cell cycle","type":"related"},{"name":"normal DNA recombination frequency at mitotic DNA replication fork barriers during vegetative growth","type":"exact"}],"termid":"FYPO:0006923"}


id: PBO:0030444
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_mitotic_G1/S_phase_transition","termid":"PBO:0030444"}


id: MONDO:0012512
data:
  {"annotated_genes":["SJAG_05271"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87787],"is_not":false,"summary":null,"term":"MONDO:0012512"}]},"cv_name":"mondo","definition":"Combined oxidative phosphorylation deficiency type 3 is an extremely rare clinically heterogenous disorder described in about 5 patients to date. Clinical signs included hypotonia, lactic acidosis, and hepatic insufficiency, with progressive encephalomyopathy or hypertrophic cardiomyopathy.","definition_xrefs":["Orphanet:168566"],"direct_ancestors":[{"relation_name":"is_a","term_name":"combined oxidative phosphorylation deficiency","termid":"MONDO:0000732"}],"gene_count":1,"genes_by_uniquename":{"SJAG_05271":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004069"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004069"],"is_obsolete":false,"name":"fatal mitochondrial disease due to combined oxidative phosphorylation defect type 3","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C1864840","DOID:0111486","GARD:17035","OMIM:610505","MEDGEN:355842","MESH:C566467","SCTID:720951008"],"synonyms":[{"name":"COXPD3","type":"related"},{"name":"TSFM combined oxidative phosphorylation deficiency","type":"exact"},{"name":"combined oxidative phosphorylation deficiency 3","type":"related"},{"name":"combined oxidative phosphorylation deficiency caused by mutation in TSFM","type":"exact"},{"name":"combined oxidative phosphorylation deficiency type 3","type":"exact"},{"name":"concentric cardiomyopathy, hypotonia, and lactic acidosis","type":"related"},{"name":"encephalomyopathy, respiratory failure, and lactic acidosis","type":"related"},{"name":"fatal mitochondrial disease due to COXPD3","type":"exact"}],"termid":"MONDO:0012512","terms_by_termid":{"MONDO:0012512":null},"xrefs":{"Monarch":{"xref_id":"0012512"}}}


id: GO:0110054
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of actin filament annealing, i.e. the end-to-end joining of existing actin filaments.","definition_xrefs":["PMID:11575927","GOC:mah","PMID:15743909","PMID:19244341","PMID:10585915"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of actin filament organization","termid":"GO:0110053"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007010"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0030036"}],"interesting_parent_ids":["GO:0008150","GO:0030036","GO:0007010"],"is_obsolete":false,"name":"regulation of actin filament annealing","termid":"GO:0110054"}


id: SO:0000928
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An edit to insert a AA dinucleotide.","definition_xrefs":["SO:ke"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000928 insert_AA (obsolete SO:0000928)","synonyms":[{"name":"insert AA","type":"exact"}],"termid":"SO:0000928"}


id: MONDO:0011675
data:
  {"annotated_genes":["SJAG_00858"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[89058],"is_not":false,"summary":null,"term":"MONDO:0011675"}]},"cv_name":"mondo","definition":"Autosomal dominant intermediate Charcot-Marie-Tooth disease type A is a rare hereditary motor and sensory neuropathy characterized by intermediate motor median nerve conduction velocities (usually between 25 and 45 m/s) and signs of both demyelination and axonal degeneration in nerve biopsies. It presents with usual clinical features of Charcot-Marie-Tooth disease (progressive muscle weakness and atrophy of the distal extremities, distal sensory loss, reduced or absent deep tendon reflexes, and feet deformities) in the first to second decade of life with steady progression until the fourth decade, severe progression and stabilization afterwards.","definition_xrefs":["Orphanet:100043"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal dominant intermediate Charcot-Marie-Tooth disease","termid":"MONDO:0019548"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00858":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244","MONDO:0000426"],"is_obsolete":false,"name":"Charcot-Marie-Tooth Disease, axonal, type 2GG","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5561933","MESH:C564702","GARD:12437","MEDGEN:1794143","OMIM:606483","DOID:0110202","SCTID:765744006"],"synonyms":[{"name":"CMT2GG","type":"exact"},{"name":"CMTDIA","type":"exact"},{"name":"Charcot-Marie-Tooth disease dominant intermediate A","type":"exact"},{"name":"Charcot-Marie-Tooth disease dominant intermediate type A","type":"exact"},{"name":"Charcot-Marie-Tooth disease, dominant intermediate A","type":"related"},{"name":"Charcot-Marie-Tooth neuropathy dominant intermediate A","type":"exact"},{"name":"Charcot-Marie-Tooth neuropathy, dominant Intermediate a","type":"related"},{"name":"DI-CMTA","type":"exact"},{"name":"Di-Cmta","type":"related"},{"name":"autosomal dominant intermediate Charcot-Marie-Tooth disease type A","type":"exact"}],"termid":"MONDO:0011675","terms_by_termid":{"MONDO:0011675":null},"xrefs":{"Monarch":{"xref_id":"0011675"}}}


id: PBO:0044800
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defensin beta 4A","termid":"PBO:0044800"}


id: PBO:0005755
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"19S proteasome regulatory subunit Rpt3 (predicted)","termid":"PBO:0005755"}


id: PBO:0071782
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein lateral stalk subunit P0 pseudogene 10","termid":"PBO:0071782"}


id: GO:0031237
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of a plasma membrane consisting of gene products and protein complexes that penetrate the periplasmic side of the plasma membrane only, either directly or via some covalently attached hydrophobic anchor.","definition_xrefs":["GOC:mtg_sensu","GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete intrinsic component of periplasmic side of plasma membrane (obsolete GO:0031237)","synonyms":[{"name":"intrinsic to external leaflet of plasma membrane, in periplasmic space","type":"exact"},{"name":"intrinsic to periplasmic side of plasma membrane","type":"exact"}],"termid":"GO:0031237"}


id: PBO:0066917
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 219","termid":"PBO:0066917"}


id: PBO:0080940
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zonadhesin","termid":"PBO:0080940"}


id: MONDO:1010060
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pheochromocytoma that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neoplasm, non-human animal","termid":"MONDO:0700098"},{"relation_name":"is_a","term_name":"endocrine system disorder, non-human animal","termid":"MONDO:1011317"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pheochromocytoma, non-human animal","secondary_identifiers":["OMIA:001268"],"termid":"MONDO:1010060","xrefs":{"Monarch":{"xref_id":"1010060"}}}


id: MONDO:0001012
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete breast fibroadenosis (obsolete MONDO:0001012)","secondary_identifiers":["ICD9:610.2","ICD10CM:N60.2","DOID:10352","SCTID:23260002"],"synonyms":[{"name":"fibroadenosis - breast","type":"exact"},{"name":"fibroadenosis of breast","type":"exact"}],"termid":"MONDO:0001012","xrefs":{"Monarch":{"xref_id":"0001012"}}}


id: GO:0033620
data:
  {"annotated_genes":["SJAG_04601","SJAG_03747","SJAG_04022","SJAG_02037","SJAG_00448","SJAG_02720","SJAG_03939","SJAG_00285","SJAG_04768","SJAG_04942","SJAG_02622","SJAG_01412","SJAG_00145"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[89290,94663,97015,97367,99420,100008,100964,106200,111165,111766,113256,114721,120107],"is_not":false,"summary":null,"term":"GO:0033620"}]},"cv_name":"cellular_component","definition":"A ribonucleoprotein complex that forms during meiotic prophase in a fixed position in the horsetail nucleus; contains Mei2 and meiRNA. May play a role in the progression of meiosis I.","definition_xrefs":["GOC:vw","PMID:12808043"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"},{"relation_name":"is_a","term_name":"ribonucleoprotein complex","termid":"GO:1990904"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00145":null,"SJAG_00285":null,"SJAG_00448":null,"SJAG_01412":null,"SJAG_02037":null,"SJAG_02622":null,"SJAG_02720":null,"SJAG_03747":null,"SJAG_03939":null,"SJAG_04022":null,"SJAG_04601":null,"SJAG_04768":null,"SJAG_04942":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005575","GO:0005634","GO:0032991"],"is_obsolete":false,"name":"Mei2 nuclear dot complex","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"Mei2 dot","type":"exact"},{"name":"Mei2 nuclear dot","type":"broad"},{"name":"nuclear body","type":"related"}],"termid":"GO:0033620","terms_by_termid":{"GO:0033620":null}}


id: SO:0000632
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A primary transcript encoding for one gene product.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"has_quality","term_name":"monocistronic","termid":"SO:0000878"},{"relation_name":"is_a","term_name":"primary_transcript","termid":"SO:0000185"},{"relation_name":"is_a","term_name":"monocistronic_transcript","termid":"SO:0000665"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"monocistronic_primary_transcript","synonyms":[{"name":"monocistronic primary transcript","type":"exact"}],"termid":"SO:0000632"}


id: PBO:0072472
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein SA pseudogene 1","termid":"PBO:0072472"}


id: PBO:0047237
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 230 member I","termid":"PBO:0047237"}


id: GO:0006266
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The re-formation of a broken phosphodiester bond in the DNA backbone, carried out by DNA ligase.","definition_xrefs":["ISBN:0815316194"],"gene_count":0,"genotype_count":0,"name":"obsolete DNA ligation (obsolete GO:0006266)","termid":"GO:0006266"}


id: PBO:0088648
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA recombination mediator, RecA family ATPase Rad57/Rhp57","termid":"PBO:0088648"}


id: FYPO:0007822
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype in which vacuoles are larger than normal in G0 phase.","definition_xrefs":["PomBase:mah","PMID:34147496"],"direct_ancestors":[{"relation_name":"is_a","term_name":"large vacuoles","termid":"FYPO:0007821"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"large vacuoles during G0","synonyms":[{"name":"enlarged vacuoles during G0","type":"exact"},{"name":"large vacuoles during cell quiescence","type":"exact"},{"name":"large vacuoles during quiescence","type":"exact"}],"termid":"FYPO:0007822"}


id: PBO:0054528
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1928","termid":"PBO:0054528"}


id: CHEBI:29036
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"copper(2+)","termid":"CHEBI:29036"}


id: PBO:0062039
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily T member 8","termid":"PBO:0062039"}


id: GO:0052540
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process by which an organism activates, maintains or increases the frequency, rate or extent of symbiont processes resulting in the thickening of its cell walls, occurring as part of the defense response of the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation by organism of defense-related symbiont cell wall thickening (obsolete GO:0052540)","synonyms":[{"name":"positive regulation by organism of defense-related symbiont cell wall thickening","type":"exact"},{"name":"positive regulation by organism of symbiont defensive cell wall thickening","type":"exact"}],"termid":"GO:0052540"}


id: PBO:0072208
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S18 pseudogene 7","termid":"PBO:0072208"}


id: MONDO:0011441
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Complex regional pain syndrome type 1 (CRPS1) is a form of complex regional pain syndrome in which the pain is disproportionate to any known inciting event and is characterized by continuous pain, allodynia, or hyperalgesia as well as edema, coloration (changes in skin blood flow), or abnormal sudomotor activity in the region of pain. Onset of CRPS1 symptoms may occur within a few days to a month after an injury or trauma to the affected limb.","definition_xrefs":["Orphanet:99995"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"complex regional pain syndrome","termid":"MONDO:0019369"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"complex regional pain syndrome type 1","secondary_identifiers":["EFO:1001147","ICD9:337.29","ICD9:337.2","MedDRA:10038249","DOID:1811","MedDRA:10064334","OMIM:604335","ICD9:337.21","ICD10CM:M89.0","UMLS:C0034931","NCIT:C85042","MESH:D012019","ICD9:337.20","GARD:16928","MEDGEN:11159","SCTID:50642008","ICD9:733.7"],"synonyms":[{"name":"Algodystrophy","type":"exact"},{"name":"CRPS I","type":"exact"},{"name":"CRPS1","type":"exact"},{"name":"Complex regional pain syndrome I","type":"exact"},{"name":"RND","type":"exact"},{"name":"RSDS","type":"exact"},{"name":"complex regional pain syndrome type 1","type":"exact"},{"name":"reflex neurovascular dystrophy","type":"exact"},{"name":"reflex sympathetic dystrophy","type":"exact"},{"name":"reflex sympathetic dystrophy syndrome","type":"exact"}],"termid":"MONDO:0011441","xrefs":{"Monarch":{"xref_id":"0011441"}}}


id: PR:Q10300
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC22H10.06c gene.","definition_xrefs":["UniProtKB:Q10300","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C22H10.06c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22H10.06c","synonyms":[{"name":"Spom972h-SPAC22H10.06c","type":"exact"}],"termid":"PR:Q10300"}


id: MONDO:0004198
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A yolk sac tumor that arises from the testis and is characterized by the presence of aggregates of polygonal malignant cells with clear cytoplasm and prominent nucleoli.","definition_xrefs":["NCIT:C39925"],"direct_ancestors":[{"relation_name":"is_a","term_name":"testicular yolk sac tumor","termid":"MONDO:0003402"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"testicular yolk sac tumor, solid pattern","secondary_identifiers":["UMLS:C1515312","DOID:7360","MEDGEN:308263"],"synonyms":[{"name":"solid pattern testicular yolk sac tumor","type":"related"},{"name":"solid pattern testicular yolk sac tumour","type":"related"},{"name":"testicular yolk sac tumor, solid pattern","type":"exact"}],"termid":"MONDO:0004198","xrefs":{"Monarch":{"xref_id":"0004198"}}}


id: GO:0106216
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of vesicle fusion with Golgi apparatus.","definition_xrefs":["GOC:se","PMID:26195667"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of vesicle fusion","termid":"GO:0031340"},{"relation_name":"is_a","term_name":"regulation of vesicle fusion with Golgi apparatus","termid":"GO:0106214"},{"relation_name":"positively_regulates","term_name":"vesicle fusion with Golgi apparatus","termid":"GO:0048280"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0061024"},{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0016192","GO:0061024","GO:0008150"],"is_obsolete":false,"name":"positive regulation of vesicle fusion with Golgi apparatus","termid":"GO:0106216"}


id: GO:0060078
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the potential difference across a post-synaptic membrane.","definition_xrefs":["GOC:ef","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of membrane potential","termid":"GO:0042391"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of postsynaptic membrane potential","synonyms":[{"name":"regulation of post-synaptic membrane potential","type":"exact"}],"termid":"GO:0060078"}


id: GO:0042011
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to interleukin-16.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine binding","termid":"GO:0019955"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005515","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"interleukin-16 binding","synonyms":[{"name":"IL-16 binding","type":"exact"}],"termid":"GO:0042011"}


id: PBO:0049930
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hedgehog acyltransferase like","termid":"PBO:0049930"}


id: MONDO:0017020
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete secondary interstitial lung disease specific to childhood associated with a systemic disease (obsolete MONDO:0017020)","secondary_identifiers":["Orphanet:264699"],"synonyms":[{"name":"secondary ILD specific to childhood associated with a systemic disease","type":"exact"}],"termid":"MONDO:0017020","xrefs":{"Monarch":{"xref_id":"0017020"}}}


id: GO:0033993
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipid stimulus.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to chemical","termid":"GO:0042221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to lipid","termid":"GO:0033993"}


id: PBO:0067326
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 417, pseudogene","termid":"PBO:0067326"}


id: MONDO:0010993
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Harrod syndrome is characterized by the association of intellectual deficit, facial dysmorphism (a highly arched palate, pointed chin, and small mouth, hypotelorism, a long nose and large protruding ears), arachnodactyly, hypogenitalism (undescended testes and hypospadias) and failure to thrive.","definition_xrefs":["Orphanet:2115"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Harrod syndrome","secondary_identifiers":["MEDGEN:162895","GARD:2601","OMIM:601095","UMLS:C0795970","MESH:C535635","SCTID:716089008"],"synonyms":[{"name":"Harrod Doman Keele syndrome","type":"related"},{"name":"Harrod syndrome","type":"exact"},{"name":"cranio-facio-digito-genital syndrome","type":"exact"},{"name":"craniofacial digital genital anomalies","type":"related"}],"termid":"MONDO:0010993","xrefs":{"Monarch":{"xref_id":"0010993"}}}


id: GO:1990502
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Steps required to transform a dense core granule generated at the trans-Golgi network into a fully formed and transmissible dense core granule. Dense core granule maturation proceeds through clathrin-mediated membrane remodeling events and is essential for efficient processing of cargo within dense core granules as well as for removing factors that might otherwise interfere with dense core granule trafficking and exocytosis.","definition_xrefs":["PMID:22654674","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"secretory granule maturation","termid":"GO:0061792"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dense core granule maturation","synonyms":[{"name":"dense core vesicle maturation","type":"exact"}],"termid":"GO:1990502"}


id: PBO:0081015
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger and BTB domain containing 47","termid":"PBO:0081015"}


id: PBO:0080718
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat and SOCS box containing 2","termid":"PBO:0080718"}


id: PBO:0090069
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell wall beta-glucosidase Psu1","termid":"PBO:0090069"}


id: GO:0036186
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding an early phagosome.","definition_xrefs":["GOC:phg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phagocytic vesicle membrane","termid":"GO:0030670"},{"relation_name":"part_of","term_name":"early phagosome","termid":"GO:0032009"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0031410"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0031410"],"is_obsolete":false,"name":"early phagosome membrane","synonyms":[{"name":"early phagocytic vesicle membrane","type":"exact"}],"termid":"GO:0036186"}


id: PBO:0057886
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3190","termid":"PBO:0057886"}


id: PBO:0064460
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA polymerase alpha 1, catalytic subunit","termid":"PBO:0064460"}


id: PBO:0075824
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signal sequence receptor subunit 1","termid":"PBO:0075824"}


id: MONDO:1011249
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Retinoschisis that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinoschisis, non-human animal","termid":"MONDO:1010328"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retinoschisis, dog","secondary_identifiers":["OMIA:001185-9615"],"termid":"MONDO:1011249","xrefs":{"Monarch":{"xref_id":"1011249"}}}


id: PR:O13685
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A ubiquitin-conjugating enzyme E2 N that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR24067:SF30","OMA:SCHPO02194","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin-conjugating enzyme E2 13 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC11E3.04c","secondary_identifiers":["UniProtKB:O13685"],"synonyms":[{"name":"E2 ubiquitin-conjugating enzyme 13 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-UBE2N","type":"exact"},{"name":"ubiquitin carrier protein 13 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ubiquitin-protein ligase 13 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13685"}


id: PBO:0066617
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rhophilin Rho GTPase binding protein 2","termid":"PBO:0066617"}


id: PBO:0029887
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_stress_granule_assembly","termid":"PBO:0029887"}


id: GO:0071866
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the occurrence or rate of cell death by apoptotic process in the bone marrow.","definition_xrefs":["GOC:yaf","GOC:mah","PMID:17063141","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of apoptotic process","termid":"GO:0043066"},{"relation_name":"is_a","term_name":"regulation of apoptotic process in bone marrow cell","termid":"GO:0071865"},{"relation_name":"negatively_regulates","term_name":"apoptotic process in bone marrow cell","termid":"GO:0071839"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of apoptotic process in bone marrow cell","synonyms":[{"name":"down regulation of apoptosis in bone marrow","type":"exact"},{"name":"down-regulation of apoptosis in bone marrow","type":"exact"},{"name":"downregulation of apoptosis in bone marrow","type":"exact"},{"name":"inhibition of apoptosis in bone marrow","type":"narrow"},{"name":"negative regulation of apoptosis in bone marrow","type":"narrow"},{"name":"negative regulation of apoptotic process in bone marrow","type":"exact"},{"name":"negative regulation of bone marrow cell apoptosis","type":"exact"},{"name":"negative regulation of bone marrow cell programmed cell death by apoptosis","type":"exact"},{"name":"negative regulation of killing of bone marrow cells","type":"exact"},{"name":"negative regulation of programmed cell death of bone marrow cells by apoptosis","type":"exact"},{"name":"negative regulation of programmed cell death, bone marrow cells","type":"exact"}],"termid":"GO:0071866"}


id: GO:0019759
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of glycosinolates, substituted thioglycosides found in rapeseed products and related cruciferae.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete glycosinolate catabolic process (obsolete GO:0019759)","synonyms":[{"name":"glycosinolate breakdown","type":"exact"},{"name":"glycosinolate catabolism","type":"exact"},{"name":"glycosinolate degradation","type":"exact"}],"termid":"GO:0019759"}


id: PBO:0080764
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"X-linked inhibitor of apoptosis pseudogene 3","termid":"PBO:0080764"}


id: GO:1904839
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of male germ-line stem cell asymmetric division.","definition_xrefs":["PMID:19339709","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell development","termid":"GO:0010721"},{"relation_name":"is_a","term_name":"negative regulation of asymmetric cell division","termid":"GO:0045769"},{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"is_a","term_name":"regulation of male germ-line stem cell asymmetric division","termid":"GO:1904838"},{"relation_name":"negatively_regulates","term_name":"male germ-line stem cell asymmetric division","termid":"GO:0048133"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of male germ-line stem cell asymmetric division","synonyms":[{"name":"down regulation of male germ-line stem cell asymmetric division","type":"exact"},{"name":"down regulation of male germ-line stem cell renewal","type":"exact"},{"name":"down-regulation of male germ-line stem cell asymmetric division","type":"exact"},{"name":"down-regulation of male germ-line stem cell renewal","type":"exact"},{"name":"downregulation of male germ-line stem cell asymmetric division","type":"exact"},{"name":"downregulation of male germ-line stem cell renewal","type":"exact"},{"name":"inhibition of male germ-line stem cell asymmetric division","type":"narrow"},{"name":"inhibition of male germ-line stem cell renewal","type":"narrow"},{"name":"negative regulation of male germ-line stem cell renewal","type":"exact"}],"termid":"GO:1904839"}


id: PBO:0056133
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lysozyme like 2","termid":"PBO:0056133"}


id: PBO:0083463
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; partially overlaps the verified gene LCB4","termid":"PBO:0083463"}


id: MONDO:0001721
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"urethral disorder","termid":"MONDO:0004184"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"urethral intrinsic sphincter deficiency","secondary_identifiers":["MEDGEN:843584","UMLS:C0375381","ICD9:599.82","DOID:13461"],"synonyms":[{"name":"intrinsic (urethral) sphincter deficiency [ISD]","type":"exact"}],"termid":"MONDO:0001721","xrefs":{"Monarch":{"xref_id":"0001721"}}}


id: GO:0106262
data:
  {"annotated_genes":["SJAG_04792"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[105883],"is_not":false,"summary":null,"term":"GO:0106262"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a 1-acyl-sn-glycero-3-phosphoethanolamine + an acyl-CoA = a 1,2-diacyl-sn-glycero-3-phosphoethanolamine + CoA.","definition_xrefs":["PMID:18287005","RHEA:32995"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acyltransferase activity","termid":"GO:0008374"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04792":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016746","GO:0016740","GO:0003824"],"is_obsolete":false,"name":"1-acylglycerophosphoethanolamine O-acyltransferase activity","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["EC:2.3.1.n7"],"termid":"GO:0106262","terms_by_termid":{"GO:0106262":null}}


id: RO:0002106
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"A relation between a motor neuron and a muscle that it synapses to via a type Is bouton.","direct_ancestors":[{"relation_name":"is_a","term_name":"synapsed_to","termid":"RO:0002120"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"synapsed_via_type_Is_bouton_to","termid":"RO:0002106"}


id: FYECO:0000384
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which cells are grown in a culture, and isogenic cells of the opposite mating type are added to the culture.","definition_xrefs":["PomBase:sm","PomBase:mah","PMID:30279276"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping experimental environment","termid":"FYECO:0000132"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"isogenic cells of opposite mating type added to culture","synonyms":[{"name":"self mating","type":"related"}],"termid":"FYECO:0000384"}


id: PBO:0080101
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UTP11 small subunit processome component","termid":"PBO:0080101"}


id: GO:0051906
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process in which a pigment granule is maintained in a location and prevented from moving elsewhere.","definition_xrefs":["GOC:ai","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"maintenance of vesicle location","termid":"GO:0051655"},{"relation_name":"part_of","term_name":"pigment granule localization","termid":"GO:0051875"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179"],"is_obsolete":false,"name":"maintenance of pigment granule location","synonyms":[{"name":"maintenance of pigment granule localization","type":"related"}],"termid":"GO:0051906"}


id: MONDO:0022913
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete cutler bass Romshe syndrome (obsolete MONDO:0022913)","termid":"MONDO:0022913","xrefs":{"Monarch":{"xref_id":"0022913"}}}


id: PBO:0058082
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 4300","termid":"PBO:0058082"}


id: PBO:0054673
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2079","termid":"PBO:0054673"}


id: MONDO:0017027
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete primary interstitial lung disease specific to adulthood (obsolete MONDO:0017027)","secondary_identifiers":["Orphanet:264740"],"synonyms":[{"name":"primary ILD specific to adulthood","type":"exact"}],"termid":"MONDO:0017027","xrefs":{"Monarch":{"xref_id":"0017027"}}}


id: GO:0005297
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: proline(out) + H+(out) = proline(in) + H+(in).","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid:proton symporter activity","termid":"GO:0005280"},{"relation_name":"is_a","term_name":"carboxylic acid transmembrane transporter activity","termid":"GO:0046943"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"proline:proton symporter activity","synonyms":[{"name":"hydrogen/proline transporter","type":"broad"}],"termid":"GO:0005297"}


id: PR:P87294
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sub1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P87294"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase II transcriptional coactivator (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC16A10.02","synonyms":[{"name":"Spom972h-sub1","type":"exact"}],"termid":"PR:P87294"}


id: GO:0052136
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of a motile cell or organism towards a lower concentration of a specific chemical on or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete negative chemotaxis on or near host (obsolete GO:0052136)","termid":"GO:0052136"}


id: GO:0009941
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The double lipid bilayer enclosing the chloroplast and separating its contents from the rest of the cytoplasm; includes the intermembrane space.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plastid envelope","termid":"GO:0009526"},{"relation_name":"part_of","term_name":"chloroplast","termid":"GO:0009507"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"chloroplast envelope","termid":"GO:0009941"}


id: MONDO:0007301
data:
  {"annotated_genes":["SJAG_02279"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87318],"is_not":false,"summary":null,"term":"MONDO:0007301"}]},"cv_name":"mondo","definition":"Cerebro-costo-mandibular syndrome (CCMS) is characterized at birth by posterior rib gaps and orofacial anomalies reminiscent of Pierre Robin syndrome that include palatal defects (short hard palate, absent soft palate, absent uvula), micrognathia and glossoptosis.","definition_xrefs":["Orphanet:1393"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-variable intellectual disability syndrome","termid":"MONDO:0015160"},{"relation_name":"is_a","term_name":"skeletal dysplasia","termid":"MONDO:0018230"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02279":null},"genotype_count":0,"is_obsolete":false,"name":"cerebrocostomandibular syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["ICD9:759.89","GARD:6026","OMIM:117650","DOID:0111248","MEDGEN:120537","SCTID:51780007","UMLS:C0265342","icd11.foundation:1475063064","MESH:C562538"],"synonyms":[{"name":"CCM syndrome","type":"related"},{"name":"CCMS","type":"related"},{"name":"CEREBROCOSTOMANDIBULAR syndrome","type":"related"},{"name":"cerebro-costo-mandibular syndrome","type":"related"},{"name":"cerebrocostomandibular syndrome","type":"exact"},{"name":"rib Gap defects with micrognathia","type":"related"}],"termid":"MONDO:0007301","terms_by_termid":{"MONDO:0007301":null},"xrefs":{"Monarch":{"xref_id":"0007301"}}}


id: SO:0001870
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A short ncRNA that is transcribed from an enhancer. May have a regulatory function.","definition_xrefs":["SO:cjm","doi:10.1038/465173a"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ncRNA","termid":"SO:0000655"},{"relation_name":"transcribed_from","term_name":"enhancer","termid":"SO:0000165"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"enhancerRNA","synonyms":[{"name":"eRNA","type":"exact"}],"termid":"SO:0001870"}


id: PBO:0050458
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HOMER3 antisense RNA 1","termid":"PBO:0050458"}


id: GO:0042579
data:
  {"annotated_genes":["SJAG_05950","SJAG_00114","SJAG_03671","SJAG_03781","SJAG_04763","SJAG_04315","SJAG_02619","SJAG_02247","SJAG_04299","SJAG_01685","SJAG_04146","SJAG_02848","SJAG_00706","SJAG_02496","SJAG_01474","SJAG_04428","SJAG_03715","SJAG_03324","SJAG_03166","SJAG_01165","SJAG_03493","SJAG_00947","SJAG_00702","SJAG_00891","SJAG_02630","SJAG_04467","SJAG_00326","SJAG_02997","SJAG_02384","SJAG_03091","SJAG_02693","SJAG_04823","SJAG_03464","SJAG_03440"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[61519,116725,72392,120299,107224,117743,113809],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0005782"},{"annotations":[72418,77285,79534,108617,117280,120174,92252,82150,79906,81455,75071,77643,59269,98828,100445,117744,75464,73492,80281],"is_not":false,"rel_names":["is_a","part_of"],"summary":null,"term":"GO:0005778"},{"annotations":[71985,81591,76059,101725,74144,75373,115909,111566,73306,78051],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005777"}]},"cv_name":"cellular_component","definition":"Cytoplasmic organelles, spherical or oval in shape, that are bounded by a single membrane and contain oxidative enzymes, especially those utilizing hydrogen peroxide (H2O2).","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular membrane-bounded organelle","termid":"GO:0043231"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":34,"genes_by_uniquename":{"SJAG_00114":null,"SJAG_00326":null,"SJAG_00702":null,"SJAG_00706":null,"SJAG_00891":null,"SJAG_00947":null,"SJAG_01165":null,"SJAG_01474":null,"SJAG_01685":null,"SJAG_02247":null,"SJAG_02384":null,"SJAG_02496":null,"SJAG_02619":null,"SJAG_02630":null,"SJAG_02693":null,"SJAG_02848":null,"SJAG_02997":null,"SJAG_03091":null,"SJAG_03166":null,"SJAG_03324":null,"SJAG_03440":null,"SJAG_03464":null,"SJAG_03493":null,"SJAG_03671":null,"SJAG_03715":null,"SJAG_03781":null,"SJAG_04146":null,"SJAG_04299":null,"SJAG_04315":null,"SJAG_04428":null,"SJAG_04467":null,"SJAG_04763":null,"SJAG_04823":null,"SJAG_05950":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"microbody","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000044":null,"GO_REF:0000107":null},"secondary_identifiers":["Wikipedia:Microbody"],"termid":"GO:0042579","terms_by_termid":{"GO:0005777":null,"GO:0005778":null,"GO:0005782":null}}


id: MONDO:0012127
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autosomal recessive limb-girdle muscular dystrophy type 2J (LGMD2J) is a form of limb-girdle muscular dystrophy that usually has a childhood onset (but can range from the first to third decade of life) of severe progressive proximal weakness, eventually involving the distal muscles. Some patients may remain ambulatory but most are wheelchair dependant 20 years after onset.","definition_xrefs":["Orphanet:140922"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive limb-girdle muscular dystrophy","termid":"MONDO:0015152"},{"relation_name":"is_a","term_name":"autosomal recessive titinopathy","termid":"MONDO:0100493"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0005336","MONDO:0002320","MONDO:0006025"],"is_obsolete":false,"name":"autosomal recessive limb-girdle muscular dystrophy type 2J","secondary_identifiers":["OMIM:608807","MEDGEN:324741","UMLS:C1837342","DOID:0110283","MESH:C563854","GARD:12534"],"synonyms":[{"name":"LGMD2J","type":"exact"},{"name":"TTN autosomal recessive limb-girdle muscular dystrophy","type":"exact"},{"name":"autosomal recessive limb-girdle muscular dystrophy caused by mutation in TTN","type":"exact"},{"name":"limb-girdle muscular dystrophy type 2J","type":"related"},{"name":"muscular dystrophy, limb-girdle, autosomal recessive 10","type":"exact"},{"name":"muscular dystrophy, limb-girdle, type 2J","type":"exact"}],"termid":"MONDO:0012127","xrefs":{"Monarch":{"xref_id":"0012127"}}}


id: PBO:0047316
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FAT atypical cadherin 1","termid":"PBO:0047316"}


id: PBO:0061948
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily A member 1","termid":"PBO:0061948"}


id: GO:0045782
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cell budding.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell budding","termid":"GO:0007116"},{"relation_name":"is_a","term_name":"positive regulation of cell division","termid":"GO:0051781"},{"relation_name":"is_a","term_name":"positive regulation of asexual reproduction","termid":"GO:1903666"},{"relation_name":"positively_regulates","term_name":"cell budding","termid":"GO:0007114"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cell budding","synonyms":[{"name":"activation of cell budding","type":"narrow"},{"name":"positive regulation of budding","type":"broad"},{"name":"stimulation of cell budding","type":"narrow"},{"name":"up regulation of cell budding","type":"exact"},{"name":"up-regulation of cell budding","type":"exact"},{"name":"upregulation of cell budding","type":"exact"}],"termid":"GO:0045782"}


id: MONDO:0023227
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A form of diabetes insipidus that manifests during pregnancy (or in some cases, after pregnancy). It is characterized by theappearance of a polyuric-polydipsic syndrome that resultsin fluid intake ranging from 3 to 20 L/day. It is also charac-terized by excretion of abnormally high volumes of dilutedurine. This polyuria is insipid, i.e., the urine concentrationof dissolved substances is very low.","definition_xrefs":["PMID:20500966"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diabetes insipidus","termid":"MONDO:0004782"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005240"],"is_obsolete":false,"name":"gestational diabetes insipidus","secondary_identifiers":["MESH:C548014","UMLS:C2932666","MEDGEN:444359","DOID:0081057"],"synonyms":[{"name":"Gestagenic diabetes insipidus","type":"related"},{"name":"diabetes insipidus gestational","type":"related"}],"termid":"MONDO:0023227","xrefs":{"Monarch":{"xref_id":"0023227"}}}


id: GO:2000009
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of protein localization to the cell surface.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of protein localization","termid":"GO:1903828"},{"relation_name":"is_a","term_name":"regulation of protein localization to cell surface","termid":"GO:2000008"},{"relation_name":"negatively_regulates","term_name":"protein localization to cell surface","termid":"GO:0034394"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of protein localization to cell surface","synonyms":[{"name":"negative regulation of protein localisation at cell surface","type":"exact"},{"name":"negative regulation of protein localization at cell surface","type":"exact"}],"termid":"GO:2000009"}


id: PBO:0088775
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PAN complex (poly(A)-specific ribonuclease) ubiquitin C-terminal hydrolase subunit Pan2","termid":"PBO:0088775"}


id: PBO:0002118
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WD repeat protein Vps8 (predicted)","termid":"PBO:0002118"}


id: FYPO:0001132
data:
  {"alleles_by_uniquename":{"SJAG_01050:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_01050","name":"nur1delta","uniquename":"SJAG_01050:allele-1"},"SJAG_03892:allele-1":{"allele_type":"deletion","description":"deletion","gene_uniquename":"SJAG_03892","name":"vps4delta","uniquename":"SJAG_03892:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"multi_locus_phenotype":[{"annotations":[121290],"is_not":false,"summary":null,"term":"FYPO:0001132"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to heterochromatin is abolished.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to heterochromatin during vegetative growth","termid":"FYPO:0001131"},{"relation_name":"is_a","term_name":"abolished protein localization to chromatin during vegetative growth","termid":"FYPO:0001508"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01050":null,"SJAG_01745":null,"SJAG_03892":null},"genotype_count":1,"genotypes_by_uniquename":{"nur1delta__vps4delta":{"display_name":"nur1delta vps4delta","display_uniquename":"nur1delta__vps4delta","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_01050:allele-1","expression":"Null"}]},{"expressed_alleles":[{"allele_uniquename":"SJAG_03892:allele-1","expression":"Null"}]}]}},"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000138","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"multi_locus_annotated_genes":["SJAG_01050","SJAG_03892"],"name":"abolished protein localization to heterochromatin during vegetative growth","references_by_uniquename":{"PMID:32109380":null},"synonyms":[{"name":"abolished protein localisation to heterochromatin during vegetative growth","type":"exact"},{"name":"abolished protein localization to heterochromatin during mitotic cell cycle","type":"related"},{"name":"protein localization to heterochromatin abolished during vegetative growth","type":"exact"}],"termid":"FYPO:0001132","terms_by_termid":{"FYPO:0001132":null,"FYPO_EXT:0000001":null}}


id: PATO:0001001
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0001001 absolute alternation (obsolete PATO:0001001)","termid":"PATO:0001001"}


id: FYPO:0002874
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the medial cortex begins earlier than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to medial cortex during vegetative growth","termid":"FYPO:0000731"},{"relation_name":"is_a","term_name":"premature protein localization to cell division site","termid":"FYPO:0007829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000138","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"premature protein localization to medial cortex during vegetative growth","synonyms":[{"name":"advanced protein localization to medial cortex during vegetative growth","type":"exact"},{"name":"faster protein localization to medial cortex during vegetative growth","type":"related"},{"name":"premature protein localisation to medial cortex during vegetative growth","type":"exact"},{"name":"premature protein localization to medial cortex during mitotic cell cycle","type":"related"},{"name":"premature protein localization to medial ring during vegetative growth","type":"exact"}],"termid":"FYPO:0002874"}


id: PBO:0057872
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3180-1","termid":"PBO:0057872"}


id: MONDO:0032014
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A set of phenotypic abnormalities presenting in a subset of patients under particular circumstances.","definition_xrefs":["Orphanet:377793"],"gene_count":0,"genotype_count":0,"name":"obsolete particular clinical situation in a disease or syndrome (obsolete MONDO:0032014)","termid":"MONDO:0032014","xrefs":{"Monarch":{"xref_id":"0032014"}}}


id: GO:1904185
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form an equatorial microtubule organizing center.","definition_xrefs":["GOC:TermGenie","PMID:15004232","GO_REF:0000079"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component assembly","termid":"GO:0022607"},{"relation_name":"is_a","term_name":"microtubule organizing center organization","termid":"GO:0031023"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0000226"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007010"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085","GO:0000226","GO:0007010"],"is_obsolete":false,"name":"equatorial microtubule organizing center assembly","synonyms":[{"name":"EMTOC assembly","type":"exact"},{"name":"EMTOC formation","type":"exact"},{"name":"equatorial microtubule organising centre assembly","type":"exact"},{"name":"equatorial microtubule organising centre formation","type":"exact"},{"name":"equatorial microtubule organizing center formation","type":"exact"}],"termid":"GO:1904185"}


id: MONDO:0036779
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign or malignant neoplasm that affects the structures of the axilla. Representative examples include axillary lipoma, axillary lymph node lymphoma, and metastatic carcinoma to the axillary lymph nodes.","definition_xrefs":["NCIT:C35749"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neoplasm of thorax","termid":"MONDO:0021350"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"axillary neoplasm","secondary_identifiers":["MEDGEN:266214","UMLS:C1290308","SCTID:126639006"],"synonyms":[{"name":"axilla neoplasm","type":"exact"},{"name":"axilla tumor","type":"exact"},{"name":"axilla tumour","type":"exact"},{"name":"axillary neoplasm","type":"exact"},{"name":"neoplasm of axilla","type":"exact"},{"name":"tumor of axilla","type":"exact"},{"name":"tumour of axilla","type":"exact"}],"termid":"MONDO:0036779","xrefs":{"Monarch":{"xref_id":"0036779"}}}


id: PBO:0056322
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAP3K5 antisense RNA 2","termid":"PBO:0056322"}


id: GO:0022403
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"One of the distinct periods or stages into which the cell cycle is divided. Each phase is characterized by the occurrence of specific biochemical and morphological events.","definition_xrefs":["GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"biological phase","termid":"GO:0044848"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cell cycle phase","termid":"GO:0022403"}


id: PBO:0111899
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GRIP domain","termid":"PBO:0111899"}


id: GO:0015324
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Enables the transfer of peptide-acetyl-CoA from one side of a membrane to the other, up its concentration gradient. The transporter binds the solute and undergoes a series of conformational changes. Transport works equally well in either direction and is driven by a chemiosmotic source of energy. Secondary active transporters include symporters and antiporters.","definition_xrefs":["GOC:mtg_transport"],"gene_count":0,"genotype_count":0,"name":"obsolete peptide-acetyl-CoA secondary active transmembrane transporter activity (obsolete GO:0015324)","synonyms":[{"name":"peptide-acetyl-CoA transporter activity","type":"related"}],"termid":"GO:0015324"}


id: PBO:0027258
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_localization_to_chromatin_at_tRNA_genes","termid":"PBO:0027258"}


id: PBO:0013007
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"is not functionally complemented by S. cerevisiae RAD5","termid":"PBO:0013007"}


id: PBO:0059935
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND2 pseudogene 21","termid":"PBO:0059935"}


id: GO:0039655
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The transport of a virus between adjacent cells in a multicellular organism using plasmodesmata. Plasmodesma is a fine cytoplasmic channel found in all higher plants, which connects the cytoplasm of one cell to that of an adjacent cell.","definition_xrefs":["UniProtKB-KW:KW-0916","VZ:1018"],"gene_count":0,"genotype_count":0,"name":"obsolete transport of virus in host, cell to cell via plasmodesmata (obsolete GO:0039655)","synonyms":[{"name":"spread of virus in host, cell to cell via plasmodesmata","type":"related"},{"name":"viral movement protein","type":"related"}],"termid":"GO:0039655"}


id: PBO:0062100
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily A member 50 pseudogene","termid":"PBO:0062100"}


id: GO:0003333
data:
  {"annotated_genes":["SJAG_00522","SJAG_00543","SJAG_05346","SJAG_02946","SJAG_02605","SJAG_00991","SJAG_05342","SJAG_00877","SJAG_04295","SJAG_03400","SJAG_02716","SJAG_03970","SJAG_04725","SJAG_02062","SJAG_02941","SJAG_02150","SJAG_01770","SJAG_02955","SJAG_00015","SJAG_04135","SJAG_01636","SJAG_04715","SJAG_01336","SJAG_01096","SJAG_02113","SJAG_04984","SJAG_02947","SJAG_04637","SJAG_03256","SJAG_03591","SJAG_04588","SJAG_04718","SJAG_00626","SJAG_03827","SJAG_04903","SJAG_04296","SJAG_04787","SJAG_01994","SJAG_00051","SJAG_01998","SJAG_03899","SJAG_00149","SJAG_04957","SJAG_02133","SJAG_03829","SJAG_00019","SJAG_01923","SJAG_02029","SJAG_06598","SJAG_04983"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[74944,77238,77271,78071,78580,78727,79388,79546,80474,81708,81968,82204,91529,97560,101909,105427,120252,120253,120254,120255,120256,120257,120258,120259],"is_not":false,"summary":null,"term":"GO:0003333"},{"annotations":[78838],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0032974"},{"annotations":[111977,104701],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990591"},{"annotations":[92220],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034488"},{"annotations":[96447],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034490"},{"annotations":[105925,105926,105928,99211,105927],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990822"},{"annotations":[64602],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903712"},{"annotations":[71808,100098],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1904983"},{"annotations":[111978,104702],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903714"},{"annotations":[97887],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902475"},{"annotations":[102246],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097638"},{"annotations":[99225],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990818"},{"annotations":[105733],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090518"},{"annotations":[100699,64301],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903826"},{"annotations":[98432],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070778"},{"annotations":[105735],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090515"},{"annotations":[98433],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015813"},{"annotations":[99226],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0089708"},{"annotations":[105736],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090513"},{"annotations":[102247],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0097639"},{"annotations":[99227],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0089707"},{"annotations":[109841],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0160256"},{"annotations":[111979,105737,104703],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090517"},{"annotations":[105738],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090516"},{"annotations":[105739],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090514"},{"annotations":[109842],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1990575"},{"annotations":[89900],"is_not":false,"rel_names":["negatively_regulates","regulates"],"summary":null,"term":"GO:1905533"},{"annotations":[93581,112495,100754,95171],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1905589"},{"annotations":[95172,100755,93582],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1905534"},{"annotations":[95173],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1905626"},{"annotations":[102240],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905647"},{"annotations":[103108],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035524"},{"annotations":[92443],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140300"}]},"cv_name":"biological_process","definition":"The process in which an amino acid is transported across a membrane.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amino acid transport","termid":"GO:0006865"},{"relation_name":"is_a","term_name":"transmembrane 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id: FYPO:0002770
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the localization of a protein to the spindle pole body is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to spindle pole body","termid":"FYPO:0002769"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"decreased protein localization to spindle pole body","synonyms":[{"name":"decreased protein localisation to spindle pole body","type":"exact"},{"name":"decreased protein localization to SPB","type":"exact"},{"name":"reduced protein localization to spindle pole body","type":"exact"}],"termid":"FYPO:0002770"}


id: FYPO:0002200
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a vegetatively growing cell is inviable and has one or more septa, and the cell diameter is larger than normal and the cell length is shorter than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable stubby vegetative cell","termid":"FYPO:0002107"},{"relation_name":"is_a","term_name":"inviable septated vegetative cell with abnormal cell morphology","termid":"FYPO:0002452"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000004","FYPO:0001320","FYPO:0000005","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"inviable stubby septated vegetative cell","synonyms":[{"name":"inviable stubby septated cell during vegetative growth","type":"exact"},{"name":"inviable stubby septated vegetative cell during mitotic cell cycle","type":"related"},{"name":"inviable watermelon-shaped septated vegetative cell","type":"exact"},{"name":"lethal; stubby septated vegetative cell","type":"exact"},{"name":"stubby septated inviable vegetative cell","type":"exact"}],"termid":"FYPO:0002200"}


id: FYPO:0001060
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of glutamate into the cell occurs to a lower extent than normal in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal glutamate import during vegetative growth","termid":"FYPO:0001059"},{"relation_name":"is_a","term_name":"decreased amino acid import during vegetative growth","termid":"FYPO:0001360"},{"relation_name":"is_a","term_name":"decreased glutamate import","termid":"FYPO:0001649"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000138","FYPO:0005447","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased glutamate import during vegetative growth","synonyms":[{"name":"decreased L-glutamate import across plasma membrane during vegetative growth","type":"exact"},{"name":"decreased L-glutamate import during vegetative growth","type":"exact"},{"name":"decreased glutamate import during mitotic cell cycle","type":"related"},{"name":"decreased glutamate import into cell during vegetative growth","type":"exact"},{"name":"decreased glutamate uptake during vegetative growth","type":"exact"},{"name":"reduced glutamate import during vegetative growth","type":"exact"}],"termid":"FYPO:0001060"}


id: MONDO:0009842
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An autoinflammatory disease with defective neutrophil function caused by a homozygous Arg219His mutation in the transcription factor C/EBPε.","definition_xrefs":["PMID:31201888"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autoinflammatory syndrome","termid":"MONDO:0019751"},{"relation_name":"is_a","term_name":"hereditary disorder of connective tissue","termid":"MONDO:0023603"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pelger-Huet-like anomaly and episodic fever with abdominal pain","secondary_identifiers":["MESH:C564899","MEDGEN:376692","OMIM:260570","UMLS:C1850054"],"synonyms":[{"name":"Pelger-Huet-like anomaly and episodic fever with abdominal pain","type":"exact"},{"name":"immunodeficiency 108 with autoinflammation","type":"exact"}],"termid":"MONDO:0009842","xrefs":{"Monarch":{"xref_id":"0009842"}}}


id: GO:0102674
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 24-methylenelophenol + a demethylated methyl acceptor = 9xi-episterol + a methylated methyl acceptor.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete C4-demethylase activity (obsolete GO:0102674)","termid":"GO:0102674"}


id: MONDO:0042370
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Yersinia infectious disease","termid":"MONDO:0007023"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Yersinia enterocolitica infectious disease","secondary_identifiers":["SCTID:80960004","EFO:0009424"],"synonyms":[{"name":"infection by Yersinia enterocolitica","type":"exact"},{"name":"infection caused by Yersinia enterocolitica","type":"related"}],"termid":"MONDO:0042370","xrefs":{"Monarch":{"xref_id":"0042370"}}}


id: PBO:0069657
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 934, pseudogene","termid":"PBO:0069657"}


id: MONDO:0971140
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"mesothelioma","termid":"MONDO:0005065"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"well-differentiated papillary mesothelial tumour of the pleura","secondary_identifiers":["MEDGEN:1863523","UMLS:C5925093","Orphanet:675822"],"termid":"MONDO:0971140","xrefs":{"Monarch":{"xref_id":"0971140"}}}


id: GO:0048836
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the number of petals produced in a developing flower.","definition_xrefs":["GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete specification of increased petal number (obsolete GO:0048836)","termid":"GO:0048836"}


id: PBO:0074050
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SLC25A30 antisense RNA 1","termid":"PBO:0074050"}


id: PBO:0052762
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin 18 pseudogene 54","termid":"PBO:0052762"}


id: MONDO:0002340
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"reflex epilepsy","termid":"MONDO:0017768"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"tactile epilepsy","secondary_identifiers":["MEDGEN:97960","DOID:2550","NCIT:C4687","SCTID:230449001","UMLS:C0393724"],"termid":"MONDO:0002340","xrefs":{"Monarch":{"xref_id":"0002340"}}}


id: PR:O42873
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pdc201 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O42873"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyruvate decarboxylase C3G9.11c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3G9.11c","synonyms":[{"name":"Spom972h-pdc201","type":"exact"}],"termid":"PR:O42873"}


id: PBO:0040275
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"atos homolog A","termid":"PBO:0040275"}


id: GO:0030153
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that mediates resistance to a bacteriocin: any of a heterogeneous group of polypeptide antibiotics that are secreted by certain bacterial strains and are able to kill cells of other susceptible (frequently related) strains after adsorption at specific receptors on the cell surface. They include the colicins, and their mechanisms of action vary.","definition_xrefs":["ISBN:0198506732","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"toxin metabolic process","termid":"GO:0009404"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0019748","GO:0008150"],"is_obsolete":false,"name":"bacteriocin immunity","termid":"GO:0030153"}


id: GO:0071751
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A polymeric IgA immunoglobulin complex that is complexed with one chain of secretory component (SC). Polymeric IgA is present in mucosal areas, having been transported via a transcytosis mechanism in mucosal epithelial cells relying on the polymeric Ig receptor, a portion of which then remains bound to the polymeric IgA as secretory component.","definition_xrefs":["ISBN:0781765196","GOC:add","PMID:16362985"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polymeric IgA immunoglobulin complex","termid":"GO:0071749"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005576"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005576"],"is_obsolete":false,"name":"secretory IgA immunoglobulin complex","synonyms":[{"name":"sIgA antibody","type":"exact"},{"name":"sIgA1 antibody","type":"narrow"},{"name":"secretory IgA antibody","type":"exact"}],"termid":"GO:0071751"}


id: GO:0046844
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Establishment of the micropyle, a single cone-shaped specialization of the chorion that allows sperm entry into the egg prior to fertilization.","definition_xrefs":["ISBN:0879694238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"egg chorion assembly","termid":"GO:0007306"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"chorion micropyle formation","termid":"GO:0046844"}


id: GO:1904338
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of dopaminergic neuron differentiation.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:15522889"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of neuron differentiation","termid":"GO:0045664"},{"relation_name":"regulates","term_name":"dopaminergic neuron differentiation","termid":"GO:0071542"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of dopaminergic neuron differentiation","termid":"GO:1904338"}


id: PBO:0078821
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Pro (anticodon AGG) 2-4","termid":"PBO:0078821"}


id: PR:O14353
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A biotin--protein ligase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR12835:SF4","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"biotin--protein ligase (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC30D10.07c","secondary_identifiers":["UniProtKB:O14353"],"synonyms":[{"name":"SPBC30D10.07c","type":"related"},{"name":"Spom972h-HLCS","type":"exact"},{"name":"biotin apo-protein ligase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O14353"}


id: GO:0006714
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving sesquiterpenoid compounds, terpenoids with three isoprene units.","definition_xrefs":["ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terpenoid metabolic process","termid":"GO:0006721"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0006629","GO:0008150"],"is_obsolete":false,"name":"sesquiterpenoid metabolic process","synonyms":[{"name":"sesquiterpenoid metabolism","type":"exact"}],"termid":"GO:0006714"}


id: FYPO:0005084
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at ribosomal RNA (rRNA) genes is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah","PMID:21151114"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to chromatin at ncRNA gene","termid":"FYPO:0005083"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0001320","FYPO:0000002","FYPO:0001312","FYPO:0000257"],"is_obsolete":false,"name":"normal protein localization to chromatin at rRNA gene","synonyms":[{"name":"normal protein localisation to chromatin at rRNA gene","type":"exact"},{"name":"normal protein localization to chromatin at rDNA","type":"exact"},{"name":"normal protein localization to chromatin at rRNA gene during mitotic cell cycle","type":"related"},{"name":"normal protein localization to chromatin at rRNA gene during vegetative growth","type":"exact"},{"name":"normal protein localization to chromatin at ribosomal DNA","type":"exact"}],"termid":"FYPO:0005084"}


id: PBO:0061059
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nitrilase family member 2","termid":"PBO:0061059"}


id: GO:0033940
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the endohydrolysis of (1->4)-beta-D-xylosyl links in some glucuronoarabinoxylans.","definition_xrefs":["EC:3.2.1.136"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xylanase activity","termid":"GO:0097599"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0016798","GO:0003824","GO:0016787","GO:0003674"],"is_obsolete":false,"name":"glucuronoarabinoxylan endo-1,4-beta-xylanase activity","secondary_identifiers":["MetaCyc:3.2.1.136-RXN"],"synonyms":[{"name":"endoarabinoxylanase activity","type":"related"},{"name":"feraxan endoxylanase activity","type":"related"},{"name":"feraxanase activity","type":"related"},{"name":"glucuronoarabinoxylan 1,4-beta-D-xylanohydrolase activity","type":"related"},{"name":"glucuronoxylan xylanohydrolase activity","type":"related"},{"name":"glucuronoxylan xylohydrolase activity","type":"related"},{"name":"glucuronoxylanase activity","type":"related"}],"termid":"GO:0033940"}


id: PBO:0036388
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"human AIG1 and ADTRP ortholog","termid":"PBO:0036388"}


id: PBO:0071826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S2 pseudogene 21","termid":"PBO:0071826"}


id: PBO:0040279
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATOX1 antisense RNA 1","termid":"PBO:0040279"}


id: PBO:0063454
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphodiesterase 11A","termid":"PBO:0063454"}


id: MONDO:0018396
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare male fertility disorder with obstructive azoospermia (obsolete MONDO:0018396)","secondary_identifiers":["Orphanet:399824"],"synonyms":[{"name":"rare disorder due to impaired sperm transport","type":"exact"},{"name":"rare disorder with obstructive azoospermia","type":"related"}],"termid":"MONDO:0018396","xrefs":{"Monarch":{"xref_id":"0018396"}}}


id: PBO:0085389
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Plasma membrane localized uracil permease; expression is tightly regulated by uracil levels and environmental cues; conformational alterations induced by unfolding or substrate binding result in Rsp5p-mediated ubiquitination and degradation","termid":"PBO:0085389"}


id: GO:0043556
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of translation as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of translation in response to stress","termid":"GO:0032055"},{"relation_name":"part_of","term_name":"cellular response to oxidative stress","termid":"GO:0034599"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of translation in response to oxidative stress","termid":"GO:0043556"}


id: PBO:0036191
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_transport_along_microtubule_to_cell_tip_during_vegetative_growth","termid":"PBO:0036191"}


id: PBO:0082668
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the cytosolic Fe-S protein assembly (CIA) machinery; contains an Fe-S cluster that receives electrons from NADPH via the action of Tah18p in an early step in the CIA pathway; ortholog of human Ciapin1; protein abundance increases in response to DNA replication stress; inviability of the null mutant is functionally complemented by human CIAPIN1","termid":"PBO:0082668"}


id: PBO:0087459
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of a heterodimeric guanine nucleotide exchange factor (GEF); subunit of the Mon1-Ccz1 GEF complex which stimulates nucleotide exchange and activation of Ypt7p, a Rab family GTPase involved in membrane tethering and fusion events at the late endosome and vacuole; GEF activity is stimulated by membrane association and anionic phospholipids; role in localizing Ypt7p to the vacuolar membrane; required for autophagy, the CVT pathway and mitophagy; potential Cdc28 substrate","termid":"PBO:0087459"}


id: MONDO:0024339
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplasm involving a lymph node.","definition_xrefs":["MONDO:patterns/neoplasm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hematopoietic and lymphoid system neoplasm","termid":"MONDO:0002334"},{"relation_name":"is_a","term_name":"lymph node disorder","termid":"MONDO:0004928"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"lymph node neoplasm","secondary_identifiers":["UMLS:C0596869","GARD:6932","MEDGEN:108920","NCIT:C35497"],"synonyms":[{"name":"lymph node neoplasm","type":"exact"},{"name":"lymph node neoplasm (disease)","type":"exact"},{"name":"lymph node tumor","type":"exact"},{"name":"lymph node tumour","type":"exact"},{"name":"neoplasm of lymph node","type":"exact"},{"name":"tumor of lymph node","type":"exact"},{"name":"tumour of lymph node","type":"exact"}],"termid":"MONDO:0024339","xrefs":{"Monarch":{"xref_id":"0024339"}}}


id: PR:O13830
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A peptidyl-tRNA hydrolase 2, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01025","PANTHER:PTHR12649:SF6","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peptidyl-tRNA hydrolase 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC19A8.14","secondary_identifiers":["UniProtKB:O13830"],"synonyms":[{"name":"PTH 2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-PTRH2","type":"exact"}],"termid":"PR:O13830"}


id: GO:0097269
data:
  {"annotated_genes":["SJAG_01865","SJAG_04568"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[121367,121368],"is_not":false,"summary":null,"term":"GO:0097269"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: 7 isopentenyl diphosphate + (2E,6E)-farnesyl diphosphate = all-trans-decaprenyl diphosphate + 7 diphosphate.","definition_xrefs":["PMID:16262699","RHEA:27802"],"direct_ancestors":[{"relation_name":"is_a","term_name":"prenyl diphosphate synthase activity","termid":"GO:0120531"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01865":null,"SJAG_04568":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016765"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016765","GO:0003824","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"all-trans-decaprenyl-diphosphate synthase activity","references_by_uniquename":{"PMID:29191091":null},"secondary_identifiers":["EC:2.5.1.91","Reactome:R-HSA-2162253"],"synonyms":[{"name":"(2E,6E)-farnesyl-diphosphate:isopentenyl-diphosphate farnesyltranstransferase activity","type":"exact"},{"name":"2-trans,6-trans-farnesyl diphosphate activity","type":"exact"},{"name":"decaprenyl pyrophosphate synthetase activity","type":"broad"},{"name":"decaprenyl-diphosphate synthase activity","type":"broad"},{"name":"polyprenylpyrophosphate synthetase activity","type":"broad"},{"name":"terpenoidallyltransferase activity","type":"broad"},{"name":"terpenyl pyrophosphate synthetase activity","type":"broad"},{"name":"trans-prenyltransferase activity","type":"broad"}],"termid":"GO:0097269","terms_by_termid":{"GO:0006743":null,"GO:0006744":null,"GO:0097269":null}}


id: MONDO:0013727
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any pregnancy loss, recurrent, susceptibility in which the cause of the disease is a mutation in the F5 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pregnancy loss, recurrent, susceptibility","termid":"MONDO:0000144"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pregnancy loss, recurrent, susceptibility to, 1","secondary_identifiers":["OMIM:614389","UMLS:C3280670","MEDGEN:482300"],"synonyms":[{"name":"F5 pregnancy loss, recurrent, susceptibility","type":"exact"},{"name":"RPRGL1","type":"related"},{"name":"Rpl","type":"related"},{"name":"Rprgl","type":"related"},{"name":"abortion, spontaneous, recurrent","type":"related"},{"name":"embryonic loss, recurrent","type":"related"},{"name":"fetal loss, recurrent, susceptibility to","type":"related"},{"name":"foetal loss, recurrent, susceptibility to","type":"related"},{"name":"miscarriage, recurrent","type":"related"},{"name":"pregnancy loss, recurrent, susceptibility caused by mutation in F5","type":"exact"},{"name":"pregnancy loss, recurrent, susceptibility to, 1","type":"exact"},{"name":"pregnancy loss, recurrent, susceptibility to, type 1","type":"exact"},{"name":"stillbirth, recurrent","type":"related"}],"termid":"MONDO:0013727","xrefs":{"Monarch":{"xref_id":"0013727"}}}


id: FYPO:0002666
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which peptide-serine-N-acetyltransferase activity is absent.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal peptide-serine-N-acetyltransferase activity","termid":"FYPO:0002665"},{"relation_name":"is_a","term_name":"abolished peptide alpha-N-acetyltransferase activity","termid":"FYPO:0007842"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000654","FYPO:0000707","FYPO:0000652","FYPO:0000661"],"is_obsolete":false,"name":"abolished peptide-serine-N-acetyltransferase activity","synonyms":[{"name":"peptide-serine-N-acetyltransferase activity abolished","type":"exact"}],"termid":"FYPO:0002666"}


id: PBO:0073098
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"succinate dehydrogenase complex subunit D pseudogene 2","termid":"PBO:0073098"}


id: PATO:0001431
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An emergent molecular quality that arises by virtue of the bearer's disposition to exhibit molecular attraction to another entity in contact.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"physical quality","termid":"PATO:0001018"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adhesivity","synonyms":[{"name":"adhesiveness","type":"exact"},{"name":"stickiness","type":"related"}],"termid":"PATO:0001431"}


id: PBO:0029947
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_tyrosine_phosphorylation_during_cellular_response_to_osmotic_stress","termid":"PBO:0029947"}


id: MOD:01681
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces one hydrogen atom of an L-aspartic acid residue with one methyl group.","definition_xrefs":["Unimod:34#D","OMSSA:16"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monomethylated residue","termid":"MOD:00599"},{"relation_name":"is_a","term_name":"methylated aspartic acid","termid":"MOD:00887"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"monomethylated L-aspartic acid","synonyms":[{"name":"Me1Asp","type":"exact"},{"name":"Methyl","type":"related"},{"name":"Methylation","type":"related"},{"name":"methyld","type":"exact"}],"termid":"MOD:01681"}


id: PBO:0064247
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PLD5 pseudogene 1","termid":"PBO:0064247"}


id: GO:0002303
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an antigenically naive gamma-delta T cell acquires the specialized features of an effector, regulatory, or memory T cell and contributes to an immune response. Effector T cells include cells which provide T cell help or exhibit cytotoxicity towards other cells.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gamma-delta T cell activation involved in immune response","termid":"GO:0002290"},{"relation_name":"is_a","term_name":"T cell differentiation involved in immune response","termid":"GO:0002292"},{"relation_name":"is_a","term_name":"gamma-delta T cell differentiation","termid":"GO:0042492"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"gamma-delta T cell differentiation involved in immune response","synonyms":[{"name":"gamma-delta T cell development involved in immune response","type":"related"},{"name":"gamma-delta T cell differentiation during immune response","type":"related"},{"name":"gamma-delta T lymphocyte differentiation during immune response","type":"related"},{"name":"gamma-delta T-cell differentiation during immune response","type":"related"},{"name":"gamma-delta T-lymphocyte differentiation during immune response","type":"related"}],"termid":"GO:0002303"}


id: MONDO:0009367
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"McKusick-Kaufman syndrome is a very rare, genetic developmental disorder presenting in the neonatal period characterized by genitourinary malformations, polydactyly, and more rarely, congenital heart disease or gastrointestinal malformations.","definition_xrefs":["Orphanet:2473"],"direct_ancestors":[{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome without intellectual disability","termid":"MONDO:0015161"},{"relation_name":"is_a","term_name":"MKKS-related ciliopathy","termid":"MONDO:1040050"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"McKusick-Kaufman syndrome","secondary_identifiers":["MESH:C538159","MedDRA:10052312","MEDGEN:184924","SCTID:702407009","ICD9:758.89","GARD:3427","UMLS:C0948368","OMIM:236700","DOID:0111255"],"synonyms":[{"name":"HMCS","type":"related"},{"name":"Kaufman McKusick syndrome","type":"related"},{"name":"Kaufman-Mckusick syndrome","type":"exact"},{"name":"MCKUSICK-Kaufman syndrome","type":"related"},{"name":"MKKS","type":"related"},{"name":"McKusick Kaufman syndrome","type":"related"},{"name":"McKusick-Kaufman syndrome","type":"exact"},{"name":"hydrometrocolpos syndrome","type":"related"},{"name":"hydrometrocolpos, postaxial polydactyly, and congenital heart malformation","type":"related"},{"name":"hydrometrocolpos-postaxial polydactyly syndrome","type":"exact"}],"termid":"MONDO:0009367","xrefs":{"Monarch":{"xref_id":"0009367"}}}


id: PBO:0083167
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; almost completely overlaps verified ORF PAD1/YDR538W","termid":"PBO:0083167"}


id: SO:1000102
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000102 sequence_variant_affecting_level_of_translational_product (obsolete SO:1000102)","synonyms":[{"name":"mutation affecting level of translational product","type":"related"},{"name":"sequence variant affecting level of translational product","type":"exact"}],"termid":"SO:1000102"}


id: PBO:0078575
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tripartite motif-containing 51J, pseudogene","termid":"PBO:0078575"}


id: GO:0047196
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a long-chain-alcohol + acyl-CoA = a long-chain ester + CoA.","definition_xrefs":["MetaCyc:2.3.1.75-RXN","EC:2.3.1.75"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acyltransferase activity","termid":"GO:0008374"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016746","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"long-chain-alcohol O-fatty-acyltransferase activity","secondary_identifiers":["RHEA:38443","Reactome:R-HSA-5696424","Reactome:R-HSA-8848582","GO:0103095"],"synonyms":[{"name":"acyl-CoA:long-chain-alcohol O-acyltransferase activity","type":"related"},{"name":"wax ester synthase activity","type":"exact"},{"name":"wax synthase activity","type":"related"},{"name":"wax-ester synthase activity","type":"related"}],"termid":"GO:0047196"}


id: PBO:0049862
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hepatocellular carcinoma up-regulated EZH2-associated long non-coding RNA","termid":"PBO:0049862"}


id: PBO:0045223
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DnaJ heat shock protein family (Hsp40) member C11","termid":"PBO:0045223"}


id: PBO:0054308
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1700","termid":"PBO:0054308"}


id: GO:0160231
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An actin-based cell projection extending laterally from the basolateral membrane of tuft cells in epithelial tissues, including the intestinal epithelium. These thin projections, typically 3-4 per cell and up to 3 micron long, directly contact the nuclei of adjacent epithelial cells, potentially facilitating intercellular communication and molecular exchange.","definition_xrefs":["PMID:28490731","PMID:37863104"],"direct_ancestors":[{"relation_name":"is_a","term_name":"actin-based cell projection","termid":"GO:0098858"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"cytospinule","termid":"GO:0160231"}


id: GO:2000216
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of proline metabolic process.","definition_xrefs":["GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of amino acid metabolic process","termid":"GO:0045764"},{"relation_name":"is_a","term_name":"positive regulation of small molecule metabolic process","termid":"GO:0062013"},{"relation_name":"is_a","term_name":"regulation of proline metabolic process","termid":"GO:2000214"},{"relation_name":"positively_regulates","term_name":"proline metabolic process","termid":"GO:0006560"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006520"},{"rel_name":"positively_regulates","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"positive regulation of proline metabolic process","synonyms":[{"name":"positive regulation of proline metabolism","type":"exact"}],"termid":"GO:2000216"}


