# terms

id: MOD:00453
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively replaces a residue alpha-amino- or alpha-imino-hydrogen with a quaternary amine reagent light form group.","definition_xrefs":["Unimod:60","PubMed:11857757"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isotope tagged reagent derivatized residue","termid":"MOD:01426"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"quaternary amine labeling reagent light form (N-term & K)","synonyms":[{"name":"GIST-Quat","type":"related"},{"name":"Quaternary amine labeling reagent light form (N-term & K)","type":"related"}],"termid":"MOD:00453"}


id: PBO:0048242
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G antigen 12C","termid":"PBO:0048242"}


id: GO:0032760
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of tumor necrosis factor production.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:10891884","PMID:15560120"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of tumor necrosis factor production","termid":"GO:0032680"},{"relation_name":"is_a","term_name":"positive regulation of tumor necrosis factor superfamily cytokine production","termid":"GO:1903557"},{"relation_name":"positively_regulates","term_name":"tumor necrosis factor production","termid":"GO:0032640"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"positive regulation of tumor necrosis factor production","secondary_identifiers":["GO:1904469","GO:0042535"],"synonyms":[{"name":"activation of tumor necrosis factor production","type":"narrow"},{"name":"positive regulation of TNF production","type":"exact"},{"name":"positive regulation of TNF secretion","type":"narrow"},{"name":"positive regulation of TNF-alpha production","type":"exact"},{"name":"positive regulation of cachectin secretion","type":"narrow"},{"name":"positive regulation of tumor necrosis factor biosynthesis","type":"narrow"},{"name":"positive regulation of tumor necrosis factor biosynthetic process","type":"narrow"},{"name":"positive regulation of tumor necrosis factor formation","type":"narrow"},{"name":"positive regulation of tumor necrosis factor secretion","type":"narrow"},{"name":"positive regulation of tumor necrosis factor-alpha production","type":"exact"},{"name":"stimulation of tumor necrosis factor production","type":"narrow"},{"name":"up regulation of tumor necrosis factor production","type":"exact"},{"name":"up-regulation of tumor necrosis factor production","type":"exact"},{"name":"upregulation of tumor necrosis factor production","type":"exact"}],"termid":"GO:0032760"}


id: PBO:0043677
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coronin 2A","termid":"PBO:0043677"}


id: PBO:0031401
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_cell_wall_during_vegetative_growth","termid":"PBO:0031401"}


id: GO:0003115
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of reductions in the diameter of blood vessels as a result of secretion of epinephrine into the bloodstream or released by nerve endings.","definition_xrefs":["GOC:mtg_cardio"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of vasoconstriction","termid":"GO:0019229"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of vasoconstriction by epinephrine","termid":"GO:0003115"}


id: GO:0061884
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of mini excitatory postsynaptic potential. Mini excitatory postsynaptic potential is a process that leads to a temporary increase in postsynaptic potential due to the flow of positively charged ions into the postsynaptic cell, induced by the spontaneous release of a single vesicle of an excitatory neurotransmitter into the synapse.","definition_xrefs":["GOC:bc","GOC:aruk","PMID:20395454"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modulation of excitatory postsynaptic potential","termid":"GO:0098815"},{"relation_name":"regulates","term_name":"mini excitatory postsynaptic potential","termid":"GO:0098816"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"regulation of mini excitatory postsynaptic potential","termid":"GO:0061884"}


id: PBO:0052418
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kirre like nephrin family adhesion molecule 1","termid":"PBO:0052418"}


id: PBO:0085198
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Outer kinetochore protein and component of the Ctf19 complex; involved in the establishment of pericentromeric cohesion during mitosis; prevents non-disjunction of sister chromatids during meiosis II; forms a stable complex with Chl4p; required for localization of Sgo1p to pericentric sites during meiosis I; orthologous to human centromere constitutive-associated network (CCAN) subunit CENP-L and fission yeast fta1","termid":"PBO:0085198"}


id: GO:1902124
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving (+)-pinoresinol.","definition_xrefs":["PMID:8910615","PMID:9872995","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lignan metabolic process","termid":"GO:0009806"},{"relation_name":"is_a","term_name":"ether metabolic process","termid":"GO:0018904"},{"relation_name":"is_a","term_name":"phenol-containing compound metabolic process","termid":"GO:0018958"},{"relation_name":"is_a","term_name":"benzene-containing compound metabolic process","termid":"GO:0042537"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0019748"],"is_obsolete":false,"name":"(+)-pinoresinol metabolic process","synonyms":[{"name":"(+)-pinoresinol metabolism","type":"exact"}],"termid":"GO:1902124"}


id: GO:0032716
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of interleukin-7 production.","definition_xrefs":["GOC:mah","PMID:25962782"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokine production","termid":"GO:0001818"},{"relation_name":"is_a","term_name":"regulation of interleukin-7 production","termid":"GO:0032676"},{"relation_name":"negatively_regulates","term_name":"interleukin-7 production","termid":"GO:0032636"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of interleukin-7 production","secondary_identifiers":["GO:0150113","GO:0045412"],"synonyms":[{"name":"down regulation of interleukin-7 production","type":"exact"},{"name":"down-regulation of interleukin-7 production","type":"exact"},{"name":"downregulation of interleukin-7 production","type":"exact"},{"name":"inhibition of interleukin-7 production","type":"narrow"},{"name":"negative regulation of IL-7 production","type":"exact"},{"name":"negative regulation of interleukin-7 biosynthetic process","type":"narrow"},{"name":"negative regulation of interleukin-7 secretion","type":"narrow"}],"termid":"GO:0032716"}


id: GO:0007366
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Allocation of cells to parasegments in the embryo, through the action of overlapping series of pair rule gene activities.","definition_xrefs":["ISBN:0632030488","ISBN:0879694238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"periodic partitioning","termid":"GO:0007365"},{"relation_name":"is_a","term_name":"anterior/posterior pattern specification","termid":"GO:0009952"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"periodic partitioning by pair rule gene","termid":"GO:0007366"}


id: PATO:0000572
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000572 relative length value (obsolete PATO:0000572)","termid":"PATO:0000572"}


id: GO:0050312
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 2-sulfoacetaldehyde + H2O = acetate + sulfite.","definition_xrefs":["EC:4.4.1.12","MetaCyc:SULFOACETALDEHYDE-LYASE-RXN"],"gene_count":0,"genotype_count":0,"name":"obsolete sulfoacetaldehyde lyase activity (obsolete GO:0050312)","synonyms":[{"name":"sulphoacetaldehyde lyase activity","type":"exact"}],"termid":"GO:0050312"}


id: GO:0090695
data:
  {"annotated_genes":["SJAG_04508","SJAG_02606"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[89696,112525],"is_not":false,"summary":null,"term":"GO:0090695"}]},"cv_name":"cellular_component","definition":"A eukaryotically conserved heterodimeric protein complex (comprising Wings apart-like protein and the Pds5 Armadillo repeat cohesin associated protein) involved in the loading and unloading of a cohesin complex onto DNA.","definition_xrefs":["GOC:vw","PMID:26687354"],"direct_ancestors":[{"relation_name":"is_a","term_name":"SMC loading complex","termid":"GO:0032116"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02606":null,"SJAG_04508":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005575","GO:0005634","GO:0032991"],"is_obsolete":false,"name":"Wpl/Pds5 cohesin loading/unloading complex","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0090695","terms_by_termid":{"GO:0090695":null}}


id: PBO:0042141
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-C motif chemokine ligand 3 like 1","termid":"PBO:0042141"}


id: PBO:0039369
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AMMECR nuclear protein 1","termid":"PBO:0039369"}


id: GO:0072274
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the metanephric glomerular basement membrane over time, from its formation to the mature structure. The metanephric glomerular basement membrane is the basal laminal portion of the metanephric glomerulus which performs the actual filtration.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glomerular basement membrane development","termid":"GO:0032836"},{"relation_name":"part_of","term_name":"metanephric glomerulus development","termid":"GO:0072224"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric glomerular basement membrane development","termid":"GO:0072274"}


id: PBO:0057997
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3921","termid":"PBO:0057997"}


id: PBO:0055823
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LRAT domain containing 1","termid":"PBO:0055823"}


id: PBO:0091922
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Armadillo Sfi1 Interactor","termid":"PBO:0091922"}


id: MOD:01419
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that crosslinks two residues by condensation of a serine or threonine hydroxyl with the carbonyl of the preceding residue to form an oxazole or oxazoline ring, or by rearrangement and condensation of a cysteine with the carbonyl of the preceding residue to form a 1,3-oxazole-4-carbothionic acid.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxazole/thiazole ring crosslinked residues","termid":"MOD:00690"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oxazole/oxazoline ring crosslinked residues","termid":"MOD:01419"}


id: PBO:0078989
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA suppressor (anticodon TTA) 2-1","termid":"PBO:0078989"}


id: PBO:0070098
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 12 pseudogene","termid":"PBO:0070098"}


id: GO:0003092
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which renal water excretion is decreased.","definition_xrefs":["GOC:mtg_cardio"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of urine volume","termid":"GO:0035811"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"renal water retention","synonyms":[{"name":"negative regulation of renal water excretion","type":"exact"}],"termid":"GO:0003092"}


id: PBO:0113440
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Sterol-binding protein located at plasma membrane-ER contact sites; role in retrograde transport of sterols from plasma membrane to ER, which is inhibited via phosphorylation by TORC2-dependent protein kinase Ypk1p; contains two StART-like domains that bind sterols and a GRAM domain; co-localizes to puncta in the cortical ER with Sip3p; one of six StART-like domain-containing proteins in yeast that may be involved in sterol transfer between intracellular membranes; conserved across eukaryotes","termid":"PBO:0113440"}


id: PBO:0080193
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"VENT homeobox pseudogene 1","termid":"PBO:0080193"}


id: PBO:0064079
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"piwi-interacting RNA cluster 113","termid":"PBO:0064079"}


id: FYPO:0003400
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of 20S ribosomal RNA precursor measured in a cell is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal rRNA or precursor level","termid":"FYPO:0006000"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001312","FYPO:0000257","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"normal 20S rRNA precursor level","synonyms":[{"name":"normal 20S rRNA precursor accumulation","type":"related"},{"name":"normal 20S rRNA precursor level during mitotic cell cycle","type":"related"},{"name":"normal 20S rRNA precursor level during vegetative growth","type":"exact"},{"name":"normal 20S rRNA precursor transcript level","type":"exact"}],"termid":"FYPO:0003400"}


id: MONDO:0003263
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplasm that affects the cerebellum and occurs during childhood.","definition_xrefs":["NCIT:C5970"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cerebellar neoplasm","termid":"MONDO:0002913"},{"relation_name":"is_a","term_name":"childhood infratentorial neoplasm","termid":"MONDO:0002915"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"childhood cerebellar neoplasm","secondary_identifiers":["DOID:5059","UMLS:C1332959","MEDGEN:234124"],"synonyms":[{"name":"childhood cerebellar neoplasm","type":"exact"},{"name":"childhood cerebellar neoplasms","type":"exact"},{"name":"childhood cerebellar tumor","type":"exact"},{"name":"childhood cerebellar tumors","type":"exact"},{"name":"childhood cerebellar tumour","type":"exact"},{"name":"childhood cerebellar tumours","type":"exact"},{"name":"childhood neoplasm of cerebellum","type":"exact"},{"name":"childhood neoplasm of the cerebellum","type":"exact"},{"name":"childhood tumor of cerebellum","type":"exact"},{"name":"childhood tumor of the cerebellum","type":"exact"},{"name":"childhood tumour of cerebellum","type":"exact"},{"name":"childhood tumour of the cerebellum","type":"exact"},{"name":"paediatric cerebellar neoplasm","type":"exact"},{"name":"paediatric cerebellar tumour","type":"exact"},{"name":"paediatric neoplasm of cerebellum","type":"exact"},{"name":"paediatric neoplasm of the cerebellum","type":"exact"},{"name":"paediatric tumour of cerebellum","type":"exact"},{"name":"paediatric tumour of the cerebellum","type":"exact"},{"name":"pediatric cerebellar neoplasm","type":"exact"},{"name":"pediatric cerebellar tumor","type":"exact"},{"name":"pediatric neoplasm of cerebellum","type":"exact"},{"name":"pediatric neoplasm of the cerebellum","type":"exact"},{"name":"pediatric tumor of cerebellum","type":"exact"},{"name":"pediatric tumor of the cerebellum","type":"exact"}],"termid":"MONDO:0003263","xrefs":{"Monarch":{"xref_id":"0003263"}}}


id: PBO:0062312
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 5 subfamily V member 1","termid":"PBO:0062312"}


id: GO:0048794
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the swim bladder over time, from its formation to the mature structure. The swim bladder is used by some fishes to maintain buoyancy and may function in addition as a sound producing organ, a sound receptor, and a respiratory organ.","definition_xrefs":["GOC:mh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"animal organ development","termid":"GO:0048513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"swim bladder development","synonyms":[{"name":"gas bladder development","type":"exact"}],"termid":"GO:0048794"}


id: GO:0009532
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The proteinaceous ground substance of plastids.","definition_xrefs":["ISBN:0943088399"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular anatomical structure","termid":"GO:0110165"},{"relation_name":"part_of","term_name":"plastid","termid":"GO:0009536"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"plastid stroma","termid":"GO:0009532"}


id: SO:0001648
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A transposon that is disrupted by the insertion of another element.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transposable_element","termid":"SO:0000101"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nested_transposon","synonyms":[{"name":"nested transposon","type":"exact"}],"termid":"SO:0001648"}


id: PBO:0062976
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PABPC5 antisense RNA 1","termid":"PBO:0062976"}


id: MOD:01231
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-lysine residue to 3x(13)C labeled N6-propanoyl-L-lysine.","definition_xrefs":["PubMed:11999733","Unimod:59#K","PubMed:12175151","PubMed:12442261","PubMed:11857757"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N6-propanoyl-L-lysine","termid":"MOD:01398"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:01155"},{"rel_name":"is_a","termid":"MOD:01875"}],"interesting_parent_ids":["MOD:01155","MOD:01875"],"is_obsolete":false,"name":"3x(13)C labeled N6-propanoyl-L-lysine","synonyms":[{"name":"Propionate labeling reagent heavy form (+3amu), N-term & K","type":"related"},{"name":"Propionyl:13C(3)","type":"related"}],"termid":"MOD:01231"}


id: MONDO:0009215
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Fanconi anemia caused by mutations of the FANCA gene. FANCA gene mutations are the most common cause of Fanconi anemia. This gene provides instructions for making a protein that is involved in the Fanconi anemia (FA) pathway.","definition_xrefs":["NCIT:C125702"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Fanconi anemia","termid":"MONDO:0019391"},{"relation_name":"is_a","term_name":"non-syndromic limb reduction defect","termid":"MONDO:0019713"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0021190"},{"rel_name":"is_a","termid":"MONDO:0002280"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0021190","MONDO:0002280","MONDO:0005046","MONDO:0005570","MONDO:0005066"],"is_obsolete":false,"name":"Fanconi anemia complementation group A","secondary_identifiers":["MEDGEN:483333","DOID:0111095","GTR:AN1051558","GARD:15170","UMLS:C3469521","OMIM:227650"],"synonyms":[{"name":"Estren-Dameshek variant of Fanconi Anaemia","type":"related"},{"name":"Estren-Dameshek variant of Fanconi Anemia","type":"related"},{"name":"Estren-Dameshek variant of Fanconi pancytopenia","type":"related"},{"name":"FANCA","type":"exact"},{"name":"FANCA Fanconi anaemia","type":"exact"},{"name":"FANCA Fanconi anemia","type":"exact"},{"name":"Fanconi Anaemia","type":"related"},{"name":"Fanconi Anemia","type":"related"},{"name":"Fanconi Anemia, Estren-Dameshek variant","type":"related"},{"name":"Fanconi Anemia, complementation group type a","type":"exact"},{"name":"Fanconi anaemia caused by mutation in FANCA","type":"exact"},{"name":"Fanconi anaemia complementation group type A","type":"exact"},{"name":"Fanconi anemia caused by mutation in FANCA","type":"exact"},{"name":"Fanconi anemia complementation group A","type":"exact"},{"name":"Fanconi anemia complementation group type A","type":"exact"},{"name":"Fanconi anemia, complementation group A","type":"related"}],"termid":"MONDO:0009215","xrefs":{"Monarch":{"xref_id":"0009215"}}}


id: GO:0016729
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of an oxidation-reduction (redox) reaction in which a CH2 group acts as a hydrogen or electron donor and reduces an acceptor other than disulfide, NAD, NADP or oxygen.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete oxidoreductase activity, acting on CH2 groups, other acceptors (obsolete GO:0016729)","synonyms":[{"name":"oxidoreductase activity, acting on CH2 groups, other acceptors","type":"exact"}],"termid":"GO:0016729"}


id: MONDO:0011099
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Human HOXA1 syndromes is characterized by deafness, central hypoventilation, congenital ocular paralysis and developmental retardation. Cardiac anomalies and paralysis of the vocal chords may also be present. Six cases have been reported so far. Transmission is thought to be autosomal recessive.","definition_xrefs":["Orphanet:69739"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"autosomal recessive disease","termid":"MONDO:0006025"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025"],"is_obsolete":false,"name":"human HOXA1 syndromes","secondary_identifiers":["GARD:8333","SCTID:720518006","MEDGEN:330410","OMIM:601536","DOID:0050682","UMLS:C1832215"],"synonyms":[{"name":"ABDS","type":"related"},{"name":"ABSD","type":"exact"},{"name":"Athabascan brainstem dysgenesis syndrome","type":"exact"},{"name":"Athabaskan brainstem dysgenesis","type":"related"},{"name":"Athabaskan brainstem dysgenesis syndrome","type":"exact"},{"name":"BSAS","type":"related"},{"name":"Bosley Salih Alorainy syndrome","type":"related"},{"name":"Bosley-Salih-Alorainy syndrome","type":"related"},{"name":"Human HOXA1 syndromes","type":"related"},{"name":"Navajo brainstem syndrome","type":"exact"}],"termid":"MONDO:0011099","xrefs":{"Monarch":{"xref_id":"0011099"}}}


id: FYPO:0005843
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which trimethylation of lysine at position 9 of histone H3 in centromere outer repeat regions does not occur.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal histone H3-K9 trimethylation at centromere outer repeat during vegetative growth","termid":"FYPO:0000885"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002274"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0002494","FYPO:0001985","FYPO:0002274","FYPO:0000002"],"is_obsolete":false,"name":"abolished histone H3-K9 trimethylation at centromere outer repeat during vegetative growth","synonyms":[{"name":"abolished histone H3 K9 trimethylation at centromere outer repeat during vegetative growth","type":"exact"},{"name":"abolished histone H3-K9 trimethylation at centromere otr during vegetative growth","type":"exact"},{"name":"abolished histone H3-K9 trimethylation at centromere outer repeat during mitotic cell cycle","type":"related"},{"name":"abolished histone H3-K9 trimethylation at centromere outer repeat region during vegetative growth","type":"exact"},{"name":"abolished histone H3-K9 trimethylation at pericentric region during vegetative growth","type":"related"},{"name":"abolished histone H3-K9 trimethylation at pericentromeric region during vegetative growth","type":"related"},{"name":"abolished histone H3K9me3 at centromere outer repeat during vegetative growth","type":"exact"},{"name":"abolished histone lysine H3 K9 trimethylation at centromere outer repeat during vegetative growth","type":"exact"},{"name":"histone H3-K9 trimethylation abolished at centromere outer repeat during vegetative growth","type":"exact"},{"name":"histone H3-K9 trimethylation absent at centromere outer repeat during vegetative growth","type":"exact"}],"termid":"FYPO:0005843"}


id: GO:0033084
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of immature T cell proliferation in the thymus.","definition_xrefs":["GOC:add","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of immature T cell proliferation","termid":"GO:0033083"},{"relation_name":"regulates","term_name":"immature T cell proliferation in thymus","termid":"GO:0033080"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of immature T cell proliferation in thymus","synonyms":[{"name":"regulation of thymic T cell proliferation","type":"exact"},{"name":"regulation of thymocyte cell proliferation","type":"exact"},{"name":"regulation of thymocyte proliferation","type":"exact"}],"termid":"GO:0033084"}


id: GO:0071567
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"A thiol-dependent isopeptidase activity that cleaves UFM1 from a target protein to which it is conjugated.","definition_xrefs":["GOC:sp","PMID:17182609","PMID:20018847"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cysteine-type peptidase activity","termid":"GO:0008234"},{"relation_name":"is_a","term_name":"ubiquitin-like protein peptidase activity","termid":"GO:0019783"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0008233"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0140096","GO:0016787","GO:0008233","GO:0003824"],"is_obsolete":false,"name":"deUFMylase activity","synonyms":[{"name":"UFM1 hydrolase activity","type":"exact"}],"termid":"GO:0071567"}


id: MONDO:0014089
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"diffuse palmoplantar keratoderma","termid":"MONDO:0017666"},{"relation_name":"is_a","term_name":"superficial corneal dystrophy","termid":"MONDO:0020212"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0005093"],"is_obsolete":false,"name":"corneal intraepithelial dyskeratosis-palmoplantar hyperkeratosis-laryngeal dyskeratosis syndrome","secondary_identifiers":["UMLS:C3808876","MEDGEN:815206","GARD:17525","OMIM:616964","Orphanet:352662","OMIM:615225"],"synonyms":[{"name":"CIDED","type":"related"},{"name":"MSPC","type":"exact"},{"name":"corneal intraepithelial dyskeratosis and ectodermal dysplasia","type":"related"},{"name":"corneal intraepithelial dyskeratosis and ectodermal dysplasia, formerly","type":"related"},{"name":"palmoplantar carcinoma, multiple self-healing","type":"exact"},{"name":"palmoplantar carcinoma, multiple self-healing; MSPC","type":"exact"}],"termid":"MONDO:0014089","xrefs":{"Monarch":{"xref_id":"0014089"}}}


id: GO:0035310
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a cell in the larval wing imaginal disc becomes capable of differentiating autonomously into a notum cell, if left in its normal environment.","definition_xrefs":["PMID:10860999"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell fate specification involved in pattern specification","termid":"GO:0060573"},{"relation_name":"part_of","term_name":"wing and notum subfield formation","termid":"GO:0035309"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"notum cell fate specification","termid":"GO:0035310"}


id: MONDO:0004291
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A squamous cell carcinoma of the larynx that arises from the subglottic area. Symptoms include dyspnea and stridor. It spreads to the hypopharynx, trachea, and thyroid gland.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"subglottis carcinoma","termid":"MONDO:0004358"},{"relation_name":"is_a","term_name":"laryngeal squamous cell carcinoma","termid":"MONDO:0005595"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"subglottis squamous cell carcinoma","secondary_identifiers":["UMLS:C0280326","NCIT:C8187","DOID:7585","MEDGEN:124720"],"synonyms":[{"name":"epidermoid carcinoma of subglottis","type":"exact"},{"name":"epidermoid carcinoma of the subglottis","type":"exact"},{"name":"squamous cell carcinoma of subglottis","type":"exact"},{"name":"squamous cell carcinoma of the subglottis","type":"exact"},{"name":"subglottic epidermoid carcinoma","type":"exact"},{"name":"subglottic squamous cell carcinoma","type":"exact"},{"name":"subglottis epidermoid carcinoma","type":"exact"},{"name":"subglottis squamous cell carcinoma","type":"exact"}],"termid":"MONDO:0004291","xrefs":{"Monarch":{"xref_id":"0004291"}}}


id: GO:0006569
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of L-tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid.","definition_xrefs":["ISBN:0198547684"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-tryptophan metabolic process","termid":"GO:0006568"},{"relation_name":"is_a","term_name":"aromatic amino acid family catabolic process","termid":"GO:0009074"},{"relation_name":"is_a","term_name":"indole-containing compound catabolic process","termid":"GO:0042436"},{"relation_name":"is_a","term_name":"erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process","termid":"GO:1902222"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0006520"}],"interesting_parent_ids":["GO:0044281","GO:0006520","GO:0008150"],"is_obsolete":false,"name":"L-tryptophan catabolic process","secondary_identifiers":["Reactome:R-HSA-71240"],"synonyms":[{"name":"tryptophan breakdown","type":"exact"},{"name":"tryptophan catabolic process","type":"related"},{"name":"tryptophan catabolic process, using tryptophanase","type":"narrow"},{"name":"tryptophan catabolism","type":"exact"},{"name":"tryptophan catabolism, using tryptophanase","type":"narrow"},{"name":"tryptophan degradation","type":"exact"}],"termid":"GO:0006569"}


id: PBO:0090650
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TREX2 complex subunit-like (poorly characterized, implicated in transcription or splicing)","termid":"PBO:0090650"}


id: PBO:0062528
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 8 subfamily U member 8","termid":"PBO:0062528"}


id: FYPO:0003908
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of small RNA (such as siRNA) derived from antisense transcription of genes that are expressed in response to stress measured in a cell is greater than normal. All stress-responsive genes, or a specific subset of such genes, may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased antisense RNA level","termid":"FYPO:0003557"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000002","FYPO:0006551"],"is_obsolete":false,"name":"increased stress response gene antisense RNA level","synonyms":[{"name":"increased antisense RNA level at stress response genes","type":"related"},{"name":"increased level of stress response gene antisense transcripts","type":"exact"},{"name":"increased stress response gene antisense RNA accumulation","type":"related"},{"name":"increased stress response gene antisense RNA level during mitotic cell cycle","type":"related"},{"name":"increased stress response gene antisense RNA level during vegetative growth","type":"exact"},{"name":"increased stress response gene antisense transcript level","type":"exact"}],"termid":"FYPO:0003908"}


id: PBO:0062812
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oxysterol binding protein like 9 pseudogene 3","termid":"PBO:0062812"}


id: MONDO:0023663
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete macrocephaly mesodermal hamartoma spectrum (obsolete MONDO:0023663)","secondary_identifiers":["MESH:C537716"],"synonyms":[{"name":"Elattoproteus syndrome","type":"related"},{"name":"gigantism, partial, of hands and feet, nevi, hemihypertrophy, and macrocephaly","type":"related"},{"name":"hemihypertrophy and macrocephaly","type":"related"},{"name":"partial gigantism of hands and feet, nevi, hemihypertrophy, macrocephaly","type":"related"}],"termid":"MONDO:0023663","xrefs":{"Monarch":{"xref_id":"0023663"}}}


id: PBO:0050546
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HPS4 biogenesis of lysosomal organelles complex 3 subunit 2","termid":"PBO:0050546"}


id: MOD:01388
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-threonine residue into 1-amino-2-propanol.","definition_xrefs":["ChEBI:15675","RESID:AA0465","PubMed:7328054"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified L-threonine residue","termid":"MOD:00917"},{"relation_name":"is_a","term_name":"decarboxylated residue","termid":"MOD:00960"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1-amino-2-propanol","synonyms":[{"name":"(2R)-1-aminopropan-2-ol","type":"exact"},{"name":"1-amino-2-hydroxypropane","type":"exact"},{"name":"1-amino-2-propanol","type":"exact"},{"name":"1-methyl-2-aminoethanol","type":"exact"},{"name":"2-amino-1-methylethanol","type":"exact"},{"name":"2-hydroxy-1-propylamine","type":"exact"},{"name":"2-hydroxypropanamine","type":"exact"},{"name":"2-hydroxypropylamine","type":"exact"},{"name":"MOD_RES Decarboxylated threonine","type":"exact"},{"name":"alpha-aminoisopropyl alcohol","type":"exact"},{"name":"dCbxThr","type":"exact"},{"name":"decarboxylated threonine","type":"exact"},{"name":"isopropanolamine","type":"exact"},{"name":"threamine","type":"exact"}],"termid":"MOD:01388"}


id: GO:0016434
data:
  {"annotated_genes":["SJAG_02417","SJAG_03877"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[80746,97501],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009383"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + rRNA = S-adenosyl-L-homocysteine + rRNA containing methylcytosine.","definition_xrefs":["GOC:go-curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA methyltransferase activity","termid":"GO:0008649"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02417":null,"SJAG_03877":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0140098"}],"interesting_parent_ids":["GO:0016740","GO:0140098","GO:0016741","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"rRNA (cytosine) methyltransferase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0016434","terms_by_termid":{"GO:0009383":null}}


id: GO:0044685
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: tetrahydromethanopterin + L-serine = 5,10-methylenetetrahydromethanopterin + glycine + H2O.","definition_xrefs":["PMID:12902326","GOC:mengo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete tetrahydromethanopterin-dependent serine hydroxymethyltransferase activity (obsolete GO:0044685)","termid":"GO:0044685"}


id: MONDO:0000766
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A corneal dystrophy (disease) that involves the corneal epithelium.","definition_xrefs":["MONDO:design_pattern"],"direct_ancestors":[{"relation_name":"is_a","term_name":"corneal dystrophy","termid":"MONDO:0018102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"corneal endothelial dystrophy","secondary_identifiers":["DOID:0060443","MEDGEN:1779156","UMLS:C5441823","SCTID:416960004","ICD9:371.57"],"synonyms":[{"name":"corneal dystrophy (disease) of corneal epithelium","type":"exact"},{"name":"endothelial dystrophy","type":"related"}],"termid":"MONDO:0000766","xrefs":{"Monarch":{"xref_id":"0000766"}}}


id: PBO:0114357
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mRNA splicing surveillance factor, RNA-binding protein Hrb1","termid":"PBO:0114357"}


id: PBO:0091490
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"accumulation and persistence of Swi5 foci in rad54delta cells","termid":"PBO:0091490"}


id: GO:0004551
data:
  {"annotated_genes":["SJAG_00705","SJAG_03091"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[113817],"is_not":false,"summary":null,"term":"GO:0004551"},{"annotations":[107057],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000210"},{"annotations":[74166],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035529"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: a dinucleotide + H2O = 2 mononucleotides.","definition_xrefs":["PMID:2848456","PMID:4405504"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrophosphatase activity","termid":"GO:0016462"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00705":null,"SJAG_03091":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016787"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"dinucleotide phosphatase activity","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["Reactome:R-HSA-196955"],"synonyms":[{"name":"dinucleotide nucleotidohydrolase activity","type":"related"},{"name":"nucleotide diphosphatase activity","type":"broad"},{"name":"nucleotide pyrophosphatase activity","type":"exact"}],"termid":"GO:0004551","terms_by_termid":{"GO:0000210":null,"GO:0004551":null,"GO:0035529":null}}


id: GO:0006845
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of aspartate and glutamate into, out of or within a mitochondrion.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete mitochondrial aspartate/glutamate transport (obsolete GO:0006845)","synonyms":[{"name":"mitochondrial aspartate/glutamate transport","type":"exact"}],"termid":"GO:0006845"}


id: GO:0042014
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with interleukin-19 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.","definition_xrefs":["GOC:signaling","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor activity","termid":"GO:0004896"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0038023"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0038023","GO:0003674"],"is_obsolete":false,"name":"interleukin-19 receptor activity","synonyms":[{"name":"IL-19 receptor activity","type":"exact"},{"name":"IL-19R","type":"exact"}],"termid":"GO:0042014"}


id: PBO:0075839
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SSU72 homolog, RNA polymerase II CTD phosphatase","termid":"PBO:0075839"}


id: FYPO:0006487
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of phosphatidylinositol-3,4-bisphosphate measured in a cell is higher than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased cellular phosphoinositide level","termid":"FYPO:0001286"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"increased cellular phosphatidylinositol-3,4-bisphosphate level","synonyms":[{"name":"increased cellular 1-phosphatidyl-1D-myo-inositol 3,4-bisphosphate level","type":"exact"},{"name":"increased cellular PI(3,4)P2 level","type":"exact"},{"name":"increased cellular phosphatidylinositol-3,4-bisphosphate level during mitotic cell cycle","type":"related"},{"name":"increased cellular phosphatidylinositol-3,4-bisphosphate level during vegetative growth","type":"exact"}],"termid":"FYPO:0006487"}


id: PBO:0038308
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation","termid":"PBO:0038308"}


id: PBO:0058661
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6789","termid":"PBO:0058661"}


id: PR:Q9P7K8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A transcription elongation factor SPT4 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03873","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcription elongation factor spt4 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC21C3.16c","secondary_identifiers":["UniProtKB:Q9P7K8"],"synonyms":[{"name":"Spom972h-SUPT4H1","type":"exact"},{"name":"chromatin elongation factor spt4 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P7K8"}


id: PBO:0045406
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DPPA3 pseudogene 8","termid":"PBO:0045406"}


id: GO:0072278
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the metanephric comma-shaped body is generated and organized. The metanephric comma-shaped body is the precursor structure to the metanephric S-shaped body that contributes to the morphogenesis of a nephron in the metanephros.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"comma-shaped body morphogenesis","termid":"GO:0072049"},{"relation_name":"part_of","term_name":"metanephric nephron morphogenesis","termid":"GO:0072273"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric comma-shaped body morphogenesis","termid":"GO:0072278"}


id: GO:0015900
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The directed movement of benomyl into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Benomyl, methyl 1-(butylcarbamoyl)-2-benzimidazolecarbamate, is a systemic agricultural fungicide used for control of certain fungal diseases of stone fruit.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete benomyl transport (obsolete GO:0015900)","termid":"GO:0015900"}


id: PBO:0075474
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"spermatogenesis associated 25","termid":"PBO:0075474"}


id: PBO:0011061
data:
  {"annotation_feature_type":"gene","cv_name":"feature_relationshipprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"approved_timestamp","termid":"PBO:0011061"}


id: RO:0009002
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"\\\"has substance removed\\\" is a relation existing between two physical entities in which the first entity has had the second entity (a substance) removed from it at some point in time.","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_substance_removed","termid":"RO:0009002"}


id: GO:0046207
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of trypanothione (N1,N6,-bis(glutathionyl)spermidine), an essential redox intermediate in intracellular thiol redox regulation which also plays a role in protecting against oxidative stress.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"trypanothione metabolic process","termid":"GO:0046206"},{"relation_name":"is_a","term_name":"glutathione derivative catabolic process","termid":"GO:1901686"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006790"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006790"],"is_obsolete":false,"name":"trypanothione catabolic process","synonyms":[{"name":"trypanothione breakdown","type":"exact"},{"name":"trypanothione catabolism","type":"exact"},{"name":"trypanothione degradation","type":"exact"}],"termid":"GO:0046207"}


id: GO:0036006
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a macrophage colony-stimulating factor stimulus.","definition_xrefs":["PMID:14687666","GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to macrophage colony-stimulating factor","termid":"GO:0036005"},{"relation_name":"is_a","term_name":"cellular response to cytokine stimulus","termid":"GO:0071345"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"cellular response to macrophage colony-stimulating factor stimulus","synonyms":[{"name":"cellular response to M-CSF stimulus","type":"exact"},{"name":"cellular response to macrophage colony-stimulating factor","type":"exact"}],"termid":"GO:0036006"}


id: PR:O74846
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An exocyst complex component 3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO04224"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exocyst complex component sec6 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1235.10c","secondary_identifiers":["UniProtKB:O74846"],"synonyms":[{"name":"Spom972h-EXOC3","type":"exact"}],"termid":"PR:O74846"}


id: PBO:0086193
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein similar to the human peptidyl-tRNA hydrolase gene ICT1; associates with mitochondrial large subunit; may function in translation termination; YOL114C is not an essential gene","termid":"PBO:0086193"}


id: FYPO:0003836
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of RNA polymerase II carboxy-terminal domain kinase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein kinase activity","termid":"FYPO:0001382"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000654","FYPO:0000661","FYPO:0000707","FYPO:0000652","FYPO:0001985"],"is_obsolete":false,"name":"decreased RNA polymerase II carboxy-terminal domain kinase activity","synonyms":[{"name":"reduced RNA polymerase II carboxy-terminal domain kinase activity","type":"exact"}],"termid":"FYPO:0003836"}


id: MONDO:1011957
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"musculoskeletal system disorder, non-human animal","termid":"MONDO:1011335"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hypochondroplastic dwarfism, non-human animal","secondary_identifiers":["OMIA:001296"],"termid":"MONDO:1011957","xrefs":{"Monarch":{"xref_id":"1011957"}}}


id: SO:0000997
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A portion of a gene that is not the complete gene.","direct_ancestors":[{"relation_name":"has_quality","term_name":"fragmentary","termid":"SO:0000731"},{"relation_name":"is_a","term_name":"gene_component_region","termid":"SO:0000842"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gene_fragment","synonyms":[{"name":"gene fragment","type":"exact"}],"termid":"SO:0000997"}


id: MONDO:0013687
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autosomal recessive cerebellar ataxia-epilepsy-intellectual disability syndrome due to WWOX deficiency is a rare autosomal recessive cerebellar ataxia-epilepsy-intellectual disability syndrome characterized by early-childhood onset of cerebellar ataxia associated with generalized tonic-clonic epilepsy and psychomotor development delay, dysarthria, gaze-evoked nystagmus and learning disability. Other features in some patients include upper motor neuron signs with leg spasticity and extensor plantar responses, and mild cerebellar atrophy on brain MRI.","definition_xrefs":["Orphanet:284282"],"direct_ancestors":[{"relation_name":"is_a","term_name":"autosomal recessive cerebellar ataxia - epilepsy - intellectual disability syndrome","termid":"MONDO:0018446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0005027","MONDO:0006025","MONDO:0005559"],"is_obsolete":false,"name":"autosomal recessive spinocerebellar ataxia 12","secondary_identifiers":["GARD:17313","UMLS:C3280452","DOID:0080060","OMIM:614322","MEDGEN:482082"],"synonyms":[{"name":"SCAR12","type":"exact"},{"name":"WWOX autosomal recessive cerebellar ataxia - epilepsy - intellectual disability syndrome","type":"exact"},{"name":"WWOX autosomal recessive cerebellar ataxia-epilepsy-intellectual disability syndrome","type":"exact"},{"name":"autosomal recessive cerebellar ataxia - epilepsy - intellectual disability syndrome caused by mutation in WWOX","type":"exact"},{"name":"autosomal recessive cerebellar ataxia - epilepsy - intellectual disability syndrome due to WWOX deficiency","type":"related"},{"name":"autosomal recessive cerebellar ataxia-epilepsy-intellectual disability syndrome caused by mutation in WWOX","type":"exact"},{"name":"autosomal recessive spinocerebellar ataxia 12","type":"exact"},{"name":"autosomal recessive spinocerebellar ataxia type 12","type":"exact"},{"name":"spinocerebellar ataxia with intellectual disability and epilepsy","type":"related"},{"name":"spinocerebellar ataxia with mental retardation and epilepsy","type":"related"},{"name":"spinocerebellar ataxia, autosomal recessive 12","type":"related"},{"name":"spinocerebellar ataxia, autosomal recessive type 12","type":"exact"}],"termid":"MONDO:0013687","xrefs":{"Monarch":{"xref_id":"0013687"}}}


id: MOD:01293
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-asparagine residue to L-aspartic acid with one (18)O.","definition_xrefs":["PubMed:8382902","Unimod:366#N","OMSSA:139"],"direct_ancestors":[{"relation_name":"derives_from","term_name":"deamidated L-asparagine","termid":"MOD:00684"},{"relation_name":"is_a","term_name":"1x(18)O labeled deamidated residue","termid":"MOD:00852"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1x(18)O labeled deamidated L-asparagine","synonyms":[{"name":"Deamidated:18O(1)","type":"related"},{"name":"Deamidation in presence of O18","type":"related"},{"name":"oxy18","type":"exact"}],"termid":"MOD:01293"}


id: GO:0032682
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of chemokine production.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cytokine production","termid":"GO:0001818"},{"relation_name":"is_a","term_name":"regulation of chemokine production","termid":"GO:0032642"},{"relation_name":"negatively_regulates","term_name":"chemokine production","termid":"GO:0032602"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"negative regulation of chemokine production","secondary_identifiers":["GO:0045079","GO:0090198"],"synonyms":[{"name":"down regulation of chemokine production","type":"exact"},{"name":"down-regulation of chemokine production","type":"exact"},{"name":"downregulation of chemokine production","type":"exact"},{"name":"inhibition of chemokine production","type":"narrow"},{"name":"negative regulation of chemokine biosynthetic process","type":"narrow"},{"name":"negative regulation of chemokine secretion","type":"narrow"}],"termid":"GO:0032682"}


id: PBO:0083844
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Exopolyphosphatase; hydrolyzes inorganic polyphosphate (poly P) into Pi residues; located in the cytosol, plasma membrane, and mitochondrial matrix","termid":"PBO:0083844"}


id: MONDO:0006323
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A group of testicular cancers that begin in the germ cells (cells that give rise to sperm). Nonseminomas are identified by the type of cell in which they begin and include embryonal carcinoma, teratoma, choriocarcinoma, and yolk sac carcinoma.","definition_xrefs":["EFO:1000401"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neoplasm","termid":"MONDO:0005070"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non-seminomatous lesion","secondary_identifiers":["MEDGEN:233785","UMLS:C1335059"],"termid":"MONDO:0006323","xrefs":{"Monarch":{"xref_id":"0006323"}}}


id: GO:0004019
data:
  {"annotated_genes":["SJAG_00044"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[80767],"is_not":false,"summary":null,"term":"GO:0004019"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-aspartate + GTP + IMP = N(6)-(1,2-dicarboxyethyl)-AMP + GDP + 3 H+ + phosphate.","definition_xrefs":["EC:6.3.4.4","RHEA:15753"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ligase activity, forming carbon-nitrogen bonds","termid":"GO:0016879"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00044":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016874"],"is_obsolete":false,"name":"adenylosuccinate synthase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["KEGG_REACTION:R01135","Reactome:R-HSA-111524","MetaCyc:ADENYLOSUCCINATE-SYNTHASE-RXN"],"synonyms":[{"name":"IMP--aspartate ligase activity","type":"related"},{"name":"IMP:L-aspartate ligase (GDP-forming)","type":"related"},{"name":"adenylosuccinate synthetase activity","type":"related"},{"name":"succino-AMP synthetase activity","type":"related"},{"name":"succinoadenylic kinosynthetase activity","type":"related"}],"termid":"GO:0004019","terms_by_termid":{"GO:0004019":null}}


id: MONDO:0859254
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hepatorenocardiac degenerative fibrosis","secondary_identifiers":["UMLS:C5676996","MEDGEN:1808950","OMIM:619902"],"termid":"MONDO:0859254","xrefs":{"Monarch":{"xref_id":"0859254"}}}


id: MONDO:0006461
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete thyroid gland carcinoma (obsolete MONDO:0006461)","termid":"MONDO:0006461","xrefs":{"Monarch":{"xref_id":"0006461"}}}


id: GO:0102341
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: (R)-3-hydroxylignoceroyl-CoA + NADP = 3-oxotetracosanoyl-CoA + NADPH + H+.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 3-oxo-lignoceroyl-CoA reductase activity (obsolete GO:0102341)","termid":"GO:0102341"}


id: PBO:0063482
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PDK1 and ITGA6 antisense RNA 1","termid":"PBO:0063482"}


id: PBO:0087419
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit 8 of ubiquinol cytochrome-c reductase (Complex III); Complex III is a component of the mitochondrial inner membrane electron transport chain; oriented facing the intermembrane space; expression is regulated by Abf1p and Cpf1p","termid":"PBO:0087419"}


id: PBO:0049907
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HESX homeobox 1","termid":"PBO:0049907"}


id: PR:O94598
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sec5 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94598"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exocyst complex component sec5 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC622.10c","synonyms":[{"name":"Spom972h-sec5","type":"exact"}],"termid":"PR:O94598"}


id: MONDO:0012135
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"restless legs syndrome, susceptibility to","termid":"MONDO:0100170"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"restless legs syndrome, susceptibility to, 2","secondary_identifiers":["MEDGEN:324722","OMIM:608831","UMLS:C1837285"],"synonyms":[{"name":"RLS2","type":"exact"},{"name":"restless legs syndrome 2","type":"exact"},{"name":"restless legs syndrome, susceptibility to, 2","type":"exact"}],"termid":"MONDO:0012135","xrefs":{"Monarch":{"xref_id":"0012135"}}}


id: MONDO:0008385
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rhiny","secondary_identifiers":["OMIM:180360","UMLS:C1867222","MEDGEN:401188","MESH:C566708"],"synonyms":[{"name":"craniorhiny","type":"related"},{"name":"rhiny","type":"exact"}],"termid":"MONDO:0008385","xrefs":{"Monarch":{"xref_id":"0008385"}}}


id: PBO:0053313
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA, regulator of reprogramming","termid":"PBO:0053313"}


id: GO:0016218
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of a multistep reaction that produce polyketides through decarboxylative condensation of carboxylic acids. The key chain-building reaction, a C-N bond-forming reaction, involves the generation of the characteristic peptide bond by nucleophilic attack of the amino group of an amino-acyl donor unit covalently bound to a downstream peptidyl carrier protein module (amino acyl-S-PCP) on the acyl group of an upstream electrophilic acyl- or peptidyl acyl-S-PCP chain, catalyzed by a condensation (C) domain. Supplementing these core chain-elongation domains are variable numbers of auxiliary domains that are responsible for modification of the growing polypeptide chain by a small set of iterated reactions including epimerization, N-methylation, and heterocyclization.","definition_xrefs":["PMID:10631508"],"direct_ancestors":[{"relation_name":"is_a","term_name":"catalytic activity","termid":"GO:0003824"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824"],"is_obsolete":false,"name":"polyketide synthase activity","synonyms":[{"name":"PKS activity","type":"related"}],"termid":"GO:0016218"}


id: PBO:0086411
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative GPI-anchored aspartic protease; member of the yapsin family of proteases involved in cell wall growth and maintenance; located in the cytoplasm and endoplasmic reticulum","termid":"PBO:0086411"}


id: MONDO:1011069
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Urolithiasis that occurs in Javan langur.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"urolithiasis, non-human animal","termid":"MONDO:1010267"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"urolithiasis, Javan langur","secondary_identifiers":["OMIA:001033-222416"],"termid":"MONDO:1011069","xrefs":{"Monarch":{"xref_id":"1011069"}}}


id: GO:0052093
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The assembly of a symbiotic cellular or anatomical structure for the purpose of obtaining nutrients from its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"direct_ancestors":[{"relation_name":"is_a","term_name":"formation of structure involved in a symbiotic process","termid":"GO:0044111"},{"relation_name":"part_of","term_name":"acquisition of nutrients from host","termid":"GO:0044002"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"formation of specialized structure for nutrient acquisition","synonyms":[{"name":"formation by organism of specialized structure for nutrient acquisition from host","type":"exact"},{"name":"formation by symbiont of specialized structure for nutrient acquisition from host","type":"exact"},{"name":"formation of specialized structure for nutrient acquisition from host","type":"exact"}],"termid":"GO:0052093"}


id: MONDO:0030071
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retinitis pigmentosa 89","secondary_identifiers":["OMIM:618955","MEDGEN:1710499","UMLS:C5394552","DOID:0112146"],"synonyms":[{"name":"RETINITIS PIGMENTOSA 89","type":"exact"},{"name":"RP89","type":"exact"},{"name":"retinitis pigmentosa 89","type":"exact"}],"termid":"MONDO:0030071","xrefs":{"Monarch":{"xref_id":"0030071"}}}


id: GO:0039701
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of the viral genome or a viral particle towards the cell periphery using host microtubules. Mostly used by viruses that replicate their genome near or in the nucleus to allows newly assembled viral progeny to reach the plasma membrane.","definition_xrefs":["VZ:1816","UniProtKB-KW:KW-1189"],"direct_ancestors":[{"relation_name":"is_a","term_name":"microtubule-dependent intracellular transport of viral material","termid":"GO:0075519"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"microtubule-dependent intracellular transport of viral material towards cell periphery","termid":"GO:0039701"}


id: PBO:0062872
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"OTU deubiquitinase 7A","termid":"PBO:0062872"}


id: GO:0071971
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form an extracellular vesicular exosome, a membrane-bounded vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Exosomes are defined by their size, which generally ranges from 30 nm to 100 nm.","definition_xrefs":["GOC:mah","GOC:tfm","PMID:19442504","PMID:27462458"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vesicle organization","termid":"GO:0016050"},{"relation_name":"is_a","term_name":"organelle assembly","termid":"GO:0070925"},{"relation_name":"part_of","term_name":"extracellular exosome biogenesis","termid":"GO:0097734"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"extracellular exosome assembly","synonyms":[{"name":"extracellular vesicular exosome assembly","type":"exact"}],"termid":"GO:0071971"}


id: GO:0061680
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The Entner-Doudoroff pathway that proceeds through a D-gluconate intermediate and yields pyruvate and D-glyceraldehyde.","definition_xrefs":["GOC:dph","MetaCyc:NPGLUCAT-PWY","PMID:12921536"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-phosphorylated glucose catabolic process","termid":"GO:0019595"},{"relation_name":"is_a","term_name":"Entner-Doudoroff pathway through gluconate","termid":"GO:0061679"},{"relation_name":"is_a","term_name":"glucose catabolic process to pyruvate","termid":"GO:0061718"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0005975"],"is_obsolete":false,"name":"Entner-Doudoroff pathway through gluconate to D-glyceraldehyde","termid":"GO:0061680"}


id: GO:0035727
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to lysophosphatidic acid (LPA), a phospholipid derivative that acts as a potent mitogen due to its activation of high-affinity G protein-coupled receptors.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phospholipid binding","termid":"GO:0005543"},{"relation_name":"is_a","term_name":"anion binding","termid":"GO:0043168"},{"relation_name":"is_a","term_name":"carbohydrate derivative binding","termid":"GO:0097367"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0008289"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0008289","GO:0003674","GO:0005488"],"is_obsolete":false,"name":"lysophosphatidic acid binding","synonyms":[{"name":"LPA binding","type":"exact"}],"termid":"GO:0035727"}


id: PBO:0034129
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-ubiquitously_expresses","termid":"PBO:0034129"}


id: FYPO:0003377
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell during a cellular response to nitrosative stress is lower than normal. Total RNA or a specific RNA may be affected. Nitrosative stress often results from exposure to high levels of nitric oxide (NO) or the highly reactive oxidant peroxynitrite, which is produced following interaction of NO with superoxide anions.","definition_xrefs":["GO:0071500","PMID:20204527","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased RNA level during vegetative growth","termid":"FYPO:0001117"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0006551","FYPO:0001985"],"is_obsolete":false,"name":"decreased RNA level during cellular response to nitrosative stress","synonyms":[{"name":"decreased RNA accumulation during cellular response to nitrosative stress","type":"related"},{"name":"decreased RNA level during cellular response to nitrosative stress during mitotic cell cycle","type":"related"},{"name":"decreased RNA level during cellular response to nitrosative stress during vegetative growth","type":"exact"},{"name":"decreased mRNA level during cellular response to nitrosative stress","type":"narrow"},{"name":"decreased transcript level during cellular response to nitrosative stress","type":"exact"},{"name":"reduced RNA level during cellular response to nitrosative stress","type":"exact"}],"termid":"FYPO:0003377"}


id: GO:1905261
data:
  {"annotated_genes":["SJAG_00100","SJAG_03048","SJAG_03720"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[110320,104295],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1905263"},{"annotations":[118237],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0062209"}]},"cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of meiotic DNA double-strand break formation involved in reciprocal meiotic recombination.","definition_xrefs":["PMID:26653857","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of meiotic DNA double-strand break formation","termid":"GO:1903341"},{"relation_name":"part_of","term_name":"reciprocal meiotic recombination","termid":"GO:0007131"},{"relation_name":"regulates","term_name":"meiotic DNA double-strand break formation involved in reciprocal meiotic recombination","termid":"GO:0010780"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00100":null,"SJAG_03048":null,"SJAG_03720":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006310"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0140013"}],"interesting_parent_ids":["GO:0007049","GO:0008150","GO:0006259","GO:0140013","GO:0006310"],"is_obsolete":false,"name":"regulation of meiotic DNA double-strand break formation involved in reciprocal meiotic recombination","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:1905261","terms_by_termid":{"GO:0062209":null,"GO:1905263":null}}


id: PBO:0089012
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alcohol dehydrogenase (unknown specificity)","termid":"PBO:0089012"}


id: PBO:0088262
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase activating protein","termid":"PBO:0088262"}


id: MONDO:0007414
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Gorham-Stout disease (GSD) is a rare disease of massive osteolysis associated with proliferation and dilation of lymphatic vessels. GSD may affect any bone in the body and can be monostotic or polyostotic. Symptoms at presentation are dependent upon the location(s) of the disease; the most common symptom is localized pain. The disease may be discovered after a pathological fracture.","definition_xrefs":["Orphanet:73"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lymphangioma","termid":"MONDO:0002013"},{"relation_name":"is_a","term_name":"disappearing bone disease","termid":"MONDO:0003157"},{"relation_name":"is_a","term_name":"rheumatic disorder","termid":"MONDO:0005554"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"Gorham-Stout disease","secondary_identifiers":["NANDO:1200880","GARD:6542","ICD9:733.99","MedDRA:10071283","UMLS:C0029438","OMIM:123880","NANDO:1200878","icd11.foundation:1318015458","MEDGEN:45248","NORD:1200","SCTID:1515008"],"synonyms":[{"name":"Gorham disease","type":"exact"},{"name":"Gorham syndrome","type":"exact"},{"name":"Gorham-Stout disease","type":"exact"},{"name":"cystic angiomatosis of bone diffuse","type":"related"},{"name":"cystic angiomatosis of bone, diffuse","type":"related"},{"name":"idiopathic massive osteolysis","type":"exact"},{"name":"osteolysis massive","type":"related"},{"name":"osteolysis, massive","type":"related"},{"name":"progressive massive osteolysis","type":"exact"},{"name":"vanishing bone disease","type":"exact"}],"termid":"MONDO:0007414","xrefs":{"Monarch":{"xref_id":"0007414"}}}


id: PBO:0039077
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AGPAT4 intronic transcript 1","termid":"PBO:0039077"}


id: GO:0003350
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the pulmonary myocardium over time, from its initial formation to the mature structure. The pulmonary myocardium is the myocardial tissue present in the pulmonary vein.","definition_xrefs":["GOC:dph","PMID:17638577"],"direct_ancestors":[{"relation_name":"is_a","term_name":"striated muscle tissue development","termid":"GO:0014706"},{"relation_name":"part_of","term_name":"venous blood vessel development","termid":"GO:0060841"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"pulmonary myocardium development","termid":"GO:0003350"}


id: FYPO:0005376
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which proteolysis is abnormal. Proteolysis is the hydrolysis of one or more peptide bonds within a protein.","definition_xrefs":["GO:0006508","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein metabolic process","termid":"FYPO:0002274"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0002274","FYPO:0005447"],"is_obsolete":false,"name":"abnormal proteolysis","synonyms":[{"name":"abnormal peptidolysis","type":"exact"},{"name":"abnormal protein cleavage","type":"narrow"}],"termid":"FYPO:0005376"}


id: FYPO:0002159
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of 1,3-beta-D-glucan synthase activity is decreased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased glucosyltransferase activity","termid":"FYPO:0001088"},{"relation_name":"is_a","term_name":"abnormal 1,3-beta-D-glucan synthase activity","termid":"FYPO:0001967"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000707","FYPO:0000654","FYPO:0000652","FYPO:0000661"],"is_obsolete":false,"name":"decreased 1,3-beta-D-glucan synthase activity","synonyms":[{"name":"reduced 1,3-beta-D-glucan synthase activity","type":"exact"}],"termid":"FYPO:0002159"}


id: PBO:0061363
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleophosmin 1 pseudogene 23","termid":"PBO:0061363"}


id: PBO:0082497
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Catalytic subunit of adoMet-dependent tRNA methyltransferase complex; required for the methylation of the guanosine nucleotide at position 10 (m2G10) in tRNAs; contains a THUMP domain and a methyltransferase domain; another complex member is Trm112p","termid":"PBO:0082497"}


id: PBO:0062561
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 10 subfamily AA member 1 pseudogene","termid":"PBO:0062561"}


id: PR:O13711
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPAC14C4.04 gene.","definition_xrefs":["UniProtKB:O13711","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized protein C14C4.04 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC14C4.04","synonyms":[{"name":"Spom972h-SPAC14C4.04","type":"exact"}],"termid":"PR:O13711"}


id: GO:0072052
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which relatively unspecialized cells acquire specialized structural and/or functional features that characterize the juxtaglomerulus cells of the kidney as it progresses from its formation to the mature state.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation involved in kidney development","termid":"GO:0061005"},{"relation_name":"part_of","term_name":"juxtaglomerular apparatus development","termid":"GO:0072051"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"juxtaglomerulus cell differentiation","termid":"GO:0072052"}


id: RO:0003002
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"Holds between protein a (a transcription factor) and DNA element b if and only if a diminishes the process of transcription of b.","direct_ancestors":[{"relation_name":"is_a","term_name":"activity_directly_negatively_regulates_activity_of","termid":"RO:0002449"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"represses_expression_of","termid":"RO:0003002"}


id: MONDO:0011132
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A severe combined immunodeficiency characterized by congenital alopecia, severe T-cell immunodeficiency, and ridging, pitting or curving of all nails that has material basis in homozygous mutation in the FOXN1 gene on chromosome 17q11-q12.","definition_xrefs":["PMID:10206641","PMID:8911612","DOID:0060769"],"direct_ancestors":[{"relation_name":"is_a","term_name":"severe combined immunodeficiency","termid":"MONDO:0015974"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"T-cell immunodeficiency, congenital alopecia, and nail dystrophy","secondary_identifiers":["Orphanet:169095","GARD:4358","MEDGEN:355713","OMIM:601705","MESH:C536781","UMLS:C1866426","SCTID:720345008"],"synonyms":[{"name":"FOXN1 deficiency","type":"exact"},{"name":"Pignata Guarino syndrome","type":"related"},{"name":"T-cell immunodeficiency, congenital alopecia and nail dystrophy","type":"related"},{"name":"T-cell immunodeficiency, congenital alopecia, and nail dystrophy","type":"exact"},{"name":"alopecia immunodeficiency","type":"exact"},{"name":"alymphoid cystic thymic dysgenesis","type":"exact"},{"name":"congenital alopecia and nail dystrophy associated with severe functional T-cell immunodeficiency","type":"related"},{"name":"severe T-cell immunodeficiency-congenital alopecia-nail dystrophy syndrome","type":"exact"},{"name":"winged helix deficiency","type":"exact"}],"termid":"MONDO:0011132","xrefs":{"Monarch":{"xref_id":"0011132"}}}


id: GO:0050161
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: oxalate + succinyl-CoA = oxalyl-CoA + succinate.","definition_xrefs":["EC:2.8.3.2","RHEA:23588"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CoA-transferase activity","termid":"GO:0008410"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016782"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0016782"],"is_obsolete":false,"name":"succinyl-CoA:oxalate CoA-transferase","secondary_identifiers":["MetaCyc:OXALATE-COA-TRANSFERASE-RXN","KEGG_REACTION:R01559"],"synonyms":[{"name":"oxalate CoA-transferase activity","type":"related"},{"name":"oxalate coenzyme A-transferase activity","type":"related"},{"name":"succinyl-CoA:oxalate CoA-transferase activity","type":"related"},{"name":"succinyl-beta-ketoacyl-CoA transferase activity","type":"related"}],"termid":"GO:0050161"}


id: PBO:0076190
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO1 pseudogene 5","termid":"PBO:0076190"}


id: GO:0050291
data:
  {"annotated_genes":["SJAG_02842","SJAG_02085"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[79899,80890],"is_not":false,"summary":null,"term":"GO:0050291"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: acyl-CoA + sphingosine = CoA + N-acylsphingosine.","definition_xrefs":["MetaCyc:SPHINGOSINE-N-ACYLTRANSFERASE-RXN","EC:2.3.1.24","PMID:12069845"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-acyltransferase activity","termid":"GO:0016410"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02085":null,"SJAG_02842":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0016746","GO:0003674"],"is_obsolete":false,"name":"sphingosine N-acyltransferase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["RHEA:23768","Reactome:R-HSA-428185"],"synonyms":[{"name":"acyl-CoA:sphingosine N-acyltransferase activity","type":"related"},{"name":"ceramide synthase activity","type":"exact"},{"name":"ceramide synthetase activity","type":"related"},{"name":"dihydroceramide synthase activity","type":"exact"},{"name":"sphingosine acyltransferase activity","type":"related"}],"termid":"GO:0050291","terms_by_termid":{"GO:0050291":null}}


id: GO:0035827
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Enables the transfer of rubidium ions (Rb+) from one side of a membrane to the other.","definition_xrefs":["GOC:yaf"],"gene_count":0,"genotype_count":0,"name":"obsolete rubidium ion transmembrane transporter activity (obsolete GO:0035827)","synonyms":[{"name":"Rb+ transmembrane transporter activity","type":"exact"},{"name":"rubidium cation transmembrane transporter activity","type":"exact"},{"name":"rubidium transmembrane transporter activity","type":"related"}],"termid":"GO:0035827"}


id: PBO:0082502
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Catalytic subunit of DNA polymerase (II) epsilon; a chromosomal DNA replication polymerase that exhibits processivity and proofreading exonuclease activity; participates in leading-strand synthesis during DNA replication; also involved in DNA synthesis during DNA repair; interacts extensively with Mrc1p","termid":"PBO:0082502"}


id: GO:0140323
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: anion(in) + solute(out) = anion(out) + solute(in).","definition_xrefs":["GOC:pg"],"gene_count":0,"genotype_count":0,"name":"obsolete solute:monoatomic anion antiporter activity (obsolete GO:0140323)","synonyms":[{"name":"solute:anion antiporter activity","type":"exact"}],"termid":"GO:0140323"}


id: PBO:0065592
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prothymosin alpha pseudogene 8","termid":"PBO:0065592"}


id: MONDO:0001497
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"male reproductive system disorder","termid":"MONDO:0003150"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"male genital organ vascular disease","secondary_identifiers":["DOID:12335","MEDGEN:508280","SCTID:198057005","ICD9:608.83","UMLS:C0042374"],"synonyms":[{"name":"vascular disorder of male genital organs","type":"exact"}],"termid":"MONDO:0001497","xrefs":{"Monarch":{"xref_id":"0001497"}}}


id: GO:0002114
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with interleukin-33 and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity.","definition_xrefs":["GOC:hjd","GOC:signaling"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokine receptor activity","termid":"GO:0004896"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"interleukin-33 receptor activity","synonyms":[{"name":"IL-33 receptor activity","type":"exact"},{"name":"IL-33R","type":"exact"}],"termid":"GO:0002114"}


id: GO:0071751
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A polymeric IgA immunoglobulin complex that is complexed with one chain of secretory component (SC). Polymeric IgA is present in mucosal areas, having been transported via a transcytosis mechanism in mucosal epithelial cells relying on the polymeric Ig receptor, a portion of which then remains bound to the polymeric IgA as secretory component.","definition_xrefs":["ISBN:0781765196","GOC:add","PMID:16362985"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polymeric IgA immunoglobulin complex","termid":"GO:0071749"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005576"}],"interesting_parent_ids":["GO:0005576","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"secretory IgA immunoglobulin complex","synonyms":[{"name":"sIgA antibody","type":"exact"},{"name":"sIgA1 antibody","type":"narrow"},{"name":"secretory IgA antibody","type":"exact"}],"termid":"GO:0071751"}


id: GO:2000776
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any histone H4 acetylation that is involved in a response to DNA damage stimulus.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete histone H4 acetylation involved in response to DNA damage stimulus (obsolete GO:2000776)","synonyms":[{"name":"histone H4 acetylation of DNA damage response","type":"exact"},{"name":"histone H4 acetylation of cellular DNA damage response","type":"exact"},{"name":"histone H4 acetylation of cellular response to DNA damage stimulus","type":"exact"},{"name":"histone H4 acetylation of response to DNA damage stimulus","type":"exact"},{"name":"histone H4 acetylation of response to genotoxic stress","type":"exact"}],"termid":"GO:2000776"}


id: PBO:0005753
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"40S ribosomal protein S2 (predicted)","termid":"PBO:0005753"}


id: PBO:0030696
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_glutathione-disulfide_reductase_activity","termid":"PBO:0030696"}


id: PBO:0042252
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centriole, cilia and spindle associated protein","termid":"PBO:0042252"}


id: PBO:0076550
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TatD DNase domain containing 2 pseudogene 2","termid":"PBO:0076550"}


id: PBO:0057045
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 134","termid":"PBO:0057045"}


id: MONDO:0036482
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"retinitis pigmentosa","termid":"MONDO:0019200"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0004736"}],"interesting_parent_ids":["MONDO:0005328","MONDO:0004736","MONDO:0005066"],"is_obsolete":false,"name":"retinitis pigmentosa 81","secondary_identifiers":["OMIM:617871","UMLS:C4693443","DOID:0080292","MEDGEN:1637738"],"synonyms":[{"name":"RP81","type":"related"},{"name":"retinitis pigmentosa 81","type":"exact"}],"termid":"MONDO:0036482","xrefs":{"Monarch":{"xref_id":"0036482"}}}


id: GO:0072119
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that contributes to the act of creating the structural organization of the head kidney. This process pertains to the physical shaping of a rudimentary structure. The head kidney is a pronephros that consists of fused bilateral lobes located in the anterior part of the kidney.","definition_xrefs":["GOC:mtg_kidney_jan10","ZFA:0000669"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pronephros structural organization","termid":"GO:0072118"},{"relation_name":"part_of","term_name":"head kidney morphogenesis","termid":"GO:0072115"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"head kidney structural organization","synonyms":[{"name":"head kidney structural organisation","type":"exact"}],"termid":"GO:0072119"}


id: MONDO:0020783
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"angioosteohypertrophic syndrome","termid":"MONDO:0007864"},{"relation_name":"is_a","term_name":"capillary malformation-arteriovenous malformation syndrome","termid":"MONDO:0012016"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"capillary malformation-arteriovenous malformation 1","secondary_identifiers":["MEDGEN:1648501","Orphanet:90307","UMLS:C4747394","OMIM:608355","GARD:9787","ICD9:759.6","SCTID:234143003","OMIM:608354"],"synonyms":[{"name":"CAPILLARY MALFORMATION-ARTERIOVENOUS MALFORMATION 1","type":"exact"},{"name":"CMAVM1","type":"exact"},{"name":"Capillary Malformation-Arteriovenous Malformation","type":"broad"},{"name":"PKWS","type":"exact"},{"name":"Parkes Weber syndrome","type":"exact"},{"name":"capillary malformation-arteriovenous malformation 1","type":"exact"}],"termid":"MONDO:0020783","xrefs":{"Monarch":{"xref_id":"0020783"}}}


id: PBO:0041639
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"calcium voltage-gated channel subunit alpha1 F","termid":"PBO:0041639"}


id: GO:1900927
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of L-threonine import into cell.","definition_xrefs":["GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of organic acid transport","termid":"GO:0032891"},{"relation_name":"is_a","term_name":"negative regulation of transmembrane transport","termid":"GO:0034763"},{"relation_name":"is_a","term_name":"negative regulation of amino acid transport","termid":"GO:0051956"},{"relation_name":"is_a","term_name":"regulation of L-threonine import across plasma membrane","termid":"GO:1900926"},{"relation_name":"negatively_regulates","term_name":"L-threonine import across plasma membrane","termid":"GO:1903807"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0055085"},{"rel_name":"negatively_regulates","termid":"GO:0006810"},{"rel_name":"negatively_regulates","termid":"GO:0055085"},{"rel_name":"regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0055085","GO:0006810","GO:0008150"],"is_obsolete":false,"name":"negative regulation of L-threonine import across plasma membrane","synonyms":[{"name":"down regulation of L-threonine import","type":"exact"},{"name":"down regulation of L-threonine uptake","type":"related"},{"name":"down-regulation of L-threonine import","type":"exact"},{"name":"down-regulation of L-threonine uptake","type":"related"},{"name":"downregulation of L-threonine import","type":"exact"},{"name":"downregulation of L-threonine uptake","type":"related"},{"name":"inhibition of L-threonine import","type":"narrow"},{"name":"inhibition of L-threonine uptake","type":"narrow"},{"name":"negative regulation of L-threonine uptake","type":"related"}],"termid":"GO:1900927"}


id: PBO:0073535
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SH3 domain containing kinase binding protein 1","termid":"PBO:0073535"}


id: PBO:0085625
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein involved in establishment of cell polarity and bud emergence; interacts with the Rho1p small GTP-binding protein and with the Rho-type GTPase Cdc42p; involved in maintenance of proper telomere length","termid":"PBO:0085625"}


id: PBO:0004753
data:
  {"annotation_feature_type":"gene","cv_name":"gene_ex","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptionally regulates mei2","termid":"PBO:0004753"}


id: FYPO:0004376
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which chromatin silencing at the silent mating-type cassettes is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal chromatin silencing at silent mating-type cassette","termid":"FYPO:0000156"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0000002","FYPO:0001985","FYPO:0006551"],"is_obsolete":false,"name":"increased chromatin silencing at silent mating-type cassette","synonyms":[{"name":"increased chromatin silencing at mating-type region heterochromatin","type":"exact"},{"name":"increased chromatin silencing at silent mating-type cassette during mitotic cell cycle","type":"related"},{"name":"increased chromatin silencing at silent mating-type cassette during vegetative growth","type":"exact"}],"termid":"FYPO:0004376"}


id: PBO:0082068
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3-methylbutanal reductase and NADPH-dependent methylglyoxal reductase; stress induced (osmotic, ionic, oxidative, heat shock and heavy metals); regulated by the HOG pathway; restores resistance to glycolaldehyde by coupling reduction of glycolaldehyde to ethylene glycol and oxidation of NADPH to NADP+; protein abundance increases in response to DNA replication stress; methylglyoxal reductase (NADPH-dependent) is also known as D-lactaldehyde dehydrogenase","termid":"PBO:0082068"}


id: PBO:0072104
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S13 pseudogene 2","termid":"PBO:0072104"}


id: PBO:0039181
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"A-kinase anchoring protein 11","termid":"PBO:0039181"}


id: PR:A9ZLL8
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- lsd90 gene.","definition_xrefs":["PRO:DNx","UniProtKB:A9ZLL8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein lsd90 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC16E9.16c","synonyms":[{"name":"90kDa large and small daughter protein (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-lsd90","type":"exact"}],"termid":"PR:A9ZLL8"}


id: PBO:0068686
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U4 small nuclear 67, pseudogene","termid":"PBO:0068686"}


id: GO:0047646
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: R-CHO + reduced FMN + O2 = R-COOH + FMN + H2O + light.","definition_xrefs":["MetaCyc:ALKANAL-MONOOXYGENASE-FMN-LINKED-RXN","EC:1.14.14.3"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen","termid":"GO:0016712"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"alkanal monooxygenase (FMN-linked) activity","secondary_identifiers":["RHEA:17181"],"synonyms":[{"name":"aldehyde monooxygenase activity","type":"broad"},{"name":"alkanal,reduced-FMN:oxygen oxidoreductase (1-hydroxylating, luminescing)","type":"related"},{"name":"bacterial luciferase activity","type":"related"},{"name":"vibrio fischeri luciferase activity","type":"related"}],"termid":"GO:0047646"}


id: PBO:0084807
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mitochondrial protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to mitochondria; YLR281C is not an essential gene","termid":"PBO:0084807"}


id: MOD:00844
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively substitutes atoms of particular common isotopes with atoms of or groups containing (18)O.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isotope labeled residue","termid":"MOD:00702"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"(18)O labeled residue","termid":"MOD:00844"}


id: PBO:0071119
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L21 pseudogene 121","termid":"PBO:0071119"}


id: MONDO:0013602
data:
  {"annotated_genes":["SJAG_01671"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87676],"is_not":false,"summary":null,"term":"MONDO:0013602"}]},"cv_name":"mondo","definition":"Any paraganglioma in which the cause of the disease is a mutation in the SDHA gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"paraganglioma","termid":"MONDO:0000448"},{"relation_name":"is_a","term_name":"central nervous system cancer","termid":"MONDO:0002714"},{"relation_name":"is_a","term_name":"adrenal gland cancer","termid":"MONDO:0002817"},{"relation_name":"is_a","term_name":"malignant urinary system neoplasm","termid":"MONDO:0006295"},{"relation_name":"is_a","term_name":"hereditary pheochromocytoma-paraganglioma","termid":"MONDO:0017366"},{"relation_name":"is_a","term_name":"peripheral nervous system cancer","termid":"MONDO:0021089"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01671":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"paragangliomas 5","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C3279992","MEDGEN:481622","OMIM:614165","GARD:15763"],"synonyms":[{"name":"PGL5","type":"related"},{"name":"SDHA paraganglioma","type":"exact"},{"name":"paraganglioma caused by mutation in SDHA","type":"exact"},{"name":"paragangliomas 5","type":"exact"},{"name":"paragangliomas type 5","type":"exact"}],"termid":"MONDO:0013602","terms_by_termid":{"MONDO:0013602":null},"xrefs":{"Monarch":{"xref_id":"0013602"}}}


id: MONDO:1011221
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Retinal detachment that occurs in dog.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"retinal detachment, non-human animal","termid":"MONDO:1010321"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"retinal detachment, dog","secondary_identifiers":["OMIA:000275-9615"],"termid":"MONDO:1011221","xrefs":{"Monarch":{"xref_id":"1011221"}}}


id: PATO:0000872
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000872 anxious (obsolete PATO:0000872)","termid":"PATO:0000872"}


id: PBO:0062757
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 52 subfamily N member 2","termid":"PBO:0062757"}


id: PBO:0029340
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_zinc","termid":"PBO:0029340"}


id: PR:O94397
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sgf73 gene.","definition_xrefs":["UniProtKB:O94397","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SAGA-associated factor 73 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC126.04c","synonyms":[{"name":"Spom972h-sgf73","type":"exact"}],"termid":"PR:O94397"}


id: GO:1905801
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of intraciliary retrograde transport.","definition_xrefs":["GOC:TermGenie","PMID:27930654","GO_REF:0000058"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of intracellular transport","termid":"GO:0032388"},{"relation_name":"is_a","term_name":"regulation of intraciliary retrograde transport","termid":"GO:1905799"},{"relation_name":"positively_regulates","term_name":"intraciliary retrograde transport","termid":"GO:0035721"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"positively_regulates","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810"],"is_obsolete":false,"name":"positive regulation of intraciliary retrograde transport","synonyms":[{"name":"activation of intraciliary retrograde transport","type":"narrow"},{"name":"activation of intraflagellar retrograde transport","type":"narrow"},{"name":"positive regulation of intraflagellar retrograde transport","type":"exact"},{"name":"up regulation of intraciliary retrograde transport","type":"exact"},{"name":"up regulation of intraflagellar retrograde transport","type":"exact"},{"name":"up-regulation of intraciliary retrograde transport","type":"exact"},{"name":"up-regulation of intraflagellar retrograde transport","type":"exact"},{"name":"upregulation of intraciliary retrograde transport","type":"exact"},{"name":"upregulation of intraflagellar retrograde transport","type":"exact"}],"termid":"GO:1905801"}


id: PBO:0004345
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HVA22/TB2/DP1 family protein","termid":"PBO:0004345"}


id: PBO:0072856
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"store-operated calcium entry associated regulatory factor","termid":"PBO:0072856"}


id: PBO:0059573
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"metallothionein 1X pseudogene 1","termid":"PBO:0059573"}


id: GO:1904233
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of aconitate hydratase activity.","definition_xrefs":["GOC:rl","GOC:BHF","GO_REF:0000059","PMID:18160053","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of aconitate hydratase activity (obsolete GO:1904233)","synonyms":[{"name":"down regulation of aconitase activity","type":"exact"},{"name":"down regulation of aconitate hydratase activity","type":"exact"},{"name":"down regulation of cis-aconitase activity","type":"exact"},{"name":"down regulation of citrate(isocitrate) hydro-lyase (cis-aconitate-forming)","type":"exact"},{"name":"down regulation of citrate(isocitrate) hydro-lyase activity","type":"exact"},{"name":"down-regulation of aconitase activity","type":"exact"},{"name":"down-regulation of aconitate hydratase activity","type":"exact"},{"name":"down-regulation of cis-aconitase activity","type":"exact"},{"name":"down-regulation of citrate(isocitrate) hydro-lyase (cis-aconitate-forming)","type":"exact"},{"name":"down-regulation of citrate(isocitrate) hydro-lyase activity","type":"exact"},{"name":"downregulation of aconitase activity","type":"exact"},{"name":"downregulation of aconitate hydratase activity","type":"exact"},{"name":"downregulation of cis-aconitase activity","type":"exact"},{"name":"downregulation of citrate(isocitrate) hydro-lyase (cis-aconitate-forming)","type":"exact"},{"name":"downregulation of citrate(isocitrate) hydro-lyase activity","type":"exact"},{"name":"inhibition of aconitase activity","type":"narrow"},{"name":"inhibition of aconitate hydratase activity","type":"narrow"},{"name":"inhibition of cis-aconitase activity","type":"narrow"},{"name":"inhibition of citrate(isocitrate) hydro-lyase (cis-aconitate-forming)","type":"narrow"},{"name":"inhibition of citrate(isocitrate) hydro-lyase activity","type":"narrow"},{"name":"negative regulation of aconitase activity","type":"exact"},{"name":"negative regulation of cis-aconitase activity","type":"exact"},{"name":"negative regulation of citrate(isocitrate) hydro-lyase (cis-aconitate-forming)","type":"exact"},{"name":"negative regulation of citrate(isocitrate) hydro-lyase activity","type":"exact"}],"termid":"GO:1904233"}


id: PBO:0073903
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 15 member 1","termid":"PBO:0073903"}


id: PBO:0071224
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L23a pseudogene 65","termid":"PBO:0071224"}


id: MONDO:0011597
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inherited susceptibility or predisposition to developing atopic dermatitis that is associated with variation in the region 20p.","definition_xrefs":["PMID:11279517","MONDO:patterns/inherited_susceptibility","DOID:0110099"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"excluded_subClassOf","term_name":"atopic eczema","termid":"MONDO:0004980"},{"relation_name":"is_a","term_name":"dermatitis, atopic, susceptibility to","termid":"MONDO:0100178"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dermatitis, atopic, 3","secondary_identifiers":["MESH:C565292","OMIM:605804","UMLS:C1853964","MEDGEN:344173"],"synonyms":[{"name":"ATOD3","type":"exact"},{"name":"atopic dermatitis 3","type":"exact"},{"name":"atopic dermatitis type 3","type":"exact"},{"name":"atopic dermatitis with asthma","type":"exact"},{"name":"dermatitis, ATOPIC, 3","type":"related"},{"name":"dermatitis, Atopic, with asthma","type":"related"},{"name":"dermatitis, atopic, susceptibility to, 3","type":"exact"}],"termid":"MONDO:0011597","xrefs":{"Monarch":{"xref_id":"0011597"}}}


id: GO:0046723
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The controlled release of malic acid, hydroxybutanedioic (hydroxysuccinic) acid, by a cell or a tissue.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"malate transport","termid":"GO:0015743"},{"relation_name":"is_a","term_name":"acid secretion","termid":"GO:0046717"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"malic acid secretion","synonyms":[{"name":"hydroxysuccinic acid secretion","type":"exact"},{"name":"malate secretion","type":"exact"}],"termid":"GO:0046723"}


id: PBO:0043908
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytokine receptor like factor 1","termid":"PBO:0043908"}


id: MONDO:0008064
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nasal bones, absence of","secondary_identifiers":["UMLS:C0339851","MEDGEN:90946","OMIM:161480","MESH:C562753"],"synonyms":[{"name":"nasal bones, absence of","type":"exact"}],"termid":"MONDO:0008064","xrefs":{"Monarch":{"xref_id":"0008064"}}}


id: FYPO:0004008
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which transcription of ribosomal DNA into ribosomal RNA occurs to a normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal transcription during vegetative growth","termid":"FYPO:0001855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0001312","FYPO:0000002","FYPO:0000294"],"is_obsolete":false,"name":"normal rRNA transcription","synonyms":[{"name":"normal rDNA transcription","type":"exact"},{"name":"normal rRNA transcription during mitotic cell cycle","type":"related"},{"name":"normal rRNA transcription during vegetative growth","type":"exact"},{"name":"normal ribosomal RNA transcription","type":"exact"}],"termid":"FYPO:0004008"}


id: PBO:0074983
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 114-25","termid":"PBO:0074983"}


id: MONDO:0000186
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete spondyloepimetaphyseal dysplasia with joint laxity (obsolete MONDO:0000186)","termid":"MONDO:0000186","xrefs":{"Monarch":{"xref_id":"0000186"}}}


id: MONDO:0010498
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"sterol biosynthesis disorder","termid":"MONDO:0019240"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002525"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0002525"],"is_obsolete":false,"name":"MEND syndrome","secondary_identifiers":["DOID:0111865","MEDGEN:905986","OMIM:300960","Orphanet:401973","UMLS:C4085243","GARD:17666"],"synonyms":[{"name":"MEND","type":"related"},{"name":"MEND syndrome","type":"exact"},{"name":"MEND syndrome, X-linked recessive","type":"exact"},{"name":"Male EBP disorder with neurologic defects","type":"related"},{"name":"Male EBP disorder with neurological defects","type":"exact"}],"termid":"MONDO:0010498","xrefs":{"Monarch":{"xref_id":"0010498"}}}


id: MONDO:0100096
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A disease caused by infection with severe acute respiratory syndrome coronavirus 2.","definition_xrefs":["MONDO:patterns/infectious_disease_by_agent"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Orthocoronavirinae infectious disease","termid":"MONDO:0020753"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"COVID-19","secondary_identifiers":["SCTID:840539006","UMLS:C5203670","MESH:C000657245","DOID:0080600","icd11.foundation:1730556128","MEDGEN:1699653","MESH:D000086382","ICD10CM:U07.1"],"synonyms":[{"name":"2019 novel coronavirus","type":"related"},{"name":"2019 novel coronavirus infection","type":"exact"},{"name":"2019-nCoV","type":"related"},{"name":"2019-nCoV infection","type":"exact"},{"name":"SARS-CoV-2","type":"related"},{"name":"SARS-coronavirus 2","type":"related"},{"name":"beta-CoV","type":"related"},{"name":"beta-CoVs","type":"related"},{"name":"betacoronavirus","type":"related"},{"name":"coronavirus disease 2019","type":"exact"},{"name":"severe acute respiratory syndrome coronavirus 2","type":"related"},{"name":"severe acute respiratory syndrome coronavirus 2 infectious disease","type":"exact"},{"name":"β-CoV","type":"related"},{"name":"β-CoVs","type":"related"},{"name":"β-coronavirus","type":"related"}],"termid":"MONDO:0100096","xrefs":{"Monarch":{"xref_id":"0100096"}}}


id: PBO:0040933
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCL2 interacting protein 3 pseudogene 4","termid":"PBO:0040933"}


id: GO:1903314
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of nitrogen cycle metabolic process.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","GOC:vw"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of metabolic process","termid":"GO:0019222"},{"relation_name":"regulates","term_name":"nitrogen cycle metabolic process","termid":"GO:0071941"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0071941"}],"interesting_parent_ids":["GO:0008150","GO:0071941"],"is_obsolete":false,"name":"regulation of nitrogen cycle metabolic process","termid":"GO:1903314"}


id: GO:0102976
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (2S)-versicolorone + NADP+ = 1'-hydroxyversicolorone + H+ + NADPH.","definition_xrefs":["RHEA:35699"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor","termid":"GO:0016616"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016491","GO:0003824"],"is_obsolete":false,"name":"versiconal reductase activity","secondary_identifiers":["MetaCyc:RXN-9491"],"termid":"GO:0102976"}


id: PBO:0043679
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coronin 6","termid":"PBO:0043679"}


id: PBO:0064598
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"POU class 2 homeobox 1","termid":"PBO:0064598"}


id: MONDO:0019526
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Erythema elevatum diutinum (EED) is a distinctive form of chronic cutaneous vasculitis, belonging to the group of the neutrophilic dermatoses.","definition_xrefs":["Orphanet:90000"],"direct_ancestors":[{"relation_name":"is_a","term_name":"immune complex mediated vasculitis","termid":"MONDO:0015491"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"erythema elevatum diutinum","secondary_identifiers":["UMLS:C0263398","MEDGEN:75517","DOID:0060567","ICD10CM:L95.1","MedDRA:10056968","icd11.foundation:754210950","GARD:8653","ICD9:695.89","SCTID:58872001","MESH:C535509"],"termid":"MONDO:0019526","xrefs":{"Monarch":{"xref_id":"0019526"}}}


id: PBO:0070864
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L14 pseudogene 2","termid":"PBO:0070864"}


id: PBO:0026675
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_mitotic_cell_cycle_regulation_during_cellular_response_to_methyl_methanesulfonate","termid":"PBO:0026675"}


id: MONDO:0000809
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A severe, rapidly fatal reaction occurring most commonly in children following an infectious illness. It is characterized by large, rapidly spreading skin hemorrhages, fever, or shock. Purpura fulminans often accompanies or is triggered by disseminated intravascular coagulation.","definition_xrefs":["MESH:D055665"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disseminated intravascular coagulation","termid":"MONDO:0001243"},{"relation_name":"is_a","term_name":"purpura","termid":"MONDO:0002610"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"purpura fulminans","secondary_identifiers":["UMLS:C0085650","SCTID:13507004","icd11.foundation:1293848111","DOID:0060538","MEDGEN:88448"],"synonyms":[{"name":"fibrinolytic purpura","type":"related"},{"name":"purpura gangrenosa","type":"exact"}],"termid":"MONDO:0000809","xrefs":{"Monarch":{"xref_id":"0000809"}}}


id: PBO:0044452
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytochrome P450 family 4 subfamily F member 31, pseudogene","termid":"PBO:0044452"}


id: MONDO:0019777
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Carpenter-Waziri syndrome (obsolete MONDO:0019777)","termid":"MONDO:0019777","xrefs":{"Monarch":{"xref_id":"0019777"}}}


id: GO:0099630
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process during which neurotransmitter receptors in the postsynaptic specialization membrane are recycled via the endosome. This cycle includes release from anchoring (trapping), diffusion in the synaptic membrane to the postsynaptic endocytic region, endocytosis, transport to the endosome, recycling in the endosome, transport back the synaptic membrane and subsequent trapping in the postsynaptic specialization membrane.","definition_xrefs":["PMID:18832033"],"direct_ancestors":[{"relation_name":"is_a","term_name":"establishment of localization in cell","termid":"GO:0051649"},{"relation_name":"is_a","term_name":"neurotransmitter receptor cycle","termid":"GO:0099627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"postsynaptic neurotransmitter receptor cycle","termid":"GO:0099630"}


id: MONDO:0015751
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Capra-DeMarco syndrome is characterized by sagittal craniosynostosis, hydrocephalus, Chiari I malformation and radioulnar synostosis. Other clinical findings include blepharophimosis, small low-set ears, hypoplastic philtrum, kidney malformation, and hypogenitalism.","definition_xrefs":["Orphanet:171839"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic craniosynostosis","termid":"MONDO:0015338"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"craniosynostosis-hydrocephalus-Arnold-Chiari malformation type I-radioulnar synostosis syndrome","secondary_identifiers":["GARD:20127","UMLS:C3267187","MEDGEN:923699","SCTID:720815000"],"synonyms":[{"name":"Berant syndrome","type":"exact"},{"name":"Capra-DeMarco syndrome","type":"exact"},{"name":"familial scaphocephaly-radioulnar synostosis syndrome","type":"exact"}],"termid":"MONDO:0015751","xrefs":{"Monarch":{"xref_id":"0015751"}}}


id: RO:0002330
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"holds between two entities when some genome-level process such as gene expression is involved. This includes transcriptional, spliceosomal events. These relations can be used between either macromolecule entities (such as regions of nucleic acid) or between their abstract informational counterparts.","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"genomically_related_to","termid":"RO:0002330"}


id: PBO:0084202
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HMG-CoA reductase; converts HMG-CoA to mevalonate, a rate-limiting step in sterol biosynthesis; one of two isozymes; overproduction induces assembly of peripheral ER membrane arrays and short nuclear-associated membrane stacks; forms foci at nuclear periphery upon DNA replication stress; HMG2 has a paralog, HMG1, that arose from the whole genome duplication; human homolog HMGCR can complement yeast hmg2 mutant","termid":"PBO:0084202"}


id: FYPO:0000199
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A DNA recombination phenotype observed in the vegetative growth phase of the life cycle in which the occurrence of long tract gene conversion is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased gene conversion during vegetative growth","termid":"FYPO:0005788"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0001320","FYPO:0000293","FYPO:0000002"],"is_obsolete":false,"name":"increased long tract gene conversion","synonyms":[{"name":"DNA recombination defects, long tract gene conversion, increased","type":"exact"},{"name":"increased long tract gene conversion during mitotic cell cycle","type":"related"},{"name":"increased long tract gene conversion during vegetative growth","type":"exact"}],"termid":"FYPO:0000199"}


id: GO:0031299
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: pyruvate + taurine = L-alanine + sulfoacetaldehyde.","definition_xrefs":["PMID:11082195","RHEA:10420"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016769"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674","GO:0016769"],"is_obsolete":false,"name":"taurine-pyruvate aminotransferase activity","secondary_identifiers":["MetaCyc:TAURINE-AMINOTRANSFERASE-RXN","EC:2.6.1.77","KEGG_REACTION:R05652"],"synonyms":[{"name":"Tpa","type":"related"},{"name":"taurine:pyruvate aminotransferase activity","type":"related"}],"termid":"GO:0031299"}


id: PBO:0026784
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cell_wall_(1->6)-beta-D-glucan_level","termid":"PBO:0026784"}


id: PBO:0062652
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 13 subfamily C member 2","termid":"PBO:0062652"}


id: MONDO:0011269
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any psoriasis in which the cause of the disease is a mutation in the CARD14 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"psoriasis","termid":"MONDO:0005083"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0005046"],"is_obsolete":false,"name":"psoriasis 2","secondary_identifiers":["NANDO:2200443","OMIM:602723","MEDGEN:351141","UMLS:C1864497","DOID:0080475"],"synonyms":[{"name":"CARD14 psoriasis","type":"exact"},{"name":"PSORS2","type":"related"},{"name":"psoriasis 2","type":"exact"},{"name":"psoriasis caused by mutation in CARD14","type":"exact"},{"name":"psoriasis type 2","type":"exact"}],"termid":"MONDO:0011269","xrefs":{"Monarch":{"xref_id":"0011269"}}}


id: MONDO:0023642
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"ocular motility disease","termid":"MONDO:0001584"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Weber syndrome","secondary_identifiers":["icd11.foundation:1609214113","ICD9:344.89","GARD:8676","MEDGEN:96812","SCTID:24654003","UMLS:C0455717"],"synonyms":[{"name":"Midbrain stroke syndromes","type":"related"},{"name":"Weber Syndrome","type":"related"},{"name":"Weber-Gubler syndrome","type":"exact"}],"termid":"MONDO:0023642","xrefs":{"Monarch":{"xref_id":"0023642"}}}


id: SO:0001817
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute describing a sequence that contains a mutation involving the deletion or insertion of one or more bases, where this number is divisible by 3.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA_attribute","termid":"SO:0000863"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inframe","termid":"SO:0001817"}


id: PBO:0029491
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormally_arrested_meiotic_cell_cycle","termid":"PBO:0029491"}


id: PBO:0001905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"rRNA processing protein Fcf2 (predicted)","termid":"PBO:0001905"}


id: PBO:0075246
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sorting nexin 16","termid":"PBO:0075246"}


id: PBO:0048673
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"galactosidase beta 1 like 3","termid":"PBO:0048673"}


id: GO:1904717
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of AMPA glutamate receptor clustering.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","GOC:hjd","PMID:21558424"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of glutamate receptor clustering","termid":"GO:0106104"},{"relation_name":"regulates","term_name":"AMPA glutamate receptor clustering","termid":"GO:0097113"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of AMPA glutamate receptor clustering","synonyms":[{"name":"regulation of AMPA receptor clustering","type":"exact"},{"name":"regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor clustering","type":"exact"}],"termid":"GO:1904717"}


id: PR:Q10328
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- phx1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10328"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"homeobox transcription factor phx1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC32A11.03c","synonyms":[{"name":"Spom972h-phx1","type":"exact"}],"termid":"PR:Q10328"}


id: PR:Q09750
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pst1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q09750"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paired amphipathic helix protein pst1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC12C2.10c","synonyms":[{"name":"SIN3 homolog 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-pst1","type":"exact"}],"termid":"PR:Q09750"}


id: PBO:0064537
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"POM121 transmembrane nucleoporin","termid":"PBO:0064537"}


id: GO:0022022
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The multiplication or reproduction of septal cells, resulting in the expansion of a cell population.","definition_xrefs":["GOC:cls","GOC:jid","GOC:dgh","GO_REF:0000021","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"subpallium cell proliferation in forebrain","termid":"GO:0022012"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"septal cell proliferation","synonyms":[{"name":"septum cell proliferation","type":"exact"}],"termid":"GO:0022022"}


id: PBO:0052186
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium two pore domain channel subfamily K member 18","termid":"PBO:0052186"}


id: PBO:0066783
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 81","termid":"PBO:0066783"}


id: GO:1990271
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Combining with anti-Mullerian hormone to initiate a change in cell activity.","definition_xrefs":["GOC:hjd","PMID:23624077"],"gene_count":0,"genotype_count":0,"name":"obsolete anti-Mullerian hormone (obsolete GO:1990271)","synonyms":[{"name":"anti-Mullerian hormone","type":"exact"}],"termid":"GO:1990271"}


id: PBO:0030883
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_microtubule_cytoskeleton_organization_during_vegetative_growth","termid":"PBO:0030883"}


id: PBO:0062576
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 10 subfamily D member 5 pseudogene","termid":"PBO:0062576"}


id: GO:0030719
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of polar granules, cytoplasmic, non-membranous RNA/protein complex aggregates in the primordial germ cells of many higher eukaryotes.","definition_xrefs":["PMID:10851135","PMID:770367"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle organization","termid":"GO:0006996"},{"relation_name":"part_of","term_name":"pole plasm assembly","termid":"GO:0007315"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"P granule organization","secondary_identifiers":["GO:0048114"],"synonyms":[{"name":"P granule organization and biogenesis","type":"related"},{"name":"polar granule organisation","type":"exact"},{"name":"polar granule organization and biogenesis","type":"exact"}],"termid":"GO:0030719"}


id: PBO:0049026
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein-coupled receptor 6","termid":"PBO:0049026"}


id: PBO:0086534
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; conserved among S. cerevisiae strains; overlaps verified ORF LSM5/YER146W","termid":"PBO:0086534"}


id: FYPO:0004132
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of sulfite reductase activity is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal catalytic activity","termid":"FYPO:0000660"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0000257","FYPO:0000654"],"is_obsolete":false,"name":"normal sulfite reductase activity","synonyms":[{"name":"normal sulphite reductase activity","type":"exact"}],"termid":"FYPO:0004132"}


id: GO:1903318
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of protein maturation.","definition_xrefs":["GOC:vw","GO_REF:0000058","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of gene expression","termid":"GO:0010629"},{"relation_name":"is_a","term_name":"negative regulation of protein metabolic process","termid":"GO:0051248"},{"relation_name":"is_a","term_name":"regulation of protein maturation","termid":"GO:1903317"},{"relation_name":"negatively_regulates","term_name":"protein maturation","termid":"GO:0051604"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0051604"},{"rel_name":"negatively_regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0051604"}],"interesting_parent_ids":["GO:0051604","GO:0008150","GO:0010467"],"is_obsolete":false,"name":"negative regulation of protein maturation","synonyms":[{"name":"down regulation of protein maturation","type":"exact"},{"name":"down-regulation of protein maturation","type":"exact"},{"name":"downregulation of protein maturation","type":"exact"},{"name":"inhibition of protein maturation","type":"narrow"}],"termid":"GO:1903318"}


id: MONDO:0016185
data:
  {"annotated_genes":["SJAG_04053","SJAG_04316"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88500,88499],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013162"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"qualitative or quantitative defects of protein involved in O-glycosylation of alpha-dystroglycan","termid":"MONDO:0016155"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04053":null,"SJAG_04316":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"},{"rel_name":"is_a","termid":"MONDO:0024322"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0024322","MONDO:0002320","MONDO:0005066"],"is_obsolete":false,"name":"qualitative or quantitative defects of protein O-mannosyltransferase 2","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5680852","MEDGEN:1842845","GARD:20424","Orphanet:209033"],"synonyms":[{"name":"qualitative or quantitative defects of protein O-mannosyltransferase type 2","type":"exact"}],"termid":"MONDO:0016185","terms_by_termid":{"MONDO:0013162":null},"xrefs":{"Monarch":{"xref_id":"0016185"}}}


id: PBO:0052403
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"killer cell immunoglobulin like receptor, two Ig domains and long cytoplasmic tail 4","termid":"PBO:0052403"}


id: GO:0034782
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: dimethylmalonate + H+ = isobutyrate + CO2.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete dimethylmalonate decarboxylase activity (obsolete GO:0034782)","termid":"GO:0034782"}


id: PBO:0025439
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutaric acidemia type II","termid":"PBO:0025439"}


id: MONDO:0017368
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete systemic disease with skin involvement (obsolete MONDO:0017368)","secondary_identifiers":["Orphanet:290836"],"termid":"MONDO:0017368","xrefs":{"Monarch":{"xref_id":"0017368"}}}


id: PBO:0082213
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Alpha 2 subunit of the 20S proteasome","termid":"PBO:0082213"}


id: GO:0008905
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the transfer of a phosphate group from GTP or GDP to a mannose molecule.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete mannose-phosphate guanylyltransferase activity (obsolete GO:0008905)","termid":"GO:0008905"}


id: PBO:0082762
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the small subunit processome; involved in 40S ribosomal subunit biogenesis; interacts with snR30 and is required for dissociation of snR30 from large pre-ribosomal particles; has homology to PINc domain protein Fcf1p, although the PINc domain of Utp23p is not required for function; essential protein","termid":"PBO:0082762"}


id: FYPO:0005200
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cell morphology phenotype in which a vegetative cell is inviable and elongated during a cellular response to ultraviolet light.","definition_xrefs":["PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete inviable elongated vegetative cell during cellular response to UV (obsolete FYPO:0005200)","synonyms":[{"name":"elongated inviable cell during cellular response to UV during vegetative growth","type":"exact"},{"name":"elongated inviable vegetative cell during cellular response to UV","type":"exact"},{"name":"inviable elongated vegetative cell during cellular response to UV during mitotic cell cycle","type":"related"},{"name":"inviable elongated vegetative cell during cellular response to ultraviolet light","type":"exact"},{"name":"lethal; elongated vegetative cell during cellular response to UV","type":"exact"}],"termid":"FYPO:0005200"}


id: GO:0018484
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 4-hydroxybenzaldehyde + NAD+ + H2O = 4-hydroxybenzoate + NADH + H+.","definition_xrefs":["EC:1.2.1.64"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde dehydrogenase (NAD+) activity","termid":"GO:0004029"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"4-hydroxybenzaldehyde dehydrogenase (NAD+) activity","secondary_identifiers":["RHEA:20305","MetaCyc:HYDROXYBENZALDEHYDE-OXIDATION-NAD-RXN","Reactome:R-HSA-9856794","UM-BBD_reactionID:r0273"],"synonyms":[{"name":"3-hydroxybenzaldehyde:NAD+ oxidoreductase activity","type":"related"},{"name":"p-hydroxybenzaldehyde dehydrogenase activity","type":"related"}],"termid":"GO:0018484"}


id: PBO:0061467
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear receptor binding factor 2 pseudogene 2","termid":"PBO:0061467"}


id: MONDO:0014414
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"lymphoproliferative syndrome","termid":"MONDO:0016537"},{"relation_name":"excluded_subClassOf","term_name":"autoimmune thrombocytopenia","termid":"MONDO:0019098"},{"relation_name":"excluded_subClassOf","term_name":"autoimmune hemolytic anemia","termid":"MONDO:0020108"},{"relation_name":"is_a","term_name":"autoimmune disease, multisystem, infantile-onset","termid":"MONDO:0000213"},{"relation_name":"is_a","term_name":"hematopoietic and lymphoid system neoplasm","termid":"MONDO:0002334"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0005046"],"is_obsolete":false,"name":"STAT3-related early-onset multisystem autoimmune disease","secondary_identifiers":["MEDGEN:863232","OMIM:615952","GARD:17737","NCIT:C157123","UMLS:C4014795","Orphanet:438159"],"synonyms":[{"name":"ADMIO","type":"related"},{"name":"ADMIO1","type":"related"},{"name":"autoimmune disease, multisystem, infantile-onset","type":"related"},{"name":"autoimmune disease, multisystem, infantile-onset, 1","type":"related"}],"termid":"MONDO:0014414","xrefs":{"Monarch":{"xref_id":"0014414"}}}


id: MONDO:0007729
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"developmental dysplasia of the hip","termid":"MONDO:0000158"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"developmental dysplasia of the hip 1","secondary_identifiers":["OMIM:142700","UMLS:C1306065","MEDGEN:266288","DOID:0060931"],"synonyms":[{"name":"DDH1","type":"exact"},{"name":"acetabular dysplasia","type":"broad"},{"name":"developmental dysplasia of the hip 1","type":"exact"},{"name":"hip dysplasia, congenital","type":"broad"},{"name":"hip dysplasia, developmental","type":"related"}],"termid":"MONDO:0007729","xrefs":{"Monarch":{"xref_id":"0007729"}}}


id: GO:0004892
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete B cell receptor activity (obsolete GO:0004892)","synonyms":[{"name":"B cell receptor activity","type":"exact"}],"termid":"GO:0004892"}


id: GO:0015506
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: nucleoside(out) + H+(out) = nucleoside(in) + H+(in).","definition_xrefs":["TC:2.A.1.10.1","TC:2.A.41.1.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleoside transmembrane transporter activity","termid":"GO:0005337"},{"relation_name":"is_a","term_name":"solute:proton symporter activity","termid":"GO:0015295"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"nucleoside:proton symporter activity","secondary_identifiers":["GO:0015536"],"synonyms":[{"name":"nucleoside permease activity","type":"related"},{"name":"nucleoside:hydrogen ion symporter activity","type":"exact"},{"name":"nucleoside:hydrogen symporter activity","type":"exact"}],"termid":"GO:0015506"}


id: PBO:0000625
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WLM domain protein","termid":"PBO:0000625"}


id: MONDO:0009434
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"MHC class I deficiency","termid":"MONDO:0011476"},{"relation_name":"is_a","term_name":"immunodeficiency disease","termid":"MONDO:0021094"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"hypoproteinemia, hypercatabolic","secondary_identifiers":["DOID:0111981","UMLS:C1855796","OMIM:241600","GARD:15185","MEDGEN:343422","MESH:C565476"],"synonyms":[{"name":"B2M deficiency","type":"related"},{"name":"Beta-2-microglobulin deficiency","type":"related"},{"name":"IMD43","type":"related"},{"name":"hypoproteinemia, hypercatabolic","type":"exact"},{"name":"immunodeficiency 43","type":"related"}],"termid":"MONDO:0009434","xrefs":{"Monarch":{"xref_id":"0009434"}}}


id: PBO:0086663
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; identified based on comparison to related yeast species; mCherry fusion protein localizes to the vacuole","termid":"PBO:0086663"}


id: GO:0075137
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of the symbiont organism or its cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detecting the redox environment in host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to host","termid":"GO:0075136"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to host redox environment","synonyms":[{"name":"response of symbiont to host redox environment","type":"exact"}],"termid":"GO:0075137"}


id: MONDO:0011483
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"polycystic bone disease","secondary_identifiers":["OMIM:604771","MEDGEN:346749","MESH:C536324","UMLS:C1858143"],"synonyms":[{"name":"Pcbd","type":"related"},{"name":"polycystic bone disease","type":"exact"}],"termid":"MONDO:0011483","xrefs":{"Monarch":{"xref_id":"0011483"}}}


id: PBO:0061772
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"odorant binding protein 2B","termid":"PBO:0061772"}


id: PBO:0077361
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 101","termid":"PBO:0077361"}


id: PBO:0000457
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tryptophan-tRNA ligase Wrs1 (predicted)","termid":"PBO:0000457"}


id: GO:0051348
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops or reduces the rate of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of catalytic activity","termid":"GO:0043086"},{"relation_name":"is_a","term_name":"regulation of transferase activity","termid":"GO:0051338"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of transferase activity","synonyms":[{"name":"down regulation of transferase activity","type":"exact"},{"name":"down-regulation of transferase activity","type":"exact"},{"name":"downregulation of transferase activity","type":"exact"},{"name":"inhibition of transferase activity","type":"narrow"},{"name":"transferase inhibitor","type":"exact"}],"termid":"GO:0051348"}


id: PBO:0068014
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 319","termid":"PBO:0068014"}


id: PBO:0014278
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ERMES complex subunit Mmm1 (predicted)","termid":"PBO:0014278"}


id: PBO:0116798
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CYP3A4 antisense RNA 1","termid":"PBO:0116798"}


id: GO:1902148
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of response to cytokinesis checkpoint signaling.","definition_xrefs":["GOC:TermGenie","GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of response to cell cycle checkpoint signaling","termid":"GO:1902146"},{"relation_name":"is_a","term_name":"regulation of response to cytokinesis checkpoint signaling","termid":"GO:1902147"},{"relation_name":"positively_regulates","term_name":"response to cytokinesis checkpoint signaling","termid":"GO:0072399"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of response to cytokinesis checkpoint signaling","secondary_identifiers":["GO:1902150"],"synonyms":[{"name":"activation of cytokinesis checkpoint effector process","type":"exact"},{"name":"activation of response to cytokinesis checkpoint signaling","type":"narrow"},{"name":"activation of response to signal involved in cytokinesis checkpoint","type":"exact"},{"name":"positive regulation of cytokinesis checkpoint effector process","type":"exact"},{"name":"positive regulation of response to signal involved in cytokinesis checkpoint","type":"exact"},{"name":"up regulation of cytokinesis checkpoint effector process","type":"exact"},{"name":"up regulation of response to cytokinesis checkpoint signaling","type":"exact"},{"name":"up regulation of response to signal involved in cytokinesis checkpoint","type":"exact"},{"name":"up-regulation of cytokinesis checkpoint effector process","type":"exact"},{"name":"up-regulation of response to cytokinesis checkpoint signaling","type":"exact"},{"name":"up-regulation of response to signal involved in cytokinesis checkpoint","type":"exact"},{"name":"upregulation of cytokinesis checkpoint effector process","type":"exact"},{"name":"upregulation of response to cytokinesis checkpoint signaling","type":"exact"},{"name":"upregulation of response to signal involved in cytokinesis checkpoint","type":"exact"}],"termid":"GO:1902148"}


id: MONDO:0001693
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. A gender identity disorder that is characterized by having a sexual orientation or an attraction that is at odds with one's idealized self-image, causing anxiety and a desire to change one's orientation or become more comfortable with one's sexual orientation.","definition_xrefs":["DOID:13352"],"gene_count":0,"genotype_count":0,"name":"obsolete ego-dystonic sexual orientation (obsolete MONDO:0001693)","secondary_identifiers":["ICD9:302.0"],"termid":"MONDO:0001693","xrefs":{"Monarch":{"xref_id":"0001693"}}}


id: PBO:0073449
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secreted frizzled related protein 4","termid":"PBO:0073449"}


id: PBO:0089118
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotic spindle pole body KASH domain protein Kms1","termid":"PBO:0089118"}


id: FYPO:0003095
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a vegetative cell is viable and elongated, and continues to become longer over successive generations. The cell also undergoes mitosis beginning when the cell is longer than normal.","definition_xrefs":["PMID:24013504","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"viable elongated vegetative cell, elongated upon mitotic entry","termid":"FYPO:0003481"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0000631","FYPO:0000005","FYPO:0001985","FYPO:0000004","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"viable elongated vegetative cell, with progressive elongation","synonyms":[{"name":"progressively elongating viable vegetative cell","type":"exact"}],"termid":"FYPO:0003095"}


id: SO:0001507
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A collection of one or more sequences of an individual.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"has_part","term_name":"sequence_alteration","termid":"SO:0001059"},{"relation_name":"is_a","term_name":"sequence_collection","termid":"SO:0001260"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"variant_collection","synonyms":[{"name":"variant collection","type":"related"}],"termid":"SO:0001507"}


id: MOD:00491
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"modification from Unimod Chemical derivative","definition_xrefs":["PubMed:11861642","Unimod:119#C"],"direct_ancestors":[{"relation_name":"is_a","term_name":"reagent derivatized residue","termid":"MOD:00848"},{"relation_name":"is_a","term_name":"phosphorus containing modified residue","termid":"MOD:00861"},{"relation_name":"is_a","term_name":"modified L-cysteine residue","termid":"MOD:00905"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"thio ether formation - BTP Adduct","synonyms":[{"name":"IBTP","type":"related"},{"name":"Thio Ether Formation - BTP Adduct","type":"related"}],"termid":"MOD:00491"}


id: PBO:0062671
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 13 subfamily Z member 2 pseudogene","termid":"PBO:0062671"}


id: GO:0036118
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that results in the aggregation, arrangement and bonding together of a hyaluranon cable, a cable structure, surrounding some cell types (e.g. proximal or bronchial tubular epithelial cells), and composed of hyaluranon (HA), a ubiquitous connective tissue glycosaminoglycan.","definition_xrefs":["GOC:yaf","PMID:16900089"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component assembly","termid":"GO:0022607"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0044085"],"is_obsolete":false,"name":"hyaluranon cable assembly","synonyms":[{"name":"HA cable assembly","type":"exact"}],"termid":"GO:0036118"}


id: FYPO:0006547
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A localization phenotype observed in the vegetative growth phase of the life cycle in which the distribution of phosphatidylserine (PS) in the plasma membrane is abnormal such that the PS level is lower than normal at one or both cell tips. Normally, PS shows a polarized distribution with a higher concentration at the cell tips than in the lateral plasma membrane.","definition_xrefs":["PomBase:mah","PMID:27852900"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal plasma membrane phosphatidylserine distribution","termid":"FYPO:0006497"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0000002","FYPO:0000138","FYPO:0005447"],"is_obsolete":false,"name":"abnormal plasma membrane phosphatidylserine distribution resulting in decreased concentration at cell tip","synonyms":[{"name":"abnormal plasma membrane PS distribution resulting in decreased concentration at cell tip","type":"exact"},{"name":"abnormal plasma membrane phosphatidylserine distribution resulting in decreased concentration at cell tip during mitotic cell cycle","type":"related"},{"name":"abnormal plasma membrane phosphatidylserine distribution resulting in decreased concentration at cell tip during vegetative growth","type":"exact"},{"name":"abnormal plasma membrane phosphatidylserine distribution resulting in reduced concentration at cell tip","type":"exact"},{"name":"decreased plasma membrane phosphatidylserine polarity","type":"related"},{"name":"reduced plasma membrane phosphatidylserine polarity","type":"related"}],"termid":"FYPO:0006547"}


id: PBO:0047500
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"flap structure-specific endonuclease 1 pseudogene 1","termid":"PBO:0047500"}


id: GO:0050809
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to diazepam, one of the most widely used benzodiazepine drugs. It is used as an anti-anxiety-hypnotic agent and has the proprietary name Valium.","definition_xrefs":["ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"binding","termid":"GO:0005488"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"diazepam binding","synonyms":[{"name":"Valium binding","type":"exact"},{"name":"diazepam binding inhibitor activity","type":"related"}],"termid":"GO:0050809"}


id: GO:0097106
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process that results in the assembly, arrangement of constituent parts, or disassembly of a postsynaptic density, a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse.","definition_xrefs":["GOC:BHF","GOC:sjp","PMID:21525273"],"direct_ancestors":[{"relation_name":"is_a","term_name":"postsynaptic specialization organization","termid":"GO:0099084"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"postsynaptic density organization","synonyms":[{"name":"PSD organization","type":"exact"},{"name":"post synaptic density organization","type":"exact"},{"name":"post-synaptic density organization","type":"exact"},{"name":"postsynaptic density organisation","type":"exact"}],"termid":"GO:0097106"}


id: MONDO:0016392
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Cerebellar hypoplasia-tapetoretinal degeneration syndrome is a rare syndrome with a cerebellar malformation as a major feature characterized by cerebellar hypoplasia, bilateral retinal pigmentary changes, intellectual disability that can range from mild to moderate and pronounced language development delay. It presents with early developmental delay, central and peripheral non-progressive visual impairment or asymptomatic retinal changes, hypotonia, non-progressive ataxia and nystagmus.","definition_xrefs":["Orphanet:2246"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system disorder","termid":"MONDO:0005071"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cerebellar hypoplasia-tapetoretinal degeneration syndrome","secondary_identifiers":["MEDGEN:902621","GARD:1196","UMLS:C4275139","DOID:0070339"],"synonyms":[{"name":"cerebellar hypoplasia tapetoretinal degeneration","type":"related"}],"termid":"MONDO:0016392","xrefs":{"Monarch":{"xref_id":"0016392"}}}


id: FYPO:0007045
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of alkaline phosphatase activity is decreased during a cellular response to zinc ion starvation.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased alkaline phosphatase activity","termid":"FYPO:0007042"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000661","FYPO:0000654","FYPO:0000707","FYPO:0000652"],"is_obsolete":false,"name":"decreased alkaline phosphatase activity during cellular response to zinc ion starvation","synonyms":[{"name":"decreased alkaline phosphatase activity during cellular response to zinc ion depletion","type":"exact"},{"name":"decreased alkaline phosphatase activity during cellular response to zinc ion deprivation","type":"exact"},{"name":"decreased alkaline phosphatase activity during cellular response to zinc ion limitation","type":"exact"},{"name":"decreased alkaline phosphatase activity during cellular response to zinc starvation","type":"exact"},{"name":"reduced alkaline phosphatase activity during cellular response to zinc ion starvation","type":"exact"}],"termid":"FYPO:0007045"}


id: PBO:0008887
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mating-type M-specific polypeptide Mi at silenced MAT3 locus","termid":"PBO:0008887"}


id: GO:0032045
data:
  {"annotated_genes":["SJAG_03928","SJAG_03089","SJAG_03678","SJAG_01659","SJAG_02307","SJAG_02471","SJAG_06588","SJAG_01032","SJAG_01576","SJAG_00688","SJAG_00143","SJAG_01367"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[78981,79243,73687,74266,75697],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005851"},{"annotations":[92849],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035658"},{"annotations":[109802,94756,107071,95917],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071986"},{"annotations":[79058,77580],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0034066"}]},"cv_name":"cellular_component","definition":"A protein complex that stimulates the exchange of guanyl nucleotides associated with a GTPase.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intracellular protein-containing complex","termid":"GO:0140535"}],"gene_count":12,"genes_by_uniquename":{"SJAG_00143":null,"SJAG_00688":null,"SJAG_01032":null,"SJAG_01367":null,"SJAG_01576":null,"SJAG_01659":null,"SJAG_02307":null,"SJAG_02471":null,"SJAG_03089":null,"SJAG_03678":null,"SJAG_03928":null,"SJAG_06588":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"guanyl-nucleotide exchange factor complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"guanine nucleotide exchange factor","type":"related"}],"termid":"GO:0032045","terms_by_termid":{"GO:0005851":null,"GO:0034066":null,"GO:0035658":null,"GO:0071986":null}}


id: PBO:0047959
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, aphidicolin type, common, fra(22)(q12.2)","termid":"PBO:0047959"}


id: GO:0072190
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the urothelium of the ureter over time, from its formation to the mature structure. The urothelium is an epithelium that makes up the epithelial tube of the ureter.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelium development","termid":"GO:0060429"},{"relation_name":"part_of","term_name":"ureter development","termid":"GO:0072189"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ureter urothelium development","synonyms":[{"name":"ureter epithelium development","type":"exact"}],"termid":"GO:0072190"}


id: PBO:0000048
data:
  {"annotation_feature_type":"gene","cv_name":"feature_cvtermprop_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"date","termid":"PBO:0000048"}


id: PBO:0050693
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heat shock protein family A (Hsp70) member 8 pseudogene 20","termid":"PBO:0050693"}


id: PBO:0073068
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"syndecan binding protein","termid":"PBO:0073068"}


id: GO:0000191
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Upregulation of MAPKKK activity in the context of regulating pseudohyphal or invasive growth.","definition_xrefs":["PMID:9561267"],"gene_count":0,"genotype_count":0,"name":"obsolete activation of MAPKKK (pseudohyphal growth) (obsolete GO:0000191)","synonyms":[{"name":"activation of MAPKKK (pseudohyphal growth)","type":"exact"}],"termid":"GO:0000191"}


id: PBO:0057904
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3605","termid":"PBO:0057904"}


id: PBO:0062572
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 10 subfamily C member 1","termid":"PBO:0062572"}


id: MONDO:0013094
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"glioma susceptibility","termid":"MONDO:0100242"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glioma susceptibility 5","secondary_identifiers":["MEDGEN:414430","OMIM:613030","UMLS:C2751640"],"synonyms":[{"name":"GLM5","type":"exact"},{"name":"glioma susceptibility 5","type":"exact"}],"termid":"MONDO:0013094","xrefs":{"Monarch":{"xref_id":"0013094"}}}


id: FYPO:0003915
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which the amount of protein measured in the mitochondrion is lower than normal when the cell is in the vegetative growth phase of the life cycle. Total protein or a specific protein may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein level during vegetative growth","termid":"FYPO:0001324"},{"relation_name":"is_a","term_name":"altered level of substance in mitochondrion","termid":"FYPO:0004957"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0006551"],"is_obsolete":false,"name":"decreased mitochondrial protein level","synonyms":[{"name":"decreased level of mitochondrial proteins","type":"exact"},{"name":"decreased mitochondrial protein level during mitotic cell cycle","type":"related"},{"name":"decreased mitochondrial protein level during vegetative growth","type":"exact"},{"name":"decreased protein level in mitochondrion during vegetative growth","type":"exact"},{"name":"reduced mitochondrial protein level","type":"exact"}],"termid":"FYPO:0003915"}


id: PBO:0045746
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous Bornavirus like nucleoprotein 3, pseudogene","termid":"PBO:0045746"}


id: GO:0003407
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the neural retina over time from its initial formation to the mature structure. The neural retina is the part of the retina that contains neurons and photoreceptor cells.","definition_xrefs":["GOC:ascb_2009","GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure development","termid":"GO:0048856"},{"relation_name":"part_of","term_name":"retina development in camera-type eye","termid":"GO:0060041"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neural retina development","termid":"GO:0003407"}


id: MONDO:0019054
data:
  {"annotated_genes":["SJAG_04697","SJAG_02701","SJAG_02556","SJAG_02200","SJAG_00611","SJAG_03144","SJAG_01831","SJAG_01863","SJAG_01213","SJAG_00796","SJAG_04975","SJAG_00112","SJAG_00068","SJAG_03484","SJAG_03106","SJAG_05180","SJAG_01410","SJAG_01852","SJAG_04092","SJAG_03703","SJAG_02708","SJAG_06383","SJAG_04995","SJAG_01065","SJAG_00414","SJAG_02096","SJAG_03847","SJAG_02339","SJAG_01665","SJAG_00875","SJAG_00773","SJAG_05019","SJAG_00504","SJAG_03506","SJAG_03379","SJAG_01067","SJAG_00853","SJAG_00197","SJAG_02431","SJAG_00295","SJAG_00183","SJAG_05194"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86959],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014651"},{"annotations":[87975,87976],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013895"},{"annotations":[86899],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012282"},{"annotations":[88527],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032903"},{"annotations":[88360],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030281"},{"annotations":[87532],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0030847"},{"annotations":[88961,88960],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032751"},{"annotations":[88367],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008822"},{"annotations":[87653],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014248"},{"annotations":[88150,88151],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012137"},{"annotations":[88968,88967],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008338"},{"annotations":[88992,88993],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0020746"},{"annotations":[87381],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007387"},{"annotations":[88863],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010370"},{"annotations":[87521],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012555"},{"annotations":[87979],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013864"},{"annotations":[88086],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0957921"},{"annotations":[88152],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013248"},{"annotations":[88576],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013499"},{"annotations":[86860],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014108"},{"annotations":[88831],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014986"},{"annotations":[88835],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014987"},{"annotations":[88832],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014985"},{"annotations":[87962],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0100104"},{"annotations":[89007,89006],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008675"},{"annotations":[88158],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009398"},{"annotations":[87997],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013882"},{"annotations":[88423],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014318"},{"annotations":[88701],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014457"},{"annotations":[87605],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014780"},{"annotations":[88851],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010532"},{"annotations":[87811],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012750"},{"annotations":[88016],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009670"},{"annotations":[87320],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012656"},{"annotations":[87261],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014552"},{"annotations":[87809],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012516"},{"annotations":[87016],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0007943"},{"annotations":[87239],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009903"},{"annotations":[87398,87399],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009955"},{"annotations":[87643],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014806"},{"annotations":[87642],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014807"},{"annotations":[88568],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010408"},{"annotations":[87464],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014848"},{"annotations":[88918],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0010121"},{"annotations":[87513,87512],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0008016"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"developmental defect during embryogenesis","termid":"MONDO:0019755"}],"gene_count":42,"genes_by_uniquename":{"SJAG_00068":null,"SJAG_00112":null,"SJAG_00183":null,"SJAG_00197":null,"SJAG_00295":null,"SJAG_00414":null,"SJAG_00504":null,"SJAG_00611":null,"SJAG_00773":null,"SJAG_00796":null,"SJAG_00853":null,"SJAG_00875":null,"SJAG_01065":null,"SJAG_01067":null,"SJAG_01213":null,"SJAG_01410":null,"SJAG_01665":null,"SJAG_01831":null,"SJAG_01852":null,"SJAG_01863":null,"SJAG_02096":null,"SJAG_02200":null,"SJAG_02339":null,"SJAG_02431":null,"SJAG_02556":null,"SJAG_02701":null,"SJAG_02708":null,"SJAG_03106":null,"SJAG_03144":null,"SJAG_03379":null,"SJAG_03484":null,"SJAG_03506":null,"SJAG_03703":null,"SJAG_03847":null,"SJAG_04092":null,"SJAG_04697":null,"SJAG_04975":null,"SJAG_04995":null,"SJAG_05019":null,"SJAG_05180":null,"SJAG_05194":null,"SJAG_06383":null},"genotype_count":0,"is_obsolete":false,"name":"congenital limb malformation","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["Orphanet:68378"],"synonyms":[{"name":"congenital limb 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id: PR:O94459
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ssl3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94459"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAU2 chromatid cohesion factor homolog (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1687.18c","synonyms":[{"name":"Spom972h-ssl3","type":"exact"},{"name":"sister chromatid cohesion protein ssl3 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94459"}


id: GO:0018858
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + benzoate + CoA = AMP + benzoyl-CoA + diphosphate.","definition_xrefs":["EC:6.2.1.25","RHEA:10132"],"direct_ancestors":[{"relation_name":"is_a","term_name":"CoA-ligase activity","termid":"GO:0016405"},{"relation_name":"is_a","term_name":"acid-thiol ligase activity","termid":"GO:0016878"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016874"],"is_obsolete":false,"name":"benzoate-CoA ligase activity","secondary_identifiers":["MetaCyc:BENZOATE--COA-LIGASE-RXN","UM-BBD_reactionID:r0189","KEGG_REACTION:R01422"],"synonyms":[{"name":"benzoate-coenzyme A ligase activity","type":"related"},{"name":"benzoate:CoA ligase (AMP-forming)","type":"related"},{"name":"benzoyl CoA synthetase (AMP forming)","type":"related"},{"name":"benzoyl-coenzyme A synthetase activity","type":"related"}],"termid":"GO:0018858"}


id: PBO:0062394
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily E member 15 pseudogene","termid":"PBO:0062394"}


id: MONDO:0001238
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A condition in which the red blood cell level is greater than established reference ranges in a newborn.","definition_xrefs":["NCIT:C27069"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polycythemia","termid":"MONDO:0005571"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005570"],"is_obsolete":false,"name":"polycythemia neonatorum","secondary_identifiers":["ICD9:776.4","SCTID:32984002","ICD10CM:P61.1","MEDGEN:78794","UMLS:C0272153","DOID:11242"],"synonyms":[{"name":"neonatal polycythemia","type":"exact"},{"name":"plethora of newborn","type":"related"},{"name":"polycythemia neonatorum","type":"exact"},{"name":"polycythemia of the newborn","type":"exact"}],"termid":"MONDO:0001238","xrefs":{"Monarch":{"xref_id":"0001238"}}}


id: PBO:0054512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1912","termid":"PBO:0054512"}


id: PBO:0045040
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dyskerin pseudouridine synthase 1","termid":"PBO:0045040"}


id: FYPO:0006344
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a protein that is not normally found at the plasma membrane is observed there.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mislocalized protein during vegetative growth","termid":"FYPO:0000782"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0000138","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"protein mislocalized to plasma membrane during vegetative growth","synonyms":[{"name":"ectopic protein localization to plasma membrane during vegetative growth","type":"exact"},{"name":"protein mislocalised to plasma membrane during vegetative growth","type":"exact"},{"name":"protein mislocalized to plasma membrane during mitotic cell cycle","type":"related"}],"termid":"FYPO:0006344"}


id: GO:1902223
data:
  {"annotated_genes":["SJAG_01455","SJAG_02505","SJAG_04652","SJAG_03124","SJAG_03312","SJAG_05007","SJAG_03167"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[100238,79731],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0009094"},{"annotations":[75229,75957,70064,79025],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0000162"},{"annotations":[80552,78460],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006571"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of erythrose 4-phosphate/phosphoenolpyruvate family amino acid.","definition_xrefs":["GOC:pr","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"L-amino acid biosynthetic process","termid":"GO:0170034"},{"relation_name":"is_a","term_name":"proteinogenic amino acid biosynthetic process","termid":"GO:0170038"},{"relation_name":"is_a","term_name":"erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process","termid":"GO:1902221"}],"gene_count":7,"genes_by_uniquename":{"SJAG_01455":null,"SJAG_02505":null,"SJAG_03124":null,"SJAG_03167":null,"SJAG_03312":null,"SJAG_04652":null,"SJAG_05007":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0006520","GO:0008150","GO:0044281"],"is_obsolete":false,"name":"erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000041":null,"GO_REF:0000107":null},"synonyms":[{"name":"erythrose 4-phosphate/phosphoenolpyruvate family amino acid anabolism","type":"exact"},{"name":"erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthesis","type":"exact"},{"name":"erythrose 4-phosphate/phosphoenolpyruvate family amino acid formation","type":"exact"},{"name":"erythrose 4-phosphate/phosphoenolpyruvate family amino acid synthesis","type":"exact"}],"termid":"GO:1902223","terms_by_termid":{"GO:0000162":null,"GO:0006571":null,"GO:0009094":null}}


id: PR:Q11119
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A ubiquitin carboxyl-terminal hydrolase 5 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin carboxyl-terminal hydrolase 14 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC6B1.06c","secondary_identifiers":["UniProtKB:Q11119"],"synonyms":[{"name":"SPBC6B1.06c","type":"related"},{"name":"Spom972h-USP5","type":"exact"},{"name":"UBA domain-containing protein 2 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"deubiquitinating enzyme 14 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ubiquitin thioesterase 14 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ubiquitin-specific-processing protease 14 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ucp2","type":"related"}],"termid":"PR:Q11119"}


id: GO:0033629
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate, or extent of cell adhesion mediated by integrin.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of cell adhesion","termid":"GO:0007162"},{"relation_name":"is_a","term_name":"regulation of cell adhesion mediated by integrin","termid":"GO:0033628"},{"relation_name":"negatively_regulates","term_name":"cell adhesion mediated by integrin","termid":"GO:0033627"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0007155"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0008150","GO:0007155"],"is_obsolete":false,"name":"negative regulation of cell adhesion mediated by integrin","synonyms":[{"name":"negative regulation of cell adhesion mediated by integrin complex","type":"exact"}],"termid":"GO:0033629"}


id: PBO:0048930
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GOLM2 pseudogene 1","termid":"PBO:0048930"}


id: PBO:0029041
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_septation_index_in_stationary_phase","termid":"PBO:0029041"}


id: PBO:0072506
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein SA pseudogene 35","termid":"PBO:0072506"}


id: GO:0061831
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Testis-specific junction between mature spermatids and Sertoli cells at the luminal end of the Sertoli cell.","definition_xrefs":["PMID:22332112","GOC:dph","GOC:bc","PMID:23546604","GOC:aruk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell junction","termid":"GO:0005911"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"apical ectoplasmic specialization","synonyms":[{"name":"apical ES","type":"exact"}],"termid":"GO:0061831"}


id: PR:O94632
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- egt1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94632"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ergothioneine biosynthesis protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1604.01","synonyms":[{"name":"Spom972h-egt1","type":"exact"},{"name":"meiotically up-regulated gene 158 protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94632"}


id: PBO:0012292
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FACT complex subunit Pob3","termid":"PBO:0012292"}


id: _global:is_active_in
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"c executes activity in d if and only if c enables p and p occurs_in d.  Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.","direct_ancestors":[{"relation_name":"is_a","term_name":"functionally_related_to","termid":"_global:functionally_related_to"},{"relation_name":"is_a","term_name":"overlaps","termid":"_global:overlaps"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"is_active_in","secondary_identifiers":["RO:0002432"],"synonyms":[{"name":"enables activity in","type":"exact"}],"termid":"_global:is_active_in"}


id: GO:0060796
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter that results in cells adopting an endoderm, ectoderm or mesoderm cell fate.","definition_xrefs":["GOC:sdb_2009","GOC:dph","GOC:tb"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of transcription involved in primary germ layer cell fate commitment (obsolete GO:0060796)","termid":"GO:0060796"}


id: MONDO:1010885
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any neuronal ceroid lipofuscinosis that occurs in dogs due to a mutation in the TPP1 gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"neuronal ceroid lipofuscinosis, dog","termid":"MONDO:1011570"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuronal ceroid lipofuscinosis, TPP1-related, dog","secondary_identifiers":["OMIA:001472-9615"],"synonyms":[{"name":"neuronal ceroid lipofuscinosis, 2, dog","type":"related"}],"termid":"MONDO:1010885","xrefs":{"Monarch":{"xref_id":"1010885"}}}


id: PBO:0043960
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"crystallin gamma E, pseudogene","termid":"PBO:0043960"}


id: MONDO:0100418
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any acute myeloid leukemia that has the chromosomal anomaly KIT exon 17 mutation. (A molecular genetic abnormality indicating the presence of a mutation in exon 17 of the KIT gene located within 4q11-q12.)","definition_xrefs":["NCIT:C116396"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acute myeloid leukemia","termid":"MONDO:0018874"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"},{"rel_name":"is_a","termid":"MONDO:0004992"},{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570","MONDO:0004992","MONDO:0005046"],"is_obsolete":false,"name":"acute myeloid leukemia, KIT exon 17 mutation","synonyms":[{"name":"AML, CD117 Exon 17 Mutation","type":"exact"},{"name":"AML, KIT Proto-Oncogene Tyrosine Protein Kinase Gene Exon 17 Mutation","type":"exact"},{"name":"AML, KIT exon 17 mutation","type":"exact"},{"name":"AML, c-KIT Exon 17 Mutation","type":"exact"},{"name":"AML, v-Kit Hardy-Zuckerman 4 Feline Sarcoma Viral Oncogene Homolog Gene Exon 17 Mutation","type":"exact"}],"termid":"MONDO:0100418","xrefs":{"Monarch":{"xref_id":"0100418"}}}


id: PBO:0040126
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ankyrin repeat and SOCS box containing 12","termid":"PBO:0040126"}


id: PBO:0079786
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UDP glucuronosyltransferase family 1 member A7","termid":"PBO:0079786"}


id: PBO:0041576
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C21orf62 antisense RNA 1","termid":"PBO:0041576"}


id: PBO:0084240
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Inhibitor of carboxypeptidase Y (Prc1p), and Ras GAP (Ira2p); phosphatidylethanolamine-binding protein (PEBP) family member and ortholog of hPEBP1/RKIP, a natural metastasis suppressor; targets to vacuolar membranes during stationary phase; acetylated by NatB N-terminal acetyltransferase; protein abundance increases in response to DNA replication stress","termid":"PBO:0084240"}


id: GO:0070631
data:
  {"annotated_genes":["SJAG_04558","SJAG_03200","SJAG_01460","SJAG_01422","SJAG_02332","SJAG_05196"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[114833,105378,104741,102512,91974,113416],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140480"}]},"cv_name":"biological_process","definition":"Any process in which a spindle pole body is transported to, or maintained in, a specific location. A spindle pole body is a type of microtubule organizing center found in fungal cells.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular localization","termid":"GO:0051641"},{"relation_name":"is_a","term_name":"microtubule organizing center localization","termid":"GO:0061842"}],"gene_count":6,"genes_by_uniquename":{"SJAG_01422":null,"SJAG_01460":null,"SJAG_02332":null,"SJAG_03200":null,"SJAG_04558":null,"SJAG_05196":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"spindle pole body localization","references_by_uniquename":{"GO_REF:0000107":null},"secondary_identifiers":["GO:0071790","GO:1990944"],"synonyms":[{"name":"maintenance of spindle pole body localization","type":"narrow"},{"name":"spindle pole body localisation","type":"exact"}],"termid":"GO:0070631","terms_by_termid":{"GO:0140480":null}}


id: PATO:0002222
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A quality inhering in a bearer by virtue of the bearer's being phosphorylated to a lesser than normal extent, or less than fully.","definition_xrefs":["Wikipedia:http://en.wiktionary.org/wiki/hypophosphorylated"],"direct_ancestors":[{"relation_name":"decreased_in_magnitude_relative_to","term_name":"normal","termid":"PATO:0000461"},{"relation_name":"is_a","term_name":"phosphorylated","termid":"PATO:0002220"},{"relation_name":"is_a","term_name":"decreased object quality","termid":"PATO:0002303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"decreased phosphorylation","synonyms":[{"name":"hypophosporylated ","type":"exact"}],"termid":"PATO:0002222"}


id: PBO:0113292
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Probable catalytic subunit of Nem1p-Spo7p phosphatase holoenzyme; regulates nuclear/ER membrane association and activation of Pah1p, a phosphatidate phosphatase involved in the production of diacylglycerol DAG for lipid droplet biogenesis; regulates nuclear growth by controlling phospholipid biosynthesis; required for normal nuclear envelope morphology and sporulation; phosphatase activity of the Nem1p-Spo7p complex is inhibited by Ice2p; homolog of the human protein Dullard","termid":"PBO:0113292"}


id: PBO:0052505
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kelch like family member 18","termid":"PBO:0052505"}


id: PBO:0080989
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ZBTB20 antisense RNA 5","termid":"PBO:0080989"}


id: PBO:0068111
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 5S ribosomal pseudogene 418","termid":"PBO:0068111"}


id: PBO:0075053
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 116-16","termid":"PBO:0075053"}


id: PBO:0003531
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tspO homolog/ peripheral benzodiazepine receptor homolog, involved in the transport cytoplas/mitochondrial of haem (predicted)","termid":"PBO:0003531"}


id: GO:0048478
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that prevents the collapse of stalled replication forks.","definition_xrefs":["PMID:14560029","GOC:vw"],"gene_count":0,"genotype_count":0,"name":"obsolete replication fork protection (obsolete GO:0048478)","synonyms":[{"name":"replication fork maintenance","type":"broad"},{"name":"replication fork stabilization","type":"broad"}],"termid":"GO:0048478"}


id: MONDO:0016089
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Krabbe disease","termid":"MONDO:0009499"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0005244"},{"rel_name":"is_a","termid":"MONDO:0002525"},{"rel_name":"is_a","termid":"MONDO:0002561"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0002561","MONDO:0002525","MONDO:0005559","MONDO:0005328","MONDO:0005244","MONDO:0005066"],"is_obsolete":false,"name":"infantile Krabbe disease","secondary_identifiers":["MEDGEN:148270","Orphanet:206436","icd11.foundation:999546344","SCTID:238030005","NANDO:2201216","UMLS:C0751273","GARD:20343","NANDO:1200075"],"synonyms":[{"name":"Krabbe disease, classic form","type":"exact"},{"name":"Krabbe disease, early-onset","type":"exact"},{"name":"early onset Krabbe disease","type":"exact"},{"name":"early symptomatic Krabbe disease","type":"exact"},{"name":"early-onset Krabbe disease","type":"exact"},{"name":"infantile onset Krabbe disease","type":"exact"},{"name":"infantile-onset Krabbe disease","type":"exact"}],"termid":"MONDO:0016089","xrefs":{"Monarch":{"xref_id":"0016089"}}}


id: GO:0031438
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents, or reduces the frequency, rate or extent of mRNA cleavage.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of mRNA cleavage (obsolete GO:0031438)","synonyms":[{"name":"down regulation of mRNA cleavage","type":"exact"},{"name":"down-regulation of mRNA cleavage","type":"exact"},{"name":"downregulation of mRNA cleavage","type":"exact"},{"name":"inhibition of mRNA cleavage","type":"narrow"}],"termid":"GO:0031438"}


id: MONDO:0009784
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ophthalmoplegic neuromuscular disorder with abnormal mitochondria","secondary_identifiers":["MEDGEN:340508","OMIM:258470","MESH:C564925","UMLS:C1850302"],"synonyms":[{"name":"ophthalmoplegic neuromuscular disorder with abnormal mitochondria","type":"exact"}],"termid":"MONDO:0009784","xrefs":{"Monarch":{"xref_id":"0009784"}}}


id: PBO:0044905
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"desumoylating isopeptidase 2","termid":"PBO:0044905"}


id: GO:0090711
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: FMN + H2O = phosphate + riboflavin.","definition_xrefs":["PMID:16183635","RHEA:35587"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphatase activity","termid":"GO:0016791"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016788"}],"interesting_parent_ids":["GO:0016787","GO:0003824","GO:0016788","GO:0003674"],"is_obsolete":false,"name":"FMN hydrolase activity","secondary_identifiers":["EC:3.1.3.102","MetaCyc:RXN0-5187"],"synonyms":[{"name":"FMN phosphatase","type":"exact"}],"termid":"GO:0090711"}


id: FYPO:0005354
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which site-specific DNA replication termination at the RTS1 barrier in the mating type region is normal (i.e. indistinguishable from wild type).","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal cellular process during vegetative growth","termid":"FYPO:0001319"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0001312"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0001312","FYPO:0000002"],"is_obsolete":false,"name":"normal site-specific DNA replication termination at RTS1 barrier","synonyms":[{"name":"normal site-specific DNA replication termination at RTS1 barrier during mitotic cell cycle","type":"related"},{"name":"normal site-specific DNA replication termination at RTS1 barrier during vegetative growth","type":"exact"}],"termid":"FYPO:0005354"}


id: GO:0035454
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The component of a plastid inner membrane consisting of gene products and protein complexes that are loosely bound to its stromal surface, but not integrated into the hydrophobic region.","definition_xrefs":["GOC:bf","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extrinsic component of lumenal side of plastid thylakoid membrane","termid":"GO:0035450"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005737","GO:0005575"],"is_obsolete":false,"name":"extrinsic component of stromal side of plastid inner membrane","synonyms":[{"name":"extrinsic to stromal leaflet of plastid inner membrane","type":"exact"},{"name":"extrinsic to stromal side of plastid inner membrane","type":"narrow"},{"name":"peripheral to stromal side of plastid inner membrane","type":"exact"}],"termid":"GO:0035454"}


id: PBO:0084189
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Histone H2A; core histone protein required for chromatin assembly and chromosome function; one of two nearly identical (see also HTA1) subtypes; DNA damage-dependent phosphorylation by Mec1p facilitates DNA repair; acetylated by Nat4p","termid":"PBO:0084189"}


id: PBO:0046711
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eva-1 homolog A, regulator of programmed cell death","termid":"PBO:0046711"}


id: GO:0001980
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that modulates blood pressure by the detection of carbon dioxide levels in the brain stem. Increased levels activate the sympathetic vasoconstrictor mechanism increasing the force with which blood flows through the circulatory system.","definition_xrefs":["ISBN:0721643949","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nervous system process involved in regulation of systemic arterial blood pressure","termid":"GO:0001976"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of systemic arterial blood pressure by ischemic conditions","synonyms":[{"name":"CNS ischemic response","type":"related"},{"name":"ischemic control of blood pressure","type":"related"},{"name":"ischemic regulation of systemic arterial blood pressure","type":"exact"}],"termid":"GO:0001980"}


id: MONDO:0008084
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"neuropathy, congenital, with arthrogryposis multiplex","secondary_identifiers":["MEDGEN:320286","UMLS:C1834206","OMIM:162370","MESH:C535714"],"synonyms":[{"name":"congenital non-progressive peripheral neuropathy with arthrogryposis multiplex","type":"related"},{"name":"neuropathy, congenital, with arthrogryposis multiplex","type":"exact"}],"termid":"MONDO:0008084","xrefs":{"Monarch":{"xref_id":"0008084"}}}


id: GO:0003811
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Any of a set of activities involved in the complement cascade.","definition_xrefs":["GOC:jl"],"gene_count":0,"genotype_count":0,"name":"obsolete complement activity (obsolete GO:0003811)","synonyms":[{"name":"complement activity","type":"exact"}],"termid":"GO:0003811"}


id: MONDO:0013154
data:
  {"annotated_genes":["SJAG_04053","SJAG_04316"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88493,88494],"is_not":false,"summary":null,"term":"MONDO:0013154"}]},"cv_name":"mondo","definition":"An autosomal recessive muscular dystrophy caused by mutations in the POMT2 gene. It is associated with characteristic brain and eye malformations and profound mental retardation.","definition_xrefs":["NCIT:C126742"],"direct_ancestors":[{"relation_name":"is_a","term_name":"muscular dystrophy-dystroglycanopathy, type A","termid":"MONDO:0000171"},{"relation_name":"is_a","term_name":"muscle-eye-brain disease","termid":"MONDO:0018939"},{"relation_name":"is_a","term_name":"myopathy caused by variation in POMT2","termid":"MONDO:0700071"}],"gene_count":2,"genes_by_uniquename":{"SJAG_04053":null,"SJAG_04316":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0024322"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320","MONDO:0024322","MONDO:0005336","MONDO:0005066"],"is_obsolete":false,"name":"muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A2","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:613150","UMLS:C3150411","MEDGEN:461761","DOID:0111240","GARD:15624"],"synonyms":[{"name":"MDDGA2","type":"exact"},{"name":"Walker-Warburg syndrome or muscle-eye-brain disease, Pomt2-related","type":"exact"},{"name":"muscle-eye-brain-POMT2 related","type":"exact"},{"name":"muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies) type A, 2","type":"exact"},{"name":"muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 2","type":"exact"}],"termid":"MONDO:0013154","terms_by_termid":{"MONDO:0013154":null},"xrefs":{"Monarch":{"xref_id":"0013154"}}}


id: MONDO:0001961
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete glossopharyngeal neuralgia (obsolete MONDO:0001961)","termid":"MONDO:0001961","xrefs":{"Monarch":{"xref_id":"0001961"}}}


id: GO:0003404
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The developmental process pertaining to the formation and shaping of the optic vesicle. This process begins with the specific processes that contribute to the appearance of the vesicle and ends when the vesicle has evaginated. The optic vesicle is the evagination of neurectoderm that precedes formation of the optic cup.","definition_xrefs":["GOC:dph","GOC:ascb_2009","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"embryonic morphogenesis","termid":"GO:0048598"},{"relation_name":"is_a","term_name":"tissue morphogenesis","termid":"GO:0048729"},{"relation_name":"part_of","term_name":"embryonic camera-type eye morphogenesis","termid":"GO:0048596"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"optic vesicle morphogenesis","termid":"GO:0003404"}


id: PBO:0031339
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_thiabendazole","termid":"PBO:0031339"}


id: MONDO:0002174
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A membrane on the vitreal surface of the retina resulting from the proliferation of one or more of three retinal elements: (1) fibrous astrocytes; (2) fibrocytes; and (3) retinal pigment epithelial cells. Localized epiretinal membranes may occur at the posterior pole of the eye without clinical signs or may cause marked loss of vision as a result of covering, distorting, or detaching the fovea centralis. Epiretinal membranes may cause vascular leakage and secondary retinal edema. In younger individuals some membranes appear to be developmental in origin and occur in otherwise normal eyes. The majority occur in association with retinal holes, ocular concussions, retinal inflammation, or after ocular surgery. (Newell, Ophthalmology: Principles and Concepts, 7th ed, p291)","definition_xrefs":["MESH:D019773"],"direct_ancestors":[{"relation_name":"is_a","term_name":"degeneration of macula and posterior pole","termid":"MONDO:0002175"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"preretinal fibrosis","secondary_identifiers":["UMLS:C0339543","ICD9:362.56","SCTID:367649002","ICD9:362.89","MEDGEN:87388","DOID:2006"],"synonyms":[{"name":"cellophane maculopathy","type":"exact"},{"name":"macular puckering of retina","type":"exact"},{"name":"macular retinal puckering","type":"exact"}],"termid":"MONDO:0002174","xrefs":{"Monarch":{"xref_id":"0002174"}}}


id: MONDO:0800409
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ventricular fibrillation during myocardial infarction, susceptibility to","secondary_identifiers":["MEDGEN:866105","UMLS:C4017668"],"termid":"MONDO:0800409","xrefs":{"Monarch":{"xref_id":"0800409"}}}


id: GO:0060212
data:
  {"annotated_genes":["SJAG_02370"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[93529],"is_not":false,"summary":null,"term":"GO:0060212"}]},"cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of poly(A) tail shortening of a nuclear-transcribed mRNA. Poly(A) tail shortening is the decrease in length of the poly(A) tail of an mRNA from full length to an oligo(A) length.","definition_xrefs":["GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of nuclear-transcribed mRNA poly(A) tail shortening","termid":"GO:0060211"},{"relation_name":"is_a","term_name":"negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay","termid":"GO:1900152"},{"relation_name":"negatively_regulates","term_name":"nuclear-transcribed mRNA poly(A) tail shortening","termid":"GO:0000289"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02370":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0016071"},{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"regulates","termid":"GO:0016071"}],"interesting_parent_ids":["GO:0008150","GO:0010467","GO:0016071"],"is_obsolete":false,"name":"negative regulation of nuclear-transcribed mRNA poly(A) tail shortening","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"negative regulation of 3' to 5' mRNA deadenylation","type":"related"},{"name":"negative regulation of mRNA deadenylation","type":"related"},{"name":"negative regulation of nuclear mRNA poly(A) tail shortening","type":"related"}],"termid":"GO:0060212","terms_by_termid":{"GO:0060212":null}}


id: FYPO:0005300
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the kinetochore of a chromosome is decreased during mitotic spindle assembly checkpoint signaling.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to kinetochore during mitotic M phase","termid":"FYPO:0005215"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0000138","FYPO:0000002","FYPO:0005447"],"is_obsolete":false,"name":"decreased protein localization to kinetochore during mitotic spindle assembly checkpoint signaling","synonyms":[{"name":"decreased protein localisation to kinetochore during mitotic spindle assembly checkpoint signalling","type":"exact"},{"name":"decreased protein localization to kinetochore during mitotic cell cycle spindle assembly checkpoint signaling","type":"exact"},{"name":"decreased protein localization to kinetochore during signal transduction involved in mitotic spindle assembly checkpoint","type":"exact"},{"name":"decreased protein localization to kinetochore during spindle assembly checkpoint signaling during mitotic cell cycle","type":"exact"},{"name":"defective protein recruitment to unattached kinetochores","type":"exact"},{"name":"reduced protein localization to kinetochore during mitotic spindle assembly checkpoint signaling","type":"exact"}],"termid":"FYPO:0005300"}


id: PBO:0056511
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"muscleblind like splicing regulator 1","termid":"PBO:0056511"}


id: GO:0042775
data:
  {"annotated_genes":["SJAG_05629","SJAG_MIT13","SJAG_01490","SJAG_00601","SJAG_01671","SJAG_02398","SJAG_00976","SJAG_07006","SJAG_01355","SJAG_01077","SJAG_04152","SJAG_03490","SJAG_03920","SJAG_00260","SJAG_MIT20","SJAG_00080","SJAG_00755","SJAG_02504","SJAG_07007","SJAG_MIT03","SJAG_MIT04","SJAG_02646","SJAG_02744","SJAG_01763","SJAG_01190"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[73612,78236,80690,121084,117461,76029,116226,121062,121112,110245,62494],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0006123"},{"annotations":[114846],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0006120"},{"annotations":[118761,90653,115185,91027],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0006121"},{"annotations":[73951,121089,62460,77553,75539,78235,106001,77471,119696,115392],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0006122"}]},"cv_name":"biological_process","definition":"The transfer of electrons through a series of electron donors and acceptors, generating energy that is ultimately used for synthesis of ATP, as it occurs in the mitochondrial inner membrane or chloroplast thylakoid membrane.","definition_xrefs":["ISBN:0716731363","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ATP synthesis coupled electron transport","termid":"GO:0042773"}],"gene_count":25,"genes_by_uniquename":{"SJAG_00080":null,"SJAG_00260":null,"SJAG_00601":null,"SJAG_00755":null,"SJAG_00976":null,"SJAG_01077":null,"SJAG_01190":null,"SJAG_01355":null,"SJAG_01490":null,"SJAG_01671":null,"SJAG_01763":null,"SJAG_02398":null,"SJAG_02504":null,"SJAG_02646":null,"SJAG_02744":null,"SJAG_03490":null,"SJAG_03920":null,"SJAG_04152":null,"SJAG_05629":null,"SJAG_07006":null,"SJAG_07007":null,"SJAG_MIT03":null,"SJAG_MIT04":null,"SJAG_MIT13":null,"SJAG_MIT20":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0006091"},{"rel_name":"is_a","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0006091","GO:0008150"],"is_obsolete":false,"name":"mitochondrial ATP synthesis coupled electron transport","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"mitochondrial electron transport","type":"broad"},{"name":"organelle ATP synthesis coupled electron transport","type":"broad"}],"termid":"GO:0042775","terms_by_termid":{"GO:0006120":null,"GO:0006121":null,"GO:0006122":null,"GO:0006123":null}}


id: FYPO:0002960
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of one or more RNAs that are normally expressed during the meiotic cell cycle, and that contain determinant of selective removal (DSR) sequences, measured in a cell is higher than normal (i.e. higher than observed in wild-type cells during vegetative growth).","definition_xrefs":["PMID:23980030","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased level of meiotic gene mRNA during vegetative growth","termid":"FYPO:0002173"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001320","FYPO:0006551","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"increased level of DSR-containing meiotic gene mRNA during vegetative growth","synonyms":[{"name":"increased DSR-containing meiotic gene mRNA accumulation during vegetative growth","type":"related"},{"name":"increased level of DSR-containing meiosis gene mRNA during vegetative growth","type":"exact"},{"name":"increased level of DSR-containing meiotic cell cycle gene mRNA during vegetative growth","type":"related"},{"name":"increased level of DSR-containing meiotic gene RNA during vegetative growth","type":"exact"},{"name":"increased level of DSR-containing meiotic gene mRNA during mitotic cell cycle","type":"related"},{"name":"increased level of DSR-containing meiotic gene transcripts during vegetative growth","type":"exact"},{"name":"increased level of DSR-containing meiotic nuclear division gene mRNA during vegetative growth","type":"exact"}],"termid":"FYPO:0002960"}


id: GO:0090566
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the PEP-dependent, phosphoryl transfer-driven transport of substances across a membrane. The transport happens by catalysis of the reaction: protein S-phosphocysteine + N,N'-diacetylchitobiose(out) = protein cysteine + N,N'-diacetylchitobiose phosphate(in).","definition_xrefs":["PMID:10913119","GOC:am"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-phosphocysteine-sugar phosphotransferase activity","termid":"GO:0090563"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0016740","GO:0003824","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"protein-phosphocysteine-N,N'-diacetylchitobiose phosphotransferase system transporter activity","termid":"GO:0090566"}


id: PATO:0000507
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000507 disease sensitivity value (obsolete PATO:0000507)","termid":"PATO:0000507"}


id: GO:0071177
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex that consists of the intracellular domain of Notch3 (ICN3), the DNA-binding transcription factor RBP-Jkappa, and the transcriptional coactivator Mastermind-like-2 (MAML2); the complex is involved in transcriptional activation in response to Notch-mediated signaling.","definition_xrefs":["PMID:12370315"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"MAML2-RBP-Jkappa-ICN3 complex","synonyms":[{"name":"MAML2-RBP-Jkappa-Notch3 complex","type":"exact"}],"termid":"GO:0071177"}


id: GO:0045014
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A transcription regulation process in which the presence of glucose leads to a decrease in the frequency, rate, or extent of transcription of specific genes involved in the metabolism of other carbon sources. Carbon catabolite repression is a mechanism of genetic regulation which the accumulation of catabolites of one substance in the cell represses the formation of enzymes that contribute to the catabolism of other substances.","definition_xrefs":["ISBN:0198506732","PMID:11018147"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon catabolite repression of transcription","termid":"GO:0045013"},{"relation_name":"is_a","term_name":"negative regulation of transcription by glucose","termid":"GO:0061986"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0010467"},{"rel_name":"negatively_regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0006355"}],"interesting_parent_ids":["GO:0006355","GO:0010467","GO:0006351","GO:0008150"],"is_obsolete":false,"name":"carbon catabolite repression of transcription by glucose","synonyms":[{"name":"down regulation of transcription by glucose","type":"exact"},{"name":"down-regulation of transcription by glucose","type":"exact"},{"name":"downregulation of transcription by glucose","type":"exact"},{"name":"glucose effect","type":"exact"},{"name":"glucose repression","type":"exact"},{"name":"inhibition of transcription by glucose","type":"narrow"}],"termid":"GO:0045014"}


id: PBO:0073644
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sialic acid binding Ig like lectin 31, pseudogene","termid":"PBO:0073644"}


id: GO:0110111
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of animal organ morphogenesis.","definition_xrefs":["GOC:kmv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of developmental process","termid":"GO:0051093"},{"relation_name":"is_a","term_name":"negative regulation of multicellular organismal process","termid":"GO:0051241"},{"relation_name":"is_a","term_name":"regulation of animal organ morphogenesis","termid":"GO:2000027"},{"relation_name":"negatively_regulates","term_name":"animal organ morphogenesis","termid":"GO:0009887"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of animal organ morphogenesis","termid":"GO:0110111"}


id: MOD:00012
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts a source amino acid residue to an L-asparagine.","definition_xrefs":["PubMed:9789001","RESID:AA0003","PubMed:15736973","PubMed:5681232","DeltaMass:0","ChEBI:29956","PubMed:6692818"],"direct_ancestors":[{"relation_name":"is_a","term_name":"modified residue that can arise from different natural residues","termid":"MOD:00859"},{"relation_name":"is_a","term_name":"natural, standard, encoded residue","termid":"MOD:01441"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-asparagine residue","synonyms":[{"name":"(2S)-2-amino-4-butanediamic acid","type":"exact"},{"name":"2,4-bis(azanyl)-4-oxobutanoic acid","type":"exact"},{"name":"2,4-diamino-4-oxobutanoic acid","type":"exact"},{"name":"2-amino-3-carbamoylpropanoic acid","type":"exact"},{"name":"2-amino-4-butanediamic acid","type":"exact"},{"name":"2-aminosuccinamic acid","type":"exact"},{"name":"2-aminosuccinic acid 4-amide","type":"exact"},{"name":"Asn","type":"exact"},{"name":"L-asparagine","type":"exact"},{"name":"alpha-amino-beta-carbamylpropionic acid","type":"exact"},{"name":"alpha-aminosuccinamic acid","type":"exact"},{"name":"aspartic acid 4-amide","type":"exact"},{"name":"aspartic acid beta-amide","type":"exact"},{"name":"beta-asparagine","type":"exact"}],"termid":"MOD:00012"}


id: PBO:0082645
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of RNA polymerase transcription factor TFIIH holoenzyme; acts as dsDNA-dependent translocase in context of TFIIH, unwinds DNA strands during initiation and promotes transcription start site (TSS) scanning; has DNA-dependent ATPase/helicase activity; interacts functionally with TFIIB, has roles in TSS selection and gene looping to juxtapose initiation and termination regions; involved in DNA repair; relocalizes to cytosol under hypoxia; homolog of human ERCC3","termid":"PBO:0082645"}


id: PBO:0109609
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 90 member A24","termid":"PBO:0109609"}


id: MONDO:0010783
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete Alzheimer disease, susceptibility to, mitochondrial (obsolete MONDO:0010783)","termid":"MONDO:0010783","xrefs":{"Monarch":{"xref_id":"0010783"}}}


id: PBO:0055235
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2662","termid":"PBO:0055235"}


id: GO:0004560
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: an alpha-L-fucoside + H2O = an alcohol + L-fucose.","definition_xrefs":["EC:3.2.1.51"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fucosidase activity","termid":"GO:0015928"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016787","GO:0016798","GO:0003674"],"is_obsolete":false,"name":"alpha-L-fucosidase activity","secondary_identifiers":["RHEA:12288","MetaCyc:ALPHA-L-FUCOSIDASE-RXN","Reactome:R-HSA-5693807"],"synonyms":[{"name":"alpha-L-fucoside fucohydrolase activity","type":"related"},{"name":"alpha-fucosidase activity","type":"related"}],"termid":"GO:0004560"}


id: MONDO:0008932
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"premature centromere division","secondary_identifiers":["OMIM:212790","UMLS:C1859308","MEDGEN:349138"],"synonyms":[{"name":"PCD","type":"exact"},{"name":"X-chromosome centromere peculiarity","type":"related"},{"name":"premature centromere division","type":"exact"}],"termid":"MONDO:0008932","xrefs":{"Monarch":{"xref_id":"0008932"}}}


id: PBO:0006177
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-requires_sequence_feature","termid":"PBO:0006177"}


id: GO:0006015
data:
  {"annotated_genes":["SJAG_04882","SJAG_04970","SJAG_03811"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[64395,74198,75647],"is_not":false,"summary":null,"term":"GO:0006015"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of 5-phosphoribose 1-diphosphate, also known as 5-phosphoribosyl-1-pyrophosphate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribose phosphate biosynthetic process","termid":"GO:0046390"},{"relation_name":"is_a","term_name":"5-phosphoribose 1-diphosphate metabolic process","termid":"GO:0046391"}],"gene_count":3,"genes_by_uniquename":{"SJAG_03811":null,"SJAG_04882":null,"SJAG_04970":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"5-phosphoribose 1-diphosphate biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000117":null},"secondary_identifiers":["Reactome:R-HSA-73843"],"synonyms":[{"name":"5-phosphoribose 1-diphosphate anabolism","type":"exact"},{"name":"5-phosphoribose 1-diphosphate biosynthesis","type":"exact"},{"name":"5-phosphoribose 1-diphosphate formation","type":"exact"},{"name":"5-phosphoribose 1-diphosphate synthesis","type":"exact"},{"name":"5-phosphoribosyl-1-pyrophosphate biosynthesis","type":"exact"},{"name":"5-phosphoribosyl-1-pyrophosphate biosynthetic process","type":"exact"},{"name":"PRPP biosynthetic process","type":"exact"}],"termid":"GO:0006015","terms_by_termid":{"GO:0006015":null}}


id: GO:1904600
data:
  {"annotated_genes":["SJAG_01943","SJAG_01894","SJAG_02864","SJAG_01993","SJAG_02700","SJAG_02989"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[90092,94375,100182,100794,100877,116321],"is_not":false,"summary":null,"term":"GO:1904600"}]},"cv_name":"biological_process","definition":"The aggregation, arrangement and bonding together of a set of components to form an actin fusion focus.","definition_xrefs":["GOC:TermGenie","PMID:25825517","GO_REF:0000079"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular component assembly involved in morphogenesis","termid":"GO:0010927"},{"relation_name":"is_a","term_name":"actin cytoskeleton organization","termid":"GO:0030036"},{"relation_name":"part_of","term_name":"mating projection formation","termid":"GO:0031382"}],"gene_count":6,"genes_by_uniquename":{"SJAG_01894":null,"SJAG_01943":null,"SJAG_01993":null,"SJAG_02700":null,"SJAG_02864":null,"SJAG_02989":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0007010"},{"rel_name":"part_of","termid":"GO:0000747"},{"rel_name":"is_a","termid":"GO:0030036"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0007010","GO:0000747","GO:0008150","GO:0044085","GO:0030036"],"is_obsolete":false,"name":"mating projection actin fusion focus assembly","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"actin fusion focus assembly","type":"broad"},{"name":"actin fusion focus formation","type":"exact"}],"termid":"GO:1904600","terms_by_termid":{"GO:1904600":null}}


id: GO:0035039
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The conversion at fertilization of the inactive sperm nucleus into a male pronucleus with its chromosomes processed for the first zygotic division.","definition_xrefs":["GOC:bf","PMID:11735001"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleus organization","termid":"GO:0006997"},{"relation_name":"is_a","term_name":"organelle assembly","termid":"GO:0070925"},{"relation_name":"part_of","term_name":"single fertilization","termid":"GO:0007338"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0044085","GO:0008150"],"is_obsolete":false,"name":"male pronucleus assembly","synonyms":[{"name":"male pronucleus formation","type":"related"}],"termid":"GO:0035039"}


id: GO:0002418
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"An immune system process that functions in the response of an organism to a tumor cell.","definition_xrefs":["PMID:16730260","GOC:add","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to tumor cell","termid":"GO:0002347"},{"relation_name":"is_a","term_name":"immune response","termid":"GO:0006955"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"immune response to tumor cell","termid":"GO:0002418"}


id: GO:0004741
data:
  {"annotated_genes":["SJAG_03310"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[77943],"is_not":false,"summary":null,"term":"GO:0004741"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: O-phospho-L-seryl-[pyruvate dehydrogenase E1 alpha subunit] + H2O = L-seryl-[pyruvate dehydrogenase E1 alpha subunit] + phosphate.","definition_xrefs":["EC:3.1.3.43"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein serine/threonine phosphatase activity","termid":"GO:0004722"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03310":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016788"},{"rel_name":"is_a","termid":"GO:0004721"},{"rel_name":"is_a","termid":"GO:0140096"}],"interesting_parent_ids":["GO:0016788","GO:0016787","GO:0004721","GO:0003674","GO:0003824","GO:0140096"],"is_obsolete":false,"name":"[pyruvate dehydrogenase (acetyl-transferring)]-phosphatase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:3.1.3.43-RXN","Reactome:R-HSA-204169","GO:0019906","RHEA:12669"],"synonyms":[{"name":"[pyruvate dehydrogenase (lipoamide)] phosphatase activity","type":"exact"},{"name":"[pyruvate dehydrogenase (lipoamide)] phosphatase, intrinsic catalyst activity","type":"exact"},{"name":"pyruvate dehydrogenase (lipoamide) phosphatase activity","type":"exact"}],"termid":"GO:0004741","terms_by_termid":{"GO:0004741":null}}


id: MONDO:0006875
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Abnormally high intraocular pressure.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hypertensive disorder","termid":"MONDO:0005044"},{"relation_name":"is_a","term_name":"eye disorder","termid":"MONDO:0005328"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"ocular hypertension","secondary_identifiers":["DOID:9282","MESH:D009798","icd11.foundation:535283437","ICD9:365.04","EFO:1001069","MedDRA:10030043","MEDGEN:10423","SCTID:4210003","UMLS:C0028840"],"termid":"MONDO:0006875","xrefs":{"Monarch":{"xref_id":"0006875"}}}


id: PBO:0056306
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitogen-activated protein kinase kinase 2","termid":"PBO:0056306"}


id: GO:0015503
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: K+(in) + H+(out) = K+(out) + H+(in), where glutathione maintains the closed state.","definition_xrefs":["TC:2.A.37.1.2","PMID:11053405","TC:2.A.37.1.1"],"direct_ancestors":[{"relation_name":"is_a","term_name":"solute:potassium antiporter activity","termid":"GO:0022821"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"glutathione-regulated potassium exporter activity","termid":"GO:0015503"}


id: PBO:0041837
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cancer susceptibility 17","termid":"PBO:0041837"}


id: PBO:0072810
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sterile alpha motif domain containing 5","termid":"PBO:0072810"}


id: PBO:0081392
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 232","termid":"PBO:0081392"}


id: GO:1900356
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of methanofuran metabolic process.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of metabolic process","termid":"GO:0009893"},{"relation_name":"is_a","term_name":"regulation of methanofuran metabolic process","termid":"GO:1900354"},{"relation_name":"positively_regulates","term_name":"methanofuran metabolic process","termid":"GO:2001119"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of methanofuran metabolic process","synonyms":[{"name":"activation of methanofuran metabolic process","type":"narrow"},{"name":"activation of methanofuran metabolism","type":"exact"},{"name":"positive regulation of methanofuran metabolism","type":"exact"},{"name":"up regulation of methanofuran metabolic process","type":"exact"},{"name":"up regulation of methanofuran metabolism","type":"exact"},{"name":"up-regulation of methanofuran metabolic process","type":"exact"},{"name":"up-regulation of methanofuran metabolism","type":"exact"},{"name":"upregulation of methanofuran metabolic process","type":"exact"},{"name":"upregulation of methanofuran metabolism","type":"exact"}],"termid":"GO:1900356"}


id: GO:1904528
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of microtubule binding.","definition_xrefs":["PMID:24520051","GOC:TermGenie","GO_REF:0000059","GOC:als"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of microtubule binding (obsolete GO:1904528)","synonyms":[{"name":"activation of microtubule binding","type":"narrow"},{"name":"activation of microtubule severing activity","type":"related"},{"name":"activation of microtubule/chromatin interaction","type":"related"},{"name":"positive regulation of microtubule severing activity","type":"related"},{"name":"positive regulation of microtubule/chromatin interaction","type":"related"},{"name":"up regulation of microtubule binding","type":"exact"},{"name":"up regulation of microtubule severing activity","type":"related"},{"name":"up regulation of microtubule/chromatin interaction","type":"related"},{"name":"up-regulation of microtubule binding","type":"exact"},{"name":"up-regulation of microtubule severing activity","type":"related"},{"name":"up-regulation of microtubule/chromatin interaction","type":"related"},{"name":"upregulation of microtubule binding","type":"exact"},{"name":"upregulation of microtubule severing activity","type":"related"},{"name":"upregulation of microtubule/chromatin interaction","type":"related"}],"termid":"GO:1904528"}


id: PBO:0089146
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"sterol transfer protein Osh41","termid":"PBO:0089146"}


id: GO:1902292
data:
  {"annotated_genes":["SJAG_04995","SJAG_03160","SJAG_00874","SJAG_01354","SJAG_04879","SJAG_01823","SJAG_04210","SJAG_01210","SJAG_02074","SJAG_03451","SJAG_02607","SJAG_05239","SJAG_04671","SJAG_00857","SJAG_02348","SJAG_04341","SJAG_03048","SJAG_03695","SJAG_03438","SJAG_01762","SJAG_02667","SJAG_00884","SJAG_02908","SJAG_00399","SJAG_02162","SJAG_03720","SJAG_02172","SJAG_00364"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[109299,111912,117405,115557],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0140529"},{"annotations":[105241],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0140530"},{"annotations":[109193,113368,112535,63791,119348,109302,117409,101256,76514,101319,93820,57178,96426,115146,75220,72724],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902975"},{"annotations":[104286,99668,110860],"is_not":false,"rel_names":["regulates","negatively_regulates"],"summary":null,"term":"GO:1903467"},{"annotations":[104878],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1902315"},{"annotations":[119289,114022,105244],"is_not":false,"rel_names":["positively_regulates","regulates"],"summary":null,"term":"GO:1903468"},{"annotations":[90902,118236,104292,108569],"is_not":false,"rel_names":["regulates","positively_regulates"],"summary":null,"term":"GO:1904514"}]},"cv_name":"biological_process","definition":"Any DNA replication initiation that is involved in cell cycle DNA replication.","definition_xrefs":["GOC:TermGenie","GOC:mtg_cell_cycle"],"direct_ancestors":[{"relation_name":"is_a","term_name":"DNA replication initiation","termid":"GO:0006270"},{"relation_name":"is_a","term_name":"cell cycle process","termid":"GO:0022402"},{"relation_name":"part_of","term_name":"cell cycle DNA replication","termid":"GO:0044786"}],"gene_count":28,"genes_by_uniquename":{"SJAG_00364":null,"SJAG_00399":null,"SJAG_00857":null,"SJAG_00874":null,"SJAG_00884":null,"SJAG_01210":null,"SJAG_01354":null,"SJAG_01762":null,"SJAG_01823":null,"SJAG_02074":null,"SJAG_02162":null,"SJAG_02172":null,"SJAG_02348":null,"SJAG_02607":null,"SJAG_02667":null,"SJAG_02908":null,"SJAG_03048":null,"SJAG_03160":null,"SJAG_03438":null,"SJAG_03451":null,"SJAG_03695":null,"SJAG_03720":null,"SJAG_04210":null,"SJAG_04341":null,"SJAG_04671":null,"SJAG_04879":null,"SJAG_04995":null,"SJAG_05239":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006259"},{"rel_name":"part_of","termid":"GO:0006259"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"part_of","termid":"GO:0006260"}],"interesting_parent_ids":["GO:0008150","GO:0006260","GO:0006259","GO:0007049"],"is_obsolete":false,"name":"cell cycle DNA replication initiation","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"DNA endoreduplication initiation involved in cell cycle DNA replication","type":"narrow"},{"name":"DNA re-replication initiation involved in cell cycle DNA replication","type":"narrow"},{"name":"DNA replication initiation involved in cell cycle DNA replication","type":"exact"},{"name":"DNA-dependent DNA replication initiation involved in cell cycle DNA replication","type":"exact"}],"termid":"GO:1902292","terms_by_termid":{"GO:0140529":null,"GO:0140530":null,"GO:1902315":null,"GO:1902975":null,"GO:1903467":null,"GO:1903468":null,"GO:1904514":null}}


id: MONDO:0004876
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Prolonged dysfunction of the myocardium after a brief episode of severe ischemia, with gradual return of contractile activity.","definition_xrefs":["MESH:D017682"],"direct_ancestors":[{"relation_name":"is_a","term_name":"myocardial infarction","termid":"MONDO:0005068"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"myocardial stunning","secondary_identifiers":["MEDGEN:61526","UMLS:C0206146","DOID:9767"],"termid":"MONDO:0004876","xrefs":{"Monarch":{"xref_id":"0004876"}}}


id: PBO:0042447
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CDC42 effector protein 5","termid":"PBO:0042447"}


id: MOD:00345
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cross-links an L-cysteine residue and an L-phenylalanine residue by a thioether bond to form 2-(S-L-cysteinyl)-L-phenylalanine.","definition_xrefs":["RESID:AA0340","PubMed:3936839","PubMed:12696888"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-carbon thioether crosslinked residues","termid":"MOD:01992"},{"relation_name":"is_a","term_name":"crosslinked L-phenylalanine residue","termid":"MOD:02053"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"2-(S-L-cysteinyl)-L-phenylalanine","synonyms":[{"name":"(2R)-2-amino-2-[(2R)-2-amino-2-carboxyethyl]sulfanyl-3-phenylpropanoic acid","type":"exact"},{"name":"(2R,5R)-2,5-diamino-3-thia-2-phenylmethylhexanedioic acid","type":"exact"},{"name":"2-(L-cystein-S-yl)-L-phenylalanine","type":"exact"},{"name":"CROSSLNK 2-cysteinyl-L-phenylalanine (Cys-Phe)","type":"exact"},{"name":"alpha-(L-cystein-S-yl)-L-phenylalanine","type":"exact"}],"termid":"MOD:00345"}


id: GO:0097201
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that decreases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).","definition_xrefs":["PMID:11027285","PMID:15575969","PMID:18627600","GOC:rn","PMID:16556235","PMID:18086556"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of transcription from RNA polymerase II promoter in response to stress (obsolete GO:0097201)","termid":"GO:0097201"}


id: MONDO:0002604
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign or malignant mesenchymal neoplasm arising from the perivascular cells of the connective and soft tissues. It is characterized by the presence of pericytes that grow in a circumferential pattern around vessels.","definition_xrefs":["NCIT:C6528"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesenchymal cell neoplasm","termid":"MONDO:0002616"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pericytic neoplasm","secondary_identifiers":["DOID:3316","UMLS:C1335392","MEDGEN:235473"],"synonyms":[{"name":"Pericytic neoplasm","type":"exact"},{"name":"Pericytic tumor","type":"exact"},{"name":"Pericytic tumour","type":"exact"},{"name":"malignant perivascular cancer","type":"narrow"},{"name":"perivascular neoplasm","type":"exact"},{"name":"perivascular tumor","type":"exact"},{"name":"perivascular tumour","type":"exact"}],"termid":"MONDO:0002604","xrefs":{"Monarch":{"xref_id":"0002604"}}}


id: GO:0042608
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a T cell receptor, the antigen-recognizing receptor on the surface of T cells.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signaling receptor binding","termid":"GO:0005102"},{"relation_name":"is_a","term_name":"protein-containing complex binding","termid":"GO:0044877"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"T cell receptor binding","synonyms":[{"name":"T lymphocyte receptor binding","type":"exact"},{"name":"T-cell receptor binding","type":"exact"},{"name":"T-lymphocyte receptor binding","type":"exact"},{"name":"TCR binding","type":"exact"}],"termid":"GO:0042608"}


id: PBO:0064876
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PPP1R35 antisense RNA 1","termid":"PBO:0064876"}


id: PBO:0055579
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3015","termid":"PBO:0055579"}


id: MONDO:0017193
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-variable intellectual disability syndrome","termid":"MONDO:0015160"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"symptomatic form of Coffin-Lowry syndrome in female carriers","secondary_identifiers":["GARD:21057","MEDGEN:1814465","Orphanet:276630","UMLS:C5680787"],"termid":"MONDO:0017193","xrefs":{"Monarch":{"xref_id":"0017193"}}}


id: GO:1904533
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of telomeric loop disassembly.","definition_xrefs":["GOC:BHF","GO_REF:0000058","GOC:BHF_telomere","GOC:TermGenie","GOC:nc","PMID:22579284"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of telomere maintenance","termid":"GO:0032204"},{"relation_name":"regulates","term_name":"telomeric loop disassembly","termid":"GO:0090657"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006259"},{"rel_name":"regulates","termid":"GO:0032200"}],"interesting_parent_ids":["GO:0006259","GO:0032200","GO:0008150"],"is_obsolete":false,"name":"regulation of telomeric loop disassembly","synonyms":[{"name":"regulation of T loop disassembly","type":"exact"}],"termid":"GO:1904533"}


id: PBO:0048196
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GA binding protein transcription factor subunit beta 2","termid":"PBO:0048196"}


id: PBO:0084050
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"GTPase-activating protein for Gpa1p; regulates desensitization to alpha factor pheromone; also required to prevent receptor-independent signaling of the mating pathway; member of the RGS (regulator of G-protein signaling) family","termid":"PBO:0084050"}


id: PBO:0002043
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"conserved eukaryotic mitochondrial protein (predicted)","termid":"PBO:0002043"}


id: GO:0015103
data:
  {"annotated_genes":["SJAG_04241","SJAG_00612","SJAG_00671","SJAG_01183","SJAG_01168","SJAG_01033","SJAG_00547","SJAG_00233","SJAG_01973","SJAG_02463","SJAG_01941","SJAG_03401","SJAG_01059"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[112945],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046715"},{"annotations":[104778],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140987"},{"annotations":[71992],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0080139"},{"annotations":[72175],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005254"},{"annotations":[80918],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:1903425"},{"annotations":[118512,74006,72639,114719,80676],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005315"},{"annotations":[75189],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015379"},{"annotations":[67081],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008271"},{"annotations":[57596],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005452"},{"annotations":[75660,90251],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015116"},{"annotations":[90252],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015117"}]},"cv_name":"molecular_function","definition":"Enables the transfer of inorganic anions from one side of a membrane to the other. Inorganic anions are atoms or small molecules with a negative charge which do not contain carbon in covalent linkage.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inorganic molecular entity transmembrane transporter activity","termid":"GO:0015318"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00233":null,"SJAG_00547":null,"SJAG_00612":null,"SJAG_00671":null,"SJAG_01033":null,"SJAG_01059":null,"SJAG_01168":null,"SJAG_01183":null,"SJAG_01941":null,"SJAG_01973":null,"SJAG_02463":null,"SJAG_03401":null,"SJAG_04241":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0005215","GO:0003674","GO:0022857"],"is_obsolete":false,"name":"inorganic anion transmembrane transporter activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0015103","terms_by_termid":{"GO:0005254":null,"GO:0005315":null,"GO:0005452":null,"GO:0008271":null,"GO:0015116":null,"GO:0015117":null,"GO:0015379":null,"GO:0046715":null,"GO:0080139":null,"GO:0140987":null,"GO:1903425":null}}


id: PBO:0082482
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cardiolipin synthase; produces cardiolipin, which is a phospholipid of the mitochondrial inner membrane that is required for normal mitochondrial membrane potential and function and for correct integration of membrane-multispanning proteins into the mitochondrial outer membrane; required to maintain tubular mitochondrial morphology and functions in mitochondrial fusion; also required for normal vacuolar ion homeostasis","termid":"PBO:0082482"}


id: GO:0018394
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The acetylation of peptidyl-lysine.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein acetylation","termid":"GO:0006473"},{"relation_name":"is_a","term_name":"peptidyl-lysine modification","termid":"GO:0018205"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"peptidyl-lysine acetylation","termid":"GO:0018394"}


id: GO:0051640
data:
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id: PATO:0000500
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A phase which occurs earlier than the natural start time.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phase","termid":"PATO:0000083"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"advanced phase","termid":"PATO:0000500"}


id: PBO:0047624
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FIGNL2 divergent transcript","termid":"PBO:0047624"}


id: FYECO:0000154
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which ethanolamine was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ ethanolamine","synonyms":[{"name":"2-aminoethanol added","type":"exact"},{"name":"ETA added","type":"exact"},{"name":"MEA added","type":"exact"},{"name":"monoethanolamine added","type":"exact"}],"termid":"FYECO:0000154"}


id: PBO:0018024
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TFIIH associated cyclin-dependent protein kinase Mcs6","termid":"PBO:0018024"}


id: PBO:0062800
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oxysterol binding protein","termid":"PBO:0062800"}


id: PR:O13290
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A cytoplasmic dynein 1 heavy chain 1 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO01915"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynein heavy chain, cytoplasmic (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC1093.06c","secondary_identifiers":["UniProtKB:O13290"],"synonyms":[{"name":"DYHC (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-DYNC1H1","type":"exact"},{"name":"dynein heavy chain, cytosolic (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O13290"}


id: PBO:0061550
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"5'-nucleotidase, cytosolic IIIA","termid":"PBO:0061550"}


id: PBO:0109387
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"testis expressed transcript, Y-linked 17B","termid":"PBO:0109387"}


id: PBO:0078708
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Leu (anticodon CAG) 1-3","termid":"PBO:0078708"}


id: PBO:0054562
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1964","termid":"PBO:0054562"}


id: FYPO:0002588
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of nickel ions than normal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002682"}],"interesting_parent_ids":["FYPO:0002682","FYPO:0005447","FYPO:0000139","FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"resistance to nickel","synonyms":[{"name":"resistance to nickel during mitotic cell cycle","type":"related"},{"name":"resistance to nickel during vegetative growth","type":"exact"},{"name":"resistance to nickel ion","type":"exact"},{"name":"resistance to nickel ions","type":"exact"},{"name":"resistant to nickel","type":"exact"}],"termid":"FYPO:0002588"}


id: MOD:01380
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cross-links an L-cysteine residue and an L-tryptophan residue by a thioether bond to form 2'-(S-L-cysteinyl)-6'-hydroxy-L-tryptophan sulfoxide.","definition_xrefs":["PubMed:4865716","PubMed:11805306","PubMed:18552824","PubMed:363352","RESID:AA0451"],"direct_ancestors":[{"relation_name":"is_a","term_name":"thioether crosslinked residues","termid":"MOD:00687"},{"relation_name":"is_a","term_name":"crosslinked L-tryptophan residue","termid":"MOD:02057"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"2'-(S-L-cysteinyl)-6'-hydroxy-L-tryptophan sulfoxide","synonyms":[{"name":"2'-(S-L-cysteinyl)-6'-hydroxy-L-tryptophan sulfoxide","type":"exact"},{"name":"2-((2R)-2-amino-2carboxyethyl)sulfinyl-3-((2S)-2-amino-2-carboxyethyl)-1H-indole","type":"exact"},{"name":"6'-hydroxy-S-oxo-tryptathionine","type":"exact"},{"name":"CROSSLNK 2'-cysteinyl-6'-hydroxytryptophan sulfoxide (Trp-Cys)","type":"exact"}],"termid":"MOD:01380"}


id: GO:0006780
data:
  {"annotated_genes":["SJAG_05283"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[76708],"is_not":false,"summary":null,"term":"GO:0006780"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of uroporphyrinogen III.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"porphyrin-containing compound biosynthetic process","termid":"GO:0006779"},{"relation_name":"is_a","term_name":"carboxylic acid biosynthetic process","termid":"GO:0046394"},{"relation_name":"is_a","term_name":"uroporphyrinogen III metabolic process","termid":"GO:0046502"}],"gene_count":1,"genes_by_uniquename":{"SJAG_05283":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0033013"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0033013","GO:0044281"],"is_obsolete":false,"name":"uroporphyrinogen III biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"uroporphyrinogen III anabolism","type":"exact"},{"name":"uroporphyrinogen III biosynthesis","type":"exact"},{"name":"uroporphyrinogen III formation","type":"exact"},{"name":"uroporphyrinogen III synthesis","type":"exact"}],"termid":"GO:0006780","terms_by_termid":{"GO:0006780":null}}


id: PBO:0027918
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_myriocin_during_mating","termid":"PBO:0027918"}


id: GO:0018402
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Chondroitin sulfate components are covalently linked to a core glycoprotein via O-glycosidic linkages between xylose and serine residues.","definition_xrefs":["RESID:AA0208"],"gene_count":0,"genotype_count":0,"name":"obsolete protein-chondroitin sulfate linkage via chondroitin sulfate D-glucuronyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine (obsolete GO:0018402)","synonyms":[{"name":"protein-chondroitin sulphate linkage via chondroitin sulphate D-glucuronyl-D-galactosyl-D-galactosyl-D-xylosyl-L-serine","type":"exact"}],"termid":"GO:0018402"}


id: GO:0140316
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binding directly to sorting signals in the cytosolic tails of transmembrane cargos (or transmembrane cargo receptors serving as recognition interfaces for lumenal cargos), to concentrate them into vesicles or tubules for transport via intracellular vesicular transport or the secretory pathway.","definition_xrefs":["PMID:25795254"],"gene_count":0,"genotype_count":0,"name":"obsolete vesicular transport adaptor activity (obsolete GO:0140316)","termid":"GO:0140316"}


id: PBO:0111682
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"esterase/lipase implicated in lipid catobolism or detoxification","termid":"PBO:0111682"}


id: FYPO:0005269
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a protein kinase activity is decreased during a cellular response to hydrogen peroxide.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein kinase activity","termid":"FYPO:0001382"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0001985","FYPO:0000661","FYPO:0000707","FYPO:0000654"],"is_obsolete":false,"name":"decreased protein kinase activity during cellular response to hydrogen peroxide","synonyms":[{"name":"decreased protein kinase activity during cellular response to H2O2","type":"exact"},{"name":"reduced protein kinase activity during cellular response to H2O2","type":"exact"},{"name":"reduced protein kinase activity during cellular response to hydrogen peroxide","type":"exact"}],"termid":"FYPO:0005269"}


id: PBO:0054056
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1398","termid":"PBO:0054056"}


id: GO:0000373
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The splicing of Group II introns. This occurs by a ribozymic mechanism where the intron sequence forms a distinct 3D structure, characteristic of Group II introns and containing splice site consensus sequences, that is involved in catalyzing the splicing reactions, though protein factors are also required in vivo. Splicing occurs by a series of two transesterification reactions (mechanistically similar to those for splicing of nuclear mRNAs) initiated by a bulged adenosine residue within the intron sequence as the initiating nucleophile. The intron is excised as a lariat.","definition_xrefs":["PMID:11377794","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA splicing, via transesterification reactions with bulged adenosine as nucleophile","termid":"GO:0000377"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"Group II intron splicing","synonyms":[{"name":"mRNA splicing","type":"related"}],"termid":"GO:0000373"}


id: GO:0031753
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to an endothelial differentiation G protein-coupled receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor binding","termid":"GO:0001664"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"endothelial differentiation G protein-coupled receptor binding","synonyms":[{"name":"endothelial differentiation G-protein coupled receptor binding","type":"exact"},{"name":"endothelial differentiation G-protein coupled receptor ligand","type":"narrow"}],"termid":"GO:0031753"}


id: GO:0048721
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of the clypeus are generated and organized.","definition_xrefs":["GOC:rc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"post-embryonic animal morphogenesis","termid":"GO:0009886"},{"relation_name":"part_of","term_name":"clypeo-labral disc morphogenesis","termid":"GO:0007453"},{"relation_name":"part_of","term_name":"clypeus development","termid":"GO:0048723"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"clypeus morphogenesis","termid":"GO:0048721"}


id: MONDO:0018637
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare autosomal recessive disease characterized by the buildup in the blood of fat particles called chylomicrons (chylomicronemia), severe hypertriglyceridemia, and the risk of recurrent and potentially fatal pancreatitis and other complications. It is caused by mutations in the gene encoding LPL or, less frequently, by mutations in genes encoding other proteins necessary for LPL function.","definition_xrefs":["PMID:25470695","PMID:22239554"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"familial chylomicronemia syndrome","secondary_identifiers":["UMLS:C5442313","MEDGEN:1778100","GARD:6414","DOID:0111417","Orphanet:444490"],"termid":"MONDO:0018637","xrefs":{"Monarch":{"xref_id":"0018637"}}}


id: MONDO:0011889
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Autosomal dominant Charcot-Marie-Tooth disease type 2I (CMT2I) is a form of axonal Charcot-Marie-Tooth disease, a peripheral sensorimotor neuropathy, characterized by a late onset with severe sensory loss (paresthesia and hypoesthesia) associated with distal weakness, mainly of the legs, and absent or reduced deep tendon reflexes.","definition_xrefs":["Orphanet:99942"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Charcot-Marie-Tooth disease dominant intermediate D","termid":"MONDO:0011909"},{"relation_name":"is_a","term_name":"Charcot-Marie-Tooth disease type 2","termid":"MONDO:0018993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0000426"},{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244","MONDO:0000426"],"is_obsolete":false,"name":"Charcot-Marie-Tooth disease type 2I","secondary_identifiers":["OMIM:607677","icd11.foundation:1858507973","MEDGEN:854756","DOID:0110158","GARD:9197","SCTID:717013009","UMLS:C3888087"],"synonyms":[{"name":"CMT 2I","type":"related"},{"name":"CMT2I","type":"exact"},{"name":"Charcot Marie Tooth disease type 2I","type":"related"},{"name":"Charcot-Marie-Tooth disease, axonal, type 2I","type":"related"},{"name":"Charcot-Marie-Tooth disease, type 2I","type":"exact"},{"name":"Charcot-Marie-Tooth neuropathy type 2I","type":"exact"},{"name":"Charcot-Marie-Tooth neuropathy, type 2I","type":"related"},{"name":"autosomal dominant Charcot-Marie-Tooth disease type 2I","type":"related"}],"termid":"MONDO:0011889","xrefs":{"Monarch":{"xref_id":"0011889"}}}


id: PBO:0001847
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Silencing DEfective","termid":"PBO:0001847"}


id: MONDO:0006346
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An adenocarcinoma arising from the pancreas. It is characterized by the presence of relatively uniform malignant cells which form acinar patterns. It usually occurs during adulthood. Signs and symptoms include abdominal pain, weight loss, nausea, and diarrhea. It may metastasize to regional lymph nodes and the liver. A minority of patients develop lipase hypersecretion syndrome. This syndrome may be seen in patients with liver metastases and it is characterized by excessive secretion of lipase in the serum, polyarthralgia, and subcutaneous fat necrosis.","definition_xrefs":["NCIT:C7977"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acinar cell carcinoma","termid":"MONDO:0004965"},{"relation_name":"is_a","term_name":"pancreatic adenocarcinoma","termid":"MONDO:0006047"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992"],"is_obsolete":false,"name":"pancreatic acinar cell carcinoma","secondary_identifiers":["GARD:21777","UMLS:C0279661","MEDGEN:83540","DOID:5742","EFO:1000439","Orphanet:424046","ONCOTREE:PAAC"],"synonyms":[{"name":"PAAC","type":"related"},{"name":"Pancreatic acinar cell cancer","type":"exact"},{"name":"acinar cell adenocarcinoma of pancreas","type":"exact"},{"name":"acinar cell adenocarcinoma of the pancreas","type":"exact"},{"name":"acinar cell carcinoma of pancreas","type":"exact"},{"name":"acinar cell carcinoma of the pancreas","type":"exact"},{"name":"carcinoma of pancreatic acinar cell","type":"exact"},{"name":"pancreas acinar cell adenocarcinoma","type":"exact"},{"name":"pancreatic acinar cell adenocarcinoma","type":"exact"},{"name":"pancreatic acinar cell carcinoma","type":"exact"}],"termid":"MONDO:0006346","xrefs":{"Monarch":{"xref_id":"0006346"}}}


id: PBO:0057333
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 520h","termid":"PBO:0057333"}


id: PBO:0031552
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_peptidase_activity","termid":"PBO:0031552"}


id: MONDO:0013419
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare defect resulting in C1 deficiency and impaired activation of the complement classical pathway. C1 deficiency generally leads to severe immune complex disease with features of systemic lupus erythematosus and glomerulonephritis.","definition_xrefs":["PMID:11390518"],"direct_ancestors":[{"relation_name":"is_a","term_name":"classic complement early component deficiency","termid":"MONDO:0000015"},{"relation_name":"is_a","term_name":"immunodeficiency due to a classical component pathway complement deficiency","termid":"MONDO:0015699"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"complement component C1s deficiency","secondary_identifiers":["OMIM:613783","UMLS:C3151078","NANDO:2200779","MESH:C565170","GARD:15707","MEDGEN:462428"],"synonyms":[{"name":"C1SD","type":"related"},{"name":"C1s deficiency","type":"related"},{"name":"complement component C1s deficiency","type":"exact"}],"termid":"MONDO:0013419","xrefs":{"Monarch":{"xref_id":"0013419"}}}


id: GO:0050602
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: O2 + NADPH + H+ + 7-O-methylluteone = H2O + NADP+ + dihydrofurano derivatives.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete monoprenyl isoflavone epoxidase activity (obsolete GO:0050602)","termid":"GO:0050602"}


id: GO:1905015
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of isoleucine-tRNA ligase activity.","definition_xrefs":["GO_REF:0000059","GOC:TermGenie","PMID:1665486"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of isoleucine-tRNA ligase activity (obsolete GO:1905015)","synonyms":[{"name":"regulation of L-isoleucine:tRNAIle ligase (AMP-forming)","type":"exact"},{"name":"regulation of isoleucine translase activity","type":"exact"},{"name":"regulation of isoleucine-tRNA synthetase activity","type":"exact"},{"name":"regulation of isoleucine-transfer RNA ligase activity","type":"exact"},{"name":"regulation of isoleucyl-tRNA synthetase activity","type":"exact"},{"name":"regulation of isoleucyl-transfer RNA synthetase activity","type":"exact"},{"name":"regulation of isoleucyl-transfer ribonucleate synthetase activity","type":"exact"}],"termid":"GO:1905015"}


id: MONDO:0020096
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"OBSOLETE. Autosomal recessive form of isolated diffuse palmoplantar keratoderma.","definition_xrefs":["MONDO:patterns/autosomal_recessive"],"gene_count":0,"genotype_count":0,"name":"obsolete autosomal recessive isolated diffuse palmoplantar keratoderma (obsolete MONDO:0020096)","secondary_identifiers":["Orphanet:98356"],"synonyms":[{"name":"autosomal recessive isolated diffuse palmoplantar hyperkeratosis","type":"exact"},{"name":"isolated diffuse palmoplantar keratoderma, autosomal recessive","type":"exact"}],"termid":"MONDO:0020096","xrefs":{"Monarch":{"xref_id":"0020096"}}}


id: PBO:0088884
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA polymerase II accessory factor, Cdc73 family","termid":"PBO:0088884"}


id: MONDO:0004339
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A meningioma that affects the tuberculum sellae.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sella turcica neoplasm","termid":"MONDO:0002720"},{"relation_name":"is_a","term_name":"disorder of facial skeleton","termid":"MONDO:0023369"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tuberculum sellae meningioma","secondary_identifiers":["NCIT:C5284","UMLS:C1336829","DOID:7713","MEDGEN:277835"],"synonyms":[{"name":"meningioma of the tuberculum sellae","type":"exact"},{"name":"meningioma of tuberculum sellae","type":"exact"},{"name":"sella turcica neoplasm of tuberculum sellae","type":"exact"},{"name":"tuberculum sellae sella turcica neoplasm","type":"exact"}],"termid":"MONDO:0004339","xrefs":{"Monarch":{"xref_id":"0004339"}}}


id: PBO:0087673
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Subunit of the Lst4p-Lst7p GTPase activating protein complex for Gtr2p; stimulates the GTPase activity of Rag family GTPase Gtr2p, within the context of the Gtr1p-Gtr2p heterodimer, after amino acid stimulation; required for activation of TORC1 in response to amino acid stimulation; recruited to the vacuolar membrane during amino acid starvation and released from the membrane by TORC1; required for the transport of amino acid permease Gap1p from the Golgi to the cell surface","termid":"PBO:0087673"}


id: PBO:0044765
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DEAD-box helicase 49","termid":"PBO:0044765"}


id: PBO:0067384
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 488, pseudogene","termid":"PBO:0067384"}


id: PBO:0079608
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin conjugating enzyme E2 G2","termid":"PBO:0079608"}


id: FYPO:0003231
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which methylation of lysine at position 9 of histone H3 at heterochromatin domains occurs to a lower extent than normal.","definition_xrefs":["PMID:24210919","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased histone H3-K9 methylation during vegetative growth","termid":"FYPO:0000872"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0002494"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0001320","FYPO:0002274","FYPO:0000002","FYPO:0002494"],"is_obsolete":false,"name":"decreased histone H3-K9 methylation at heterochromatin domain during vegetative growth","synonyms":[{"name":"decreased histone H3 K9 methylation at heterochromatin domain during vegetative growth","type":"exact"},{"name":"decreased histone H3-K9 methylation at HOODs during vegetative growth","type":"exact"},{"name":"decreased histone H3-K9 methylation at heterochromatin domain during mitotic cell cycle","type":"related"},{"name":"decreased histone H3K9me at heterochromatin domain during vegetative growth","type":"exact"},{"name":"decreased histone lysine H3 K9 methylation at heterochromatin domain during vegetative growth","type":"exact"},{"name":"reduced histone H3-K9 methylation at heterochromatin domain during vegetative growth","type":"exact"}],"termid":"FYPO:0003231"}


id: PBO:0052208
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium voltage-gated channel subfamily Q member 4","termid":"PBO:0052208"}


id: PR:000027561
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A histone H2A-alpha unphosphorylated form in Schizosaccharomyces pombe.","definition_xrefs":["PomBase:MAH","PMID:19965387","PMID:21516229","PMID:15226425"],"direct_ancestors":[{"relation_name":"is_a","term_name":"histone H2A-alpha (Schizosaccharomyces pombe 972h-)","termid":"PR:P04909"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"histone H2A-alpha unphosphorylated form (Schizosaccharomyces pombe)","pombase_gene_id":"SPCC622.08c","synonyms":[{"name":"Spom-hta1/UnMod","type":"exact"}],"termid":"PR:000027561"}


id: GO:0061666
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of UFM1 to a substrate protein via the reaction X-UFM1 + S = X + S-UFM1, where X is either an E2 or E3 enzyme, the X-UFM1 linkage is a thioester bond, and the S-UFM1 linkage is an isopeptide bond between the C-terminal amino acid of UFM1 and the epsilon-amino group of lysine residues in the substrate.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ubiquitin-like protein ligase activity","termid":"GO:0061659"},{"relation_name":"is_a","term_name":"UFM1 transferase activity","termid":"GO:0071568"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0019787"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0016746","GO:0019787","GO:0003824","GO:0140096","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"UFM1 ligase activity","synonyms":[{"name":"E3","type":"broad"}],"termid":"GO:0061666"}


id: PBO:0080471
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vesicle transport through interaction with t-SNAREs 1B pseudogene 2","termid":"PBO:0080471"}


id: PBO:0027146
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_farnesyltranstransferase_activity","termid":"PBO:0027146"}


id: MONDO:0009358
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Hutterite cerebroosteonephrodysplasia syndrome","secondary_identifiers":["MESH:C536074","MEDGEN:343466","UMLS:C1856054","OMIM:236450"],"synonyms":[{"name":"Hutterite cerebroosteonephrodysplasia syndrome","type":"exact"},{"name":"cerebroosteonephosis syndrome","type":"related"},{"name":"cond","type":"related"}],"termid":"MONDO:0009358","xrefs":{"Monarch":{"xref_id":"0009358"}}}


id: PBO:0062840
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oligosaccharyltransferase complex subunit pseudogene 6","termid":"PBO:0062840"}


id: MONDO:0014679
data:
  {"annotated_genes":["SJAG_04537"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86935],"is_not":false,"summary":null,"term":"MONDO:0014679"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"PI4KA-related disorder","termid":"MONDO:1040012"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04537":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0002320"],"is_obsolete":false,"name":"polymicrogyria, perisylvian, with cerebellar hypoplasia and arthrogryposis","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:16130","MEDGEN:899982","OMIM:616531","UMLS:C4225295"],"synonyms":[{"name":"PMGYCHA","type":"related"},{"name":"polymicrogyria, perisylvian, with cerebellar hypoplasia and arthrogryposis","type":"exact"}],"termid":"MONDO:0014679","terms_by_termid":{"MONDO:0014679":null},"xrefs":{"Monarch":{"xref_id":"0014679"}}}


id: GO:1990658
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A transferase complex which is capable of transferring nitrogenous groups from one component to another.","definition_xrefs":["GOC:bhm","PMID:25417112"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase complex","termid":"GO:1990234"},{"relation_name":"part_of","term_name":"cytoplasm","termid":"GO:0005737"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737","GO:0032991"],"is_obsolete":false,"name":"transnitrosylase complex","synonyms":[{"name":"transferase complex, transferring nitrogenous groups","type":"exact"}],"termid":"GO:1990658"}


id: GO:0086082
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a protein or protein complex that results in the connection of an AV node cell with a bundle of His cell and contributes to the communication between the two cells.","definition_xrefs":["GOC:mtg_cardiac_conduct_nov11","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding involved in heterotypic cell-cell adhesion","termid":"GO:0086080"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0098631"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0005515","GO:0003674","GO:0098631"],"is_obsolete":false,"name":"cell adhesive protein binding involved in AV node cell-bundle of His cell communication","synonyms":[{"name":"cell adhesive protein binding involved in atrioventricular node cell-bundle of His cell communication","type":"exact"}],"termid":"GO:0086082"}


id: FYPO:0002199
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype observed in the vegetative growth phase of the life cycle in which a cell has a normal morphology (i.e. size, shape, and structure) but is inviable.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"normal vegetative cell morphology","termid":"FYPO:0001315"},{"relation_name":"is_a","term_name":"normal vegetative cell morphology","termid":"FYPO:0001315"},{"relation_name":"is_a","term_name":"inviable vegetative cell","termid":"FYPO:0001489"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"has_part","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001320","FYPO:0001312","FYPO:0000004","FYPO:0000257"],"is_obsolete":false,"name":"inviable vegetative cell with normal cell morphology","synonyms":[{"name":"inviable cell with normal cell morphology during vegetative growth","type":"exact"},{"name":"inviable vegetative cell with normal cell morphology during mitotic cell cycle","type":"related"},{"name":"inviable vegetative cell with normal cell shape and size","type":"exact"},{"name":"lethal; vegetative cell with normal cell morphology","type":"exact"}],"termid":"FYPO:0002199"}


id: MOD:00077
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-arginine residue to asymmetric dimethylarginine, N(omega),N(omega)-dimethyl-L-arginine.","definition_xrefs":["ChEBI:17929","PubMed:3032834","PubMed:11152131","PubMed:15835918","RESID:AA0068","PubMed:12964758","PubMed:14570711","Unimod:36#R"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-methylated residue","termid":"MOD:00602"},{"relation_name":"is_a","term_name":"dimethylated L-arginine","termid":"MOD:00783"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00427"}],"interesting_parent_ids":["MOD:00427"],"is_obsolete":false,"name":"asymmetric dimethyl-L-arginine","synonyms":[{"name":"(2S)-2-amino-5-([(dimethylamino)(imino)methyl]amino)pentanoic acid","type":"exact"},{"name":"Dimethyl","type":"related"},{"name":"MOD_RES Asymmetric dimethylarginine","type":"exact"},{"name":"MOD_RES Omega-N-methylated arginine","type":"exact"},{"name":"N5-[(dimethylamino)(imino)methyl]ornithine","type":"exact"},{"name":"NG,NG-dimethylarginine","type":"exact"},{"name":"NoNoMe2Arg","type":"exact"},{"name":"asymmetric dimethylarginine","type":"exact"},{"name":"di-Methylation","type":"related"},{"name":"omega-N,omega-N-dimethlyated L-arginine","type":"exact"},{"name":"omega-N,omega-N-dimethyl-L-arginine","type":"exact"}],"termid":"MOD:00077"}


id: GO:0021522
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which neuroepithelial cells in the ventral neural tube acquire specialized structural and/or functional features of motor neurons. Motor neurons innervate an effector (muscle or glandular) tissue and are responsible for transmission of motor impulses from the brain to the periphery. Differentiation includes the processes involved in commitment of a cell to a specific fate.","definition_xrefs":["GOC:jid","PMID:11262869","GOC:cls","GOC:dph","GO_REF:0000021","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell differentiation in spinal cord","termid":"GO:0021515"},{"relation_name":"is_a","term_name":"central nervous system neuron differentiation","termid":"GO:0021953"},{"relation_name":"part_of","term_name":"ventral spinal cord development","termid":"GO:0021517"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"spinal cord motor neuron differentiation","termid":"GO:0021522"}


id: GO:0034730
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"An SMN-Sm protein complex formed by the association of the methylated Sm proteins B/B', D1, D2, D3, E, F, and G with the SMN complex.","definition_xrefs":["PMID:17401408","PMID:12975319"],"direct_ancestors":[{"relation_name":"is_a","term_name":"SMN-Sm protein complex","termid":"GO:0034719"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575","GO:0005737"],"is_obsolete":false,"name":"SmD-containing SMN-Sm protein complex","synonyms":[{"name":"SMN-containing protein complex","type":"broad"}],"termid":"GO:0034730"}


id: MONDO:0002666
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare pancreatic ductal adenocarcinoma with poor prognosis. It is characterized by the presence of malignant signet ring cells infiltrating the pancreatic parenchyma in an individual cell pattern.","definition_xrefs":["NCIT:C5720"],"direct_ancestors":[{"relation_name":"is_a","term_name":"signet ring cell carcinoma","termid":"MONDO:0005092"},{"relation_name":"is_a","term_name":"pancreatic ductal adenocarcinoma","termid":"MONDO:0005184"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0004992"],"is_obsolete":false,"name":"pancreatic signet ring cell adenocarcinoma","secondary_identifiers":["UMLS:C1335317","DOID:3497","MEDGEN:233834"],"synonyms":[{"name":"pancreas signet ring cell carcinoma","type":"exact"},{"name":"pancreatic signet Ring cell carcinoma","type":"exact"},{"name":"pancreatic signet ring cell carcinoma","type":"exact"},{"name":"signet Ring cell carcinoma of pancreas","type":"exact"},{"name":"signet Ring cell carcinoma of the pancreas","type":"exact"}],"termid":"MONDO:0002666","xrefs":{"Monarch":{"xref_id":"0002666"}}}


id: PBO:0034813
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial protein associated with respiratory chain (predicted)","termid":"PBO:0034813"}


id: PBO:0076537
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"taste 2 receptor member 64 pseudogene","termid":"PBO:0076537"}


id: GO:0044760
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont alters or subverts cholinergic synaptic transmission, the communication from a neuron to a target (neuron, muscle, or secretory cell) across a synapse via the neurotransmitter choline, in its host organism.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host synaptic transmission","termid":"GO:0044758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated perturbation of host cholinergic synaptic transmission","synonyms":[{"name":"modulation by symbiont of host cholinergic synaptic transmission","type":"exact"},{"name":"regulation by symbiont of host cholinergic synaptic transmission","type":"exact"}],"termid":"GO:0044760"}


id: PBO:0063475
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein disulfide isomerase family A member 3 pseudogene 2","termid":"PBO:0063475"}


id: PR:Q9HGN4
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mug20 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9HGN4"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"meiotically up-regulated gene 20 protein (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC36B7.06c","synonyms":[{"name":"Spom972h-mug20","type":"exact"}],"termid":"PR:Q9HGN4"}


id: MONDO:0003958
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An immature teratoma that arises from the central nervous system and occurs during childhood.","definition_xrefs":["NCIT:C27405"],"direct_ancestors":[{"relation_name":"is_a","term_name":"central nervous system immature teratoma","termid":"MONDO:0003735"},{"relation_name":"is_a","term_name":"childhood central nervous system germ cell tumor","termid":"MONDO:0003750"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"childhood central nervous system immature teratoma","secondary_identifiers":["DOID:6654","UMLS:C1332954","MEDGEN:232344"],"synonyms":[{"name":"central nervous system immature teratoma of childhood","type":"exact"},{"name":"childhood central nervous system immature teratoma","type":"exact"},{"name":"paediatric central nervous system immature teratoma","type":"exact"},{"name":"pediatric central nervous system immature teratoma","type":"exact"}],"termid":"MONDO:0003958","xrefs":{"Monarch":{"xref_id":"0003958"}}}


id: MONDO:1012453
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"selective ADP deficiency, non-human animal","termid":"MONDO:1011703"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"selective ADP deficiency, dog","secondary_identifiers":["OMIA:001792-9615"],"termid":"MONDO:1012453","xrefs":{"Monarch":{"xref_id":"1012453"}}}


id: GO:0003437
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of cell communication that contributes to the shaping of the growth plate cartilage.","definition_xrefs":["GOC:ascb_2009","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell communication","termid":"GO:0010646"},{"relation_name":"part_of","term_name":"growth plate cartilage morphogenesis","termid":"GO:0003422"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of cell communication involved in growth plate cartilage morphogenesis","termid":"GO:0003437"}


id: PBO:0028622
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_U2-type_prespliceosome_assembly","termid":"PBO:0028622"}


id: GO:1904599
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to advanced glycation end-product.","definition_xrefs":["GO_REF:0000067","GOC:TermGenie","GOC:krc","PMID:1650387"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate derivative binding","termid":"GO:0097367"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"advanced glycation end-product binding","termid":"GO:1904599"}


id: PBO:0061915
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 1 subfamily D member 3 pseudogene","termid":"PBO:0061915"}


id: PBO:0017799
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UPF0061 family mitochondrial protein (predicted)","termid":"PBO:0017799"}


id: GO:0000918
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of marking the site where a division septum will form.","definition_xrefs":["GOC:clt"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytokinetic process","termid":"GO:0032506"},{"relation_name":"part_of","term_name":"division septum assembly","termid":"GO:0000917"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0044085"}],"interesting_parent_ids":["GO:0044085","GO:0007049","GO:0008150"],"is_obsolete":false,"name":"division septum site selection","synonyms":[{"name":"selection of site for barrier cell septum biosynthesis","type":"exact"},{"name":"selection of site for barrier cell septum formation","type":"exact"},{"name":"selection of site for division septum formation","type":"exact"},{"name":"septin assembly and septum biosynthesis","type":"broad"},{"name":"septin assembly and septum formation","type":"broad"},{"name":"septum positioning","type":"exact"}],"termid":"GO:0000918"}


id: MONDO:0005145
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Sporadic amyotrophic lateral sclerosis is a amyotrophic lateral sclerosis in which there is no known cause, such as no family history.","definition_xrefs":["EFO:0001357"],"direct_ancestors":[{"relation_name":"is_a","term_name":"amyotrophic lateral sclerosis","termid":"MONDO:0004976"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"}],"interesting_parent_ids":["MONDO:0005559"],"is_obsolete":false,"name":"sporadic amyotrophic lateral sclerosis","secondary_identifiers":["DOID:0080917","MEDGEN:400171","UMLS:C1862941"],"termid":"MONDO:0005145","xrefs":{"Monarch":{"xref_id":"0005145"}}}


id: GO:0043029
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of regulating the proliferation and elimination of T cells such that the total number of T cells within a whole or part of an organism is stable over time in the absence of an outside stimulus.","definition_xrefs":["GOC:mgi_curators","ISBN:0781735149"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lymphocyte homeostasis","termid":"GO:0002260"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"T cell homeostasis","synonyms":[{"name":"T lymphocyte homeostasis","type":"exact"},{"name":"T-cell homeostasis","type":"exact"},{"name":"T-lymphocyte homeostasis","type":"exact"}],"termid":"GO:0043029"}


id: PBO:0055504
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2938","termid":"PBO:0055504"}


id: SO:0001248
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A region of the genome of known length that is composed by ordering and aligning two or more different regions.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"experimental_feature","termid":"SO:0001410"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"assembly","secondary_identifiers":["http://en.wikipedia.org/wiki/Genome_assembly#Genome_assembly"],"termid":"SO:0001248"}


id: GO:0002606
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate, or extent of dendritic cell antigen processing and presentation.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of antigen processing and presentation","termid":"GO:0002579"},{"relation_name":"is_a","term_name":"regulation of dendritic cell antigen processing and presentation","termid":"GO:0002604"},{"relation_name":"positively_regulates","term_name":"dendritic cell antigen processing and presentation","termid":"GO:0002468"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of dendritic cell antigen processing and presentation","synonyms":[{"name":"activation of dendritic cell antigen processing and presentation","type":"narrow"},{"name":"stimulation of dendritic cell antigen processing and presentation","type":"narrow"},{"name":"up regulation of dendritic cell antigen processing and presentation","type":"exact"},{"name":"up-regulation of dendritic cell antigen processing and presentation","type":"exact"},{"name":"upregulation of dendritic cell antigen processing and presentation","type":"exact"}],"termid":"GO:0002606"}


id: FYPO:0004617
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"OBSOLETE. A cellular process phenotype observed in the vegetative growth phase of the life cycle in which minus-end specific microtubule depolymerization, i.e. the removal of tubulin dimers from the minus end of a microtubule, occurs at a greater rate, or speed, than normal.","definition_xrefs":["GO:0036078","PomBase:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete increased rate of microtubule depolymerization at minus end (obsolete FYPO:0004617)","synonyms":[{"name":"decreased microtubule stability","type":"related"},{"name":"increased microtubule depolymerization rate at minus end","type":"exact"},{"name":"increased microtubule minus end shrinkage","type":"related"},{"name":"increased rate of microtubule catastrophe at minus end","type":"related"},{"name":"increased rate of microtubule depolymerisation at minus end","type":"exact"},{"name":"increased rate of microtubule depolymerization at minus end during mitotic cell cycle","type":"related"},{"name":"increased rate of microtubule depolymerization at minus end during vegetative growth","type":"exact"},{"name":"increased rate of minus-end specific microtubule depolymerization","type":"exact"}],"termid":"FYPO:0004617"}


id: GO:1905943
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of formation of growth cone in injured axon.","definition_xrefs":["GO_REF:0000058","GOC:TermGenie","PMID:19737525"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of sprouting of injured axon","termid":"GO:0048688"},{"relation_name":"is_a","term_name":"regulation of formation of growth cone in injured axon","termid":"GO:1905942"},{"relation_name":"negatively_regulates","term_name":"formation of growth cone in injured axon","termid":"GO:0048689"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of formation of growth cone in injured axon","synonyms":[{"name":"down regulation of formation of growth cone in injured axon","type":"exact"},{"name":"down-regulation of formation of growth cone in injured axon","type":"exact"},{"name":"downregulation of formation of growth cone in injured axon","type":"exact"},{"name":"inhibition of formation of growth cone in injured axon","type":"narrow"}],"termid":"GO:1905943"}


id: MONDO:0015720
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Moderately severe hemophilia A is a form of hemophilia A characterized by factor VIII deficiency leading to abnormal bleeding as a result of minor injuries, or following surgery or tooth extraction.","definition_xrefs":["Orphanet:169805"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hemophilia A","termid":"MONDO:0010602"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005570"}],"interesting_parent_ids":["MONDO:0005570"],"is_obsolete":false,"name":"moderately severe hemophilia A","secondary_identifiers":["MEDGEN:543974","UMLS:C0272323","GARD:17060"],"synonyms":[{"name":"moderately severe factor VIII deficiency","type":"exact"},{"name":"moderately severe haemophilia type A","type":"exact"},{"name":"moderately severe hemophilia type A","type":"exact"}],"termid":"MONDO:0015720","xrefs":{"Monarch":{"xref_id":"0015720"}}}


id: PBO:0080327
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 91 pseudogene","termid":"PBO:0080327"}


id: PBO:0069090
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 337, pseudogene","termid":"PBO:0069090"}


id: GO:0090647
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the processes that arise as an organism progresses toward the end of its lifespan that results in a decline in behavioral activities such as locomotory behavior, and learning or memory.","definition_xrefs":["PMID:20523893","GOC:cjm","GOC:kmv"],"gene_count":0,"genotype_count":0,"name":"obsolete modulation of age-related behavioral decline (obsolete GO:0090647)","termid":"GO:0090647"}


id: GO:0031393
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of prostaglandin.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of prostaglandin biosynthetic process","termid":"GO:0031392"},{"relation_name":"is_a","term_name":"negative regulation of fatty acid biosynthetic process","termid":"GO:0045717"},{"relation_name":"negatively_regulates","term_name":"prostaglandin biosynthetic process","termid":"GO:0001516"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0006629"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"negatively_regulates","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006629"],"is_obsolete":false,"name":"negative regulation of prostaglandin biosynthetic process","synonyms":[{"name":"down regulation of prostaglandin biosynthetic process","type":"exact"},{"name":"down-regulation of prostaglandin biosynthetic process","type":"exact"},{"name":"downregulation of prostaglandin biosynthetic process","type":"exact"},{"name":"inhibition of prostaglandin biosynthetic process","type":"narrow"},{"name":"negative regulation of prostaglandin anabolism","type":"exact"},{"name":"negative regulation of prostaglandin biosynthesis","type":"exact"},{"name":"negative regulation of prostaglandin formation","type":"exact"},{"name":"negative regulation of prostaglandin synthesis","type":"exact"}],"termid":"GO:0031393"}


id: GO:0090347
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of the chemical reactions and pathways involving organohalogen compounds, as carried out by individual cells.","definition_xrefs":["GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of metabolic process","termid":"GO:0019222"},{"relation_name":"regulates","term_name":"organohalogen metabolic process","termid":"GO:0090345"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of organohalogen metabolic process","termid":"GO:0090347"}


id: GO:0010093
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the identity of a floral organ primordium is specified. Identity is considered to be the aggregate of characteristics by which a structure is recognized.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"is_a","term_name":"specification of plant organ identity","termid":"GO:0090701"},{"relation_name":"part_of","term_name":"floral organ formation","termid":"GO:0048449"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"specification of floral organ identity","termid":"GO:0010093"}


id: PBO:0074481
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SMAD specific E3 ubiquitin protein ligase 2 pseudogene 1","termid":"PBO:0074481"}


id: GO:0034846
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: naphthyl-2-methylene-succinyl-CoA + H2O = naphthyl-2-hydroxymethyl-succinyl-CoA.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete naphthyl-2-methylene-succinyl-CoA lyase activity (obsolete GO:0034846)","termid":"GO:0034846"}


id: PBO:0073551
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SHANK2 antisense RNA 3","termid":"PBO:0073551"}


id: PBO:0028730
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_cellular_L-ergothioneine_level","termid":"PBO:0028730"}


id: PBO:0017677
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glutathione synthetase large and small subunit Gsa1","termid":"PBO:0017677"}


id: GO:0001968
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a fibronectin, a group of related adhesive glycoproteins of high molecular weight found on the surface of animal cells, connective tissue matrices, and in extracellular fluids.","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein binding","termid":"GO:0005515"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005515"}],"interesting_parent_ids":["GO:0003674","GO:0005515","GO:0005488"],"is_obsolete":false,"name":"fibronectin binding","termid":"GO:0001968"}


id: PBO:0034109
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-realizes","termid":"PBO:0034109"}


id: MONDO:0800450
data:
  {"annotated_genes":["SJAG_04993"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88709],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0000208"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04993":null},"genotype_count":0,"is_obsolete":false,"name":"microcephaly, short stature, and impaired glucose metabolism","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIMPS:616033"],"termid":"MONDO:0800450","terms_by_termid":{"MONDO:0000208":null},"xrefs":{"Monarch":{"xref_id":"0800450"}}}


id: PBO:0016525
data:
  {"annotation_feature_type":"gene","cv_name":"disease_associated","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PAPA syndrome","termid":"PBO:0016525"}


id: SO:0001538
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A sequence variant which alters the functioning of a transcript with respect to a reference sequence.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"functionally_abnormal","termid":"SO:0002218"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcript_function_variant","synonyms":[{"name":"transcript function variant","type":"exact"}],"termid":"SO:0001538"}


id: PBO:0119999
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"taste 2 receptor member 6, pseudogene","termid":"PBO:0119999"}


id: GO:1990964
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex probably required for the internalization of endosomes during actin-coupled endocytosis. Links the site of endocytosis to the cell membrane-associated actin cytoskeleton, coordinating ARP2/3 stimulation at the later stages of endocytosis. Present in the late endocytic coat.","definition_xrefs":["GOC:bhm","PMID:10594004","PMID:11739778"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"actin cytoskeleton-regulatory complex","termid":"GO:1990964"}


id: GO:0031713
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a B2 bradykinin receptor.","definition_xrefs":["GOC:mah","GOC:nln"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bradykinin receptor binding","termid":"GO:0031711"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0005515"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0005488","GO:0003674","GO:0005515"],"is_obsolete":false,"name":"B2 bradykinin receptor binding","synonyms":[{"name":"B2 bradykinin receptor ligand","type":"narrow"}],"termid":"GO:0031713"}


id: PBO:0050119
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"high mobility group box 1 pseudogene 29","termid":"PBO:0050119"}


id: GO:0060103
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. Any constituent part of the collagen and cuticulin-based cuticle extracellular matrix, a collagen and cuticulin-based noncellular, multilayered structure that is synthesized by an underlying ectodermal (hypodermal) cell layer.","definition_xrefs":["GOC:dph"],"gene_count":0,"genotype_count":0,"name":"obsolete collagen and cuticulin-based cuticle extracellular matrix part (obsolete GO:0060103)","termid":"GO:0060103"}


id: PBO:0073265
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"septin 7 pseudogene 9","termid":"PBO:0073265"}


id: GO:0005761
data:
  {"annotated_genes":["SJAG_01727","SJAG_02324","SJAG_02067","SJAG_04889","SJAG_00628","SJAG_01520","SJAG_00105","SJAG_01303","SJAG_04918","SJAG_00148","SJAG_04493","SJAG_02762","SJAG_02071","SJAG_04207","SJAG_00944","SJAG_00799","SJAG_04281","SJAG_01719","SJAG_04490","SJAG_03649","SJAG_04689","SJAG_05270","SJAG_01468","SJAG_02452","SJAG_00513","SJAG_02359","SJAG_01829","SJAG_01473","SJAG_04244","SJAG_05573","SJAG_01591","SJAG_03636","SJAG_04019","SJAG_07009","SJAG_06110","SJAG_04164","SJAG_05244","SJAG_04216","SJAG_00844","SJAG_01463","SJAG_03053","SJAG_03040","SJAG_03284","SJAG_03584","SJAG_04173","SJAG_00077","SJAG_00889","SJAG_01413","SJAG_00782","SJAG_00086","SJAG_04494","SJAG_05320","SJAG_03176","SJAG_00860","SJAG_00497","SJAG_04753","SJAG_02836","SJAG_03192","SJAG_03065","SJAG_04893","SJAG_03297","SJAG_05218","SJAG_04788","SJAG_01045","SJAG_01630","SJAG_03402","SJAG_01478","SJAG_03459","SJAG_00315","SJAG_01767","SJAG_06253","SJAG_04378","SJAG_01734","SJAG_00060","SJAG_02643","SJAG_02201","SJAG_02777"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[91799],"is_not":false,"summary":null,"term":"GO:0005761"},{"annotations":[68357,79918,114209,116592,116710,80237,119931,74838,81218,81058,99854,110037,71381,73589,79682,99875,110186,107646,82249,74243,77171,105605,78435,112751,79946,73919,111812,78406,98488,81536,118265,108704,72524,74577,113082,72966,77401,79086,81672,115439,118156,76599,114712,110136],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0005762"},{"annotations":[75940,75004,77514,99878,105001,96055,70909,97806,107979,112356,80147,110041,74139,118015,74372,98520,105926,78344,75892,110547,114347,99879,110301,108345,117594,120099,104227,96364,93936,112639,112104,91773],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0005763"}]},"cv_name":"cellular_component","definition":"A ribosome found in the mitochondrion of a eukaryotic cell; contains a characteristic set of proteins distinct from those of cytosolic ribosomes.","definition_xrefs":["GOC:mah","ISBN:0198506732"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organellar ribosome","termid":"GO:0000313"},{"relation_name":"part_of","term_name":"mitochondrial matrix","termid":"GO:0005759"}],"gene_count":77,"genes_by_uniquename":{"SJAG_00060":null,"SJAG_00077":null,"SJAG_00086":null,"SJAG_00105":null,"SJAG_00148":null,"SJAG_00315":null,"SJAG_00497":null,"SJAG_00513":null,"SJAG_00628":null,"SJAG_00782":null,"SJAG_00799":null,"SJAG_00844":null,"SJAG_00860":null,"SJAG_00889":null,"SJAG_00944":null,"SJAG_01045":null,"SJAG_01303":null,"SJAG_01413":null,"SJAG_01463":null,"SJAG_01468":null,"SJAG_01473":null,"SJAG_01478":null,"SJAG_01520":null,"SJAG_01591":null,"SJAG_01630":null,"SJAG_01719":null,"SJAG_01727":null,"SJAG_01734":null,"SJAG_01767":null,"SJAG_01829":null,"SJAG_02067":null,"SJAG_02071":null,"SJAG_02201":null,"SJAG_02324":null,"SJAG_02359":null,"SJAG_02452":null,"SJAG_02643":null,"SJAG_02762":null,"SJAG_02777":null,"SJAG_02836":null,"SJAG_03040":null,"SJAG_03053":null,"SJAG_03065":null,"SJAG_03176":null,"SJAG_03192":null,"SJAG_03284":null,"SJAG_03297":null,"SJAG_03402":null,"SJAG_03459":null,"SJAG_03584":null,"SJAG_03636":null,"SJAG_03649":null,"SJAG_04019":null,"SJAG_04164":null,"SJAG_04173":null,"SJAG_04207":null,"SJAG_04216":null,"SJAG_04244":null,"SJAG_04281":null,"SJAG_04378":null,"SJAG_04490":null,"SJAG_04493":null,"SJAG_04494":null,"SJAG_04689":null,"SJAG_04753":null,"SJAG_04788":null,"SJAG_04889":null,"SJAG_04893":null,"SJAG_04918":null,"SJAG_05218":null,"SJAG_05244":null,"SJAG_05270":null,"SJAG_05320":null,"SJAG_05573":null,"SJAG_06110":null,"SJAG_06253":null,"SJAG_07009":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005739"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005739","GO:0005737"],"is_obsolete":false,"name":"mitochondrial ribosome","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"55S ribosome, mitochondrial","type":"narrow"}],"termid":"GO:0005761","terms_by_termid":{"GO:0005761":null,"GO:0005762":null,"GO:0005763":null}}


id: GO:0052633
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: cis-aconitate + H2O = isocitrate.","definition_xrefs":["GOC:vw","EC:4.2.1.3","GOC:pde","MetaCyc:ACONITATEHYDR-RXN"],"gene_count":0,"genotype_count":0,"name":"obsolete isocitrate hydro-lyase (cis-aconitate-forming) activity (obsolete GO:0052633)","synonyms":[{"name":"aconitate hydratase activity","type":"broad"},{"name":"cis-aconitase activity","type":"broad"},{"name":"citrate hydro-lyase activity","type":"broad"},{"name":"citrate(isocitrate) hydro-lyase (cis-aconitate-forming)","type":"broad"},{"name":"citrate(isocitrate) hydro-lyase activity","type":"broad"}],"termid":"GO:0052633"}


id: PBO:0116767
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SPON2 antisense RNA 1","termid":"PBO:0116767"}


id: PBO:0055477
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2910","termid":"PBO:0055477"}


id: PBO:0046631
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endogenous retrovirus group W member 12","termid":"PBO:0046631"}


id: PBO:0060848
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nei like DNA glycosylase 2","termid":"PBO:0060848"}


id: PBO:0070565
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L7a pseudogene 31","termid":"PBO:0070565"}


id: PBO:0002488
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inorganic phosphate transporter (predicted)","termid":"PBO:0002488"}


id: PBO:0056321
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MAP3K5 antisense RNA 1","termid":"PBO:0056321"}


id: RO:0002233
data:
  {"annotation_feature_type":"gene","cv_name":"relationship","definition":"p has input c iff: p is a process, c is a material entity, c is a participant in p, c is present at the start of p, and the state of c is modified during p.","direct_ancestors":[{"relation_name":"is_a","term_name":"has_participant","termid":"RO:0000057"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_input","termid":"RO:0002233"}


id: GO:0040014
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of growth of the body of an organism so that it reaches its usual body size.","definition_xrefs":["GOC:dph","GOC:tb","GOC:ems"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of developmental growth","termid":"GO:0048638"},{"relation_name":"is_a","term_name":"regulation of multicellular organismal process","termid":"GO:0051239"},{"relation_name":"regulates","term_name":"multicellular organism growth","termid":"GO:0035264"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of multicellular organism growth","synonyms":[{"name":"regulation of body growth","type":"exact"},{"name":"regulation of body size","type":"exact"}],"termid":"GO:0040014"}


id: MOD:01045
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-tyrosine residue to 3',5'-dichloro-L-tyrosine.","definition_xrefs":["PubMed:18688235"],"direct_ancestors":[{"relation_name":"is_a","term_name":"dichlorinated tyrosine","termid":"MOD:01037"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"3',5'-dichloro-L-tyrosine","synonyms":[{"name":"3',5'-Cl2Tyr","type":"exact"}],"termid":"MOD:01045"}


id: PATO:0001517
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An optical quality inhering in a bearer by virtue of the bearer's having focus.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"focus","termid":"PATO:0001516"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"focused","termid":"PATO:0001517"}


id: PBO:0001774
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MutS protein homolog 3","termid":"PBO:0001774"}


id: PBO:0051028
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"IGFBP7 antisense RNA 1","termid":"PBO:0051028"}


id: PBO:0041808
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"caspase recruitment domain family member 19","termid":"PBO:0041808"}


id: PBO:0074774
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"small nucleolar RNA, C/D box 3G","termid":"PBO:0074774"}


id: MONDO:1010266
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Renal hypoplasia, bilateral that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"renal hypoplasia, non-human animal","termid":"MONDO:1010264"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"renal hypoplasia, bilateral, non-human animal","secondary_identifiers":["OMIA:000858"],"termid":"MONDO:1010266","xrefs":{"Monarch":{"xref_id":"1010266"}}}


id: GO:0035966
data:
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id: MONDO:0000829
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id: PATO:0000884
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id: GO:0046455
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id: MONDO:0003890
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id: FYPO_EXT:0000003
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id: GO:0045557
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id: GO:0048583
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id: MONDO:1011495
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id: PBO:0047920
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id: PBO:0075470
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id: PBO:0078133
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id: MONDO:0800001
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id: PBO:0017997
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id: MONDO:0003498
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete gallbladder squamous cell carcinoma (obsolete MONDO:0003498)","termid":"MONDO:0003498","xrefs":{"Monarch":{"xref_id":"0003498"}}}


id: PBO:0081167
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein Y-linked","termid":"PBO:0081167"}


id: PBO:0072514
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein SA pseudogene 43","termid":"PBO:0072514"}


id: PBO:0054306
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 1698","termid":"PBO:0054306"}


id: FYPO:0002865
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype observed in the vegetative growth phase of the life cycle in which cells show increased sensitivity to polypeptone. Cells stop growing (and may die) at a concentration of polypeptone that allows wild type cells to grow. Polypeptone is a mixture of peptones made up of equal parts of pancreatic digest of casein and peptic digest of animal used in media.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased sensitivity to chemical during vegetative growth","termid":"FYPO:0000127"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002683"},{"rel_name":"is_a","termid":"FYPO:0000003"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0002683","FYPO:0000003","FYPO:0000139","FYPO:0001985"],"is_obsolete":false,"name":"sensitive to polypeptone","synonyms":[{"name":"hypersensitive to polypeptone","type":"exact"},{"name":"sensitive to polypeptone during mitotic cell cycle","type":"related"},{"name":"sensitive to polypeptone during vegetative growth","type":"exact"}],"termid":"FYPO:0002865"}


id: PBO:0057730
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 1305","termid":"PBO:0057730"}


id: GO:0003225
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures of cardiac left ventricular trabecular myocardium are generated and organized.","definition_xrefs":["GOC:mtg_heart"],"direct_ancestors":[{"relation_name":"is_a","term_name":"left ventricular cardiac muscle tissue morphogenesis","termid":"GO:0003220"},{"relation_name":"is_a","term_name":"ventricular trabecula myocardium morphogenesis","termid":"GO:0003222"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"left ventricular trabecular myocardium morphogenesis","termid":"GO:0003225"}


id: MONDO:0002041
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An infection caused by a fungus.","definition_xrefs":["NCIT:C3245"],"direct_ancestors":[{"relation_name":"is_a","term_name":"infectious disease","termid":"MONDO:0005550"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fungal infectious disease","secondary_identifiers":["ICD9:117.9","UMLS:C0026946","MEDGEN:6486","SCTID:3218000","MESH:D009181","ICD9:110-118.99","ICD10CM:B35-B49","DOID:1564"],"synonyms":[{"name":"Fungi caused disease or disorder","type":"exact"},{"name":"Fungi disease or disorder","type":"exact"},{"name":"Fungi infection","type":"exact"},{"name":"Fungi infectious disease","type":"exact"},{"name":"fungal infection","type":"related"},{"name":"infection, fungal","type":"related"},{"name":"infections, Fungi","type":"related"},{"name":"mycoses","type":"related"},{"name":"mycosis","type":"exact"}],"termid":"MONDO:0002041","xrefs":{"Monarch":{"xref_id":"0002041"}}}


id: MONDO:0006474
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant neoplasm arising from the transitional epithelium, usually affecting the urinary bladder, ureter, or renal pelvis. It may or may not have a papillary configuration. It is graded 1 to 3 or 4 according to the degree of cellular differentiation and architectural patterns. Grade 1 transitional cell carcinoma is histologically benign but it may recur. Transitional cell carcinomas may also affect the upper respiratory tract and the ovaries.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carcinoma","termid":"MONDO:0004993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"transitional cell carcinoma","secondary_identifiers":["UMLS:C0007138","DOID:2671","ICDO:8120/3","NCIT:C6783","MEDGEN:2875","EFO:1000601","GARD:7794","MESH:D002295","NCIT:C2930"],"synonyms":[{"name":"carcinoma of transitional epithelial cell","type":"exact"},{"name":"carcinoma of urothelial cell","type":"exact"},{"name":"carcinoma, urothelial, malignant","type":"exact"},{"name":"transitional carcinoma","type":"exact"},{"name":"transitional cell carcinoma","type":"exact"},{"name":"transitional cell neoplasm","type":"broad"},{"name":"transitional cell tumor","type":"broad"},{"name":"transitional cell tumour","type":"broad"},{"name":"transitional epithelial cell carcinoma","type":"exact"},{"name":"urothelial cell carcinoma","type":"exact"}],"termid":"MONDO:0006474","xrefs":{"Monarch":{"xref_id":"0006474"}}}


id: PBO:0071848
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S2 pseudogene 43","termid":"PBO:0071848"}


id: GO:0052188
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process in which an organism effects a change in the structure or function of a cellular component in a second organism, where the two organisms are in a symbiotic interaction.","definition_xrefs":["GOC:mtg_pamgo_17jul06"],"gene_count":0,"genotype_count":0,"name":"obsolete modification of cellular component in other organism involved in symbiotic interaction (obsolete GO:0052188)","synonyms":[{"name":"modification of cellular component in other organism during symbiotic interaction","type":"related"}],"termid":"GO:0052188"}


id: PBO:0045561
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dual specificity phosphatase 10","termid":"PBO:0045561"}


id: PBO:0042139
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-C motif chemokine ligand 3","termid":"PBO:0042139"}


id: MONDO:0002190
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign neoplasm that arises from eccrine ducts in the vulva and is characterized by the presence of tubules and cysts which are lined by epithelial cells in the densely fibrotic dermis.","definition_xrefs":["NCIT:C40311"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vulvar benign neoplasm","termid":"MONDO:0000643"},{"relation_name":"is_a","term_name":"syringoma","termid":"MONDO:0002191"},{"relation_name":"is_a","term_name":"benign neoplasm of sweat gland","termid":"MONDO:0021489"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"vulvar syringoma","secondary_identifiers":["MEDGEN:311490","DOID:2064","UMLS:C1520099"],"synonyms":[{"name":"mammalian vulva syringoma","type":"exact"},{"name":"syringoma of mammalian vulva","type":"exact"},{"name":"vulvar syringoma","type":"exact"}],"termid":"MONDO:0002190","xrefs":{"Monarch":{"xref_id":"0002190"}}}


id: PBO:0091436
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NADP-dependent oxidoreductase, implicated in cellular detoxification","termid":"PBO:0091436"}


id: GO:2000521
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of immunological synapse formation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of lymphocyte activation","termid":"GO:0051250"},{"relation_name":"is_a","term_name":"regulation of immunological synapse formation","termid":"GO:2000520"},{"relation_name":"negatively_regulates","term_name":"immunological synapse formation","termid":"GO:0001771"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of immunological synapse formation","synonyms":[{"name":"negative regulation of formation of immunological synapse","type":"exact"}],"termid":"GO:2000521"}


id: PBO:0047470
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fucose kinase","termid":"PBO:0047470"}


id: PBO:0042278
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CCZ1 homolog, vacuolar protein trafficking and biogenesis associated","termid":"PBO:0042278"}


id: MONDO:0968982
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autoinflammation with episodic fever and immune dysregulation","secondary_identifiers":["OMIM:620795","MEDGEN:1856440","UMLS:C5935613"],"termid":"MONDO:0968982","xrefs":{"Monarch":{"xref_id":"0968982"}}}


id: MONDO:0008802
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"antithrombin, familial hemorrhagic diathesis due to","secondary_identifiers":["MESH:C565947","MEDGEN:347227","UMLS:C1859761","OMIM:207300"],"synonyms":[{"name":"antithrombin, familial hemorrhagic diathesis due to","type":"exact"}],"termid":"MONDO:0008802","xrefs":{"Monarch":{"xref_id":"0008802"}}}


id: GO:0051031
data:
  {"annotated_genes":["SJAG_03156","SJAG_00178","SJAG_03358","SJAG_04083","SJAG_02661","SJAG_04622"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[80372,107216,73929,107690],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0006409"},{"annotations":[80959],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0016031"},{"annotations":[81358],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0071528"}]},"cv_name":"biological_process","definition":"The directed movement of tRNA, transfer ribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA transport","termid":"GO:0050658"}],"gene_count":6,"genes_by_uniquename":{"SJAG_00178":null,"SJAG_02661":null,"SJAG_03156":null,"SJAG_03358":null,"SJAG_04083":null,"SJAG_04622":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0051179","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"tRNA transport","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0051031","terms_by_termid":{"GO:0006409":null,"GO:0016031":null,"GO:0071528":null}}


id: GO:0017139
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete arsenate sensitivity/resistance (obsolete GO:0017139)","synonyms":[{"name":"arsenate sensitivity/resistance","type":"exact"}],"termid":"GO:0017139"}


id: FYPO:0005880
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A physical cellular phenotype observed in the vegetative growth phase of the life cycle in which cells form microtubules that are longer than normal and are curved, i.e. follow a smooth bend rather than a straight line, and extend around one or both ends of the cell, during interphase of the mitotic cell cycle.","definition_xrefs":["PomBase:mah","PMID:14663827"],"direct_ancestors":[{"relation_name":"is_a","term_name":"long curved interphase microtubules","termid":"FYPO:0004511"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002399"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0000054"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000054","FYPO:0002399","FYPO:0000002","FYPO:0001320"],"is_obsolete":false,"name":"long interphase microtubules curved around cell end","synonyms":[{"name":"elongated interphase microtubules curved around cell end","type":"exact"},{"name":"long cytoplasmic microtubules curved around cell end during interphase of mitotic cell cycle","type":"exact"},{"name":"long cytoplasmic microtubules curved around cell end during mitotic interphase","type":"exact"},{"name":"long interphase cytoplasmic microtubules curved around cell end","type":"exact"},{"name":"long interphase microtubules curved around cell end during vegetative growth","type":"exact"},{"name":"long interphase microtubules curved around cell tip","type":"exact"}],"termid":"FYPO:0005880"}


