# terms

id: PBO:0113447
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit l of the mitochondrial F1F0 ATP synthase; F1F0 ATP synthase is a large, evolutionarily conserved enzyme complex required for ATP synthesis; more abundant in the ATP synthase monomer; involved in the calcium-induced permeability transition and calcium homeostasis; does not impact ATP synthase activity and stability; N-terminal region has sequence similarity to Atp19p; conserved in A. gossypii; detected in highly purified mitochondria in high-throughput studies","termid":"PBO:0113447"}


id: MONDO:0017141
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete hemorrhagic disorder due to a constitutional thrombocytopenia (obsolete MONDO:0017141)","secondary_identifiers":["Orphanet:275729"],"synonyms":[{"name":"rare bleeding disorder due to a constitutional thrombocytopenia","type":"exact"},{"name":"rare bleeding disorder due to a quantitative platelet defect","type":"exact"},{"name":"rare coagulopathy due to a constitutional thrombocytopenia","type":"exact"},{"name":"rare coagulopathy due to a quantitative platelet defect","type":"exact"},{"name":"rare hemorrhagic disorder due to a constitutional thrombocytopenia","type":"exact"},{"name":"rare hemorrhagic disorder due to a quantitative platelet defect","type":"exact"}],"termid":"MONDO:0017141","xrefs":{"Monarch":{"xref_id":"0017141"}}}


id: MONDO:0019698
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"skeletal dysplasia","termid":"MONDO:0018230"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bent bone dysplasia","secondary_identifiers":["GARD:19196","SCTID:254095002","MEDGEN:609415","Orphanet:93439","UMLS:C0432238","ICD9:756.59"],"synonyms":[{"name":"campomelic dysplasia and related disorders","type":"related"}],"termid":"MONDO:0019698","xrefs":{"Monarch":{"xref_id":"0019698"}}}


id: PBO:0069118
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 367, pseudogene","termid":"PBO:0069118"}


id: MONDO:0017621
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital sucrase-isomaltase deficiency","termid":"MONDO:0009114"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0037792"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004335","MONDO:0037792"],"is_obsolete":false,"name":"congenital sucrase-isomaltase deficiency with starch and lactose intolerance","secondary_identifiers":["Orphanet:306474"],"synonyms":[{"name":"CSID with starch and lactose intolerance","type":"exact"},{"name":"congenital sucrase-isomaltose malabsorption with starch and lactose intolerance","type":"exact"},{"name":"congenital sucrose intolerance with starch and lactose intolerance","type":"exact"},{"name":"disaccharide intolerance with starch and lactose intolerance","type":"exact"}],"termid":"MONDO:0017621","xrefs":{"Monarch":{"xref_id":"0017621"}}}


id: MONDO:1011858
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system disorder, non-human animal","termid":"MONDO:1011336"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"progressive spinal myelopathy, non-human animal","secondary_identifiers":["OMIA:000832"],"termid":"MONDO:1011858","xrefs":{"Monarch":{"xref_id":"1011858"}}}


id: PBO:0027615
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-cut_following_normal_mitosis","termid":"PBO:0027615"}


id: MONDO:1011710
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"auditory system disorder, non-human animal","termid":"MONDO:1011301"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"bilateral deafness and vestibular dysfunction, non-human animal","secondary_identifiers":["OMIA:002148"],"termid":"MONDO:1011710","xrefs":{"Monarch":{"xref_id":"1011710"}}}


id: GO:0038186
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A nuclear receptor activity regulated by a bile acid binding and modulating the transcription of specific gene sets transcribed by RNA polymerase II.","definition_xrefs":["PMID:36409000","PMID:35415765","PMID:32480317"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear receptor activity","termid":"GO:0004879"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140110"},{"rel_name":"is_a","termid":"GO:0003700"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0140110","GO:0003674","GO:0003700","GO:0038023"],"is_obsolete":false,"name":"bile acid nuclear receptor activity","secondary_identifiers":["Reactome:R-HSA-5340195"],"synonyms":[{"name":"farnesoid X nuclear receptor activity","type":"related"},{"name":"farnesoid X receptor activity","type":"related"},{"name":"lithocholic acid receptor activity","type":"broad"}],"termid":"GO:0038186"}


id: GO:0008466
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-glucose + glycogenin = UDP + glucosylglycogenin. This first reaction is a self glucosylation. Further UDP-glucose goups are added to the [1,4-alpha-D-glucosyl](n) group of glycogenin until a length of about 5-13 residues.","definition_xrefs":["EC:2.4.1.186"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-glucosyltransferase activity","termid":"GO:0035251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016757","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"glycogenin glucosyltransferase activity","secondary_identifiers":["GO:0047210","Reactome:R-HSA-3322025","Reactome:R-HSA-3814838","Reactome:R-HSA-3322019","Reactome:R-HSA-3322014","Reactome:R-HSA-3322003"],"synonyms":[{"name":"1,4alpha-glucan-protein synthase (UDP-forming) activity","type":"exact"},{"name":"UDP-alpha-D-glucose:glycogenin alpha-D-glucosyltransferase activity","type":"related"},{"name":"UDP-glucose:glycogenin glucosyltransferase activity","type":"related"},{"name":"alpha-1,4-glucan-protein synthase (UDP-forming) activity","type":"exact"},{"name":"glycogenin activity","type":"related"},{"name":"priming glucosyltransferase activity","type":"related"}],"termid":"GO:0008466"}


id: SO:0000952
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An origin of vegetative replication in plasmids and phages.","definition_xrefs":["SO:as"],"direct_ancestors":[{"relation_name":"is_a","term_name":"origin_of_replication","termid":"SO:0000296"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oriV","synonyms":[{"name":"origin of vegetative replication","type":"exact"}],"termid":"SO:0000952"}


id: FYPO:0005193
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of torin1 than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002682"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000139","FYPO:0002682","FYPO:0005447","FYPO:0000003"],"is_obsolete":false,"name":"resistance to torin1","synonyms":[{"name":"resistant to torin1","type":"exact"},{"name":"resistance to torin 1","type":"exact"},{"name":"resistance to torin1 during mitotic cell cycle","type":"related"},{"name":"resistance to torin1 during vegetative growth","type":"exact"}],"termid":"FYPO:0005193"}


id: GO:0006606
data:
  {"annotated_genes":["SJAG_00065","SJAG_04645","SJAG_02592","SJAG_01449","SJAG_03662","SJAG_03986","SJAG_00586","SJAG_03593","SJAG_03959","SJAG_01065","SJAG_01621","SJAG_04411","SJAG_03002","SJAG_01584","SJAG_02998","SJAG_03300","SJAG_01909","SJAG_01083","SJAG_04148","SJAG_02210","SJAG_01311","SJAG_00968","SJAG_01185","SJAG_02425","SJAG_03693","SJAG_01374","SJAG_01834","SJAG_02274","SJAG_01013","SJAG_01789","SJAG_00375","SJAG_01655","SJAG_03907","SJAG_00471","SJAG_04366","SJAG_03299","SJAG_00383","SJAG_03729","SJAG_01328","SJAG_02520","SJAG_00840","SJAG_03048","SJAG_02757","SJAG_03453","SJAG_03470","SJAG_00093"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[60806,67485,71761,72159,72760,73066,73278,73344,74386,74574,74633,74786,75502,75529,75783,76001,76241,76920,77372,77461,77468,78114,79710,80298,81493,81898,82010,82234,90750,95852,96150,98008,99723,107000,108284,117805],"is_not":false,"summary":null,"term":"GO:0006606"},{"annotations":[107753],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:0042308"},{"annotations":[75439,76766,74958,78740,77855,103065],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006607"},{"annotations":[104302,96239,92697],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:0042307"}]},"cv_name":"biological_process","definition":"The directed movement of a protein from the cytoplasm to the nucleus.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein transport","termid":"GO:0006886"},{"relation_name":"is_a","term_name":"protein localization to nucleus","termid":"GO:0034504"},{"relation_name":"is_a","term_name":"import into nucleus","termid":"GO:0051170"},{"relation_name":"is_a","term_name":"establishment of protein localization to organelle","termid":"GO:0072594"}],"gene_count":46,"genes_by_uniquename":{"SJAG_00065":null,"SJAG_00093":null,"SJAG_00375":null,"SJAG_00383":null,"SJAG_00471":null,"SJAG_00586":null,"SJAG_00840":null,"SJAG_00968":null,"SJAG_01013":null,"SJAG_01065":null,"SJAG_01083":null,"SJAG_01185":null,"SJAG_01311":null,"SJAG_01328":null,"SJAG_01374":null,"SJAG_01449":null,"SJAG_01584":null,"SJAG_01621":null,"SJAG_01655":null,"SJAG_01789":null,"SJAG_01834":null,"SJAG_01909":null,"SJAG_02210":null,"SJAG_02274":null,"SJAG_02425":null,"SJAG_02520":null,"SJAG_02592":null,"SJAG_02757":null,"SJAG_02998":null,"SJAG_03002":null,"SJAG_03048":null,"SJAG_03299":null,"SJAG_03300":null,"SJAG_03453":null,"SJAG_03470":null,"SJAG_03593":null,"SJAG_03662":null,"SJAG_03693":null,"SJAG_03729":null,"SJAG_03907":null,"SJAG_03959":null,"SJAG_03986":null,"SJAG_04148":null,"SJAG_04366":null,"SJAG_04411":null,"SJAG_04645":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006913"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006913","GO:0006810"],"is_obsolete":false,"name":"protein import into nucleus","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"establishment of protein localization to nucleus","type":"exact"},{"name":"protein import into cell nucleus","type":"exact"},{"name":"protein nucleus import","type":"exact"},{"name":"protein transport from cytoplasm to nucleus","type":"exact"}],"termid":"GO:0006606","terms_by_termid":{"GO:0006606":null,"GO:0006607":null,"GO:0042307":null,"GO:0042308":null}}


id: PR:O74908
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A tRNA-splicing endonuclease subunit Sen54 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR21027:SF0","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-splicing endonuclease subunit sen54 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC613.09","secondary_identifiers":["UniProtKB:O74908"],"synonyms":[{"name":"SPCC613.09","type":"related"},{"name":"Spom972h-TSEN54","type":"exact"},{"name":"tRNA-intron endonuclease sen54 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74908"}


id: GO:1990772
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regulated release of substance P, a peptide hormone that is involved in neurotransmission, inflammation, and antimicrobial activity.","definition_xrefs":["PMID:11278900"],"direct_ancestors":[{"relation_name":"is_a","term_name":"peptide hormone secretion","termid":"GO:0030072"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0023052","GO:0051179"],"is_obsolete":false,"name":"substance P secretion","termid":"GO:1990772"}


id: MONDO:0002485
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplasm that arises from the breast and is composed of cells of neuroendocrine origin. Most cases are neuroendocrine carcinomas. Primary carcinoid tumors of the breast are very rare.","definition_xrefs":["NCIT:C5169"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuroendocrine neoplasm","termid":"MONDO:0019496"},{"relation_name":"is_a","term_name":"breast neoplasm","termid":"MONDO:0021100"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"breast neuroendocrine neoplasm","secondary_identifiers":["MEDGEN:231969","UMLS:C1332635","DOID:3009"],"synonyms":[{"name":"breast NET","type":"exact"},{"name":"breast endocrine neoplasm","type":"exact"},{"name":"breast neuroendocrine neoplasm","type":"exact"},{"name":"breast neuroendocrine tumor","type":"exact"},{"name":"breast neuroendocrine tumor, well differentiated, low or intermediate grade","type":"exact"},{"name":"breast neuroendocrine tumour","type":"exact"},{"name":"neuroendocrine neoplasm of breast","type":"exact"},{"name":"neuroendocrine neoplasm of the breast","type":"exact"},{"name":"neuroendocrine tumor of the breast","type":"exact"},{"name":"neuroendocrine tumour of the breast","type":"exact"}],"termid":"MONDO:0002485","xrefs":{"Monarch":{"xref_id":"0002485"}}}


id: GO:0160220
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (R)-lactate + ATP + D-alanine = ADP + D-alanyl-(R)-lactate + phosphate.","definition_xrefs":["RHEA:37347"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ligase activity, forming carbon-oxygen bonds","termid":"GO:0016875"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016874","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"D-alanine-(R)-lactate ligase activity","secondary_identifiers":["EC:6.1.2.1","KEGG_REACTION:R09588","MetaCyc:RXN-11298"],"synonyms":[{"name":"D-alanyl-D-lactate ligase activity","type":"exact"}],"termid":"GO:0160220"}


id: PBO:0039573
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat and sterile alpha motif domain containing 1A","termid":"PBO:0039573"}


id: PBO:0113253
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Pantothenate kinase, ATP:D-pantothenate 4'-phosphotransferase; cytoplasmic enzyme that catalyzes the first committed step in the universal biosynthetic pathway for coenzyme A (CoA) synthesis; transcription is regulated by Upc2p via a sterol response element; overexpressed human homologs, PANK1 and PANK3, complement yeast hypomorphic alleles, while PANK2, a gene implicated in pantothenate-kinase associated neurodegeneration, partially complements after the mitochondrial transit peptide is removed","termid":"PBO:0113253"}


id: FYPO:0000178
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A regulation phenotype observed in the vegetative growth phase of the life cycle in which regulation of cytokinesis is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation phenotype during vegetative growth","termid":"FYPO:0001334"},{"relation_name":"is_a","term_name":"abnormal cellular process during vegetative growth","termid":"FYPO:0001362"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"abnormal regulation of cytokinesis","synonyms":[{"name":"abnormal regulation of cytokinesis during mitotic cell cycle","type":"related"},{"name":"abnormal regulation of cytokinesis during vegetative growth","type":"exact"},{"name":"abnormal regulation of mitotic cytokinesis","type":"exact"}],"termid":"FYPO:0000178"}


id: FYPO:0006457
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at the central core of the centromeric regions is abolished during the first meiotic nuclear division.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein localization during meiotic cell cycle","termid":"FYPO:0005208"},{"relation_name":"is_a","term_name":"abolished protein localization to chromatin during meiosis I","termid":"FYPO:0006161"},{"relation_name":"is_a","term_name":"abnormal protein localization to centromere during meiotic cell cycle","termid":"FYPO:0006529"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985","FYPO:0005447","FYPO:0000138"],"is_obsolete":false,"name":"abolished protein localization to centromere central core during meiosis I","synonyms":[{"name":"abolished protein localisation to centromere central core during meiosis I","type":"exact"},{"name":"abolished protein localisation to chromatin at centromere central core during meiosis I","type":"exact"},{"name":"abolished protein localization to centromere central core during first meiotic nuclear division","type":"exact"},{"name":"abolished protein localization to chromatin at centromere central core during meiosis I","type":"exact"},{"name":"protein localization to centromere central core abolished during meiosis I","type":"exact"},{"name":"protein localization to chromatin at centromere central core abolished during meiosis I","type":"exact"}],"termid":"FYPO:0006457"}


id: GO:0043559
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to insulin, a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"},{"relation_name":"is_a","term_name":"peptide hormone binding","termid":"GO:0017046"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674"],"is_obsolete":false,"name":"insulin binding","termid":"GO:0043559"}


id: PBO:0047706
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FMNL1 antisense RNA 1","termid":"PBO:0047706"}


id: GO:0010147
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of fructan, a polysaccharide consisting of fructose residues.","definition_xrefs":["GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polysaccharide catabolic process","termid":"GO:0000272"},{"relation_name":"is_a","term_name":"fructan metabolic process","termid":"GO:0010145"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"fructan catabolic process","secondary_identifiers":["MetaCyc:PWY-862"],"synonyms":[{"name":"fructan breakdown","type":"exact"},{"name":"fructan catabolism","type":"exact"},{"name":"fructan degradation","type":"exact"},{"name":"levan catabolic process","type":"exact"},{"name":"levan catabolism","type":"exact"}],"termid":"GO:0010147"}


id: MONDO:0017445
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"skeletal dysplasia","termid":"MONDO:0018230"},{"relation_name":"is_a","term_name":"dysostosis","termid":"MONDO:0018234"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"acheiria","secondary_identifiers":["Orphanet:294983","GARD:21196","MEDGEN:488815","SCTID:371199008","UMLS:C0265594","icd11.foundation:1428065029"],"synonyms":[{"name":"congenital absence of hand","type":"exact"}],"termid":"MONDO:0017445","xrefs":{"Monarch":{"xref_id":"0017445"}}}


id: MONDO:1010310
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Schmid metaphyseal chondrodysplasia dwarfism that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"osteochondrodysplasia, non-human animal","termid":"MONDO:1010306"},{"relation_name":"is_a","term_name":"syndromic disease, non-human animal","termid":"MONDO:1011360"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"schmid metaphyseal chondrodysplasia dwarfism, non-human animal","secondary_identifiers":["OMIA:001718"],"termid":"MONDO:1010310","xrefs":{"Monarch":{"xref_id":"1010310"}}}


id: GO:0035699
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The migration of a T-helper 17 cell from the blood vessels into the surrounding tissue.","definition_xrefs":["CL:0000899","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"helper T cell extravasation","termid":"GO:0035684"},{"relation_name":"is_a","term_name":"CD8-positive, alpha-beta T cell extravasation","termid":"GO:0035697"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"T-helper 17 cell extravasation","termid":"GO:0035699"}


id: GO:0007329
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process involving pheromones that activates or increases the rate of transcription from an RNA polymerase II promoter.","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transcription from RNA polymerase II promoter by pheromones (obsolete GO:0007329)","synonyms":[{"name":"activation of transcription from RNA polymerase II promoter by pheromones","type":"narrow"},{"name":"positive regulation of transcription from Pol II promoter by pheromones","type":"exact"},{"name":"stimulation of transcription from RNA polymerase II promoter by pheromones","type":"narrow"},{"name":"up regulation of transcription from RNA polymerase II promoter by pheromones","type":"exact"},{"name":"up-regulation of transcription from RNA polymerase II promoter by pheromones","type":"exact"},{"name":"upregulation of transcription from RNA polymerase II promoter by pheromones","type":"exact"}],"termid":"GO:0007329"}


id: PBO:0086200
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that associates with mitochondrial ribosome; green fluorescent protein (GFP)-fusion protein localizes to the mitochondrion; null mutation results in a decrease in plasma membrane electron transport","termid":"PBO:0086200"}


id: GO:1904275
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The disaggregation of a tricellular tight junction into its constituent components.","definition_xrefs":["PMID:22640933","GOC:mr","GO_REF:0000079","GOC:TermGenie","PMID:25097825","PMID:4203962"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tight junction disassembly","termid":"GO:1905071"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"tricellular tight junction disassembly","termid":"GO:1904275"}


id: PBO:0035947
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_RNA_3'-end_processing_during_cellular_response_to_endoplasmic_reticulum_stress","termid":"PBO:0035947"}


id: PBO:0057916
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3619","termid":"PBO:0057916"}


id: PBO:0091358
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small non-coding RNA, quiescence specific","termid":"PBO:0091358"}


id: SO:0002283
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Primarily found in animals, the terminal inverted repeat (TIR) transposon superfamily piggyBac elements favour insertion adjacent to TTAA.","definition_xrefs":["PMID:17984973"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terminal_inverted_repeat_element","termid":"SO:0000208"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piggyBac_TIR_transposon","synonyms":[{"name":"DTB transposon","type":"exact"},{"name":"PiggyBac transposable element","type":"exact"},{"name":"piggyBac TIR transposon","type":"exact"}],"termid":"SO:0002283"}


id: PBO:0016060
data:
  {"annotation_feature_type":"gene","cv_name":"complementation","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"functionally complements S. cerevisiae XRN1","termid":"PBO:0016060"}


id: GO:0097649
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A complete microtubule with 13 protofilaments that fuses with an incomplete microtubule called B tubule (containing 10 protofilaments only) to form an axonemal outer doublet. Inner and outer dynein arms, as well as the radial spoke, are attached to the A tubule.","definition_xrefs":["ISBN:0716731363","GOC:cilia"],"direct_ancestors":[{"relation_name":"is_a","term_name":"axonemal microtubule","termid":"GO:0005879"},{"relation_name":"part_of","term_name":"axonemal doublet microtubule","termid":"GO:0097545"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0015630"}],"interesting_parent_ids":["GO:0015630","GO:0005737","GO:0005575"],"is_obsolete":false,"name":"A axonemal microtubule","synonyms":[{"name":"A tubule","type":"broad"}],"termid":"GO:0097649"}


id: PBO:0063613
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prefoldin subunit 4","termid":"PBO:0063613"}


id: PBO:0070007
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 1304, pseudogene","termid":"PBO:0070007"}


id: PBO:0053420
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 362","termid":"PBO:0053420"}


id: PBO:0085550
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein component of the small (40S) ribosomal subunit; RPS0B has a paralog, RPS0A, that arose from the whole genome duplication; required for maturation of 18S rRNA along with Rps0Ap; deletion of either RPS0 gene reduces growth rate, deletion of both genes is lethal; homologous to human ribosomal protein SA and bacterial S2","termid":"PBO:0085550"}


id: FYPO:0007985
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which equatorial microtubule organizing center (eMTOC) assembly occurs earlier than normal. eMTOC assembly is the aggregation, arrangement and bonding together of a set of components to form an equatorial microtubule organizing center.","definition_xrefs":["PomBase:mlr","PMID:15068790"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal eMTOC assembly","termid":"FYPO:0005690"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000054","FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0001320"],"is_obsolete":false,"name":"early eMTOC assembly","termid":"FYPO:0007985"}


id: MONDO:0003728
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A usually aggressive malignant neoplasm arising from the breast. It is characterized by the presence of spindle-shaped fibroblasts and collagenous stroma formation in a herringbone growth pattern.","definition_xrefs":["NCIT:C5185"],"direct_ancestors":[{"relation_name":"is_a","term_name":"breast sarcoma","termid":"MONDO:0002490"},{"relation_name":"is_a","term_name":"fibrosarcoma","termid":"MONDO:0005164"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"breast fibrosarcoma","secondary_identifiers":["UMLS:C1332630","MEDGEN:272385","DOID:6001"],"synonyms":[{"name":"breast fibrosarcoma","type":"exact"},{"name":"breast fibrosarcoma (disease)","type":"exact"},{"name":"fibrosarcoma of breast","type":"exact"},{"name":"fibrosarcoma of the breast","type":"exact"}],"termid":"MONDO:0003728","xrefs":{"Monarch":{"xref_id":"0003728"}}}


id: GO:0061832
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Testis-specific junction between mature Sertoli cells involved in establishing the blood-testis barrier of the Sertoli cell.","definition_xrefs":["GOC:dph","GOC:bc","GOC:aruk","PMID:22332112","PMID:23546604"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell junction","termid":"GO:0005911"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"basal ectoplasmic specialization","synonyms":[{"name":"basal ES","type":"exact"}],"termid":"GO:0061832"}


id: GO:0019491
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of ectoine (1,4,5,6-tetrahydro-2-methyl-4-pyrimidinecarboxylic acid), a tetrahydropyrimidine commonly synthesized by halophilic bacteria.","definition_xrefs":["PMID:11823218","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ectoine metabolic process","termid":"GO:0042399"},{"relation_name":"is_a","term_name":"monocarboxylic acid biosynthetic process","termid":"GO:0072330"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"ectoine biosynthetic process","secondary_identifiers":["MetaCyc:P101-PWY"],"synonyms":[{"name":"ectoine anabolism","type":"exact"},{"name":"ectoine biosynthesis","type":"exact"},{"name":"ectoine formation","type":"exact"},{"name":"ectoine synthesis","type":"exact"}],"termid":"GO:0019491"}


id: SO:0001489
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"The status of a whole genome sequence,where annotation, and verification of coding regions has occurred.","definition_xrefs":["DOI:10.1126"],"direct_ancestors":[{"relation_name":"is_a","term_name":"whole_genome_sequence_status","termid":"SO:0001499"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_directed_improved_draft","synonyms":[{"name":"annotation directed improvement","type":"exact"}],"termid":"SO:0001489"}


id: MONDO:0975846
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital disorder of glycosylation","termid":"MONDO:0015286"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0024322"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0024322"],"is_obsolete":false,"name":"congenital disorder of glycosylation, type 1DD","secondary_identifiers":["OMIM:301133"],"termid":"MONDO:0975846","xrefs":{"Monarch":{"xref_id":"0975846"}}}


id: MONDO:0006969
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Sialadenitis is an infection of the salivary glands. It is usually caused by a virus or bacteria. The parotid (in front ofthe ear) and submandibular (under the chin) glands are most commonly affected. Sialadenitis may be associated with pain, tenderness, redness, and gradual, localized swelling of the affected area. Sialadenitis most commonly affects the elderly and chronically ill especially those with dry mouth or who are dehydrated, but can also affected people of any age including newborn babies. Diagnosis is usually made by clinical exam but a CT scan, MRI scan or ultrasound may be done if the doctor suspects an abscess or to look for stones. Treatment may include an antibiotic (if bacterial), warm compresses, increasing fluid intake and good oral hygiene. Most salivary gland infections go away on their own or are cured with treatment. Complications are not common.","direct_ancestors":[{"relation_name":"is_a","term_name":"salivary gland disorder","termid":"MONDO:0001142"},{"relation_name":"is_a","term_name":"lymphadenitis","termid":"MONDO:0002052"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"sialadenitis","secondary_identifiers":["SCTID:42982001","EFO:1001179","MedDRA:10040627","NCIT:C26882","UMLS:C0037023","MEDGEN:48657","NCIT:C115165","DOID:10303","MESH:D012793","ICD9:527.2"],"synonyms":[{"name":"adenitis, salivary gland","type":"related"},{"name":"lymphadenitis (disease) of saliva-secreting gland","type":"exact"},{"name":"saliva-secreting gland lymphadenitis (disease)","type":"exact"},{"name":"salivary gland inflammation","type":"related"},{"name":"sialitis","type":"exact"},{"name":"sialoadenitis","type":"exact"}],"termid":"MONDO:0006969","xrefs":{"Monarch":{"xref_id":"0006969"}}}


id: GO:0030597
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of N-glycosidic bonds in an RNA molecule.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing N-glycosyl compounds","termid":"GO:0016799"},{"relation_name":"is_a","term_name":"catalytic activity, acting on RNA","termid":"GO:0140098"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140098"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0016798"}],"interesting_parent_ids":["GO:0003674","GO:0140098","GO:0003824","GO:0016787","GO:0016798"],"is_obsolete":false,"name":"RNA glycosylase activity","termid":"GO:0030597"}


id: GO:0120153
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a carbohydrate in the presence of calcium.","definition_xrefs":["PMID:25912189"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate binding","termid":"GO:0030246"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"calcium-dependent carbohydrate binding","termid":"GO:0120153"}


id: PBO:0048773
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"geminin DNA replication inhibitor","termid":"PBO:0048773"}


id: PBO:0078052
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha joining 42","termid":"PBO:0078052"}


id: PBO:0002718
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome biogenesis protein Noc1 (predicted)","termid":"PBO:0002718"}


id: PBO:0029490
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_microcolony,_elongated_cells_(obsolete_FYPO:0002225)","termid":"PBO:0029490"}


id: PATO:0001576
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A pressure which is relatively high.","definition_xrefs":["PATO:GVG"],"direct_ancestors":[{"relation_name":"increased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"pressure","termid":"PATO:0001025"},{"relation_name":"is_a","term_name":"increased object quality","termid":"PATO:0002305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"increased pressure","synonyms":[{"name":"high pressure","type":"exact"}],"termid":"PATO:0001576"}


id: PBO:0027133
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_telomere-nuclear_envelope_distance_during_mitotic_G2_phase","termid":"PBO:0027133"}


id: MONDO:1010538
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Megacolon that occurs in cattle.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"megacolon, non-human animal","termid":"MONDO:1010039"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"megacolon, cattle","secondary_identifiers":["OMIA:000629-9913"],"termid":"MONDO:1010538","xrefs":{"Monarch":{"xref_id":"1010538"}}}


id: GO:0001899
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which an organism stops, prevents, or reduces the frequency, rate or extent of cytolysis by that organism of cells in its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:add","GOC:dph","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of cytolysis by symbiont of host cells (obsolete GO:0001899)","synonyms":[{"name":"down regulation by symbiont of cytolysis of host cells","type":"exact"},{"name":"down-regulation by symbiont of cytolysis of host cells","type":"exact"},{"name":"downregulation by symbiont of cytolysis of host cells","type":"exact"},{"name":"inhibition by symbiont of cytolysis of host cells","type":"narrow"},{"name":"negative regulation by symbiont of cytolysis of host cells","type":"exact"}],"termid":"GO:0001899"}


id: GO:0071001
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A ribonucleoprotein complex that contains the extensively base paired small nuclear RNAs U4 and U6, a heptameric ring of Sm proteins associated with U4, the Lsm2-8 heptameric ring complex associated with U6, as well as several proteins that are unique to the U4 snRNP or U6 snRNPs, some of which remain associated with the U4/U6 snRNA both while the U4 snRNP is free or assembled into a series of spliceosomal complexes.","definition_xrefs":["GOC:mah","ISBN:0879695897","GOC:krc","PMID:14685174"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spliceosomal snRNP complex","termid":"GO:0097525"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005634","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"U4/U6 snRNP","termid":"GO:0071001"}


id: PBO:0051876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"isochorismatase domain containing 1","termid":"PBO:0051876"}


id: MONDO:0001953
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The presence of excessive white blood cells in the urine as determined by urinalysis.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"urinary system disorder","termid":"MONDO:0002118"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyuria","secondary_identifiers":["HP:0012085","DOID:1439","MESH:D011776","icd11.foundation:2000630356","UMLS:C0034359","MEDGEN:11078"],"synonyms":[{"name":"pus cells in urine","type":"exact"},{"name":"pyuria","type":"exact"},{"name":"pyuria (disease)","type":"exact"}],"termid":"MONDO:0001953","xrefs":{"Monarch":{"xref_id":"0001953"}}}


id: GO:0048040
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H+ + UDP-alpha-D-glucuronate = CO2 + UDP-alpha-D-xylose.","definition_xrefs":["EC:4.1.1.35","RHEA:23916"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"UDP-glucuronate decarboxylase activity","secondary_identifiers":["Reactome:R-HSA-8863761","MetaCyc:UDP-GLUCURONATE-DECARBOXYLASE-RXN","KEGG_REACTION:R01384"],"synonyms":[{"name":"UDP-D-glucuronate carboxy-lyase (UDP-D-xylose-forming)","type":"related"},{"name":"UDP-D-glucuronate carboxy-lyase activity","type":"related"},{"name":"UDP-glucuronic acid decarboxylase activity","type":"exact"},{"name":"UDPglucuronate decarboxylase activity","type":"related"},{"name":"uridine-diphosphoglucuronate decarboxylase activity","type":"related"}],"termid":"GO:0048040"}


id: PBO:0054547
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1947","termid":"PBO:0054547"}


id: GO:1904796
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of core promoter binding.","definition_xrefs":["GOC:BHF_telomere","GOC:nc","GOC:TermGenie","GOC:BHF","PMID:22723415","GO_REF:0000059"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of core promoter binding (obsolete GO:1904796)","termid":"GO:1904796"}


id: PBO:0084557
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Membrane anchor subunit of succinate dehydrogenase (SDH); involved in coupling the oxidation of succinate to the transfer of electrons to ubiquinone as part of the TCA cycle and the mitochondrial respiratory chain; has similarity to human SDH subunit D (SDHD), which is implicated in paraganglioma","termid":"PBO:0084557"}


id: PBO:0050636
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HSFY1 pseudogene 1","termid":"PBO:0050636"}


id: PBO:0087424
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit A of the V1 peripheral membrane domain of V-ATPase; protein precursor undergoes self-catalyzed splicing to yield the extein Tfp1p and the intein Vde (PI-SceI), which is a site-specific endonuclease; the V1 peripheral membrane domain of the vacuolar H+-ATPase (V-ATPase) has eight subunits; involved in methionine restriction extension of chronological lifespan in an autophagy-dependent manner","termid":"PBO:0087424"}


id: MONDO:0013482
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Meckel syndrome in which the cause of the disease is a mutation in the TCTN2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Meckel syndrome","termid":"MONDO:0018921"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Meckel syndrome, type 8","secondary_identifiers":["MEDGEN:854220","OMIM:613885","DOID:0070122","UMLS:C3836857","GARD:15727"],"synonyms":[{"name":"MKS8","type":"exact"},{"name":"Meckel syndrome 8","type":"related"},{"name":"Meckel syndrome caused by mutation in TCTN2","type":"exact"},{"name":"Meckel syndrome, type 8","type":"exact"},{"name":"Meckel-Gruber syndrome, type 8","type":"exact"},{"name":"TCTN2 Meckel syndrome","type":"exact"}],"termid":"MONDO:0013482","xrefs":{"Monarch":{"xref_id":"0013482"}}}


id: PBO:0078152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor alpha variable 30","termid":"PBO:0078152"}


id: PBO:0090619
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing factor, xap-5-like protein","termid":"PBO:0090619"}


id: PBO:0049284
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutathione S-transferase alpha 3","termid":"PBO:0049284"}


id: PBO:0002585
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endoplasmic reticulum resident protein required for packaging into COPII vesicles (predicted)","termid":"PBO:0002585"}


id: PBO:0045122
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DMRT like family C2","termid":"PBO:0045122"}


id: MONDO:0014344
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any congenital heart defects, multiple types in which the cause of the disease is a mutation in the NR2F2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"congenital heart defects, multiple types","termid":"MONDO:0000119"},{"relation_name":"is_a","term_name":"familial atrioventricular septal defect","termid":"MONDO:0020290"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"congenital heart defects, multiple types, 4","secondary_identifiers":["MEDGEN:862747","OMIM:615779","UMLS:C4014310"],"synonyms":[{"name":"CHTD4","type":"related"},{"name":"NR2F2 congenital heart defects, multiple types","type":"exact"},{"name":"congenital heart defects, multiple types caused by mutation in NR2F2","type":"exact"},{"name":"congenital heart defects, multiple types, 4","type":"exact"}],"termid":"MONDO:0014344","xrefs":{"Monarch":{"xref_id":"0014344"}}}


id: MONDO:0500018
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare pulmonary disease with histological pattern of interstitial pneumonitis characterized by the deposit of intra-alveolar fibrin and diffuse organizing pneumonia within the alveolar ducts and bronchioles, with large etiological spectra.","definition_xrefs":["PMID:31076239"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pneumonia","termid":"MONDO:0005249"},{"relation_name":"is_a","term_name":"acute disease","termid":"MONDO:0020683"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acute fibrinous and organizing pneumonia","synonyms":[{"name":"AFOP","type":"exact"}],"termid":"MONDO:0500018","xrefs":{"Monarch":{"xref_id":"0500018"}}}


id: GO:0000469
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any phosphodiester bond hydrolysis involved in the conversion of a primary ribosomal RNA (rRNA) transcript into a mature rRNA molecule.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete cleavage involved in rRNA processing (obsolete GO:0000469)","synonyms":[{"name":"cleavage during rRNA processing","type":"related"}],"termid":"GO:0000469"}


id: PBO:0086600
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; expression is increased greatly during sporulation; YEL023C is not an essential gene","termid":"PBO:0086600"}


id: GO:0034156
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of toll-like receptor 7 signaling pathway.","definition_xrefs":["PMID:16551253","GOC:add","PMID:17328678"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of toll-like receptor 7 signaling pathway","termid":"GO:0034155"},{"relation_name":"is_a","term_name":"negative regulation of cytoplasmic pattern recognition receptor signaling pathway","termid":"GO:0039532"},{"relation_name":"negatively_regulates","term_name":"toll-like receptor 7 signaling pathway","termid":"GO:0034154"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of toll-like receptor 7 signaling pathway","synonyms":[{"name":"negative regulation of TLR7 signaling pathway","type":"exact"},{"name":"negative regulation of toll-like receptor 7 signalling pathway","type":"exact"}],"termid":"GO:0034156"}


id: PR:O74855
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A notchless protein homolog 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR19848:SF0","OMA:SCHPO04884"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosome assembly protein 4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC18.05c","secondary_identifiers":["UniProtKB:O74855"],"synonyms":[{"name":"Spom972h-NLE1","type":"exact"},{"name":"notchless protein homolog 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ribosome biogenesis factor rsa4 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74855"}


id: MONDO:0032604
data:
  {"annotated_genes":["SJAG_01152"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88074],"is_not":false,"summary":null,"term":"MONDO:0032604"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"retinitis pigmentosa","termid":"MONDO:0019200"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01152":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0005066","MONDO:0004736"],"is_obsolete":false,"name":"retinitis pigmentosa 84","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C4748725","MEDGEN:1648352","DOID:0112141","OMIM:618220","GARD:16311"],"synonyms":[{"name":"RETINITIS PIGMENTOSA 84","type":"related"},{"name":"RP84","type":"related"}],"termid":"MONDO:0032604","terms_by_termid":{"MONDO:0032604":null},"xrefs":{"Monarch":{"xref_id":"0032604"}}}


id: PBO:0047469
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Fc receptor like B","termid":"PBO:0047469"}


id: PBO:0075799
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SS18 like 2","termid":"PBO:0075799"}


id: PBO:0039346
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-methylacyl-CoA racemase","termid":"PBO:0039346"}


id: MONDO:0009538
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lymphoid system deterioration, progressive","secondary_identifiers":["OMIM:247630","UMLS:C1855473","MESH:C565430","MEDGEN:340880"],"synonyms":[{"name":"lymphoid system deterioration, progressive","type":"exact"}],"termid":"MONDO:0009538","xrefs":{"Monarch":{"xref_id":"0009538"}}}


id: PBO:0051968
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"isovaleryl-CoA dehydrogenase","termid":"PBO:0051968"}


id: MONDO:0006745
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant mesenchymal neoplasm that affects the uterine corpus, and rarely, the ovaries, cervix, and vagina. In the uterine corpus it is classified as low grade or high grade endometrial stromal sarcoma. In the remainder of the anatomic sites it is classified as low grade endometrioid stromal sarcoma.","definition_xrefs":["NCIT:C8973"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete rare cancer of corpus uteri (obsolete MONDO:0016253)","termid":"MONDO:0016253"},{"relation_name":"is_a","term_name":"endometrial stromal tumor","termid":"MONDO:0003311"},{"relation_name":"is_a","term_name":"sarcoma","termid":"MONDO:0005089"},{"relation_name":"is_a","term_name":"endometrial cancer","termid":"MONDO:0011962"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"endometrioid stromal sarcoma","secondary_identifiers":["MEDGEN:60196","Orphanet:213711","SCTID:699356008","MESH:D018203","ONCOTREE:ESS","EFO:1000919","UMLS:C0206630","NORD:1086","DOID:4226","ICDO:8930/3","GARD:6339","MedDRA:10048397","MedDRA:10057649"],"synonyms":[{"name":"ESS","type":"exact"},{"name":"Empty Sella Syndrome","type":"exact"},{"name":"endometrial stromal sarcoma","type":"exact"},{"name":"endometrial stromal sarcoma, high grade","type":"exact"},{"name":"endometrial stromal sarcomas","type":"exact"},{"name":"endometrioid stromal sarcoma","type":"exact"},{"name":"ess","type":"exact"},{"name":"sarcomas, endometrial stromal","type":"exact"},{"name":"stromal sarcoma of the corpus uteri","type":"exact"},{"name":"stromal sarcoma, endometrial","type":"exact"},{"name":"stromal sarcoma, endometrial, malignant","type":"exact"},{"name":"stromal sarcomas, endometrial","type":"exact"},{"name":"undifferentiated endometrial sarcoma","type":"exact"}],"termid":"MONDO:0006745","xrefs":{"Monarch":{"xref_id":"0006745"}}}


id: PBO:0079793
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UDP glucuronosyltransferase family 2 member A1 complex locus","termid":"PBO:0079793"}


id: MONDO:0016250
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Any of the forms of breast adenocarcinoma that have a rare incidence.","definition_xrefs":["MONDO:patterns/rare"],"gene_count":0,"genotype_count":0,"name":"obsolete rare adenocarcinoma of the breast (obsolete MONDO:0016250)","secondary_identifiers":["ICD10CM:C50.3","ICD10CM:C50.6","ICD10CM:C50.2","Orphanet:213528"],"synonyms":[{"name":"rare breast adenocarcinoma","type":"exact"}],"termid":"MONDO:0016250","xrefs":{"Monarch":{"xref_id":"0016250"}}}


id: FYPO:0004770
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of L-glutamine measured in the vacuole is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of substance in vacuole","termid":"FYPO:0001730"},{"relation_name":"is_a","term_name":"increased cellular glutamine level","termid":"FYPO:0006955"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased vacuolar glutamine level","synonyms":[{"name":"increased level of glutamine in vacuole","type":"exact"},{"name":"increased vacuolar L-glutamine level","type":"exact"},{"name":"increased vacuolar glutamine level during mitotic cell cycle","type":"related"},{"name":"increased vacuolar glutamine level during vegetative growth","type":"exact"}],"termid":"FYPO:0004770"}


id: GO:0003311
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which relatively unspecialized cells acquire specialized structural and functional features that characterize a pancreatic delta cell. A delta cell is a cell of the pancreas that produces somatostatin.","definition_xrefs":["GOC:dph","PMID:11076772"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enteroendocrine cell differentiation","termid":"GO:0035883"},{"relation_name":"is_a","term_name":"neuroendocrine cell differentiation","termid":"GO:0061101"},{"relation_name":"part_of","term_name":"endocrine pancreas development","termid":"GO:0031018"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pancreatic D cell differentiation","synonyms":[{"name":"pancreatic delta cell differentiation","type":"exact"}],"termid":"GO:0003311"}


id: PR:O74803
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A UV excision repair protein RAD23 homolog B that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UV excision repair protein rhp23 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC2D10.12","secondary_identifiers":["UniProtKB:O74803"],"synonyms":[{"name":"RAD23 homolog (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"SPBC2D10.12","type":"related"},{"name":"Spom972h-RAD23B","type":"exact"}],"termid":"PR:O74803"}


id: PBO:0080879
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"yippee like 4","termid":"PBO:0080879"}


id: MONDO:0007860
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Focal palmoplantar and gingival keratoderma is a very rare form of focal palmoplantar keratoderma characterized by painful circumscribed hyperkeratotic lesions on weight-bearing areas of soles, moderate focal hyperkeratosis of palmar pressure-related areas and an asymptomatic leukokeratosis confined to labial- and lingual- attached gingiva. Additional occasional features may include hyperhidrosis, follicular keratosis and extended oral mucosa involvement.","definition_xrefs":["Orphanet:2200"],"direct_ancestors":[{"relation_name":"is_a","term_name":"focal palmoplantar keratoderma","termid":"MONDO:0017672"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"focal palmoplantar and gingival keratoderma","secondary_identifiers":["UMLS:C1835650","OMIM:148730","SCTID:764963007","MEDGEN:372097","MESH:C536157","DOID:0070553","GARD:3098"],"synonyms":[{"name":"focal palmoplantar and gingival hyperkeratosis","type":"exact"},{"name":"focal palmoplantar and gingival hyperkeratosis syndrome","type":"related"},{"name":"focal palmoplantar and oral mucosa hyperkeratosis","type":"related"},{"name":"keratosis focal palmoplantar gingival","type":"related"},{"name":"keratosis, focal palmoplantar and gingival","type":"related"}],"termid":"MONDO:0007860","xrefs":{"Monarch":{"xref_id":"0007860"}}}


id: FYECO:0000322
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which bortezomib was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ bortezomib","termid":"FYECO:0000322"}


id: PBO:0028290
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_vacuolar_phytochelatin_level","termid":"PBO:0028290"}


id: GO:1900046
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of hemostasis.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of biological process","termid":"GO:0050789"},{"relation_name":"is_a","term_name":"regulation of body fluid levels","termid":"GO:0050878"},{"relation_name":"regulates","term_name":"hemostasis","termid":"GO:0007599"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of hemostasis","termid":"GO:1900046"}


id: GO:1901705
data:
  {"annotated_genes":["SJAG_00830","SJAG_04098","SJAG_00107","SJAG_00396","SJAG_03985","SJAG_04149","SJAG_06635"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[92531,105215,105699,110278,112408,113078,115243],"is_not":false,"summary":null,"term":"GO:1901705"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of L-isoleucine.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aspartate family amino acid biosynthetic process","termid":"GO:0009067"},{"relation_name":"is_a","term_name":"isoleucine biosynthetic process","termid":"GO:0009097"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00107":null,"SJAG_00396":null,"SJAG_00830":null,"SJAG_03985":null,"SJAG_04098":null,"SJAG_04149":null,"SJAG_06635":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"L-isoleucine biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"L-isoleucine anabolism","type":"exact"},{"name":"L-isoleucine biosynthesis","type":"exact"},{"name":"L-isoleucine formation","type":"exact"},{"name":"L-isoleucine synthesis","type":"exact"}],"termid":"GO:1901705","terms_by_termid":{"GO:1901705":null}}


id: MONDO:1011002
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Syringomyelia that occurs in rabbit.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syringomyelia, non-human animal","termid":"MONDO:1010236"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syringomyelia, rabbit","secondary_identifiers":["OMIA:000965-9986"],"termid":"MONDO:1011002","xrefs":{"Monarch":{"xref_id":"1011002"}}}


id: MONDO:0958023
data:
  {"annotated_genes":["SJAG_00946"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87946],"is_not":false,"summary":null,"term":"MONDO:0958023"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital generalized lipodystrophy","termid":"MONDO:0006536"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00946":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0005093"],"is_obsolete":false,"name":"lipodystrophy, congenital generalized, type 5","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5882745","MEDGEN:1847991","OMIM:620680"],"termid":"MONDO:0958023","terms_by_termid":{"MONDO:0958023":null},"xrefs":{"Monarch":{"xref_id":"0958023"}}}


id: MONDO:0016905
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Chromosome 6q deletion is a chromosome abnormality that occurs when there is a missing copy of the genetic material located on the long arm (q) of chromosome 6. The severity of the condition and the signs and symptoms depend on the size and location of the deletion and which genes are involved. Features that often occur in people with chromosome 6q deletion include developmental delay, intellectual disability, and distinctive facial features. Most cases are not inherited, but people can pass the deletion on to their children. Treatment is based on the signs and symptoms present in each person.","definition_xrefs":["GARD:0003760"],"direct_ancestors":[{"relation_name":"is_a","term_name":"partial deletion of chromosome 6","termid":"MONDO:0016871"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"partial deletion of the long arm of chromosome 6","secondary_identifiers":["MEDGEN:162772","UMLS:C0795816","icd11.foundation:41692353","Orphanet:262047","MESH:C537807","GARD:3760"],"synonyms":[{"name":"6q deletion","type":"related"},{"name":"6q monosomy","type":"related"},{"name":"chromosome 6q deletion","type":"related"},{"name":"deletion 6q","type":"related"},{"name":"monosomy 6q","type":"related"},{"name":"partial deletion of chromosome 6q","type":"exact"},{"name":"partial deletion of the long arm of chromosome type 6","type":"exact"},{"name":"partial monosomy 6q","type":"related"},{"name":"partial monosomy of chromosome 6q","type":"exact"},{"name":"partial monosomy of the long arm of chromosome 6","type":"exact"}],"termid":"MONDO:0016905","xrefs":{"Monarch":{"xref_id":"0016905"}}}


id: MOD:00969
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from DeltaMass","definition_xrefs":["DeltaMass:346"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DeltaMass","termid":"MOD:00947"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CAM-Cys vs PAM-Cys","termid":"MOD:00969"}


id: MONDO:0016712
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Classic medulloblastoma is a histological variant of medulloblastoma, an embryonic malignancy, having a midline location, occurring most often in children and manifesting with variable symptoms such as headaches, nausea, vomiting and ataxia.","definition_xrefs":["Orphanet:251867"],"direct_ancestors":[{"relation_name":"is_a","term_name":"medulloblastoma","termid":"MONDO:0007959"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"classic medulloblastoma","secondary_identifiers":["NCIT:C54039","SCTID:699704002","UMLS:C1707400","icd11.foundation:1548011794","GARD:17216","MEDGEN:353541"],"synonyms":[{"name":"classic medulloblastoma","type":"exact"}],"termid":"MONDO:0016712","xrefs":{"Monarch":{"xref_id":"0016712"}}}


id: PBO:0071199
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L23a pseudogene 40","termid":"PBO:0071199"}


id: GO:0004677
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"DNA dependent catalysis of the reaction: ATP + a protein = ADP + a phosphoprotein.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein serine/threonine kinase activity","termid":"GO:0004674"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0004672"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016301"}],"interesting_parent_ids":["GO:0016301","GO:0140096","GO:0004672","GO:0016740","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"DNA-dependent protein kinase activity","termid":"GO:0004677"}


id: GO:1902677
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Any ciliary basal body that is part of a left caudal flagellum found in Giardia species (trophozoite stage).","definition_xrefs":["PMID:16607022","GO_REF:0000064","GOC:TermGenie","ISBN:9780124260207","GOC:giardia","PMID:5961344"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ciliary basal body","termid":"GO:0036064"},{"relation_name":"part_of","term_name":"left caudal flagellum","termid":"GO:0097560"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0015630"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0015630"],"is_obsolete":false,"name":"left caudal basal body","synonyms":[{"name":"cilial basal body of left caudal cilium","type":"exact"},{"name":"cilial basal body of left caudal flagellum","type":"exact"},{"name":"ciliary basal body of left caudal cilium","type":"exact"},{"name":"ciliary basal body of left caudal flagellum","type":"exact"},{"name":"cilium basal body of left caudal cilium","type":"exact"},{"name":"cilium basal body of left caudal flagellum","type":"exact"},{"name":"left caudal flagellum ciliary basal body","type":"exact"},{"name":"microtubule basal body of left caudal cilium","type":"exact"},{"name":"microtubule basal body of left caudal flagellum","type":"exact"}],"termid":"GO:1902677"}


id: MONDO:0014185
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"3q13 microdeletion syndrome is a rare chromosomal anomaly syndrome resulting from a partial deletion of the long arm of chromosome 3. Phenotype can be highly variable, but it is primarily characterized by significant developmental delay, postnatal growth above the mean, muscular hypotonia and distinctive facial features (such as broad and prominent forehead, hypertelorism, epicantic folds, anti-mongloid slanted eyes, ptosis, short philtrum, protruding lips with a full lower lip, high arched palate). Abnormal hypoplastic male genitalia and skeletal abnormalities are frequently present.","definition_xrefs":["Orphanet:1621"],"direct_ancestors":[{"relation_name":"is_a","term_name":"partial deletion of the long arm of chromosome 3","termid":"MONDO:0016902"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 3q13.31 deletion syndrome","secondary_identifiers":["MESH:C536808","SCTID:726705007","OMIM:615433","GARD:16573","UMLS:C3809490","DOID:0060418","MEDGEN:815820"],"synonyms":[{"name":"3q13 microdeletion syndrome","type":"exact"},{"name":"Del(3)(q13)","type":"exact"},{"name":"chromosome 3q13.31 deletion syndrome","type":"exact"},{"name":"monosomy 3q13","type":"exact"}],"termid":"MONDO:0014185","xrefs":{"Monarch":{"xref_id":"0014185"}}}


id: PBO:0110322
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP binding cassette subfamily C member 4 (PEL blood group)","termid":"PBO:0110322"}


id: GO:0047008
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: NADP+ + pregnan-21-ol = H+ + NADPH + pregnan-21-al.","definition_xrefs":["RHEA:23712"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0033764"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"pregnan-21-ol dehydrogenase (NADP+) activity","secondary_identifiers":["KEGG_REACTION:R03044","MetaCyc:1.1.1.151-RXN","EC:1.1.1.151"],"synonyms":[{"name":"21-hydroxy steroid (nicotinamide adenine dinucleotide phosphate) dehydrogenase activity","type":"broad"},{"name":"21-hydroxy steroid dehydrogenase (nicotinamide adenine dinucleotide phosphate) activity","type":"broad"},{"name":"21-hydroxy steroid dehydrogenase activity","type":"broad"},{"name":"21-hydroxysteroid dehydrogenase (NADP+) activity","type":"broad"},{"name":"21-hydroxysteroid:NADP+ 21-oxidoreductase activity","type":"broad"},{"name":"NADP-21-hydroxysteroid dehydrogenase activity","type":"broad"}],"termid":"GO:0047008"}


id: PBO:0051128
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin heavy variable 2-5","termid":"PBO:0051128"}


id: PBO:0048694
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GLIS2 antisense RNA 1","termid":"PBO:0048694"}


id: PR:000044798
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A cell division control protein 42 that is encoded in the genome of Schizosaccharomyces pombe.","definition_xrefs":["PRO:DAN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein","termid":"PR:000000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell division control protein 42 (Schizosaccharomyces pombe)","pombase_gene_id":"SPAC110.03","synonyms":[{"name":"SPAC110.03","type":"related"},{"name":"Spom-cdc2","type":"exact"}],"termid":"PR:000044798"}


id: PATO:0001512
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A pattern inhering in a surface by virtue of the bearer's being marked by the presence of dots, punctures, points or pits.","definition_xrefs":["medical-dictionary:medical-dictionary"],"direct_ancestors":[{"relation_name":"is_a","term_name":"irregular spatial pattern","termid":"PATO:0000330"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"punctate","synonyms":[{"name":"dotted","type":"related"},{"name":"spotted","type":"related"},{"name":"stippled","type":"related"}],"termid":"PATO:0001512"}


id: MONDO:0016423
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"autoimmune polyendocrinopathy","termid":"MONDO:0017278"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"autoimmune polyendocrinopathy type 4","secondary_identifiers":["icd11.foundation:1561026337","Orphanet:227990","UMLS:C3266026","SCTID:449730005","ICD9:258.1","MEDGEN:757804","GARD:20567"],"synonyms":[{"name":"APS type 4","type":"exact"},{"name":"APS4","type":"exact"},{"name":"autoimmune polyendocrine syndrome type 4","type":"exact"},{"name":"autoimmune polyglandular syndrome type 4","type":"exact"}],"termid":"MONDO:0016423","xrefs":{"Monarch":{"xref_id":"0016423"}}}


id: PBO:0030084
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_protein_localization_to_cell_tip","termid":"PBO:0030084"}


id: PBO:0026843
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_DNA_binding_at_PCB","termid":"PBO:0026843"}


id: PBO:0077477
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 199","termid":"PBO:0077477"}


id: GO:0009694
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving jasmonic acid, a fatty acid derivative with the formula (1R-(1 alpha, 2 beta(Z)))-3-oxo-2-(2-pentenyl)cyclopentaneacetic acid.","definition_xrefs":["ISBN:0387969845"],"direct_ancestors":[{"relation_name":"is_a","term_name":"long-chain fatty acid metabolic process","termid":"GO:0001676"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044281","GO:0006629","GO:0008150"],"is_obsolete":false,"name":"jasmonic acid metabolic process","synonyms":[{"name":"jasmonic acid metabolism","type":"exact"}],"termid":"GO:0009694"}


id: MONDO:0008902
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"camptodactyly-ichthyosis syndrome","secondary_identifiers":["MESH:C537976","OMIM:211965","UMLS:C1859355","MEDGEN:347130"],"synonyms":[{"name":"camptodactyly ichthyosis syndrome","type":"related"},{"name":"camptodactyly-ichthyosis syndrome","type":"exact"}],"termid":"MONDO:0008902","xrefs":{"Monarch":{"xref_id":"0008902"}}}


id: PBO:0071026
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 28","termid":"PBO:0071026"}


id: PBO:0049243
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gastrin releasing peptide","termid":"PBO:0049243"}


id: PBO:0078327
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell receptor delta variable 2","termid":"PBO:0078327"}


id: PBO:0087323
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"snRNP protein component of spliceosomal snRNPs; required for pre-mRNA splicing and snRNP biogenesis; in null mutant newly-synthesized snRNAs are destabilized and 3'-end processing is slowed","termid":"PBO:0087323"}


id: MONDO:0012622
data:
  {"annotated_genes":["SJAG_04094"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88750],"is_not":false,"summary":null,"term":"MONDO:0012622"}]},"cv_name":"mondo","definition":"This disease is characterized by progressive cerebellar ataxia with pyramidal and spinal cord dysfunction, associated with distinctive MRI anomalies and increased lactate in the abnormal white matter.","definition_xrefs":["Orphanet:137898"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mitochondrial oxidative phosphorylation disorder","termid":"MONDO:0016387"},{"relation_name":"is_a","term_name":"leukodystrophy","termid":"MONDO:0019046"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04094":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0005559","MONDO:0004069"],"is_obsolete":false,"name":"leukoencephalopathy with brain stem and spinal cord involvement-high lactate syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:370845","MESH:C567009","SCTID:703537008","NORD:1941","UMLS:C1970180","GARD:12652","OMIM:611105"],"synonyms":[{"name":"LBSL","type":"exact"},{"name":"Leukoencephalopathy with Brain Stem and Spinal Cord Involvement and Lactate Elevation","type":"exact"},{"name":"leukoencephalopathy with brain stem and spinal cord involvement - high lactate","type":"related"},{"name":"leukoencephalopathy with brain stem and spinal cord involvement - lactate elevation","type":"related"},{"name":"leukoencephalopathy with brain stem and spinal cord involvement and lactate elevation","type":"related"},{"name":"leukoencephalopathy with brain stem and spinal cord involvement-high lactate syndrome","type":"exact"},{"name":"leukoencephalopathy with brain stem and spinal cord involvement-lactate elevation syndrome","type":"exact"},{"name":"leukoencephalopathy with brainstem and spinal cord involvement and lactate elevation","type":"related"},{"name":"mitochondrial aspartyl-tRNA synthetase deficiency","type":"related"}],"termid":"MONDO:0012622","terms_by_termid":{"MONDO:0012622":null},"xrefs":{"Monarch":{"xref_id":"0012622"}}}


id: PBO:0087200
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Saccharopine dehydrogenase (NADP+, L-glutamate-forming); catalyzes the formation of saccharopine from alpha-aminoadipate 6-semialdehyde, the seventh step in lysine biosynthesis pathway; exhibits genetic and physical interactions with TRM112","termid":"PBO:0087200"}


id: GO:0072030
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a short nephron over time, from its formation to the mature structure. Short nephrons are associated with mid-cortical and superficial glomeruli, are situated entirely in the outer medulla, and have no thin ascending limb.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephron development","termid":"GO:0072006"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"short nephron development","termid":"GO:0072030"}


id: GO:0048146
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of multiplication or reproduction of fibroblast cells.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of cell population proliferation","termid":"GO:0008284"},{"relation_name":"is_a","term_name":"regulation of fibroblast proliferation","termid":"GO:0048145"},{"relation_name":"positively_regulates","term_name":"fibroblast proliferation","termid":"GO:0048144"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of fibroblast proliferation","synonyms":[{"name":"activation of fibroblast proliferation","type":"narrow"},{"name":"stimulation of fibroblast proliferation","type":"narrow"},{"name":"up regulation of fibroblast proliferation","type":"exact"},{"name":"up-regulation of fibroblast proliferation","type":"exact"},{"name":"upregulation of fibroblast proliferation","type":"exact"}],"termid":"GO:0048146"}


id: PBO:0000488
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi localized Arf binding gamma-adaptin ortholog (predicted)","termid":"PBO:0000488"}


id: MONDO:0019327
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"phakomatosis pigmentovascularis","termid":"MONDO:0017318"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0005328"],"is_obsolete":false,"name":"phakomatosis spilorosea","secondary_identifiers":["SCTID:703285005","UMLS:C3839763","GARD:19025","icd11.foundation:1064958823","ICD9:759.6","MEDGEN:825608","Orphanet:79485"],"synonyms":[{"name":"phakomatosis pigmentovascularis type 3","type":"exact"}],"termid":"MONDO:0019327","xrefs":{"Monarch":{"xref_id":"0019327"}}}


id: PBO:0073087
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SDHA pseudogene 3","termid":"PBO:0073087"}


id: PBO:0046641
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group W member 22","termid":"PBO:0046641"}


id: PBO:0048112
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FUN14 domain containing 2","termid":"PBO:0048112"}


id: FYECO:0000134
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"The assay, or growth of cells, was conducted under strict anaerobic conditions.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping experimental environment","termid":"FYECO:0000132"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anaerobic environment","synonyms":[{"name":"- O","type":"exact"},{"name":"- oxygen","type":"exact"},{"name":"-O","type":"exact"},{"name":"-oxygen","type":"exact"},{"name":"anaerobiosis","type":"exact"},{"name":"minus oxygen","type":"exact"}],"termid":"FYECO:0000134"}


id: PBO:0038296
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase feature property types","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"community_curated","termid":"PBO:0038296"}


id: PBO:0067731
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 29","termid":"PBO:0067731"}


id: PATO:0000302
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000302 relative speed value (obsolete PATO:0000302)","termid":"PATO:0000302"}


id: PBO:0013071
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ataxia-Two Homolog","termid":"PBO:0013071"}


id: PBO:0113036
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cell wall mannoprotein that localizes to birth scars of daughter cells; linked to beta-1,3- and beta-1,6-glucan heteropolymer through phosphodiester bond; required for propionic acid resistance; targeted to vacuole via AP-3 pathway","termid":"PBO:0113036"}


id: GO:0016901
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces a quinone or a similar acceptor molecule.","definition_xrefs":["EC:1.1.5.-","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on CH-OH group of donors","termid":"GO:0016614"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor","termid":"GO:0016901"}


id: GO:0032873
data:
  {"annotated_genes":["SJAG_04522","SJAG_02392","SJAG_01114","SJAG_03263","SJAG_04825","SJAG_05000"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[108993,105724,101337,109563,120346,97732],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903138"}]},"cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction mediated by the stress-activated MAPK cascade.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of stress-activated MAPK cascade","termid":"GO:0032872"},{"relation_name":"is_a","term_name":"negative regulation of MAPK cascade","termid":"GO:0043409"},{"relation_name":"is_a","term_name":"negative regulation of stress-activated protein kinase signaling cascade","termid":"GO:0070303"},{"relation_name":"negatively_regulates","term_name":"stress-activated MAPK cascade","termid":"GO:0051403"}],"gene_count":6,"genes_by_uniquename":{"SJAG_01114":null,"SJAG_02392":null,"SJAG_03263":null,"SJAG_04522":null,"SJAG_04825":null,"SJAG_05000":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of stress-activated MAPK cascade","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"down regulation of stress-activated MAPK cascade","type":"exact"},{"name":"down-regulation of stress-activated MAPK cascade","type":"exact"},{"name":"downregulation of stress-activated MAPK cascade","type":"exact"},{"name":"inhibition of stress-activated MAPK cascade","type":"narrow"},{"name":"negative regulation of p38 MAPK signaling","type":"exact"},{"name":"negative regulation of p38 MAPK signalling","type":"exact"},{"name":"negative regulation of stress-activated MAPK signaling pathway","type":"exact"},{"name":"negative regulation of stress-activated MAPK signalling pathway","type":"exact"},{"name":"negative regulation of stress-activated MAPKKK cascade","type":"exact"},{"name":"negative regulation of stress-activated MAPKKK signaling pathway","type":"exact"},{"name":"negative regulation of stress-activated MAPKKK signalling pathway","type":"exact"}],"termid":"GO:0032873","terms_by_termid":{"GO:1903138":null}}


id: PBO:0078676
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Lys (TTT) 9-1","termid":"PBO:0078676"}


id: PBO:0015245
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BAG family molecular chaperone regulator Bag102","termid":"PBO:0015245"}


id: FYPO:0001756
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of protein phosphatase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal phosphatase activity","termid":"FYPO:0004302"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000652","FYPO:0000661","FYPO:0001985","FYPO:0000707"],"is_obsolete":false,"name":"abnormal protein phosphatase activity","synonyms":[{"name":"abnormal phosphoprotein phosphatase activity","type":"exact"}],"termid":"FYPO:0001756"}


id: MONDO:0800134
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An immunodeficiency disease caused by a variation in the CRACR2A gene.","definition_xrefs":["PMID:34908525","PMID:35151051"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immunodeficiency disease","termid":"MONDO:0021094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"primary immunodeficiency due to calcium channel deficiency","termid":"MONDO:0800134","xrefs":{"Monarch":{"xref_id":"0800134"}}}


id: PATO:0002078
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a bearer by virtue of the bearer's having an empty space or cavity within.","direct_ancestors":[{"relation_name":"is_a","term_name":"structure, cavities","termid":"PATO:0002014"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hollow","termid":"PATO:0002078"}


id: GO:1902253
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of intrinsic apoptotic signaling pathway by p53 class mediator.","definition_xrefs":["GOC:mtg_apoptosis","GOC:rl","GOC:TermGenie","GOC:BHF","PMID:15705871"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of signal transduction by p53 class mediator","termid":"GO:1901796"},{"relation_name":"is_a","term_name":"regulation of intrinsic apoptotic signaling pathway","termid":"GO:2001242"},{"relation_name":"regulates","term_name":"intrinsic apoptotic signaling pathway by p53 class mediator","termid":"GO:0072332"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"regulation of intrinsic apoptotic signaling pathway by p53 class mediator","synonyms":[{"name":"regulation of intrinsic apoptotic signaling pathway by signal transduction by p53 class mediator","type":"exact"},{"name":"regulation of signal transduction by p53 class mediator resulting in induction of apoptosis","type":"related"}],"termid":"GO:1902253"}


id: PBO:0044197
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cathepsin F","termid":"PBO:0044197"}


id: MONDO:0003455
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A non-invasive, papillary epithelial neoplasm that arises from the epithelium of the intrahepatic or extrahepatic bile ducts.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"benign digestive system neoplasm","termid":"MONDO:0000385"},{"relation_name":"is_a","term_name":"benign endocrine neoplasm","termid":"MONDO:0000627"},{"relation_name":"is_a","term_name":"intraductal papilloma","termid":"MONDO:0002060"},{"relation_name":"is_a","term_name":"bile duct neoplasm","termid":"MONDO:0021662"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0002515"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0002515"],"is_obsolete":false,"name":"bile duct papillary neoplasm","secondary_identifiers":["MEDGEN:360303","NCIT:C6881","UMLS:C1879344","DOID:5468","ICDO:8503/0"],"synonyms":[{"name":"IPN","type":"exact"},{"name":"bile duct papillary epithelial neoplasm","type":"exact"},{"name":"bile duct papillary neoplasm","type":"exact"},{"name":"bile duct papillomatosis","type":"exact"},{"name":"biliary papillomatosis","type":"exact"},{"name":"intraductal papillary neoplasm","type":"exact"}],"termid":"MONDO:0003455","xrefs":{"Monarch":{"xref_id":"0003455"}}}


id: GO:0043323
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of natural killer cell degranulation.","definition_xrefs":["ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of leukocyte degranulation","termid":"GO:0043302"},{"relation_name":"is_a","term_name":"regulation of natural killer cell degranulation","termid":"GO:0043321"},{"relation_name":"is_a","term_name":"positive regulation of natural killer cell mediated cytotoxicity","termid":"GO:0045954"},{"relation_name":"positively_regulates","term_name":"natural killer cell degranulation","termid":"GO:0043320"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"positively_regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0016192"],"is_obsolete":false,"name":"positive regulation of natural killer cell degranulation","synonyms":[{"name":"activation of natural killer cell degranulation","type":"narrow"},{"name":"positive regulation of NK cell degranulation","type":"exact"},{"name":"positive regulation of NK cell granule exocytosis","type":"exact"},{"name":"positive regulation of natural killer cell granule exocytosis","type":"exact"},{"name":"stimulation of natural killer cell degranulation","type":"narrow"},{"name":"up regulation of natural killer cell degranulation","type":"exact"},{"name":"up-regulation of natural killer cell degranulation","type":"exact"},{"name":"upregulation of natural killer cell degranulation","type":"exact"}],"termid":"GO:0043323"}


id: PBO:0088088
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UDP-glucose:dolichyl-phosphate glucosyltransferase; involved in asparagine-linked glycosylation in the endoplasmic reticulum; human ortholog ALG5 can partially complement yeast alg5 mutant","termid":"PBO:0088088"}


id: PR:O94443
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC637.09 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94443"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized exonuclease C637.09 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC637.09","synonyms":[{"name":"Spom972h-SPAC637.09","type":"exact"}],"termid":"PR:O94443"}


id: MONDO:0006056
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare carcinoma that arises from the breast parenchyma and is entirely composed of squamous cells.","definition_xrefs":["NCIT:C5177"],"direct_ancestors":[{"relation_name":"is_a","term_name":"squamous cell carcinoma","termid":"MONDO:0005096"},{"relation_name":"is_a","term_name":"metaplastic breast carcinoma","termid":"MONDO:0006043"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"squamous cell breast carcinoma","secondary_identifiers":["UMLS:C1336079","ONCOTREE:MSCC","MEDGEN:233465","EFO:1000053","DOID:5514"],"synonyms":[{"name":"breast primary squamous cell carcinoma","type":"exact"},{"name":"breast squamous cell carcinoma","type":"exact"},{"name":"metaplastic squamous cell carcinoma","type":"related"},{"name":"primary squamous cell breast carcinoma","type":"exact"},{"name":"primary squamous cell carcinoma of breast","type":"exact"},{"name":"primary squamous cell carcinoma of the breast","type":"exact"},{"name":"scc of breast","type":"exact"},{"name":"scc of the breast","type":"exact"},{"name":"squamous breast carcinoma","type":"exact"},{"name":"squamous carcinoma of breast","type":"exact"},{"name":"squamous carcinoma of the breast","type":"exact"},{"name":"squamous cell breast carcinoma","type":"exact"},{"name":"squamous cell carcinoma of breast","type":"exact"},{"name":"squamous cell carcinoma of the breast","type":"exact"}],"termid":"MONDO:0006056","xrefs":{"Monarch":{"xref_id":"0006056"}}}


id: MONDO:0019727
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Type III mixed cryoglobulinemia, a relatively rare clinico-serological subtype of mixed cryoglobulinemia (MC), is an immune complex disorder characterized by purpura, weakness and arthralgia and defined immunochemically by cryoglobulins containing both polyclonal IgGs and polyclonal IgMs.","definition_xrefs":["Orphanet:93555"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Cryoglobulinemic vasculitis","termid":"MONDO:0007407"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mixed cryoglobulinemia type III","secondary_identifiers":["MEDGEN:1843066","UMLS:C5680263","GARD:19221","ICD10CM:D89.1"],"synonyms":[{"name":"MC type III","type":"exact"}],"termid":"MONDO:0019727","xrefs":{"Monarch":{"xref_id":"0019727"}}}


id: GO:0045290
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-arabinose + NAD(P)+ = D-arabinono-1,4-lactone + NAD(P)H + H+.","definition_xrefs":["EC:1.1.1.117"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"D-arabinose 1-dehydrogenase [NAD(P)+] activity","secondary_identifiers":["MetaCyc:1.1.1.117-RXN"],"synonyms":[{"name":"D-arabinose:NAD(P)+ 1-oxidoreductase activity","type":"related"}],"termid":"GO:0045290"}


id: PBO:0083151
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; almost completely overlaps ORF RAV2/YDR202C","termid":"PBO:0083151"}


id: PBO:0052388
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kinesin family member 26B","termid":"PBO:0052388"}


id: PBO:0087748
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the THO complex; THO is a nuclear complex comprised of Hpr1p, Mft1p, Rlr1p, and Thp2p, that is involved in transcription elongation and mitotic recombination; involved in telomere maintenance","termid":"PBO:0087748"}


id: PBO:0047216
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 223 member B","termid":"PBO:0047216"}


id: PBO:0072395
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S27 like","termid":"PBO:0072395"}


id: SO:0000209
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A primary transcript encoding a ribosomal RNA.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nc_primary_transcript","termid":"SO:0000483"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rRNA_primary_transcript","synonyms":[{"name":"rRNA primary transcript","type":"exact"},{"name":"ribosomal RNA primary transcript","type":"exact"}],"termid":"SO:0000209"}


id: FYPO:0000197
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which horsetail movement is abnormal. Horsetail movement is the oscillatory movement of the nucleus that takes place during meiotic prophase I.","definition_xrefs":["GO:0030989","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal nucleus positioning","termid":"FYPO:0000517"},{"relation_name":"is_a","term_name":"abnormal transport","termid":"FYPO:0001720"},{"relation_name":"is_a","term_name":"abnormal meiosis I","termid":"FYPO:0003603"},{"relation_name":"is_a","term_name":"abnormal microtubule-based movement","termid":"FYPO:0007163"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000631","FYPO:0001985","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"abnormal horsetail movement","synonyms":[{"name":"abnormal dynein-driven meiotic oscillatory nuclear movement","type":"exact"},{"name":"abnormal horsetail nuclear movement","type":"exact"}],"termid":"FYPO:0000197"}


id: PATO:0000778
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000778 short term memory value (obsolete PATO:0000778)","termid":"PATO:0000778"}


id: GO:2000233
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of rRNA processing.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of gene expression","termid":"GO:0010629"},{"relation_name":"is_a","term_name":"negative regulation of RNA metabolic process","termid":"GO:0051253"},{"relation_name":"is_a","term_name":"negative regulation of ribosome biogenesis","termid":"GO:0090071"},{"relation_name":"is_a","term_name":"regulation of rRNA processing","termid":"GO:2000232"},{"relation_name":"negatively_regulates","term_name":"rRNA processing","termid":"GO:0006364"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0042254"},{"rel_name":"regulates","termid":"GO:0044085"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0042254"},{"rel_name":"negatively_regulates","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0008150","GO:0042254","GO:0010467"],"is_obsolete":false,"name":"negative regulation of rRNA processing","synonyms":[{"name":"negative regulation of 35S primary transcript processing","type":"related"}],"termid":"GO:2000233"}


id: GO:1905259
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of intrinsic apoptotic signaling pathway in response to nitrosative stress.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:14752510","GOC:bf","GOC:PARL"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of nitrosative stress-induced intrinsic apoptotic signaling pathway","termid":"GO:1905258"},{"relation_name":"is_a","term_name":"negative regulation of intrinsic apoptotic signaling pathway","termid":"GO:2001243"},{"relation_name":"negatively_regulates","term_name":"intrinsic apoptotic signaling pathway in response to nitrosative stress","termid":"GO:1990442"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"negative regulation of nitrosative stress-induced intrinsic apoptotic signaling pathway","synonyms":[{"name":"down regulation of intrinsic apoptotic signaling pathway in response to nitrosative stress","type":"exact"},{"name":"down regulation of nitrosative stress-induced apoptosis","type":"related"},{"name":"down regulation of nitrosative stress-induced intrinsic apoptotic signaling pathway","type":"exact"},{"name":"down-regulation of intrinsic apoptotic signaling pathway in response to nitrosative stress","type":"exact"},{"name":"down-regulation of nitrosative stress-induced apoptosis","type":"related"},{"name":"down-regulation of nitrosative stress-induced intrinsic apoptotic signaling pathway","type":"exact"},{"name":"downregulation of intrinsic apoptotic signaling pathway in response to nitrosative stress","type":"exact"},{"name":"downregulation of nitrosative stress-induced apoptosis","type":"related"},{"name":"downregulation of nitrosative stress-induced intrinsic apoptotic signaling pathway","type":"exact"},{"name":"inhibition of intrinsic apoptotic signaling pathway in response to nitrosative stress","type":"narrow"},{"name":"inhibition of nitrosative stress-induced apoptosis","type":"related"},{"name":"inhibition of nitrosative stress-induced intrinsic apoptotic signaling pathway","type":"narrow"},{"name":"negative regulation of intrinsic apoptotic signaling pathway in response to nitrosative stress","type":"exact"},{"name":"negative regulation of nitrosative stress-induced apoptosis","type":"related"}],"termid":"GO:1905259"}


id: MONDO:0006653
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Fibrosis of the lung parenchyma caused by inhalation of carbon and silica dust. It manifests as shortness of breath.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pneumoconiosis","termid":"MONDO:0015926"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"anthracosilicosis","secondary_identifiers":["NCIT:C34389","MEDGEN:1958","EFO:1000813","CSP:2596-4484","SCTID:33548005","DOID:10324","MESH:D000874","UMLS:C0003164","MedDRA:10050363"],"termid":"MONDO:0006653","xrefs":{"Monarch":{"xref_id":"0006653"}}}


id: MONDO:0006395
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplasm that arises from the glandular epithelium of the rectal mucosa. It is characterized by tubular and villous architectural patterns. The neoplastic glandular cells have dysplastic features.","definition_xrefs":["NCIT:C5620"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rectum adenoma","termid":"MONDO:0000530"},{"relation_name":"is_a","term_name":"colorectal tubulovillous adenoma","termid":"MONDO:0024662"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"rectal tubulovillous adenoma","secondary_identifiers":["SCTID:448428002","UMLS:C1335691","MEDGEN:277578","EFO:1000505"],"synonyms":[{"name":"Villotubular adenoma of rectum","type":"exact"},{"name":"Villotubular adenoma of the rectum","type":"exact"},{"name":"rectal Villotubular adenoma","type":"exact"},{"name":"rectal tubulovillous adenoma","type":"exact"},{"name":"tubulovillous adenoma of rectum","type":"exact"},{"name":"tubulovillous adenoma of the rectum","type":"exact"}],"termid":"MONDO:0006395","xrefs":{"Monarch":{"xref_id":"0006395"}}}


id: PBO:0011151
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-1-tetrahydrofolatesynthase/methylenetetrahydrof olatedehydrogenase/methylenetetrahydrofolatecyclohydrolase/ formyltetrahydrofolatesynthetase (predicted)","termid":"PBO:0011151"}


id: MONDO:0002611
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete benign epilepsy with centrotemporal spikes (obsolete MONDO:0002611)","termid":"MONDO:0002611","xrefs":{"Monarch":{"xref_id":"0002611"}}}


id: PBO:0043009
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cancer hallmarks in lung lncRNA 1","termid":"PBO:0043009"}


id: PBO:0059647
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-CO1 pseudogene 13","termid":"PBO:0059647"}


id: GO:0002224
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by a ligand binding to a toll-like receptor of a target cell. Toll-like receptors directly bind pattern motifs from a variety of microbial sources to initiate an innate immune response.","definition_xrefs":["GOC:add","GO_REF:0000022","PMID:15585605","PMID:12524386","ISBN:0781735149","PMID:12467241","PMID:15728447","PMID:12855817"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pattern recognition receptor signaling pathway","termid":"GO:0002221"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"toll-like receptor signaling pathway","secondary_identifiers":["Reactome:R-HSA-168898"],"synonyms":[{"name":"TLR signaling pathway","type":"exact"},{"name":"toll-like receptor signalling pathway","type":"exact"}],"termid":"GO:0002224"}


id: GO:1901244
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter to protect the cell or organism in response to the presence of a fungus.","definition_xrefs":["GOC:kmv","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transcription from RNA polymerase II promoter involved in defense response to fungus (obsolete GO:1901244)","synonyms":[{"name":"activation of global transcription from RNA polymerase II promoter involved in defence response to fungi","type":"related"},{"name":"activation of global transcription from RNA polymerase II promoter involved in defence response to fungus","type":"related"},{"name":"activation of global transcription from RNA polymerase II promoter involved in defense response to fungi","type":"related"},{"name":"activation of global transcription from RNA polymerase II promoter involved in defense response to fungus","type":"related"},{"name":"activation of transcription from RNA polymerase II promoter involved in defence response to fungi","type":"narrow"},{"name":"activation of transcription from RNA polymerase II promoter involved in defence response to fungus","type":"narrow"},{"name":"activation of transcription from RNA polymerase II promoter involved in defense response to fungi","type":"narrow"},{"name":"activation of transcription from RNA polymerase II promoter involved in defense response to fungus","type":"narrow"},{"name":"positive regulation of gene-specific transcription from RNA polymerase II promoter involved in defence response to fungi","type":"related"},{"name":"positive regulation of gene-specific transcription from RNA polymerase II promoter involved in defence response to fungus","type":"related"},{"name":"positive regulation of gene-specific transcription from RNA polymerase II promoter involved in defense response to fungi","type":"related"},{"name":"positive regulation of gene-specific transcription from RNA polymerase II promoter involved in defense response to fungus","type":"related"},{"name":"positive regulation of global transcription from Pol II promoter involved in defence response to fungi","type":"related"},{"name":"positive regulation of global transcription from Pol II promoter involved in defence response to fungus","type":"related"},{"name":"positive regulation of global transcription from Pol II promoter involved in defense response to fungi","type":"related"},{"name":"positive regulation of global transcription from Pol II promoter involved in defense response to fungus","type":"related"},{"name":"positive regulation of transcription from Pol II promoter involved in defence response to fungi","type":"exact"},{"name":"positive regulation of transcription from Pol II promoter involved in defence response to fungus","type":"exact"},{"name":"positive regulation of transcription from Pol II promoter involved in defense response to fungi","type":"exact"},{"name":"positive regulation of transcription from Pol II promoter involved in defense response to fungus","type":"exact"},{"name":"positive regulation of transcription from RNA polymerase II promoter involved in defence response to fungi","type":"exact"},{"name":"positive regulation of transcription from RNA polymerase II promoter involved in defence response to fungus","type":"exact"},{"name":"positive regulation of transcription from RNA polymerase II promoter involved in defense response to fungi","type":"exact"},{"name":"stimulation of global transcription from RNA polymerase II promoter involved in defence response to fungi","type":"narrow"},{"name":"stimulation of global transcription from RNA polymerase II promoter involved in defence response to fungus","type":"narrow"},{"name":"stimulation of global transcription from RNA polymerase II promoter involved in defense response to fungi","type":"narrow"},{"name":"stimulation of global transcription from RNA polymerase II promoter involved in defense response to fungus","type":"narrow"},{"name":"stimulation of transcription from RNA polymerase II promoter involved in defence response to fungi","type":"exact"},{"name":"stimulation of transcription from RNA polymerase II promoter involved in defence response to fungus","type":"exact"},{"name":"stimulation of transcription from RNA polymerase II promoter involved in defense response to fungi","type":"exact"},{"name":"stimulation of transcription from RNA polymerase II promoter involved in defense response to fungus","type":"exact"},{"name":"up regulation of global transcription from RNA polymerase II promoter involved in defence response to fungi","type":"related"},{"name":"up regulation of global transcription from RNA polymerase II promoter involved in defence response to fungus","type":"related"},{"name":"up regulation of global transcription from RNA polymerase II promoter involved in defense response to fungi","type":"related"},{"name":"up regulation of global transcription from RNA polymerase II promoter involved in defense response to fungus","type":"related"},{"name":"up regulation of transcription from RNA polymerase II promoter involved in defence response to fungi","type":"exact"},{"name":"up regulation of transcription from RNA polymerase II promoter involved in defence response to fungus","type":"exact"},{"name":"up regulation of transcription from RNA polymerase II promoter involved in defense response to fungi","type":"exact"},{"name":"up regulation of transcription from RNA polymerase II promoter involved in defense response to fungus","type":"exact"},{"name":"up-regulation of global transcription from RNA polymerase II promoter involved in defence response to fungi","type":"related"},{"name":"up-regulation of global transcription from RNA polymerase II promoter involved in defence response to fungus","type":"related"},{"name":"up-regulation of global transcription from RNA polymerase II promoter involved in defense response to fungi","type":"related"},{"name":"up-regulation of global transcription from RNA polymerase II promoter involved in defense response to fungus","type":"related"},{"name":"up-regulation of transcription from RNA polymerase II promoter involved in defence response to fungi","type":"exact"},{"name":"up-regulation of transcription from RNA polymerase II promoter involved in defence response to fungus","type":"exact"},{"name":"up-regulation of transcription from RNA polymerase II promoter involved in defense response to fungi","type":"exact"},{"name":"up-regulation of transcription from RNA polymerase II promoter involved in defense response to fungus","type":"exact"},{"name":"upregulation of global transcription from RNA polymerase II promoter involved in defence response to fungi","type":"related"},{"name":"upregulation of global transcription from RNA polymerase II promoter involved in defence response to fungus","type":"related"},{"name":"upregulation of global transcription from RNA polymerase II promoter involved in defense response to fungi","type":"related"},{"name":"upregulation of global transcription from RNA polymerase II promoter involved in defense response to fungus","type":"related"},{"name":"upregulation of transcription from RNA polymerase II promoter involved in defence response to fungi","type":"exact"},{"name":"upregulation of transcription from RNA polymerase II promoter involved in defence response to fungus","type":"exact"},{"name":"upregulation of transcription from RNA polymerase II promoter involved in defense response to fungi","type":"exact"},{"name":"upregulation of transcription from RNA polymerase II promoter involved in defense response to fungus","type":"exact"}],"termid":"GO:1901244"}


id: GO:0031067
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of the removal of acetyl groups to histones in centromeric DNA.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of histone deacetylation at centromere (obsolete GO:0031067)","synonyms":[{"name":"down regulation of histone deacetylation at centromere","type":"exact"},{"name":"down-regulation of histone deacetylation at centromere","type":"exact"},{"name":"downregulation of histone deacetylation at centromere","type":"exact"},{"name":"inhibition of histone deacetylation at centromere","type":"narrow"}],"termid":"GO:0031067"}


id: GO:0035764
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that gives rise to the dorsal motor nucleus of the vagus nerve. This process pertains to the initial formation of a structure from unspecified parts.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"dorsal motor nucleus of vagus nerve morphogenesis","termid":"GO:0035762"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dorsal motor nucleus of vagus nerve formation","termid":"GO:0035764"}


id: GO:0071268
data:
  {"annotated_genes":["SJAG_02972"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[112482],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071269"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of homocysteine, 2-amino-4-sulfanylbutanoic acid.","definition_xrefs":["GOC:ecd","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sulfur amino acid biosynthetic process","termid":"GO:0000097"},{"relation_name":"is_a","term_name":"homocysteine metabolic process","termid":"GO:0050667"},{"relation_name":"is_a","term_name":"non-proteinogenic amino acid biosynthetic process","termid":"GO:0170043"},{"relation_name":"is_a","term_name":"alpha-amino acid biosynthetic process","termid":"GO:1901607"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02972":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006520","GO:0044281","GO:0008150","GO:0006790"],"is_obsolete":false,"name":"homocysteine biosynthetic process","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"homocysteine anabolism","type":"exact"},{"name":"homocysteine biosynthesis","type":"exact"},{"name":"homocysteine formation","type":"exact"},{"name":"homocysteine synthesis","type":"exact"}],"termid":"GO:0071268","terms_by_termid":{"GO:0071269":null}}


id: MONDO:1012677
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Waardenburg syndrome that occurs in golden hamsters due to a mutation in the MITF gene created by genetic engineering or gene editing.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Waardenburg syndrome, golden hamster","termid":"MONDO:1011618"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Waardenburg syndrome, MITF-related, golden hamster","secondary_identifiers":["OMIA:001401-10036"],"synonyms":[{"name":"Waardenburg syndrome, type 2A, golden hamster","type":"related"}],"termid":"MONDO:1012677","xrefs":{"Monarch":{"xref_id":"1012677"}}}


id: PBO:0045480
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"desmocollin 2","termid":"PBO:0045480"}


id: GO:1903396
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of secondary cell septum biogenesis.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:23878277","GOC:di"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of mitotic division septum assembly","termid":"GO:0140280"},{"relation_name":"is_a","term_name":"regulation of secondary cell septum biogenesis","termid":"GO:1903395"},{"relation_name":"negatively_regulates","term_name":"secondary cell septum biogenesis","termid":"GO:1990344"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"negatively_regulates","termid":"GO:0044085"},{"rel_name":"negatively_regulates","termid":"GO:0007049"},{"rel_name":"regulates","termid":"GO:0000281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"negatively_regulates","termid":"GO:0000281"},{"rel_name":"regulates","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0000281","GO:0044085","GO:0007049","GO:0008150"],"is_obsolete":false,"name":"negative regulation of secondary cell septum biogenesis","synonyms":[{"name":"down regulation of secondary cell septum biogenesis","type":"exact"},{"name":"down-regulation of secondary cell septum biogenesis","type":"exact"},{"name":"downregulation of secondary cell septum biogenesis","type":"exact"},{"name":"inhibition of secondary cell septum biogenesis","type":"narrow"}],"termid":"GO:1903396"}


id: GO:0051630
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of acetylcholine into a cell, typically presynaptic neurons or glial cells. Acetylcholine is a major neurotransmitter and neuromodulator both in the central and peripheral nervous systems. It also acts as a paracrine signal in various non-neural tissues.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylcholine transport","termid":"GO:0015870"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"acetylcholine uptake","synonyms":[{"name":"acetylcholine import","type":"exact"}],"termid":"GO:0051630"}


id: PBO:0034167
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-interaction_relation_helper_property","termid":"PBO:0034167"}


id: MOD:01158
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that modifies an L-selenocysteine residue.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"L-selenocysteine residue","termid":"MOD:00031"},{"relation_name":"is_a","term_name":"selenium containing residue","termid":"MOD:00745"},{"relation_name":"is_a","term_name":"protein modification categorized by amino acid modified","termid":"MOD:01157"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"modified L-selenocysteine residue","termid":"MOD:01158"}


id: GO:0052673
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: prenol + nucleoside triphosphate = prenyl phosphate + nucleoside diphosphate activity.","definition_xrefs":["GOC:ai","GOC:kd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, alcohol group as acceptor","termid":"GO:0016773"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016740","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"prenol kinase activity","synonyms":[{"name":"prenol phosphotransferase activity","type":"exact"},{"name":"prenyl alcohol kinase activity","type":"exact"},{"name":"prenyl alcohol phosphotransferase activity","type":"exact"}],"termid":"GO:0052673"}


id: GO:0097289
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving alpha-ribazole, the benzimidazole nucleoside in adenosyl cobalamin (vitamin B12).","definition_xrefs":["GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycosyl compound metabolic process","termid":"GO:1901657"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"alpha-ribazole metabolic process","synonyms":[{"name":"alpha-ribazole metabolism","type":"exact"}],"termid":"GO:0097289"}


id: PBO:0052836
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"keratin associated protein 2-1","termid":"PBO:0052836"}


id: PBO:0079764
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UFD1 antisense RNA 1","termid":"PBO:0079764"}


id: PBO:0017620
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Progressive Myoclonus Epilepsy","termid":"PBO:0017620"}


id: PBO:0086267
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein that stimulates the activity of serine palmitoyltransferase;  involved in sphingolipid biosynthesis; Lcb1p and Lcb2p are the two components of serine palmitoyltransferase","termid":"PBO:0086267"}


id: MONDO:0005233
data:
  {"annotated_genes":["SJAG_03689"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88184],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011014"}]},"cv_name":"mondo","definition":"A group of at least three distinct histological types of lung cancer, including non-small cell squamous cell carcinoma, adenocarcinoma, and large cell carcinoma. Non-small cell lung carcinomas have a poor response to conventional chemotherapy.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lung carcinoma","termid":"MONDO:0005138"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03689":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"non-small cell lung carcinoma","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["ONCOTREE:NSCLC","UMLS:C0007131","DOID:3908","EFO:0003060","HP:0030358","MESH:D002289","Orphanet:488201","MEDGEN:40104","NCIT:C2926","SCTID:254637007"],"synonyms":[{"name":"NSCLC","type":"exact"},{"name":"NSCLC - non-small cell lung cancer","type":"exact"},{"name":"non-small cell cancer of lung","type":"exact"},{"name":"non-small cell cancer of the lung","type":"exact"},{"name":"non-small cell carcinoma of lung","type":"exact"},{"name":"non-small cell carcinoma of the lung","type":"exact"},{"name":"non-small cell lung cancer","type":"exact"},{"name":"non-small cell lung carcinoma","type":"exact"},{"name":"non-small cell lung carcinoma (disease)","type":"exact"}],"termid":"MONDO:0005233","terms_by_termid":{"MONDO:0011014":null},"xrefs":{"Monarch":{"xref_id":"0005233"}}}


id: PBO:0075727
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SRM pseudogene 3","termid":"PBO:0075727"}


id: PBO:0004977
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RecQ type DNA helicase Tlh1","termid":"PBO:0004977"}


id: GO:0006269
data:
  {"annotated_genes":["SJAG_02172","SJAG_03722","SJAG_02627","SJAG_04994","SJAG_01698"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[72151,77031,117528,118254,119347],"is_not":false,"summary":null,"term":"GO:0006269"}]},"cv_name":"biological_process","definition":"The synthesis of a short nucleotide polymer using one strand of unwound DNA as a template. The product is usually a RNA molecule between 4-15 nucleotides long that provides a free 3'-OH that can be extended by DNA-directed DNA polymerases. In certain conditions, for example in response to DNA damage, some primases synthesize a DNA primer.","definition_xrefs":["PMID:11395402","PMID:38203225","PMID:38492718"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA biosynthetic process","termid":"GO:0032774"},{"relation_name":"part_of","term_name":"DNA-templated DNA replication","termid":"GO:0006261"}],"gene_count":5,"genes_by_uniquename":{"SJAG_01698":null,"SJAG_02172":null,"SJAG_02627":null,"SJAG_03722":null,"SJAG_04994":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006260"}],"interesting_parent_ids":["GO:0006260","GO:0006259","GO:0008150"],"is_obsolete":false,"name":"DNA replication, synthesis of primer","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"DNA priming","type":"narrow"},{"name":"DNA replication, synthesis of DNA primer","type":"narrow"},{"name":"DNA replication, synthesis of RNA primer","type":"narrow"},{"name":"replication priming","type":"related"}],"termid":"GO:0006269","terms_by_termid":{"GO:0006269":null}}


id: GO:0052308
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that involves recognition of a pathogen-associated molecular pattern, and by which an organism modulates the frequency, rate or extent of the innate immune response, the first line of defense against infection, of a second organism, where the two organisms are in a symbiotic interaction.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete pathogen-associated molecular pattern dependent modulation by organism of innate immune response in other organism involved in symbiotic interaction (obsolete GO:0052308)","synonyms":[{"name":"pathogen-associated molecular pattern dependent modulation by organism of innate immunity in other organism during symbiotic interaction","type":"related"},{"name":"pathogen-associated molecular pattern dependent modulation by organism of innate immunity in other organism involved in symbiotic interaction","type":"exact"}],"termid":"GO:0052308"}


id: PBO:0048635
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gap junction protein alpha 4","termid":"PBO:0048635"}


id: PBO:0049394
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTP binding protein 10","termid":"PBO:0049394"}


id: GO:0050342
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: gamma-tocopherol + S-adenosyl-L-methionine = (+)-alpha-tocopherol + H+ + S-adenosyl-L-homocysteine. This reaction can also use delta-tocopherol, gamma-tocotrienol and delta-tocotrienol as substrates.","definition_xrefs":["EC:2.1.1.95"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-methyltransferase activity","termid":"GO:0008171"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0016741","GO:0003824"],"is_obsolete":false,"name":"tocopherol C-methyltransferase activity","secondary_identifiers":["MetaCyc:TOCOPHEROL-O-METHYLTRANSFERASE-RXN"],"synonyms":[{"name":"S-adenosyl-L-methionine:gamma-tocopherol 5-O-methyltransferase activity","type":"related"},{"name":"gamma-tocopherol methyltransferase activity","type":"exact"},{"name":"tocopherol O-methyltransferase activity","type":"exact"}],"termid":"GO:0050342"}


id: PR:O94660
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A nitrilase homolog 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02781"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hydrolase nit2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC651.02","secondary_identifiers":["UniProtKB:O94660"],"synonyms":[{"name":"Spom972h-NIT1","type":"exact"}],"termid":"PR:O94660"}


id: PBO:0082585
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Chromatin-binding ATPase that regulates histone gene expression; only bromodomain-containing AAA-ATPase in yeast; bromodomain interacts with N-terminal tail of histone H3; relocalizes to cytosol in response to hypoxia; human ortholog ANCCA is coactivator of both estrogen and androgen receptors, and increased expression of ANCCA is associated with breast and prostate cancers with poor prognoses","termid":"PBO:0082585"}


id: FYPO:0001590
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the import of lysine into the cell occurs to a lower extent than normal in the vegetative growth phase of the life cycle.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased amino acid import during vegetative growth","termid":"FYPO:0001360"},{"relation_name":"is_a","term_name":"decreased lysine import","termid":"FYPO:0001650"},{"relation_name":"is_a","term_name":"abnormal lysine import during vegetative growth","termid":"FYPO:0001653"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000002","FYPO:0000138","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"decreased lysine import during vegetative growth","synonyms":[{"name":"decreased L-lysine import across plasma membrane during vegetative growth","type":"exact"},{"name":"decreased L-lysine import during vegetative growth","type":"exact"},{"name":"decreased lysine import during mitotic cell cycle","type":"related"},{"name":"decreased lysine import into cell during vegetative growth","type":"exact"},{"name":"decreased lysine uptake during vegetative growth","type":"exact"},{"name":"reduced lysine import during vegetative growth","type":"exact"}],"termid":"FYPO:0001590"}


id: PBO:0029841
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_maintenance_of_protein_localization_to_heterochromatin_at_centromere_outer_repeat","termid":"PBO:0029841"}


id: MONDO:0018824
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Pyoderma gangrenosum (PG) is a primarily sterile inflammatory neutrophilic dermatosis characterized by recurrent cutaneous ulcerations with a mucopurulent or hemorrhagic exudate.","definition_xrefs":["Orphanet:48104"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyoderma","termid":"MONDO:0002922"},{"relation_name":"is_a","term_name":"autoinflammatory syndrome","termid":"MONDO:0019751"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"pyoderma gangrenosum","secondary_identifiers":["DOID:8553","MEDGEN:43224","ICD9:686.01","MedDRA:10037635","NANDO:2200437","SCTID:74578003","NORD:1638","GARD:7510","ICD10CM:L88","icd11.foundation:2120746218","UMLS:C0085652","MESH:D017511"],"termid":"MONDO:0018824","xrefs":{"Monarch":{"xref_id":"0018824"}}}


id: GO:0014879
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of events by which an electrical stimulus is received and converted into a molecular signal. This occurs as part of the regulation of muscle adaptation.","definition_xrefs":["GOC:ef","GOC:mtg_muscle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to electrical stimulus involved in regulation of muscle adaptation","termid":"GO:0014878"},{"relation_name":"is_a","term_name":"detection of electrical stimulus","termid":"GO:0050981"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"detection of electrical stimulus involved in regulation of muscle adaptation","termid":"GO:0014879"}


id: PBO:0073655
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SIM bHLH transcription factor 2","termid":"PBO:0073655"}


id: MONDO:0005622
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete vasculitis (obsolete MONDO:0005622)","termid":"MONDO:0005622","xrefs":{"Monarch":{"xref_id":"0005622"}}}


id: PBO:0069046
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 291, pseudogene","termid":"PBO:0069046"}


id: PBO:0030538
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cAMP_level_during_glucose_starvation","termid":"PBO:0030538"}


id: PBO:0005381
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pombe glycoprotease","termid":"PBO:0005381"}


id: PBO:0046016
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 2 alpha kinase 2","termid":"PBO:0046016"}


id: FYPO:0006031
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the initiation of nuclear DNA replication begins later than normal.","definition_xrefs":["PMID:28481910","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic DNA replication initiation","termid":"FYPO:0001344"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000631","FYPO:0005447","FYPO:0000002","FYPO:0000293"],"is_obsolete":false,"name":"delayed onset of mitotic DNA replication initiation","synonyms":[{"name":"delayed mitotic DNA replication initiation","type":"exact"},{"name":"delayed onset of DNA replication initiation during mitotic cell cycle","type":"exact"},{"name":"delayed onset of DNA replication initiation during vegetative growth","type":"exact"}],"termid":"FYPO:0006031"}


id: GO:0032678
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of interleukin-9 production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytokine production","termid":"GO:0001817"},{"relation_name":"regulates","term_name":"interleukin-9 production","termid":"GO:0032638"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"regulation of interleukin-9 production","secondary_identifiers":["GO:0045417"],"synonyms":[{"name":"regulation of IL-9 production","type":"exact"},{"name":"regulation of interleukin-9 biosynthetic process","type":"narrow"}],"termid":"GO:0032678"}


id: PBO:0091617
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial matrix protein, YjgF family protein Mmf2, reactive intermediate imine deaminase A homolog","termid":"PBO:0091617"}


id: PBO:0049837
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"highly divergent homeobox","termid":"PBO:0049837"}


id: PBO:0063258
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protocadherin beta 4","termid":"PBO:0063258"}


id: PBO:0066237
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA binding motif protein 44","termid":"PBO:0066237"}


id: GO:0048568
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Development, taking place during the embryonic phase, of a tissue or tissues that work together to perform a specific function or functions. Development pertains to the process whose specific outcome is the progression of a structure over time, from its formation to the mature structure. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"animal organ development","termid":"GO:0048513"},{"relation_name":"part_of","term_name":"embryo development","termid":"GO:0009790"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"embryonic organ development","synonyms":[{"name":"embryonic organogenesis","type":"exact"}],"termid":"GO:0048568"}


id: GO:1902699
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways resulting in the breakdown of pentose to acetate.","definition_xrefs":["GO_REF:0000093","PMID:18727018","PMID:19539744","GOC:mengo_curators","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete pentose catabolic process to acetate (obsolete GO:1902699)","synonyms":[{"name":"acidogenesis","type":"broad"},{"name":"pentose breakdown to acetate","type":"exact"},{"name":"pentose catabolism to acetate","type":"exact"},{"name":"pentose degradation to acetate","type":"exact"}],"termid":"GO:1902699"}


id: PBO:0056839
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MGAT4 family member D","termid":"PBO:0056839"}


id: PBO:0044205
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cathepsin L pseudogene 3","termid":"PBO:0044205"}


id: MONDO:1010914
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hereditary abnormal increase in muscular tissue caused by enlargement of existing cells in cattle due to a variation in the MSTN gene.","definition_xrefs":["OMIA:000683-9913"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"},{"relation_name":"is_a","term_name":"musculoskeletal system disorder, non-human animal","termid":"MONDO:1011335"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"muscular hypertrophy, MSTN-related, cattle","synonyms":[{"name":"double muscling","type":"exact"}],"termid":"MONDO:1010914","xrefs":{"Monarch":{"xref_id":"1010914"}}}


id: GO:0070580
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving base J (beta-D-glucosyl-hydroxymethyluracil), a hypermodified thymidine residue found in the genome of kinetoplastid parasites. This modified base is localized primarily to repetitive DNA, namely the telomeres, and is implicated in the regulation of antigenic variation. The base is synthesized in a two-step pathway. Initially, a thymidine residue in DNA is hydroxylated by a thymidine hydroxylase (TH) to form the intermediate hydroxymethyluracil, which is then glucosylated to form base J.","definition_xrefs":["PMID:19114062"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA modification","termid":"GO:0006304"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006259"],"is_obsolete":false,"name":"base J metabolic process","synonyms":[{"name":"base J metabolism","type":"exact"},{"name":"beta-D-glucosyl-HOMedU metabolic process","type":"exact"},{"name":"beta-D-glucosyl-hydroxymethyluracil metabolism","type":"exact"}],"termid":"GO:0070580"}


id: GO:0043565
data:
  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id: PBO:0074743
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id: PBO:0076176
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sulfotransferase family 1D member 1 pseudogene 2","termid":"PBO:0076176"}


id: PBO:0057983
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3910-1","termid":"PBO:0057983"}


id: PBO:0075014
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id: FYPO:0006072
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id: GO:0016314
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id: PBO:0028550
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id: PR:O60139
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id: PBO:0083736
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id: PBO:0051082
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id: SO:0001966
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  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A modified DNA cytosine base feature, modified by a carboxy group at the 5 carbon.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified_cytosine","termid":"SO:0001963"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5_carboxylcytosine","secondary_identifiers":["http:http\\://www.pacificbiosciences.com/pdf/WP_Detecting_DNA_Base_Modifications_Using_SMRT_Sequencing.pdf"],"synonyms":[{"name":"5-caC","type":"exact"},{"name":"5-carboxycytosine","type":"exact"}],"termid":"SO:0001966"}


id: PBO:0073987
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 25 member 1 pseudogene 1","termid":"PBO:0073987"}


id: GO:1900316
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id: MONDO:1010222
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Chronic myelomonocytic leukemia that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"leukemia, non-human animal","termid":"MONDO:0700100"},{"relation_name":"is_a","term_name":"immune system disorder, non-human animal","termid":"MONDO:0700106"},{"relation_name":"is_a","term_name":"connective tissue disorder, non-human animal","termid":"MONDO:1011309"},{"relation_name":"is_a","term_name":"musculoskeletal system disorder, non-human animal","termid":"MONDO:1011335"},{"relation_name":"is_a","term_name":"cancer, non-human animal","termid":"MONDO:1011828"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chronic myelomonocytic leukemia, non-human animal","secondary_identifiers":["OMIA:002299"],"termid":"MONDO:1010222","xrefs":{"Monarch":{"xref_id":"1010222"}}}


id: PR:G2TRL1
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  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC186.04c gene.","definition_xrefs":["PRO:DNx","UniProtKB:G2TRL1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C186.04c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC186.04c","synonyms":[{"name":"Spom972h-SPAC186.04c","type":"exact"}],"termid":"PR:G2TRL1"}


id: GO:0051096
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  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the activity of a helicase.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of ATP-dependent activity","termid":"GO:0032781"},{"relation_name":"is_a","term_name":"positive regulation of catalytic activity","termid":"GO:0043085"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of helicase activity","synonyms":[{"name":"activation of helicase activity","type":"narrow"},{"name":"stimulation of helicase activity","type":"narrow"},{"name":"up regulation of helicase activity","type":"exact"},{"name":"up-regulation of helicase activity","type":"exact"},{"name":"upregulation of helicase activity","type":"exact"}],"termid":"GO:0051096"}


id: MONDO:0013042
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"atypical hemolytic uremic syndrome with complement gene abnormality","termid":"MONDO:0035290"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"atypical hemolytic-uremic syndrome with B factor anomaly","secondary_identifiers":["Orphanet:93578","MEDGEN:416691","GARD:18554","OMIM:612924","UMLS:C2752038"],"synonyms":[{"name":"AHUS4","type":"related"},{"name":"D-HUS with B factor anomaly","type":"exact"},{"name":"aHUS with B factor anomaly","type":"exact"},{"name":"aHUS, susceptibility to, 4","type":"related"},{"name":"aHUS4","type":"related"},{"name":"atypical HUS with B factor anomaly","type":"exact"},{"name":"hemolytic uremic syndrome, atypical, susceptibility to, 4","type":"related"},{"name":"hemolytic uremic syndrome, atypical, susceptibility to, type 4","type":"exact"},{"name":"hemolytic-uremic syndrome without diarrhea with B factor anomaly","type":"exact"},{"name":"hemolytic-uremic syndrome without diarrhoea with B factor anomaly","type":"exact"},{"name":"susceptibility to atypical hemolytic uremic syndrome 4","type":"related"}],"termid":"MONDO:0013042","xrefs":{"Monarch":{"xref_id":"0013042"}}}


id: GO:0044329
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes involved in the positive regulation of cell to cell adhesion.","definition_xrefs":["GOC:BHF","GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete canonical Wnt signaling pathway involved in positive regulation of cell-cell adhesion (obsolete GO:0044329)","synonyms":[{"name":"canonical Wnt receptor signaling pathway involved in positive regulation of cell-cell adhesion","type":"exact"},{"name":"canonical Wnt receptor signalling pathway involved in positive regulation of cell-cell adhesion","type":"exact"},{"name":"canonical Wnt-activated signaling pathway involved in positive regulation of cell-cell adhesion","type":"exact"}],"termid":"GO:0044329"}


id: PR:Q9UTL7
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A GPN-loop GTPase 2 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO01930","PANTHER:PTHR21231:SF3","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GPN-loop GTPase 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC144.07c","secondary_identifiers":["UniProtKB:Q9UTL7"],"synonyms":[{"name":"ATP-binding domain 1 family member B homolog (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-GPN2","type":"exact"}],"termid":"PR:Q9UTL7"}


id: GO:0141153
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"NADP+ + sn-glycerol 3-phosphate = dihydroxyacetone phosphate + H+ + NADPH.","definition_xrefs":["RHEA:11096","PMID:15557260"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycerol-3-phosphate dehydrogenase [NAD(P)+] activity","termid":"GO:0047952"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"glycerol-3-phosphate dehydrogenase (NADP+) activity","secondary_identifiers":["KEGG_REACTION:R00844"],"synonyms":[{"name":"L-glycerol-3-phosphate:NADP oxidoreductase activity","type":"exact"},{"name":"glycerol phosphate dehydrogenase (nicotinamide adenine dinucleotide phosphate) activity","type":"exact"},{"name":"glycerol-3-phosphate dehydrogenase [NADP+] activity","type":"exact"}],"termid":"GO:0141153"}


id: PBO:0111349
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small subunit processome, U3 snoRNP-associated protein Utp10","termid":"PBO:0111349"}


id: GO:1990936
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a vascular smooth muscle cell (a non-striated, elongated, spindle-shaped cell found lining the blood vessels) loses the structural or functional features that characterize it in the mature organism, or some other relatively stable phase of the organism's life history. Under certain conditions, these cells can revert back to the features of the stem cells that were their ancestors.","definition_xrefs":["GOC:rph","GOC:BHF_miRNA","GOC:BHF","PMID:19088079"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell dedifferentiation involved in phenotypic switching","termid":"GO:0090678"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"vascular associated smooth muscle cell dedifferentiation","synonyms":[{"name":"vascular smooth muscle cell dedifferentiation","type":"exact"}],"termid":"GO:1990936"}


id: MONDO:0008459
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spinocerebellar atrophy with pupillary paralysis","secondary_identifiers":["MEDGEN:356608","OMIM:183100","MESH:C566668","UMLS:C1866746"],"synonyms":[{"name":"spinocerebellar atrophy with pupillary paralysis","type":"exact"}],"termid":"MONDO:0008459","xrefs":{"Monarch":{"xref_id":"0008459"}}}


id: PR:O14308
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- swc4 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O14308"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SWR1-complex protein 4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC9G1.13c","synonyms":[{"name":"Spom972h-swc4","type":"exact"}],"termid":"PR:O14308"}


id: FYPO:0003966
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell during a cellular response to salt stress is higher than normal. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein level during vegetative growth","termid":"FYPO:0001327"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001985","FYPO:0001320","FYPO:0006551"],"is_obsolete":false,"name":"increased protein level during cellular response to salt stress","synonyms":[{"name":"increased protein accumulation during cellular response to salt stress","type":"related"},{"name":"increased protein level during cellular response to salt stress during mitotic cell cycle","type":"related"},{"name":"increased protein level during cellular response to salt stress during vegetative growth","type":"exact"}],"termid":"FYPO:0003966"}


id: PBO:0004573
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sphingosine hydroxylase Sur2","termid":"PBO:0004573"}


id: GO:0032763
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of mast cell cytokine production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytokine production involved in immune response","termid":"GO:0002718"},{"relation_name":"regulates","term_name":"mast cell cytokine production","termid":"GO:0032762"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"regulation of mast cell cytokine production","termid":"GO:0032763"}


id: MONDO:1011103
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Renal agenesis that occurs in domestic cat.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"renal agenesis, non-human animal","termid":"MONDO:1010272"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"renal agenesis, domestic cat","secondary_identifiers":["OMIA:002007-9685"],"termid":"MONDO:1011103","xrefs":{"Monarch":{"xref_id":"1011103"}}}


id: PBO:0060626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NCK associated protein 5","termid":"PBO:0060626"}


id: MONDO:0005946
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Chronic, localized granulomatous infection of mucocutaneous tissues, especially the nose, and characterized by hyperplasia and the development of polyps. It is found in humans and other animals and is caused by the mesomycetozoean organism rhinosporidium seeberi.","definition_xrefs":["MESH:D012227"],"direct_ancestors":[{"relation_name":"is_a","term_name":"parasitic Ichthyosporea infectious disease","termid":"MONDO:0000307"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rhinosporidiosis","secondary_identifiers":["ICD10CM:B48.1","UMLS:C0035469","EFO:0007471","icd11.foundation:1150206155","ICD9:117.0","SCTID:18140003","DOID:2409","MEDGEN:48452"],"synonyms":[{"name":"Rhinosporidioses","type":"related"},{"name":"Rhinosporidium seeberi caused disease or disorder","type":"exact"},{"name":"Rhinosporidium seeberi disease or disorder","type":"exact"},{"name":"Rhinosporidium seeberi infectious disease","type":"exact"},{"name":"infection by Rhinosporidium seeberi","type":"exact"}],"termid":"MONDO:0005946","xrefs":{"Monarch":{"xref_id":"0005946"}}}


id: MONDO:0006929
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Infections with bacteria of the genus proteus.","definition_xrefs":["MESH:D011512"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bacterial infectious disease","termid":"MONDO:0005113"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Proteus infectious disease","secondary_identifiers":["SCTID:186437007","UMLS:C0033700","MEDGEN:46164"],"synonyms":[{"name":"Proteus <enterobacteria> caused disease or disorder","type":"exact"},{"name":"Proteus <enterobacteria> disease or disorder","type":"exact"},{"name":"Proteus <enterobacteria> infectious disease","type":"exact"},{"name":"Proteus infection","type":"related"},{"name":"infection, Proteus","type":"related"},{"name":"infections, Proteus","type":"related"}],"termid":"MONDO:0006929","xrefs":{"Monarch":{"xref_id":"0006929"}}}


id: GO:0009863
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals mediated by salicylic acid.","definition_xrefs":["GOC:jy"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signal transduction","termid":"GO:0007165"},{"relation_name":"part_of","term_name":"cellular response to salicylic acid stimulus","termid":"GO:0071446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"salicylic acid mediated signaling pathway","synonyms":[{"name":"salicylic acid mediated signal transduction","type":"exact"},{"name":"salicylic acid mediated signalling pathway","type":"exact"},{"name":"salicylic acid-mediated signaling pathway","type":"exact"}],"termid":"GO:0009863"}


id: PBO:0000443
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BRCT domain","termid":"PBO:0000443"}


id: GO:0002868
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of B cell deletion.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of B cell tolerance induction","termid":"GO:0002662"},{"relation_name":"is_a","term_name":"regulation of acute inflammatory response","termid":"GO:0002673"},{"relation_name":"is_a","term_name":"regulation of B cell deletion","termid":"GO:0002867"},{"relation_name":"is_a","term_name":"negative regulation of B cell apoptotic process","termid":"GO:0002903"},{"relation_name":"is_a","term_name":"negative regulation of apoptotic process involved in development","termid":"GO:1904746"},{"relation_name":"negatively_regulates","term_name":"B cell deletion","termid":"GO:0002516"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of B cell deletion","synonyms":[{"name":"down regulation of B cell deletion","type":"exact"},{"name":"down-regulation of B cell deletion","type":"exact"},{"name":"downregulation of B cell deletion","type":"exact"},{"name":"inhibition of B cell deletion","type":"narrow"},{"name":"negative regulation of B lymphocyte deletion","type":"exact"},{"name":"negative regulation of B-cell deletion","type":"exact"},{"name":"negative regulation of B-lymphocyte deletion","type":"exact"}],"termid":"GO:0002868"}


id: PBO:0073974
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 22 member 25","termid":"PBO:0073974"}


id: GO:0031159
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the size of the aggregate formed during sorocarp formation.","definition_xrefs":["PMID:5002049","GOC:mah","GOC:pg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of aggregate size involved in sorocarp development","termid":"GO:0031157"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of aggregate size involved in sorocarp development","synonyms":[{"name":"activation of aggregate size","type":"narrow"},{"name":"stimulation of aggregate size","type":"narrow"},{"name":"up regulation of aggregate size","type":"exact"},{"name":"up-regulation of aggregate size","type":"exact"},{"name":"upregulation of aggregate size","type":"exact"}],"termid":"GO:0031159"}


id: MONDO:0021937
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Asrar Facharzt Haque syndrome (obsolete MONDO:0021937)","termid":"MONDO:0021937","xrefs":{"Monarch":{"xref_id":"0021937"}}}


id: GO:0045572
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of imaginal disc growth.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of imaginal disc growth","termid":"GO:0045570"},{"relation_name":"is_a","term_name":"positive regulation of developmental growth","termid":"GO:0048639"},{"relation_name":"positively_regulates","term_name":"imaginal disc growth","termid":"GO:0007446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of imaginal disc growth","synonyms":[{"name":"activation of imaginal disc growth","type":"narrow"},{"name":"stimulation of imaginal disc growth","type":"narrow"},{"name":"up regulation of imaginal disc growth","type":"exact"},{"name":"up-regulation of imaginal disc growth","type":"exact"},{"name":"upregulation of imaginal disc growth","type":"exact"}],"termid":"GO:0045572"}


id: PBO:0068933
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 176, pseudogene","termid":"PBO:0068933"}


id: GO:0102094
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: S-adenosyl-L-methionine + a demethylmenaquinol = S-adenosyl-L-homocysteine + H+ + a menaquinol.","definition_xrefs":["GOC:pz","PMID:9045837","PMID:1444716"],"gene_count":0,"genotype_count":0,"name":"obsolete S-adenosylmethionine:2-demethylmenaquinol methyltransferase activity (obsolete GO:0102094)","termid":"GO:0102094"}


id: PBO:0066936
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 238","termid":"PBO:0066936"}


id: GO:0002302
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an antigenically naive CD8-positive, alpha-beta T cell acquires the specialized features of an effector, regulatory, or memory T cell as part of an immune response. Effector T cells include cells which provide T cell help or exhibit cytotoxicity towards other cells.","definition_xrefs":["GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-beta T cell differentiation involved in immune response","termid":"GO:0002293"},{"relation_name":"is_a","term_name":"CD8-positive, alpha-beta T cell differentiation","termid":"GO:0043374"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"CD8-positive, alpha-beta T cell differentiation involved in immune response","synonyms":[{"name":"CD8-positive, alpha-beta T cell differentiation during immune response","type":"related"},{"name":"CD8-positive, alpha-beta T lymphocyte differentiation during immune response","type":"related"},{"name":"CD8-positive, alpha-beta T-cell differentiation during immune response","type":"related"},{"name":"CD8-positive, alpha-beta T-lymphocyte differentiation during immune response","type":"related"},{"name":"CD8-positive, alpha-beta intraepithelial T cell development","type":"related"}],"termid":"GO:0002302"}


id: GO:1905043
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of epithelium regeneration.","definition_xrefs":["GOC:rph","GOC:TermGenie","GO_REF:0000058","PMID:23221517","GOC:BHF_miRNA","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of developmental growth","termid":"GO:0048639"},{"relation_name":"is_a","term_name":"regulation of epithelium regeneration","termid":"GO:1905041"},{"relation_name":"positively_regulates","term_name":"epithelium regeneration","termid":"GO:1990399"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of epithelium regeneration","synonyms":[{"name":"activation of epithelium regeneration","type":"narrow"},{"name":"activation of regeneration of epithelium","type":"narrow"},{"name":"positive regulation of regeneration of epithelium","type":"exact"},{"name":"up regulation of epithelium regeneration","type":"exact"},{"name":"up regulation of regeneration of epithelium","type":"exact"},{"name":"up-regulation of epithelium regeneration","type":"exact"},{"name":"up-regulation of regeneration of epithelium","type":"exact"},{"name":"upregulation of epithelium regeneration","type":"exact"},{"name":"upregulation of regeneration of epithelium","type":"exact"}],"termid":"GO:1905043"}


id: PBO:0047588
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibroblast growth factor receptor like 1","termid":"PBO:0047588"}


id: GO:0034258
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of a nicotinamide riboside, which is a pyridine-3-carboxamide covalently bonded to a ribose sugar, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:se"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside transport","termid":"GO:0015858"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"nicotinamide riboside transport","termid":"GO:0034258"}


id: FYPO:0006384
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the rate, or speed, of endocytosis is decreased when the cell is subject to nitrogen starvation. A phenotype may affect endocytosis of all cargoes, or of specific cargo such as a particular protein.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal endocytosis","termid":"FYPO:0003886"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000138","FYPO:0005447","FYPO:0000002"],"is_obsolete":false,"name":"decreased rate of endocytosis during nitrogen starvation","synonyms":[{"name":"decreased rate of actin-mediated endocytosis during nitrogen starvation","type":"exact"},{"name":"decreased rate of endocytosis during nitrogen depletion","type":"exact"},{"name":"decreased rate of endocytosis during nitrogen deprivation","type":"exact"},{"name":"decreased rate of protein internalization during nitrogen starvation","type":"narrow"},{"name":"reduced rate of endocytosis during nitrogen starvation","type":"exact"}],"termid":"FYPO:0006384"}


id: PBO:0081611
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 536","termid":"PBO:0081611"}


id: PBO:0066435
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RE1 silencing transcription factor","termid":"PBO:0066435"}


id: PBO:0081616
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 544","termid":"PBO:0081616"}


id: MONDO:1012493
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"combined deficiency of factors VIII, IX, and X, non-human animal","termid":"MONDO:1011705"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"combined deficiency of factors VIII, IX, and X, horse","secondary_identifiers":["OMIA:001983-9796"],"termid":"MONDO:1012493","xrefs":{"Monarch":{"xref_id":"1012493"}}}


id: PBO:0030678
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_vegetative_cell_shape","termid":"PBO:0030678"}


id: PBO:0054971
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2385","termid":"PBO:0054971"}


id: PATO:0000939
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000939 regular shape (obsolete PATO:0000939)","termid":"PATO:0000939"}


id: GO:0047560
data:
  {"annotated_genes":["SJAG_02488"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[74772],"is_not":false,"summary":null,"term":"GO:0047560"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: NADP+ + sphinganine = 3-dehydrosphinganine + H+ + NADPH.","definition_xrefs":["EC:1.1.1.102","RHEA:22640"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02488":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"3-dehydrosphinganine reductase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["KEGG_REACTION:R02978","MetaCyc:3-DEHYDROSPHINGANINE-REDUCTASE-RXN","Reactome:R-HSA-428123"],"synonyms":[{"name":"3-ketosphinganine reductase activity","type":"related"},{"name":"3-oxosphinganine reductase activity","type":"related"},{"name":"3-oxosphinganine:NADPH oxidoreductase activity","type":"related"},{"name":"D-3-dehydrosphinganine reductase activity","type":"related"},{"name":"D-3-oxosphinganine reductase activity","type":"related"},{"name":"D-3-oxosphinganine:B-NADPH oxidoreductase activity","type":"related"},{"name":"D-erythro-dihydrosphingosine:NADP+ 3-oxidoreductase activity","type":"related"},{"name":"DSR activity","type":"related"},{"name":"KTS reductase activity","type":"related"}],"termid":"GO:0047560","terms_by_termid":{"GO:0047560":null}}


id: FYPO:0006025
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the binding of a protein to one or more actin filaments does not occur. The affected protein may be encoded by the mutated gene, or by a different gene.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished protein-protein interaction","termid":"FYPO:0000705"},{"relation_name":"is_a","term_name":"abnormal protein complex binding","termid":"FYPO:0003591"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000702"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0001985","FYPO:0000652","FYPO:0000702"],"is_obsolete":false,"name":"abolished actin filament binding","synonyms":[{"name":"abolished F-actin binding","type":"exact"},{"name":"abolished filamentous actin binding","type":"exact"},{"name":"actin filament binding abolished","type":"exact"}],"termid":"FYPO:0006025"}


id: PBO:0002818
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine protein kinase Sck2","termid":"PBO:0002818"}


id: MONDO:0010420
data:
  {"annotated_genes":["SJAG_03961"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88554],"is_not":false,"summary":null,"term":"MONDO:0010420"}]},"cv_name":"mondo","definition":"X-linked form of erythropoietic protoporphyria.","definition_xrefs":["MONDO:patterns/x_linked"],"direct_ancestors":[{"relation_name":"is_a","term_name":"X-linked disease","termid":"MONDO:0000425"},{"relation_name":"is_a","term_name":"erythropoietic protoporphyria","termid":"MONDO:0001676"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03961":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0019142"}],"interesting_parent_ids":["MONDO:0002515","MONDO:0019142","MONDO:0004335","MONDO:0005066","MONDO:0005093"],"is_obsolete":false,"name":"X-linked erythropoietic protoporphyria","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["NANDO:2201269","Orphanet:443197","NANDO:1200818","GARD:17755","MEDGEN:394385","UMLS:C2677889","MESH:C567464","OMIM:300752"],"synonyms":[{"name":"Erythrohepatic protoporphyria, X-linked","type":"related"},{"name":"X-linked dominant erythropoietic protoporphyria","type":"exact"},{"name":"X-linked dominant protoporphyria","type":"exact"},{"name":"XLDPP","type":"exact"},{"name":"XLEPP","type":"related"},{"name":"XLP","type":"related"},{"name":"XLPP","type":"exact"},{"name":"erythropoietic protoporphyria, X-linked","type":"exact"},{"name":"protoporphyria, erythropoietic, X-linked","type":"related"},{"name":"protoporphyria, erythropoietic, X-linked dominant","type":"related"}],"termid":"MONDO:0010420","terms_by_termid":{"MONDO:0010420":null},"xrefs":{"Monarch":{"xref_id":"0010420"}}}


id: PBO:0068248
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 28S ribosomal 5","termid":"PBO:0068248"}


id: GO:0050301
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + streptomycin 6-phosphate = phosphate + streptomycin.","definition_xrefs":["RHEA:10688","EC:3.1.3.39"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatase activity","termid":"GO:0016791"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0016788","GO:0003824"],"is_obsolete":false,"name":"streptomycin-6-phosphatase activity","secondary_identifiers":["KEGG_REACTION:R02228","MetaCyc:STREPTOMYCIN-6-PHOSPHATASE-RXN"],"synonyms":[{"name":"streptomycin 6-phosphate phosphatase activity","type":"related"},{"name":"streptomycin 6-phosphate phosphohydrolase activity","type":"related"},{"name":"streptomycin-6-P phosphohydrolase activity","type":"related"},{"name":"streptomycin-6-phosphate phosphohydrolase activity","type":"related"}],"termid":"GO:0050301"}


id: GO:1901053
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of sarcosine.","definition_xrefs":["GOC:yaf","PMID:17951379","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified amino acid catabolic process","termid":"GO:0042219"},{"relation_name":"is_a","term_name":"non-proteinogenic amino acid catabolic process","termid":"GO:0170044"},{"relation_name":"is_a","term_name":"sarcosine metabolic process","termid":"GO:1901052"},{"relation_name":"is_a","term_name":"alpha-amino acid catabolic process","termid":"GO:1901606"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281","GO:0006520"],"is_obsolete":false,"name":"sarcosine catabolic process","synonyms":[{"name":"sarcosine breakdown","type":"exact"},{"name":"sarcosine catabolism","type":"exact"},{"name":"sarcosine degradation","type":"exact"}],"termid":"GO:1901053"}


id: PBO:0052083
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Kazal type serine peptidase inhibitor domain 1","termid":"PBO:0052083"}


id: PBO:0082601
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Clathrin heavy chain; subunit of the major coat protein involved in intracellular protein transport and endocytosis; the clathrin triskelion is a trimeric molecule composed of three heavy chains that radiate from a vertex and three light chains which bind noncovalently near the vertex of the triskelion; the light chain (CLC1) is thought to regulate function","termid":"PBO:0082601"}


id: GO:0043781
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + cobalt-factor II = S-adenosyl-L-homocysteine + cobalt-factor III.","definition_xrefs":["EC:2.1.1.151"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016741","GO:0016740"],"is_obsolete":false,"name":"cobalt-factor II C20-methyltransferase activity","secondary_identifiers":["MetaCyc:RXN-8760","RHEA:17997"],"synonyms":[{"name":"CbiL","type":"narrow"},{"name":"S-adenosyl-L-methionine:cobalt-factor-II C20-methyltransferase activity","type":"related"},{"name":"cobalt-factor II C20 methyltransferase activity","type":"exact"},{"name":"cobalt-precorrin-2 C(20)-methyltransferase activity","type":"related"}],"termid":"GO:0043781"}


id: PBO:0028371
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_GT_repeat_stability","termid":"PBO:0028371"}


id: PBO:0001738
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"liddle syndrome","termid":"PBO:0001738"}


id: PBO:0117243
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycine cleavage complex subunit T, Gcv1","termid":"PBO:0117243"}


id: GO:0031602
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The core complex of a proteasome located in the endoplasmic reticulum of a cell.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete ER proteasome core complex (obsolete GO:0031602)","termid":"GO:0031602"}


id: PBO:0007592
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"antisense RNA Mue16","termid":"PBO:0007592"}


id: PBO:0044134
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-terminal binding protein 2","termid":"PBO:0044134"}


id: MONDO:0957462
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"pulmonary tuberculosis","termid":"MONDO:0006052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"primary pulmonary tuberculosis","secondary_identifiers":["Orphanet:645814","icd11.foundation:882244568"],"termid":"MONDO:0957462","xrefs":{"Monarch":{"xref_id":"0957462"}}}


id: GO:0110101
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of L-valine into the vacuole across the vacuolar membrane.","definition_xrefs":["GOC:al","PMID:20944394"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neutral amino acid transmembrane import into vacuole","termid":"GO:0034491"},{"relation_name":"is_a","term_name":"L-valine transmembrane transport","termid":"GO:1903785"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"L-valine transmembrane import into vacuole","termid":"GO:0110101"}


id: GO:0001175
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involved in the selection of the specific location within the template strand of an RNA polymerase III promoter for hybridization of the cognate ribonucleotides and formation of first phosphodiester bond within the nascent transcript.","definition_xrefs":["GOC:txnOH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA-templated transcriptional start site selection","termid":"GO:0001173"},{"relation_name":"part_of","term_name":"transcription initiation at RNA polymerase III promoter","termid":"GO:0006384"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006351"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0006351"],"is_obsolete":false,"name":"transcriptional start site selection at RNA polymerase III promoter","termid":"GO:0001175"}


id: PBO:0079096
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Tyr (anticodon GTA) 9-1","termid":"PBO:0079096"}


id: PBO:0001549
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein phosphatase inhibitor (predicted)","termid":"PBO:0001549"}


id: GO:0120252
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving a hydrocarbon, a compound consisting of carbon and hydrogen only.","definition_xrefs":["GOC:krc","Wikipedia:Hydrocarbon"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic process","termid":"GO:0008152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hydrocarbon metabolic process","synonyms":[{"name":"hydrocarbon metabolism","type":"exact"}],"termid":"GO:0120252"}


id: PBO:0066855
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 155","termid":"PBO:0066855"}


id: GO:1901041
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of peptide antigen transport.","definition_xrefs":["GOC:bf","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of antigen processing and presentation of peptide antigen","termid":"GO:0002585"},{"relation_name":"is_a","term_name":"positive regulation of transport","termid":"GO:0051050"},{"relation_name":"is_a","term_name":"regulation of peptide antigen transport","termid":"GO:1901039"},{"relation_name":"positively_regulates","term_name":"peptide antigen transport","termid":"GO:0046968"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0008150"],"is_obsolete":false,"name":"positive regulation of peptide antigen transport","synonyms":[{"name":"activation of peptide antigen transport","type":"narrow"},{"name":"up regulation of peptide antigen transport","type":"exact"},{"name":"up-regulation of peptide antigen transport","type":"exact"},{"name":"upregulation of peptide antigen transport","type":"exact"}],"termid":"GO:1901041"}


id: PBO:0063592
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PEX5L antisense RNA 2","termid":"PBO:0063592"}


id: GO:1901152
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of vistamycin.","definition_xrefs":["GOC:yaf","UniPathway:UPA00972","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aminoglycoside antibiotic biosynthetic process","termid":"GO:0030648"},{"relation_name":"is_a","term_name":"polyol biosynthetic process","termid":"GO:0046173"},{"relation_name":"is_a","term_name":"vistamycin metabolic process","termid":"GO:1901150"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"vistamycin biosynthetic process","synonyms":[{"name":"ribostamycin anabolism","type":"exact"},{"name":"ribostamycin biosynthesis","type":"exact"},{"name":"ribostamycin biosynthetic process","type":"exact"},{"name":"ribostamycin formation","type":"exact"},{"name":"ribostamycin synthesis","type":"exact"},{"name":"vistamycin anabolism","type":"exact"},{"name":"vistamycin biosynthesis","type":"exact"},{"name":"vistamycin formation","type":"exact"},{"name":"vistamycin synthesis","type":"exact"}],"termid":"GO:1901152"}


id: GO:0070349
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the rate or extent of brown fat cell proliferation.","definition_xrefs":["GOC:mah","GOC:sl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of fat cell proliferation","termid":"GO:0070346"},{"relation_name":"is_a","term_name":"regulation of brown fat cell proliferation","termid":"GO:0070347"},{"relation_name":"positively_regulates","term_name":"brown fat cell proliferation","termid":"GO:0070342"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of brown fat cell proliferation","synonyms":[{"name":"activation of brown fat cell proliferation","type":"narrow"},{"name":"positive regulation of brown adipocyte proliferation","type":"exact"},{"name":"positive regulation of brown adipose cell proliferation","type":"exact"},{"name":"stimulation of brown fat cell proliferation","type":"narrow"},{"name":"up regulation of brown fat cell proliferation","type":"exact"},{"name":"up-regulation of brown fat cell proliferation","type":"exact"},{"name":"upregulation of brown fat cell proliferation","type":"exact"}],"termid":"GO:0070349"}


id: GO:0006014
data:
  {"annotated_genes":["SJAG_00070","SJAG_03174"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[76311],"is_not":false,"summary":null,"term":"GO:0006014"},{"annotations":[58918],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0019303"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving D-ribose (ribo-pentose). As beta-D-ribofuranose, D-ribose forms the glycose group of all ribonucleosides, ribonucleotides and ribonucleic acids, and also of ribose phosphates, various glycosides, some coenzymes and some forms of vitamin B12.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pentose metabolic process","termid":"GO:0019321"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00070":null,"SJAG_03174":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0005975"}],"interesting_parent_ids":["GO:0008150","GO:0005975","GO:0044281"],"is_obsolete":false,"name":"D-ribose metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000041":null},"synonyms":[{"name":"D-ribose metabolism","type":"exact"}],"termid":"GO:0006014","terms_by_termid":{"GO:0006014":null,"GO:0019303":null}}


id: PBO:0082864
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Core Sm protein Sm D3; part of heteroheptameric complex (with Smb1p, Smd1p, Smd2p, Sme1p, Smx3p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; homolog of human Sm D3","termid":"PBO:0082864"}


id: FYPO:0008080
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a heptakisphosphate 5-kinase is decreased.","definition_xrefs":["PMID:36468882"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased catalytic activity","termid":"FYPO:0000663"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000661","FYPO:0000654","FYPO:0000652","FYPO:0001985"],"is_obsolete":false,"name":"decreased inositol heptakisphosphate 5-kinase activity","termid":"FYPO:0008080"}


id: GO:1900249
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of cytoplasmic translational elongation.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of translational elongation","termid":"GO:0045901"},{"relation_name":"is_a","term_name":"regulation of cytoplasmic translational elongation","termid":"GO:1900247"},{"relation_name":"positively_regulates","term_name":"cytoplasmic translational elongation","termid":"GO:0002182"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"positive regulation of cytoplasmic translational elongation","synonyms":[{"name":"activation of cytoplasmic translational elongation","type":"narrow"},{"name":"up regulation of cytoplasmic translational elongation","type":"exact"},{"name":"up-regulation of cytoplasmic translational elongation","type":"exact"},{"name":"upregulation of cytoplasmic translational elongation","type":"exact"}],"termid":"GO:1900249"}


id: PR:Q9P801
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC777.17c gene.","definition_xrefs":["UniProtKB:Q9P801","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L9-like mitochondrial ribosomal protein SPCC777.17c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC777.17c","synonyms":[{"name":"54S ribosomal protein L9, mitochondrial (Schizosaccharomyces pombe 972h-)","type":"related"},{"name":"Spom972h-SPCC777.17c","type":"exact"}],"termid":"PR:Q9P801"}


id: PBO:0056435
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MARK2 pseudogene 8","termid":"PBO:0056435"}


id: MONDO:0008577
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"toe, misshapen","secondary_identifiers":["UMLS:C1861061","OMIM:189100","MEDGEN:396052"],"synonyms":[{"name":"toe, misshapen","type":"exact"}],"termid":"MONDO:0008577","xrefs":{"Monarch":{"xref_id":"0008577"}}}


id: MONDO:0002827
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete urinary system cancer (obsolete MONDO:0002827)","termid":"MONDO:0002827","xrefs":{"Monarch":{"xref_id":"0002827"}}}


id: PR:Q9UU83
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pal1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9UU83"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein pal1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCP1E11.04c","synonyms":[{"name":"Spom972h-pal1","type":"exact"},{"name":"pears and lemons protein 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9UU83"}


id: PBO:0031058
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_mixed_population_including_spores_and_divided_germinated_spores_(obsolete_FYPO:0000319)","termid":"PBO:0031058"}


id: PBO:0059152
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAGUK p55 scaffold protein 4","termid":"PBO:0059152"}


id: PBO:0087694
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the oligosaccharyltransferase complex of the ER lumen; complex catalyzes protein asparagine-linked glycosylation; type I membrane protein required for incorporation of Ost3p or Ost6p into the OST complex","termid":"PBO:0087694"}


id: PR:O94594
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC622.04 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94594"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized membrane protein C622.04 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC622.04","synonyms":[{"name":"Spom972h-SPCC622.04","type":"exact"}],"termid":"PR:O94594"}


id: PBO:0028602
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_protein_level_during_cellular_response_to_glucose_starvation","termid":"PBO:0028602"}


id: PBO:0028351
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_CENP-A_containing_chromatin_organization","termid":"PBO:0028351"}


id: GO:0036428
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: adenosylcobinamide + GTP = adenosylcobinamide phosphate + GDP + H+.","definition_xrefs":["GOC:rynl"],"gene_count":0,"genotype_count":0,"name":"obsolete adenosylcobinamide kinase (GTP-specific) activity (obsolete GO:0036428)","termid":"GO:0036428"}


id: MONDO:0000318
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete wound botulism (obsolete MONDO:0000318)","termid":"MONDO:0000318","xrefs":{"Monarch":{"xref_id":"0000318"}}}


id: SO:0000708
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A trans_splicing_acceptor_site which appends the 22nt SL1 RNA leader sequence to the 5' end of most mRNAs.","definition_xrefs":["SO:nlw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trans_splice_acceptor_site","termid":"SO:0000706"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SL1_acceptor_site","synonyms":[{"name":"SL1 acceptor site","type":"exact"}],"termid":"SO:0000708"}


id: GO:0003830
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + beta-D-mannosyl-R = UDP + 4-(N-acetyl-beta-D-glucosaminyl)-beta-D-mannosyl-R.","definition_xrefs":["EC:2.4.1.144"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetylglucosaminyltransferase activity","termid":"GO:0008375"},{"relation_name":"is_a","term_name":"catalytic activity, acting on a glycoprotein","termid":"GO:0140103"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016757"}],"interesting_parent_ids":["GO:0016757","GO:0003824","GO:0016740","GO:0140096","GO:0003674"],"is_obsolete":false,"name":"beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity","secondary_identifiers":["Reactome:R-HSA-975926","MetaCyc:2.4.1.144-RXN","RHEA:15509"],"synonyms":[{"name":"GnTIII activity","type":"related"},{"name":"N-acetylglucosaminyltransferase III activity","type":"related"},{"name":"N-glycosyl-oligosaccharide-glycoprotein N-acetylglucosaminyltransferase III activity","type":"related"},{"name":"UDP-N-acetyl-D-glucosamine:beta-D-mannosyl-glycoprotein 4-beta-N-acetyl-D-glucosaminyltransferase activity","type":"related"},{"name":"beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase activity","type":"related"},{"name":"beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase activity","type":"related"},{"name":"uridine diphosphoacetylglucosamine-glycopeptide beta-4-acetylglucosaminyltransferase III activity","type":"related"},{"name":"uridine diphosphoacetylglucosamine-glycopeptide beta4-acetylglucosaminyltransferase III","type":"related"}],"termid":"GO:0003830"}


id: GO:0043185
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a vascular endothelial growth factor receptor 3.","definition_xrefs":["GOC:st"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vascular endothelial growth factor receptor binding","termid":"GO:0005172"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"vascular endothelial growth factor receptor 3 binding","synonyms":[{"name":"VEGF receptor 3 binding","type":"exact"},{"name":"VEGFR 3 binding","type":"exact"},{"name":"fms-like-tyrosine kinase (Flt)-4 binding","type":"exact"}],"termid":"GO:0043185"}


id: PBO:0039863
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARHGAP26 antisense RNA 1","termid":"PBO:0039863"}


id: GO:0050639
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 10-desacetyltaxuyunnanin C + acetyl-CoA = CoA + taxuyunnanin C.","definition_xrefs":["EC:2.3.1.163","RHEA:18837"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acetyltransferase activity","termid":"GO:0016413"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016746"],"is_obsolete":false,"name":"10-hydroxytaxane O-acetyltransferase activity","secondary_identifiers":["MetaCyc:2.3.1.163-RXN","KEGG_REACTION:R07252"],"synonyms":[{"name":"acetyl coenzyme A: 10-hydroxytaxane O-acetyltransferase activity","type":"related"},{"name":"acetyl coenzyme A:10-hydroxytaxane O-acetyltransferase activity","type":"related"},{"name":"acetyl-CoA:taxan-10beta-ol O-acetyltransferase","type":"broad"}],"termid":"GO:0050639"}


id: GO:0044809
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of chemokine (C-C motif) ligand 17 (CCL17) due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:rv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chemokine production","termid":"GO:0032602"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"chemokine (C-C motif) ligand 17 production","synonyms":[{"name":"CCL17 production","type":"exact"},{"name":"TARC production","type":"exact"},{"name":"thymus and activation regulated chemokine production","type":"exact"}],"termid":"GO:0044809"}


id: PBO:0039871
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho GTPase activating protein 29","termid":"PBO:0039871"}


id: GO:0075339
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of the increase in size or mass of an organism, or the progression of an organism from an initial condition to a later condition, occurring in, on or near the exterior of its host organism.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of growth or development of symbiont during interaction with host (obsolete GO:0075339)","synonyms":[{"name":"positive regulation of growth or development of symbiont during interaction with host","type":"exact"}],"termid":"GO:0075339"}


id: PBO:0116615
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3141","termid":"PBO:0116615"}


id: PBO:0043468
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCR4-NOT transcription complex subunit 7","termid":"PBO:0043468"}


id: PBO:0056842
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase","termid":"PBO:0056842"}


id: FYPO:0006145
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of RNA measured in a cell during a cellular response to copper ions is lower than normal during the meiotic cell cycle. Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah","PMID:24569997"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level during meiotic cell cycle","termid":"FYPO:0004630"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0006551","FYPO:0005447","FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"decreased RNA level during cellular response to copper ion during meiotic cell cycle","synonyms":[{"name":"decreased RNA accumulation during cellular response to copper ion during meiotic cell cycle","type":"related"},{"name":"decreased RNA level during cellular response to copper during meiotic cell cycle","type":"exact"},{"name":"decreased RNA level during meiotic cell cycle during copper excess","type":"related"},{"name":"decreased transcript level during cellular response to copper ion during meiotic cell cycle","type":"exact"},{"name":"reduced RNA level during cellular response to copper ion during meiotic cell cycle","type":"exact"}],"termid":"FYPO:0006145"}


id: PBO:0066309
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RBPJ pseudogene 3","termid":"PBO:0066309"}


id: PBO:0066901
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 202","termid":"PBO:0066901"}


id: PBO:0061436
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear receptor subfamily 2 group C member 1","termid":"PBO:0061436"}


id: GO:2000145
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cell motility.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of locomotion","termid":"GO:0040012"},{"relation_name":"is_a","term_name":"regulation of cellular process","termid":"GO:0050794"},{"relation_name":"regulates","term_name":"cell motility","termid":"GO:0048870"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cell motility","secondary_identifiers":["Reactome:R-HSA-6785631"],"synonyms":[{"name":"regulation of cell locomotion","type":"exact"},{"name":"regulation of cell movement","type":"related"},{"name":"regulation of movement of a cell","type":"exact"}],"termid":"GO:2000145"}


id: PBO:0111447
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator complex cyclin-dependent protein kinase subunit Srb10","termid":"PBO:0111447"}


id: MONDO:0004373
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A papillary meningioma occurring in adults.","definition_xrefs":["NCIT:C8293"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rhabdoid meningioma","termid":"MONDO:0003262"},{"relation_name":"is_a","term_name":"papillary meningioma","termid":"MONDO:0021088"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"adult papillary meningioma","secondary_identifiers":["DOID:7826","MEDGEN:76256","UMLS:C0281334"],"synonyms":[{"name":"adult papillary meningioma","type":"exact"},{"name":"papillary meningioma","type":"broad"},{"name":"papillary meningioma of adults","type":"exact"}],"termid":"MONDO:0004373","xrefs":{"Monarch":{"xref_id":"0004373"}}}


id: MONDO:0030048
data:
  {"annotated_genes":["SJAG_04944"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87251],"is_not":false,"summary":null,"term":"MONDO:0030048"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"CPOX-related hereditary coproporphyria","termid":"MONDO:0800180"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04944":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0019142"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0019142","MONDO:0005066"],"is_obsolete":false,"name":"harderoporphyria","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MEDGEN:137981","MESH:C562816","Orphanet:659672","icd11.foundation:1664486132","UMLS:C0342859","OMIM:618892"],"synonyms":[{"name":"HARDEROPORPHYRIA","type":"exact"},{"name":"HARPO","type":"exact"},{"name":"harderoporphyria","type":"exact"}],"termid":"MONDO:0030048","terms_by_termid":{"MONDO:0030048":null},"xrefs":{"Monarch":{"xref_id":"0030048"}}}


id: PBO:0068573
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U2 small nuclear 24, pseudogene","termid":"PBO:0068573"}


id: PBO:0017554
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Bypass of Yeast Ras","termid":"PBO:0017554"}


id: GO:1990183
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A circulatory process that occurs at the level of the lymphatic vasculature.","definition_xrefs":["PMID:21576390"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vascular process in circulatory system","termid":"GO:0003018"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"lymphatic vascular process in circulatory system","termid":"GO:1990183"}


id: GO:0039535
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of the RIG-I signaling pathway.","definition_xrefs":["GOC:bf","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cytoplasmic pattern recognition receptor signaling pathway","termid":"GO:0039531"},{"relation_name":"regulates","term_name":"RIG-I signaling pathway","termid":"GO:0039529"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of RIG-I signaling pathway","synonyms":[{"name":"regulation of DDX58 signaling pathway","type":"exact"},{"name":"regulation of RIG-I signalling pathway","type":"exact"},{"name":"regulation of retinoic acid inducible gene I signaling pathway","type":"exact"}],"termid":"GO:0039535"}


id: PBO:0051443
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"immunoglobulin lambda variable 3-29 (pseudogene)","termid":"PBO:0051443"}


id: GO:0072238
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a metanephric long nephron over time, from its formation to the mature structure. Long nephrons are associated with juxtamedullary glomeruli and extend into the inner medulla in the metanephros.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"long nephron development","termid":"GO:0072029"},{"relation_name":"is_a","term_name":"metanephric nephron development","termid":"GO:0072210"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric long nephron development","synonyms":[{"name":"metanephric juxtamedullary nephron development","type":"related"}],"termid":"GO:0072238"}


id: PBO:0026856
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-elongated_cell_during_glucose_starvation","termid":"PBO:0026856"}


id: GO:0052822
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: DNA containing 3-methylguanine + H2O = DNA with abasic site + 3-methylguanine. This reaction is the hydrolysis of DNA by cleavage of the N-C1' glycosidic bond between the damaged DNA 3-methylguanine and the deoxyribose sugar to remove the 3-methylguanine, leaving an abasic site.","definition_xrefs":["GOC:elh","PMID:9224623","PMID:10872450"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA-3-methylbase glycosylase activity","termid":"GO:0043733"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140097"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0140097","GO:0016787","GO:0016798"],"is_obsolete":false,"name":"DNA-3-methylguanine glycosylase activity","termid":"GO:0052822"}


id: FYPO:0006114
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of protein measured in a cell during S phase of the mitotic cell cycle is higher than normal. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein level during vegetative growth","termid":"FYPO:0001327"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0006551","FYPO:0000002"],"is_obsolete":false,"name":"increased protein level during mitotic S phase","synonyms":[{"name":"increased protein accumulation during mitotic S phase","type":"related"},{"name":"increased protein level during S phase of mitotic cell cycle","type":"related"},{"name":"increased protein level during mitotic S phase during vegetative growth","type":"exact"}],"termid":"FYPO:0006114"}


id: PBO:0035810
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_histone_H2A_phosphorylation_during_vegetative_growth","termid":"PBO:0035810"}


id: PBO:0003036
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alanine racemase Alr2 (predicted)","termid":"PBO:0003036"}


id: PBO:0075178
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNRPE pseudogene 8","termid":"PBO:0075178"}


id: MONDO:0000281
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Chapare hemorrhagic fever (obsolete MONDO:0000281)","termid":"MONDO:0000281","xrefs":{"Monarch":{"xref_id":"0000281"}}}


id: MONDO:0030044
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"pseudo-TORCH syndrome","termid":"MONDO:0009626"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025"],"is_obsolete":false,"name":"pseudo-TORCH syndrome 3","secondary_identifiers":["OMIM:618886","MEDGEN:1708513","UMLS:C5394391"],"synonyms":[{"name":"PSEUDO-TORCH SYNDROME 3","type":"exact"},{"name":"PTORCH3","type":"exact"},{"name":"pseudo-torch syndrome 3","type":"exact"}],"termid":"MONDO:0030044","xrefs":{"Monarch":{"xref_id":"0030044"}}}


id: PBO:0117178
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CTIF antisense RNA 1","termid":"PBO:0117178"}


id: GO:0034373
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The acquisition, loss or modification of a protein or lipid within an intermediate-density lipoprotein particle.","definition_xrefs":["GOC:mah","GOC:BHF","GOC:expert_pt","GOC:rl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"triglyceride-rich lipoprotein particle remodeling","termid":"GO:0034370"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"intermediate-density lipoprotein particle remodeling","synonyms":[{"name":"IDL remodeling","type":"exact"},{"name":"IDL remodelling","type":"exact"},{"name":"intermediate-density lipoprotein particle formation","type":"related"},{"name":"intermediate-density lipoprotein particle remodelling","type":"exact"}],"termid":"GO:0034373"}


id: GO:0047531
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2-oxoglutarate + ornithine = 5-amino-2-oxopentanoate + L-glutamate.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete 2,5-diaminovalerate transaminase activity (obsolete GO:0047531)","synonyms":[{"name":"2,5-diaminovalerate aminotransferase activity","type":"exact"}],"termid":"GO:0047531"}


id: GO:2001225
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of chloride transport.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of monoatomic anion transport","termid":"GO:0044070"},{"relation_name":"regulates","term_name":"chloride transport","termid":"GO:0006821"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of chloride transport","termid":"GO:2001225"}


id: GO:0032229
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of GABAergic synaptic transmission, the process of communication from a neuron to another neuron across a synapse using the neurotransmitter gamma-aminobutyric acid (GABA).","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of synaptic transmission, GABAergic","termid":"GO:0032228"},{"relation_name":"is_a","term_name":"negative regulation of synaptic transmission","termid":"GO:0050805"},{"relation_name":"negatively_regulates","term_name":"synaptic transmission, GABAergic","termid":"GO:0051932"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0023052"},{"rel_name":"regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"negative regulation of synaptic transmission, GABAergic","synonyms":[{"name":"down regulation of synaptic transmission, GABAergic","type":"exact"},{"name":"down-regulation of synaptic transmission, GABAergic","type":"exact"},{"name":"downregulation of synaptic transmission, GABAergic","type":"exact"},{"name":"inhibition of synaptic transmission, GABAergic","type":"narrow"}],"termid":"GO:0032229"}


id: PBO:0036464
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial protein, possibly DNA damage related nuclease (predicted)","termid":"PBO:0036464"}


id: GO:1901215
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of neuron death.","definition_xrefs":["GOC:rph","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of neuron death (obsolete GO:1901215)","synonyms":[{"name":"down regulation of neuron cell death","type":"exact"},{"name":"down regulation of neuron death","type":"exact"},{"name":"down regulation of neuronal cell death","type":"exact"},{"name":"down-regulation of neuron cell death","type":"exact"},{"name":"down-regulation of neuron death","type":"exact"},{"name":"down-regulation of neuronal cell death","type":"exact"},{"name":"downregulation of neuron cell death","type":"exact"},{"name":"downregulation of neuron death","type":"exact"},{"name":"downregulation of neuronal cell death","type":"exact"},{"name":"inhibition of neuron cell death","type":"narrow"},{"name":"inhibition of neuron death","type":"narrow"},{"name":"inhibition of neuronal cell death","type":"narrow"},{"name":"negative regulation of neuron cell death","type":"exact"},{"name":"negative regulation of neuronal cell death","type":"exact"}],"termid":"GO:1901215"}


id: PBO:0039317
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ALMS1 intronic transcript 1","termid":"PBO:0039317"}


id: GO:0033225
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the directed movement of 2-aminoethylphosphonate from one side of a membrane to the other by catalysis of the reaction: ATP + H2O + 2-aminoethylphosphonate(out) = ADP + phosphate + 2-aminoethylphosphonate(in).","definition_xrefs":["GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ATPase-coupled transmembrane transporter activity","termid":"GO:0042626"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"ATPase-coupled 2-aminoethylphosphonate transporter activity","secondary_identifiers":["RHEA:32775","GO:0033224"],"synonyms":[{"name":"2-aminoethylphosphonate transmembrane transporter activity","type":"related"},{"name":"2-aminoethylphosphonate transporting ATPase activity","type":"related"},{"name":"2-aminoethylphosphonate-transporting ATPase activity","type":"exact"},{"name":"2-phosphonoethylamine transmembrane transporter activity","type":"related"},{"name":"2-phosphonoethylamine transporting ATPase activity","type":"exact"},{"name":"ATP-dependent 2-aminoethylphosphonate transporter activity","type":"exact"},{"name":"ciliatine transporter activity","type":"related"},{"name":"ciliatine transportingATPase activity","type":"exact"}],"termid":"GO:0033225"}


id: PBO:0047715
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"flavin containing dimethylaniline monoxygenase 6, pseudogene","termid":"PBO:0047715"}


id: MONDO:0850088
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"familial primary hypomagnesemia","termid":"MONDO:0018100"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005240"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0005240"],"is_obsolete":false,"name":"EGF-related primary hypomagnesemia with intellectual disability","secondary_identifiers":["Orphanet:620368","MEDGEN:1843381","UMLS:C5681825","GARD:22485"],"termid":"MONDO:0850088","xrefs":{"Monarch":{"xref_id":"0850088"}}}


id: PBO:0072133
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S15a pseudogene 10","termid":"PBO:0072133"}


id: GO:0016035
data:
  {"annotated_genes":["SJAG_00153","SJAG_00611"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[79469,104798],"is_not":false,"summary":null,"term":"GO:0016035"}]},"cv_name":"cellular_component","definition":"A heterodimeric DNA polymerase complex that catalyzes error-prone DNA synthesis in contexts such as translesion synthesis and double-stranded break repair. First characterized in Saccharomyces, in which the subunits are Rev3p and Rev7p; a third protein, Rev1p, is often associated with the polymerase dimer.","definition_xrefs":["PMID:16631579","PMID:16971464"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA polymerase complex","termid":"GO:0042575"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00153":null,"SJAG_00611":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"zeta DNA polymerase complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0016035","terms_by_termid":{"GO:0016035":null}}


id: FYPO:0000602
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which progression through the G1 phase of the mitotic cell cycle is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cellular process during vegetative growth","termid":"FYPO:0001362"},{"relation_name":"is_a","term_name":"abnormal mitotic cell cycle phase","termid":"FYPO:0002736"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000631","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abnormal mitotic G1 phase progression","synonyms":[{"name":"abnormal G1 phase progression during mitotic cell cycle","type":"exact"},{"name":"abnormal mitotic G1 phase progression during vegetative growth","type":"exact"},{"name":"abnormal mitotic cell cycle progression in G1","type":"exact"},{"name":"mitotic cell cycle progression in G1 phase: abnormal","type":"related"}],"termid":"FYPO:0000602"}


id: GO:0050988
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The carboxylation of the N-terminal methionine of proteins to form the derivative N-carboxy-L-methionine.","definition_xrefs":["RESID:AA0363"],"gene_count":0,"genotype_count":0,"name":"obsolete N-terminal peptidyl-methionine carboxylation (obsolete GO:0050988)","termid":"GO:0050988"}


id: PATO:0002496
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed dorsolaterally.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"orientation","termid":"PATO:0000133"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dorsolateral orientation","synonyms":[{"name":"dorsolaterally directed","type":"exact"}],"termid":"PATO:0002496"}


id: PBO:0043974
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cysteine sulfinic acid decarboxylase","termid":"PBO:0043974"}


id: GO:0034590
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of L-hydroxyproline from one side of a membrane to the other.","definition_xrefs":["GOC:mah","PMID:14502423"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monocarboxylic acid transmembrane transporter activity","termid":"GO:0008028"},{"relation_name":"is_a","term_name":"L-amino acid transmembrane transporter activity","termid":"GO:0015179"},{"relation_name":"is_a","term_name":"modified amino acid transmembrane transporter activity","termid":"GO:0072349"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0005215","GO:0022857","GO:0003674"],"is_obsolete":false,"name":"L-hydroxyproline transmembrane transporter activity","secondary_identifiers":["Reactome:R-HSA-6784213"],"synonyms":[{"name":"4-hydroxyproline transmembrane transporter activity","type":"broad"}],"termid":"GO:0034590"}


id: FYPO:0002520
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell population phenotype in which a smaller than normal proportion of cells in the population undergoes conjugation with wild type h+ cells.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased conjugation frequency","termid":"FYPO:0000303"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"decreased frequency of conjugation with h+ cells","synonyms":[{"name":"decreased conjugation with WT h+ cells","type":"exact"},{"name":"decreased frequency of conjugation with h plus cells","type":"exact"},{"name":"decreased frequency of mating with h+ cells","type":"exact"},{"name":"reduced frequency of conjugation with h+ cells","type":"exact"}],"termid":"FYPO:0002520"}


id: FYPO:0003441
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to all or part of the actin cytoskeleton is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal protein localization to cytoskeleton during vegetative growth","termid":"FYPO:0003184"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0001312","FYPO:0001320","FYPO:0000257"],"is_obsolete":false,"name":"normal protein localization to actin cytoskeleton during vegetative growth","synonyms":[{"name":"normal protein localisation to actin cytoskeleton during vegetative growth","type":"exact"},{"name":"normal protein localization to actin cytoskeleton during mitotic cell cycle","type":"related"}],"termid":"FYPO:0003441"}


id: PBO:0029886
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_stress_granule_disassembly","termid":"PBO:0029886"}


id: GO:1903054
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of extracellular matrix organization.","definition_xrefs":["GOC:rl","GO_REF:0000058","GOC:BHF","PMID:22357537","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cellular component organization","termid":"GO:0051129"},{"relation_name":"is_a","term_name":"regulation of extracellular matrix organization","termid":"GO:1903053"},{"relation_name":"negatively_regulates","term_name":"extracellular matrix organization","termid":"GO:0030198"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of extracellular matrix organization","synonyms":[{"name":"down regulation of extracellular matrix organisation","type":"exact"},{"name":"down regulation of extracellular matrix organization","type":"exact"},{"name":"down regulation of extracellular matrix organization and biogenesis","type":"related"},{"name":"down-regulation of extracellular matrix organisation","type":"exact"},{"name":"down-regulation of extracellular matrix organization","type":"exact"},{"name":"down-regulation of extracellular matrix organization and biogenesis","type":"related"},{"name":"downregulation of extracellular matrix organisation","type":"exact"},{"name":"downregulation of extracellular matrix organization","type":"exact"},{"name":"downregulation of extracellular matrix organization and biogenesis","type":"related"},{"name":"inhibition of extracellular matrix organisation","type":"narrow"},{"name":"inhibition of extracellular matrix organization","type":"narrow"},{"name":"inhibition of extracellular matrix organization and biogenesis","type":"related"},{"name":"negative regulation of extracellular matrix organisation","type":"exact"},{"name":"negative regulation of extracellular matrix organization and biogenesis","type":"related"}],"termid":"GO:1903054"}


id: PBO:0041723
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium/calmodulin dependent protein kinase ID","termid":"PBO:0041723"}


id: GO:0017119
data:
  {"annotated_genes":["SJAG_02211","SJAG_00041","SJAG_03158","SJAG_00578","SJAG_03054","SJAG_01459","SJAG_01071"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[71372,72062,77101,79158,90801,111463,118838],"is_not":false,"summary":null,"term":"GO:0017119"}]},"cv_name":"cellular_component","definition":"A multisubunit tethering complex of the CATCHR family (complexes associated with tethering containing helical rods) that has a role in tethering vesicles to the Golgi prior to fusion. Composed of 8 subunits COG1-8.","definition_xrefs":["PMID:11980916","GOC:krc","PMID:20972446","PMID:9792665"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle tethering complex","termid":"GO:0099023"},{"relation_name":"part_of","term_name":"Golgi apparatus","termid":"GO:0005794"}],"gene_count":7,"genes_by_uniquename":{"SJAG_00041":null,"SJAG_00578":null,"SJAG_01071":null,"SJAG_01459":null,"SJAG_02211":null,"SJAG_03054":null,"SJAG_03158":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"part_of","termid":"GO:0005794"}],"interesting_parent_ids":["GO:0005794","GO:0005737","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"Golgi transport complex","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"COG complex","type":"exact"},{"name":"Sec34/35 complex","type":"narrow"},{"name":"conserved oligomeric Golgi complex","type":"exact"}],"termid":"GO:0017119","terms_by_termid":{"GO:0017119":null}}


id: MONDO:0018173
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Acute opioid poisoning is a rare intoxication with opioids, a large group of alkaloid analgesics, mainly characterized by miosis (pinpoint pupil), respiratory depression (bradypnea/apnea) and central nervous system depression (sedation or coma). Other manifestations include hypotension, reduced bowel motility, hypothermia and hypoglycemia. Naloxone, a competitive inhibitor of the mu-opioid receptor, is a potent antagonist and is used as the antidote for opioid intoxication.","definition_xrefs":["Orphanet:35889"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acute disease","termid":"MONDO:0020683"},{"relation_name":"is_a","term_name":"poisoning","termid":"MONDO:0029000"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acute opioid poisoning","secondary_identifiers":["icd11.foundation:1395283456"],"termid":"MONDO:0018173","xrefs":{"Monarch":{"xref_id":"0018173"}}}


id: GO:0035374
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to chondroitin sulfate, a glycosaminoglycan made up of two alternating monosaccharides: D-glucuronic acid (GlcA) and N-acetyl-D-galactosamine (GalNAc).","definition_xrefs":["ISBN:0198506732","GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycosaminoglycan binding","termid":"GO:0005539"},{"relation_name":"is_a","term_name":"sulfur compound binding","termid":"GO:1901681"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0005488","GO:0003674"],"is_obsolete":false,"name":"chondroitin sulfate binding","termid":"GO:0035374"}


id: MONDO:0008930
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"celiac disease, susceptibility to, 1","secondary_identifiers":["OMIM:212750","MEDGEN:395227","UMLS:C1859310"],"synonyms":[{"name":"CELIAC1","type":"related"},{"name":"celiac disease, susceptibility to","type":"exact"},{"name":"celiac disease, susceptibility to, 1","type":"exact"},{"name":"celiac disease, susceptibility to, type 1","type":"exact"},{"name":"celiac sprue, susceptibility to, 1","type":"related"},{"name":"coeliac disease, susceptibility to","type":"exact"},{"name":"coeliac disease, susceptibility to, type 1","type":"exact"},{"name":"coeliac sprue, susceptibility to, 1","type":"related"},{"name":"gluten-sensitive enteropathy, susceptibility to, 1","type":"related"},{"name":"susceptibility to celiac disease 1","type":"related"},{"name":"susceptibility to coeliac disease 1","type":"related"}],"termid":"MONDO:0008930","xrefs":{"Monarch":{"xref_id":"0008930"}}}


id: PBO:0077739
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tenascin XB","termid":"PBO:0077739"}


id: PBO:0069354
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 614, pseudogene","termid":"PBO:0069354"}


id: SO:0000100
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A proviral gene with origin endogenous retrovirus.","definition_xrefs":["SO:xp"],"direct_ancestors":[{"relation_name":"has_origin","term_name":"endogenous_retroviral_sequence","termid":"SO:0000903"},{"relation_name":"is_a","term_name":"proviral_gene","termid":"SO:0000099"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous_retroviral_gene","synonyms":[{"name":"endogenous retroviral gene","type":"exact"}],"termid":"SO:0000100"}


id: MONDO:0700235
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any retinopathy caused by variants in the RD3 gene.","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited retinal dystrophy","termid":"MONDO:0019118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"RD3-related retinopathy","synonyms":[{"name":"RD3-related retinopathy","type":"exact"}],"termid":"MONDO:0700235","xrefs":{"Monarch":{"xref_id":"0700235"}}}


id: FYPO:0007851
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which spindle assembly does not occur during the first meiotic nuclear division.","definition_xrefs":["PomBase:mah","PMID:34346498"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abolished cellular process","termid":"FYPO:0005449"},{"relation_name":"is_a","term_name":"abnormal spindle assembly during meiosis I","termid":"FYPO:0007745"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000631","FYPO:0000002","FYPO:0005447","FYPO:0000054"],"is_obsolete":false,"name":"abolished spindle assembly during meiosis I","synonyms":[{"name":"abolished meiosis I spindle assembly","type":"exact"},{"name":"abolished spindle assembly during first meiotic nuclear division","type":"exact"}],"termid":"FYPO:0007851"}


id: MONDO:0016258
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An uncommon malignant neoplasm arising from the uterine corpus. It is characterized by the presence of a malignant epithelial component and a benign mesenchymal (usually fibrous) component.","definition_xrefs":["NCIT:C40182"],"direct_ancestors":[{"relation_name":"is_a","term_name":"uterine body mixed cancer","termid":"MONDO:0002879"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"uterine corpus carcinofibroma","secondary_identifiers":["MEDGEN:364874","Orphanet:213605","GARD:20474","UMLS:C1883485","ICDO:8934/3"],"synonyms":[{"name":"Carcinofibroma of the corpus uteri","type":"related"},{"name":"uterine corpus Carcinofibroma","type":"exact"}],"termid":"MONDO:0016258","xrefs":{"Monarch":{"xref_id":"0016258"}}}


id: MONDO:0017521
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hyperphalangy","termid":"MONDO:0017455"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"hyperphalangy, unilateral","secondary_identifiers":["Orphanet:295140","icd11.foundation:1023621052"],"synonyms":[{"name":"hyperphalangy in digits 2-5","type":"exact"},{"name":"supernumerary phalanges, unilateral","type":"exact"},{"name":"supernumerary phalanx, unilateral","type":"exact"}],"termid":"MONDO:0017521","xrefs":{"Monarch":{"xref_id":"0017521"}}}


id: PBO:0017729
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNARE Use1 (predicted)","termid":"PBO:0017729"}


id: PBO:0063957
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol-4-phosphate 5-kinase type 1 alpha","termid":"PBO:0063957"}


id: GO:1901730
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of monensin A.","definition_xrefs":["GOC:yaf","GOC:TermGenie","UniPathway:UPA00178"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alcohol biosynthetic process","termid":"GO:0046165"},{"relation_name":"is_a","term_name":"carboxylic acid biosynthetic process","termid":"GO:0046394"},{"relation_name":"is_a","term_name":"monensin A metabolic process","termid":"GO:1901728"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"monensin A biosynthetic process","synonyms":[{"name":"monensin A anabolism","type":"exact"},{"name":"monensin A biosynthesis","type":"exact"},{"name":"monensin A formation","type":"exact"},{"name":"monensin A synthesis","type":"exact"},{"name":"monensin anabolism","type":"exact"},{"name":"monensin biosynthesis","type":"exact"},{"name":"monensin formation","type":"exact"},{"name":"monensin synthesis","type":"exact"}],"termid":"GO:1901730"}


id: PBO:0076727
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"T cell leukemia/lymphoma 6","termid":"PBO:0076727"}


id: PBO:0070076
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6atac small nuclear 33, pseudogene","termid":"PBO:0070076"}


id: MONDO:0017970
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete 46,XY disorder of sex development due to impaired androgen production (obsolete MONDO:0017970)","secondary_identifiers":["Orphanet:325357"],"synonyms":[{"name":"46,XY DSD due to impaired androgen production","type":"exact"}],"termid":"MONDO:0017970","xrefs":{"Monarch":{"xref_id":"0017970"}}}


id: MOD:00084
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-lysine residue to N6,N6-dimethyl-L-lysine.","definition_xrefs":["PubMed:8453381","PubMed:10550045","PubMed:3100523","PubMed:12964758","RESID:AA0075","OMSSA:36","Unimod:36#K","PubMed:14570711"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dimethylated residue","termid":"MOD:00429"},{"relation_name":"is_a","term_name":"N-methylated residue","termid":"MOD:00602"},{"relation_name":"is_a","term_name":"methylated lysine","termid":"MOD:00663"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"N6,N6-dimethyl-L-lysine","synonyms":[{"name":"(2S)-2-amino-6-(dimethylamino)hexanoic acid","type":"exact"},{"name":"Dimethyl","type":"related"},{"name":"MOD_RES N6,N6-dimethyllysine","type":"exact"},{"name":"N(zeta)-dimethyllysine","type":"exact"},{"name":"N6,N6-dimethyl-L-lysine","type":"exact"},{"name":"N6,N6-dimethylated L-lysine","type":"exact"},{"name":"N6Me2Lys","type":"exact"},{"name":"di-Methylation","type":"related"},{"name":"dimethylk","type":"exact"},{"name":"epsilon-dimethyllysine","type":"exact"},{"name":"lysine derivative Lys(y)","type":"exact"}],"termid":"MOD:00084"}


id: PBO:0079540
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin like modifier activating enzyme 1","termid":"PBO:0079540"}


id: PBO:0074334
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMARCAL1 antisense RNA 1","termid":"PBO:0074334"}


id: FYPO:0001461
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the intracellular calcium ion (Ca2+) concentration briefly increases normally immediately following an extracellular Ca2+ stimulus. Normally, the intracellular Ca2+ concentration increases to a peak in a \\\"burst\\\" within one minute, and then decreases to a new steady-state concentration.","definition_xrefs":["PMID:21811607","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular calcium level","termid":"FYPO:0001199"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000257","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"normal immediate intracellular calcium spike following extracellular calcium stimulus","synonyms":[{"name":"normal immediate intracellular calcium spike following extracellular calcium stimulus during mitotic cell cycle","type":"related"},{"name":"normal immediate intracellular calcium spike following extracellular calcium stimulus during vegetative growth","type":"exact"}],"termid":"FYPO:0001461"}


id: FYPO:0009015
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population phenotype in which a larger than normal proportion of cells is viable when grown with glycerol as carbon source. In High Throughput Phenotyping this is typically assessed using phloxine as a dye.","direct_ancestors":[{"relation_name":"is_a","term_name":"increased vegetative cell population viability","termid":"FYPO:0009008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0002057"],"is_obsolete":false,"name":"increased cell population viability on glycerol carbon source","synonyms":[{"name":"increased cell population viability during vegetative growth on glycerol carbon source","type":"exact"}],"termid":"FYPO:0009015"}


id: GO:0061427
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter and stops, prevents or reduces the frequency, rate or extent of a ceramide biosynthetic process.","definition_xrefs":["GOC:dph","PMID:15302821"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of ceramide biosynthetic process by negative regulation of transcription from RNA Polymerase II promoter (obsolete GO:0061427)","termid":"GO:0061427"}


id: MONDO:0003976
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A type AB thymoma which is characterized by an aggressive clinical course (capsular invasion, infiltration of the surrounding tissues) and can metastasize.","definition_xrefs":["NCIT:C6886"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thymic carcinoma","termid":"MONDO:0006451"},{"relation_name":"is_a","term_name":"thymoma type AB","termid":"MONDO:0016975"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0004992","MONDO:0005570"],"is_obsolete":false,"name":"malignant type AB thymoma","secondary_identifiers":["ICDO:8582/3","MEDGEN:224760","UMLS:C1266093","DOID:6723"],"synonyms":[{"name":"malignant thymoma type AB","type":"exact"},{"name":"malignant type AB thymoma","type":"exact"},{"name":"thymoma type AB, malignant","type":"exact"},{"name":"thymoma, mixed type, malignant","type":"exact"}],"termid":"MONDO:0003976","xrefs":{"Monarch":{"xref_id":"0003976"}}}


id: PBO:0041320
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chromosome 2 open reading frame 72","termid":"PBO:0041320"}


id: GO:0120193
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a tight junction. A tight junction seals cells together in an epithelium in a way that prevents even small molecules from leaking from one side of the sheet to the other.","definition_xrefs":["GOC:rl","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell junction organization","termid":"GO:0045216"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"tight junction organization","synonyms":[{"name":"occluding cell junction organization","type":"exact"},{"name":"occluding junction organization","type":"exact"}],"termid":"GO:0120193"}


id: GO:0034305
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of spore formation from the products of mitosis.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of sporulation","termid":"GO:0043937"},{"relation_name":"is_a","term_name":"regulation of asexual reproduction","termid":"GO:1903664"},{"relation_name":"regulates","term_name":"asexual sporulation","termid":"GO:0030436"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of asexual sporulation","synonyms":[{"name":"regulation of asexual spore formation","type":"exact"},{"name":"regulation of mitotic spore formation","type":"exact"},{"name":"regulation of mitotic sporulation","type":"exact"}],"termid":"GO:0034305"}


id: GO:0097408
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Cellular inclusion consisting of circular areas filled with fine slender filaments about 10 nanometers in diameter, delimited by a wall of varying complexity (either a single continuous membrane or a tubular network consisting of a fine filamentous material giving the wall a honeycomb appearance). Fibrillary inclusions are found in the cytoplasm of giant cells of Dieters in the lateral vestibular nucleus of the rat; similar structures have been described in the ventral cochlear nucleus, spinal cord, and substantia nigra.","definition_xrefs":["NIF_Subcellular:sao967812059"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inclusion body","termid":"GO:0016234"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"fibrillary inclusion","termid":"GO:0097408"}


id: GO:0033487
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of pelargonidin 3-O-glucoside, a basic anthocyanin responsible for red to magenta coloration of flowers and fruits.","definition_xrefs":["MetaCyc:PWY-5125","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"flavonoid biosynthetic process","termid":"GO:0009813"},{"relation_name":"is_a","term_name":"beta-glucoside biosynthetic process","termid":"GO:1901806"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pelargonidin 3-O-glucoside biosynthetic process","synonyms":[{"name":"pelargonidin 3-O-glucoside anabolism","type":"exact"},{"name":"pelargonidin 3-O-glucoside biosynthesis","type":"exact"},{"name":"pelargonidin 3-O-glucoside formation","type":"exact"},{"name":"pelargonidin 3-O-glucoside synthesis","type":"exact"}],"termid":"GO:0033487"}


id: GO:0070334
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of an alpha6-beta4 integrin complex bound to laminin 5.","definition_xrefs":["PMID:7556090","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane protein complex","termid":"GO:0098797"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005886"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005886","GO:0032991","GO:0005575"],"is_obsolete":false,"name":"alpha6-beta4 integrin-laminin 5 complex","synonyms":[{"name":"ITGA6-ITGB4-LAMA5 complex","type":"narrow"},{"name":"alpha6-beta4 integrin-laminin-332 complex","type":"exact"}],"termid":"GO:0070334"}


id: PBO:0072887
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SH3 domain binding kinase family member 2","termid":"PBO:0072887"}


id: PBO:0090896
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Spg1-binding protein Etd1","termid":"PBO:0090896"}


id: PBO:0091815
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DUF Eight-Six-Six","termid":"PBO:0091815"}


id: GO:1903173
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving fatty alcohol.","definition_xrefs":["GO_REF:0000068","GOC:mengo_curators","PMID:24036493","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alcohol metabolic process","termid":"GO:0006066"},{"relation_name":"is_a","term_name":"fatty acid derivative metabolic process","termid":"GO:1901568"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006629","GO:0044281","GO:0008150"],"is_obsolete":false,"name":"fatty alcohol metabolic process","synonyms":[{"name":"fatty alcohol metabolism","type":"exact"}],"termid":"GO:1903173"}


id: PBO:0076403
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TATA-box binding protein associated factor 1 like","termid":"PBO:0076403"}


id: GO:0090148
data:
  {"annotated_genes":["SJAG_05261","SJAG_02848","SJAG_03464","SJAG_02384"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[96849,104424,104686],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0090149"},{"annotations":[101867],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0099050"}]},"cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the separation of a single continuous membrane into two membranes.","definition_xrefs":["GOC:dph","GOC:tb","GOC:ascb_2009"],"direct_ancestors":[{"relation_name":"is_a","term_name":"membrane organization","termid":"GO:0061024"}],"gene_count":4,"genes_by_uniquename":{"SJAG_02384":null,"SJAG_02848":null,"SJAG_03464":null,"SJAG_05261":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0061024"}],"interesting_parent_ids":["GO:0061024","GO:0008150"],"is_obsolete":false,"name":"membrane fission","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"membrane scission","type":"exact"}],"termid":"GO:0090148","terms_by_termid":{"GO:0090149":null,"GO:0099050":null}}


id: PBO:0061016
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleolar protein interacting with the FHA domain of MKI67","termid":"PBO:0061016"}


id: GO:0006486
data:
  {"annotated_genes":["SJAG_03790","SJAG_04401","SJAG_01491","SJAG_03333","SJAG_03082","SJAG_03311","SJAG_01389","SJAG_03871","SJAG_00394","SJAG_04363","SJAG_00183","SJAG_03656","SJAG_01021","SJAG_01276","SJAG_03150","SJAG_03032","SJAG_03555","SJAG_03056","SJAG_03188","SJAG_01264","SJAG_04571","SJAG_00831","SJAG_00598","SJAG_05348","SJAG_04316","SJAG_01595","SJAG_03676","SJAG_02648","SJAG_00437","SJAG_01006","SJAG_00816","SJAG_05219","SJAG_03764","SJAG_01069","SJAG_04952","SJAG_04127","SJAG_04728","SJAG_04090","SJAG_03774","SJAG_02102","SJAG_02903","SJAG_02056","SJAG_03149","SJAG_02163","SJAG_00554","SJAG_00924","SJAG_00334","SJAG_01972","SJAG_04053","SJAG_00747","SJAG_04821","SJAG_02996","SJAG_04906","SJAG_04095","SJAG_04770","SJAG_02783","SJAG_04954","SJAG_01950","SJAG_03330","SJAG_04231","SJAG_02519"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[58990,64119,64423,68140,70204,73835,76215,77211,97588,101935,110350,115953,119837],"is_not":false,"summary":null,"term":"GO:0006486"},{"annotations":[62341,78641,64339,106945,101897,79012,66863,92980,81832,95763,70732,101685,65432,113069,74896,76611],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0006488"},{"annotations":[81725,112688,71814,76462,77128,79806,76590,81011,77608,79314,75419,112682,81145,80146,78762],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006487"},{"annotations":[100674,59934,100673,78200,100676,71505,102237,100675,81353,120070,80688,89329,81063,76205],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0018279"},{"annotations":[76591,81146,112683,112689,63926,120071,79315],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006493"},{"annotations":[103459,107911,94897],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035269"}]},"cv_name":"biological_process","definition":"A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins.","definition_xrefs":["GOC:curators","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein modification process","termid":"GO:0036211"},{"relation_name":"is_a","term_name":"macromolecule glycosylation","termid":"GO:0043413"},{"relation_name":"part_of","term_name":"glycoprotein biosynthetic process","termid":"GO:0009101"}],"gene_count":61,"genes_by_uniquename":{"SJAG_00183":null,"SJAG_00334":null,"SJAG_00394":null,"SJAG_00437":null,"SJAG_00554":null,"SJAG_00598":null,"SJAG_00747":null,"SJAG_00816":null,"SJAG_00831":null,"SJAG_00924":null,"SJAG_01006":null,"SJAG_01021":null,"SJAG_01069":null,"SJAG_01264":null,"SJAG_01276":null,"SJAG_01389":null,"SJAG_01491":null,"SJAG_01595":null,"SJAG_01950":null,"SJAG_01972":null,"SJAG_02056":null,"SJAG_02102":null,"SJAG_02163":null,"SJAG_02519":null,"SJAG_02648":null,"SJAG_02783":null,"SJAG_02903":null,"SJAG_02996":null,"SJAG_03032":null,"SJAG_03056":null,"SJAG_03082":null,"SJAG_03149":null,"SJAG_03150":null,"SJAG_03188":null,"SJAG_03311":null,"SJAG_03330":null,"SJAG_03333":null,"SJAG_03555":null,"SJAG_03656":null,"SJAG_03676":null,"SJAG_03764":null,"SJAG_03774":null,"SJAG_03790":null,"SJAG_03871":null,"SJAG_04053":null,"SJAG_04090":null,"SJAG_04095":null,"SJAG_04127":null,"SJAG_04231":null,"SJAG_04316":null,"SJAG_04363":null,"SJAG_04401":null,"SJAG_04571":null,"SJAG_04728":null,"SJAG_04770":null,"SJAG_04821":null,"SJAG_04906":null,"SJAG_04952":null,"SJAG_04954":null,"SJAG_05219":null,"SJAG_05348":null},"genotype_count":0,"in_subsets":["bp_goslim_japonicus"],"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"protein glycosylation","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"secondary_identifiers":["GO:0065006"],"synonyms":[{"name":"protein amino acid glycosylation","type":"exact"},{"name":"protein-carbohydrate complex assembly","type":"related"}],"termid":"GO:0006486","terms_by_termid":{"GO:0006486":null,"GO:0006487":null,"GO:0006488":null,"GO:0006493":null,"GO:0018279":null,"GO:0035269":null}}


id: MONDO:0859261
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"attention deficit-hyperactivity disorder","termid":"MONDO:0007743"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"attention deficit-hyperactivity disorder 8","secondary_identifiers":["MEDGEN:1808030","OMIM:619957","UMLS:C5677018"],"termid":"MONDO:0859261","xrefs":{"Monarch":{"xref_id":"0859261"}}}


id: GO:0150068
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of tubulin deacetylase activity.","definition_xrefs":["GOC:aruk","GOC:bc"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of tubulin deacetylase activity (obsolete GO:0150068)","termid":"GO:0150068"}


id: PBO:0038487
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ABCB10 pseudogene 3","termid":"PBO:0038487"}


id: PBO:0030811
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-unequal_meiotic_chromosome_segregation","termid":"PBO:0030811"}


id: PBO:0089463
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cell wall glucan beta-glucosidase Bgl2","termid":"PBO:0089463"}


id: MONDO:0010923
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"myopathy","termid":"MONDO:0005336"},{"relation_name":"is_a","term_name":"hereditary skeletal muscle disorder","termid":"MONDO:0700223"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005336"],"is_obsolete":false,"name":"proximal myopathy with focal depletion of mitochondria","secondary_identifiers":["MESH:C563453","Orphanet:521305","GARD:17956","UMLS:C1833453","OMIM:600706","MEDGEN:318881"],"synonyms":[{"name":"proximal myopathy with focal depletion of mitochondria","type":"exact"}],"termid":"MONDO:0010923","xrefs":{"Monarch":{"xref_id":"0010923"}}}


id: MONDO:0014640
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An amyotrophic lateral sclerosis that has material basis in mutation in the SQSTM1 gene on chromosome 5q35.","definition_xrefs":["DOID:0110068","PMID:22084127"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial amyotrophic lateral sclerosis","termid":"MONDO:0005144"},{"relation_name":"is_a","term_name":"behavioral variant of frontotemporal dementia","termid":"MONDO:0017160"},{"relation_name":"is_a","term_name":"frontotemporal dementia with motor neuron disease","termid":"MONDO:0017161"},{"relation_name":"is_a","term_name":"frontotemporal dementia and/or amyotrophic lateral sclerosis","termid":"MONDO:0030923"},{"relation_name":"is_a","term_name":"SQSTM1-related multisystem proteinopathy","termid":"MONDO:0800464"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0021179"},{"rel_name":"is_a","termid":"MONDO:0002039"}],"interesting_parent_ids":["MONDO:0002039","MONDO:0005066","MONDO:0005559","MONDO:0021179"],"is_obsolete":false,"name":"frontotemporal dementia and/or amyotrophic lateral sclerosis 3","secondary_identifiers":["OMIM:616437","MEDGEN:897127","UMLS:C4225326","GARD:16113"],"synonyms":[{"name":"FTDALS3","type":"exact"},{"name":"frontotemporal dementia and/or amyotrophic lateral sclerosis 3","type":"exact"},{"name":"frontotemporal dementia and/or amyotrophic lateral sclerosis type 3","type":"exact"}],"termid":"MONDO:0014640","xrefs":{"Monarch":{"xref_id":"0014640"}}}


id: MOD:00008
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"Entry from Unimod representing one or more entries in RESID. OBSOLETE because organizational use is no longer required.","definition_xrefs":["PubMed:18688235"],"gene_count":0,"genotype_count":0,"name":"OBSOLETE MOD:00008 common (obsolete MOD:00008)","termid":"MOD:00008"}


id: PBO:0043719
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome c oxidase subunit 6B1 pseudogene 7","termid":"PBO:0043719"}


id: PBO:0017742
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pyruvate kinase","termid":"PBO:0017742"}


id: GO:0150016
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Any dendrite in a dendritic tree that emerges near the basal pole of a neuron (e.g. in bipolar neurons, basal dendrites are either on the same side of the soma as the axon, or project toward the axon), and which is farthest away from the neuronal cell body (the soma).","definition_xrefs":["PMID:20629984","PMID:22683681","PMID:9214543","PMID:17046728","PMID:1720142","GOC:aruk","GOC:bc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"basal dendrite","termid":"GO:0097441"},{"relation_name":"is_a","term_name":"distal dendrite","termid":"GO:0150002"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"basal distal dendrite","termid":"GO:0150016"}


id: MOD:00618
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative","definition_xrefs":["Unimod:299#W"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-tryptophan residue","termid":"MOD:00918"},{"relation_name":"is_a","term_name":"carboxylated residue","termid":"MOD:01152"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tryptophan carboxylation","synonyms":[{"name":"Carboxy","type":"related"},{"name":"Carboxylation","type":"related"}],"termid":"MOD:00618"}


id: PBO:0016956
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Schizosaccharomyces specific protein New9","termid":"PBO:0016956"}


id: PR:O13854
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- adg2 gene.","definition_xrefs":["UniProtKB:O13854","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"serine/threonine-rich protein adg2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC19G12.16c","synonyms":[{"name":"Spom972h-adg2","type":"exact"},{"name":"meiotically up-regulated gene 46 protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13854"}


id: PBO:0113029
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Catalytic subunit of DNA polymerase zeta (pol zeta); involved in translesion synthesis during post-replication repair; required for mutagenesis induced by DNA damage; involved in double-strand break repair; may be involved in meiosis; forms a complex with Rev7p, Pol31p and Pol32p","termid":"PBO:0113029"}


id: PBO:0085030
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Non-ATPase base subunit of the 19S RP of the 26S proteasome; may participate in the recognition of several ligands of the proteasome; contains a leucine-rich repeat (LRR) domain, a site for protein-protein interactions; RP is the acronym for regulatory particle","termid":"PBO:0085030"}


id: MONDO:0017561
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"congenital knee dislocation","termid":"MONDO:0017470"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital genu flexum","secondary_identifiers":["icd11.foundation:830907514","GARD:21226","MEDGEN:1842651","Orphanet:295232","UMLS:C5681090"],"termid":"MONDO:0017561","xrefs":{"Monarch":{"xref_id":"0017561"}}}


id: PBO:0074659
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, H/ACA box 48B","termid":"PBO:0074659"}


id: FYPO:0002173
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of one or more RNAs that are normally expressed during the meiotic cell cycle measured in a cell is higher than normal (i.e. higher than observed in wild-type cells during vegetative growth).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased RNA level during vegetative growth","termid":"FYPO:0000825"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0006551"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0006551"],"is_obsolete":false,"name":"increased level of meiotic gene mRNA during vegetative growth","synonyms":[{"name":"increased level of meiosis gene mRNA during vegetative growth","type":"exact"},{"name":"increased level of meiotic cell cycle gene mRNA during vegetative growth","type":"related"},{"name":"increased level of meiotic gene RNA during vegetative growth","type":"exact"},{"name":"increased level of meiotic gene mRNA during mitotic cell cycle","type":"related"},{"name":"increased level of meiotic gene transcripts during vegetative growth","type":"exact"},{"name":"increased level of meiotic nuclear division gene mRNA during vegetative growth","type":"exact"},{"name":"increased meiotic gene mRNA accumulation during vegetative growth","type":"related"},{"name":"untimely expression of gametogenic genes during mitotic growth","type":"exact"}],"termid":"FYPO:0002173"}


id: MONDO:0005106
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign, usually painless, well-circumscribed lipomatous tumor composed of adipose tissue.","definition_xrefs":["NCIT:C3192"],"direct_ancestors":[{"relation_name":"is_a","term_name":"benign lipomatous neoplasm","termid":"MONDO:0044983"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"lipoma","secondary_identifiers":["ICD9:214.9","MEDGEN:44173","EFO:0000759","ICD9:214","SCTID:254831005","DOID:3315","ICDO:8850/0","MESH:D008067","SCTID:93163002","UMLS:C0023798","icd11.foundation:1090000716"],"synonyms":[{"name":"benign lipomatous tumour","type":"related"},{"name":"benign tumor of adipose tissue","type":"exact"},{"name":"benign tumour of adipose tissue","type":"exact"},{"name":"lipoma","type":"exact"},{"name":"lipoma, benign","type":"exact"},{"name":"lipomatosis, familial multiple","type":"exact"},{"name":"lipomatous neoplasm","type":"related"},{"name":"lipomatous neoplasm (morphologic abnormality)","type":"exact"},{"name":"lipomatous tumor","type":"related"},{"name":"lipomatous tumour","type":"related"},{"name":"multiple lipomatosis","type":"narrow"},{"name":"tumour of adipose tissue","type":"related"}],"termid":"MONDO:0005106","xrefs":{"Monarch":{"xref_id":"0005106"}}}


id: GO:0016625
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces an iron-sulfur protein.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors","termid":"GO:0016903"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor","secondary_identifiers":["EC:1.2.7.-"],"synonyms":[{"name":"oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulphur protein as acceptor","type":"exact"}],"termid":"GO:0016625"}


id: MONDO:0004305
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A parathyroid gland adenoma composed predominantly or entirely of neoplastic cells with abundant granular eosinophilic cytoplasm.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oncocytic adenoma","termid":"MONDO:0003424"},{"relation_name":"is_a","term_name":"parathyroid gland adenoma","termid":"MONDO:0006890"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"parathyroid oncocytic adenoma","secondary_identifiers":["MEDGEN:233845","UMLS:C1335351","DOID:7611","NCIT:C27393"],"synonyms":[{"name":"parathyroid gland oncocytic adenoma","type":"exact"},{"name":"parathyroid oncocytic adenoma","type":"exact"}],"termid":"MONDO:0004305","xrefs":{"Monarch":{"xref_id":"0004305"}}}


id: GO:0080123
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: a jasmonate + an L-alpha-amino acid + ATP = a jasmonyl-L-amino acid + AMP + diphosphate + H+. In Arabidopsis, isoleucine is the principal amino acid that conjugates with JA to form JA (JA-Ile). Other amino acid can be conjugated with JA such as valine, leucine, and phenylalanine.","definition_xrefs":["PMID:17291501","RHEA:55772","PMID:33821356","PMID:15258265"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-amino acid ligase activity","termid":"GO:0016881"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016874"],"is_obsolete":false,"name":"jasmonoyl-L-amino acid ligase activity","secondary_identifiers":["EC:6.3.2.52"],"synonyms":[{"name":"ja-amino synthetase activity","type":"exact"},{"name":"jasmonate-amido synthetase activity","type":"exact"},{"name":"jasmonate-amino acid conjugate synthetase activity","type":"exact"},{"name":"jasmonate-amino acid synthetase activity","type":"exact"},{"name":"jasmonate-amino synthetase activity","type":"exact"},{"name":"jasmonate:amino acid synthetase activity","type":"exact"},{"name":"jasmonic acid-amino synthetase activity","type":"exact"},{"name":"jasmonyl-amino synthetase activity","type":"exact"}],"termid":"GO:0080123"}


id: PBO:0067053
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 74, pseudogene","termid":"PBO:0067053"}


id: PR:O13961
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cut11 gene.","definition_xrefs":["UniProtKB:O13961","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear envelope protein ndc1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1786.03","synonyms":[{"name":"Spom972h-cut11","type":"exact"},{"name":"cell untimely torn protein 11 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13961"}


id: PBO:0043065
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cholinergic receptor muscarinic 1","termid":"PBO:0043065"}


id: GO:0048651
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which individuals that have the potential to develop any of several possible distinct developmental paths have their individual developmental fates determined in response to environmental cues.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to external stimulus","termid":"GO:0009605"},{"relation_name":"is_a","term_name":"polyphenic determination","termid":"GO:0048647"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"polyphenic determination, influence by environmental factors","termid":"GO:0048651"}


id: PATO:0001826
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A wetness quality that is relatively low.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"wet","termid":"PATO:0001823"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased wetness","synonyms":[{"name":"low wetness","type":"exact"}],"termid":"PATO:0001826"}


id: FYPO:0006944
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount on one or more ribosomal proteins measured in a cell is lower than normal.","definition_xrefs":["PMID:30862564","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein level during vegetative growth","termid":"FYPO:0001324"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0006551"],"is_obsolete":false,"name":"decreased ribosomal protein level","synonyms":[{"name":"decreased cellular ribosomal protein level","type":"exact"},{"name":"decreased ribosomal protein level during mitotic cell cycle","type":"related"},{"name":"decreased ribosomal protein level during vegetative growth","type":"exact"},{"name":"reduced ribosomal protein level","type":"exact"}],"termid":"FYPO:0006944"}


id: GO:0004106
data:
  {"annotated_genes":["SJAG_00518"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[76748],"is_not":false,"summary":null,"term":"GO:0004106"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: chorismate = prephenate.","definition_xrefs":["EC:5.4.99.5","RHEA:13897"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular transferase activity","termid":"GO:0016866"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00518":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016853"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016853"],"is_obsolete":false,"name":"chorismate mutase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:CHORISMATEMUT-RXN","KEGG_REACTION:R01715"],"synonyms":[{"name":"chorismate pyruvatemutase activity","type":"related"},{"name":"hydroxyphenylpyruvate synthase activity","type":"broad"}],"termid":"GO:0004106","terms_by_termid":{"GO:0004106":null}}


id: MONDO:0004323
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The loss of muscle tissue due to inactivity or disease.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myopathy","termid":"MONDO:0005336"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005336"],"is_obsolete":false,"name":"muscular atrophy","secondary_identifiers":["ICD9:728.2","DOID:767","MESH:D009133","MEDGEN:892680","SCTID:88092000","UMLS:C0541794"],"synonyms":[{"name":"amyotrophia","type":"exact"},{"name":"muscle wasting","type":"exact"},{"name":"wasting - muscle","type":"exact"}],"termid":"MONDO:0004323","xrefs":{"Monarch":{"xref_id":"0004323"}}}


id: PBO:0069610
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 887, pseudogene","termid":"PBO:0069610"}


id: GO:0036038
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that is located at the ciliary transition zone and consists of several proteins some of which are membrane bound. Acts as an organiser of transition zone inner structure, specifically the Y-shaped links, in conjunction with the NPHP complex. The MKS complex also acts as part of the selective barrier that prevents diffusion of proteins between the ciliary cytoplasm and cellular cytoplasm as well as between the ciliary membrane and plasma membrane.","definition_xrefs":["PMID:21725307","PMID:21565611","PMID:26595381","PMID:21422230","PMID:26982032","GOC:cilia","PMID:22179047","GOC:sp","PMID:25869670"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"ciliary transition zone","termid":"GO:0035869"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"MKS complex","synonyms":[{"name":"B9 complex","type":"narrow"},{"name":"MKS module","type":"exact"},{"name":"TCTN-B9D complex","type":"broad"},{"name":"tectonic complex","type":"narrow"},{"name":"tectonic-like complex","type":"narrow"}],"termid":"GO:0036038"}


id: GO:0015796
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of galactitol across a membrane. Galactitol is the hexitol derived by the reduction of the aldehyde group of either D- or L-galactose.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyol transmembrane transport","termid":"GO:0015791"},{"relation_name":"is_a","term_name":"carbohydrate transmembrane transport","termid":"GO:0034219"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0055085","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"galactitol transmembrane transport","synonyms":[{"name":"galactitol transport","type":"broad"}],"termid":"GO:0015796"}


id: PBO:0089288
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved eukaryotic protein, R3H domain-containing","termid":"PBO:0089288"}


id: PBO:0082845
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Copper-binding metallothionein; required for wild-type copper resistance","termid":"PBO:0082845"}


id: GO:1902047
data:
  {"annotated_genes":["SJAG_04134","SJAG_02125","SJAG_04469","SJAG_02059","SJAG_03817","SJAG_02344","SJAG_02060"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[104522],"is_not":false,"summary":null,"term":"GO:1902047"},{"annotations":[108341],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:1902267"},{"annotations":[57969,62358,70468,70565,62382],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903711"},{"annotations":[62357,70467,70564,62381],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903710"}]},"cv_name":"biological_process","definition":"The process in which a polyamine macromolecule is transported across a membrane.","definition_xrefs":["GOC:vw","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyamine transport","termid":"GO:0015846"},{"relation_name":"is_a","term_name":"transmembrane transport","termid":"GO:0055085"}],"gene_count":7,"genes_by_uniquename":{"SJAG_02059":null,"SJAG_02060":null,"SJAG_02125":null,"SJAG_02344":null,"SJAG_03817":null,"SJAG_04134":null,"SJAG_04469":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0055085","GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"polyamine transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null,"GO_REF:0000108":null,"GO_REF:0000117":null},"secondary_identifiers":["GO:1905122"],"synonyms":[{"name":"polyamine import","type":"related"},{"name":"polyamine uptake","type":"related"}],"termid":"GO:1902047","terms_by_termid":{"GO:1902047":null,"GO:1902267":null,"GO:1903710":null,"GO:1903711":null}}


id: PBO:0039901
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Rho guanine nucleotide exchange factor 4","termid":"PBO:0039901"}


id: MOD:01215
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-aspartic acid residue to O4-(carboxamidomethyl)aspartate.","definition_xrefs":["Unimod:4#D","PubMed:11510821","PubMed:16526082","OMSSA:29","PubMed:12422359"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iodoacetamide derivatized residue","termid":"MOD:00397"},{"relation_name":"is_a","term_name":"modified L-aspartic acid residue","termid":"MOD:00904"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iodoacetamide derivatized aspartic acid","synonyms":[{"name":"Carbamidomethyl","type":"related"},{"name":"Iodoacetamide derivative","type":"related"},{"name":"carbamidomethyld","type":"exact"}],"termid":"MOD:01215"}


id: MONDO:0008919
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Systemic primary carnitine deficiency (SPCD) is a potentially lethal disorder of fatty acid oxidation characterized classically by early childhood onset cardiomyopathy often with weakness and hypotonia, failure to thrive and recurrent hypoglycemic hypoketotic seizures and/or coma.","definition_xrefs":["Orphanet:158"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inborn disorder of amino acid metabolism","termid":"MONDO:0004736"},{"relation_name":"is_a","term_name":"disorder of fatty acid oxidation and ketogenesis","termid":"MONDO:0017713"},{"relation_name":"is_a","term_name":"disorder of carnitine cycle and carnitine transport","termid":"MONDO:0017716"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002525"}],"interesting_parent_ids":["MONDO:0004736","MONDO:0005066","MONDO:0002525"],"is_obsolete":false,"name":"systemic primary carnitine deficiency disease","secondary_identifiers":["NCIT:C98864","ICD9:277.81","DOID:14365","ICD9:277.82","MEDGEN:90999","GARD:5104","MESH:C536778","OMIM:212140","UMLS:C0342788","NANDO:1200973","NANDO:2200508","SCTID:21764004"],"synonyms":[{"name":"CARNITINE deficiency, systemic primary","type":"related"},{"name":"CDSP","type":"exact"},{"name":"CUD","type":"exact"},{"name":"Carnitine deficiency","type":"exact"},{"name":"Carnitine deficiency, primary","type":"related"},{"name":"Carnitine deficiency, systemic, due to defect in renal reabsorption of Carnitine","type":"related"},{"name":"Carnitine deficiency, systemic, due to defect in renal reabsorption of carnitine","type":"related"},{"name":"Carnitine plasma-membrane transporter deficiency","type":"related"},{"name":"Carnitine transporter defect","type":"exact"},{"name":"Carnitine transporter, plasma-Membrane, deficiency of","type":"related"},{"name":"Carnitine uptake defect","type":"related"},{"name":"Carnitine uptake deficiency","type":"exact"},{"name":"SPCD","type":"exact"},{"name":"carnitine transporter deficiency","type":"exact"},{"name":"carnitine uptake defect","type":"exact"},{"name":"cud","type":"exact"},{"name":"deficiency of plasma-membrane carnitine transporter","type":"exact"},{"name":"primary carnitine deficiency","type":"exact"},{"name":"renal carnitine transport defect","type":"exact"},{"name":"systemic Carnitine deficiency","type":"related"},{"name":"systemic primary carnitine deficiency","type":"related"},{"name":"systemic primary carnitine deficiency disease","type":"exact"}],"termid":"MONDO:0008919","xrefs":{"Monarch":{"xref_id":"0008919"}}}


id: MOD:00043
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-cysteine residue to S-phospho-L-cysteine.","definition_xrefs":["RESID:AA0034","PubMed:3142516","PubMed:7961745","PubMed:8128219","Unimod:21#C"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphorylated residue","termid":"MOD:00696"},{"relation_name":"is_a","term_name":"residues isobaric at 182.96-182.98 Da","termid":"MOD:00777"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00696"},{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00696","MOD:00905"],"is_obsolete":false,"name":"S-phospho-L-cysteine","synonyms":[{"name":"(2R)-2-amino-3-(phosphonosulfanyl)propanoic acid","type":"exact"},{"name":"2-azanyl-3-(phosphonosulfanyl)propanoic acid","type":"exact"},{"name":"ACT_SITE Phosphocysteine intermediate","type":"exact"},{"name":"MOD_RES Phosphocysteine","type":"exact"},{"name":"PCys","type":"exact"},{"name":"Phospho","type":"related"},{"name":"Phosphorylation","type":"related"},{"name":"S-phospho-L-cysteine","type":"exact"},{"name":"S-phosphonocysteine","type":"exact"},{"name":"S-phosphorylated L-cysteine","type":"exact"},{"name":"S3-phosphocysteine","type":"exact"},{"name":"cysteine phosphate thioester","type":"exact"}],"termid":"MOD:00043"}


id: PBO:0081258
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 28","termid":"PBO:0081258"}


id: FYPO:0000722
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to acidic pH. Cells stop growing (and may die) at a pH that allows wild type cells to grow.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sensitive to stress during vegetative growth","termid":"FYPO:0000304"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000003","FYPO:0005447","FYPO:0001985","FYPO:0000139"],"is_obsolete":false,"name":"sensitive to acidity","synonyms":[{"name":"acid pH resistance: decreased","type":"related"},{"name":"decreased growth during cellular response to acidity","type":"exact"},{"name":"decreased growth on acidic medium","type":"related"},{"name":"decreased vegetative cell population growth during cellular response to acidity","type":"exact"},{"name":"hypersensitive to acidity","type":"exact"},{"name":"sensitive to acidity during mitotic cell cycle","type":"related"},{"name":"sensitive to acidity during vegetative growth","type":"exact"}],"termid":"FYPO:0000722"}


id: PBO:0091570
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dynein Light Intermediate chain","termid":"PBO:0091570"}


id: MONDO:0010560
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"X-linked cleft palate and ankyloglossia is a rare, genetic developmental defect during embryogenesis syndrome characterized by the association of complete, partial or submucous cleft palate and ankyloglossia. Patients may also present abnormal uvula (e.g. absent, bifid, shortened or laterally deviated), short lingual frenulum and dental anomalies (e.g. buccal crossbite, absent and/or misshapen teeth). Digital abnormalities, such as mild clinodactyly and/or syndactyly, have also been reported.","definition_xrefs":["Orphanet:324601"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cleft palate","termid":"MONDO:0016064"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cleft palate with or without ankyloglossia, X-linked","secondary_identifiers":["SCTID:766761000","DOID:0060613","UMLS:C1844830","GARD:1394","MEDGEN:375520","MESH:C536426","OMIM:303400"],"synonyms":[{"name":"CPX","type":"related"},{"name":"X-linked cleft palate","type":"related"},{"name":"X-linked cleft palate and ankyloglossia","type":"exact"},{"name":"cleft palate X-linked","type":"related"},{"name":"cleft palate with ankyloglossia","type":"exact"},{"name":"cleft palate with or without ankyloglossia, X-linked","type":"exact"},{"name":"cleft palate, X-linked","type":"related"}],"termid":"MONDO:0010560","xrefs":{"Monarch":{"xref_id":"0010560"}}}


id: MONDO:0007126
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any spondyloarthropathy, susceptibility to in which the cause of the disease is a mutation in the HLA-B gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spondyloarthropathy, susceptibility to","termid":"MONDO:0024512"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spondyloarthropathy, susceptibility to, 1","secondary_identifiers":["MEDGEN:400145","OMIM:106300","UMLS:C1862852","DOID:0080603"],"synonyms":[{"name":"Bechterew syndrome","type":"related"},{"name":"HLA-B spondyloarthropathy, susceptibility to","type":"exact"},{"name":"Marie-Strumpell spondylitis","type":"related"},{"name":"SPDA1","type":"related"},{"name":"ankylosing spondylitis, susceptibility to","type":"related"},{"name":"spondyloarthropathy, susceptibility to caused by mutation in HLA-B","type":"exact"},{"name":"spondyloarthropathy, susceptibility to, 1","type":"exact"},{"name":"spondyloarthropathy, susceptibility to, type 1","type":"exact"},{"name":"susceptibility to spondyloarthropathy 1","type":"related"}],"termid":"MONDO:0007126","xrefs":{"Monarch":{"xref_id":"0007126"}}}


id: PBO:0068301
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ring finger protein 6 pseudogene 1","termid":"PBO:0068301"}


id: MONDO:0016208
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Solitary rectal ulcer syndrome (SRUS) is a rare rectal disease characterized by rectal bleeding, abdominal pain, passage of mucus, sensation of incomplete evacuation, straining at defecation and rectal prolapsed, secondary to ischemic changes in the rectum.","definition_xrefs":["Orphanet:209964"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intestinal disorder","termid":"MONDO:0005020"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"solitary rectal ulcer syndrome","secondary_identifiers":["icd11.foundation:1677843970","ICD10CM:K62.6","MEDGEN:906337","SCTID:716685003","UMLS:C4274343","GARD:20444"],"termid":"MONDO:0016208","xrefs":{"Monarch":{"xref_id":"0016208"}}}


id: PBO:0089880
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"splicing factor Spf30","termid":"PBO:0089880"}


id: GO:0009386
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Translational attenuation is a regulatory mechanism analogous to ribosome-mediated transcriptional attenuation. The system requires the presence of a short ORF, called a leader peptide, encoded in the mRNA upstream of the ribosome-binding site and start codon of the gene whose translation is to be regulated. Certain conditions, such as presence of the antibiotic tetracycline in bacteria or amino acid starvation, may cause slowing or stalling of the ribosome translating the leader peptide. The stalled ribosome masks a region of the mRNA and affects which of two alternative mRNA folded structures will form, therefore controlling whether or not a ribosome will bind and initiate translation of the downstream gene. Translational attenuation is analogous to ribosome-mediated transcriptional attenuation, in which mRNA remodeling caused by ribosome stalling regulates transcriptional termination rather than translational initiation.","definition_xrefs":["PMID:15694341","PMID:15805513"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of translation","termid":"GO:0006417"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"translational attenuation","termid":"GO:0009386"}


id: PBO:0111339
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleophismin-like histone chaperone/CENP-A amino terminus domain (NTD) isomerase Ani2/Fkbp40","termid":"PBO:0111339"}


id: GO:0034982
data:
  {"annotated_genes":["SJAG_03648","SJAG_04641","SJAG_01004","SJAG_02397","SJAG_03121","SJAG_01179","SJAG_03910","SJAG_04533","SJAG_02809","SJAG_01838","SJAG_04514","SJAG_01430","SJAG_01896"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[77658,79093,80013,90078,102954,104998,115403],"is_not":false,"summary":null,"term":"GO:0034982"},{"annotations":[81780,104123,82165,78622,71596,79987],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006627"}]},"cv_name":"biological_process","definition":"The peptide cleavage of mitochondrial proteins, including cleavage contributing to their import.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein processing","termid":"GO:0016485"}],"gene_count":13,"genes_by_uniquename":{"SJAG_01004":null,"SJAG_01179":null,"SJAG_01430":null,"SJAG_01838":null,"SJAG_01896":null,"SJAG_02397":null,"SJAG_02809":null,"SJAG_03121":null,"SJAG_03648":null,"SJAG_03910":null,"SJAG_04514":null,"SJAG_04533":null,"SJAG_04641":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051604"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0051604"],"is_obsolete":false,"name":"mitochondrial protein processing","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"mitochondrial protein modification","type":"related"}],"termid":"GO:0034982","terms_by_termid":{"GO:0006627":null,"GO:0034982":null}}


id: GO:1905302
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of macropinocytosis.","definition_xrefs":["GOC:TermGenie","GOC:pad","PMID:18691641","GOC:PARL","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of pinocytosis","termid":"GO:0048550"},{"relation_name":"is_a","term_name":"regulation of macropinocytosis","termid":"GO:1905301"},{"relation_name":"negatively_regulates","term_name":"macropinocytosis","termid":"GO:0044351"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0016192"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0016192"},{"rel_name":"negatively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0006810","GO:0016192","GO:0008150"],"is_obsolete":false,"name":"negative regulation of macropinocytosis","synonyms":[{"name":"down regulation of macropinocytosis","type":"exact"},{"name":"down-regulation of macropinocytosis","type":"exact"},{"name":"downregulation of macropinocytosis","type":"exact"},{"name":"inhibition of macropinocytosis","type":"narrow"}],"termid":"GO:1905302"}


id: PBO:0072674
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RTRAF pseudogene 1","termid":"PBO:0072674"}


id: MONDO:0006776
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete hairy cell leukemia (obsolete MONDO:0006776)","termid":"MONDO:0006776","xrefs":{"Monarch":{"xref_id":"0006776"}}}


id: PBO:0049223
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GRK5 intronic transcript 1","termid":"PBO:0049223"}


id: PBO:0071434
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L31 pseudogene 40","termid":"PBO:0071434"}


id: PBO:0002536
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tethering factor for nuclear proteasome Cut8","termid":"PBO:0002536"}


id: GO:0018883
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving caprolactam, hexahydro-2h-azepin-2-one, a cyclic amide of caproic acid used in manufacture of synthetic fibers of the polyamide type. It can cause local irritation.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xenobiotic metabolic process","termid":"GO:0006805"},{"relation_name":"is_a","term_name":"lactam metabolic process","termid":"GO:0072338"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150"],"is_obsolete":false,"name":"caprolactam metabolic process","secondary_identifiers":["UM-BBD_pathwayID:cap"],"synonyms":[{"name":"caprolactam metabolism","type":"exact"}],"termid":"GO:0018883"}


id: GO:0045795
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases cell volume.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell volume homeostasis","termid":"GO:0006884"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of cell volume","termid":"GO:0045795"}


id: MONDO:0002908
data:
  {"annotated_genes":["SJAG_04206","SJAG_02013","SJAG_00214","SJAG_02426","SJAG_02012","SJAG_02000","SJAG_03266","SJAG_04192","SJAG_04334","SJAG_04495","SJAG_00464","SJAG_00092","SJAG_04394","SJAG_03247"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[89176,89175],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014488"},{"annotations":[88326,88327],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011236"},{"annotations":[88655],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0011717"},{"annotations":[89099],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014674"},{"annotations":[86979,86978],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007453"},{"annotations":[88247,88246],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0100165"},{"annotations":[87600],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009949"},{"annotations":[87627],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014221"},{"annotations":[86976,86973,89101,89102,86977,86974,89103,86975],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0005148"}]},"cv_name":"mondo","definition":"A metabolic disorder characterized by abnormal blood glucose levels.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic disease","termid":"MONDO:0005066"}],"gene_count":14,"genes_by_uniquename":{"SJAG_00092":null,"SJAG_00214":null,"SJAG_00464":null,"SJAG_02000":null,"SJAG_02012":null,"SJAG_02013":null,"SJAG_02426":null,"SJAG_03247":null,"SJAG_03266":null,"SJAG_04192":null,"SJAG_04206":null,"SJAG_04334":null,"SJAG_04394":null,"SJAG_04495":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"glucose metabolism disease","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C1257958","MESH:D044882","ICD9:271.8","EFO:0009406","DOID:4194","NCIT:C53655","SCTID:126877002","MEDGEN:226229"],"synonyms":[{"name":"disorder of glucose metabolism","type":"exact"},{"name":"glucose metabolism disorder","type":"exact"}],"termid":"MONDO:0002908","terms_by_termid":{"MONDO:0005148":null,"MONDO:0007453":null,"MONDO:0009949":null,"MONDO:0011236":null,"MONDO:0011717":null,"MONDO:0014221":null,"MONDO:0014488":null,"MONDO:0014674":null,"MONDO:0100165":null},"xrefs":{"Monarch":{"xref_id":"0002908"}}}


id: PR:P87314
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- hip1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P87314"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein hir1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC31F10.13c","synonyms":[{"name":"Spom972h-hip1","type":"exact"},{"name":"histone transcription regulator 1 homolog (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P87314"}


id: PBO:0044362
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CYCS pseudogene 51","termid":"PBO:0044362"}


id: PBO:0073388
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SET domain containing 4","termid":"PBO:0073388"}


id: MONDO:0014680
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A Mendelian susceptibility or predisposition to herpes simplex infection induced encephalitis in which the cause of the diseas is a mutation in the IRF3 gene.","definition_xrefs":["MONDO:patterns/susceptibility_by_gene"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"encephalopathy, acute, infection-induced","termid":"MONDO:0000166"},{"relation_name":"excluded_subClassOf","term_name":"herpes simplex encephalitis","termid":"MONDO:0012521"},{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"herpes simplex encephalitis, susceptibility to, 7","secondary_identifiers":["MEDGEN:901850","UMLS:C4225294","OMIM:616532"],"synonyms":[{"name":"Herpes simplex encephalitis, susceptibility to, 5","type":"related"},{"name":"Herpes simplex encephalitis, susceptibility to, type 7","type":"exact"},{"name":"IIAE7","type":"related"},{"name":"IRF3 herpes simplex encephalitis","type":"exact"},{"name":"encephalopathy, acute, infection-induced (HERPES-specific), susceptibility to, 7","type":"related"},{"name":"encephalopathy, acute, infection-induced (Herpes-specific), susceptibility to, 7","type":"related"},{"name":"encephalopathy, acute, infection-induced, susceptibility to, 7","type":"related"},{"name":"herpes simplex encephalitis caused by mutation in IRF3","type":"exact"},{"name":"herpes simplex encephalitis, susceptibility to, 7","type":"exact"}],"termid":"MONDO:0014680","xrefs":{"Monarch":{"xref_id":"0014680"}}}


id: GO:0021717
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A developmental process, independent of morphogenetic (shape) change, that is required for the inferior olivary nucleus to attain its fully functional state. The inferior olivary nucleus is a capsule-shaped structure in the ventral medulla located just lateral and dorsal to the medullary pyramids. Neurons in the inferior olivary nucleus are the source of climbing fiber input to the cerebellar cortex; these neurons have been implicated in various functions, such as learning and timing of movements.","definition_xrefs":["GO_REF:0000021","GOC:cls","GOC:dgh","GOC:dph","ISBN:0838580343","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure maturation","termid":"GO:0071695"},{"relation_name":"part_of","term_name":"medulla oblongata maturation","termid":"GO:0021582"},{"relation_name":"part_of","term_name":"inferior olivary nucleus development","termid":"GO:0021713"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"inferior olivary nucleus maturation","synonyms":[{"name":"inferior olive maturation","type":"related"}],"termid":"GO:0021717"}


id: PBO:0064001
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 35","termid":"PBO:0064001"}


id: PBO:0069305
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 561, pseudogene","termid":"PBO:0069305"}


id: FYPO:0005207
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular response phenotype observed in the vegetative growth phase of the life cycle in which the regulation of the mitotic cell cycle is normal (i.e. indistinguishable from wild type) when cells are shifted from one nitrogen source to another. Normally, cell division is delayed upon shifting from a poor to a rich nitrogen source, and accelerated upon shifting from a rich to a poor nitrogen source.","definition_xrefs":["PMID:689088","PMID:872891","PomBase:mah","PMID:21965528"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal regulation of mitotic cell cycle","termid":"FYPO:0001928"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000002","FYPO:0000257","FYPO:0001320"],"is_obsolete":false,"name":"normal mitotic cell cycle regulation upon nitrogen source shift","synonyms":[{"name":"normal cell cycle regulation upon nitrogen source shift","type":"exact"},{"name":"normal cell cycle regulation upon nitrogen source shift during mitotic cell cycle","type":"exact"},{"name":"normal mitotic cell cycle regulation during cellular response to nitrogen source shift","type":"exact"},{"name":"normal mitotic cell cycle regulation upon nitrogen source shift during vegetative growth","type":"exact"}],"termid":"FYPO:0005207"}


id: GO:0120525
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: choline = acetaldehyde + trimethylamine.","definition_xrefs":["RHEA:35095"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-nitrogen lyase activity","termid":"GO:0016840"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016829","GO:0003674"],"is_obsolete":false,"name":"choline trimethylamine lyase activity","secondary_identifiers":["MetaCyc:RXN-13946","EC:4.3.99.4","KEGG_REACTION:R10285"],"termid":"GO:0120525"}


id: PBO:0091111
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"APC amino acid transmembrane transporter","termid":"PBO:0091111"}


id: PBO:0081746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 676","termid":"PBO:0081746"}


id: GO:0090175
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of the establishment of planar polarity, the coordinated organization of groups of cells in a tissue, such that they all orient to similar coordinates.","definition_xrefs":["GOC:dph","GOC:ascb_2009","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of animal organ morphogenesis","termid":"GO:2000027"},{"relation_name":"regulates","term_name":"establishment of planar polarity","termid":"GO:0001736"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of establishment of planar polarity","termid":"GO:0090175"}


id: MONDO:0010357
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete MRX78 (obsolete MONDO:0010357)","secondary_identifiers":["OMIM:300551"],"termid":"MONDO:0010357","xrefs":{"Monarch":{"xref_id":"0010357"}}}


id: PR:O14137
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC3C7.13c gene.","definition_xrefs":["UniProtKB:O14137","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glucose-6-phosphate 1-dehydrogenase C7.13c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC3C7.13c","synonyms":[{"name":"G6PD (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-SPAC3C7.13c","type":"exact"}],"termid":"PR:O14137"}


id: GO:0003408
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process pertaining to the initial formation of the optic cup, a two-walled vesicle formed from the optic vesicle.","definition_xrefs":["GOC:dph","GOC:ascb_2009","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"optic cup morphogenesis involved in camera-type eye development","termid":"GO:0002072"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"optic cup formation involved in camera-type eye development","termid":"GO:0003408"}


id: PBO:0030157
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_vegetative_cell,_abnormal_cell_shape,_normal_cell_size","termid":"PBO:0030157"}


id: PBO:0040368
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP synthase peripheral stalk-membrane subunit b pseudogene 5","termid":"PBO:0040368"}


id: MONDO:0006212
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A type of hyperplasia that is characterized by a marked thickening of the urinary tract epithelium. There is no evidence of cytologic atypia. -- 2003","definition_xrefs":["NCIT:C27878"],"direct_ancestors":[{"relation_name":"is_a","term_name":"urothelial hyperplasia","termid":"MONDO:0024483"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"flat urothelial hyperplasia","secondary_identifiers":["MEDGEN:272633","EFO:1000259","UMLS:C1333621"],"synonyms":[{"name":"flat urothelial hyperplasia","type":"exact"}],"termid":"MONDO:0006212","xrefs":{"Monarch":{"xref_id":"0006212"}}}


id: SO:0000521
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one V-gene and one VDJ-gene.","direct_ancestors":[{"relation_name":"has_part","term_name":"V_gene_segment","termid":"SO:0000466"},{"relation_name":"has_part","term_name":"VDJ_gene_segment","termid":"SO:0000574"},{"relation_name":"is_a","term_name":"vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster","termid":"SO:0000938"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V_VDJ_cluster","synonyms":[{"name":"V VDJ cluster","type":"exact"},{"name":"V-(VDJ)-CLUSTER","type":"exact"}],"termid":"SO:0000521"}


id: MONDO:0021021
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"craniometaphyseal dysplasia","termid":"MONDO:0015465"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"craniodiaphyseal dysplasia, autosomal dominant","secondary_identifiers":["UMLS:C2675746","DOID:0080807","GARD:249","OMIM:122860","MEDGEN:382678","MESH:C567275"],"synonyms":[{"name":"CDD","type":"exact"},{"name":"Schaefer Stein Oshman syndrome","type":"related"},{"name":"craniodiaphyseal dysplasia, autosomal dominant","type":"exact"},{"name":"craniodiaphyseal dysplasia, dominant","type":"related"},{"name":"dominantly inherited craniodiaphyseal dysplasia","type":"related"}],"termid":"MONDO:0021021","xrefs":{"Monarch":{"xref_id":"0021021"}}}


id: MONDO:0100603
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any neurodevelopmental disorder, frequently presenting with lymphatic dysplasia, craniofacial and limb anomalies, and secondary lymphopenia from altered immune cell trafficking, in which the cause of the disease is a variation in the FAT4 gene.","direct_ancestors":[{"relation_name":"is_a","term_name":"Mendelian neurodevelopmental disorder","termid":"MONDO:0100500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0700092"}],"interesting_parent_ids":["MONDO:0700092"],"is_obsolete":false,"name":"FAT4-related neurodevelopmental disorder","termid":"MONDO:0100603","xrefs":{"Monarch":{"xref_id":"0100603"}}}


id: PBO:0083178
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Dubious open reading frame; unlikely to encode a functional protein, based on available experimental and comparative sequence data; completely overlaps the characterized snoRNA gene snR73","termid":"PBO:0083178"}


id: GO:1901945
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of miltiradiene.","definition_xrefs":["GOC:TermGenie","PMID:22027823"],"direct_ancestors":[{"relation_name":"is_a","term_name":"terpene catabolic process","termid":"GO:0046247"},{"relation_name":"is_a","term_name":"miltiradiene metabolic process","termid":"GO:1901944"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"miltiradiene catabolic process","synonyms":[{"name":"miltiradiene breakdown","type":"exact"},{"name":"miltiradiene catabolism","type":"exact"},{"name":"miltiradiene degradation","type":"exact"}],"termid":"GO:1901945"}


id: FYPO:0007972
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A microtubule cytoskeleton organization phenotype observed during mitotic anaphase B in which interpolar microtubule polymerization, i.e. the addition of tubulin dimers to the plus end of a microtubule occurs at a lower rate, or speed, than normal.","definition_xrefs":["PomBase:mlr","PMID:35293864"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased rate of microtubule polymerization during vegetative growth","termid":"FYPO:0005703"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000054"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000054","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"decreased rate of interpolar microtubule polymerization during mitotic anaphase B","termid":"FYPO:0007972"}


id: PBO:0046949
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 74 member A3","termid":"PBO:0046949"}


id: GO:0048014
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by an angiopoietin binding to the Tie receptor, and ending with the regulation of a downstream cellular process, e.g. transcription.","definition_xrefs":["GOC:signaling","PMID:11283723","GOC:ceb","PMID:11566266"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell surface receptor protein tyrosine kinase signaling pathway","termid":"GO:0007169"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"Tie signaling pathway","synonyms":[{"name":"Tek receptor signaling","type":"exact"},{"name":"Tie receptor signaling pathway","type":"exact"},{"name":"Tie receptor signalling pathway","type":"exact"},{"name":"angiopoietin-Tie signaling pathway","type":"narrow"},{"name":"angiopoietin/Tie signaling pathway","type":"narrow"}],"termid":"GO:0048014"}


id: FYPO:0004549
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell cycle checkpoint phenotype in which the S-phase DNA damage checkpoint (also known as the intra-S phase DNA damage checkpoint) is normal (i.e. indistinguishable from wild type) when the cell is exposed to ultraviolet light. The S phase DNA damage checkpoint slows progression through S phase in response to DNA damage.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal mitotic DNA damage checkpoint during cellular response to UV","termid":"FYPO:0002102"},{"relation_name":"is_a","term_name":"normal S-phase DNA damage checkpoint","termid":"FYPO:0003530"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000298"}],"interesting_parent_ids":["FYPO:0000298","FYPO:0000002","FYPO:0001320","FYPO:0001312","FYPO:0000631","FYPO:0000257"],"is_obsolete":false,"name":"normal S-phase DNA damage checkpoint during cellular response to UV","synonyms":[{"name":"normal S-phase DNA damage checkpoint activation during cellular response to UV","type":"exact"},{"name":"normal S-phase DNA damage checkpoint during cellular response to UV during mitotic cell cycle","type":"exact"},{"name":"normal S-phase DNA damage checkpoint during cellular response to UV during vegetative growth","type":"exact"},{"name":"normal S-phase DNA damage checkpoint during cellular response to ultraviolet light","type":"exact"},{"name":"normal intra-S phase DNA damage checkpoint during cellular response to UV","type":"exact"},{"name":"normal mitotic S-phase DNA damage checkpoint during cellular response to UV","type":"exact"}],"termid":"FYPO:0004549"}


id: PBO:0043659
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coenzyme Q4","termid":"PBO:0043659"}


id: PBO:0079102
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TSBP1 and BTNL2 antisense RNA 1","termid":"PBO:0079102"}


id: FYPO:0002279
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which a spore germinates to produce an elongated germ tube that is curved along the long axis, and undergoes a single round of cell division.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable after spore germination, single cell division, with elongated germ tube","termid":"FYPO:0002409"},{"relation_name":"is_a","term_name":"inviable curved elongated vegetative cell","termid":"FYPO:0002411"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000005"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000005","FYPO:0001320","FYPO:0000004","FYPO:0001985"],"is_obsolete":false,"name":"inviable after spore germination, single cell division, with elongated, curved germ tube","synonyms":[{"name":"inviable after spore germination, single cell division, elongated, curved cell","type":"exact"},{"name":"inviable following spore germination, single cell division, with elongated, curved germ tube","type":"exact"},{"name":"inviable germinated spore, single cell division, with elongated, curved germ tube","type":"exact"},{"name":"lethal after spore germination, single cell division, with elongated, curved germ tube","type":"exact"}],"termid":"FYPO:0002279"}


id: PBO:0062754
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 52 subfamily M member 1","termid":"PBO:0062754"}


id: GO:0021865
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The mitotic division of a radial glial cell giving rise to two new radial glial cells in the forebrain.","definition_xrefs":["GOC:dph","GOC:jid","PMID:16226447","GO_REF:0000021","GOC:cls","GOC:dgh"],"gene_count":0,"genotype_count":0,"name":"obsolete symmetric radial glial cell division in forebrain (obsolete GO:0021865)","termid":"GO:0021865"}


id: MONDO:0019397
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"leukodystrophy","termid":"MONDO:0019046"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"unknown leukodystrophy","secondary_identifiers":["Orphanet:84096"],"termid":"MONDO:0019397","xrefs":{"Monarch":{"xref_id":"0019397"}}}


id: MONDO:0012036
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"systemic lupus erythematosus, susceptibility to, 4","secondary_identifiers":["UMLS:C1842057","MEDGEN:374849","OMIM:608437"],"synonyms":[{"name":"SLEB4","type":"exact"},{"name":"systemic lupus erythematosus, susceptibility to, 4","type":"exact"}],"termid":"MONDO:0012036","xrefs":{"Monarch":{"xref_id":"0012036"}}}


id: PBO:0081390
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 230","termid":"PBO:0081390"}


id: GO:0120549
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of (1->6)-alpha-D-glucosidic linkages to branches with degrees of polymerization of three or four glucose residues in limit dextrin.","definition_xrefs":["EC:3.2.1.196"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hydrolase activity, hydrolyzing O-glycosyl compounds","termid":"GO:0004553"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016798","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"limit dextrin alpha-1,6-maltotetraose-hydrolase activity","secondary_identifiers":["MetaCyc:RXN0-5146"],"synonyms":[{"name":"glycogen debranching enzyme","type":"exact"}],"termid":"GO:0120549"}


id: PBO:0061452
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear receptor subfamily 4 group A member 3","termid":"PBO:0061452"}


id: PBO:0076634
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transducin beta like 1 Y-linked pseudogene 1","termid":"PBO:0076634"}


id: PBO:0069475
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 742, pseudogene","termid":"PBO:0069475"}


id: GO:0034391
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of smooth muscle cell apoptotic process.","definition_xrefs":["GOC:BHF","GOC:rl","GOC:mtg_apoptosis"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of muscle cell apoptotic process","termid":"GO:0010660"},{"relation_name":"regulates","term_name":"smooth muscle cell apoptotic process","termid":"GO:0034390"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of smooth muscle cell apoptotic process","synonyms":[{"name":"regulation of SMC apoptosis","type":"exact"},{"name":"regulation of smooth muscle cell apoptosis","type":"narrow"}],"termid":"GO:0034391"}


id: PBO:0041731
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium/calmodulin dependent protein kinase II inhibitor 2","termid":"PBO:0041731"}


id: GO:1901178
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving spheroidene.","definition_xrefs":["GOC:yaf","UniPathway:UPA00683","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"xanthophyll metabolic process","termid":"GO:0016122"},{"relation_name":"is_a","term_name":"ether metabolic process","termid":"GO:0018904"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0008150","GO:0006629","GO:0044281"],"is_obsolete":false,"name":"spheroidene metabolic process","synonyms":[{"name":"spheroidene metabolism","type":"exact"}],"termid":"GO:1901178"}


id: GO:1900997
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of benzene.","definition_xrefs":["GOC:TermGenie","GOC:yaf","UniPathway:UPA00272"],"direct_ancestors":[{"relation_name":"is_a","term_name":"benzene metabolic process","termid":"GO:0018910"},{"relation_name":"is_a","term_name":"hydrocarbon biosynthetic process","termid":"GO:0120251"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"benzene biosynthetic process","synonyms":[{"name":"benzene anabolism","type":"exact"},{"name":"benzene biosynthesis","type":"exact"},{"name":"benzene formation","type":"exact"},{"name":"benzene synthesis","type":"exact"}],"termid":"GO:1900997"}


id: PBO:0056621
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mediator complex subunit 1","termid":"PBO:0056621"}


id: MONDO:0000432
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A clonal neoplasm of small B-lymphocytes, lymphoplasmacytoid cells, and plasma cells involving the bone marrow, lymph nodes, and the spleen. The majority of patients have a serum IgM paraprotein.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"B-cell neoplasm","termid":"MONDO:0004095"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"lymphoplasmacytic lymphoma","secondary_identifiers":["ONCOTREE:LPL","ICDO:9761/3","NCIT:C3212","icd11.foundation:2058944823","DOID:0050747","ICD9:273.3","UMLS:C0334633","MEDGEN:473052","SCTID:190817009","ICDO:9671/3"],"synonyms":[{"name":"Immunocytoma, lymphoplasmacytic type","type":"exact"},{"name":"lymphoma, lymphoplasmacytic, malignant","type":"exact"},{"name":"lymphoma, plasmacytic","type":"exact"},{"name":"lymphoplasmacytic lymphoma","type":"exact"},{"name":"lymphoplasmacytic lymphoma (Waldenstrom macroglobulinemia)","type":"exact"},{"name":"lymphoplasmacytoid lymphoma","type":"exact"}],"termid":"MONDO:0000432","xrefs":{"Monarch":{"xref_id":"0000432"}}}


id: GO:0099148
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of synaptic vesicle docking.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of vesicle docking","termid":"GO:0106020"},{"relation_name":"regulates","term_name":"synaptic vesicle docking","termid":"GO:0016081"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0140056"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0140056"],"is_obsolete":false,"name":"regulation of synaptic vesicle docking","termid":"GO:0099148"}


id: GO:0018287
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The incorporation of iron into a 3Fe-4S iron-sulfur cluster via tris-L-cysteinyl triiron tetrasulfide.","definition_xrefs":["RESID:AA0139"],"gene_count":0,"genotype_count":0,"name":"obsolete iron incorporation into iron-sulfur cluster via tris-L-cysteinyl triiron tetrasulfide (obsolete GO:0018287)","synonyms":[{"name":"iron incorporation into iron-sulphur cluster via tris-L-cysteinyl triiron tetrasulphide","type":"exact"}],"termid":"GO:0018287"}


id: GO:0009494
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete chloroplast-type ferredoxin (obsolete GO:0009494)","synonyms":[{"name":"chloroplast-type ferredoxin","type":"exact"}],"termid":"GO:0009494"}


id: GO:1904982
data:
  {"annotated_genes":["SJAG_03960"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[97648],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0106082"}]},"cv_name":"biological_process","definition":"The process in which sucrose is transported across a membrane.","definition_xrefs":["PMID:11136464","GO_REF:0000069","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sucrose transport","termid":"GO:0015770"},{"relation_name":"is_a","term_name":"carbohydrate transmembrane transport","termid":"GO:0034219"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03960":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0055085"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0055085","GO:0051179"],"is_obsolete":false,"name":"sucrose transmembrane transport","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1904982","terms_by_termid":{"GO:0106082":null}}


id: GO:0005112
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a Notch (N) protein, a surface receptor.","definition_xrefs":["GOC:ceb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor binding","termid":"GO:0005102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005488","GO:0005515"],"is_obsolete":false,"name":"Notch binding","synonyms":[{"name":"N binding","type":"exact"},{"name":"N ligand","type":"narrow"},{"name":"Notch ligand","type":"narrow"},{"name":"Notch receptor binding","type":"exact"}],"termid":"GO:0005112"}


id: RO:HOM0000022
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Paralogy that results from a whole genome duplication event.","direct_ancestors":[{"relation_name":"is_a","term_name":"in_paralogy_relationship_with","termid":"RO:HOM0000011"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"in_ohnology_relationship_with","synonyms":[{"name":"homoeology","type":"related"},{"name":"ohnologous to","type":"exact"}],"termid":"RO:HOM0000022"}


id: PBO:0043549
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"collagen type III alpha 1 chain","termid":"PBO:0043549"}


id: GO:0051550
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving aurones, a series of plant flavonoids that provide a yellow colour to flowers. They have the basic skeletal structure of two benzene rings joined by a linear C3 chain (C6-C3-C6). Aurones exist mostly as 6-O-glucosides.","definition_xrefs":["PMID:20035037"],"direct_ancestors":[{"relation_name":"is_a","term_name":"flavonoid metabolic process","termid":"GO:0009812"},{"relation_name":"is_a","term_name":"ketone metabolic process","termid":"GO:0042180"},{"relation_name":"is_a","term_name":"pigment metabolic process","termid":"GO:0042440"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"aurone metabolic process","synonyms":[{"name":"aurone metabolism","type":"exact"},{"name":"benzalcoumaran-3-one metabolic process","type":"exact"},{"name":"benzalcoumaran-3-one metabolism","type":"exact"}],"termid":"GO:0051550"}


id: PBO:0046286
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"EMAP like 4","termid":"PBO:0046286"}


id: GO:0006299
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The repair of mismatched DNA where the gap to be repaired is only one nucleotide. DNA polymerase is the preferred polymerase in short patch repair, performing gap filling DNA synthesis and removal of the 5'-deoxyribose phosphate of the abasic site.","definition_xrefs":["PMID:10660619","PMID:10878254"],"gene_count":0,"genotype_count":0,"name":"obsolete short patch mismatch repair system (obsolete GO:0006299)","synonyms":[{"name":"short patch mismatch repair system","type":"exact"}],"termid":"GO:0006299"}


id: SO:0000535
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene, one J-gene and one C-gene.","direct_ancestors":[{"relation_name":"has_part","term_name":"V_gene_segment","termid":"SO:0000466"},{"relation_name":"has_part","term_name":"J_gene_segment","termid":"SO:0000470"},{"relation_name":"has_part","term_name":"C_gene_segment","termid":"SO:0000478"},{"relation_name":"is_a","term_name":"vertebrate_immunoglobulin_T_cell_receptor_gene_cluster","termid":"SO:0000482"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V_J_C_cluster","synonyms":[{"name":"V J C cluster","type":"exact"},{"name":"V-J-C-CLUSTER","type":"exact"}],"termid":"SO:0000535"}


id: GO:0070208
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The formation of a protein heterotrimer, a macromolecular structure consisting of three noncovalently associated subunits, of which not all are identical.","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein heterooligomerization","termid":"GO:0051291"},{"relation_name":"is_a","term_name":"protein trimerization","termid":"GO:0070206"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0065003"}],"interesting_parent_ids":["GO:0065003","GO:0044085","GO:0008150"],"is_obsolete":false,"name":"protein heterotrimerization","synonyms":[{"name":"protein heterotrimer assembly","type":"exact"},{"name":"protein heterotrimer biosynthesis","type":"exact"},{"name":"protein heterotrimer biosynthetic process","type":"exact"},{"name":"protein heterotrimer formation","type":"exact"}],"termid":"GO:0070208"}


id: PBO:0109263
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retrograde transport protein, Golgi to ER, Erd1/Gmn2","termid":"PBO:0109263"}


id: SO:0000574
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Rearranged genomic DNA of immunoglobulin/T-cell receptor gene including L-part1, V-intron and V-D-J-exon, with the 5'UTR (SO:0000204) and 3'UTR (SO:0000205).","direct_ancestors":[{"relation_name":"is_a","term_name":"vertebrate_immunoglobulin_T_cell_receptor_rearranged_segment","termid":"SO:0000936"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VDJ_gene_segment","synonyms":[{"name":"V-D-J-GENE","type":"exact"},{"name":"VDJ gene","type":"exact"}],"termid":"SO:0000574"}


id: MONDO:0001156
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disorder characterized by an enduring pattern of unstable self-image and mood together with volatile interpersonal relationships, self-damaging impulsivity, recurrent suicidal threats or gestures and/or self-mutilating behavior.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"personality disorder","termid":"MONDO:0002028"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"borderline personality disorder","secondary_identifiers":["NCIT:C92633","SCTID:20010003","HP:0012076","UMLS:C0006012","DOID:10930","ICD9:301.83","MEDGEN:14197","MESH:D001883","icd11.foundation:189289487"],"synonyms":[{"name":"BPD","type":"exact"},{"name":"borderline personality disorder","type":"exact"},{"name":"borderline personality disorder (disease)","type":"exact"}],"termid":"MONDO:0001156","xrefs":{"Monarch":{"xref_id":"0001156"}}}


id: MONDO:0007294
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An autosomal dominant congenital disorder affecting the skeletal muscles. Microscopically, it is characterized by disorganized areas, which are called cores, seen usually in the center of the muscle fibers. Clinically it presents as mild to severe muscle weakness. It may be associated with skeletal abnormalities including scoliosis, joint deformities, and hip dislocation.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myofibrillar myopathy","termid":"MONDO:0018943"},{"relation_name":"is_a","term_name":"RYR1-related myopathy","termid":"MONDO:0100150"},{"relation_name":"is_a","term_name":"TPM2-related myopathy","termid":"MONDO:0100196"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320","MONDO:0005336"],"is_obsolete":false,"name":"central core myopathy","secondary_identifiers":["icd11.foundation:2065822840","OMIM:117000","DOID:3529","EFO:1000855","NANDO:1200479","SCTID:43152001","UMLS:C5830701","NANDO:2200870","Orphanet:597","NCIT:C83010","GARD:6014","MEDGEN:1841337","MESH:D020512"],"synonyms":[{"name":"CCD","type":"related"},{"name":"Cco","type":"related"},{"name":"Shy-Magee syndrome","type":"related"},{"name":"central CORE disease of muscle","type":"related"},{"name":"central core disease","type":"exact"},{"name":"minicore myopathy, moderate, with hand involvement","type":"related"},{"name":"multicore myopathy, moderate, with hand involvement","type":"related"},{"name":"multiminicore disease, moderate, with hand involvement","type":"related"},{"name":"muscle core disease","type":"related"},{"name":"muscular central core disease","type":"related"},{"name":"myopathy, central core","type":"related"},{"name":"myopathy, central fibrillar","type":"related"},{"name":"neuromuscular disease, congenital, with uniform type 1 Fiber","type":"related"},{"name":"neuromuscular disease, congenital, with uniform type 1 Fibre","type":"related"}],"termid":"MONDO:0007294","xrefs":{"Monarch":{"xref_id":"0007294"}}}


id: PBO:0001616
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Large and Small Daughter","termid":"PBO:0001616"}


id: GO:1903761
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization.","definition_xrefs":["GOC:BHF","GO_REF:0000059","GOC:TermGenie","PMID:18337493","GOC:rl","GOC:mtg_cardiac_conduct_nov11"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization (obsolete GO:1903761)","synonyms":[{"name":"down regulation of voltage gated potassium channel activity involved in ventricular cardiac muscle cell action potential","type":"narrow"},{"name":"down regulation of voltage-dependent potassium channel activity involved in ventricular cardiac muscle cell action potential","type":"exact"},{"name":"down regulation of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization","type":"exact"},{"name":"down regulation of voltage-gated potassium ion channel activity involved in ventricular cardiac muscle cell action potential","type":"exact"},{"name":"down regulation of voltage-sensitive potassium channel involved in ventricular cardiac muscle cell action potential","type":"exact"},{"name":"down-regulation of voltage gated potassium channel activity involved in ventricular cardiac muscle cell action potential","type":"narrow"},{"name":"down-regulation of voltage-dependent potassium channel activity involved in ventricular cardiac muscle cell action potential","type":"exact"},{"name":"down-regulation of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization","type":"exact"},{"name":"down-regulation of voltage-gated potassium ion channel activity involved in ventricular cardiac muscle cell action potential","type":"exact"},{"name":"down-regulation of voltage-sensitive potassium channel involved in ventricular cardiac muscle cell action potential","type":"exact"},{"name":"downregulation of voltage gated potassium channel activity involved in ventricular cardiac muscle cell action potential","type":"narrow"},{"name":"downregulation of voltage-dependent potassium channel activity involved in ventricular cardiac muscle cell action potential","type":"exact"},{"name":"downregulation of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization","type":"exact"},{"name":"downregulation of voltage-gated potassium ion channel activity involved in ventricular cardiac muscle cell action potential","type":"exact"},{"name":"downregulation of voltage-sensitive potassium channel involved in ventricular cardiac muscle cell action potential","type":"exact"},{"name":"inhibition of voltage gated potassium channel activity involved in ventricular cardiac muscle cell action potential","type":"narrow"},{"name":"inhibition of voltage-dependent potassium channel activity involved in ventricular cardiac muscle cell action potential","type":"narrow"},{"name":"inhibition of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization","type":"narrow"},{"name":"inhibition of voltage-gated potassium ion channel activity involved in ventricular cardiac muscle cell action potential","type":"narrow"},{"name":"inhibition of voltage-sensitive potassium channel involved in ventricular cardiac muscle cell action potential","type":"narrow"},{"name":"negative regulation of voltage gated potassium channel activity involved in ventricular cardiac muscle cell action potential","type":"narrow"},{"name":"negative regulation of voltage-dependent potassium channel activity involved in ventricular cardiac muscle cell action potential","type":"exact"},{"name":"negative regulation of voltage-gated potassium ion channel activity involved in ventricular cardiac muscle cell action potential","type":"exact"},{"name":"negative regulation of voltage-sensitive potassium channel involved in ventricular cardiac muscle cell action potential","type":"exact"}],"termid":"GO:1903761"}


id: PATO:0002486
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a process by virtue of that process having two or more organisms as participants.","definition_xrefs":["PATOC:DS"],"direct_ancestors":[{"relation_name":"is_a","term_name":"process quality","termid":"PATO:0001236"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"multi-organismal process quality","termid":"PATO:0002486"}


id: PBO:0041933
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CBX3 pseudogene 1","termid":"PBO:0041933"}


id: MONDO:0004416
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"infiltrating bladder urothelial carcinoma","termid":"MONDO:0003890"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"plasmacytoid variant infiltrating bladder urothelial carcinoma","secondary_identifiers":["UMLS:C1512742","ONCOTREE:SRCBC","DOID:7968","NCIT:C39823","MEDGEN:268576"],"synonyms":[{"name":"infiltrating bladder urothelial carcinoma, plasmacytoid variant","type":"exact"},{"name":"plasmacytoid/signet ring cell bladder carcinoma","type":"related"}],"termid":"MONDO:0004416","xrefs":{"Monarch":{"xref_id":"0004416"}}}


id: GO:1901872
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of ecgonone methyl ester.","definition_xrefs":["GOC:TermGenie","PMID:22665766"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tropane alkaloid biosynthetic process","termid":"GO:0009710"},{"relation_name":"is_a","term_name":"ketone biosynthetic process","termid":"GO:0042181"},{"relation_name":"is_a","term_name":"ecgonone methyl ester metabolic process","termid":"GO:1901870"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0019748"],"is_obsolete":false,"name":"ecgonone methyl ester biosynthetic process","synonyms":[{"name":"ecgonone methyl ester anabolism","type":"exact"},{"name":"ecgonone methyl ester biosynthesis","type":"exact"},{"name":"ecgonone methyl ester formation","type":"exact"},{"name":"ecgonone methyl ester synthesis","type":"exact"}],"termid":"GO:1901872"}


id: PR:Q9US42
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- urg3 gene.","definition_xrefs":["UniProtKB:Q9US42","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein urg3 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1002.18","synonyms":[{"name":"Spom972h-urg3","type":"exact"}],"termid":"PR:Q9US42"}


id: MONDO:0012791
data:
  {"annotated_genes":["SJAG_03813"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88154],"is_not":false,"summary":null,"term":"MONDO:0012791"}]},"cv_name":"mondo","definition":"Mitochondrial DNA depletion syndrome, encephalomyopathic form with methylmalonic aciduria is characterized by the association of a mitochondrial encephalomyopathy and an aminoacidopathy. It has been described in two brothers presenting with developmental delay, neurological signs, deafness, exercise intolerance, lactic acidosis and elevation of several plasmatic amino acids. Mitochondria morphology was found to be abnormal on muscle biopsy. Transmission is likely to be linked to maternal mitochondrial DNA.","definition_xrefs":["Orphanet:1933"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"mitochondrial DNA depletion syndrome, encephalomyopathic form","termid":"MONDO:0016796"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03813":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004069"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0004069","MONDO:0005066"],"is_obsolete":false,"name":"mitochondrial DNA depletion syndrome, encephalomyopathic form with methylmalonic aciduria","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:3681","MEDGEN:413170","OMIM:612073","MESH:C567624","UMLS:C2749864","DOID:0080124"],"synonyms":[{"name":"MTDPS5","type":"related"},{"name":"booth-Haworth-Dilling syndrome","type":"exact"},{"name":"encephalomyopathy","type":"related"},{"name":"mitochondrial DNA depletion syndrome 5","type":"exact"},{"name":"mitochondrial DNA depletion syndrome 5 (encephalomyopathic with or without methylmalonic aciduria)","type":"related"},{"name":"mitochondrial DNA depletion syndrome type 5","type":"exact"},{"name":"mitochondrial DNA depletion syndrome, encephalomyopathic form, with or without methylmalonic aciduria, autosomal recessive, Sucla2-related","type":"related"},{"name":"mitochondrial dna depletion syndrome, encephalomyopathic form with methylmalonic aciduria, autosomal recessive","type":"related"},{"name":"mitochondrial encephalomyopathy aminoacidopathy","type":"related"},{"name":"mitochondrial encephalomyopathy-aminoacidopathy syndrome","type":"exact"},{"name":"mtDNA depletion syndrome, encephalomyopathic form with methylmalonic aciduria","type":"exact"}],"termid":"MONDO:0012791","terms_by_termid":{"MONDO:0012791":null},"xrefs":{"Monarch":{"xref_id":"0012791"}}}


id: PBO:0005591
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"chitin synthase regulatory factor Chr2 (predicted)","termid":"PBO:0005591"}


id: PBO:0111750
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cdc20/Fizzy subfamily","termid":"PBO:0111750"}


id: GO:0021663
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that gives rise to rhombomere 4. This process pertains to the initial formation of a structure from unspecified parts. Rhombomeres are transverse segments of the developing rhombencephalon. Rhombomeres are lineage restricted, express different genes from one another, and adopt different developmental fates. Rhombomeres are numbered in anterior to posterior order.","definition_xrefs":["GO_REF:0000021","GOC:cls","GOC:dph","GOC:curators","GOC:dgh","GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rhombomere formation","termid":"GO:0021594"},{"relation_name":"part_of","term_name":"rhombomere 4 morphogenesis","termid":"GO:0021661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"rhombomere 4 formation","termid":"GO:0021663"}


id: CHEBI:16284
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dATP","termid":"CHEBI:16284"}


id: PBO:0071069
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 71","termid":"PBO:0071069"}


id: PBO:0016092
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centromere protein Mis20/Eic2","termid":"PBO:0016092"}


id: PBO:0085421
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Plasma membrane transporter responsible for the uptake of thiamine; contributes to uptake of 5-aminoimidazole-4-carboxamide-1-beta-D-ribofuranoside (acadesine); member of the major facilitator superfamily of transporters; mutation of human ortholog causes thiamine-responsive megaloblastic anemia","termid":"PBO:0085421"}


id: PBO:0001790
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dipeptidyl peptidase (predicted)","termid":"PBO:0001790"}


id: PBO:0012314
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NGG1 interacting factor 3 family, implicated in transcription","termid":"PBO:0012314"}


id: PBO:0078736
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA methyltransferase O","termid":"PBO:0078736"}


id: GO:0150059
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The series of molecular signals initiated by an extracellular amylin, or another ligand, combining with an amylin receptor 1 (AMY1), a G protein-coupled receptor complex, on the surface of the target cell. Other ligands that have been shown to initiate the AMY1 signaling pathway include the calcitonin related peptide (CGRP) and adrenomedullin (AM/ADM).","definition_xrefs":["GOC:aruk","GOC:bc","PMID:22500019"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amylin receptor signaling pathway","termid":"GO:0097647"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"amylin receptor 1 signaling pathway","synonyms":[{"name":"AMY1 signaling pathway","type":"exact"}],"termid":"GO:0150059"}


id: MONDO:0004087
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A morphologic variant of large cell lung carcinoma characterized by the presence of a solid nodular or anastomotic trabecular growth pattern, peripheral palisading, and comedo type necrosis.","definition_xrefs":["NCIT:C7266"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"squamous cell lung carcinoma","termid":"MONDO:0005097"},{"relation_name":"is_a","term_name":"lung large cell carcinoma","termid":"MONDO:0003050"},{"relation_name":"is_a","term_name":"basaloid carcinoma","termid":"MONDO:0006102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"basaloid large cell lung carcinoma","secondary_identifiers":["MEDGEN:231419","UMLS:C1332463","DOID:7045","ONCOTREE:BLCLC"],"synonyms":[{"name":"basaloid large cell carcinoma of the lung","type":"related"},{"name":"basaloid large cell lung carcinoma","type":"exact"},{"name":"basaloid lung carcinoma","type":"related"}],"termid":"MONDO:0004087","xrefs":{"Monarch":{"xref_id":"0004087"}}}


id: CHEBI:16467
data:
  {"annotation_feature_type":"gene","cv_name":"chebi_ontology","definition":"An L-alpha-amino acid that is the L-isomer of arginine.","direct_ancestors":[{"relation_name":"is_a","term_name":"chemical entity","termid":"CHEBI:24431"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-arginine","termid":"CHEBI:16467"}


id: PBO:0028941
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_poly(U)_polymerase_activity","termid":"PBO:0028941"}


