# terms

id: GO:0009464
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. (Was not defined before being made obsolete).","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete cytochrome b5 (obsolete GO:0009464)","synonyms":[{"name":"cytochrome b5","type":"exact"}],"termid":"GO:0009464"}


id: MONDO:0018032
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete constitutional neutropenia with extra-hematopoietic manifestations (obsolete MONDO:0018032)","secondary_identifiers":["Orphanet:331184"],"termid":"MONDO:0018032","xrefs":{"Monarch":{"xref_id":"0018032"}}}


id: GO:0032806
data:
  {"annotated_genes":["SJAG_03061","SJAG_03206","SJAG_00150","SJAG_00901","SJAG_00995","SJAG_04420","SJAG_02057","SJAG_00512","SJAG_03618","SJAG_00758","SJAG_01149","SJAG_04368","SJAG_04614","SJAG_03967","SJAG_01207","SJAG_01213"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[112890,97680,81289],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070692"},{"annotations":[110998,110841],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070691"},{"annotations":[72122,77951,116827,80526,110946,76163,94031,71896],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005675"},{"annotations":[67350,61406,78007],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0070985"}]},"cv_name":"cellular_component","definition":"A protein complex that phosphorylates amino acid residues of RNA polymerase II C-terminal domain repeats; phosphorylation occurs mainly on Ser2 and Ser5.","definition_xrefs":["PMID:16721054","PMID:15047695","PMID:17079683"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"},{"relation_name":"is_a","term_name":"serine/threonine protein kinase complex","termid":"GO:1902554"}],"gene_count":16,"genes_by_uniquename":{"SJAG_00150":null,"SJAG_00512":null,"SJAG_00758":null,"SJAG_00901":null,"SJAG_00995":null,"SJAG_01149":null,"SJAG_01207":null,"SJAG_01213":null,"SJAG_02057":null,"SJAG_03061":null,"SJAG_03206":null,"SJAG_03618":null,"SJAG_03967":null,"SJAG_04368":null,"SJAG_04420":null,"SJAG_04614":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005634","GO:0005575","GO:0032991"],"is_obsolete":false,"name":"carboxy-terminal domain protein kinase complex","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"synonyms":[{"name":"CTDK complex","type":"exact"}],"termid":"GO:0032806","terms_by_termid":{"GO:0005675":null,"GO:0070691":null,"GO:0070692":null,"GO:0070985":null}}


id: PBO:0045801
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"endothelin receptor type B","termid":"PBO:0045801"}


id: GO:0002864
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of an acute inflammatory response to an antigenic stimulus.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of acute inflammatory response","termid":"GO:0002673"},{"relation_name":"is_a","term_name":"regulation of inflammatory response to antigenic stimulus","termid":"GO:0002861"},{"relation_name":"regulates","term_name":"acute inflammatory response to antigenic stimulus","termid":"GO:0002438"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of acute inflammatory response to antigenic stimulus","termid":"GO:0002864"}


id: PBO:0065185
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PROSER2 antisense RNA 1","termid":"PBO:0065185"}


id: MONDO:0016366
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Maternal phenylketonuria (PKU) is a rare disorder of phenylalanine metabolism, an inborn error of amino acid metabolism, characterized by the development of microcephaly, growth retardation, congenital heart disease, facial dysmorphism and intellectual disability in nonphenylketonuric offspring of mothers with excess phenylalanine (Phe) concentrations.","definition_xrefs":["Orphanet:2209"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenylketonuria","termid":"MONDO:0009861"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004736"},{"rel_name":"is_a","termid":"MONDO:0006025"},{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066","MONDO:0004736","MONDO:0006025"],"is_obsolete":false,"name":"maternal phenylketonuria","secondary_identifiers":["UMLS:C0085547","MESH:D017042","GARD:3413","icd11.foundation:1509230254","MEDGEN:88435"],"synonyms":[{"name":"hyperphenylalaninemic embryopathy","type":"exact"},{"name":"maternal PKU","type":"exact"},{"name":"maternal hyperphenylalaninemia","type":"exact"},{"name":"phenylketonuric embryopathy","type":"exact"}],"termid":"MONDO:0016366","xrefs":{"Monarch":{"xref_id":"0016366"}}}


id: GO:0046186
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of acetaldehyde, a colorless, flammable liquid intermediate in the metabolism of alcohol.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetaldehyde metabolic process","termid":"GO:0006117"},{"relation_name":"is_a","term_name":"aldehyde biosynthetic process","termid":"GO:0046184"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"acetaldehyde biosynthetic process","synonyms":[{"name":"acetaldehyde anabolism","type":"exact"},{"name":"acetaldehyde biosynthesis","type":"exact"},{"name":"acetaldehyde formation","type":"exact"},{"name":"acetaldehyde synthesis","type":"exact"}],"termid":"GO:0046186"}


id: PBO:0051994
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"junctional adhesion molecule 2","termid":"PBO:0051994"}


id: PBO:0047314
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FAST kinase domains 3","termid":"PBO:0047314"}


id: MONDO:0010952
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hereditary hyperferritinemia with congenital cataracts is characterized by the association of early onset (although generally absent at birth) cataract with persistently raised plasma ferritin concentrations in the absence of iron overload.","definition_xrefs":["Orphanet:163"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"eye disorder","termid":"MONDO:0005328"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"hereditary hyperferritinemia with congenital cataracts","secondary_identifiers":["ICD9:289.89","MEDGEN:318812","NORD:1264","UMLS:C1833213","MESH:C538137","ICD9:366.44","DOID:0111256","OMIM:600886","SCTID:702398007","GARD:2806"],"synonyms":[{"name":"Bonneau-Beaumont syndrome","type":"exact"},{"name":"HHCS","type":"exact"},{"name":"HRFTC","type":"related"},{"name":"Hyperferritinemia Cataract Syndrome","type":"exact"},{"name":"cataract-hyperferritinemia syndrome","type":"related"},{"name":"hereditary hyperferritinemia cataract syndrome","type":"related"},{"name":"hereditary hyperferritinemia-cataract syndrome","type":"exact"},{"name":"hyperferritinemia cataract syndrome","type":"related"},{"name":"hyperferritinemia with or without cataract","type":"related"},{"name":"hyperferritinemia, hereditary, with congenital cataracts","type":"related"},{"name":"hyperferritinemia-cataract syndrome","type":"related"}],"termid":"MONDO:0010952","xrefs":{"Monarch":{"xref_id":"0010952"}}}


id: PBO:0029123
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-inviable_swollen_elongated_cell_with_enlarged_nucleus_upon_entry_into_stationary_phase","termid":"PBO:0029123"}


id: GO:0019352
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of protoporphyrinogen IX from other compounds, including glycine.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycine metabolic process","termid":"GO:0006544"},{"relation_name":"is_a","term_name":"protoporphyrinogen IX biosynthetic process","termid":"GO:0006782"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"part_of","termid":"GO:0033013"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0033013"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006520","GO:0033013"],"is_obsolete":false,"name":"protoporphyrinogen IX biosynthetic process from glycine","synonyms":[{"name":"protoporphyrinogen IX anabolism from glycine","type":"exact"},{"name":"protoporphyrinogen IX formation from glycine","type":"exact"},{"name":"protoporphyrinogen IX synthesis from glycine","type":"exact"}],"termid":"GO:0019352"}


id: PBO:0034424
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-protease_activator_(obsolete_protease_activator)","termid":"PBO:0034424"}


id: MONDO:0044640
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Charcot-Marie-Tooth disease type 2","termid":"MONDO:0018993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244"],"is_obsolete":false,"name":"Charcot-Marie-Tooth disease type 2T","secondary_identifiers":["GARD:17909","Orphanet:495274"],"synonyms":[{"name":"AR-CMT2T","type":"exact"},{"name":"CMT2T","type":"exact"},{"name":"autosomal recessive axonal Charcot-Marie-Tooth disease type 2T","type":"exact"}],"termid":"MONDO:0044640","xrefs":{"Monarch":{"xref_id":"0044640"}}}


id: MONDO:0006084
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete angioleiomyoma (obsolete MONDO:0006084)","termid":"MONDO:0006084","xrefs":{"Monarch":{"xref_id":"0006084"}}}


id: MONDO:0007852
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Palmoplantar keratoderma-deafness syndrome is a keratinization disorder characterized by focal or diffuse palmoplantar keratoderma. A patchy distribution is observed with accentuation on the thenars, hypothenars and the arches of the feet. The disease becomes apparent in infancy and is associated with sensorineural hearing loss that shows a variable age of onset. Due to genetic and clinical similarities, it has been proposed that palmoplantar keratoderma-deafness syndrome, knuckle pads-leukonychia-sensorineural deafness-palmoplantar hyperkeratosis syndrome and keratoderma hereditarium mutilans may represent variants of one broad disorder of syndromic deafness with heterogeneous phenotype. The disease is transmitted in an autosomal dominant manner with incomplete penetrance.","definition_xrefs":["Orphanet:2202"],"direct_ancestors":[{"relation_name":"is_a","term_name":"diffuse palmoplantar keratoderma","termid":"MONDO:0017666"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093"],"is_obsolete":false,"name":"palmoplantar keratoderma-deafness syndrome","secondary_identifiers":["MEDGEN:332030","DOID:0111505","MESH:C536152","UMLS:C1835672","OMIM:148350","GARD:3094"],"synonyms":[{"name":"PPK-deafness syndrome","type":"exact"},{"name":"diffuse palmoplantar keratoderma with deafness (subtype)","type":"related"},{"name":"focal palmoplantar keratoderma with sensorineural deafness (subtype)","type":"related"},{"name":"hereditary palmoplantar keratoderma with deafness (subtype)","type":"related"},{"name":"keratoderma palmoplantar deafness","type":"related"},{"name":"keratoderma palmoplantar, with deafness","type":"related"},{"name":"keratoderma, palmoplantar, with deafness","type":"related"},{"name":"palmoplantar hyperkeratosis-deafness syndrome","type":"exact"},{"name":"palmoplantar hyperkeratosis-hearing loss syndrome","type":"exact"},{"name":"palmoplantar keratoderma and sensorineural deafness","type":"related"},{"name":"palmoplantar keratoderma-hearing loss syndrome","type":"exact"}],"termid":"MONDO:0007852","xrefs":{"Monarch":{"xref_id":"0007852"}}}


id: FYPO:0001176
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which cell growth is decreased relative to normal in a medium containing sucrose as the carbon source.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased vegetative cell population growth","termid":"FYPO:0001355"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0000139"}],"interesting_parent_ids":["FYPO:0002058","FYPO:0005447","FYPO:0002060","FYPO:0000139","FYPO:0002057","FYPO:0000003","FYPO:0001985"],"is_obsolete":false,"name":"decreased cell population growth on sucrose carbon source","synonyms":[{"name":"decreased growth on sucrose carbon source","type":"broad"},{"name":"decreased vegetative cell growth on sucrose carbon source","type":"exact"},{"name":"reduced cell growth on sucrose carbon source","type":"related"},{"name":"slow cell growth on sucrose carbon source","type":"narrow"}],"termid":"FYPO:0001176"}


id: GO:0043801
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: D-ribulose 5-phosphate + formaldehyde = D-arabino-3-hexulose 6-phosphate.","definition_xrefs":["PMID:16075199"],"direct_ancestors":[{"relation_name":"is_a","term_name":"aldehyde-lyase activity","termid":"GO:0016832"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0016829","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"hexulose-6-phosphate synthase activity","secondary_identifiers":["RHEA:25201","EC:4.1.2.43","MetaCyc:R10-RXN"],"termid":"GO:0043801"}


id: MONDO:0021421
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete carcinoid tumors, intestina (obsolete MONDO:0021421)","termid":"MONDO:0021421","xrefs":{"Monarch":{"xref_id":"0021421"}}}


id: MONDO:0000548
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An invasive malignant neoplasm that arises from the ovary and is characterized by a predominance of clear and hobnail malignant epithelial cells.","definition_xrefs":["NCIT:C40077"],"direct_ancestors":[{"relation_name":"is_a","term_name":"malignant epithelial tumor of ovary","termid":"MONDO:0018364"},{"relation_name":"is_a","term_name":"ovarian clear cell tumor","termid":"MONDO:0021144"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"ovarian clear cell cancer","secondary_identifiers":["DOID:0050934","MEDGEN:276544","UMLS:C1518230"],"synonyms":[{"name":"clear-cell ovarian carcinoma","type":"exact"},{"name":"malignant ovarian clear cell neoplasm","type":"exact"},{"name":"malignant ovarian clear cell tumor","type":"exact"},{"name":"malignant ovarian clear cell tumour","type":"exact"},{"name":"ovarian clear cell carcinoma","type":"related"}],"termid":"MONDO:0000548","xrefs":{"Monarch":{"xref_id":"0000548"}}}


id: PBO:0119981
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3147","termid":"PBO:0119981"}


id: GO:0090558
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the plant epidermis over time, from its formation to the mature structure.","definition_xrefs":["GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tissue development","termid":"GO:0009888"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"plant epidermis development","termid":"GO:0090558"}


id: GO:0015787
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of UDP-glucuronic acid into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. UDP-glucuronic acid is a substance composed of glucuronic acid in glycosidic linkage with uridine diphosphate.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pyrimidine nucleotide-sugar transmembrane transport","termid":"GO:0090481"},{"relation_name":"is_a","term_name":"carboxylic acid transmembrane transport","termid":"GO:1905039"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179","GO:0055085"],"is_obsolete":false,"name":"UDP-glucuronate transmembrane transport","synonyms":[{"name":"UDP-glucuronic acid transmembrane transport","type":"exact"},{"name":"UDP-glucuronic acid transport","type":"related"}],"termid":"GO:0015787"}


id: PBO:0047050
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"FAM111 trypsin like peptidase A","termid":"PBO:0047050"}


id: PBO:0079361
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tubulin alpha 3g pseudogene","termid":"PBO:0079361"}


id: GO:1904307
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a desipramine stimulus.","definition_xrefs":["PMID:20549303","GOC:TermGenie","GO_REF:0000071"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to nitrogen compound","termid":"GO:1901698"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to desipramine","termid":"GO:1904307"}


id: PBO:0044541
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DXZ4 associated non-coding transcript 2, distal","termid":"PBO:0044541"}


id: PBO:0083026
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Deleted ORF; does not encode a protein; this ORF was removed when a sequence update created a stop codon after residue 23","termid":"PBO:0083026"}


id: GO:0031591
data:
  {"annotated_genes":["SJAG_01261","SJAG_04265","SJAG_05334","SJAG_04735"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[74177,75464,76656,96577],"is_not":false,"summary":null,"term":"GO:0031591"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of wybutosine, 3H-imidazo[1,2-alpha]purine-7-butanoic acid, 4,9-dihydro- alpha-[(methoxycarbonyl)amino]- 4,6-dimethyl-9-oxo- 3-beta-D-ribofuranosyl methyl ester, a modified nucleoside found in some tRNA molecules.","definition_xrefs":["GOC:mah","RNAmods:037","GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"tRNA modification","termid":"GO:0006400"},{"relation_name":"is_a","term_name":"wybutosine metabolic process","termid":"GO:0031590"},{"relation_name":"is_a","term_name":"glycosyl compound biosynthetic process","termid":"GO:1901659"}],"gene_count":4,"genes_by_uniquename":{"SJAG_01261":null,"SJAG_04265":null,"SJAG_04735":null,"SJAG_05334":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006399"},{"rel_name":"part_of","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150","GO:0006399"],"is_obsolete":false,"name":"wybutosine biosynthetic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"yW biosynthesis","type":"exact"},{"name":"yW biosynthetic process","type":"exact"}],"termid":"GO:0031591","terms_by_termid":{"GO:0031591":null}}


id: MONDO:0018387
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete rare male infertility due to adrenal disorder (obsolete MONDO:0018387)","secondary_identifiers":["Orphanet:399584"],"termid":"MONDO:0018387","xrefs":{"Monarch":{"xref_id":"0018387"}}}


id: MONDO:0002053
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete hypoglycemic coma (obsolete MONDO:0002053)","secondary_identifiers":["HP:0001325","DOID:1607","SCTID:267384006","ICD9:251.0"],"termid":"MONDO:0002053","xrefs":{"Monarch":{"xref_id":"0002053"}}}


id: PBO:0039027
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ArfGAP with GTPase domain, ankyrin repeat and PH domain 3","termid":"PBO:0039027"}


id: PR:O74518
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- cid12 gene.","definition_xrefs":["UniProtKB:O74518","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"poly(A) RNA polymerase cid12 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC663.12","synonyms":[{"name":"PAP (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-cid12","type":"exact"},{"name":"caffeine-induced death protein 12 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"polynucleotide adenylyltransferase cid12 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O74518"}


id: GO:0015228
data:
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id: PBO:0068342
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id: GO:0070452
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id: GO:0071223
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id: PBO:0026832
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id: GO:0005759
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id: MONDO:0001736
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id: PBO:0088942
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id: MONDO:0035350
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id: FYPO:0007230
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id: MONDO:0001426
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id: MONDO:0015037
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Lissencephaly with cerebellar hypoplasia type D (LCHd) is a form of lissencephaly with cerebellar hypoplasia characterized by pronounced microcephaly (at least B1 3 SD), intellectual disability, spastic diplegia and moderate to severe cerebellar hypoplasia involving both vermis and hemispheres.","definition_xrefs":["Orphanet:100014"],"direct_ancestors":[{"relation_name":"is_a","term_name":"lissencephaly with cerebellar hypoplasia","termid":"MONDO:0019450"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0002320"],"is_obsolete":false,"name":"lissencephaly with cerebellar hypoplasia type D","secondary_identifiers":["GARD:19734","MEDGEN:895252","icd11.foundation:1633599738","SCTID:715821000","UMLS:C4274991"],"termid":"MONDO:0015037","xrefs":{"Monarch":{"xref_id":"0015037"}}}


id: PBO:0057950
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 3672","termid":"PBO:0057950"}


id: GO:0001551
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Association of oocytes with supporting epithelial granulosa cells to form primordial follicles.","definition_xrefs":["PMID:30010832"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ovulation cycle process","termid":"GO:0022602"},{"relation_name":"part_of","term_name":"ovarian follicle development","termid":"GO:0001541"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ovarian follicle endowment","termid":"GO:0001551"}


id: MONDO:0004696
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A in situ carcinoma that involves the larynx.","definition_xrefs":["MONDO:patterns/location"],"direct_ancestors":[{"relation_name":"is_a","term_name":"laryngeal carcinoma","termid":"MONDO:0002358"},{"relation_name":"is_a","term_name":"in situ carcinoma","termid":"MONDO:0004647"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"larynx carcinoma in situ","secondary_identifiers":["NCIT:C9100","UMLS:C0154069","DOID:9011","ICD9:231.0","MEDGEN:56336","SCTID:92634009","ICD10CM:D02.0"],"synonyms":[{"name":"carcinoma in situ of larynx","type":"exact"},{"name":"carcinoma in situ of the larynx","type":"exact"},{"name":"laryngeal cancer stage 0","type":"exact"},{"name":"laryngeal carcinoma in situ","type":"exact"},{"name":"laryngeal carcinoma stage 0","type":"exact"},{"name":"larynx carcinoma in situ","type":"exact"},{"name":"larynx in situ carcinoma","type":"exact"},{"name":"stage 0 carcinoma of larynx","type":"exact"},{"name":"stage 0 carcinoma of the larynx","type":"exact"},{"name":"stage 0 laryngeal cancer","type":"exact"},{"name":"stage 0 laryngeal cancer aJCC v6","type":"exact"},{"name":"stage 0 laryngeal cancer aJCC v6, v7, and V8","type":"exact"},{"name":"stage 0 laryngeal cancer aJCC v7","type":"exact"},{"name":"stage 0 laryngeal cancer aJCC v8","type":"exact"},{"name":"stage 0 laryngeal carcinoma","type":"exact"},{"name":"stage 0 laryngeal carcinoma in situ","type":"exact"},{"name":"stage 0 laryngeal throat cancer","type":"exact"},{"name":"stage 0 larynx carcinoma","type":"exact"}],"termid":"MONDO:0004696","xrefs":{"Monarch":{"xref_id":"0004696"}}}


id: PR:Q10205
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An exosome complex component RRP43 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03662","PRO:DNx","PANTHER:PTHR11097:SF9"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exosome complex component rrp43 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC17D1.03c","secondary_identifiers":["UniProtKB:Q10205"],"synonyms":[{"name":"Spom972h-EXOSC8","type":"exact"},{"name":"ribosomal RNA-processing protein 43 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q10205"}


id: MONDO:0011128
data:
  {"annotated_genes":["SJAG_02431","SJAG_03703"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88961,88960],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0032751"}]},"cv_name":"mondo","definition":"Sheldon-Hall syndrome (SHS) is a rare multiple congenital contracture syndrome characterized by contractures of the distal joints of the limbs, triangular face, downslanting palpebral fissures, small mouth, and high arched palate.","definition_xrefs":["Orphanet:1147"],"direct_ancestors":[{"relation_name":"is_a","term_name":"distal arthrogryposis","termid":"MONDO:0019942"}],"gene_count":2,"genes_by_uniquename":{"SJAG_02431":null,"SJAG_03703":null},"genotype_count":0,"is_obsolete":false,"name":"Sheldon-hall syndrome","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C1834523","MEDGEN:320374","DOID:0111599","GARD:16556","icd11.foundation:1206883656"],"synonyms":[{"name":"DA2B","type":"exact"},{"name":"Freeman Sheldon syndrome, variant","type":"related"},{"name":"Freeman Sheldon variant","type":"related"},{"name":"Freeman-Sheldon syndrome variant","type":"exact"},{"name":"Sheldon-Hall syndrome","type":"exact"},{"name":"arthrogryposis multiplex congenita distal type 2B","type":"related"},{"name":"arthrogryposis multiplex congenita distal type II with craniofacial abnormalities","type":"related"},{"name":"arthrogryposis multiplex congenita, distal, type 2B","type":"related"},{"name":"arthrogryposis multiplex congenita, distal, type II, with craniofacial abnormalities","type":"related"},{"name":"arthrogryposis, distal, type 2B","type":"exact"},{"name":"distal arthrogryposis type 2B","type":"exact"}],"termid":"MONDO:0011128","terms_by_termid":{"MONDO:0032751":null},"xrefs":{"Monarch":{"xref_id":"0011128"}}}


id: GO:0072024
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the macula densa over time, from its formation to the mature structure. The macula densa is an area of specialized cells in the distal tubule that makes contact with the vascular pole of the glomerulus.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nephron epithelium development","termid":"GO:0072009"},{"relation_name":"part_of","term_name":"juxtaglomerular apparatus development","termid":"GO:0072051"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"macula densa development","termid":"GO:0072024"}


id: PBO:0030467
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_pantothenate_import","termid":"PBO:0030467"}


id: PR:Q9UT60
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A trans-1,2-dihydrobenzene-1,2-diol dehydrogenase that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR22604:SF15","OMA:SCHPO01226"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized oxidoreductase C513.06c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC513.06c","secondary_identifiers":["UniProtKB:Q9UT60"],"synonyms":[{"name":"Spom972h-DHDH","type":"exact"}],"termid":"PR:Q9UT60"}


id: PBO:0073029
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"secernin 2","termid":"PBO:0073029"}


id: GO:0009556
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the microsporocyte undergoes meiosis, giving rise to four haploid microspores.","definition_xrefs":["GOC:tb","GOC:mtg_plant"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plant-type sporogenesis","termid":"GO:0048236"},{"relation_name":"part_of","term_name":"pollen development","termid":"GO:0009555"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0007049"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0007049","GO:0008150"],"is_obsolete":false,"name":"microsporogenesis","synonyms":[{"name":"microspore development","type":"exact"}],"termid":"GO:0009556"}


id: FYECO:0000357
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which aspartic acid was added to the medium or assay buffer in excess compared to standard medium or assay buffers.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ aspartate","synonyms":[{"name":"+ Asp","type":"exact"}],"termid":"FYECO:0000357"}


id: GO:0044155
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A small pit, depression, or invagination, such as any of the minute pits or incuppings of the host cell membrane formed during pinocytosis, that communicates with the outside of a host cell and extends inward, indenting the host cytoplasm and the host cell membrane. Such caveolae may be pinched off to form free vesicles within the host cytoplasm. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:rph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"host cell part","termid":"GO:0033643"},{"relation_name":"part_of","term_name":"host cell membrane","termid":"GO:0033644"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"host caveola","termid":"GO:0044155"}


id: PBO:0071512
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein L34 pseudogene 15","termid":"PBO:0071512"}


id: PBO:0038509
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP binding cassette subfamily D member 1 pseudogene 4","termid":"PBO:0038509"}


id: MONDO:0018668
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"fungal infectious disease","termid":"MONDO:0002041"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"scedosporiosis","secondary_identifiers":["MEDGEN:1713603","GARD:21880","MESH:C000656924","Orphanet:449280","UMLS:C1142170","icd11.foundation:807637046"],"termid":"MONDO:0018668","xrefs":{"Monarch":{"xref_id":"0018668"}}}


id: PBO:0060502
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nucleosome assembly protein 1 like 4 pseudogene 1","termid":"PBO:0060502"}


id: FYPO:0005015
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which rRNA modification, the covalent alteration of one or more nucleotides within an rRNA molecule, is abnormal.","definition_xrefs":["GO:0000154","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal RNA modification","termid":"FYPO:0000370"},{"relation_name":"is_a","term_name":"abnormal RNA processing","termid":"FYPO:0001553"},{"relation_name":"is_a","term_name":"abnormal ribosome biogenesis","termid":"FYPO:0005017"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000294"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000294","FYPO:0000002","FYPO:0001985","FYPO:0006551","FYPO:0001320","FYPO:0005447"],"is_obsolete":false,"name":"abnormal rRNA modification","synonyms":[{"name":"abnormal rRNA modification during mitotic cell cycle","type":"related"},{"name":"abnormal rRNA modification during vegetative growth","type":"exact"}],"termid":"FYPO:0005015"}


id: PBO:0030941
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_microtubule_polymerization_or_depolymerization","termid":"PBO:0030941"}


id: MONDO:0011820
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"inherited disease susceptibility","termid":"MONDO:0020573"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"scoliosis, isolated, susceptibility to, 2","secondary_identifiers":["UMLS:C1846366","MEDGEN:375871","OMIM:607354"],"synonyms":[{"name":"IS2","type":"exact"},{"name":"scoliosis, idiopathic 2","type":"exact"},{"name":"scoliosis, isolated, susceptibility to, 2","type":"exact"}],"termid":"MONDO:0011820","xrefs":{"Monarch":{"xref_id":"0011820"}}}


id: GO:0033102
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The lipid bilayer surrounding an acidocalcisome.","definition_xrefs":["GOC:ecd","PMID:11378195"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bounding membrane of organelle","termid":"GO:0098588"},{"relation_name":"part_of","term_name":"acidocalcisome","termid":"GO:0020022"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"}],"interesting_parent_ids":["GO:0005575","GO:0005737"],"is_obsolete":false,"name":"acidocalcisome membrane","termid":"GO:0033102"}


id: GO:0071605
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The appearance of monocyte chemotactic protein-1 due to biosynthesis or secretion following a cellular stimulus, resulting in an increase in its intracellular or extracellular levels.","definition_xrefs":["GOC:add","GOC:rv"],"direct_ancestors":[{"relation_name":"is_a","term_name":"chemokine production","termid":"GO:0032602"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0010467"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"monocyte chemotactic protein-1 production","synonyms":[{"name":"CCL2 production","type":"exact"},{"name":"MCP-1 production","type":"exact"}],"termid":"GO:0071605"}


id: PATO:0002516
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A positional quality inhering in a bearer by virtue of the bearer being hidden from view or covered by another entity.","definition_xrefs":["PATOC:EJS"],"direct_ancestors":[{"relation_name":"is_a","term_name":"position","termid":"PATO:0000140"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"concealed by","termid":"PATO:0002516"}


id: MONDO:0007526
data:
  {"annotated_genes":["SJAG_00222","SJAG_00183"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[88897],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012873"},{"annotations":[87865],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0014139"}]},"cv_name":"mondo","definition":"A form of Ehlers-Danlos syndrome characterized by a premature aging with sparse hair, macrocephaly, loose elastic skin, failure to thrive, joint laxity, psychomotor retardation, hypotonia, and defective wound healing with atrophic scars.","definition_xrefs":["Orphanet:75496"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"skin disorder","termid":"MONDO:0005093"},{"relation_name":"excluded_subClassOf","term_name":"obsolete primary bone dysplasia with decreased bone density (obsolete MONDO:0019704)","termid":"MONDO:0019704"},{"relation_name":"is_a","term_name":"developmental anomaly of metabolic origin","termid":"MONDO:0015327"},{"relation_name":"is_a","term_name":"inborn errors of metabolism","termid":"MONDO:0019052"},{"relation_name":"is_a","term_name":"Ehlers-Danlos syndrome","termid":"MONDO:0020066"}],"gene_count":2,"genes_by_uniquename":{"SJAG_00183":null,"SJAG_00222":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"Ehlers-Danlos syndrome, spondylodysplastic type","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:C536201","GARD:9991","DOID:0050802","SCTID:720861000"],"synonyms":[{"name":"B4GALT7-CDG","type":"exact"},{"name":"EDS, progeroid type","type":"exact"},{"name":"EDSSPD1","type":"narrow"},{"name":"Ehlers-Danlos syndrome progeroid type","type":"exact"},{"name":"Ehlers-Danlos syndrome with short stature and limb anomalies","type":"narrow"},{"name":"Ehlers-Danlos syndrome, progeroid type","type":"related"},{"name":"Ehlers-Danlos syndrome, progeroid type (former)","type":"related"},{"name":"Ehlers-Danlos syndrome, spondylodysplastic type, 1","type":"narrow"},{"name":"PDS","type":"exact"},{"name":"Pds, defective biosynthesis of","type":"narrow"},{"name":"XGPT deficiency","type":"narrow"},{"name":"defective biosynthesis of proteodermatan sulfate","type":"exact"},{"name":"defective biosynthesis of proteodermatan sulphate","type":"exact"},{"name":"dermatan sulfate proteoglycan","type":"narrow"},{"name":"dermatan sulphate proteoglycan","type":"narrow"},{"name":"galactosyltransferase 1 deficiency","type":"narrow"},{"name":"galactosyltransferase I deficiency","type":"exact"},{"name":"proteodermatan sulfate, defective biosynthesis of","type":"narrow"},{"name":"spondylodysplastic Ehlers-Danlos syndrome","type":"related"},{"name":"xylosylprotein 4-beta-galactosyltransferase deficiency","type":"narrow"}],"termid":"MONDO:0007526","terms_by_termid":{"MONDO:0012873":null,"MONDO:0014139":null},"xrefs":{"Monarch":{"xref_id":"0007526"}}}


id: GO:0002783
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of an antifungal peptide.","definition_xrefs":["GOC:add","ISBN:0781735149","PMID:11807545","PMID:15638771"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antimicrobial peptide biosynthetic process","termid":"GO:0002777"},{"relation_name":"part_of","term_name":"antifungal peptide production","termid":"GO:0002781"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0010467","GO:0008150"],"is_obsolete":false,"name":"antifungal peptide biosynthetic process","termid":"GO:0002783"}


id: PBO:0047249
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"family with sequence similarity 238 member C","termid":"PBO:0047249"}


id: PBO:0116663
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ARF like GTPase 4C","termid":"PBO:0116663"}


id: FYPO:0007749
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the localization of a protein to the spindle is decreased during the first meiotic nuclear division.","definition_xrefs":["PomBase:mah","PMID:32723864"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to meiotic spindle","termid":"FYPO:0006454"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0000002","FYPO:0000138","FYPO:0001985"],"is_obsolete":false,"name":"decreased protein localization to meiotic spindle during meiosis I","synonyms":[{"name":"decreased protein localisation to meiotic spindle during meiosis I","type":"exact"},{"name":"decreased protein localization to meiosis I spindle","type":"exact"},{"name":"decreased protein localization to spindle during first meiotic nuclear division","type":"exact"},{"name":"decreased protein localization to spindle during meiosis I","type":"exact"},{"name":"reduced protein localization to meiotic spindle during meiosis I","type":"exact"}],"termid":"FYPO:0007749"}


id: GO:0102970
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: UDP-alpha-D-glucose + 7-deoxyloganetate = H+ + 7-deoxyloganate + UDP.","definition_xrefs":["GOC:pz","EC:2.4.1.323"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosyltransferase activity","termid":"GO:0016758"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016757","GO:0016740","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"7-deoxyloganetic acid glucosyltransferase activity","secondary_identifiers":["MetaCyc:RXN-9372","RHEA:39895"],"termid":"GO:0102970"}


id: PBO:0111519
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cornichon family member 4","termid":"PBO:0111519"}


id: PBO:0005418
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zf-DBF type","termid":"PBO:0005418"}


id: PBO:0005273
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G protein Negative Regulator","termid":"PBO:0005273"}


id: MONDO:0024341
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neoplasm arising from the neural retina. This category includes retinoblastoma and retinocytoma.","direct_ancestors":[{"relation_name":"is_a","term_name":"retina neoplasm","termid":"MONDO:0021231"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"retinal cell neoplasm","secondary_identifiers":["NCIT:C7061","UMLS:C1335765","MEDGEN:277595"],"synonyms":[{"name":"retinal cell neoplasm","type":"exact"},{"name":"retinal cell tumor","type":"exact"},{"name":"retinal cell tumour","type":"exact"},{"name":"retinal neural cell neoplasm","type":"exact"}],"termid":"MONDO:0024341","xrefs":{"Monarch":{"xref_id":"0024341"}}}


id: GO:0070816
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The process of introducing a phosphate group on to an amino acid residue in the C-terminal domain of RNA polymerase II. Typically, this occurs during the transcription cycle and results in production of an RNA polymerase II enzyme where the carboxy-terminal domain (CTD) of the largest subunit is extensively phosphorylated, often referred to as hyperphosphorylated or the II(0) form. Specific types of phosphorylation within the CTD are usually associated with specific regions of genes, though there are exceptions. The phosphorylation state regulates the association of specific complexes such as the capping enzyme or 3'-RNA processing machinery to the elongating RNA polymerase complex.","definition_xrefs":["GOC:mah","GOC:krc","PMID:17079683"],"gene_count":0,"genotype_count":0,"name":"obsolete phosphorylation of RNA polymerase II C-terminal domain (obsolete GO:0070816)","synonyms":[{"name":"CTD domain phosphorylation of RNA polymerase II","type":"exact"},{"name":"generation of II(0) form of RNA polymerase II","type":"exact"},{"name":"generation of hyperphosphorylated CTD of RNA polymerase II","type":"exact"},{"name":"hyperphosphorylation of RNA polymerase II C-terminal domain","type":"exact"}],"termid":"GO:0070816"}


id: GO:0120207
data:
  {"annotated_genes":["SJAG_02572"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[89821],"is_not":false,"summary":null,"term":"GO:0120207"}]},"cv_name":"biological_process","definition":"The process of selecting and or marking the position where endocytosis will occur.","definition_xrefs":["GOC:vw","PMID:30044717"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to cell periphery","termid":"GO:1990778"},{"relation_name":"part_of","term_name":"endocytosis","termid":"GO:0006897"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02572":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0016192"},{"rel_name":"part_of","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0016192","GO:0006810","GO:0051179","GO:0008150"],"is_obsolete":false,"name":"endocytosis, site selection","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0120207","terms_by_termid":{"GO:0120207":null}}


id: GO:0061939
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that mediates the transfer of information from one cell to another using c-di-GMP as the signal.","definition_xrefs":["PMID:28057864","PMID:22864416"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell-cell signaling","termid":"GO:0007267"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0023052"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0023052","GO:0008150"],"is_obsolete":false,"name":"c-di-GMP signaling","synonyms":[{"name":"3',5'-cyclic di-GMP signaling","type":"exact"},{"name":"cyclic di-(3':5')-guanosine monophosphate signaling","type":"exact"},{"name":"cyclic di-GMP signaling","type":"exact"},{"name":"cyclic diguanylate signaling","type":"exact"}],"termid":"GO:0061939"}


id: GO:0002055
data:
  {"annotated_genes":["SJAG_01859"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[75718],"is_not":false,"summary":null,"term":"GO:0002055"}]},"cv_name":"molecular_function","definition":"Binding to adenine, a purine base.","definition_xrefs":["GOC:hjd"],"direct_ancestors":[{"relation_name":"is_a","term_name":"purine nucleobase binding","termid":"GO:0002060"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01859":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"adenine binding","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"6-aminopurine binding","type":"exact"}],"termid":"GO:0002055","terms_by_termid":{"GO:0002055":null}}


id: GO:0061056
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The progression of the sclerotome over time, from its initial formation to the mature structure. The sclerotome is the portion of the somite that will give rise to a vertebra.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesenchyme development","termid":"GO:0060485"},{"relation_name":"part_of","term_name":"somite development","termid":"GO:0061053"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"sclerotome development","termid":"GO:0061056"}


id: PBO:0088090
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UDP-glucose:sterol glucosyltransferase; conserved enzyme involved in synthesis of sterol glucoside membrane lipids; in contrast to ATG26 from P. pastoris, S. cerevisiae ATG26 is not involved in autophagy","termid":"PBO:0088090"}


id: PBO:0002480
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"alcohol dehydrogenase pseudogene","termid":"PBO:0002480"}


id: MONDO:0006038
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"It describes patients in whom a diagnosis of ulcerative colitis or Crohn's disease cannot be made based on standard clinical testing, including colonoscopy, imaging, laboratory tests, and biopsy.","definition_xrefs":["EFO:1000034"],"direct_ancestors":[{"relation_name":"is_a","term_name":"colitis","termid":"MONDO:0005292"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0004335"],"is_obsolete":false,"name":"indeterminate colitis","secondary_identifiers":["icd11.foundation:553916326","ICD10CM:K52.3","ICD9:558.9","MEDGEN:87418","NCIT:C27110","UMLS:C0341332","SCTID:235746007"],"synonyms":[{"name":"colitis of indeterminate type","type":"exact"}],"termid":"MONDO:0006038","xrefs":{"Monarch":{"xref_id":"0006038"}}}


id: GO:0034574
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: didemethylisoproturon + H2O = 4'-(2-hydroxyisopropyl)phenylurea + 2 H+ + 2 e-.","definition_xrefs":["UM-BBD_reactionID:r0899"],"gene_count":0,"genotype_count":0,"name":"obsolete didemethylisoproturon dehydrogenase activity (obsolete GO:0034574)","termid":"GO:0034574"}


id: PR:Q9P7N6
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- mgr3 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q9P7N6"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TPR repeat-containing protein P27G11.02 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAP27G11.02","synonyms":[{"name":"Spom972h-mgr3","type":"exact"}],"termid":"PR:Q9P7N6"}


id: PBO:0073944
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 19 member 2","termid":"PBO:0073944"}


id: PBO:0001018
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coatomer gamma subunit Sec21 (predicted)","termid":"PBO:0001018"}


id: MONDO:0971138
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"},{"relation_name":"is_a","term_name":"developmental anomaly of metabolic origin","termid":"MONDO:0015327"},{"relation_name":"is_a","term_name":"disorder of lysosomal-related organelles","termid":"MONDO:0017739"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"}],"interesting_parent_ids":["MONDO:0005066"],"is_obsolete":false,"name":"progressive hypotonia-intellectual disability-facial dysmorphism syndrome due to FYVE-defective RBSN","secondary_identifiers":["MEDGEN:1863933","UMLS:C5925097","Orphanet:675782"],"termid":"MONDO:0971138","xrefs":{"Monarch":{"xref_id":"0971138"}}}


id: PBO:0003488
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"translation initiation factor eIF4E 4F complex subunit","termid":"PBO:0003488"}


id: GO:0000475
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process involved in the maturation of a precursor 2S ribosomal RNA (rRNA) molecule into a mature 2S rRNA molecule.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"rRNA processing","termid":"GO:0006364"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0044085"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0042254"},{"rel_name":"part_of","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0042254","GO:0008150","GO:0044085","GO:0010467"],"is_obsolete":false,"name":"maturation of 2S rRNA","termid":"GO:0000475"}


id: GO:0061402
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that increases the frequency, rate or extent of transcription from an RNA polymerase II promoter as a result of a pH stimulus with pH < 7.","definition_xrefs":["GOC:dph","GOC:go_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of transcription from RNA polymerase II promoter in response to acidic pH (obsolete GO:0061402)","synonyms":[{"name":"positive regulation of transcription from RNA polymerase II promoter in response to acidity","type":"broad"}],"termid":"GO:0061402"}


id: PBO:0000690
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"two-component GAP Byr4","termid":"PBO:0000690"}


id: SO:0002275
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Short interspersed elements that originated from 7SL RNAs.","definition_xrefs":["PMID:21673742"],"direct_ancestors":[{"relation_name":"is_a","term_name":"SINE_element","termid":"SO:0000206"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"7SL_SINE_retrotransposon","synonyms":[{"name":"7SL SINE element","type":"exact"},{"name":"7SL SINE retrotransposon","type":"exact"},{"name":"RSL retrotransposon","type":"exact"}],"termid":"SO:0002275"}


id: PBO:0030013
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-resistance_to_Calcofluor_White","termid":"PBO:0030013"}


id: PBO:0066895
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RN7SK pseudogene 195","termid":"PBO:0066895"}


id: GO:0050150
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2,3-dihydroxybenzoate + H+ = catechol + CO2.","definition_xrefs":["EC:4.1.1.46","RHEA:21492"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"o-pyrocatechuate decarboxylase activity","secondary_identifiers":["GO:0018790","KEGG_REACTION:R00821","UM-BBD_reactionID:r0579","MetaCyc:O-PYROCATECHUATE-DECARBOXYLASE-RXN"],"synonyms":[{"name":"2,3-DHBA decarboxylase activity","type":"related"},{"name":"2,3-dihydroxybenzoate carboxy-lyase (catechol-forming)","type":"related"},{"name":"2,3-dihydroxybenzoate carboxy-lyase activity","type":"related"},{"name":"2,3-dihydroxybenzoate decarboxylase activity","type":"exact"},{"name":"2,3-dihydroxybenzoic acid decarboxylase activity","type":"related"}],"termid":"GO:0050150"}


id: MONDO:1011304
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Mammary fibrocystic disease that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mammary gland disorder, non-human animal","termid":"MONDO:1011303"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mammary fibrocystic disease, non-human animal","termid":"MONDO:1011304","xrefs":{"Monarch":{"xref_id":"1011304"}}}


id: MONDO:0003585
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant neoplasm arising from adipocytes, that occurs in adults. The tumor maybe one of several histologic types including well-differentiated, dedifferentiated, myxoid/round cell, and pleomorphic liposarcoma.","definition_xrefs":["NCIT:C7811"],"direct_ancestors":[{"relation_name":"is_a","term_name":"liposarcoma","termid":"MONDO:0005060"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"adult liposarcoma","secondary_identifiers":["NANDO:2200065","DOID:5693","MEDGEN:75842","UMLS:C0278608"],"synonyms":[{"name":"adult liposarcoma","type":"exact"},{"name":"liposarcoma","type":"broad"},{"name":"liposarcoma of adults","type":"exact"}],"termid":"MONDO:0003585","xrefs":{"Monarch":{"xref_id":"0003585"}}}


id: PBO:0075853
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SSX2IP pseudogene 1","termid":"PBO:0075853"}


id: PBO:0086180
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein required for transcription of rDNA by RNA polymerase I; transcription factor independent of DNA template; involved in recruitment of RNA polymerase I to rDNA; structure reveals unique HEAT repeat fold and a surface serine patch; phosphorylation of serine patch impairs cell growth and reduces RNA polymerase I binding in vitro and RNA polymerase I recruitment to the rDNA gene in vivo","termid":"PBO:0086180"}


id: PBO:0003228
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Vid27 family protein","termid":"PBO:0003228"}


id: GO:0022809
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Small molecule produced by bacteria that carries an ion across the membrane by enclosing the ion and travelling with the ion across the membrane. It does not form a fully open pore across the membrane.","definition_xrefs":["GOC:mtg_transport","GOC:pr","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transmembrane transporter activity","termid":"GO:0022857"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"mobile ion carrier activity","synonyms":[{"name":"ionophore","type":"broad"}],"termid":"GO:0022809"}


id: PBO:0057467
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 585","termid":"PBO:0057467"}


id: SO:1000116
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:1000116 sequence_variant_causing_conformational_change (obsolete SO:1000116)","synonyms":[{"name":"mutation causing conformational change","type":"related"},{"name":"sequence variant causing conformational change","type":"exact"}],"termid":"SO:1000116"}


id: GO:0032311
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A stable heterodimer of angiogenin and placental ribonuclease inhibitor; interaction between angiogenin and PRI prevents angiogenin binding to its receptor to stimulate angiogenesis.","definition_xrefs":["PMID:3470787","PMID:2706246"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"},{"relation_name":"part_of","term_name":"extracellular region","termid":"GO:0005576"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"part_of","termid":"GO:0005576"}],"interesting_parent_ids":["GO:0005575","GO:0032991","GO:0005576"],"is_obsolete":false,"name":"angiogenin-PRI complex","synonyms":[{"name":"angiogenin-placental ribonuclease inhibitor complex","type":"exact"}],"termid":"GO:0032311"}


id: PBO:0064566
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"POP1 homolog, ribonuclease P/MRP subunit","termid":"PBO:0064566"}


id: PBO:0082923
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cytochrome c oxidase subunit; has a role in assembly of respiratory supercomplexes; similar to Rcf1p, and either Rcf1p or Rcf2p is required for late-stage assembly of the Cox12p and Cox13p subunits and for cytochrome c oxidase activity; associates with the cytochrome c oxidase - cytochrome bc1 supercomplex; null mutant accumulates reactive oxygen species; member of the conserved hypoxia induced gene family; C. elegans homolog is functional in yeast","termid":"PBO:0082923"}


id: MONDO:0018257
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An instance of syringomyelia that is caused by an inherited modification of the individual's genome.","definition_xrefs":["MONDO:patterns/hereditary"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary syringomyelia","termid":"MONDO:0020508"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"familial syringomyelia","secondary_identifiers":["UMLS:C5680970","Orphanet:370034","GARD:21589","MEDGEN:1842994"],"synonyms":[{"name":"hereditary syringomyelia","type":"exact"}],"termid":"MONDO:0018257","xrefs":{"Monarch":{"xref_id":"0018257"}}}


id: PBO:0090750
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial metalloendopeptidase","termid":"PBO:0090750"}


id: MONDO:0012604
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any isolated microphthalmia in which the cause of the disease is a mutation in the RAX gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"isolated microphthalmia","termid":"MONDO:0000062"},{"relation_name":"is_a","term_name":"isolated anophthalmia-microphthalmia syndrome","termid":"MONDO:0016764"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"isolated microphthalmia 3","secondary_identifiers":["MESH:C567025","UMLS:C5774181","DOID:0060842","MEDGEN:1823955","OMIM:611038"],"synonyms":[{"name":"MCOP3","type":"exact"},{"name":"RAX isolated microphthalmia","type":"exact"},{"name":"isolated microphthalmia 3","type":"exact"},{"name":"isolated microphthalmia caused by mutation in RAX","type":"exact"},{"name":"isolated microphthalmia caused by mutation in rax","type":"exact"},{"name":"isolated microphthalmia type 3","type":"exact"},{"name":"microphthalmia, isolated 3","type":"related"},{"name":"microphthalmia, isolated type 3","type":"exact"},{"name":"rax isolated microphthalmia","type":"exact"}],"termid":"MONDO:0012604","xrefs":{"Monarch":{"xref_id":"0012604"}}}


id: PBO:0060637
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NCMAP divergent transcript","termid":"PBO:0060637"}


id: MONDO:0007661
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A neurologic disorder caused by defective metabolism of the neurotransmitters in the brain. It is characterized by repeated involuntary movements (motor tics) and uncontrollable vocal sounds (vocal tics). The symptoms are usually manifested before the age of eighteen.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"tic disorder","termid":"MONDO:0002420"},{"relation_name":"is_a","term_name":"movement disorder","termid":"MONDO:0005395"},{"relation_name":"is_a","term_name":"hereditary neurological disease","termid":"MONDO:0100545"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Tourette syndrome","secondary_identifiers":["MESH:D005879","DOID:11119","MEDGEN:21219","NCIT:C35078","OMIM:137580","UMLS:C0040517","Orphanet:856","EFO:0004895","icd11.foundation:119340957","ICD9:307.23","SCTID:5158005"],"synonyms":[{"name":"GTS","type":"related"},{"name":"Gilles De 50A Tourette syndrome","type":"related"},{"name":"Gilles de la Tourette syndrome","type":"related"},{"name":"Guinon's disease","type":"exact"},{"name":"Tourette disease","type":"exact"},{"name":"Tourette disorder","type":"related"},{"name":"Tourette syndrome","type":"exact"},{"name":"Tourette's syndrome","type":"exact"},{"name":"chronic motor tics","type":"related"},{"name":"motor-verbal tic disorder","type":"exact"},{"name":"psychogenic tics","type":"exact"}],"termid":"MONDO:0007661","xrefs":{"Monarch":{"xref_id":"0007661"}}}


id: PBO:0034136
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-has_2D_boundary","termid":"PBO:0034136"}


id: GO:0010561
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the rate, frequency, or extent of the chemical reactions and pathways resulting in the formation of a glycoprotein, a protein that contains covalently bound glycose (i.e. monosaccharide) residues; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of macromolecule biosynthetic process","termid":"GO:0010558"},{"relation_name":"is_a","term_name":"regulation of glycoprotein biosynthetic process","termid":"GO:0010559"},{"relation_name":"is_a","term_name":"negative regulation of glycoprotein metabolic process","termid":"GO:1903019"},{"relation_name":"negatively_regulates","term_name":"glycoprotein biosynthetic process","termid":"GO:0009101"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of glycoprotein biosynthetic process","termid":"GO:0010561"}


id: PBO:0027269
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-RNA_absent_from_cell_during_cellular_response_to_copper_ion_starvation","termid":"PBO:0027269"}


id: PBO:0046077
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"eukaryotic translation initiation factor 4A1 pseudogene 2","termid":"PBO:0046077"}


id: PBO:0055047
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2462","termid":"PBO:0055047"}


id: PR:Q9P6I0
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An asparagine--tRNA ligase, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO02355"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"asparagine--tRNA ligase, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1198.10c","secondary_identifiers":["UniProtKB:Q9P6I0"],"synonyms":[{"name":"AsnRS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-NARS2","type":"exact"},{"name":"asparaginyl-tRNA synthetase (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9P6I0"}


id: SO:0000122
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A folded RNA sequence.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sequence_secondary_structure","termid":"SO:0000002"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA_sequence_secondary_structure","synonyms":[{"name":"RNA sequence secondary structure","type":"exact"}],"termid":"SO:0000122"}


id: GO:2000979
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of forebrain neuron differentiation.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of neuron differentiation","termid":"GO:0045666"},{"relation_name":"is_a","term_name":"regulation of forebrain neuron differentiation","termid":"GO:2000977"},{"relation_name":"positively_regulates","term_name":"forebrain neuron differentiation","termid":"GO:0021879"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of forebrain neuron differentiation","termid":"GO:2000979"}


id: PATO:0000342
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000342 gametophyte compatible value (obsolete PATO:0000342)","termid":"PATO:0000342"}


id: PBO:0061977
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 2 subfamily AQ member 1 pseudogene","termid":"PBO:0061977"}


id: MONDO:0007311
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A rare subtype of CMT1 characterized by a variable clinical presentation. Onset within the first two years of life with a delay in walking is not uncommon; however, onset may occur later. CMT1E is caused by point mutations in the PMP22 (17p12) gene. The disease severity depends on the particular PMP22 mutation, with some cases being very mild and even resembling hereditary neuropathy with liability to pressure palsies, while others having an earlier onset with a more severe phenotype (reminiscent of Dejerine-Sottas syndrome) than that seen in CMT1A, caused by gene duplication. These severe cases may also report deafness and much slower motor nerve conduction velocities compared to CMT1A patients.","definition_xrefs":["Orphanet:90658"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Charcot-Marie-Tooth disease type 1","termid":"MONDO:0019011"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244"],"is_obsolete":false,"name":"Charcot-Marie-Tooth disease type 1E","secondary_identifiers":["UMLS:C3495591","GARD:9190","icd11.foundation:1924906594","DOID:0110153","MEDGEN:501212","MESH:C537986","OMIM:118300"],"synonyms":[{"name":"CMT 1E","type":"related"},{"name":"CMT1E","type":"exact"},{"name":"Charcot Marie Tooth disease type 1E","type":"related"},{"name":"Charcot-Marie-Tooth disease and deafness","type":"exact"},{"name":"Charcot-Marie-Tooth disease demyelinating type 1E","type":"exact"},{"name":"Charcot-Marie-Tooth disease, demyelinating, type 1E","type":"related"},{"name":"Charcot-Marie-Tooth disease, type 1E","type":"exact"},{"name":"Charcot-Marie-Tooth disease-deafness","type":"exact"},{"name":"Charcot-Marie-Tooth disease-deafness syndrome","type":"exact"},{"name":"Charcot-Marie-Tooth neuropathy and deafness, autosomal dominant","type":"related"},{"name":"autosomal dominant Charcot-Marie-Tooth neuropathy and deafness","type":"exact"}],"termid":"MONDO:0007311","xrefs":{"Monarch":{"xref_id":"0007311"}}}


id: PBO:0064296
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"perilipin 4","termid":"PBO:0064296"}


id: GO:0070050
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The cellular homeostatic process that preserves a neuron in a stable, differentiated functional and structural state.","definition_xrefs":["GOC:BHF","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular homeostasis","termid":"GO:0019725"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"neuron cellular homeostasis","synonyms":[{"name":"neuron maintenance","type":"exact"}],"termid":"GO:0070050"}


id: PBO:0087268
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ser/Thr protein kinase; phosphorylates Pan1p-Sla1p-End3p protein complex subunits, Pan1p and Sla1p; involved in regulation of the cortical actin cytoskeleton and endocytosis; functional overlap with PRK1","termid":"PBO:0087268"}


id: GO:0008115
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H2O + O2 + sarcosine = formaldehyde + glycine + H2O2.","definition_xrefs":["EC:1.5.3.1","RHEA:13313"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor","termid":"GO:0016647"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"sarcosine oxidase activity","secondary_identifiers":["MetaCyc:SARCOX-RXN","KEGG_REACTION:R00610"],"synonyms":[{"name":"sarcosine:oxygen oxidoreductase (demethylating)","type":"related"}],"termid":"GO:0008115"}


id: PBO:0027041
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_chromatin_binding_at_heat-shock-inducible_genes_during_cellular_response_to_heat_shock","termid":"PBO:0027041"}


id: FYPO:0005205
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the rate or occurrence of DNA polymerase processivity factor activity is increased.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal DNA polymerase processivity factor activity","termid":"FYPO:0004499"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"}],"interesting_parent_ids":["FYPO:0000707","FYPO:0000652","FYPO:0001985"],"is_obsolete":false,"name":"increased DNA polymerase processivity factor activity","termid":"FYPO:0005205"}


id: PBO:0082788
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the TOM (Translocase of Outer Membrane) complex; responsible for initial import of mitochondrially directed proteins; mediates interaction between TOM and TIM complexes and acts as receptor for precursor proteins; implicated in mitochondrial accumulation of amyloid β (Aβ) peptides via direct interaction with Aβ peptide residues 25-42 followed by transfer to Tom40p and transport through the TOM channel","termid":"PBO:0082788"}


id: GO:0007478
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the anatomical structures derived from the leg disc are generated and organized. This includes the transformation of a leg imaginal disc from a monolayered epithelium in the larvae of holometabolous insects into recognizable adult structures including the leg, coxa and ventral thoracic pleura.","definition_xrefs":["GOC:bf","ISBN:0879694238"],"direct_ancestors":[{"relation_name":"is_a","term_name":"imaginal disc morphogenesis","termid":"GO:0007560"},{"relation_name":"part_of","term_name":"leg disc development","termid":"GO:0035218"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"leg disc morphogenesis","synonyms":[{"name":"leg disc metamorphosis","type":"exact"}],"termid":"GO:0007478"}


id: PATO:0001866
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A spheroid quality inhering in a bearer by virtue of the bearer's exhibiting a polar diameter longer than its equatorial diameter.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/Prolate"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spheroid","termid":"PATO:0001865"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"prolate","secondary_identifiers":["Image:http\\://upload.wikimedia.org/wikipedia/commons/8/88/ProlateSpheroid.png"],"synonyms":[{"name":"prolate spheroid","type":"related"}],"termid":"PATO:0001866"}


id: GO:1902091
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents or reduces the frequency, rate or extent of fumagillin biosynthetic process.","definition_xrefs":["GOC:TermGenie","GOC:di","PMID:23488861"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of biosynthetic process","termid":"GO:0009890"},{"relation_name":"is_a","term_name":"negative regulation of small molecule metabolic process","termid":"GO:0062014"},{"relation_name":"is_a","term_name":"regulation of fumagillin biosynthetic process","termid":"GO:1902090"},{"relation_name":"negatively_regulates","term_name":"fumagillin biosynthetic process","termid":"GO:1902086"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"negatively_regulates","termid":"GO:0019748"},{"rel_name":"regulates","termid":"GO:0044281"},{"rel_name":"negatively_regulates","termid":"GO:0044281"},{"rel_name":"regulates","termid":"GO:0019748"}],"interesting_parent_ids":["GO:0044281","GO:0019748","GO:0008150"],"is_obsolete":false,"name":"negative regulation of fumagillin biosynthetic process","synonyms":[{"name":"down regulation of fumagillin anabolism","type":"exact"},{"name":"down regulation of fumagillin biosynthesis","type":"exact"},{"name":"down regulation of fumagillin biosynthetic process","type":"exact"},{"name":"down regulation of fumagillin formation","type":"exact"},{"name":"down regulation of fumagillin synthesis","type":"exact"},{"name":"down-regulation of fumagillin anabolism","type":"exact"},{"name":"down-regulation of fumagillin biosynthesis","type":"exact"},{"name":"down-regulation of fumagillin biosynthetic process","type":"exact"},{"name":"down-regulation of fumagillin formation","type":"exact"},{"name":"down-regulation of fumagillin synthesis","type":"exact"},{"name":"downregulation of fumagillin anabolism","type":"exact"},{"name":"downregulation of fumagillin biosynthesis","type":"exact"},{"name":"downregulation of fumagillin biosynthetic process","type":"exact"},{"name":"downregulation of fumagillin formation","type":"exact"},{"name":"downregulation of fumagillin synthesis","type":"exact"},{"name":"inhibition of fumagillin anabolism","type":"exact"},{"name":"inhibition of fumagillin biosynthesis","type":"exact"},{"name":"inhibition of fumagillin biosynthetic process","type":"narrow"},{"name":"inhibition of fumagillin formation","type":"exact"},{"name":"inhibition of fumagillin synthesis","type":"exact"},{"name":"negative regulation of fumagillin anabolism","type":"exact"},{"name":"negative regulation of fumagillin biosynthesis","type":"exact"},{"name":"negative regulation of fumagillin formation","type":"exact"},{"name":"negative regulation of fumagillin synthesis","type":"exact"}],"termid":"GO:1902091"}


id: PBO:0035767
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_histone_H2A_phosphorylation_at_rDNA_during_vegetative_growth","termid":"PBO:0035767"}


id: PBO:0027097
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-increased_number_of_Rad52_foci_at_rDNA_replication_pause_sites","termid":"PBO:0027097"}


id: MONDO:0009753
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete neurovisceral storage disease with Curvilinear bodies (obsolete MONDO:0009753)","secondary_identifiers":["MESH:C564944","OMIM:257000"],"synonyms":[{"name":"neurovisceral storage disease with Curvilinear bodies","type":"exact"}],"termid":"MONDO:0009753","xrefs":{"Monarch":{"xref_id":"0009753"}}}


id: PBO:0058783
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 7152","termid":"PBO:0058783"}


id: GO:0035469
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Determination of the asymmetric location of the pancreas with respect to the left and right halves of the organism.","definition_xrefs":["PMID:12702646","GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"determination of left/right symmetry","termid":"GO:0007368"},{"relation_name":"part_of","term_name":"pancreas development","termid":"GO:0031016"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"determination of pancreatic left/right asymmetry","termid":"GO:0035469"}


id: PBO:0081559
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"zinc finger protein 483","termid":"PBO:0081559"}


id: GO:0046276
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of methylgallate, trihydroxymethylbenzoate, the anion of methylgallic acid.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methylgallate metabolic process","termid":"GO:0019489"},{"relation_name":"is_a","term_name":"catechol-containing compound catabolic process","termid":"GO:0019614"},{"relation_name":"is_a","term_name":"monocarboxylic acid catabolic process","termid":"GO:0072329"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0044281"],"is_obsolete":false,"name":"methylgallate catabolic process","secondary_identifiers":["MetaCyc:METHYLGALLATE-DEGRADATION-PWY"],"synonyms":[{"name":"methylgallate breakdown","type":"exact"},{"name":"methylgallate catabolism","type":"exact"},{"name":"methylgallate degradation","type":"exact"}],"termid":"GO:0046276"}


id: PBO:0054790
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2203","termid":"PBO:0054790"}


id: GO:0048099
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Formation and/or maintenance of a lineage boundary between anterior and posterior compartments that cells cannot cross, thus separating the populations of cells in each compartment.","definition_xrefs":["GOC:jid","PMID:9374402","PMID:10625531"],"direct_ancestors":[{"relation_name":"is_a","term_name":"imaginal disc lineage restriction","termid":"GO:0035161"},{"relation_name":"part_of","term_name":"anterior/posterior pattern specification, imaginal disc","termid":"GO:0007448"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"anterior/posterior lineage restriction, imaginal disc","termid":"GO:0048099"}


id: PomGeneEx:0000006
data:
  {"annotation_feature_type":"gene","cv_name":"PomGeneEx","definition":"A gene expression qualifier that indicates that an RNA or protein is not detectable under a given set of conditions or at an indicated time.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"gene expression qualifier","termid":"PomGeneEx:0000001"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"absent","synonyms":[{"name":"gene expression absent","type":"exact"},{"name":"gene product absent","type":"exact"}],"termid":"PomGeneEx:0000006"}


id: PBO:0114286
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mon1-Ccz1 GEF complex subunit Ccz1","termid":"PBO:0114286"}


id: PBO:0073928
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"solute carrier family 17 member 1","termid":"PBO:0073928"}


id: MONDO:0033007
data:
  {"annotated_genes":["SJAG_04182"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87061],"is_not":false,"summary":null,"term":"MONDO:0033007"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Galloway-Mowat syndrome","termid":"MONDO:0009627"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04182":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025"],"is_obsolete":false,"name":"Galloway-Mowat syndrome 3","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["DOID:0080245","MEDGEN:1627611","OMIM:617729","UMLS:C4540266","GARD:16247"],"synonyms":[{"name":"GAMOS3","type":"related"},{"name":"Galloway-Mowat syndrome 3","type":"exact"}],"termid":"MONDO:0033007","terms_by_termid":{"MONDO:0033007":null},"xrefs":{"Monarch":{"xref_id":"0033007"}}}


id: GO:0051705
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which an organism has a behavioral effect on another organism of the same or different species.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete multi-organism behavior (obsolete GO:0051705)","synonyms":[{"name":"behavioral interaction between organisms","type":"exact"},{"name":"behavioral interaction with other organism","type":"exact"},{"name":"behavioral signaling","type":"narrow"},{"name":"behavioral signalling","type":"narrow"},{"name":"behavioural interaction between organisms","type":"exact"},{"name":"behavioural interaction with other organism","type":"exact"}],"termid":"GO:0051705"}


id: PBO:0012846
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exosome subunit Rrp46","termid":"PBO:0012846"}


id: PBO:0030009
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-RNA_absent_from_cell","termid":"PBO:0030009"}


id: GO:0075264
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate or extent of oogonium development, a process that leads to the formation of a female gametangium of oomycetes, containing one or more gametes.","definition_xrefs":["GOC:pamgo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of spore-bearing organ development","termid":"GO:0075260"},{"relation_name":"regulates","term_name":"oogonium development","termid":"GO:0075263"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of oogonium development","termid":"GO:0075264"}


id: PBO:0003026
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"acetamidase (predicted)","termid":"PBO:0003026"}


id: PBO:0082881
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cyanamide hydratase that detoxifies cyanamide; member of the HD domain metalloprotein superfamily; expression is induced over 100-fold by cyanamide and by SN2-type DNA alkylating agents such as MMS and DMA; induction decreased in rad6 and rad18 mutants; gene and protein are identical to DDI2 and Ddi2p","termid":"PBO:0082881"}


id: internal:exact
data:
  {"annotation_feature_type":"gene","cv_name":"synonym_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exact","termid":"internal:exact"}


id: PBO:0087117
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Ribosome biogenesis factor required for maturation of 18S rRNA; null mutant is sensitive to hydroxyurea and is delayed in recovering from alpha-factor arrest; green fluorescent protein (GFP)-fusion protein localizes to the nucleolus","termid":"PBO:0087117"}


id: MONDO:0700104
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Respiratory system disorder that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"non-human animal disease","termid":"MONDO:0005583"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"respiratory system disorder, non-human animal","termid":"MONDO:0700104","xrefs":{"Monarch":{"xref_id":"0700104"}}}


id: FYPO:0001992
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype in which a cell contains a single septum, has one nucleus, is elongated, and is inviable. The septum is in an abnormal location, and the nucleus is located in one compartment of the septated cell.","definition_xrefs":["PomBase:vw","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inviable mononucleate vegetative cell with mislocalized septum and anucleate compartment","termid":"FYPO:0001226"},{"relation_name":"is_a","term_name":"inviable elongated mononucleate monoseptate vegetative cell","termid":"FYPO:0001917"},{"relation_name":"is_a","term_name":"inviable elongated vegetative cell with abnormal septum","termid":"FYPO:0002889"},{"relation_name":"output_of","term_name":"cut","termid":"FYPO:0000229"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000005"},{"rel_name":"output_of","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"output_of","termid":"FYPO:0000337"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000005"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0000138"},{"rel_name":"output_of","termid":"FYPO:0000032"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"output_of","termid":"FYPO:0000631"},{"rel_name":"output_of","termid":"FYPO:0000004"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0000631","FYPO:0000005","FYPO:0000032","FYPO:0005447","FYPO:0000337","FYPO:0000004","FYPO:0001985","FYPO:0000138","FYPO:0000002","FYPO:0000641"],"is_obsolete":false,"name":"inviable elongated mononucleate vegetative cell with mislocalized septum","secondary_identifiers":["FYPO:0001993"],"synonyms":[{"name":"inviable elongated mononucleate cell with abnormal septum location","type":"exact"},{"name":"inviable elongated mononucleate cell with abnormal septum position","type":"exact"},{"name":"inviable elongated mononucleate cell with asymmetric septum","type":"exact"},{"name":"inviable elongated mononucleate cell with asymmetrically located septum","type":"exact"},{"name":"inviable elongated mononucleate cell with mislocalised septum","type":"exact"},{"name":"inviable elongated mononucleate cell with mislocalized septum during vegetative growth","type":"exact"},{"name":"inviable elongated mononucleate monoseptate vegetative cell with mislocalized septum","type":"exact"},{"name":"inviable elongated mononucleate vegetative cell with mislocalized septum and mislocalized nucleus","type":"exact"},{"name":"inviable elongated mononucleate vegetative cell with mislocalized septum during mitotic cell cycle","type":"related"},{"name":"inviable elongated mononucleate vegetative cell with misplaced septum","type":"exact"},{"name":"inviable elongated mononucleate vegetative cell with single mislocalized septum","type":"exact"},{"name":"inviable long mononucleate cell with mislocalized septum","type":"exact"},{"name":"inviable vegetative elongated mononucleate cell with mislocalized septum","type":"exact"},{"name":"lethal; elongated mononucleate vegetative cell with mislocalized septum","type":"exact"}],"termid":"FYPO:0001992"}


id: GO:0030618
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A TGF-beta cytoplasmic mediator that is phosphorylated by a TGFbeta receptor and complexes with a common-partner mediator. The- heterocomplex translocates to the nucleus to regulate transcription.","definition_xrefs":["GOC:hjd"],"gene_count":0,"genotype_count":0,"name":"obsolete transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity (obsolete GO:0030618)","synonyms":[{"name":"TGF-beta receptor, pathway-specific cytoplasmic mediator activity","type":"exact"},{"name":"TGFbeta receptor, pathway-specific cytoplasmic mediator activity","type":"exact"},{"name":"pathway restricted SMAD protein","type":"related"},{"name":"pathway-restricted SMAD protein","type":"related"},{"name":"pathway-specific SMAD protein","type":"related"},{"name":"receptor regulated SMAD protein","type":"related"},{"name":"receptor-regulated SMAD protein","type":"related"}],"termid":"GO:0030618"}


id: GO:0051370
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Binding to Z-band alternatively spliced PDZ motif protein (ZASP). ZASP is a Z-band protein specifically expressed in heart and skeletal muscle. This protein contains N-terminal PDZ domain and C-terminal LIM domain.","definition_xrefs":["PMID:10427098","PMID:11699871"],"gene_count":0,"genotype_count":0,"name":"obsolete ZASP binding (obsolete GO:0051370)","synonyms":[{"name":"Z-band alternatively spliced PDZ-motif protein binding","type":"exact"},{"name":"ZASP binding","type":"exact"}],"termid":"GO:0051370"}


id: PBO:0047338
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fibulin 7","termid":"PBO:0047338"}


id: PBO:0076735
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"t-complex 10 like","termid":"PBO:0076735"}


id: PR:P36583
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- pck2 gene.","definition_xrefs":["PRO:DNx","UniProtKB:P36583"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein kinase C-like 2 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC12D12.04c","synonyms":[{"name":"Spom972h-pck2","type":"exact"}],"termid":"PR:P36583"}


id: PBO:0026889
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-translation_regulation_phenotype_during_vegetative_growth","termid":"PBO:0026889"}


id: GO:1901251
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of lung goblet cell differentiation.","definition_xrefs":["GOC:BHF","GOC:TermGenie"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of epithelial cell differentiation","termid":"GO:0030858"},{"relation_name":"is_a","term_name":"positive regulation of multicellular organismal process","termid":"GO:0051240"},{"relation_name":"is_a","term_name":"regulation of lung goblet cell differentiation","termid":"GO:1901249"},{"relation_name":"positively_regulates","term_name":"lung goblet cell differentiation","termid":"GO:0060480"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of lung goblet cell differentiation","synonyms":[{"name":"activation of lung goblet cell differentiation","type":"narrow"},{"name":"activation of pulmonary goblet cell differentiation","type":"narrow"},{"name":"positive regulation of pulmonary goblet cell differentiation","type":"exact"},{"name":"up regulation of lung goblet cell differentiation","type":"exact"},{"name":"up regulation of pulmonary goblet cell differentiation","type":"exact"},{"name":"up-regulation of lung goblet cell differentiation","type":"exact"},{"name":"up-regulation of pulmonary goblet cell differentiation","type":"exact"},{"name":"upregulation of lung goblet cell differentiation","type":"exact"},{"name":"upregulation of pulmonary goblet cell differentiation","type":"exact"}],"termid":"GO:1901251"}


id: PBO:0086167
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein required for spore wall maturation; expressed during sporulation; may be a component of the spore wall; expression also induced in cells treated with the mycotoxin patulin; SPS100 has a paralog, YGP1, that arose from the whole genome duplication","termid":"PBO:0086167"}


id: GO:0001162
data:
  {"annotated_genes":["SJAG_03519"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[109534],"is_not":false,"summary":null,"term":"GO:0001162"}]},"cv_name":"molecular_function","definition":"Binding to an RNA polymerase II intronic DNA sequence that regulates the transcription of the transcript it is contained within.","definition_xrefs":["GOC:txnOH"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA polymerase II transcription regulatory region sequence-specific DNA binding","termid":"GO:0000977"},{"relation_name":"is_a","term_name":"intronic transcription regulatory region sequence-specific DNA binding","termid":"GO:0001161"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03519":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0000976"},{"rel_name":"is_a","termid":"GO:0003677"},{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0003677","GO:0005488","GO:0000976"],"is_obsolete":false,"name":"RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0001162","terms_by_termid":{"GO:0001162":null}}


id: GO:1903252
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways involving hercynylcysteine sulfoxide.","definition_xrefs":["PMID:24828577","GO_REF:0000068","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete hercynylcysteine sulfoxide metabolic process (obsolete GO:1903252)","synonyms":[{"name":"hercynylcysteine sulfoxide metabolism","type":"exact"}],"termid":"GO:1903252"}


id: PBO:0044272
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"C-X-C motif chemokine ligand 12","termid":"PBO:0044272"}


id: MOD:00447
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively results from forming an adduct with a glucuronic acid either through a carboxyl group amide or ester bond, or through C1-glycosylation.","definition_xrefs":["PubMed:7398618","Unimod:54#N-term","DeltaMass:0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycoconjugated residue","termid":"MOD:00764"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00764"}],"interesting_parent_ids":["MOD:00764"],"is_obsolete":false,"name":"N-glucuronylated residue","synonyms":[{"name":"Glucuronyl","type":"related"},{"name":"N-Glucuronyl (N terminus)","type":"exact"},{"name":"N-glucuronylation","type":"related"}],"termid":"MOD:00447"}


id: PBO:0065231
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich 12","termid":"PBO:0065231"}


id: PBO:0072452
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S29 pseudogene 16","termid":"PBO:0072452"}


id: MONDO:0005774
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A condition resulting from infection by Burkholderia mallei, which mainly affects horses.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary bacterial infectious disease","termid":"MONDO:0000314"},{"relation_name":"is_a","term_name":"burkholderia infectious disease","termid":"MONDO:0043953"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glanders","secondary_identifiers":["ICD9:024","ICD10CM:A24.0","DOID:13444","UMLS:C0017589","MEDGEN:42221","MESH:D005896","Orphanet:659908","icd11.foundation:1563156715","NCIT:C34638","SCTID:4639008","EFO:0007286"],"synonyms":[{"name":"Burkholderia mallei","type":"related"},{"name":"Burkholderia mallei caused disease or disorder","type":"exact"},{"name":"Burkholderia mallei disease or disorder","type":"exact"},{"name":"Burkholderia mallei infection","type":"related"},{"name":"Burkholderia mallei infectious disease","type":"exact"},{"name":"farcy pipes","type":"exact"},{"name":"infection due to Pseudomonas mallei","type":"exact"}],"termid":"MONDO:0005774","xrefs":{"Monarch":{"xref_id":"0005774"}}}


id: SO:0000723
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Genomic sequence removed from the genome, as a normal event, by a process of recombination.","definition_xrefs":["SO:ma"],"direct_ancestors":[{"relation_name":"is_a","term_name":"recombination_feature","termid":"SO:0000298"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"iDNA","synonyms":[{"name":"INSDC_feature:iDNA","type":"exact"},{"name":"intervening DNA","type":"exact"}],"termid":"SO:0000723"}


id: MONDO:0017057
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete hereditary thrombocytopenia with normal platelets (obsolete MONDO:0017057)","secondary_identifiers":["Orphanet:268322"],"termid":"MONDO:0017057","xrefs":{"Monarch":{"xref_id":"0017057"}}}


id: MONDO:0004668
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A parasitic infection that is caused by liver flukes, usually Fasciola hepatica, of sheep, goats, and cattle. Humans become infected by eating uncooked, infested aquatic vegetation (classically watercress). adult flukes inhabit the bile ducts, gallbladder, and occasionally ectopic sites. Symptoms arise secondary to inflammatory response or obstruction.","definition_xrefs":["NCIT:C128387"],"direct_ancestors":[{"relation_name":"is_a","term_name":"helminthiasis","termid":"MONDO:0004664"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fascioliasis","secondary_identifiers":["MEDGEN:41969","ICD10CM:B66.3","ICD9:121.3","MESH:D005211","UMLS:C0015652","EFO:1001324","DOID:885","icd11.foundation:656408831","SCTID:82308007"],"synonyms":[{"name":"Fasciolosis","type":"exact"},{"name":"fasciola hepatica infection","type":"exact"},{"name":"infection by fasciola","type":"exact"},{"name":"liver flukes","type":"exact"},{"name":"sheep liver fluke infection","type":"exact"}],"termid":"MONDO:0004668","xrefs":{"Monarch":{"xref_id":"0004668"}}}


id: GO:0039659
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which a virus stops, prevents, or reduces the activity of the host TBK1-IKBKE-DDX3 complex.","definition_xrefs":["VZ:719"],"gene_count":0,"genotype_count":0,"name":"obsolete suppression by virus of host TBK1-IKBKE-DDX3 complex activity (obsolete GO:0039659)","synonyms":[{"name":"inhibition of host TBK1-IKBKE-DDX3 complex by virus","type":"exact"},{"name":"suppression by virus of host TBK1-IKKE-DDX3 complex activity","type":"exact"}],"termid":"GO:0039659"}


id: GO:1901433
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of response to cycloalkane.","definition_xrefs":["GOC:TermGenie","GOC:mengo_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of response to stimulus","termid":"GO:0048584"},{"relation_name":"is_a","term_name":"regulation of response to cycloalkane","termid":"GO:1901431"},{"relation_name":"positively_regulates","term_name":"response to cycloalkane","termid":"GO:0014071"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of response to cycloalkane","synonyms":[{"name":"activation of response to cycloalkane","type":"narrow"},{"name":"up regulation of response to cycloalkane","type":"exact"},{"name":"up-regulation of response to cycloalkane","type":"exact"},{"name":"upregulation of response to cycloalkane","type":"exact"}],"termid":"GO:1901433"}


id: PBO:0069017
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 261, pseudogene","termid":"PBO:0069017"}


id: PBO:0110830
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DNA-binding transcription factor Prt1","termid":"PBO:0110830"}


id: MOD:00182
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively converts an L-histidine residue to L-bromohistidine.","definition_xrefs":["PubMed:2076468","RESID:AA0173","PubMed:9033387","Unimod:340#H"],"direct_ancestors":[{"relation_name":"is_a","term_name":"halogenated histidine","termid":"MOD:01049"},{"relation_name":"is_a","term_name":"monobrominated residue","termid":"MOD:01912"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"L-bromohistidine","synonyms":[{"name":"Br1His","type":"exact"},{"name":"Bromo","type":"related"},{"name":"L-bromohistidine","type":"exact"},{"name":"MOD_RES Bromohistidine","type":"exact"},{"name":"bromination","type":"related"}],"termid":"MOD:00182"}


id: PBO:0087275
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SET domain protein of unknown function; deletion heterozygote is sensitive to compounds that target ergosterol biosynthesis, may be involved in compound availability","termid":"PBO:0087275"}


id: PBO:0043189
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4","termid":"PBO:0043189"}


id: GO:0072430
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The series of events in which information about damage to DNA is received and converted into a molecular signal, contributing to a mitotic cell cycle G1/S transition DNA damage checkpoint.","definition_xrefs":["GOC:mtg_cell_cycle"],"gene_count":0,"genotype_count":0,"name":"obsolete detection of DNA damage stimulus involved in mitotic G1 DNA damage checkpoint (obsolete GO:0072430)","synonyms":[{"name":"detection of DNA damage stimulus involved in mitotic cell cycle G1/S transition DNA damage checkpoint","type":"exact"},{"name":"mitotic cell cycle G1/S transition DNA damage checkpoint sensor mechanism","type":"related"},{"name":"mitotic cell cycle G1/S transition DNA damage checkpoint sensor process","type":"related"},{"name":"sensing involved in mitotic cell cycle G1/S transition DNA damage checkpoint","type":"related"}],"termid":"GO:0072430"}


id: PBO:0054883
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2297","termid":"PBO:0054883"}


id: SO:0000534
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Genomic DNA of immunoglobulin/T-cell receptor gene in germline configuration including at least one V-gene and one J-gene.","direct_ancestors":[{"relation_name":"has_part","term_name":"V_gene_segment","termid":"SO:0000466"},{"relation_name":"has_part","term_name":"J_gene_segment","termid":"SO:0000470"},{"relation_name":"is_a","term_name":"vertebrate_immunoglobulin_T_cell_receptor_gene_cluster","termid":"SO:0000482"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"V_J_cluster","synonyms":[{"name":"V J cluster","type":"exact"},{"name":"V-J-CLUSTER","type":"exact"}],"termid":"SO:0000534"}


id: PBO:0028823
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abnormal_microtubule_cytoskeleton_morphology","termid":"PBO:0028823"}


id: GO:0002504
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an antigen-presenting cell expresses antigen (peptide or polysaccharide) on its cell surface in association with an MHC class II protein complex.","definition_xrefs":["GOC:add","ISBN:0781735149","PMID:15531770","PMID:16153240","PMID:15771591"],"direct_ancestors":[{"relation_name":"is_a","term_name":"antigen processing and presentation","termid":"GO:0019882"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"antigen processing and presentation of peptide or polysaccharide antigen via MHC class II","synonyms":[{"name":"peptide or polysaccharide antigen processing and presentation of via MHC class II","type":"exact"}],"termid":"GO:0002504"}


id: PBO:0070149
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U7 small nuclear 63 pseudogene","termid":"PBO:0070149"}


id: PBO:0048232
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"G antigen 2C","termid":"PBO:0048232"}


id: SO:0000115
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","gene_count":0,"genotype_count":0,"name":"OBSOLETE SO:0000115 transcript_feature (obsolete SO:0000115)","termid":"SO:0000115"}


id: GO:0035448
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The component of a thylakoid membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.","definition_xrefs":["GOC:bf","GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"extrinsic component of membrane","termid":"GO:0019898"},{"relation_name":"part_of","term_name":"thylakoid membrane","termid":"GO:0042651"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"extrinsic component of thylakoid membrane","synonyms":[{"name":"extrinsic to thylakoid membrane","type":"narrow"},{"name":"peripheral to thylakoid membrane","type":"exact"}],"termid":"GO:0035448"}


id: GO:0031357
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"OBSOLETE. The component of the chloroplast inner membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.","definition_xrefs":["GOC:mah","GOC:dos"],"gene_count":0,"genotype_count":0,"name":"obsolete integral component of chloroplast inner membrane (obsolete GO:0031357)","synonyms":[{"name":"integral to chloroplast inner membrane","type":"narrow"}],"termid":"GO:0031357"}


id: GO:0120324
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The morphological, biochemical and genetic changes that induce the differentiation of bloodstream form trypomastigotes into procyclic trypomastigotes in some of the Trypanosomatidae species such as Trypanosoma brucei. This process occurs inside the midgut of the tsetse fly vectors in T. brucei.","definition_xrefs":["GOC:ach","PMID:3194362","PMID:10593184","PMID:17997129","PMID:1698624","PMID:3194363"],"direct_ancestors":[{"relation_name":"is_a","term_name":"development of symbiont in host","termid":"GO:0044114"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"procyclogenesis","termid":"GO:0120324"}


id: PBO:0042830
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"centrin 3","termid":"PBO:0042830"}


id: GO:0043594
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"The outer membrane around a bacterial endospore, located between the endospore cortex and endospore coat.","definition_xrefs":["GOC:mlg"],"direct_ancestors":[{"relation_name":"is_a","term_name":"outer membrane","termid":"GO:0019867"},{"relation_name":"part_of","term_name":"endospore external encapsulating structure","termid":"GO:0043591"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005618"}],"interesting_parent_ids":["GO:0005575","GO:0005618"],"is_obsolete":false,"name":"outer endospore membrane","termid":"GO:0043594"}


id: PBO:0002401
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"trans-aconitate 3-methyltransferase (predicted)","termid":"PBO:0002401"}


id: MONDO:0010969
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any cone-rod dystrophy in which the cause of the disease is a mutation in the PITPNM3 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cone-rod dystrophy","termid":"MONDO:0015993"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"cone-rod dystrophy 5","secondary_identifiers":["DOID:0111010","OMIM:600977","MEDGEN:322083","MESH:C563415","GARD:10655","UMLS:C1832976"],"synonyms":[{"name":"CORD5","type":"exact"},{"name":"PITPNM3 cone-rod dystrophy","type":"exact"},{"name":"cone-rod dystrophy 5","type":"exact"},{"name":"cone-rod dystrophy caused by mutation in PITPNM3","type":"exact"},{"name":"cone-rod dystrophy type 5","type":"exact"}],"termid":"MONDO:0010969","xrefs":{"Monarch":{"xref_id":"0010969"}}}


id: PR:Q10366
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A phosphatidylinositol 4-kinase beta that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR10048:SF22","OMA:SCHPO02103"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"phosphatidylinositol 4-kinase pik1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC22E12.16c","secondary_identifiers":["UniProtKB:Q10366"],"synonyms":[{"name":"PI4-kinase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"PtdIns-4-kinase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-PI4KB","type":"exact"}],"termid":"PR:Q10366"}


id: PBO:0028845
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-abolished_protein_localization_to_Mmi1_focus","termid":"PBO:0028845"}


id: PBO:0080102
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"UTP14A small subunit processome component","termid":"PBO:0080102"}


id: PR:P78870
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- fmd1 gene.","definition_xrefs":["UniProtKB:P78870","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"S-(hydroxymethyl)glutathione dehydrogenase 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC1539.07c","synonyms":[{"name":"FALDH 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"FDH 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"FLD 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"GSH-FDH 1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-fmd1","type":"exact"},{"name":"glutathione-dependent formaldehyde dehydrogenase 1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:P78870"}


id: PBO:0063169
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PAX interacting protein 1","termid":"PBO:0063169"}


id: GO:1900110
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that stops, prevents or reduces the frequency, rate or extent of histone H3-K9 dimethylation.","definition_xrefs":["GOC:vw","GOC:TermGenie"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation of histone H3-K9 dimethylation (obsolete GO:1900110)","synonyms":[{"name":"down regulation of histone H3 K9 dimethylation","type":"exact"},{"name":"down regulation of histone H3-K9 dimethylation","type":"exact"},{"name":"down regulation of histone lysine H3 K9 dimethylation","type":"exact"},{"name":"down-regulation of histone H3 K9 dimethylation","type":"exact"},{"name":"down-regulation of histone H3-K9 dimethylation","type":"exact"},{"name":"down-regulation of histone lysine H3 K9 dimethylation","type":"exact"},{"name":"downregulation of histone H3 K9 dimethylation","type":"exact"},{"name":"downregulation of histone H3-K9 dimethylation","type":"exact"},{"name":"downregulation of histone lysine H3 K9 dimethylation","type":"exact"},{"name":"inhibition of histone H3 K9 dimethylation","type":"narrow"},{"name":"inhibition of histone H3-K9 dimethylation","type":"narrow"},{"name":"inhibition of histone lysine H3 K9 dimethylation","type":"narrow"},{"name":"negative regulation of histone H3 K9 dimethylation","type":"exact"},{"name":"negative regulation of histone lysine H3 K9 dimethylation","type":"exact"}],"termid":"GO:1900110"}


id: MONDO:0859248
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"},{"relation_name":"is_a","term_name":"corneal dystrophy","termid":"MONDO:0018102"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"corneal dystrophy, punctiform and polychromatic pre-descemet","secondary_identifiers":["OMIM:619871","UMLS:C5676982","MEDGEN:1806182"],"termid":"MONDO:0859248","xrefs":{"Monarch":{"xref_id":"0859248"}}}


id: GO:0000176
data:
  {"annotated_genes":["SJAG_04084","SJAG_00854","SJAG_04824","SJAG_01818","SJAG_01521","SJAG_01431","SJAG_04006","SJAG_03179","SJAG_04321","SJAG_04153","SJAG_01191","SJAG_04818","SJAG_03745"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[72374,73081,73384,74214,74980,75216,76099,76366,76852,78030,79474,102944,117442],"is_not":false,"summary":null,"term":"GO:0000176"}]},"cv_name":"cellular_component","definition":"A ribonuclease complex that has 3-prime to 5-prime processive and distributive hydrolytic exoribonuclease activity and endoribonuclease activity, producing 5-prime-phosphomonoesters. Participates in a multitude of cellular RNA processing and degradation events preventing nuclear export and/or translation of aberrant RNAs. Restricted to processing linear and circular single-stranded RNAs (ssRNA) only. RNAs with complex secondary structures may have to be unwound or pre-processed by co-factors prior to entering the complex, esp if the 3-prime end is structured.","definition_xrefs":["PMID:20531386","PMID:17174896","PMID:26726035"],"direct_ancestors":[{"relation_name":"is_a","term_name":"exosome (RNase complex)","termid":"GO:0000178"},{"relation_name":"is_a","term_name":"nuclear protein-containing complex","termid":"GO:0140513"},{"relation_name":"part_of","term_name":"nuclear lumen","termid":"GO:0031981"}],"gene_count":13,"genes_by_uniquename":{"SJAG_00854":null,"SJAG_01191":null,"SJAG_01431":null,"SJAG_01521":null,"SJAG_01818":null,"SJAG_03179":null,"SJAG_03745":null,"SJAG_04006":null,"SJAG_04084":null,"SJAG_04153":null,"SJAG_04321":null,"SJAG_04818":null,"SJAG_04824":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005634"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0005634","GO:0032991"],"is_obsolete":false,"name":"nuclear exosome (RNase complex)","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"eukaryotic exosome multienzyme ribonuclease complex","type":"exact"},{"name":"nuclear exosome (ribonuclease complex)","type":"exact"},{"name":"nuclear exosome multienzyme ribonuclease complex","type":"exact"}],"termid":"GO:0000176","terms_by_termid":{"GO:0000176":null}}


id: PR:Q9HDV9
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A glycine cleavage system H protein, mitochondrial that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["OMA:SCHPO03446","PRO:DNx","PANTHER:PTHR11715:SF0"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glycine cleavage system H protein, mitochondrial (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBP19A11.01","secondary_identifiers":["UniProtKB:Q9HDV9"],"synonyms":[{"name":"Spom972h-GCSH","type":"exact"},{"name":"glycine decarboxylase complex subunit H (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q9HDV9"}


id: PBO:0000716
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"target genes transcriptionally co-regulated by Cdk9","termid":"PBO:0000716"}


id: MONDO:0033554
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"T-B- severe combined immunodeficiency","termid":"MONDO:0017855"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046"],"is_obsolete":false,"name":"immunodeficiency 73b with defective neutrophil chemotaxis and lymphopenia","secondary_identifiers":["OMIM:618986","DOID:0112061","UMLS:C5436549","MEDGEN:1740566"],"synonyms":[{"name":"IMD73B","type":"exact"},{"name":"immunodeficiency 73b with defective neutrophil chemotaxis and lymphopenia","type":"exact"}],"termid":"MONDO:0033554","xrefs":{"Monarch":{"xref_id":"0033554"}}}


id: PBO:0048348
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"glyceraldehyde-3-phosphate dehydrogenase pseudogene 59","termid":"PBO:0048348"}


id: SO:0002087
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A non functional descendant of the coding portion of a coding transcript, part of a pseudogene.","definition_xrefs":["SO:ke"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pseudogenic_region","termid":"SO:0000462"},{"relation_name":"part_of","term_name":"pseudogenic_transcript","termid":"SO:0000516"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pseudogenic_CDS","synonyms":[{"name":"INSDC_feature:CDS","type":"broad"},{"name":"INSDC_qualifier:pseudo","type":"exact"},{"name":"pseudogenic CDS","type":"exact"}],"termid":"SO:0002087"}


id: GO:0102931
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-trans,6-trans-farnesyl diphosphate = (Z,E)-alpha-farnesene + diphosphoric acid.","definition_xrefs":["PMID:17140613","GOC:pz"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on phosphates","termid":"GO:0016838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016829"}],"interesting_parent_ids":["GO:0016829","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"(Z,E)-alpha- farnesene synthase activity","secondary_identifiers":["MetaCyc:RXN-8931"],"termid":"GO:0102931"}


id: GO:0047353
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: N-methylethanolamine phosphate + CTP = CDP-N-methylethanolamine + diphosphate.","definition_xrefs":["RHEA:10576","EC:2.7.7.57"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cytidylyltransferase activity","termid":"GO:0070567"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016779"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016740","GO:0016779","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"N-methylphosphoethanolamine cytidylyltransferase activity","secondary_identifiers":["KEGG_REACTION:R03375","MetaCyc:2.7.7.57-RXN"],"synonyms":[{"name":"CTP:N-methylethanolamine-phosphate cytidylyltransferase activity","type":"related"},{"name":"CTP:N-methylphosphoethanolamine cytidylyltransferase activity","type":"exact"},{"name":"CTP:P-MEA cytidylyltransferase activity","type":"related"},{"name":"monomethylethanolamine phosphate cytidylyltransferase activity","type":"related"}],"termid":"GO:0047353"}


id: PBO:0078407
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Gly (anticodon CCC) 2-1","termid":"PBO:0078407"}


id: GO:0018280
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A protein glycosylation process in which a carbohydrate or carbohydrate derivative unit is added to a protein via a sulfur atom of a peptidyl-amino-acid such as cysteine or methionine.","definition_xrefs":["GOC:jsg","GOC:pr","GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein glycosylation","termid":"GO:0006486"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006486"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006486"],"is_obsolete":false,"name":"protein S-linked glycosylation","synonyms":[{"name":"protein amino acid S-linked glycosylation","type":"exact"}],"termid":"GO:0018280"}


id: MONDO:0019699
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete slender bone dysplasia (obsolete MONDO:0019699)","secondary_identifiers":["Orphanet:93440","icd11.foundation:691657602"],"termid":"MONDO:0019699","xrefs":{"Monarch":{"xref_id":"0019699"}}}


id: GO:0061073
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the ciliary body generated and organized. The ciliary body is the circumferential tissue inside the eye composed of the ciliary muscle and ciliary processes.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure morphogenesis","termid":"GO:0009653"},{"relation_name":"part_of","term_name":"camera-type eye morphogenesis","termid":"GO:0048593"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"ciliary body morphogenesis","termid":"GO:0061073"}


id: MONDO:0001744
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"The sudden increase of intraocular pressure, resulting in pain and an abrupt decrease in visual acuity.","definition_xrefs":["NCIT:C34639"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glaucoma","termid":"MONDO:0005041"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"angle-closure glaucoma","secondary_identifiers":["DOID:13550","MESH:D015812","MEDGEN:6610","SCTID:392291006","UMLS:C0017605"],"synonyms":[{"name":"ACG - angle-closure glaucoma","type":"exact"},{"name":"Narrow cleft glaucoma","type":"exact"},{"name":"angle closure glaucoma","type":"exact"},{"name":"primary open-angle glaucoma with narrow angles","type":"exact"}],"termid":"MONDO:0001744","xrefs":{"Monarch":{"xref_id":"0001744"}}}


id: GO:0047645
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: primary alcohol + acceptor = aldehyde + reduced acceptor.","definition_xrefs":["MetaCyc:ALKAN-1-OL-DEHYDROGENASE-ACCEPTOR-RXN","EC:1.1.99.20"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on CH-OH group of donors","termid":"GO:0016614"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016491","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"alkan-1-ol dehydrogenase (acceptor) activity","secondary_identifiers":["RHEA:14685"],"synonyms":[{"name":"alkan-1-ol:(acceptor) oxidoreductase activity","type":"related"},{"name":"alkan-1-ol:acceptor oxidoreductase activity","type":"related"},{"name":"polyethylene glycol dehydrogenase activity","type":"narrow"}],"termid":"GO:0047645"}


id: SO:0000382
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A group II intron that recognizes IBS1/EBS1 and IBS2/EBS2 for the 5-prime exon and IBS3/EBS3 for the 3-prime exon.","definition_xrefs":["PMID:20463000"],"direct_ancestors":[{"relation_name":"is_a","term_name":"group_II_intron","termid":"SO:0000603"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"group_IIB_intron","synonyms":[{"name":"group IIB intron","type":"exact"}],"termid":"SO:0000382"}


id: MONDO:0016011
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Fetal alcohol syndrome (FAS) is a rare malformation syndrome caused by excessive maternal consumption of alcohol during pregnancy. It is characterized by prenatal and/or postnatal growth deficiency (weight and/or height <10th percentile), a unique cluster of minor facial anomalies (short palpebral fissures, flat and smooth philtrum, and thin upper lip) and severe central nervous system (CNS) abnormalities including microcephaly, and cognitive and behavioral impairment (intellectual disability, deficit in general cognition, learning and language, executive function, visual-spatial processing, memory, and attention).","definition_xrefs":["Orphanet:1915"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fetal alcohol spectrum disorder","termid":"MONDO:0000408"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"toxic or drug-related embryofetopathy","termid":"MONDO:0016677"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fetal alcohol syndrome","secondary_identifiers":["NCIT:C84713","MEDGEN:8820","SCTID:205788004","DOID:0050667","GARD:599","MedDRA:10016845","icd11.foundation:362980699","DOID:0050665","UMLS:C0015923"],"synonyms":[{"name":"ARBD","type":"exact"},{"name":"ARND","type":"exact"},{"name":"FAS","type":"exact"},{"name":"FASD","type":"broad"},{"name":"alcohol-related birth defects","type":"related"},{"name":"alcohol-related neurodevelopmental disorder","type":"exact"},{"name":"fetal alcohol spectrum disorders","type":"broad"},{"name":"foetal alcohol spectrum disorders","type":"broad"},{"name":"static encephalopathy","type":"related"}],"termid":"MONDO:0016011","xrefs":{"Monarch":{"xref_id":"0016011"}}}


id: GO:0042300
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (S)-2,3-epoxysqualene = beta-amyrin.","definition_xrefs":["RHEA:31007","PMID:9746369"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidosqualene cyclase activity","termid":"GO:0031559"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016853","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"beta-amyrin synthase activity","secondary_identifiers":["MetaCyc:RXN-7570","EC:5.4.99.39"],"synonyms":[{"name":"2,3-oxidosqualene beta-amyrin cyclase","type":"exact"},{"name":"oxidosqualene:beta-amyrin cyclase activity","type":"exact"}],"termid":"GO:0042300"}


id: GO:0005261
data:
  {"annotated_genes":["SJAG_05342","SJAG_07003","SJAG_01090","SJAG_00985","SJAG_00438","SJAG_02322","SJAG_02105","SJAG_04668","SJAG_04122","SJAG_MIT15","SJAG_00915","SJAG_02532","SJAG_05229","SJAG_03925","SJAG_03114","SJAG_MIT37","SJAG_00133","SJAG_00542","SJAG_05204","SJAG_00836","SJAG_02019","SJAG_04471","SJAG_02564","SJAG_03895","SJAG_02598","SJAG_MIT09","SJAG_02877"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[79053,74193,116437],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005262"},{"annotations":[81647,74811],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0005227"},{"annotations":[76230],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0008331"},{"annotations":[105689],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0140135"},{"annotations":[77605,79934,58016,74513,71937,95735,81132,103736,109766,71644,79610,96725,121108,95144,121101,121095,109858],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0046933"},{"annotations":[115921,94267,94209,101530],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0015275"}]},"cv_name":"molecular_function","definition":"Enables the energy-independent facilitated diffusion of a monoatomic cation through a transmembrane aqueous pore or channel.","definition_xrefs":["ISBN:0815340729","GOC:mtg_transport","GOC:pr","GOC:def","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monoatomic ion channel activity","termid":"GO:0005216"},{"relation_name":"is_a","term_name":"monoatomic cation transmembrane transporter activity","termid":"GO:0008324"}],"gene_count":27,"genes_by_uniquename":{"SJAG_00133":null,"SJAG_00438":null,"SJAG_00542":null,"SJAG_00836":null,"SJAG_00915":null,"SJAG_00985":null,"SJAG_01090":null,"SJAG_02019":null,"SJAG_02105":null,"SJAG_02322":null,"SJAG_02532":null,"SJAG_02564":null,"SJAG_02598":null,"SJAG_02877":null,"SJAG_03114":null,"SJAG_03895":null,"SJAG_03925":null,"SJAG_04122":null,"SJAG_04471":null,"SJAG_04668":null,"SJAG_05204":null,"SJAG_05229":null,"SJAG_05342":null,"SJAG_07003":null,"SJAG_MIT09":null,"SJAG_MIT15":null,"SJAG_MIT37":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0022857","GO:0005215"],"is_obsolete":false,"name":"monoatomic cation channel activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0015338","GO:0015281","Reactome:R-HSA-4420052","Reactome:R-HSA-426223","Reactome:R-HSA-9712190","Reactome:R-HSA-9754616","Reactome:R-HSA-9706720","Reactome:R-HSA-2089943","Reactome:R-HSA-1296043","Reactome:R-HSA-169683","Reactome:R-HSA-9837835","Reactome:R-HSA-1168376"],"synonyms":[{"name":"cation channel activity","type":"broad"},{"name":"cation diffusion facilitator activity","type":"exact"},{"name":"non-selective cation channel activity","type":"narrow"}],"termid":"GO:0005261","terms_by_termid":{"GO:0005227":null,"GO:0005262":null,"GO:0008331":null,"GO:0015275":null,"GO:0046933":null,"GO:0140135":null}}


id: GO:0044373
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to a cytokinin, any of a class of adenine-derived compounds that can function in plants as growth regulators.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hormone binding","termid":"GO:0042562"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"cytokinin binding","termid":"GO:0044373"}


id: PBO:0050291
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HNF4A antisense RNA 1","termid":"PBO:0050291"}


id: GO:0035002
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The clearance of liquid from the epithelial tubes of an open tracheal system, shortly before the emergence of the larva, to generate an air-filled tubule system.","definition_xrefs":["PMID:12571352","GOC:mtg_sensu"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial fluid transport","termid":"GO:0042045"},{"relation_name":"part_of","term_name":"open tracheal system development","termid":"GO:0007424"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0008150","GO:0051179","GO:0006810"],"is_obsolete":false,"name":"liquid clearance, open tracheal system","synonyms":[{"name":"tracheal liquid clearance","type":"exact"}],"termid":"GO:0035002"}


id: FYPO:0006413
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of one or more histone RNAs measured in a cell is higher than normal (i.e. lower than observed in wild-type cells). Histone RNAs are transcribed from genes encoding histones.","definition_xrefs":["PomBase:mah","PMID:17452352"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased RNA level during vegetative growth","termid":"FYPO:0000825"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0005447","FYPO:0001320","FYPO:0006551"],"is_obsolete":false,"name":"increased level of histone gene mRNA during vegetative growth","synonyms":[{"name":"increased histone gene mRNA accumulation during vegetative growth","type":"related"},{"name":"increased level of histone gene RNA during vegetative growth","type":"exact"},{"name":"increased level of histone gene mRNA during mitotic cell cycle","type":"related"},{"name":"increased level of histone gene transcripts during vegetative growth","type":"exact"}],"termid":"FYPO:0006413"}


id: GO:0051839
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which an organism modulates the frequency, rate or extent of the cytolysis by that organism of cells in its symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:add"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation by host of cytolysis of symbiont cells (obsolete GO:0051839)","termid":"GO:0051839"}


id: GO:0046917
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: ATP + 3-dephospho-CoA = 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA + adenine.","definition_xrefs":["EC:2.4.2.52"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phosphotransferase activity, for other substituted phosphate groups","termid":"GO:0016780"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016780"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0016780","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"triphosphoribosyl-dephospho-CoA synthase activity","secondary_identifiers":["MetaCyc:2.7.8.25-RXN","RHEA:15117"],"synonyms":[{"name":"2'-(5''-triphosphoribosyl)-3-dephospho-CoA synthase activity","type":"related"},{"name":"ATP:3-dephospho-CoA 5''-triphosphoribosyltransferase activity","type":"exact"},{"name":"ATP:dephospho-CoA 5-triphosphoribosyl transferase activity","type":"exact"},{"name":"CitG activity","type":"related"}],"termid":"GO:0046917"}


id: GO:0102838
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 1-18:1-2-16:2-monogalactosyldiacylglycerol + O2 + a reduced electron acceptor = 1-18:2-2-16:2-monogalactosyldiacylglycerol + 2 H2O + an oxidized electron acceptor.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete 1-18:1-2-16:2-monogalactosyldiacylglycerol desaturase activity (obsolete GO:0102838)","termid":"GO:0102838"}


id: GO:2001290
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving a hydroperoxide.","definition_xrefs":["PMID:18084891","GOC:rs","PMID:15917183"],"direct_ancestors":[{"relation_name":"is_a","term_name":"metabolic process","termid":"GO:0008152"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hydroperoxide metabolic process","synonyms":[{"name":"hydroperoxide metabolism","type":"exact"}],"termid":"GO:2001290"}


id: MONDO:0013542
data:
  {"annotated_genes":["SJAG_03145"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87789],"is_not":false,"summary":null,"term":"MONDO:0013542"}]},"cv_name":"mondo","definition":"Any Moyamoya disease in which the cause of the disease is a mutation in the ACTA2 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Moyamoya disease","termid":"MONDO:0016820"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03145":null},"genotype_count":0,"is_obsolete":false,"name":"Moyamoya disease 5","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C3279690","OMIM:614042","MEDGEN:481320","GARD:15746"],"synonyms":[{"name":"ACTA2 Moyamoya disease","type":"exact"},{"name":"MYMY5","type":"related"},{"name":"Moyamoya disease 5","type":"exact"},{"name":"Moyamoya disease caused by mutation in ACTA2","type":"exact"},{"name":"Moyamoya disease type 5","type":"exact"}],"termid":"MONDO:0013542","terms_by_termid":{"MONDO:0013542":null},"xrefs":{"Monarch":{"xref_id":"0013542"}}}


id: GO:1901886
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of 2-hydroxybenzoyl-CoA.","definition_xrefs":["GOC:TermGenie","PMID:19757094"],"direct_ancestors":[{"relation_name":"is_a","term_name":"phenol-containing compound catabolic process","termid":"GO:0019336"},{"relation_name":"is_a","term_name":"sulfur compound catabolic process","termid":"GO:0044273"},{"relation_name":"is_a","term_name":"purine-containing compound catabolic process","termid":"GO:0072523"},{"relation_name":"is_a","term_name":"nucleoside phosphate catabolic process","termid":"GO:1901292"},{"relation_name":"is_a","term_name":"2-hydroxybenzoyl-CoA metabolic process","termid":"GO:1901885"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0006790"}],"interesting_parent_ids":["GO:0055086","GO:0008150","GO:0044281","GO:0006790"],"is_obsolete":false,"name":"2-hydroxybenzoyl-CoA catabolic process","synonyms":[{"name":"2-hydroxybenzoyl-CoA breakdown","type":"exact"},{"name":"2-hydroxybenzoyl-CoA catabolism","type":"exact"},{"name":"2-hydroxybenzoyl-CoA degradation","type":"exact"}],"termid":"GO:1901886"}


id: PBO:0086008
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein of unknown function; subunit of the leading edge protein (LEP) complex (Ssp1-Ady3-Don1-Irc10) that forms a ring-like structure at the leading edge of the prospore membrane during meiosis II; null mutant displays increased levels of spontaneous Rad52p foci","termid":"PBO:0086008"}


id: PBO:0069049
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 295, pseudogene","termid":"PBO:0069049"}


id: GO:0016869
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of an amino group from one position to another within a single molecule.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular transferase activity","termid":"GO:0016866"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0016853","GO:0003824"],"is_obsolete":false,"name":"intramolecular aminotransferase activity","secondary_identifiers":["EC:5.4.3.-"],"synonyms":[{"name":"intramolecular transferase activity, transferring amino groups","type":"exact"}],"termid":"GO:0016869"}


id: MONDO:0013544
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any familial atrial fibrillation in which the cause of the disease is a mutation in the GJA5 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"familial atrial fibrillation","termid":"MONDO:0018054"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"atrial fibrillation, familial, 11","secondary_identifiers":["GARD:15747","MEDGEN:481323","UMLS:C3279693","OMIM:614049"],"synonyms":[{"name":"ATFB11","type":"related"},{"name":"GJA5 familial atrial fibrillation","type":"exact"},{"name":"atrial fibrillation, familial, 11","type":"exact"},{"name":"atrial fibrillation, familial, type 11","type":"exact"},{"name":"familial atrial fibrillation caused by mutation in GJA5","type":"exact"}],"termid":"MONDO:0013544","xrefs":{"Monarch":{"xref_id":"0013544"}}}


id: PBO:0038627
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"atypical chemokine receptor 3","termid":"PBO:0038627"}


id: PBO:0090481
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"CENP-A chaperone, CHD family Hrp1","termid":"PBO:0090481"}


id: PBO:0038473
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP binding cassette subfamily A member 11, pseudogene","termid":"PBO:0038473"}


id: GO:2000883
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of starch catabolic process.","definition_xrefs":["GOC:obol"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of catabolic process","termid":"GO:0009896"},{"relation_name":"is_a","term_name":"regulation of starch catabolic process","termid":"GO:2000881"},{"relation_name":"is_a","term_name":"positive regulation of starch metabolic process","termid":"GO:2000906"},{"relation_name":"positively_regulates","term_name":"starch catabolic process","termid":"GO:0005983"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"positively_regulates","termid":"GO:0005975"},{"rel_name":"regulates","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0005975","GO:0008150"],"is_obsolete":false,"name":"positive regulation of starch catabolic process","synonyms":[{"name":"positive regulation of starch breakdown","type":"exact"},{"name":"positive regulation of starch catabolism","type":"exact"},{"name":"positive regulation of starch degradation","type":"exact"}],"termid":"GO:2000883"}


id: GO:0098853
data:
  {"annotated_genes":["SJAG_04221"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[117201],"is_not":false,"summary":null,"term":"GO:0098853"}]},"cv_name":"cellular_component","definition":"A zone of apposition between endoplasmic-reticulum and lytic vacuole membranes, structured by bridging complexes.","definition_xrefs":["GOC:dos","PMID:26283797"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organelle membrane contact site","termid":"GO:0044232"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04221":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575"],"is_obsolete":false,"name":"endoplasmic reticulum-vacuole membrane contact site","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"ER-vacuole membrane contact site","type":"exact"}],"termid":"GO:0098853","terms_by_termid":{"GO:0098853":null}}


id: FYPO:0002800
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which protein degradation is normal (i.e. indistinguishable from wild type). Protein degradation, also known as protein catabolism, is any metabolic process that results in the destruction of the native, active configuration of a protein, with or without the hydrolysis of peptide bonds.","definition_xrefs":["GO:0030163","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal metabolic process during vegetative growth","termid":"FYPO:0000859"},{"relation_name":"is_a","term_name":"normal protein degradation","termid":"FYPO:0002799"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001312"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0001320","FYPO:0000002","FYPO:0001312"],"is_obsolete":false,"name":"normal protein degradation during vegetative growth","synonyms":[{"name":"normal protein breakdown during vegetative growth","type":"exact"},{"name":"normal protein catabolic process during vegetative growth","type":"exact"},{"name":"normal protein catabolism during vegetative growth","type":"exact"},{"name":"normal protein degradation during mitotic cell cycle","type":"related"}],"termid":"FYPO:0002800"}


id: PBO:0013826
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"autophagy protein Atg16","termid":"PBO:0013826"}


id: GO:0007509
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The migration of mesodermal cells during gastrulation to help establish the multilayered body plan of the organism.","definition_xrefs":["GOC:isa_complete","GOC:sat"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mesodermal cell migration","termid":"GO:0008078"},{"relation_name":"is_a","term_name":"cell migration involved in gastrulation","termid":"GO:0042074"},{"relation_name":"is_a","term_name":"tissue migration","termid":"GO:0090130"},{"relation_name":"part_of","term_name":"mesoderm formation","termid":"GO:0001707"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"mesoderm migration involved in gastrulation","termid":"GO:0007509"}


id: GO:0016880
data:
  {"annotated_genes":["SJAG_00359","SJAG_04544","SJAG_01845"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[78817],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0017178"},{"annotations":[61809,73236],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004356"}]},"cv_name":"molecular_function","definition":"Catalysis of the ligation of an acid to ammonia (NH3) or an amide via a carbon-nitrogen bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.","definition_xrefs":["GOC:mah","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ligase activity, forming carbon-nitrogen bonds","termid":"GO:0016879"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00359":null,"SJAG_01845":null,"SJAG_04544":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0016874","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"acid-ammonia (or amide) ligase activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null},"secondary_identifiers":["EC:6.3.1.-"],"synonyms":[{"name":"amide synthase activity","type":"exact"}],"termid":"GO:0016880","terms_by_termid":{"GO:0004356":null,"GO:0017178":null}}


id: PBO:0061083
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NK2 homeobox 2","termid":"PBO:0061083"}


id: GO:0032475
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that gives rise to an otolith. This process pertains to the initial formation of a structure from unspecified parts.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure formation involved in morphogenesis","termid":"GO:0048646"},{"relation_name":"part_of","term_name":"otolith morphogenesis","termid":"GO:0032474"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"otolith formation","termid":"GO:0032475"}


id: MONDO:0004168
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A morphologic variant of testicular seminoma characterized by the presence of seminoma cells arranged in cribriform patterns and few lymphocytes.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"testicular seminoma","termid":"MONDO:0003669"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"cribriform variant testicular seminoma","secondary_identifiers":["MEDGEN:308258","DOID:7269","NCIT:C40957","UMLS:C1515292"],"synonyms":[{"name":"testicular seminoma, cribriform variant","type":"exact"}],"termid":"MONDO:0004168","xrefs":{"Monarch":{"xref_id":"0004168"}}}


id: GO:0045137
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of the primary sexual characteristics over time, from their formation to the mature structures. The primary sexual characteristics are the testes in males and the ovaries in females and they develop in response to sex hormone secretion.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"part_of","term_name":"multicellular organism development","termid":"GO:0007275"},{"relation_name":"part_of","term_name":"sex differentiation","termid":"GO:0007548"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"development of primary sexual characteristics","termid":"GO:0045137"}


id: FYPO:0006602
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which replication fork arrest at the MPS1 barrier in the mating-type locus occurs to a lower extent than normal.","definition_xrefs":["PMID:26201080","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased replication fork arrest at mating-type locus","termid":"FYPO:0003085"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0000293"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000293","FYPO:0005447","FYPO:0001320","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"decreased replication fork arrest at MPS1 barrier","synonyms":[{"name":"decreased replication fork arrest at MPS1 barrier during mitotic cell cycle","type":"related"},{"name":"decreased replication fork arrest at MPS1 barrier during vegetative growth","type":"exact"},{"name":"decreased replication fork arrest at MPS1 element","type":"exact"},{"name":"reduced replication fork arrest at MPS1 barrier","type":"exact"}],"termid":"FYPO:0006602"}


id: FYPO:0005314
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to chromatin at promoters that contain MCB sites is decreased.","definition_xrefs":["PomBase:mah","PMID:26912660"],"direct_ancestors":[{"relation_name":"is_a","term_name":"decreased protein localization to chromatin during vegetative growth","termid":"FYPO:0002909"},{"relation_name":"is_a","term_name":"decreased protein localization to chromatin at promoter","termid":"FYPO:0007505"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0001320","FYPO:0005447","FYPO:0000138","FYPO:0000002"],"is_obsolete":false,"name":"decreased protein localization to chromatin at MCB promoters during vegetative growth","synonyms":[{"name":"decreased protein localisation to chromatin at MCB promoters during vegetative growth","type":"exact"},{"name":"decreased protein localization to chromatin at MCB promoters during mitotic cell cycle","type":"related"},{"name":"decreased protein localization to chromatin at MCB target genes during vegetative growth","type":"related"},{"name":"decreased protein localization to chromatin at MCB-containing promoters during vegetative growth","type":"exact"},{"name":"reduced protein localization to chromatin at MCB promoters during vegetative growth","type":"exact"}],"termid":"FYPO:0005314"}


id: SO:0001316
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"7-deazaguanosine is a modified guanosine.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_guanosine","termid":"SO:0001276"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"seven_deazaguanosine","synonyms":[{"name":"7-deazaguanosine","type":"related"},{"name":"seven deazaguanosine","type":"exact"}],"termid":"SO:0001316"}


id: GO:0021578
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A developmental process, independent of morphogenetic (shape) change, that is required for the hindbrain to attain its fully functional state. The hindbrain is the region consisting of the medulla, pons and cerebellum. Areas of the hindbrain control motor and autonomic functions.","definition_xrefs":["GOC:jid","ISBN:0838580343","GOC:dgh","GOC:dph","GO_REF:0000021","GOC:cls"],"direct_ancestors":[{"relation_name":"is_a","term_name":"anatomical structure maturation","termid":"GO:0071695"},{"relation_name":"part_of","term_name":"central nervous system maturation","termid":"GO:0021626"},{"relation_name":"part_of","term_name":"hindbrain development","termid":"GO:0030902"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"hindbrain maturation","termid":"GO:0021578"}


id: PBO:0079398
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TUBB4B pseudogene 5","termid":"PBO:0079398"}


id: MONDO:0001894
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A sarcoma that arises from the spinal cord.","definition_xrefs":["NCIT:C5152"],"direct_ancestors":[{"relation_name":"is_a","term_name":"central nervous system sarcoma","termid":"MONDO:0002217"},{"relation_name":"is_a","term_name":"spinal cord cancer","termid":"MONDO:0003544"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"spinal cord sarcoma","secondary_identifiers":["MEDGEN:233459","DOID:14152","UMLS:C1336049"],"synonyms":[{"name":"sarcoma of spinal cord","type":"exact"},{"name":"sarcoma of the spinal cord","type":"exact"},{"name":"spinal cord sarcoma","type":"exact"}],"termid":"MONDO:0001894","xrefs":{"Monarch":{"xref_id":"0001894"}}}


id: PBO:0073686
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"signaling threshold regulating transmembrane adaptor 1","termid":"PBO:0073686"}


id: MONDO:0008193
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"parkinsonian-pyramidal syndrome","termid":"MONDO:0009830"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paralysis agitans, juvenile, of Hunt","secondary_identifiers":["MESH:C562469","ICD9:333.0","SCTID:43647007","GARD:10359","MEDGEN:66768","UMLS:C0238344","OMIM:168100"],"synonyms":[{"name":"Parkinson disease, juvenile, of Hunt","type":"related"},{"name":"paralysis agitans, juvenile, of Hunt","type":"exact"}],"termid":"MONDO:0008193","xrefs":{"Monarch":{"xref_id":"0008193"}}}


id: MONDO:1012617
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any lysosomal storage disorder that occurs in dogs due to a mutation in the IDUA gene.","definition_xrefs":["MONDO:patterns/nonhuman_disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mucopolysaccharidosis or mucopolysaccharidosis-like disorder, non-human animal","termid":"MONDO:1012581"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mucopolysaccharidosis I, dog","secondary_identifiers":["OMIA:000664-9615"],"synonyms":[{"name":"Hurler syndrome, dog","type":"related"},{"name":"MPS I","type":"exact"}],"termid":"MONDO:1012617","xrefs":{"Monarch":{"xref_id":"1012617"}}}


id: PBO:0052219
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"potassium calcium-activated channel subfamily U member 1","termid":"PBO:0052219"}


id: MONDO:0018725
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"syndromic intellectual disability","termid":"MONDO:0000508"},{"relation_name":"is_a","term_name":"multiple congenital anomalies/dysmorphic syndrome-intellectual disability","termid":"MONDO:0015159"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"corpus callosum agenesis-macrocephaly-hypertelorism syndrome","secondary_identifiers":["Orphanet:459074","GARD:21918","UMLS:C5679998","MEDGEN:1801729"],"synonyms":[{"name":"7q36.3 microduplication syndrome","type":"exact"},{"name":"dup(7)(q36.3)","type":"exact"}],"termid":"MONDO:0018725","xrefs":{"Monarch":{"xref_id":"0018725"}}}


id: GO:0045964
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving dopamine.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of dopamine metabolic process","termid":"GO:0042053"},{"relation_name":"is_a","term_name":"positive regulation of catecholamine metabolic process","termid":"GO:0045915"},{"relation_name":"positively_regulates","term_name":"dopamine metabolic process","termid":"GO:0042417"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"positive regulation of dopamine metabolic process","synonyms":[{"name":"activation of dopamine metabolic process","type":"narrow"},{"name":"positive regulation of dopamine metabolism","type":"exact"},{"name":"stimulation of dopamine metabolic process","type":"narrow"},{"name":"up regulation of dopamine metabolic process","type":"exact"},{"name":"up-regulation of dopamine metabolic process","type":"exact"},{"name":"upregulation of dopamine metabolic process","type":"exact"}],"termid":"GO:0045964"}


id: PBO:0060911
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nexilin F-actin binding protein","termid":"PBO:0060911"}


id: GO:0031100
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The regrowth of a lost or destroyed animal organ.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regeneration","termid":"GO:0031099"},{"relation_name":"is_a","term_name":"animal organ development","termid":"GO:0048513"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"animal organ regeneration","termid":"GO:0031100"}


id: MONDO:0016004
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Aminopterin/Methotrexate embryofetopathy is a syndrome of developmental anomalies characterized by growth deficiency, facial dysmorphism and skull, limb and neural defects secondary to maternal exposure to aminopterin or methotrexate (MTX) during pregnancy.","definition_xrefs":["Orphanet:1908"],"direct_ancestors":[{"relation_name":"is_a","term_name":"toxic or drug-related embryofetopathy","termid":"MONDO:0016677"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"aminopterin/methotrexate embryofetopathy","secondary_identifiers":["ICD9:759.89","MEDGEN:98491","NCIT:C98928","MedDRA:10071183","SCTID:65986000","UMLS:C0432367"],"synonyms":[{"name":"aminopterin embryopathy syndrome","type":"exact"},{"name":"aminopterin fetopathy syndrome","type":"related"},{"name":"aminopterin syndrome","type":"related"},{"name":"fetal aminopterin syndrome","type":"exact"},{"name":"fetal methotrexate syndrome","type":"related"},{"name":"foetal aminopterin syndrome","type":"exact"},{"name":"foetal methotrexate syndrome","type":"related"}],"termid":"MONDO:0016004","xrefs":{"Monarch":{"xref_id":"0016004"}}}


id: PBO:0035913
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-decreased_rate_of_medial_membrane_band_assembly","termid":"PBO:0035913"}


id: FYPO:0007832
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the localization of a protein to the medial cortical nodes begins later than normal.","definition_xrefs":["PMID:33496728","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal protein localization to medial cortical node","termid":"FYPO:0003289"},{"relation_name":"is_a","term_name":"delayed onset of protein localization to cell division site","termid":"FYPO:0003946"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0005447","FYPO:0001985","FYPO:0000002","FYPO:0000138","FYPO:0001320"],"is_obsolete":false,"name":"delayed onset of protein localization to medial cortical node","synonyms":[{"name":"delayed onset of protein localisation to medial cortical node","type":"exact"},{"name":"delayed onset of protein localization to cortical medial dot","type":"exact"},{"name":"delayed onset of protein localization to cytokinetic nodes","type":"related"},{"name":"delayed onset of protein localization to medial cortical node during mitotic cell cycle","type":"related"},{"name":"delayed onset of protein localization to medial cortical node during vegetative growth","type":"exact"},{"name":"delayed protein localization to medial cortical node","type":"exact"}],"termid":"FYPO:0007832"}


id: PBO:0078654
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Lys (anticodon CTT) 7-1","termid":"PBO:0078654"}


id: PBO:0067150
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 200, pseudogene","termid":"PBO:0067150"}


id: MONDO:0022859
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A congenital anatomic anomaly in which the heart has only two chambers.","definition_xrefs":["NCIT:C124591"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heart disorder","termid":"MONDO:0005267"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"cor biloculare","secondary_identifiers":["SCTID:81990004","UMLS:C0152238","ICD9:745.7","MEDGEN:56271"],"synonyms":[{"name":"Cor Biloculare","type":"exact"},{"name":"TWO-chambered heart","type":"exact"},{"name":"absence of atrial and ventricular septa","type":"related"},{"name":"cor biloculare","type":"exact"}],"termid":"MONDO:0022859","xrefs":{"Monarch":{"xref_id":"0022859"}}}


id: PBO:0058942
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MIX23 pseudogene 1","termid":"PBO:0058942"}


id: PR:Q09730
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- sft1 gene.","definition_xrefs":["UniProtKB:Q09730","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein transport protein sft1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC31A2.13c","synonyms":[{"name":"Spom972h-sft1","type":"exact"}],"termid":"PR:Q09730"}


id: GO:0002045
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that modulates the frequency, rate or extent of attachment of a blood vessel endothelial cell to another cell or to the extracellular matrix involved in intussusceptive angiogenesis.","definition_xrefs":["PMID:16391003"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell adhesion","termid":"GO:0030155"},{"relation_name":"part_of","term_name":"intussusceptive angiogenesis","termid":"GO:0002041"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007155"}],"interesting_parent_ids":["GO:0007155","GO:0008150"],"is_obsolete":false,"name":"regulation of cell adhesion involved in intussusceptive angiogenesis","termid":"GO:0002045"}


id: MONDO:0018125
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Focal epilepsy-intellectual disability-cerebro-cerebellar malformation is a rare, genetic neurological disorder characterized by early infantile-onset of seizures, borderline to moderate intellectual disability, cerebellar features including dysarthria and ataxia and cerebellar atrophy and cortical thickening observed on MRI imaging. Seizures are typically focal (with prominent eye blinking, facial and limb jerking), precipitated by fever and often commence with an oral sensory aura (anesthetized tongue sensation). When not properly controlled by anti-epileptic medication, weekly frequency and persistence into adult life is observed.","definition_xrefs":["Orphanet:352587"],"direct_ancestors":[{"relation_name":"is_a","term_name":"monogenic epilepsy","termid":"MONDO:0015653"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"focal epilepsy-intellectual disability-cerebro-cerebellar malformation","secondary_identifiers":["GARD:21522","UMLS:C4707306","MEDGEN:1640999"],"synonyms":[{"name":"focal epilepsy-intellectual disability-dysarthria-ataxia syndrome","type":"exact"}],"termid":"MONDO:0018125","xrefs":{"Monarch":{"xref_id":"0018125"}}}


id: GO:1904759
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a protein is transported to, or maintained in, a location within an equatorial microtubule organizing center.","definition_xrefs":["GOC:TermGenie","PMID:16611237","GO_REF:0000087"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein localization to cell division site","termid":"GO:0072741"},{"relation_name":"is_a","term_name":"protein localization to microtubule organizing center","termid":"GO:1905508"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0051179","GO:0008150"],"is_obsolete":false,"name":"protein localization to equatorial microtubule organizing center","synonyms":[{"name":"protein localisation in equatorial microtubule organizing center","type":"exact"},{"name":"protein localisation to equatorial microtubule organizing center","type":"exact"},{"name":"protein localization in equatorial microtubule organizing center","type":"exact"},{"name":"protein localization to eMTOC","type":"exact"}],"termid":"GO:1904759"}


id: GO:0006034
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. The chemical reactions and pathways involving cuticle chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues, found in cuticles.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete cuticle chitin metabolic process (obsolete GO:0006034)","synonyms":[{"name":"cuticle chitin metabolism","type":"exact"}],"termid":"GO:0006034"}


id: MOD:01986
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cross-links an L-cysteine residue and an L-serine residue by a thioether bond to form 2-(S-L-cysteinyl)-L-serine.","definition_xrefs":["PubMed:21526839","RESID:AA0623"],"direct_ancestors":[{"relation_name":"is_a","term_name":"alpha-carbon thioether crosslinked residues","termid":"MOD:01992"},{"relation_name":"is_a","term_name":"crosslinked L-serine residue","termid":"MOD:02055"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"2-(L-cystein-S-yl)-L-serine","synonyms":[{"name":"(2R)-2-amino-2-([(2R)-2-amino-2-carboxyethyl]sulfanyl)-3-hydroxypropanoic acid","type":"exact"},{"name":"(2R,5R)-2,5-diamino-5-carboxy-6-hydroxy-4-thiahexanoic acid","type":"exact"}],"termid":"MOD:01986"}


id: GO:0102444
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: isorhamnetin + S-adenosyl-L-methionine = 3,3'-O-dimethylquercetin + H+ + S-adenosyl-L-homocysteine.","definition_xrefs":["RHEA:74759"],"direct_ancestors":[{"relation_name":"is_a","term_name":"methyltransferase activity","termid":"GO:0008168"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016741"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0016741","GO:0003674","GO:0016740"],"is_obsolete":false,"name":"isorhamnetin 3-O-methyltransferase activity","secondary_identifiers":["MetaCyc:RXN-13929"],"termid":"GO:0102444"}


id: PBO:0076189
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SUMO1 pseudogene 4","termid":"PBO:0076189"}


id: MONDO:0032913
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"congenital heart defects, multiple types, 7","secondary_identifiers":["OMIM:618780","UMLS:C5394062","MEDGEN:1714491"],"synonyms":[{"name":"CHTD7","type":"related"},{"name":"CONGENITAL HEART DEFECTS, MULTIPLE TYPES, 7","type":"related"}],"termid":"MONDO:0032913","xrefs":{"Monarch":{"xref_id":"0032913"}}}


id: PR:O13601
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- rsp1 gene.","definition_xrefs":["UniProtKB:O13601","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DnaJ-related protein rsp1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC11B10.05c","synonyms":[{"name":"Spom972h-rsp1","type":"exact"}],"termid":"PR:O13601"}


id: PR:O59832
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC965.12 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O59832"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized dipeptidase C965.12 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC965.12","synonyms":[{"name":"Spom972h-SPCC965.12","type":"exact"}],"termid":"PR:O59832"}


id: MONDO:0004917
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A hordeolum that results from infection of a meibomian gland.","direct_ancestors":[{"relation_name":"is_a","term_name":"hordeolum","termid":"MONDO:0005800"},{"relation_name":"is_a","term_name":"sebaceous gland disorder","termid":"MONDO:0006607"},{"relation_name":"is_a","term_name":"skin appendage disorder","termid":"MONDO:0024481"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0005328"],"is_obsolete":false,"name":"internal hordeolum","secondary_identifiers":["SCTID:414521009","UMLS:C0085690","DOID:9908","MEDGEN:43227","ICD9:373.12"],"synonyms":[{"name":"hordeolum internum","type":"related"},{"name":"hordeolum of tarsal gland","type":"exact"},{"name":"infected chalazion","type":"related"},{"name":"infected cyst of meibomian gland","type":"related"},{"name":"infected meibomian cyst","type":"related"},{"name":"infection of meibomian gland","type":"related"},{"name":"internal hordeolum","type":"exact"},{"name":"meibomian adenitis","type":"related"},{"name":"tarsal gland hordeolum","type":"exact"}],"termid":"MONDO:0004917","xrefs":{"Monarch":{"xref_id":"0004917"}}}


id: PBO:0055614
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 3053","termid":"PBO:0055614"}


id: MONDO:0018303
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete generalized isolated dystonia (obsolete MONDO:0018303)","termid":"MONDO:0018303","xrefs":{"Monarch":{"xref_id":"0018303"}}}


id: GO:0016920
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the release of the N-terminal pyroglutamyl group from a peptide or protein.","definition_xrefs":["GOC:mah","PMID:9920379"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cysteine-type peptidase activity","termid":"GO:0008234"},{"relation_name":"is_a","term_name":"omega peptidase activity","termid":"GO:0008242"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0008233"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016787","GO:0003674","GO:0140096","GO:0008233","GO:0003824"],"is_obsolete":false,"name":"pyroglutamyl-peptidase activity","termid":"GO:0016920"}


id: MONDO:1010024
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Atrial fibrillation that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"heart disorder, non-human animal","termid":"MONDO:1012982"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"atrial fibrillation, non-human animal","secondary_identifiers":["OMIA:001181"],"termid":"MONDO:1010024","xrefs":{"Monarch":{"xref_id":"1010024"}}}


id: GO:0061615
data:
  {"annotated_genes":["SJAG_04192","SJAG_04495","SJAG_00027","SJAG_03903","SJAG_02945","SJAG_03373","SJAG_00839","SJAG_02796","SJAG_00461","SJAG_02009","SJAG_00605","SJAG_04334","SJAG_01310","SJAG_02369","SJAG_06621","SJAG_02107","SJAG_03828","SJAG_03660","SJAG_06622","SJAG_02135"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[100159,111362,111360,111366,105563,96400,118353,99888,111361,107766,107396,111364,107395,111363,107765,105304,74209,107394,111365,79634],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0061621"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the breakdown of a monosaccharide into pyruvate, occurring through a fructose-6-phosphate intermediate, with the concomitant production of ATP and NADH.","definition_xrefs":["GOC:dph","ISBN:0201090910","ISBN:0879010479"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glycolytic process","termid":"GO:0006096"}],"gene_count":20,"genes_by_uniquename":{"SJAG_00027":null,"SJAG_00461":null,"SJAG_00605":null,"SJAG_00839":null,"SJAG_01310":null,"SJAG_02009":null,"SJAG_02107":null,"SJAG_02135":null,"SJAG_02369":null,"SJAG_02796":null,"SJAG_02945":null,"SJAG_03373":null,"SJAG_03660":null,"SJAG_03828":null,"SJAG_03903":null,"SJAG_04192":null,"SJAG_04334":null,"SJAG_04495":null,"SJAG_06621":null,"SJAG_06622":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0055086"},{"rel_name":"is_a","termid":"GO:0006091"},{"rel_name":"part_of","termid":"GO:0006091"}],"interesting_parent_ids":["GO:0008150","GO:0006091","GO:0044281","GO:0005975","GO:0055086"],"is_obsolete":false,"name":"glycolytic process through fructose-6-phosphate","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["MetaCyc:PWY-5484"],"synonyms":[{"name":"glycolysis through fructose-6-phosphate","type":"exact"}],"termid":"GO:0061615","terms_by_termid":{"GO:0061621":null}}


id: GO:0098706
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of iron ions from outside of a cell, across the cell outer membrane and into the periplasmic space.","definition_xrefs":["PMID:23192658","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"iron ion transmembrane transport","termid":"GO:0034755"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0055085"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006810","GO:0051179","GO:0008150","GO:0055085"],"is_obsolete":false,"name":"iron ion import across cell outer membrane","secondary_identifiers":["GO:0015683","GO:0097461"],"synonyms":[{"name":"ferric ion import into cell","type":"exact"},{"name":"ferric iron import across cell outer membrane","type":"narrow"},{"name":"ferric iron import into cell","type":"exact"},{"name":"ferric iron transmembrane transport","type":"broad"},{"name":"high affinity ferric iron transport","type":"narrow"},{"name":"high-affinity ferric iron transmembrane transport","type":"narrow"}],"termid":"GO:0098706"}


id: GO:0018617
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: 4-aminobenzenesulfonate + 2 H+ + O2 + 2 e- = NH3 + 4-sulfocatechol.","definition_xrefs":["UM-BBD_reactionID:r0580"],"gene_count":0,"genotype_count":0,"name":"obsolete 4-aminobenzenesulfonate 3,4-dioxygenase (deaminating) activity (obsolete GO:0018617)","synonyms":[{"name":"4-aminobenzenesulphonate 3,4-dioxygenase (deaminating) activity","type":"exact"}],"termid":"GO:0018617"}


id: PBO:0035827
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_movement_within_plasma_membrane_during_vegetative_growth","termid":"PBO:0035827"}


id: GO:0034633
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of retinol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Retinol is vitamin A1, 2,6,6-trimethyl-1-(9'-hydroxy-3',7'-dimethylnona-1',3',5',7'-tetraenyl)cyclohex-1-ene, one of the three components that makes up vitamin A.","definition_xrefs":["GOC:BHF","GOC:mah","GOC:vk"],"direct_ancestors":[{"relation_name":"is_a","term_name":"organic hydroxy compound transport","termid":"GO:0015850"},{"relation_name":"is_a","term_name":"terpenoid transport","termid":"GO:0046865"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0051179"}],"interesting_parent_ids":["GO:0006810","GO:0008150","GO:0051179"],"is_obsolete":false,"name":"retinol transport","synonyms":[{"name":"vitamin A1 transport","type":"exact"}],"termid":"GO:0034633"}


id: MONDO:0044238
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete lunulae of fingernails (obsolete MONDO:0044238)","secondary_identifiers":["OMIM:152600"],"synonyms":[{"name":"lunulae of fingernails","type":"related"}],"termid":"MONDO:0044238","xrefs":{"Monarch":{"xref_id":"0044238"}}}


id: PBO:0002708
data:
  {"annotation_feature_type":"gene","cv_name":"name_description","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Cofilin","termid":"PBO:0002708"}


id: FYPO:0003976
data:
  {"alleles_by_uniquename":{"SJAG_04464:allele-1":{"allele_type":"amino_acid_mutation","description":"R152C","gene_uniquename":"SJAG_04464","name":"pim1-R152C","synonyms":[{"name":"Inferred CDK-phospho-mimic mutation","reference":"PMID:28954740","type":"exact"}],"uniquename":"SJAG_04464:allele-1"}},"annotation_feature_type":"genotype","cv_annotations":{"single_locus_phenotype":[{"annotations":[121381],"is_not":false,"summary":null,"term":"FYPO:0003976"}]},"cv_name":"fission_yeast_phenotype","definition":"A cell morphology phenotype in which a vegetatively growing cell is inviable, and has a nuclear envelope that is broken into multiple small fragments during mitotic telophase.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"has_part","term_name":"inviable vegetative cell","termid":"FYPO:0001489"},{"relation_name":"has_part","term_name":"fragmented nuclear envelope","termid":"FYPO:0003975"},{"relation_name":"is_a","term_name":"inviable vegetative cell","termid":"FYPO:0001489"},{"relation_name":"is_a","term_name":"fragmented nuclear envelope","termid":"FYPO:0003975"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04464":null},"genotype_count":1,"genotypes_by_uniquename":{"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type":{"display_name":"pim1-R152C(aa)","display_uniquename":"pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type","loci":[{"expressed_alleles":[{"allele_uniquename":"SJAG_04464:allele-1","expression":"Not assayed or wild type"}]}]}},"interesting_parent_details":[{"rel_name":"has_part","termid":"FYPO:0002403"},{"rel_name":"is_a","termid":"FYPO:0002403"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001320"},{"rel_name":"output_of","termid":"FYPO:0001985"},{"rel_name":"has_part","termid":"FYPO:0000004"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000004"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"has_part","termid":"FYPO:0001320"},{"rel_name":"has_part","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0005447","FYPO:0000004","FYPO:0002403","FYPO:0001985","FYPO:0000002"],"is_obsolete":false,"name":"inviable vegetative cell with fragmented nuclear envelope during mitotic telophase","references_by_uniquename":{"PMID:28954740":null},"single_locus_annotated_genes":["SJAG_04464"],"single_locus_genotype_uniquenames":["pim1-R152C-R152C-amino_acid_mutation-expression-not_assayed_or_wild_type"],"synonyms":[{"name":"inviable cell with fragmented nuclear envelope during mitotic telophase during vegetative growth","type":"exact"},{"name":"inviable vegetative cell with fragmented nuclear envelope during telophase of mitotic cell cycle","type":"related"},{"name":"lethal; vegetative cell with fragmented nuclear envelope during mitotic telophase","type":"exact"}],"termid":"FYPO:0003976","terms_by_termid":{"FYECO:0000004":null,"FYPO:0003976":null}}


id: PBO:0045667
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DYNAP pseudogene 2","termid":"PBO:0045667"}


id: MONDO:0013537
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any autosomal recessive nonsyndromic deafness in which the cause of the disease is a mutation in the CLDN14 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hearing loss, autosomal recessive","termid":"MONDO:0019588"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0019497"},{"rel_name":"is_a","termid":"MONDO:0006025"}],"interesting_parent_ids":["MONDO:0006025","MONDO:0019497"],"is_obsolete":false,"name":"autosomal recessive nonsyndromic hearing loss 29","secondary_identifiers":["UMLS:C3279660","DOID:0110487","MEDGEN:481290","GARD:22641","OMIM:614035"],"synonyms":[{"name":"CLDN14 autosomal recessive nonsyndromic deafness","type":"narrow"},{"name":"DFNB29","type":"narrow"},{"name":"autosomal recessive deafness 29","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness 29","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness caused by mutation in CLDN14","type":"narrow"},{"name":"autosomal recessive nonsyndromic deafness type 29","type":"narrow"},{"name":"autosomal recessive nonsyndromic hearing loss 29","type":"exact"},{"name":"deafness, autosomal recessive 29","type":"narrow"},{"name":"deafness, autosomal recessive type 29","type":"narrow"}],"termid":"MONDO:0013537","xrefs":{"Monarch":{"xref_id":"0013537"}}}


id: GO:0035864
data:
  {"annotated_genes":["SJAG_01233"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[116678],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0035865"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a potassium ion stimulus.","definition_xrefs":["GOC:yaf"],"direct_ancestors":[{"relation_name":"is_a","term_name":"response to metal ion","termid":"GO:0010038"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01233":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"response to potassium ion","references_by_uniquename":{"GO_REF:0000107":null},"synonyms":[{"name":"response to K+ ion","type":"exact"},{"name":"response to potassium","type":"exact"}],"termid":"GO:0035864","terms_by_termid":{"GO:0035865":null}}


id: GO:0031328
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances, carried out by individual cells.","definition_xrefs":["GOC:mah"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of cellular biosynthetic process (obsolete GO:0031328)","synonyms":[{"name":"activation of cellular biosynthetic process","type":"narrow"},{"name":"positive regulation of cellular anabolism","type":"exact"},{"name":"positive regulation of cellular biosynthesis","type":"exact"},{"name":"positive regulation of cellular formation","type":"exact"},{"name":"positive regulation of cellular synthesis","type":"exact"},{"name":"stimulation of cellular biosynthetic process","type":"narrow"},{"name":"up regulation of cellular biosynthetic process","type":"exact"},{"name":"up-regulation of cellular biosynthetic process","type":"exact"},{"name":"upregulation of cellular biosynthetic process","type":"exact"}],"termid":"GO:0031328"}


id: PATO:0001881
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a bearer by virtue of the bearer's forming two equal obtuse triangles with a short side in common.","definition_xrefs":["ISBN:0881923214","RKC:RKC"],"direct_ancestors":[{"relation_name":"is_a","term_name":"shape","termid":"PATO:0000052"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"arrow-shaped","synonyms":[{"name":"sagittate","type":"exact"}],"termid":"PATO:0001881"}


id: PBO:0076768
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"TDRD6 and SLC25A27 antisense RNA 1","termid":"PBO:0076768"}


id: PBO:0045297
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"dynamin 1 pseudogene 49","termid":"PBO:0045297"}


id: MONDO:1011692
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hematologic disorder, non-human animal","termid":"MONDO:1011319"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein C deficiency, non-human animal","secondary_identifiers":["OMIA:000835"],"termid":"MONDO:1011692","xrefs":{"Monarch":{"xref_id":"1011692"}}}


id: PBO:0080774
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"XK related 5","termid":"PBO:0080774"}


id: GO:0052774
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: glucosyl-N-acetylglucosamine + H2O = glucosamine + N-acetylglucosamine.","definition_xrefs":["PMID:16736587","GOC:mengo_curators","PMID:15136574","PMID:16232910"],"direct_ancestors":[{"relation_name":"is_a","term_name":"hexosaminidase activity","termid":"GO:0015929"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016798"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016798","GO:0003824","GO:0016787"],"is_obsolete":false,"name":"glucosyl-N-acetylglucosamine glucosaminidase activity","termid":"GO:0052774"}


id: PBO:0085247
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Peptidylprolyl-cis/trans-isomerase (PPIase); specific for phosphorylated S/T residues N-terminal to proline; regulates phosphorylation of RNAPII large subunit (Rpo21p) C-terminal domain (CTD) at Ser7; associates with phospho-Ser5 form of RNAPII in vivo; present along entire coding length of genes; represses initiation of CUTs; required for efficient termination of mRNA transcription, trimethylation of histone H3; human ortholog PIN1 can complement yeast null and ts mutants","termid":"PBO:0085247"}


id: PBO:0052426
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"KISS1 receptor","termid":"PBO:0052426"}


id: PBO:0113154
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Histone methyltransferase with a role in transcriptional elongation; methylates H3 lysine 36 (H3K36), which suppresses incorporation of acetylated histones and signals for their deacetylation within transcribed genes; involved in transcription coupled-nucleotide excision repair; associates with C-terminal domain (CTD) of Rpo21p; H3K36me3 (trimethylation) requires Spt6p, proline 38 on H3, CTD of Rpo21p, Ctk1p, and C-terminal SRI domain of Ste2p; relocalizes to cytosol in response to hypoxia","termid":"PBO:0113154"}


id: PATO:0000115
data:
  {"annotation_feature_type":"gene","cv_name":"quality","gene_count":0,"genotype_count":0,"name":"OBSOLETE PATO:0000115 absolute temperature sensitivity (obsolete PATO:0000115)","termid":"PATO:0000115"}


id: PBO:0047963
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"fragile site, folic acid type, rare, fra(X)(q27.3) A","termid":"PBO:0047963"}


id: PBO:0001270
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PAK-related GC kinase Sid1","termid":"PBO:0001270"}


id: MONDO:0008907
data:
  {"annotated_genes":["SJAG_02783"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[86858],"is_not":false,"summary":null,"term":"MONDO:0008907"}]},"cv_name":"mondo","definition":"The most frequent form of congenital disorder of N-glycosylation and is characterized by cerebellar dysfunction, abnormal fat distribution, inverted nipples, strabismus and hypotonia. 3 forms of PMM2-CDG can be distinguished: the infantile multisystem type, late-infantile and childhood ataxia-intellectual disability type (3-10 yrs old), and the adult stable disability type. Infants usually develop ataxia, psychomotor delay and extraneurological manifestations including failure to thrive, enteropathy, hepatic dysfunction, coagulation abnormalities and cardiac and renal involvement. The phenotype is however highly variable and ranges from infants who die in the first year of life to mildly involved adults.","definition_xrefs":["Orphanet:79318"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"skin disorder","termid":"MONDO:0005093"},{"relation_name":"is_a","term_name":"congenital disorder of glycosylation type I","termid":"MONDO:0005500"},{"relation_name":"is_a","term_name":"disorder of protein N-glycosylation","termid":"MONDO:0017740"}],"gene_count":1,"genes_by_uniquename":{"SJAG_02783":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0024322"}],"interesting_parent_ids":["MONDO:0024322","MONDO:0005066"],"is_obsolete":false,"name":"PMM2-congenital disorder of glycosylation","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["MESH:C535739","OMIM:212065","GARD:9826","MEDGEN:138111","NCIT:C126868","UMLS:C0349653","DOID:0080552","NORD:1585","SCTID:459063003"],"synonyms":[{"name":"CDG 1A","type":"exact"},{"name":"CDG syndrome type Ia","type":"exact"},{"name":"CDG-IA","type":"exact"},{"name":"CDG1A","type":"exact"},{"name":"Jaeken syndrome","type":"related"},{"name":"PMM2-CDG","type":"exact"},{"name":"PMM2-CDG (CDG-Ia)","type":"related"},{"name":"PMM2-congenital disorder of glycosylation","type":"exact"},{"name":"carbohydrate deficient glycoprotein syndrome type Ia","type":"exact"},{"name":"carbohydrate-deficient glycoprotein syndrome type 1A","type":"related"},{"name":"carbohydrate-deficient glycoprotein syndrome type 1A (formerly)","type":"related"},{"name":"carbohydrate-deficient glycoprotein syndrome, type Ia","type":"related"},{"name":"carbohydrate-deficient glycoprotein syndrome, type Ia, formerly","type":"related"},{"name":"congenital disorder of glycosylation type 1a","type":"exact"},{"name":"congenital disorder of glycosylation type Ia","type":"exact"},{"name":"congenital disorder of glycosylation, type Ia","type":"related"},{"name":"phosphomannomutase 2 deficiency","type":"exact"}],"termid":"MONDO:0008907","terms_by_termid":{"MONDO:0008907":null},"xrefs":{"Monarch":{"xref_id":"0008907"}}}


id: PBO:0091712
data:
  {"annotation_feature_type":"gene","cv_name":"misc","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"facilitates Rad51 assembly at damage sites independently of Rad57","termid":"PBO:0091712"}


id: GO:1990235
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A protein complex which is capable of diamine N-acetyltransferase activity.","definition_xrefs":["PMID:8077207","GOC:bhm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acetyltransferase complex","termid":"GO:1902493"},{"relation_name":"part_of","term_name":"cytosol","termid":"GO:0005829"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005829"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005737"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0005575","GO:0005829","GO:0005737","GO:0032991"],"is_obsolete":false,"name":"diamine N-acetyltransferase complex","synonyms":[{"name":"SAT complex","type":"narrow"},{"name":"SAT tetramer","type":"narrow"},{"name":"spermidine acetyltransferase complex","type":"narrow"}],"termid":"GO:1990235"}


id: GO:0035572
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The dimethylation of the N-terminal serine of proteins to form the derivative N,N-dimethylserine.","definition_xrefs":["PMID:20668449"],"direct_ancestors":[{"relation_name":"is_a","term_name":"N-terminal peptidyl-serine methylation","termid":"GO:0035570"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"N-terminal peptidyl-serine dimethylation","termid":"GO:0035572"}


id: GO:0060009
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process whose specific outcome is the progression of a Sertoli cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a Sertoli cell fate.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"epithelial cell development","termid":"GO:0002064"},{"relation_name":"is_a","term_name":"developmental process involved in reproduction","termid":"GO:0003006"},{"relation_name":"part_of","term_name":"Sertoli cell differentiation","termid":"GO:0060008"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"Sertoli cell development","termid":"GO:0060009"}


id: FYPO:0004070
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA measured in a cell is too low to detect during a cellular response to copper ion starvation. Total RNA or a specific RNA may be affected.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"RNA absent from cell during vegetative growth","termid":"FYPO:0003161"},{"relation_name":"is_a","term_name":"decreased RNA level during cellular response to copper ion starvation during vegetative growth","termid":"FYPO:0003280"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"output_of","termid":"FYPO:0005447"},{"rel_name":"output_of","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"output_of","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000002","FYPO:0001320","FYPO:0006551","FYPO:0005447"],"is_obsolete":false,"name":"RNA absent from cell during cellular response to copper ion starvation","synonyms":[{"name":"RNA absent from cell during cellular response to copper ion starvation during mitotic cell cycle","type":"related"},{"name":"RNA absent from cell during cellular response to copper ion starvation during vegetative growth","type":"exact"},{"name":"RNA absent from cell during cellular response to copper starvation","type":"exact"},{"name":"transcripts absent from cell during cellular response to copper ion starvation","type":"exact"},{"name":"undetectable RNA level during cellular response to copper ion starvation","type":"exact"}],"termid":"FYPO:0004070"}


id: PBO:0005322
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"AGC family protein kinase Gad8","termid":"PBO:0005322"}


id: GO:0060587
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the rate, frequency or extent of lipoprotein lipid oxidation. Lipoprotein lipid oxidation is the modification of a lipoprotein by oxidation of the lipid group.","definition_xrefs":["GOC:dph","GOC:tb","GOC:BHF"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of lipid metabolic process","termid":"GO:0019216"},{"relation_name":"is_a","term_name":"regulation of lipoprotein oxidation","termid":"GO:0034442"},{"relation_name":"regulates","term_name":"lipoprotein lipid oxidation","termid":"GO:0034439"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0006629"],"is_obsolete":false,"name":"regulation of lipoprotein lipid oxidation","termid":"GO:0060587"}


id: SOFP:cyto_range
data:
  {"annotation_feature_type":"gene","cv_name":"feature_property","definition":"The cytological range covered by a feature. May be auto-generated from sequence coordinates, or determined by experimental methods","definition_xrefs":["so:cjm"],"direct_ancestors":[{"relation_name":"is_a","term_name":"feature_property","termid":"SOFP:feature_property"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyto_range","termid":"SOFP:cyto_range"}


id: FYECO:0000200
data:
  {"annotation_feature_type":"gene","cv_name":"fission_yeast_phenotype_condition","definition":"An experimental condition in which peptone was added to the medium or assay buffer in excess. Peptone is a mixture of nutrients generated by proteolytic digestion of animal protein with pepsin and serves as a nitrogen and amino acid source in some culture media. Peptone is not normally added to S. pombe growth media.","definition_xrefs":["PomBase:al"],"direct_ancestors":[{"relation_name":"is_a","term_name":"grouping excess","termid":"FYECO:0000109"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"+ peptone","termid":"FYECO:0000200"}


id: FYPO:0001061
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the import of glutamine into the cell is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal amino acid import during vegetative growth","termid":"FYPO:0001361"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0005447","FYPO:0000002","FYPO:0001320","FYPO:0001985"],"is_obsolete":false,"name":"abnormal glutamine import","synonyms":[{"name":"abnormal L-glutamine import","type":"narrow"},{"name":"abnormal L-glutamine import across plasma membrane","type":"exact"},{"name":"abnormal glutamine import during mitotic cell cycle","type":"related"},{"name":"abnormal glutamine import during vegetative growth","type":"exact"},{"name":"abnormal glutamine import into cell","type":"exact"},{"name":"abnormal glutamine uptake","type":"exact"}],"termid":"FYPO:0001061"}


id: PR:O94316
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A 116 kDa U5 small nuclear ribonucleoprotein component that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","PANTHER:PTHR23115:SF5","OMA:SCHPO03969"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pre-mRNA-splicing factor cwf10 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC215.12","secondary_identifiers":["UniProtKB:O94316"],"synonyms":[{"name":"114 kDa U5 small nuclear ribonucleoprotein component homolog (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-EFTUD2","type":"exact"},{"name":"complexed with cdc5 protein 10 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O94316"}


id: MONDO:0006255
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A malignant neoplasm arising from the large blood vessels. It is characterized by the presence of tumor cells that grow within the lumen of the blood vessels. The intraluminal tumor growth may result in vascular obstruction and spread of tumor emboli to peripheral organs. The prognosis is usually poor.","definition_xrefs":["NCIT:C53677"],"direct_ancestors":[{"relation_name":"is_a","term_name":"spindle cell sarcoma","termid":"MONDO:0002927"},{"relation_name":"is_a","term_name":"soft tissue sarcoma","termid":"MONDO:0018078"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"intimal sarcoma","secondary_identifiers":["EFO:1000305","MEDGEN:317791","UMLS:C1708550","ONCOTREE:INTS"],"synonyms":[{"name":"INTS","type":"related"}],"termid":"MONDO:0006255","xrefs":{"Monarch":{"xref_id":"0006255"}}}


id: GO:0039525
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"A process in which a symbiont alters or subverts the organization of chromatin in its host. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:sp","GOC:bf","PMID:16687403","PMID:11483770"],"direct_ancestors":[{"relation_name":"is_a","term_name":"symbiont-mediated perturbation of host cellular process","termid":"GO:0044068"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"symbiont-mediated perturbation of host chromatin organization","secondary_identifiers":["VZ:899"],"synonyms":[{"name":"modulation by virus of host chromatin organisation","type":"exact"},{"name":"modulation by virus of host chromatin organization","type":"narrow"},{"name":"modulation of host chromatin by virus","type":"exact"},{"name":"modulation of host chromatin structure by virus","type":"exact"},{"name":"regulation by virus of host chromatin organization","type":"related"}],"termid":"GO:0039525"}


id: PBO:0077272
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transmembrane protein 14A","termid":"PBO:0077272"}


id: FYPO:0005878
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"Auxotrophy in which a cell is unable to synthesize tryptophan, and therefore requires tryptophan in the medium for vegetative cell growth.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"auxotrophy","termid":"FYPO:0000128"},{"relation_name":"is_a","term_name":"abnormal cellular physical quality phenotype","termid":"FYPO:0004638"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000002","FYPO:0001985"],"is_obsolete":false,"name":"growth auxotrophic for tryptophan","synonyms":[{"name":"growth auxotrophic for tryptophan during mitotic cell cycle","type":"related"},{"name":"growth auxotrophic for tryptophan during vegetative growth","type":"exact"},{"name":"tryptophan auxotrophy","type":"exact"}],"termid":"FYPO:0005878"}


id: MONDO:0016356
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Diffuse cutaneous systemic sclerosis (dcSSc) is a subtype of Systemic Sclerosis (SSc) characterized by truncal and acral skin fibrosis with an early and significant incidence of diffuse involvement (interstitial lung disease, oliguric renal failure, diffuse gastrointestinal disease, and myocardial involvement).","definition_xrefs":["Orphanet:220393"],"direct_ancestors":[{"relation_name":"is_a","term_name":"systemic sclerosis","termid":"MONDO:0005100"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005093"},{"rel_name":"is_a","termid":"MONDO:0005046"}],"interesting_parent_ids":["MONDO:0005046","MONDO:0005093"],"is_obsolete":false,"name":"diffuse cutaneous systemic sclerosis","secondary_identifiers":["NCIT:C116791","GARD:9751","NANDO:1201010"],"synonyms":[{"name":"DcSSc","type":"related"},{"name":"dSSc","type":"exact"},{"name":"diffuse cutaneous systemic scleroderma","type":"exact"},{"name":"progressive cutaneous systemic scleroderma","type":"exact"},{"name":"progressive cutaneous systemic sclerosis","type":"exact"}],"termid":"MONDO:0016356","xrefs":{"Monarch":{"xref_id":"0016356"}}}


id: GO:0075077
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process in which the host organism stops, prevents, or reduces the frequency, rate or extent of the symbiont adenylate cyclase activity, which catalyze the reaction: ATP = 3',5'-cyclic AMP + diphosphate. The host is defined as the larger of the organisms involved in a symbiotic interaction.","definition_xrefs":["GOC:pamgo_curators"],"gene_count":0,"genotype_count":0,"name":"obsolete negative regulation by host of symbiont adenylate cyclase activity (obsolete GO:0075077)","termid":"GO:0075077"}


id: PBO:0086138
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein required for mismatch repair in mitosis and meiosis; forms a complex with Msh2p to repair both single-base & insertion-deletion mispairs; also involved in interstrand cross-link repair; potentially phosphorylated by Cdc28p; contains PIP motif that binds PCNA (Pol30p) and Rev1p","termid":"PBO:0086138"}


id: PBO:0031338
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_amiodarone","termid":"PBO:0031338"}


id: MONDO:0011812
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A syndrome of multiple congenital anomalies and is characterized by ocular manifestations (uni- or bilateral Duane anomaly (95% of cases), congenital optic nerve hypoplasia or optic disk coloboma), bilateral deafness and radial ray malformation that can include thenar hypoplasia and/or hypoplasia or aplasia of the thumbs; hypoplasia or aplasia of the radii; shortening and radial deviation of the forearms; triphalangeal thumbs; and duplication of the thumb (preaxial polydactyly).The phenotype overlaps with other SALL4>/i> related disorders including acro-renal-ocular syndrome and Holt-Oram syndrome (see these terms). Transmission is autosomal dominant.","definition_xrefs":["Orphanet:93293"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"obsolete neuro-ophthalmological disease (obsolete MONDO:0015368)","termid":"MONDO:0015368"},{"relation_name":"is_a","term_name":"autosomal dominant disease","termid":"MONDO:0000426"},{"relation_name":"is_a","term_name":"syndromic disease","termid":"MONDO:0002254"},{"relation_name":"is_a","term_name":"dysostosis","termid":"MONDO:0018234"},{"relation_name":"is_a","term_name":"congenital limb malformation","termid":"MONDO:0019054"},{"relation_name":"is_a","term_name":"non-syndromic limb reduction defect","termid":"MONDO:0019713"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"},{"rel_name":"is_a","termid":"MONDO:0000426"}],"interesting_parent_ids":["MONDO:0005497","MONDO:0000426"],"is_obsolete":false,"name":"Duane-radial ray syndrome","secondary_identifiers":["SCTID:720415006","MEDGEN:301647","DOID:0060747","OMIM:607323","ICD9:759.89","GARD:9182","SCTID:699867001","UMLS:C1623209","Orphanet:959"],"synonyms":[{"name":"DR syndrome","type":"exact"},{"name":"DRRS","type":"exact"},{"name":"Duane anomaly with radial abnormalities and deafness","type":"related"},{"name":"Duane anomaly with radial ray abnormalities and deafness","type":"exact"},{"name":"Duane-radial ray syndrome","type":"exact"},{"name":"Okihiro syndrome","type":"exact"},{"name":"acro-renal-ocular syndrome","type":"exact"},{"name":"acrorenocular syndrome","type":"exact"}],"termid":"MONDO:0011812","xrefs":{"Monarch":{"xref_id":"0011812"}}}


id: GO:0102705
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: H+ + L-serine = ethanolaminium(1+) + carbon dioxide.","definition_xrefs":["GOC:pz","PMID:11461929","RHEA:45824"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carboxy-lyase activity","termid":"GO:0016831"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016829","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"serine decarboxylase activity","secondary_identifiers":["MetaCyc:RXN-5641"],"termid":"GO:0102705"}


id: PBO:0062402
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily E member 25 pseudogene","termid":"PBO:0062402"}


id: GO:0000277
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: S-adenosyl-L-methionine + cytochrome c L-lysine = S-adenosyl-L-homocysteine + cytochrome c N6-methyl-L-lysine. This is the addition of a methyl group to the N6 atom of a lysine residue in cytochrome c.","definition_xrefs":["EC:2.1.1.59"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-lysine N-methyltransferase activity","termid":"GO:0016279"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008276"},{"rel_name":"is_a","termid":"GO:0140096"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0016741","GO:0003674","GO:0140096","GO:0016740","GO:0003824","GO:0008276"],"is_obsolete":false,"name":"[cytochrome c]-lysine N-methyltransferase activity","secondary_identifiers":["RHEA:24312","MetaCyc:2.1.1.59-RXN"],"synonyms":[{"name":"S-adenosyl-L-methionine:cytochrome c-L-lysine 6-N-methyltransferase activity","type":"related"},{"name":"S-adenosyl-L-methionine:cytochrome c-L-lysine N6-methyltransferase activity","type":"related"},{"name":"cytochrome c (lysine) methyltransferase activity","type":"related"},{"name":"cytochrome c methyltransferase activity","type":"related"},{"name":"cytochrome c-lysine N-methyltransferase activity","type":"related"},{"name":"cytochrome c-specific protein methylase III activity","type":"related"},{"name":"cytochrome c-specific protein-lysine methyltransferase activity","type":"related"}],"termid":"GO:0000277"}


id: GO:0045874
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that activates or increases the frequency, rate or extent of the sevenless signaling pathway.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"positive regulation of signal transduction","termid":"GO:0009967"},{"relation_name":"is_a","term_name":"regulation of sevenless signaling pathway","termid":"GO:0045501"},{"relation_name":"positively_regulates","term_name":"sevenless signaling pathway","termid":"GO:0045500"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0023052"},{"rel_name":"positively_regulates","termid":"GO:0023052"}],"interesting_parent_ids":["GO:0008150","GO:0023052"],"is_obsolete":false,"name":"positive regulation of sevenless signaling pathway","synonyms":[{"name":"activation of sevenless signaling pathway","type":"narrow"},{"name":"positive regulation of sev signaling pathway","type":"exact"},{"name":"positive regulation of sevenless signalling pathway","type":"exact"},{"name":"stimulation of sevenless signaling pathway","type":"narrow"},{"name":"up regulation of sevenless signaling pathway","type":"exact"},{"name":"up-regulation of sevenless signaling pathway","type":"exact"},{"name":"upregulation of sevenless signaling pathway","type":"exact"}],"termid":"GO:0045874"}


id: PBO:0082600
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Clathrin-coated vesicle component, regulator of endocytosis; copurifies with the DSC ubiquitin ligase complex; UBX (ubiquitin regulatory X) domain-containing protein that interacts with Cdc48p; required for efficient clathrin-mediated endocytosis; ortholog of fission yeast Ucp10","termid":"PBO:0082600"}


id: MONDO:0013835
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any muscular dystrophy-dystroglycanopathy, type A in which the cause of the disease is a mutation in the ISPD gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"muscular dystrophy-dystroglycanopathy, type A","termid":"MONDO:0000171"},{"relation_name":"is_a","term_name":"myopathy caused by variation in CRPPA","termid":"MONDO:0100530"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"},{"rel_name":"is_a","termid":"MONDO:0024322"},{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0005336","MONDO:0005066","MONDO:0024322","MONDO:0002320"],"is_obsolete":false,"name":"muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 7","secondary_identifiers":["DOID:0111234","OMIM:614643","GARD:15829","UMLS:C3553330","MEDGEN:766244"],"synonyms":[{"name":"ISPD muscular dystrophy-dystroglycanopathy, type A","type":"exact"},{"name":"MDDGA7","type":"related"},{"name":"Walker-Warburg syndrome or muscle-eye-brain disease, ISPD-related","type":"exact"},{"name":"muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 7","type":"exact"},{"name":"muscular dystrophy-dystroglycanopathy, type A caused by mutation in ISPD","type":"exact"}],"termid":"MONDO:0013835","xrefs":{"Monarch":{"xref_id":"0013835"}}}


id: GO:0003933
data:
  {"annotated_genes":["SJAG_00376","SJAG_03275","SJAG_04711"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[71639],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003934"},{"annotations":[58926,60598],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0003935"}]},"cv_name":"molecular_function","definition":"Catalysis of the hydrolysis of the imidazole ring of GTP, releasing formate. Two C-N bonds are hydrolyzed and the pentase unit is isomerized.","definition_xrefs":["GOC:curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cyclohydrolase activity","termid":"GO:0019238"}],"gene_count":3,"genes_by_uniquename":{"SJAG_00376":null,"SJAG_03275":null,"SJAG_04711":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016787"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016810"}],"interesting_parent_ids":["GO:0016787","GO:0016810","GO:0003824","GO:0003674"],"is_obsolete":false,"name":"GTP cyclohydrolase activity","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null},"termid":"GO:0003933","terms_by_termid":{"GO:0003934":null,"GO:0003935":null}}


id: MONDO:0006874
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A finding indicating increased bilirubin levels in the blood and urine, due to intrahepatic or extrahepatic obstruction of the biliary system.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cholestasis","termid":"MONDO:0001751"},{"relation_name":"is_a","term_name":"non-neoplastic bile duct disorder","termid":"MONDO:0006322"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0002515"},{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335","MONDO:0002515"],"is_obsolete":false,"name":"obstructive jaundice","secondary_identifiers":["DOID:13603","EFO:1001068","MESH:D041781","SCTID:44018007","MedDRA:10029982","UMLS:C0022354","MEDGEN:43988"],"synonyms":[{"name":"cholestatic jaundice","type":"exact"},{"name":"cholestatic jaundice syndrome","type":"exact"},{"name":"obstructive hyperbilirubinemia","type":"exact"}],"termid":"MONDO:0006874","xrefs":{"Monarch":{"xref_id":"0006874"}}}


id: GO:0015769
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The directed movement of melibiose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Melibiose is the disaccharide 6-O-alpha-D-galactopyranosyl-D-glucose.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disaccharide transport","termid":"GO:0015766"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"}],"interesting_parent_ids":["GO:0008150","GO:0006810","GO:0051179"],"is_obsolete":false,"name":"melibiose transport","termid":"GO:0015769"}


id: SO:0002151
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A uORF beginning with a codon other than AUG.","definition_xrefs":["PMID:26684391","PMID:27313038"],"direct_ancestors":[{"relation_name":"is_a","term_name":"uORF","termid":"SO:0002027"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"non_AUG_initiated_uORF","synonyms":[{"name":"non AUG initiated uORF","type":"exact"}],"termid":"SO:0002151"}


id: GO:0042978
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binds to and increases ornithine decarboxylase activity.","definition_xrefs":["GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"enzyme activator activity","termid":"GO:0008047"},{"relation_name":"is_a","term_name":"ornithine decarboxylase regulator activity","termid":"GO:0042979"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0098772"},{"rel_name":"is_a","termid":"GO:0030234"},{"rel_name":"is_a","termid":"GO:0140677"}],"interesting_parent_ids":["GO:0003674","GO:0098772","GO:0140677","GO:0030234"],"is_obsolete":false,"name":"ornithine decarboxylase activator activity","synonyms":[{"name":"L-ornithine carboxy-lyase activator activity","type":"narrow"}],"termid":"GO:0042978"}


id: MONDO:0800495
data:
  {"annotated_genes":["SJAG_04513"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87866],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0013526"}]},"cv_name":"mondo","definition":"An epilepsy syndrome characterized by seizures along with developmental and/or epileptic encephalopathy or progressive neurological deterioration where age at seizure onset varies.","direct_ancestors":[{"relation_name":"is_a","term_name":"variable age epilepsy syndrome","termid":"MONDO:0100619"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04513":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005027"}],"interesting_parent_ids":["MONDO:0005027"],"is_obsolete":false,"name":"variable-age epilepsy syndrome with developmental and/or epileptic encephalopathy or progressive neurological deterioration","references_by_uniquename":{"PB_REF:0000006":null},"synonyms":[{"name":"VAE-SDE/PND","type":"exact"}],"termid":"MONDO:0800495","terms_by_termid":{"MONDO:0013526":null},"xrefs":{"Monarch":{"xref_id":"0800495"}}}


id: PBO:0079502
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"thioredoxin like 4B","termid":"PBO:0079502"}


id: PBO:0017593
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Golgi phosphoprotein 3 family Vps74 (predicted)","termid":"PBO:0017593"}


id: PBO:0077059
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"THSD4 antisense RNA 2","termid":"PBO:0077059"}


id: PR:Q10432
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- ccq1 gene.","definition_xrefs":["PRO:DNx","UniProtKB:Q10432"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"coiled-coil quantitatively-enriched protein 1 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC188.07","synonyms":[{"name":"SMC protein ccq1 (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-ccq1","type":"exact"},{"name":"structural maintenance of chromosomes protein ccq1 (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:Q10432"}


id: MONDO:0005526
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A serious infectious disorder that follows wound contamination by the Gram-positive bacterium Clostridium tetani. The bacteria produce a neurotoxin called tetanospasmin, which causes muscle spasm in the jaw and other anatomic sites.","definition_xrefs":["NCIT:P378"],"direct_ancestors":[{"relation_name":"is_a","term_name":"primary bacterial infectious disease","termid":"MONDO:0000314"},{"relation_name":"is_a","term_name":"infectious disorder of the nervous system","termid":"MONDO:0020010"},{"relation_name":"is_a","term_name":"Clostridium infectious disease","termid":"MONDO:0024388"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetanus","secondary_identifiers":["EFO:0005593","SCTID:76902006","NCIT:C85185","MEDGEN:21489","MedDRA:10043376","ICD9:037","icd11.foundation:1793762788","MESH:D013742","Orphanet:3299","GARD:5144","SCTID:276202003","UMLS:C0039614","DOID:11338"],"synonyms":[{"name":"Clostridium tetani caused infectious disease of the nervous system","type":"exact"},{"name":"Clostridium tetani infectious disease of the nervous system","type":"exact"},{"name":"clostridial tetanus","type":"exact"},{"name":"infection due to Clostridium tetani","type":"exact"},{"name":"lockjaw","type":"related"}],"termid":"MONDO:0005526","xrefs":{"Monarch":{"xref_id":"0005526"}}}


id: GO:0140875
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways resulting in the formation of PR-toxin, a bicyclic sesquiterpene belonging to the eremophilane class and acting as a mycotoxin.","definition_xrefs":["PMID:27921136","PMID:24239699"],"direct_ancestors":[{"relation_name":"is_a","term_name":"sesquiterpenoid biosynthetic process","termid":"GO:0016106"},{"relation_name":"is_a","term_name":"mycotoxin biosynthetic process","termid":"GO:0043386"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0019748"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0006629","GO:0008150","GO:0019748"],"is_obsolete":false,"name":"PR-toxin biosynthetic process","synonyms":[{"name":"PR-toxin anabolism","type":"exact"},{"name":"PR-toxin biosynthesis","type":"exact"},{"name":"PR-toxin formation","type":"exact"},{"name":"PR-toxin synthesis","type":"exact"}],"termid":"GO:0140875"}


id: GO:1990595
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Combining with basic secretagogues to initiate pseudo-allergic reactions in mast cells.","definition_xrefs":["PMID:25517090","GOC:sp"],"direct_ancestors":[{"relation_name":"is_a","term_name":"G protein-coupled receptor activity","termid":"GO:0004930"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0038023"}],"interesting_parent_ids":["GO:0003674","GO:0038023"],"is_obsolete":false,"name":"mast cell secretagogue receptor activity","termid":"GO:1990595"}


id: GO:0016215
data:
  {"annotated_genes":["SJAG_03943"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[76986],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004768"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: acyl-CoA + reduced acceptor + O2 = desaturated-acyl-CoA + acceptor + 2 H2O.","definition_xrefs":["PMID:36017969"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water","termid":"GO:0016717"}],"gene_count":1,"genes_by_uniquename":{"SJAG_03943":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016491"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"acyl-CoA desaturase activity","references_by_uniquename":{"GO_REF:0000033":null},"synonyms":[{"name":"CoA desaturase activity","type":"broad"}],"termid":"GO:0016215","terms_by_termid":{"GO:0004768":null}}


id: GO:0009977
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of proteins from one side of a membrane to the other. Transportation is dependent on pH gradient across the membrane.","definition_xrefs":["PMID:25494301","PMID:11526245"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein transmembrane transporter activity","termid":"GO:0008320"},{"relation_name":"is_a","term_name":"secondary active transmembrane transporter activity","termid":"GO:0015291"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0140318"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0140318","GO:0003674"],"is_obsolete":false,"name":"proton motive force dependent protein transmembrane transporter activity","secondary_identifiers":["GO:0015557"],"synonyms":[{"name":"arginine targeting transmembrane transporter activity","type":"exact"},{"name":"delta-pH-dependent protein transporter activity","type":"exact"},{"name":"pH-dependent protein transporter activity","type":"exact"},{"name":"twin-arginine targeting transmembrane transporter activity","type":"exact"}],"termid":"GO:0009977"}


id: PBO:0065220
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"proline rich 3","termid":"PBO:0065220"}


id: PBO:0082719
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Component of the Paf1p complex; binds to and modulates the activity of RNA polymerases I and II; required for expression of certain genes, modification of some histones, and telomere maintenance; involved in transcription elongation as demonstrated by the G-less-based run-on (GLRO) assay; protein abundance increases in response to DNA replication stress; human homolog, parafibromin, is a tumour suppressor linked to breast, renal and gastric cancers","termid":"PBO:0082719"}


id: PATO:0001382
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A polyploidy quality inhering in a bearer by virtue of the bearer's containing four homologous sets of chromosomes.","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/Tetraploid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"polyploid","termid":"PATO:0001377"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tetraploid","termid":"PATO:0001382"}


id: PBO:0016123
data:
  {"annotation_feature_type":"gene","cv_name":"warning","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"this gene is located in the silent mating type region, it is only transcribed when at the mat1 locus, see mat1-Mi","termid":"PBO:0016123"}


id: SO:0000738
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"DNA belonging to the nuclear genome of cell.","direct_ancestors":[{"relation_name":"is_a","term_name":"sequence_location","termid":"SO:0000735"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"nuclear_sequence","synonyms":[{"name":"nuclear sequence","type":"exact"}],"termid":"SO:0000738"}


id: PBO:0029580
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_cell_population_growth_at_low_temperature","termid":"PBO:0029580"}


id: PBO:0004168
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"paxillin-like protein Pxl1","termid":"PBO:0004168"}


id: GO:0065008
data:
  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id: FYPO:0007822
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id: GO:0008974
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id: PBO:0012859
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id: PBO:0090974
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id: GO:0046938
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id: MONDO:0005013
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id: PBO:0001100
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  {"annotation_feature_type":"gene","cv_name":"PomBase family or domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"jmjC domain","termid":"PBO:0001100"}


id: PBO:0085392
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id: PBO:0075138
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SNRPA1 divergent transcript","termid":"PBO:0075138"}


id: PBO:0069239
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, U6 small nuclear 494, pseudogene","termid":"PBO:0069239"}


id: MONDO:1012976
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  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Hyperkeratosis that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"disorder of development or morphogenesis, non-human animal","termid":"MONDO:1011313"},{"relation_name":"is_a","term_name":"integumentary system disorder, non-human animal","termid":"MONDO:1011328"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hyperkeratosis, non-human animal","termid":"MONDO:1012976","xrefs":{"Monarch":{"xref_id":"1012976"}}}


id: MONDO:0017513
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id: GO:0071847
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id: PBO:0044754
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DDX39B antisense RNA 1","termid":"PBO:0044754"}


id: PBO:0067675
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 860, pseudogene","termid":"PBO:0067675"}


id: PBO:0062432
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  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 7 subfamily E member 94 pseudogene","termid":"PBO:0062432"}


id: GO:1903937
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id: PR:O94303
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- his4 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94303"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"imidazole glycerol phosphate synthase hisHF (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC418.01c","synonyms":[{"name":"IGP synthase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"IGPS (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"ImGP synthase (Schizosaccharomyces pombe 972h-)","type":"exact"},{"name":"Spom972h-his4","type":"exact"}],"termid":"PR:O94303"}


id: GO:0010690
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that decreases the frequency, rate or extent of the synthesis of RNA from ribosomal protein genes by RNA polymerase II, originating at an RNA polymerase II promoter, as a result of a disturbance in organismal or cellular homeostasis.","definition_xrefs":["GOC:txnOH","GOC:dph","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"negative regulation of ribosomal protein gene transcription by RNA polymerase II","termid":"GO:0010688"},{"relation_name":"is_a","term_name":"cellular response to stress","termid":"GO:0033554"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0006355"},{"rel_name":"negatively_regulates","termid":"GO:0006351"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0010467"}],"interesting_parent_ids":["GO:0008150","GO:0006351","GO:0006355","GO:0010467"],"is_obsolete":false,"name":"negative regulation of ribosomal protein gene transcription from RNA polymerase II promoter in response to stress","termid":"GO:0010690"}


id: GO:0090545
data:
  {"annotated_genes":["SJAG_03982","SJAG_03844","SJAG_02778","SJAG_00934"],"annotation_feature_type":"gene","cv_annotations":{"cellular_component":[{"annotations":[115279,110116,114088,73430],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070824"}]},"cv_name":"cellular_component","definition":"A SWI/SNF-type complex that contains a subunit from the CHD(Chromodomain helicase DNA-binding) family. The CHD family is characterized by two signature sequence motifs: tandem chromodomains located in the N-terminal region, and the SNF2-like ATPase domain located in the central region of the protein structure.","definition_xrefs":["PMID:17350655","GOC:tb","GOC:krc"],"direct_ancestors":[{"relation_name":"is_a","term_name":"SWI/SNF superfamily-type complex","termid":"GO:0070603"}],"gene_count":4,"genes_by_uniquename":{"SJAG_00934":null,"SJAG_02778":null,"SJAG_03844":null,"SJAG_03982":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"part_of","termid":"GO:0005694"},{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"part_of","termid":"GO:0005634"}],"interesting_parent_ids":["GO:0005634","GO:0032991","GO:0005575","GO:0005694"],"is_obsolete":false,"name":"CHD-type complex","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"termid":"GO:0090545","terms_by_termid":{"GO:0070824":null}}


id: MONDO:0958176
data:
  {"annotated_genes":["SJAG_04601"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87457],"is_not":false,"summary":null,"term":"MONDO:0958176"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"oculopharyngeal muscular dystrophy","termid":"MONDO:0008116"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04601":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005336"}],"interesting_parent_ids":["MONDO:0005336"],"is_obsolete":false,"name":"oculopharyngeal muscular dystrophy 1","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["OMIM:164300","NCIT:C84942"],"termid":"MONDO:0958176","terms_by_termid":{"MONDO:0958176":null},"xrefs":{"Monarch":{"xref_id":"0958176"}}}


id: GO:0048016
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A intracellular signal transduction in which the signal is transmitted within the cell via an inositol phosphate. Includes production of the inositol phosphate, and downstream effectors that further transmit the signal within the cell. Inositol phosphates are a group of mono- to poly-phosphorylated inositols, and include inositol monophosphate (IP), inositol trisphosphate (IP3), inositol pentakisphosphate (IP5) and inositol hexaphosphate (IP6).","definition_xrefs":["ISBN:0198506732","GOC:bf","GOC:ceb","GOC:signaling","PMID:11331907"],"gene_count":0,"genotype_count":0,"name":"obsolete inositol phosphate-mediated signaling (obsolete GO:0048016)","synonyms":[{"name":"inositol phosphate-mediated signalling","type":"exact"}],"termid":"GO:0048016"}


id: MONDO:0033311
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"Joubert syndrome","termid":"MONDO:0018772"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Joubert syndrome 33","secondary_identifiers":["MEDGEN:1615779","OMIM:617767","DOID:0080279","UMLS:C4540389"],"synonyms":[{"name":"JBTS33","type":"related"},{"name":"Joubert syndrome 33","type":"exact"}],"termid":"MONDO:0033311","xrefs":{"Monarch":{"xref_id":"0033311"}}}


id: GO:0031342
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that stops, prevents, or reduces the frequency, rate or extent of cell killing.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of cell killing","termid":"GO:0031341"},{"relation_name":"is_a","term_name":"negative regulation of cellular process","termid":"GO:0048523"},{"relation_name":"negatively_regulates","term_name":"cell killing","termid":"GO:0001906"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"negative regulation of cell killing","secondary_identifiers":["Reactome:R-HSA-9664433"],"synonyms":[{"name":"down regulation of cell killing","type":"exact"},{"name":"down-regulation of cell killing","type":"exact"},{"name":"downregulation of cell killing","type":"exact"},{"name":"inhibition of cell killing","type":"narrow"}],"termid":"GO:0031342"}


id: PBO:0080191
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vascular endothelial growth factor D","termid":"PBO:0080191"}


id: MOD:01948
data:
  {"annotation_feature_type":"gene","cv_name":"PSI-MOD","definition":"A protein modification that effectively cross-links an L-cysteine residue and two L-serine residues by a thioether bond and a carbon-carbon bond to form labionin.","definition_xrefs":["RESID:AA0594","PubMed:20082397"],"direct_ancestors":[{"relation_name":"is_a","term_name":"beta-carbon thioether crosslinked residues","termid":"MOD:01993"},{"relation_name":"is_a","term_name":"crosslinked L-serine residue","termid":"MOD:02055"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MOD:00905"}],"interesting_parent_ids":["MOD:00905"],"is_obsolete":false,"name":"labionin","synonyms":[{"name":"(2S,4S)-2,4-diamino-2-[([(2R)-2-amino-2-carboxyethyl]sulfanyl)methyl]pentanedioic acid","type":"exact"},{"name":"(2S,4S,8R)-2,4,8-triamino-4-carboxy-6-thianonanedioic acid","type":"exact"},{"name":"(2S,4S,8R)-labionin","type":"exact"},{"name":"labionin","type":"exact"}],"termid":"MOD:01948"}


id: PBO:0005131
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"gamma tubulin complex subunit Alp16","termid":"PBO:0005131"}


id: PBO:0075374
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"SRY-box transcription factor 11","termid":"PBO:0075374"}


id: PR:O94349
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- SPCC61.05 gene.","definition_xrefs":["PRO:DNx","UniProtKB:O94349"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"uncharacterized membrane protein C61.05 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC61.05","synonyms":[{"name":"Spom972h-SPCC61.05","type":"exact"}],"termid":"PR:O94349"}


id: PR:O94580
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- udp7 gene.","definition_xrefs":["UniProtKB:O94580","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin and WLM domain-containing metalloprotease SPCC1442.07c (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPCC1442.07c","synonyms":[{"name":"Spom972h-udp7","type":"exact"}],"termid":"PR:O94580"}


id: MONDO:0006364
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A localized or multifocal mesothelioma arising from the peritoneum. It predominantly occurs in women. It is characterized by the formation of papillae, covered by a single layer of blunt mesothelial cells. Mitotic figures are not present. There is no evidence of severe cytologic atypia. It has a relatively favorable clinical outcome, compared to diffuse malignant mesothelioma.","definition_xrefs":["NCIT:C45661"],"direct_ancestors":[{"relation_name":"is_a","term_name":"well differentiated papillary mesothelioma","termid":"MONDO:0003688"},{"relation_name":"is_a","term_name":"peritoneal mesothelioma","termid":"MONDO:0006362"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"peritoneal well differentiated papillary mesothelioma","secondary_identifiers":["MEDGEN:318015","EFO:1000469","UMLS:C1709507"],"synonyms":[{"name":"peritoneal WDPM","type":"exact"},{"name":"peritoneal well differentiated papillary mesothelioma","type":"exact"}],"termid":"MONDO:0006364","xrefs":{"Monarch":{"xref_id":"0006364"}}}


id: PBO:0111932
data:
  {"annotation_feature_type":"gene","cv_name":"pombase_family_or_domain","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HIT family","termid":"PBO:0111932"}


id: FYPO:0002129
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which the phosphorylation of one or more specific proteins, or of specific protein sites, occurs to a greater extent than normal during a cellular response to heat.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased protein phosphorylation during vegetative growth","termid":"FYPO:0001038"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0002274"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0002494"}],"interesting_parent_ids":["FYPO:0001320","FYPO:0001985","FYPO:0002494","FYPO:0005447","FYPO:0000002","FYPO:0002274"],"is_obsolete":false,"name":"increased protein phosphorylation during cellular response to heat","synonyms":[{"name":"increased protein phosphorylation during cellular response to heat during mitotic cell cycle","type":"related"},{"name":"increased protein phosphorylation during cellular response to heat during vegetative growth","type":"exact"},{"name":"increased protein phosphorylation during cellular response to heat shock","type":"narrow"}],"termid":"FYPO:0002129"}


id: PBO:0084584
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Merged open reading frame; does not encode a discrete protein; YCR055C was originally annotated as an independent ORF, but as a result of sequence changes, it was merged with two other ORFs into a single reading frame, designated YCR057C","termid":"PBO:0084584"}


id: PATO:0001870
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A shape quality inhering in a circular disk by virtue of the bearer's having a segment of another circle removed from its edge, so that what remains is a shape enclosed by two circular arcs of different diameters which intersect at two points (usually in such a manner that the enclosed shape does not include the center of the original circle).","definition_xrefs":["Wikipedia:http://en.wikipedia.org/wiki/Crescent"],"direct_ancestors":[{"relation_name":"is_a","term_name":"2-D shape","termid":"PATO:0002006"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"crescent-shaped","secondary_identifiers":["Image:http\\://upload.wikimedia.org/wikipedia/commons/7/74/Crescent.svg"],"synonyms":[{"name":"bow-shaped","type":"related"},{"name":"crescentic","type":"exact"},{"name":"lunate","type":"related"}],"termid":"PATO:0001870"}


id: PBO:0062980
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"PABPN1 pseudogene 2","termid":"PBO:0062980"}


id: PBO:0067554
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNA, 7SL, cytoplasmic 705, pseudogene","termid":"PBO:0067554"}


id: PBO:0046764
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"exosome component 4","termid":"PBO:0046764"}


id: MONDO:0024313
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An infection caused by Staphylococcus.","definition_xrefs":["NCIT:C35038"],"direct_ancestors":[{"relation_name":"is_a","term_name":"bacterial infectious disease","termid":"MONDO:0005113"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"staphylococcal infection","secondary_identifiers":["EFO:1001849","MEDGEN:52483","SCTID:56038003","MESH:D013203","UMLS:C0038160"],"synonyms":[{"name":"staphylococcal infection","type":"exact"}],"termid":"MONDO:0024313","xrefs":{"Monarch":{"xref_id":"0024313"}}}


id: PBO:0082344
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ATP-dependent DNA translocase involved in chromatin remodeling; ATPase component that, with Itc1p, forms a complex required for repression of a-specific genes, INO1, and early meiotic genes during mitotic growth; exhibits basal levels of chromatin binding throughout the genome as well as interacts with sequence-specific factors to accurately position nucleosomes in chromatin; targeted by Ume6p- and Sua7p-dependent DNA looping to many loci genome-wide","termid":"PBO:0082344"}


id: PBO:0052004
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"joining chain of multimeric IgA and IgM","termid":"PBO:0052004"}


id: MONDO:0011446
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myoclonic epilepsy, congenital deafness, macular dystrophy, and psychiatric disorders","secondary_identifiers":["UMLS:C1858478","MESH:C565786","OMIM:604363","MEDGEN:388072"],"synonyms":[{"name":"myoclonic epilepsy, congenital deafness, macular dystrophy, and psychiatric disorders","type":"exact"}],"termid":"MONDO:0011446","xrefs":{"Monarch":{"xref_id":"0011446"}}}


id: MONDO:0012158
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"keratoconus","termid":"MONDO:0015486"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"keratoconus 2","secondary_identifiers":["MEDGEN:332363","MESH:C563827","OMIM:608932","UMLS:C1837090"],"synonyms":[{"name":"KTCN2","type":"exact"},{"name":"keratoconus 2","type":"exact"}],"termid":"MONDO:0012158","xrefs":{"Monarch":{"xref_id":"0012158"}}}


id: GO:0048451
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process that gives rise to the petal. This process pertains to the initial formation of a structure from unspecified parts.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"floral organ formation","termid":"GO:0048449"},{"relation_name":"part_of","term_name":"petal morphogenesis","termid":"GO:0048446"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"petal formation","secondary_identifiers":["GO:0048419"],"termid":"GO:0048451"}


id: PBO:0017665
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial ribosomal protein subunit MrpS12 (predicted)","termid":"PBO:0017665"}


id: GO:0103001
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reactions: dimethyl sulfoxide + H+ + NADH + O2 = dimethyl sulfone + H2O + NAD+ and dimethyl sulfide + H+ + NADH + O2 = dimethyl sulfoxide + H2O + NAD+.","definition_xrefs":["PMID:9345770","EC:1.14.13.245"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen","termid":"GO:0016709"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003824","GO:0016491","GO:0003674"],"is_obsolete":false,"name":"dimethylsulfoxide oxygenase activity","synonyms":[{"name":"assimilatory dimethylsulfide S-monooxygenase activity","type":"exact"}],"termid":"GO:0103001"}


id: PBO:0070307
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"RNY1 pseudogene 13","termid":"PBO:0070307"}


id: GO:0060600
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which an epithelial cord, rod or tube bifurcates at its end.","definition_xrefs":["GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"morphogenesis of an epithelium","termid":"GO:0002009"},{"relation_name":"part_of","term_name":"morphogenesis of a branching epithelium","termid":"GO:0061138"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dichotomous subdivision of an epithelial terminal unit","synonyms":[{"name":"primary branching of an epithelium","type":"related"}],"termid":"GO:0060600"}


id: PBO:0031209
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-premature_activation_of_bipolar_cell_growth","termid":"PBO:0031209"}


id: GO:0043217
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process of preserving the structure and function of mature myelin. This includes maintaining the compact structure of myelin necessary for its electrical insulating characteristics as well as the structure of non-compact regions such as Schmidt-Lantermann clefts and paranodal loops. This does not include processes responsible for maintaining the nodes of Ranvier, which are not part of the myelin sheath.","definition_xrefs":["GOC:dgh"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plasma membrane organization","termid":"GO:0007009"},{"relation_name":"part_of","term_name":"myelination","termid":"GO:0042552"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0061024"},{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150","GO:0061024"],"is_obsolete":false,"name":"myelin maintenance","synonyms":[{"name":"myelin sheath maintenance","type":"exact"}],"termid":"GO:0043217"}


id: MONDO:0005844
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An eyelid cyst caused by the blockage of a meibomian gland.","definition_xrefs":["NCIT:C26717"],"direct_ancestors":[{"relation_name":"is_a","term_name":"internal hordeolum","termid":"MONDO:0004917"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"},{"rel_name":"is_a","termid":"MONDO:0005093"}],"interesting_parent_ids":["MONDO:0005093","MONDO:0005328"],"is_obsolete":false,"name":"chalazion","secondary_identifiers":["DOID:9903","ICD10CM:H00.1","MEDGEN:869","EFO:0007363","SCTID:1482004","UMLS:C0007933","icd11.foundation:777918741","MESH:D017043","ICD9:373.2"],"synonyms":[{"name":"Meibomian cyst","type":"related"},{"name":"chalazia","type":"related"},{"name":"chalazion","type":"exact"},{"name":"cyst, Meibomian","type":"related"},{"name":"meibomian gland lipogranuloma","type":"exact"}],"termid":"MONDO:0005844","xrefs":{"Monarch":{"xref_id":"0005844"}}}


id: PBO:0109626
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"HTLV-1 related endogenous sequence (pseudogene)","termid":"PBO:0109626"}


id: PATO:0005024
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"An orientation quality inhering in a bearer by virtue of the bearer having a position that is directed along the longitudinal or anterior-posterior axis.","definition_xrefs":["PATOC:WD"],"direct_ancestors":[{"relation_name":"is_a","term_name":"orientation","termid":"PATO:0000133"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"longitudinal orientation","termid":"PATO:0005024"}


id: MONDO:1012174
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"myasthenia, non-human animal","termid":"MONDO:1011849"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"myasthenia, Amur tiger","secondary_identifiers":["OMIA:000684-74533"],"termid":"MONDO:1012174","xrefs":{"Monarch":{"xref_id":"1012174"}}}


id: FYPO:0006151
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of SUMO-specific protease activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal peptidase activity","termid":"FYPO:0000666"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000652"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"}],"interesting_parent_ids":["FYPO:0000652","FYPO:0001985","FYPO:0000707","FYPO:0000661","FYPO:0000654"],"is_obsolete":false,"name":"abnormal SUMO-specific protease activity","termid":"FYPO:0006151"}


id: MONDO:0054763
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"neurodegeneration with brain iron accumulation","termid":"MONDO:0018307"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0002039"}],"interesting_parent_ids":["MONDO:0002039","MONDO:0005066","MONDO:0005559"],"is_obsolete":false,"name":"neurodegeneration with brain iron accumulation 7","secondary_identifiers":["MEDGEN:1647672","UMLS:C4693583","OMIM:617916"],"synonyms":[{"name":"NBIA7","type":"related"},{"name":"neurodegeneration with brain iron accumulation 7","type":"exact"}],"termid":"MONDO:0054763","xrefs":{"Monarch":{"xref_id":"0054763"}}}


id: PBO:0080304
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"vomeronasal 1 receptor 68 pseudogene","termid":"PBO:0080304"}


id: GO:0009020
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: S-adenosyl-L-methionine + tRNA = S-adenosyl-L-homocysteine + tRNA containing 2'-O-methylguanosine.","definition_xrefs":["EC:2.1.1.34","RHEA:20077"],"gene_count":0,"genotype_count":0,"name":"obsolete tRNA (guanosine-2'-O-)-methyltransferase activity (obsolete GO:0009020)","termid":"GO:0009020"}


id: FYPO:0009047
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"An increased chemical resistance phenotype observed in the vegetative growth phase of the life cycle in which cells grow in the presence of a higher concentration of dimethyl sulfoxide than normal.","definition_xrefs":["PomBase:mlr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased resistance to chemical during vegetative growth","termid":"FYPO:0000126"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0002682"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000139","FYPO:0002682","FYPO:0000003"],"is_obsolete":false,"name":"resistance to dimethyl sulfoxide","synonyms":[{"name":"resistance to dimethyl sulfoxide during mitotic cell cycle","type":"related"},{"name":"resistance to dimethyl sulfoxide during vegetative growth","type":"exact"},{"name":"resistant to dimethyl sulfoxide","type":"exact"}],"termid":"FYPO:0009047"}


id: GO:0015592
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of methylgalactoside from one side of a membrane to the other. Methylgalactoside is a compound in which the H of the OH group on carbon-1 of galactose is replaced by a methyl group.","definition_xrefs":["GOC:mtg_transport","ISBN:0815340729"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbohydrate derivative transmembrane transporter activity","termid":"GO:1901505"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0022857"}],"interesting_parent_ids":["GO:0003674","GO:0005215","GO:0022857"],"is_obsolete":false,"name":"methylgalactoside transmembrane transporter activity","synonyms":[{"name":"galactose/glucose (methylgalactoside) porter activity","type":"related"}],"termid":"GO:0015592"}


id: GO:0044644
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. A process that begins with venom being forced into an organism by the bite or sting of another organism, and ends with the resultant negative regulation of complement activation via the alternative pathway in the bitten/stung organism.","definition_xrefs":["PMID:20837040","GOC:jl","GOC:fj"],"gene_count":0,"genotype_count":0,"name":"obsolete envenomation resulting in negative regulation of complement activation, alternative pathway in another organism (obsolete GO:0044644)","synonyms":[{"name":"envenomation resulting in negative regulation of complement activation, alternative pathway in other organism","type":"exact"}],"termid":"GO:0044644"}


id: PR:Q09715
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein that is a translation product of the Schizosaccharomyces pombe 972h- tup11 gene.","definition_xrefs":["UniProtKB:Q09715","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"transcriptional repressor tup11 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPAC18B11.10","synonyms":[{"name":"Spom972h-tup11","type":"exact"}],"termid":"PR:Q09715"}


id: PBO:0003350
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"palmitoyl protein thioesterase-dolichol pyrophosphate phosphatase fusion 1","termid":"PBO:0003350"}


id: GO:0000749
data:
  {"annotated_genes":["SJAG_00993","SJAG_03340","SJAG_01978","SJAG_02923","SJAG_01345","SJAG_03209","SJAG_00990","SJAG_01718"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[107462],"is_not":false,"summary":null,"term":"GO:0000749"},{"annotations":[65813,98937,108225,91076,98268,95185],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0071507"},{"annotations":[72468],"is_not":false,"rel_names":["part_of"],"summary":null,"term":"GO:0000750"}]},"cv_name":"biological_process","definition":"Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pheromone stimulus that positively regulates the process of conjugation with cellular fusion. An example of this process is found in Saccharomyces cerevisiae.","definition_xrefs":["GOC:clt"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response to pheromone","termid":"GO:0071444"},{"relation_name":"positively_regulates","term_name":"conjugation with cellular fusion","termid":"GO:0000747"}],"gene_count":8,"genes_by_uniquename":{"SJAG_00990":null,"SJAG_00993":null,"SJAG_01345":null,"SJAG_01718":null,"SJAG_01978":null,"SJAG_02923":null,"SJAG_03209":null,"SJAG_03340":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"positively_regulates","termid":"GO:0000747"},{"rel_name":"regulates","termid":"GO:0000747"}],"interesting_parent_ids":["GO:0000747","GO:0008150"],"is_obsolete":false,"name":"response to pheromone triggering conjugation with cellular fusion","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null,"GO_REF:0000117":null},"secondary_identifiers":["GO:0030434","GO:0007328"],"synonyms":[{"name":"response to pheromone during conjugation with cellular fusion","type":"related"}],"termid":"GO:0000749","terms_by_termid":{"GO:0000749":null,"GO:0000750":null,"GO:0071507":null}}


id: GO:1904593
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Binding to prostaglandin.","definition_xrefs":["PMID:21445266","GOC:TermGenie","GO_REF:0000067"],"direct_ancestors":[{"relation_name":"is_a","term_name":"fatty acid derivative binding","termid":"GO:1901567"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005488"},{"rel_name":"is_a","termid":"GO:0008289"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0008289","GO:0005488","GO:0003674"],"is_obsolete":false,"name":"prostaglandin binding","termid":"GO:1904593"}


id: PBO:0080528
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"WASH complex subunit 1","termid":"PBO:0080528"}


id: PBO:0055471
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"long intergenic non-protein coding RNA 2904","termid":"PBO:0055471"}


id: GO:0033053
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving D-glutamine, the D-enantiomer of the amino acid glutamine, i.e. (2R)-2,5-diamino-5-oxopentanoic acid.","definition_xrefs":["GOC:jsg","GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glutamine metabolic process","termid":"GO:0006541"},{"relation_name":"is_a","term_name":"D-amino acid metabolic process","termid":"GO:0046416"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006520"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006520"],"is_obsolete":false,"name":"D-glutamine metabolic process","synonyms":[{"name":"D-glutamine metabolism","type":"exact"}],"termid":"GO:0033053"}


id: PR:O60072
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"An activating signal cointegrator 1 complex subunit 3 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PRO:DNx","OMA:SCHPO03837","PANTHER:PTHR11752:SF8"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"helicase mug81 (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC13G1.10c","secondary_identifiers":["UniProtKB:O60072"],"synonyms":[{"name":"Spom972h-ASCC3","type":"exact"},{"name":"meiotically up-regulated gene 81 protein (Schizosaccharomyces pombe 972h-)","type":"exact"}],"termid":"PR:O60072"}


id: PBO:0031503
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-sensitive_to_actinomycin_D","termid":"PBO:0031503"}


id: PATO:0001317
data:
  {"annotation_feature_type":"gene","cv_name":"quality","definition":"A temperature which is increased by a high degree.","definition_xrefs":["PATOC:GVG"],"direct_ancestors":[{"relation_name":"is_a","term_name":"increased temperature","termid":"PATO:0001305"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"severe increased temperature","termid":"PATO:0001317"}


id: MONDO:0020701
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"brachydactyly","termid":"MONDO:0021004"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"brachydactyly type A1A","synonyms":[{"name":"BDA1","type":"related"},{"name":"BRACHYDACTYLY, type A1","type":"related"},{"name":"Farabee-type Brachydactyly","type":"related"}],"termid":"MONDO:0020701","xrefs":{"Monarch":{"xref_id":"0020701"}}}


id: GO:0033854
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-oxoglutarate + L-arogenate = L-glutamate + prephenate.","definition_xrefs":["RHEA:22880","EC:2.6.1.79"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transaminase activity","termid":"GO:0008483"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016769"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016769","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"glutamate-prephenate aminotransferase activity","secondary_identifiers":["KEGG_REACTION:R07276","MetaCyc:PREPHENATE-TRANSAMINE-RXN"],"synonyms":[{"name":"L-arogenate:2-oxoglutarate aminotransferase activity","type":"related"},{"name":"L-glutamate:prephenate aminotransferase activity","type":"related"},{"name":"PAT","type":"related"},{"name":"prephenate transaminase activity","type":"broad"}],"termid":"GO:0033854"}


id: MONDO:0011618
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"hereditary disease","termid":"MONDO:0003847"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"liver fibrocystic disease and polydactyly","secondary_identifiers":["MEDGEN:381278","MESH:C565272","UMLS:C1853827","OMIM:605944"],"synonyms":[{"name":"liver fibrocystic disease and polydactyly","type":"exact"}],"termid":"MONDO:0011618","xrefs":{"Monarch":{"xref_id":"0011618"}}}


id: PBO:0044847
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"defensin beta 131B","termid":"PBO:0044847"}


id: MONDO:0005484
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An adenoma that arises from the colon or rectum. The group of colorectal adenomas includes tubular, villous, and tubulovillous adenomas, traditional serrated adenomas, sessile serrated adenomas/polyps, and familial adenomatous polyposis.","definition_xrefs":["NCIT:C5673"],"direct_ancestors":[{"relation_name":"is_a","term_name":"colorectal neoplasm","termid":"MONDO:0005335"},{"relation_name":"is_a","term_name":"digestive system adenoma","termid":"MONDO:0006180"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"colorectal adenoma","secondary_identifiers":["UMLS:C1302401","MEDGEN:224904","SCTID:399432003","EFO:0005406","DOID:0050860","DOID:0050914"],"synonyms":[{"name":"adenoma of large bowel","type":"exact"},{"name":"adenoma of large intestine","type":"exact"},{"name":"adenoma of the large bowel","type":"exact"},{"name":"adenoma of the large intestine","type":"exact"},{"name":"colorectal adenoma","type":"exact"},{"name":"colorectum adenoma","type":"exact"},{"name":"large bowel adenoma","type":"exact"},{"name":"large intestine adenoma","type":"exact"}],"termid":"MONDO:0005484","xrefs":{"Monarch":{"xref_id":"0005484"}}}


id: MONDO:0800406
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"An inherited retinopathy caused by bi-allelic variants in the ABCA4 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"inherited retinal dystrophy","termid":"MONDO:0019118"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005328"}],"interesting_parent_ids":["MONDO:0005328"],"is_obsolete":false,"name":"ABCA4-related retinopathy","termid":"MONDO:0800406","xrefs":{"Monarch":{"xref_id":"0800406"}}}


id: PBO:0042185
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cyclin B2 pseudogene 1","termid":"PBO:0042185"}


id: PR:P87145
data:
  {"annotation_feature_type":"gene","cv_name":"protein","definition":"A protein VAC14 that is encoded in the genome of Schizosaccharomyces pombe 972h-.","definition_xrefs":["PANTHER:PTHR16023:SF0","OMA:SCHPO03640","PRO:DNx"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Schizosaccharomyces pombe 972h- protein","termid":"PR:000029043"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"protein VAC14 homolog (Schizosaccharomyces pombe 972h-)","pombase_gene_id":"SPBC25H2.03","secondary_identifiers":["UniProtKB:P87145"],"synonyms":[{"name":"Spom972h-VAC14","type":"exact"}],"termid":"PR:P87145"}


id: PBO:0050333
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"heterogeneous nuclear ribonucleoprotein A1 pseudogene 35","termid":"PBO:0050333"}


id: GO:0047255
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: galactogen + UDP-galactose = 1,6-beta-D-galctosylgalactogen + UDP.","definition_xrefs":["EC:2.4.1.205","MetaCyc:2.4.1.205-RXN"],"direct_ancestors":[{"relation_name":"is_a","term_name":"UDP-galactosyltransferase activity","termid":"GO:0035250"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016757"},{"rel_name":"is_a","termid":"GO:0016740"}],"interesting_parent_ids":["GO:0003824","GO:0016740","GO:0016757","GO:0003674"],"is_obsolete":false,"name":"galactogen 6-beta-galactosyltransferase activity","synonyms":[{"name":"1,6-D-galactosyltransferase activity","type":"related"},{"name":"UDP-galactose:galactogen beta-1,6-D-galactosyltransferase activity","type":"related"},{"name":"UDPgalactose:galactogen beta-1,6-D-galactosyltransferase activity","type":"related"},{"name":"beta-(1,6)-D-galactosyltransferase activity","type":"related"},{"name":"galactogen 6beta-galactosyltransferase activity","type":"related"},{"name":"uridine diphosphogalactose-galactogen galactosyltransferase activity","type":"related"}],"termid":"GO:0047255"}


id: PBO:0058541
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 6086","termid":"PBO:0058541"}


id: GO:0050462
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: phosphoenolpyruvate + N-acetyl-D-mannosamine + H2O = phosphate + N-acetylneuraminate.","definition_xrefs":["MetaCyc:N-ACETYLNEURAMINATE-SYNTHASE-RXN","EC:2.5.1.56"],"direct_ancestors":[{"relation_name":"is_a","term_name":"transferase activity, transferring alkyl or aryl (other than methyl) groups","termid":"GO:0016765"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016765"}],"interesting_parent_ids":["GO:0016740","GO:0016765","GO:0003674","GO:0003824"],"is_obsolete":false,"name":"N-acetylneuraminate synthase activity","secondary_identifiers":["RHEA:19273"],"synonyms":[{"name":"(NANA)condensing enzyme activity","type":"related"},{"name":"N-acetylneuraminate pyruvate-lyase (pyruvate-phosphorylating) activity","type":"related"},{"name":"N-acetylneuraminic acid synthase activity","type":"related"},{"name":"NeuAc synthase activity","type":"related"},{"name":"phosphoenolpyruvate:N-acetyl-D-mannosamine C-(1-carboxyvinyl)transferase (phosphate-hydrolysing, 2-carboxy-2-oxoethyl-forming)","type":"related"}],"termid":"GO:0050462"}


id: SO:0001336
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Wyosine is a modified guanosine base feature.","direct_ancestors":[{"relation_name":"is_a","term_name":"modified_guanosine","termid":"SO:0001276"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"wyosine","secondary_identifiers":["RNAMOD:041"],"synonyms":[{"name":"IMG","type":"exact"}],"termid":"SO:0001336"}


id: GO:0042565
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"A complex which usually consists of three components, e.g. in Xenopus and yeast, the export receptor CRM1 (also known as exportin 1), the Ran protein and any RNA with a nuclear export sequence (NES). The complex acts to export RNA molecules with a NES from the nucleus through a nuclear pore.","definition_xrefs":["PMID:9323123","GOC:jl"],"direct_ancestors":[{"relation_name":"is_a","term_name":"nucleocytoplasmic transport complex","termid":"GO:0031074"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005575"},{"rel_name":"is_a","termid":"GO:0032991"}],"interesting_parent_ids":["GO:0032991","GO:0005575"],"is_obsolete":false,"name":"RNA nuclear export complex","termid":"GO:0042565"}


id: PBO:0017741
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mitochondrial thiosulfate sulfurtransferase Rdl2 (predicted)","termid":"PBO:0017741"}


id: MONDO:0017731
data:
  {"annotated_genes":["SJAG_04819","SJAG_01868","SJAG_02949"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[87010],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012221"},{"annotations":[87013],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0012222"},{"annotations":[87311,87310],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"MONDO:0009737"}]},"cv_name":"mondo","direct_ancestors":[{"relation_name":"is_a","term_name":"lysosomal storage disease","termid":"MONDO:0002561"}],"gene_count":3,"genes_by_uniquename":{"SJAG_01868":null,"SJAG_02949":null,"SJAG_04819":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005066"},{"rel_name":"is_a","termid":"MONDO:0002561"}],"interesting_parent_ids":["MONDO:0002561","MONDO:0005066"],"is_obsolete":false,"name":"glycoproteinosis","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["GARD:10670","UMLS:C5681075","MEDGEN:1842769","icd11.foundation:979972142","Orphanet:309279"],"termid":"MONDO:0017731","terms_by_termid":{"MONDO:0009737":null,"MONDO:0012221":null,"MONDO:0012222":null},"xrefs":{"Monarch":{"xref_id":"0017731"}}}


id: MONDO:0030669
data:
  {"annotated_genes":["SJAG_04537"],"annotation_feature_type":"gene","cv_annotations":{"mondo":[{"annotations":[89090],"is_not":false,"summary":null,"term":"MONDO:0030669"}]},"cv_name":"mondo","definition":"A severe autosomal recessive developmental disorder characterized by multiple intestinal atresia apparent soon after birth. Affected infants have a distended abdomen and do not pass meconium. There is some evidence of inflammatory bowel disease. Death occurs in the first weeks of life. Some patients may also have immunodeficiency.","definition_xrefs":["OMIM:619708"],"direct_ancestors":[{"relation_name":"is_a","term_name":"PI4KA-related disorder","termid":"MONDO:1040012"}],"gene_count":1,"genes_by_uniquename":{"SJAG_04537":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005559"},{"rel_name":"is_a","termid":"MONDO:0002320"}],"interesting_parent_ids":["MONDO:0005559","MONDO:0002320"],"is_obsolete":false,"name":"gastrointestinal defects and immunodeficiency syndrome 2","references_by_uniquename":{"PB_REF:0000006":null},"secondary_identifiers":["UMLS:C5676901","MEDGEN:1811526"],"synonyms":[{"name":"GIDID2","type":"exact"},{"name":"gastrointestinal defects and immunodeficiency syndrome 2","type":"exact"},{"name":"multiple intestinal atresia with or without leukopenia","type":"exact"}],"termid":"MONDO:0030669","terms_by_termid":{"MONDO:0030669":null},"xrefs":{"Monarch":{"xref_id":"0030669"}}}


id: PBO:0003126
data:
  {"annotation_feature_type":"gene","cv_name":"EC numbers","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"1.1.1.-","termid":"PBO:0003126"}


id: PBO:0077961
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ala (anticodon AGC) 14-2","termid":"PBO:0077961"}


id: PBO:0062073
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"olfactory receptor family 4 subfamily A member 4 pseudogene","termid":"PBO:0062073"}


id: GO:0048056
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which relatively unspecialized cells acquire the specialized features of R3 and R4 photoreceptors. An example of this process is found in Drosophila melanogaster.","definition_xrefs":["GOC:jid"],"direct_ancestors":[{"relation_name":"is_a","term_name":"compound eye photoreceptor cell differentiation","termid":"GO:0001751"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"R3/R4 cell differentiation","termid":"GO:0048056"}


id: PBO:0077982
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"tRNA-Ala (anticodon TGC) 4-1","termid":"PBO:0077982"}


id: PBO:0051694
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"INO80 complex subunit C","termid":"PBO:0051694"}


id: PBO:0062807
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"oxysterol binding protein like 7","termid":"PBO:0062807"}


id: GO:0097028
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which a precursor cell type acquires the specialized features of a dendritic cell. A dendritic cell is a leukocyte of dendritic lineage specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation.","definition_xrefs":["CL:0000451","GOC:pr"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mononuclear cell differentiation","termid":"GO:1903131"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"dendritic cell differentiation","termid":"GO:0097028"}


id: GO:0030519
data:
  {"annotated_genes":["SJAG_01567"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[99381],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0062064"}]},"cv_name":"molecular_function","definition":"Binding to a small nucleolar ribonucleoprotein particle.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ribonucleoprotein complex binding","termid":"GO:0043021"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01567":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0005488"}],"interesting_parent_ids":["GO:0003674","GO:0005488"],"is_obsolete":false,"name":"snoRNP binding","references_by_uniquename":{"GO_REF:0000107":null},"termid":"GO:0030519","terms_by_termid":{"GO:0062064":null}}


id: GO:0003809
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the preferential cleavage of Arg-Gly; activates fibrinogen to fibrin and releases fibrinopeptide A and B.","definition_xrefs":["GOC:curators"],"gene_count":0,"genotype_count":0,"name":"obsolete thrombin activity (obsolete GO:0003809)","synonyms":[{"name":"E thrombin","type":"related"},{"name":"activated blood-coagulation factor II","type":"related"},{"name":"beta-thrombin","type":"related"},{"name":"blood-coagulation factor IIa","type":"related"},{"name":"factor IIa","type":"related"},{"name":"fibrinogenase activity","type":"related"},{"name":"gamma-thrombin","type":"related"},{"name":"thrombase activity","type":"related"},{"name":"thrombin activity","type":"exact"},{"name":"thrombin-C","type":"related"},{"name":"thrombofort","type":"related"},{"name":"topical","type":"related"},{"name":"tropostasin","type":"related"}],"termid":"GO:0003809"}


id: GO:0008966
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: alpha-D-glucosamine 1-phosphate = D-glucosamine 6-phosphate.","definition_xrefs":["RHEA:23424","EC:5.4.2.10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"intramolecular phosphotransferase activity","termid":"GO:0016868"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016853"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016853","GO:0003824"],"is_obsolete":false,"name":"phosphoglucosamine mutase activity","secondary_identifiers":["KEGG_REACTION:R02060","MetaCyc:5.4.2.10-RXN"],"synonyms":[{"name":"D-glucosamine 1,6-phosphomutase activity","type":"related"},{"name":"alpha-D-glucosamine 1,6-phosphomutase activity","type":"related"}],"termid":"GO:0008966"}


id: _global:has_target_start_location
data:
  {"annotation_feature_type":"gene","cv_name":"external","definition":"This relationship holds between p and l when p is a transport or localization process in which the outcome is to move some cargo c from some initial location l to some destination.","direct_ancestors":[{"relation_name":"is_a","term_name":"go_annotation_extension_relation","termid":"_global:go_annotation_extension_relation"},{"relation_name":"is_a","term_name":"results_in_transport_to_from_or_in","termid":"_global:results_in_transport_to_from_or_in"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"has_target_start_location","secondary_identifiers":["RO:0002338"],"termid":"_global:has_target_start_location"}


id: GO:0046361
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving 2-oxobutyrate, the anion of the organic acid 2-oxobutyric acid, which contains a ketone group on carbon 2.","definition_xrefs":["PMID:17034760"],"direct_ancestors":[{"relation_name":"is_a","term_name":"short-chain fatty acid metabolic process","termid":"GO:0046459"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0044281"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"}],"interesting_parent_ids":["GO:0044281","GO:0008150","GO:0006629"],"is_obsolete":false,"name":"2-oxobutyrate metabolic process","synonyms":[{"name":"2-oxobutyrate metabolism","type":"exact"},{"name":"alpha-ketobutyrate metabolic process","type":"exact"},{"name":"alpha-ketobutyrate metabolism","type":"exact"}],"termid":"GO:0046361"}


id: PBO:0090323
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"poly(A) binding protein Nab3","termid":"PBO:0090323"}


id: PBO:0082516
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Catalytic subunit of the NatC type N-terminal acetyltransferase (NAT); involved in subcellular targeting of select N-terminally acetylated substrates to the Golgi apparatus (Arl3p and Grh1p) and the inner nuclear membrane (Trm1p); required for replication of dsRNA virus; human NatC ortholog, NAA30, functionally complements the null, requiring either auxiliary subunit Mak10p or co-expression of human ortholog, NAA35; NAA60, the human NatF gene, also complements the null allele","termid":"PBO:0082516"}


id: PBO:0072574
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribonucleotide reductase M2 polypeptide pseudogene 2","termid":"PBO:0072574"}


id: PBO:0045404
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DPPA3 pseudogene 6","termid":"PBO:0045404"}


id: FYPO:0005362
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which chromosome recapture is abnormal during metaphase of mitosis. Chromosome recapture is the reattachment of chromosomes which have become detached from the spindle.","definition_xrefs":["PomBase:mah","GO:1990942","PMID:18256284"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal mitotic chromosome congression","termid":"FYPO:0000030"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"part_of","termid":"FYPO:0000631"},{"rel_name":"part_of","termid":"FYPO:0005447"},{"rel_name":"part_of","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000337"},{"rel_name":"is_a","termid":"FYPO:0000641"},{"rel_name":"part_of","termid":"FYPO:0000337"},{"rel_name":"part_of","termid":"FYPO:0000641"},{"rel_name":"is_a","termid":"FYPO:0001985"}],"interesting_parent_ids":["FYPO:0000138","FYPO:0000002","FYPO:0000641","FYPO:0000337","FYPO:0005447","FYPO:0001985","FYPO:0000631","FYPO:0001320"],"is_obsolete":false,"name":"abnormal mitotic metaphase chromosome recapture","synonyms":[{"name":"abnormal chromosome recapture during mitotic metaphase","type":"exact"},{"name":"abnormal kinetochore retrieval in mitotic metaphase","type":"exact"},{"name":"abnormal mitotic kinetochore retrieval","type":"exact"},{"name":"abnormal mitotic metaphase chromosome recapture during vegetative growth","type":"exact"},{"name":"abnormal mitotic metaphase chromosome retrieval to the spindle pole body","type":"exact"},{"name":"abnormal mitotic sister kinetochore recapture","type":"exact"}],"termid":"FYPO:0005362"}


id: PBO:0030847
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-cell_cycle_arrest_in_mitotic_G2_phase_during_response_to_DNA_damage","termid":"PBO:0030847"}


id: MONDO:0001738
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete osteopetrosis (obsolete MONDO:0001738)","termid":"MONDO:0001738","xrefs":{"Monarch":{"xref_id":"0001738"}}}


id: GO:0008648
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. A family of hormones that stimulate secretion of saliva and cause smooth muscle contraction and vasodilation.","definition_xrefs":["ISBN:0198506732","ISBN:0721662544"],"gene_count":0,"genotype_count":0,"name":"obsolete tachykinin (obsolete GO:0008648)","synonyms":[{"name":"tachykinin","type":"exact"}],"termid":"GO:0008648"}


id: SO:0002223
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Sequences that decrease interactions between biological regions, such as between a promoter, its 5' context and/or the translational unit(s) it regulates. Spacers can affect regulation of translation, transcription, and other biological processes.","definition_xrefs":["PMID:28422998","PMID:24933158","PMID:27034378","PMID:20843779"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulatory_region","termid":"SO:0005836"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"inert_DNA_spacer","secondary_identifiers":["doi:10.1101/584664"],"synonyms":[{"name":"Inert DNA Spacer","type":"related"}],"termid":"SO:0002223"}


id: GO:0060628
data:
  {"annotated_genes":["SJAG_01166"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[78424],"is_not":false,"summary":null,"term":"GO:0060628"}]},"cv_name":"biological_process","definition":"Any process that modulates the rate, frequency, or extent of ER to Golgi vesicle-mediated transport, the directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.","definition_xrefs":["GOC:tb","GOC:dph"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of intracellular transport","termid":"GO:0032386"},{"relation_name":"is_a","term_name":"regulation of vesicle-mediated transport","termid":"GO:0060627"},{"relation_name":"regulates","term_name":"endoplasmic reticulum to Golgi vesicle-mediated transport","termid":"GO:0006888"}],"gene_count":1,"genes_by_uniquename":{"SJAG_01166":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0006810"},{"rel_name":"regulates","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0016192","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"regulation of ER to Golgi vesicle-mediated transport","references_by_uniquename":{"GO_REF:0000033":null},"termid":"GO:0060628","terms_by_termid":{"GO:0060628":null}}


id: GO:0072368
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of lipid transport by stopping, preventing, or reducing the frequency, rate or extent of transcription from an RNA polymerase II promoter.","definition_xrefs":["GOC:mah","GOC:BHF"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of lipid transport by negative regulation of transcription from RNA polymerase II promoter (obsolete GO:0072368)","synonyms":[{"name":"regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter","type":"exact"}],"termid":"GO:0072368"}


id: GO:0050737
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the transfer of a hydroxycinnamoyl group to an oxygen atom on the acceptor molecule.","definition_xrefs":["GOC:ai"],"direct_ancestors":[{"relation_name":"is_a","term_name":"O-acyltransferase activity","termid":"GO:0008374"},{"relation_name":"is_a","term_name":"hydroxycinnamoyltransferase activity","termid":"GO:0050734"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016746"},{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0016746","GO:0003824","GO:0016740","GO:0003674"],"is_obsolete":false,"name":"O-hydroxycinnamoyltransferase activity","termid":"GO:0050737"}


id: GO:0070599
data:
  {"annotated_genes":["SJAG_04184","SJAG_01028","SJAG_04236","SJAG_03057","SJAG_04666","SJAG_00424","SJAG_00610","SJAG_02278","SJAG_02916"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[75130,75302,80579,72390,73179],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0070600"},{"annotations":[96819,104769,91282,94287],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:0070610"}]},"cv_name":"biological_process","definition":"The chemical reactions and pathways involving (1->3)-alpha-D-glucans, compounds composed of glucose residues linked by (1->3)-alpha-D-glucosidic bonds, found in the walls of ascospores.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cell wall (1->3)-alpha-glucan metabolic process","termid":"GO:0070597"},{"relation_name":"is_a","term_name":"fungal-type cell wall polysaccharide metabolic process","termid":"GO:0071966"}],"gene_count":9,"genes_by_uniquename":{"SJAG_00424":null,"SJAG_00610":null,"SJAG_01028":null,"SJAG_02278":null,"SJAG_02916":null,"SJAG_03057":null,"SJAG_04184":null,"SJAG_04236":null,"SJAG_04666":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0005975"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"part_of","termid":"GO:0071554"}],"interesting_parent_ids":["GO:0005975","GO:0008150","GO:0071554"],"is_obsolete":false,"name":"fungal-type cell wall (1->3)-alpha-glucan metabolic process","references_by_uniquename":{"GO_REF:0000033":null,"GO_REF:0000107":null},"synonyms":[{"name":"ascospore wall 1,3-alpha-glucan metabolic process","type":"exact"},{"name":"ascospore wall 1,3-alpha-glucan metabolism","type":"exact"},{"name":"ascospore wall alpha-1,3 glucan metabolic process","type":"exact"},{"name":"ascospore wall alpha-1,3 glucan metabolism","type":"exact"}],"termid":"GO:0070599","terms_by_termid":{"GO:0070600":null,"GO:0070610":null}}


id: FYPO:0005947
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A phenotype in which vegetative cell population growth is normal (i.e. indistinguishable from wild type) in a medium containing potassium chloride.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0002057"},{"rel_name":"is_a","termid":"FYPO:0000257"}],"interesting_parent_ids":["FYPO:0002058","FYPO:0000139","FYPO:0000003","FYPO:0002060","FYPO:0000257","FYPO:0002057"],"is_obsolete":false,"name":"normal growth on potassium chloride","synonyms":[{"name":"normal cell population growth in presence of potassium chloride","type":"exact"},{"name":"normal cell population growth on KCl","type":"exact"},{"name":"normal cell population growth on potassium chloride","type":"exact"},{"name":"normal cellular response to potassium chloride","type":"related"},{"name":"normal vegetative cell population growth on potassium chloride","type":"exact"}],"termid":"FYPO:0005947"}


id: GO:0010696
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that increases the rate, frequency or extent of the process involving the release of duplicated mitotic spindle pole bodies (SPBs) and their migration away from each other within the nuclear membrane.","definition_xrefs":["PMID:18500339","GOC:dph","PMID:16792804","GOC:tb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of mitotic spindle pole body separation","termid":"GO:0010695"},{"relation_name":"is_a","term_name":"positive regulation of cell cycle process","termid":"GO:0090068"},{"relation_name":"positively_regulates","term_name":"initial mitotic spindle pole body separation","termid":"GO:0000073"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"regulates","termid":"GO:0007049"},{"rel_name":"positively_regulates","termid":"GO:0007049"}],"interesting_parent_ids":["GO:0008150","GO:0007049"],"is_obsolete":false,"name":"positive regulation of mitotic spindle pole body separation","synonyms":[{"name":"positive regulation of SPB separation","type":"exact"}],"termid":"GO:0010696"}


id: GO:0052706
data:
  {"annotated_genes":["SJAG_00832"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[75626],"is_not":false,"summary":null,"term":"GO:0052706"}]},"cv_name":"molecular_function","definition":"Catalysis of the reaction: L-histidine + 3 S-adenosyl-L-methionine <=> 3 H(+) + hercynine + 3 S-adenosyl-L-homocysteine. This reaction is the addition of three methyl groups to L-histidine to form N-alpha,N-alpha,N-alpha-trimethyl-L-histidine (also known as hercynine).","definition_xrefs":["RHEA:38471"],"direct_ancestors":[{"relation_name":"is_a","term_name":"S-adenosylmethionine-dependent methyltransferase activity","termid":"GO:0008757"}],"gene_count":1,"genes_by_uniquename":{"SJAG_00832":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016740"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016741"}],"interesting_parent_ids":["GO:0016740","GO:0003824","GO:0003674","GO:0016741"],"is_obsolete":false,"name":"L-histidine N(alpha)-methyltransferase activity","references_by_uniquename":{"GO_REF:0000033":null},"secondary_identifiers":["MetaCyc:RXN-14431","KEGG_REACTION:R01169","EC:2.1.1.44"],"synonyms":[{"name":"S-adenosyl-L-methionine:L-histidine Nalpha-methyltransferase activity","type":"exact"},{"name":"S-adenosyl-L-methionine:L-histidine alpha-N-methyltransferase activity","type":"exact"},{"name":"histidine N-methyltransferase activity","type":"exact"},{"name":"histidine methyltransferase activity","type":"exact"},{"name":"histidine-alpha-N-methyltransferase activity","type":"exact"}],"termid":"GO:0052706","terms_by_termid":{"GO:0052706":null}}


id: GO:0072315
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The process in which the developmental fate of a cell becomes restricted such that it will develop into a metanephric glomerular epithelial cell. Metanephric glomerular epithelial cells are specialized epithelial cells that form part of the metanephric glomerulus; there are two types, metanephric glomerular parietal epithelial cells and metanephric glomerular visceral epithelial cells.","definition_xrefs":["GOC:mtg_kidney_jan10"],"direct_ancestors":[{"relation_name":"is_a","term_name":"glomerular epithelial cell fate commitment","termid":"GO:0072314"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"metanephric glomerular epithelial cell fate commitment","termid":"GO:0072315"}


id: SO:0002130
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"A transcript that contains a CDS but has no stop codon before the polyA site is reached.","definition_xrefs":["GENCODE:http://www.gencodegenes.org/gencode_biotypes.html"],"direct_ancestors":[{"relation_name":"is_a","term_name":"mRNA","termid":"SO:0000234"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"NSD_transcript","synonyms":[{"name":"non_stop_decay_transcript","type":"exact"}],"termid":"SO:0002130"}


id: PBO:0057202
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 374a","termid":"PBO:0057202"}


id: FYPO:0007340
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cell phenotype observed in the vegetative growth phase of the life cycle in which a protein localizes to a larger portion of the chromosome than normal in the euchromatic regions.","definition_xrefs":["PMID:18957202","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"altered spatial extent of protein localization to chromatin","termid":"FYPO:0007465"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000138"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0005447","FYPO:0000138","FYPO:0001320","FYPO:0000002"],"is_obsolete":false,"name":"increased spatial extent of protein localization to euchromatin","synonyms":[{"name":"increased spatial extent of protein localisation to euchromatin","type":"exact"},{"name":"increased spatial extent of protein localization to euchromatin during mitotic cell cycle","type":"related"},{"name":"increased spatial extent of protein localization to euchromatin during vegetative growth","type":"exact"}],"termid":"FYPO:0007340"}


id: GO:0015633
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Zn2+(out) = ADP + phosphate + Zn2+(in).","definition_xrefs":["RHEA:29795"],"direct_ancestors":[{"relation_name":"is_a","term_name":"zinc ion transmembrane transporter activity","termid":"GO:0005385"},{"relation_name":"is_a","term_name":"ATPase-coupled monoatomic cation transmembrane transporter activity","termid":"GO:0019829"},{"relation_name":"is_a","term_name":"ABC-type transporter activity","termid":"GO:0140359"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0022857"},{"rel_name":"is_a","termid":"GO:0005215"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0022857","GO:0005215","GO:0003674"],"is_obsolete":false,"name":"ABC-type zinc transporter activity","secondary_identifiers":["MetaCyc:ABC-63-RXN","EC:7.2.2.20"],"synonyms":[{"name":"ATP-dependent zinc transmembrane transporter activity","type":"broad"},{"name":"ATPase-coupled zinc transmembrane transporter activity","type":"broad"},{"name":"zinc porter activity","type":"related"},{"name":"zinc transporting ATPase activity","type":"broad"},{"name":"zinc-transporting ATPase activity","type":"broad"}],"termid":"GO:0015633"}


id: MONDO:0010492
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any pituitary gland adenoma in which the cause of the disease is a mutation in the GPR101 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"acromegaly","termid":"MONDO:0019933"},{"relation_name":"is_a","term_name":"familial isolated pituitary adenoma","termid":"MONDO:0017824"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pituitary adenoma, growth hormone-secreting, 2","secondary_identifiers":["DOID:0112007","OMIM:300943","GARD:15274","MEDGEN:860846","UMLS:C4012409"],"synonyms":[{"name":"GPR101 pituitary gland adenoma","type":"exact"},{"name":"PAGH2","type":"related"},{"name":"PITA2","type":"related"},{"name":"acromegaly due to pituitary adenoma 2","type":"related"},{"name":"acromegaly, X-linked","type":"related"},{"name":"pituitary adenoma 2, GH-secreting","type":"exact"},{"name":"pituitary adenoma 2, Growth hormone-secreting","type":"related"},{"name":"pituitary adenoma 2, growth hormone-secreting","type":"related"},{"name":"pituitary adenoma, Growth hormone-secreting, type 2","type":"exact"},{"name":"pituitary adenoma, growth hormone-secreting, 2","type":"exact"},{"name":"pituitary gland adenoma caused by mutation in GPR101","type":"exact"}],"termid":"MONDO:0010492","xrefs":{"Monarch":{"xref_id":"0010492"}}}


id: PBO:0033798
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-normal_protein_phosphorylation_during_cellular_response_to_methyl_methanesulfonate","termid":"PBO:0033798"}


id: FYPO:0003898
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A vegetative cell population growth phenotype in which cells grow normally (i.e. indistinguishably from wild type) in a medium containing glycerol and ethanol as the carbon sources.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"normal vegetative cell population growth","termid":"FYPO:0001357"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000003"},{"rel_name":"is_a","termid":"FYPO:0000257"},{"rel_name":"is_a","termid":"FYPO:0002060"},{"rel_name":"is_a","termid":"FYPO:0000139"},{"rel_name":"is_a","termid":"FYPO:0002058"},{"rel_name":"is_a","termid":"FYPO:0002057"}],"interesting_parent_ids":["FYPO:0000257","FYPO:0002060","FYPO:0002057","FYPO:0000003","FYPO:0002058","FYPO:0000139"],"is_obsolete":false,"name":"normal growth on glycerol/ethanol carbon source","synonyms":[{"name":"normal cell population growth on glycerol/ethanol carbon source","type":"exact"},{"name":"normal vegetative cell population growth on glycerol/ethanol carbon source","type":"exact"}],"termid":"FYPO:0003898"}


id: GO:0043773
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reactions: (1) GTP + F420-0 + L-glutamate = GDP + phosphate + F420-1, and (2) GTP + F420-1 + L-glutamate = GDP + phosphate + gamma-F420-2. This is the GTP-dependent successive addition of two L-glutamates to the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) to form F420-0-glutamyl-glutamate (F420-2), with a gamma-linkage between the two glutamates.","definition_xrefs":["PMID:17669425"],"direct_ancestors":[{"relation_name":"is_a","term_name":"acid-amino acid ligase activity","termid":"GO:0016881"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0016874"}],"interesting_parent_ids":["GO:0003824","GO:0016874","GO:0003674"],"is_obsolete":false,"name":"coenzyme F420-0 gamma-glutamyl ligase activity","synonyms":[{"name":"F420-0 gamma-glutamyl ligase activity","type":"exact"}],"termid":"GO:0043773"}


id: GO:1905226
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that modulates the frequency, rate or extent of adhesion of symbiont to host epithelial cell.","definition_xrefs":["GOC:TermGenie","GO_REF:0000058","PMID:15659068"],"gene_count":0,"genotype_count":0,"name":"obsolete regulation of adhesion of symbiont to host epithelial cell (obsolete GO:1905226)","termid":"GO:1905226"}


id: PBO:0043393
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"carboxymethylenebutenolidase homolog","termid":"PBO:0043393"}


id: GO:0098636
data:
  {"annotation_feature_type":"gene","cv_name":"cellular_component","definition":"Any protein complex that is capable of carrying out some part of the process of cell adhesion to the cell matrix or to another cell.","definition_xrefs":["GOC:dos"],"direct_ancestors":[{"relation_name":"is_a","term_name":"protein-containing complex","termid":"GO:0032991"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0032991"},{"rel_name":"is_a","termid":"GO:0005575"}],"interesting_parent_ids":["GO:0005575","GO:0032991"],"is_obsolete":false,"name":"protein complex involved in cell adhesion","secondary_identifiers":["GO:1990307"],"synonyms":[{"name":"cell adhesion complex","type":"related"}],"termid":"GO:0098636"}


id: PBO:0086677
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Putative protein of unknown function; identified by gene-trapping, microarray analysis, and genome-wide homology searches; mRNA identified as translated by ribosome profiling data; SWAT-GFP, seamless-GFP and mCherry fusion proteins localize to the endoplasmic reticulum; partially overlaps the dubious ORF YBR126W-B","termid":"PBO:0086677"}


id: MONDO:0019957
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"PPoma is a type of pancreatic endocrine tumor that hypersecretes pancreatic polypeptide (PP) but that does not cause a hypersecretion syndrome (is non-functioning) and instead presents with only non-specific symptoms such as weight loss, abdominal pain, jaundice, diarrhea and/or an abdominal mass, hence leading to a late diagnosis. PPoma can be associated with multiple endocrine neoplasia 1 (MEN-1).","definition_xrefs":["Orphanet:97278"],"direct_ancestors":[{"relation_name":"is_a","term_name":"pancreatic neuroendocrine tumor","termid":"MONDO:0019954"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004335"}],"interesting_parent_ids":["MONDO:0004335"],"is_obsolete":false,"name":"PPoma","secondary_identifiers":["ICD9:239.89","icd11.foundation:1180851464","NCIT:C67453","UMLS:C0346407","SCTID:255039001","GARD:19358","MEDGEN:577392","ICDO:8152/1"],"synonyms":[{"name":"pancreatic polypeptide neoplasm","type":"exact"},{"name":"pancreatic polypeptide tumor","type":"exact"},{"name":"pancreatic polypeptide tumour","type":"exact"},{"name":"pancreatic polypeptidoma","type":"exact"}],"termid":"MONDO:0019957","xrefs":{"Monarch":{"xref_id":"0019957"}}}


id: MONDO:0009169
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Endomyocardial fibroelastosis is a cause of unexplained childhood cardiac insufficiency. It results from diffuse thickening of the endocardium leading to dilated myocardiopathy in the majority of cases and restrictive myocardiopathy in rare cases. It may occur as a primary disorder or may be secondary to another cardiac malformation, notably aortic stenosis or atresia.","definition_xrefs":["Orphanet:2022"],"direct_ancestors":[{"relation_name":"excluded_subClassOf","term_name":"familial dilated cardiomyopathy","termid":"MONDO:0016333"},{"relation_name":"excluded_subClassOf","term_name":"non-familial dilated cardiomyopathy","termid":"MONDO:0016338"},{"relation_name":"excluded_subClassOf","term_name":"familial restrictive cardiomyopathy","termid":"MONDO:0016340"},{"relation_name":"excluded_subClassOf","term_name":"non-familial restrictive cardiomyopathy","termid":"MONDO:0016345"},{"relation_name":"is_a","term_name":"endocardium disorder","termid":"MONDO:0000470"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005267"}],"interesting_parent_ids":["MONDO:0005267"],"is_obsolete":false,"name":"endocardial fibroelastosis","secondary_identifiers":["DOID:12929","OMIM:226000","NANDO:2100060","MedDRA:10014663","NCIT:C98922","NORD:1090","EFO:0007251","ICD9:425.3","ICD10CM:I42.4","MEDGEN:4041","MESH:D004695","UMLS:C0014117","icd11.foundation:1971033419","GARD:6336","NANDO:2200235","SCTID:65457005"],"synonyms":[{"name":"EFE","type":"related"},{"name":"Elastomyofibrosis","type":"exact"},{"name":"endocardial fibroelastosis","type":"exact"},{"name":"endomyocardial fibroelastosis","type":"related"}],"termid":"MONDO:0009169","xrefs":{"Monarch":{"xref_id":"0009169"}}}


id: MONDO:1010037
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Cleft palate that occurs in non-human animals.","definition_xrefs":["MONDO:patterns/nonhuman_disease"],"direct_ancestors":[{"relation_name":"is_a","term_name":"developmental defect during embryogenesis, non-human animal","termid":"MONDO:1011310"},{"relation_name":"is_a","term_name":"hereditary disease, non-human animal","termid":"MONDO:1011321"},{"relation_name":"is_a","term_name":"musculoskeletal system disorder, non-human animal","termid":"MONDO:1011335"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cleft palate, non-human animal","secondary_identifiers":["OMIA:000197"],"termid":"MONDO:1010037","xrefs":{"Monarch":{"xref_id":"1010037"}}}


id: GO:0008206
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The chemical reactions and pathways involving bile acids, a group of steroid carboxylic acids occurring in bile, where they are present as the sodium salts of their amides with glycine or taurine.","definition_xrefs":["GOC:go_curators"],"direct_ancestors":[{"relation_name":"is_a","term_name":"steroid metabolic process","termid":"GO:0008202"},{"relation_name":"is_a","term_name":"monocarboxylic acid metabolic process","termid":"GO:0032787"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006629"},{"rel_name":"is_a","termid":"GO:0044281"}],"interesting_parent_ids":["GO:0008150","GO:0006629","GO:0044281"],"is_obsolete":false,"name":"bile acid metabolic process","secondary_identifiers":["Reactome:R-HSA-194068"],"synonyms":[{"name":"bile acid metabolism","type":"exact"}],"termid":"GO:0008206"}


id: GO:0004753
data:
  {"annotated_genes":["SJAG_01061","SJAG_02388"],"annotation_feature_type":"gene","cv_annotations":{"molecular_function":[{"annotations":[57498],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004754"},{"annotations":[111670],"is_not":false,"rel_names":["is_a"],"summary":null,"term":"GO:0004755"}]},"cv_name":"molecular_function","definition":"Catalysis of the cleavage of N6-(L-1,3-dicarboxypropyl)-L-lysine to release an amino acid (lysine or glutamate), with the concomitant reduction of an electron acceptor.","definition_xrefs":["GOC:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor","termid":"GO:0016646"}],"gene_count":2,"genes_by_uniquename":{"SJAG_01061":null,"SJAG_02388":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016491"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003824","GO:0003674","GO:0016491"],"is_obsolete":false,"name":"saccharopine dehydrogenase activity","references_by_uniquename":{"GO_REF:0000003":null,"GO_REF:0000107":null},"synonyms":[{"name":"lysine-2-oxoglutarate reductase activity","type":"related"},{"name":"lysine-ketoglutarate reductase activity","type":"related"}],"termid":"GO:0004753","terms_by_termid":{"GO:0004754":null,"GO:0004755":null}}


id: PBO:0055773
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"LNX1 antisense RNA 2","termid":"PBO:0055773"}


id: PBO:0000735
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"actin binding protein, coronin Crn1","termid":"PBO:0000735"}


id: GO:0050083
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: (3S)-3-carboxy-3-hydroxypropanoyl-CoA = acetyl-CoA + glyoxylate.","definition_xrefs":["MetaCyc:MALYL-COA-LYASE-RXN","EC:4.1.3.24"],"direct_ancestors":[{"relation_name":"is_a","term_name":"oxo-acid-lyase activity","termid":"GO:0016833"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0003674"},{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"}],"interesting_parent_ids":["GO:0003674","GO:0003824","GO:0016829"],"is_obsolete":false,"name":"malyl-CoA lyase activity","secondary_identifiers":["RHEA:16629"],"synonyms":[{"name":"(3S)-3-carboxy-3-hydroxypropanoyl-CoA glyoxylate-lyase (acetyl-CoA-forming)","type":"related"},{"name":"(3S)-3-carboxy-3-hydroxypropanoyl-CoA glyoxylate-lyase activity","type":"related"},{"name":"malyl-coenzyme A lyase activity","type":"related"}],"termid":"GO:0050083"}


id: GO:0006890
data:
  {"annotated_genes":["SJAG_00557","SJAG_04402","SJAG_02234","SJAG_01927","SJAG_04391","SJAG_04070","SJAG_03933","SJAG_04592","SJAG_04956","SJAG_04701","SJAG_02586","SJAG_04340","SJAG_05030","SJAG_01508","SJAG_01166","SJAG_01940","SJAG_04474","SJAG_04569","SJAG_03499","SJAG_01516","SJAG_00192","SJAG_05209","SJAG_02418","SJAG_02419","SJAG_02204","SJAG_02482"],"annotation_feature_type":"gene","cv_annotations":{"biological_process":[{"annotations":[65276,67027,68555,70554,72628,72786,73014,74125,74483,75416,75674,77099,77445,78423,79386,79681,79819,92418,94760,95095,99643,100350,100441,101372,115622],"is_not":false,"summary":null,"term":"GO:0006890"},{"annotations":[115614],"is_not":false,"rel_names":["regulates"],"summary":null,"term":"GO:2000156"}]},"cv_name":"biological_process","definition":"The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG.","definition_xrefs":["ISBN:0716731363","PMID:16510524"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Golgi vesicle transport","termid":"GO:0048193"}],"gene_count":26,"genes_by_uniquename":{"SJAG_00192":null,"SJAG_00557":null,"SJAG_01166":null,"SJAG_01508":null,"SJAG_01516":null,"SJAG_01927":null,"SJAG_01940":null,"SJAG_02204":null,"SJAG_02234":null,"SJAG_02418":null,"SJAG_02419":null,"SJAG_02482":null,"SJAG_02586":null,"SJAG_03499":null,"SJAG_03933":null,"SJAG_04070":null,"SJAG_04340":null,"SJAG_04391":null,"SJAG_04402":null,"SJAG_04474":null,"SJAG_04569":null,"SJAG_04592":null,"SJAG_04701":null,"SJAG_04956":null,"SJAG_05030":null,"SJAG_05209":null},"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0051179"},{"rel_name":"is_a","termid":"GO:0008150"},{"rel_name":"is_a","termid":"GO:0006810"},{"rel_name":"is_a","termid":"GO:0016192"}],"interesting_parent_ids":["GO:0051179","GO:0016192","GO:0008150","GO:0006810"],"is_obsolete":false,"name":"retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum","references_by_uniquename":{"GO_REF:0000002":null,"GO_REF:0000033":null,"GO_REF:0000107":null},"secondary_identifiers":["GO:0048220","Reactome:R-HSA-6811434"],"synonyms":[{"name":"cis-Golgi to rough ER transport","type":"exact"},{"name":"cis-Golgi to rough ER vesicle-mediated transport","type":"exact"},{"name":"cis-Golgi to rough endoplasmic reticulum transport","type":"exact"},{"name":"cis-Golgi to rough endoplasmic reticulum vesicle-mediated transport","type":"exact"},{"name":"retrograde (Golgi to ER) transport","type":"exact"},{"name":"retrograde transport, Golgi to ER","type":"exact"},{"name":"retrograde transport, Golgi to endoplasmic reticulum","type":"exact"},{"name":"retrograde vesicle-mediated transport, Golgi to ER","type":"exact"}],"termid":"GO:0006890","terms_by_termid":{"GO:0006890":null,"GO:2000156":null}}


id: PBO:0060110
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"MT-ND6 pseudogene 11","termid":"PBO:0060110"}


id: GO:0010150
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"The last stage of leaf development during which programmed degradation of macromolecules and nutrient recycling take place.","definition_xrefs":["PMID:34938309","ISBN:0387987819","PMID:17177638"],"direct_ancestors":[{"relation_name":"is_a","term_name":"plant organ senescence","termid":"GO:0090693"},{"relation_name":"part_of","term_name":"leaf development","termid":"GO:0048366"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"leaf senescence","termid":"GO:0010150"}


id: PBO:0065708
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"pseudouridylate synthase 7 pseudogene 1","termid":"PBO:0065708"}


id: MONDO:0006008
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Idiopathic inflammation of the vestibular nerve, characterized clinically by the acute or subacute onset of vertigo; nausea; and imbalance. The cochlear nerve is typically spared and hearing loss and tinnitus do not usually occur. Symptoms usually resolve over a period of days to weeks. (Adams et al., Principles of Neurology, 6th ed, p304)","definition_xrefs":["MESH:D020338"],"direct_ancestors":[{"relation_name":"is_a","term_name":"vestibulocochlear nerve disorder","termid":"MONDO:0001563"},{"relation_name":"is_a","term_name":"neuritis","termid":"MONDO:0002122"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005244"}],"interesting_parent_ids":["MONDO:0005244"],"is_obsolete":false,"name":"vestibular neuronitis","secondary_identifiers":["ICD10CM:H81.2","ICD9:386.12","EFO:0007537","UMLS:C0751908","ICD9:078.81","SCTID:186738001","DOID:12683","MEDGEN:155655"],"synonyms":[{"name":"epidemic neurolabyrinthitis","type":"exact"},{"name":"vestibular neuritis","type":"exact"}],"termid":"MONDO:0006008","xrefs":{"Monarch":{"xref_id":"0006008"}}}


id: GO:0002628
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"Any process that modulates the frequency, rate, or extent of proteolysis associated with antigen processing and presentation.","definition_xrefs":["GOC:add"],"direct_ancestors":[{"relation_name":"is_a","term_name":"regulation of proteolysis involved in protein catabolic process","termid":"GO:1903050"},{"relation_name":"regulates","term_name":"proteolysis associated with antigen processing and presentation","termid":"GO:0002496"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0008150"}],"interesting_parent_ids":["GO:0008150"],"is_obsolete":false,"name":"regulation of proteolysis associated with antigen processing and presentation","termid":"GO:0002628"}


id: PBO:0057375
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"microRNA 548aq","termid":"PBO:0057375"}


id: MONDO:0019247
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","gene_count":0,"genotype_count":0,"name":"obsolete combined hyperlipidemia (including acquired and inherited) (obsolete MONDO:0019247)","termid":"MONDO:0019247","xrefs":{"Monarch":{"xref_id":"0019247"}}}


id: FYPO:0007476
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype in which the duration of an otherwise normal occurrence of cell cycle arrest in mitotic G1 phase is shorter than normal.","definition_xrefs":["PMID:32361273","PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal cell cycle arrest in mitotic G1 phase","termid":"FYPO:0005097"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0005447"},{"rel_name":"is_a","termid":"FYPO:0000631"},{"rel_name":"is_a","termid":"FYPO:0000002"}],"interesting_parent_ids":["FYPO:0000631","FYPO:0000002","FYPO:0005447","FYPO:0001985"],"is_obsolete":false,"name":"decreased duration of cell cycle arrest in mitotic G1 phase","synonyms":[{"name":"decreased duration of cell cycle arrest in G1 phase during mitotic cell cycle","type":"exact"},{"name":"decreased duration of cell cycle arrest in mitotic G1 phase during vegetative growth","type":"exact"},{"name":"decreased duration of mitotic cell cycle arrest in G1 phase","type":"exact"}],"termid":"FYPO:0007476"}


id: SO:0001234
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"An attribute describing a feature that has either intra-genome or intracellular mobility.","definition_xrefs":["RSC:cb"],"direct_ancestors":[{"relation_name":"is_a","term_name":"feature_attribute","termid":"SO:0000733"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"mobile","secondary_identifiers":["http://en.wikipedia.org/wiki/Mobile"],"termid":"SO:0001234"}


id: MONDO:0002028
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A diverse category of psychiatric disorders characterized by behavior that deviates markedly from the expectations of the individual's culture; this pattern of deviation is pervasive and inflexible and is stable over time. The behavioral pattern negatively interferes with relationships and work.","definition_xrefs":["NCIT:C34922"],"direct_ancestors":[{"relation_name":"is_a","term_name":"psychiatric disorder","termid":"MONDO:0002025"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"personality disorder","secondary_identifiers":["ICD9:301.89","icd11.foundation:941859884","DOID:1510","HP:0012075","ICD9:301.8","MEDGEN:45827","SCTID:33449004","UMLS:C0031212","ICD9:301.9"],"synonyms":[{"name":"character disorder","type":"exact"},{"name":"personality disorder","type":"exact"},{"name":"personality disorder (disease)","type":"exact"}],"termid":"MONDO:0002028","xrefs":{"Monarch":{"xref_id":"0002028"}}}


id: PBO:0072602
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ribosomal protein S6 kinase related","termid":"PBO:0072602"}


id: PBO:0084460
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Mannosyltransferase involved in protein N-glycosylation; member of the KTR1 family; located in the Golgi apparatus; YUR1 has a paralog, KTR2, that arose from the whole genome duplication","termid":"PBO:0084460"}


id: FYPO:0007090
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A cellular process phenotype observed in the vegetative growth phase of the life cycle in which negative regulation of transcription as a consequence of the presence of one or more specific nutrient(s) is abnormal. For example, specific genes that are normally not transcribed in the presence of the nutrient may be transcribed in the mutant, or vice versa.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"cellular response phenotype during vegetative growth","termid":"FYPO:0001342"},{"relation_name":"is_a","term_name":"abnormal regulation of transcription during vegetative growth","termid":"FYPO:0004527"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0000298"},{"rel_name":"is_a","termid":"FYPO:0006551"},{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000002"},{"rel_name":"is_a","termid":"FYPO:0001320"},{"rel_name":"is_a","termid":"FYPO:0005447"}],"interesting_parent_ids":["FYPO:0000298","FYPO:0001985","FYPO:0005447","FYPO:0000002","FYPO:0006551","FYPO:0001320"],"is_obsolete":false,"name":"abnormal regulation of transcription by nutrient","synonyms":[{"name":"abnormal regulation of transcription by nutrient during mitotic cell cycle","type":"related"},{"name":"abnormal regulation of transcription by nutrient during vegetative growth","type":"exact"},{"name":"nutrient-insensitive transcription","type":"related"}],"termid":"FYPO:0007090"}


id: GO:0051574
data:
  {"annotation_feature_type":"gene","cv_name":"biological_process","definition":"OBSOLETE. Any process that activates or increases the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 9 of histone H3.","definition_xrefs":["GOC:ai"],"gene_count":0,"genotype_count":0,"name":"obsolete positive regulation of histone H3-K9 methylation (obsolete GO:0051574)","synonyms":[{"name":"activation of histone H3-K9 methylation","type":"narrow"},{"name":"stimulation of histone H3-K9 methylation","type":"narrow"},{"name":"up regulation of histone H3-K9 methylation","type":"exact"},{"name":"up-regulation of histone H3-K9 methylation","type":"exact"},{"name":"upregulation of histone H3-K9 methylation","type":"exact"}],"termid":"GO:0051574"}


id: PBO:0034245
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-results_in_assembly_of","termid":"PBO:0034245"}


id: MONDO:0020550
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Gestational choriocarcinoma is a gestational trophoblastic tumor (GTT) occurring secondary to pregnancy (ectopic or normal), miscarriage, voluntary termination of pregnancy (VTP) or a hydatidiform mole.","definition_xrefs":["Orphanet:99926"],"direct_ancestors":[{"relation_name":"is_a","term_name":"female reproductive organ cancer","termid":"MONDO:0001416"},{"relation_name":"is_a","term_name":"extragonadal nonseminomatous germ cell tumor","termid":"MONDO:0003578"},{"relation_name":"is_a","term_name":"choriocarcinoma","termid":"MONDO:0005207"},{"relation_name":"is_a","term_name":"gestational trophoblastic neoplasm","termid":"MONDO:0018944"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0004992"}],"interesting_parent_ids":["MONDO:0004992"],"is_obsolete":false,"name":"gestational choriocarcinoma","secondary_identifiers":["icd11.foundation:2136066651","ICD9:181","GARD:19712","MEDGEN:138102","NCIT:C4646","SCTID:417570003","DOID:2025","UMLS:C0349557"],"synonyms":[{"name":"gestational choriocarcinoma","type":"exact"},{"name":"gestational choriocarcinoma (morphologic abnormality)","type":"exact"},{"name":"gestational chorionepithelioma","type":"exact"},{"name":"molar pregnancy with choriocarcinoma","type":"exact"}],"termid":"MONDO:0020550","xrefs":{"Monarch":{"xref_id":"0020550"}}}


id: PBO:0029191
data:
  {"annotation_feature_type":"gene","cv_name":"cvterm_property_type","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"annotation_extension_relation-excess_intracellular_endomembrane_system_present","termid":"PBO:0029191"}


id: PBO:0112987
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Acetyltransferase required for biogenesis of small ribosomal subunit; conserved 18S rRNA cytosine acetyltransferase that modifies tRNAs assisted by adaptor Tan1p; responsible for incorporation of N4-acetylcytidine into mRNAs; human homolog NAT10 implicated in several types of cancer and premature aging","termid":"PBO:0112987"}


id: PBO:0040961
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"BCL2 interacting protein 3 pseudogene 32","termid":"PBO:0040961"}


id: GO:0102062
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"Catalysis of the reaction: 2-cis,6-cis-farnesyl diphosphate = (+)-alpha-santalene + diphosphoric acid.","definition_xrefs":["GOC:pz","EC:4.2.3.50"],"direct_ancestors":[{"relation_name":"is_a","term_name":"carbon-oxygen lyase activity, acting on phosphates","termid":"GO:0016838"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"GO:0016829"},{"rel_name":"is_a","termid":"GO:0003824"},{"rel_name":"is_a","termid":"GO:0003674"}],"interesting_parent_ids":["GO:0003674","GO:0016829","GO:0003824"],"is_obsolete":false,"name":"alpha-santalene synthase activity","secondary_identifiers":["MetaCyc:RXN-10567","RHEA:30463"],"termid":"GO:0102062"}


id: PBO:0079699
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ubiquitin like domain containing CTD phosphatase 1","termid":"PBO:0079699"}


id: PBO:0052496
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"kelch like family member 8","termid":"PBO:0052496"}


id: PBO:0041175
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"butyrophilin subfamily 1 member A1 pseudogene 1","termid":"PBO:0041175"}


id: PBO:0086117
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"Protein required for degradation of unstable forms of cytochrome c; located in the mitochondria","termid":"PBO:0086117"}


id: PBO:0001489
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"choline kinase (predicted)","termid":"PBO:0001489"}


id: PBO:0013760
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"cytoplasmic glutamate-tRNA ligase gus1 (predicted)","termid":"PBO:0013760"}


id: SO:0000485
data:
  {"annotation_feature_type":"gene","cv_name":"sequence","definition":"Genomic DNA of immunoglobulin/T-cell receptor gene in rearranged configuration including at least one DJ-gene, and one J-gene.","direct_ancestors":[{"relation_name":"has_part","term_name":"J_gene_segment","termid":"SO:0000470"},{"relation_name":"has_part","term_name":"DJ_gene_segment","termid":"SO:0000572"},{"relation_name":"is_a","term_name":"vertebrate_immunoglobulin_T_cell_receptor_rearranged_gene_cluster","termid":"SO:0000938"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"DJ_J_cluster","synonyms":[{"name":"(DJ)-J-CLUSTER","type":"exact"},{"name":"DJ J cluster","type":"exact"}],"termid":"SO:0000485"}


id: FYPO:0001771
data:
  {"annotation_feature_type":"genotype","cv_name":"fission_yeast_phenotype","definition":"A molecular function phenotype in which the observed rate of a tRNA methyltransferase activity is abnormal.","definition_xrefs":["PomBase:mah"],"direct_ancestors":[{"relation_name":"is_a","term_name":"abnormal catalytic activity","termid":"FYPO:0000661"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"FYPO:0001985"},{"rel_name":"is_a","termid":"FYPO:0000661"},{"rel_name":"is_a","termid":"FYPO:0000707"},{"rel_name":"is_a","termid":"FYPO:0000654"},{"rel_name":"is_a","termid":"FYPO:0000652"}],"interesting_parent_ids":["FYPO:0001985","FYPO:0000707","FYPO:0000654","FYPO:0000652","FYPO:0000661"],"is_obsolete":false,"name":"abnormal tRNA methyltransferase activity","termid":"FYPO:0001771"}


id: GO:0102756
data:
  {"annotation_feature_type":"gene","cv_name":"molecular_function","definition":"OBSOLETE. Catalysis of the reaction: malonyl-CoA + a very-long-chain 2,3,4-saturated fatty acyl CoA = carbon dioxide + coenzyme A + a very-long-chain oxoacyl-CoA.","definition_xrefs":["GOC:pz"],"gene_count":0,"genotype_count":0,"name":"obsolete very-long-chain 3-ketoacyl-CoA synthase activity (obsolete GO:0102756)","termid":"GO:0102756"}


id: PBO:0050076
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"hemicentin 1","termid":"PBO:0050076"}


id: MONDO:0024506
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"Any Adams-Oliver syndrome in which the cause of the disease is a mutation in the ARHGAP31 gene.","definition_xrefs":["MONDO:patterns/disease_series_by_gene"],"direct_ancestors":[{"relation_name":"is_a","term_name":"Adams-Oliver syndrome","termid":"MONDO:0007034"},{"relation_name":"is_a","term_name":"non-syndromic limb reduction defect","termid":"MONDO:0019713"}],"gene_count":0,"genotype_count":0,"interesting_parent_details":[{"rel_name":"is_a","termid":"MONDO:0005497"}],"interesting_parent_ids":["MONDO:0005497"],"is_obsolete":false,"name":"Adams-Oliver syndrome 1","secondary_identifiers":["UMLS:C4551482","MEDGEN:1635567","OMIM:100300"],"synonyms":[{"name":"AOS","type":"related"},{"name":"AOS1","type":"exact"},{"name":"ARHGAP31 Adams-Oliver syndrome","type":"exact"},{"name":"Adams-Oliver syndrome 1","type":"exact"},{"name":"Adams-Oliver syndrome caused by mutation in ARHGAP31","type":"exact"},{"name":"absence defect of limbs, scalp, and skull","type":"related"},{"name":"aplasia cutis congenita with terminal transverse limb defects","type":"related"},{"name":"aplasia cutis congenita, congenital heart defect, and frontonasal cysts","type":"related"},{"name":"congenital scalp defects with distal limb reduction anomalies","type":"related"}],"termid":"MONDO:0024506","xrefs":{"Monarch":{"xref_id":"0024506"}}}


id: PBO:0047757
data:
  {"annotation_feature_type":"gene","cv_name":"PomBase gene products","gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"folate hydrolase 1B (pseudogene)","termid":"PBO:0047757"}


id: MONDO:0002370
data:
  {"annotation_feature_type":"gene","cv_name":"mondo","definition":"A benign, borderline, or malignant transitional cell neoplasm arising from the ovary. It constitutes between 1% and 2% of all ovarian neoplasms. The average age at presentation is about 50 years. Grossly it is usually unilateral, firm and white or yellowish. Microscopically it consists of solid and cystic nests of epithelial cells resembling transitional epithelium surrounded by an abundant stromal component of dense, fibroblastic nature.","definition_xrefs":["NCIT:C3872"],"direct_ancestors":[{"relation_name":"is_a","term_name":"ovarian epithelial tumor","termid":"MONDO:0002229"},{"relation_name":"is_a","term_name":"Brenner tumor","termid":"MONDO:0024235"}],"gene_count":0,"genotype_count":0,"is_obsolete":false,"name":"ovarian Brenner tumor","secondary_identifiers":["MEDGEN:1716777","SCTID:254859006","DOID:2636","UMLS:C5234884"],"synonyms":[{"name":"Brenner neoplasm of ovary","type":"exact"},{"name":"Brenner neoplasm of the ovary","type":"exact"},{"name":"Brenner tumor","type":"broad"},{"name":"Brenner tumor of ovary","type":"exact"},{"name":"Brenner tumor of the ovary","type":"exact"},{"name":"Brenner tumour","type":"broad"},{"name":"Brenner tumour of ovary","type":"exact"},{"name":"Brenner tumour of the ovary","type":"exact"},{"name":"benign ovarian Brenner tumor","type":"narrow"},{"name":"benign ovarian Brenner tumour","type":"narrow"},{"name":"ovarian Brenner neoplasm","type":"exact"},{"name":"ovarian Brenner tumor","type":"exact"},{"name":"ovary Brenner tumor","type":"exact"},{"name":"ovary Brenner tumour","type":"exact"}],"termid":"MONDO:0002370","xrefs":{"Monarch":{"xref_id":"0002370"}}}


